-- dump date 20140619_132015 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 272626000001 SEQ_END SEQ_END NC_003212.1 3011208 3011208 DR NC_003212.1; contig end 3011208..3011208 Listeria innocua Clip11262 272626000002 SEQ_END SEQ_END NC_003383.1 81905 81905 DR NC_003383.1; contig end 81905..81905 Listeria innocua Clip11262 NP_469348.1 CDS dnaA NC_003212.1 319 1674 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 319..1674 Listeria innocua Clip11262 1128350 NP_469349.1 CDS dnaN NC_003212.1 1868 3013 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 1868..3013 Listeria innocua Clip11262 1128351 NP_469350.1 CDS lin0003 NC_003212.1 3122 4465 D hypothetical protein 3122..4465 Listeria innocua Clip11262 1128352 NP_469351.1 CDS lin0004 NC_003212.1 4645 4863 D similar to Bacillus subtilis YaaA protein; hypothetical protein 4645..4863 Listeria innocua Clip11262 1128353 NP_469352.1 CDS recF NC_003212.1 4870 5982 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 4870..5982 Listeria innocua Clip11262 1128354 NP_469353.1 CDS gyrB NC_003212.1 6031 7971 D DNA gyrase subunit B 6031..7971 Listeria innocua Clip11262 1128355 NP_469354.1 CDS gyrA NC_003212.1 8066 10594 D DNA gyrase subunit A 8066..10594 Listeria innocua Clip11262 1128356 NP_469355.1 CDS lin0008 NC_003212.1 10729 12243 D similar to cardiolipin synthase; hypothetical protein 10729..12243 Listeria innocua Clip11262 1128357 NP_469356.1 CDS lin0009 NC_003212.1 12259 12777 D similar to spermidine N1-acetyltransferase; hypothetical protein 12259..12777 Listeria innocua Clip11262 1128358 NP_469357.1 CDS lin0010 NC_003212.1 12919 13887 D similar to mevalonate kinase; hypothetical protein 12919..13887 Listeria innocua Clip11262 1128359 NP_469358.1 CDS lin0011 NC_003212.1 13796 14815 D similar to mevalonate diphosphate decarboxylase; hypothetical protein 13796..14815 Listeria innocua Clip11262 1128361 NP_469359.1 CDS lin0012 NC_003212.1 14793 15875 D similar to mevalonate kinases; hypothetical protein 14793..15875 Listeria innocua Clip11262 1128363 NP_469360.1 CDS qoxA NC_003212.1 16219 17325 D AA3-600 quinol oxidase subunit II 16219..17325 Listeria innocua Clip11262 1128364 NP_469361.1 CDS qoxB NC_003212.1 17343 19322 D AA3-600 quinol oxidase subunit I 17343..19322 Listeria innocua Clip11262 1128365 NP_469362.1 CDS qoxC NC_003212.1 19310 19921 D AA3-600 quinol oxidase subunit III 19310..19921 Listeria innocua Clip11262 1128366 NP_469363.1 CDS lin0016 NC_003212.1 19923 20255 D highly similar to quinol oxidase aa3-600 chain IV; hypothetical protein 19923..20255 Listeria innocua Clip11262 1128368 NP_469364.1 CDS lin0017 NC_003212.1 20424 21857 D beta-glucosidase 20424..21857 Listeria innocua Clip11262 1128369 NP_469365.1 CDS lin0018 NC_003212.1 21904 22725 R lin0018; hypothetical protein complement(21904..22725) Listeria innocua Clip11262 1128370 NP_469366.1 CDS lin0019 NC_003212.1 22966 23706 D similar to transcriptional regulator (GntR family); hypothetical protein 22966..23706 Listeria innocua Clip11262 1128371 NP_469367.1 CDS lin0020 NC_003212.1 23722 24123 D similar to PTS system, fructose-specific IIA component; hypothetical protein 23722..24123 Listeria innocua Clip11262 1128372 NP_469368.1 CDS lin0021 NC_003212.1 24123 24611 D similar to PTS system, fructose-specific IIB component; hypothetical protein 24123..24611 Listeria innocua Clip11262 1128374 NP_469369.1 CDS lin0022 NC_003212.1 24634 25437 D similar to PTS system, fructose-specific IIC component; hypothetical protein 24634..25437 Listeria innocua Clip11262 1128375 NP_469370.1 CDS lin0023 NC_003212.1 25412 26239 D similar to PTS system, mannose-specific IID component; hypothetical protein 25412..26239 Listeria innocua Clip11262 1128377 NP_469371.1 CDS lin0024 NC_003212.1 26267 26971 D similar to phosphoheptose isomerase; hypothetical protein 26267..26971 Listeria innocua Clip11262 1128378 NP_469372.1 CDS lin0025 NC_003212.1 27026 27667 D similar to Escherichia coli copper homeostasis protein CutC; hypothetical protein 27026..27667 Listeria innocua Clip11262 1128379 NP_469373.1 CDS lin0026 NC_003212.1 27872 29773 D similar to PTS system, beta-glucosides specific enzyme IIABC; hypothetical protein 27872..29773 Listeria innocua Clip11262 1128380 NP_469374.1 CDS lin0027 NC_003212.1 29855 30730 D similar to Escherichia coli microcin C7 self-immunity protein (MccF); hypothetical protein 29855..30730 Listeria innocua Clip11262 1128381 NP_469375.1 CDS lin0028 NC_003212.1 30963 31301 D lin0028; hypothetical protein 30963..31301 Listeria innocua Clip11262 1128382 NP_469376.1 CDS lin0029 NC_003212.1 31338 32147 R hypothetical protein complement(31338..32147) Listeria innocua Clip11262 1128383 NP_469377.1 CDS lin0030 NC_003212.1 32164 33219 R LacI family transcription regulator complement(32164..33219) Listeria innocua Clip11262 1128384 NP_469378.1 CDS lin0031 NC_003212.1 33421 34386 D similar to xylose repressor; hypothetical protein 33421..34386 Listeria innocua Clip11262 1128385 NP_469379.1 CDS lin0032 NC_003212.1 34383 36785 D similar to endoglucanase; hypothetical protein 34383..36785 Listeria innocua Clip11262 1128387 NP_469380.1 CDS lin0033 NC_003212.1 36798 38156 D similar to PTS system, cellobiose-specific IIC component; hypothetical protein 36798..38156 Listeria innocua Clip11262 1128388 NP_469381.1 CDS lin0034 NC_003212.1 38157 39242 D similar to Glucosamine--fructose-6-phosphate aminotransferase (C-terminal domain); hypothetical protein 38157..39242 Listeria innocua Clip11262 1128390 NP_469382.1 CDS lin0035 NC_003212.1 39445 40104 D similar to Escherichia coli DedA protein; hypothetical protein 39445..40104 Listeria innocua Clip11262 1128391 NP_469383.1 CDS lin0036 NC_003212.1 40183 41409 D similar to arginine deiminase; catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 40183..41409 Listeria innocua Clip11262 1128392 NP_469384.1 CDS rpsF NC_003212.1 41689 41982 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 41689..41982 Listeria innocua Clip11262 1128393 NP_469385.1 CDS lin0038 NC_003212.1 42038 42577 D highly similar to single-strand binding protein (SSB); hypothetical protein 42038..42577 Listeria innocua Clip11262 1128394 NP_469386.1 CDS rpsR NC_003212.1 42621 42860 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 42621..42860 Listeria innocua Clip11262 1128395 NP_469387.1 CDS lin0040 NC_003212.1 43016 43627 D lin0040; hypothetical protein 43016..43627 Listeria innocua Clip11262 1128396 NP_469388.1 CDS lin0041 NC_003212.1 43883 44497 D similar to Staphylococcus two-component sensor histidine kinase AgrB; essential for production of a quorum sensing autoinducing peptide; putative accessory gene regulator protein 43883..44497 Listeria innocua Clip11262 1128397 NP_469389.1 CDS lin0042 NC_003212.1 44481 44642 D lin0042; hypothetical protein 44481..44642 Listeria innocua Clip11262 1128399 NP_469390.1 CDS lin0043 NC_003212.1 44738 46033 D similar to sensor histidine kinase (AgrC from Staphylococcus); hypothetical protein 44738..46033 Listeria innocua Clip11262 1128400 NP_469391.1 CDS lin0044 NC_003212.1 46052 46780 D similar to 2-components response regulator protein (AgrA from Staphylococcus); hypothetical protein 46052..46780 Listeria innocua Clip11262 1128401 NP_469392.1 CDS lin0045 NC_003212.1 46947 48920 D highly similar to Bacillus subtilis YybT protein; hypothetical protein 46947..48920 Listeria innocua Clip11262 1128402 NP_469393.1 CDS rplI NC_003212.1 48923 49369 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 48923..49369 Listeria innocua Clip11262 1128404 NP_469394.1 CDS lin0047 NC_003212.1 49394 50746 D highly similar to replicative DNA helicases; unwinds double stranded DNA; replicative DNA helicase 49394..50746 Listeria innocua Clip11262 1128405 NP_469395.1 CDS lin0048 NC_003212.1 51005 52297 D highly similar to adenylosuccinate synthetase; catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 51005..52297 Listeria innocua Clip11262 1128406 NP_469396.1 CDS lin0049 NC_003212.1 52623 52916 D similar to a small heat shock protein of Clostridium acetobutylicum; hypothetical protein 52623..52916 Listeria innocua Clip11262 1128407 NP_469397.1 CDS lin0050 NC_003212.1 53065 56268 D similar to Bacillus subtilis YueB protein; hypothetical protein 53065..56268 Listeria innocua Clip11262 1128408 NP_469398.1 CDS lin0051 NC_003212.1 56258 56770 D lin0051; hypothetical protein 56258..56770 Listeria innocua Clip11262 1128410 NP_469399.1 CDS lin0052 NC_003212.1 56788 57039 D similar to Bacillus subtilis YukD protein; hypothetical protein 56788..57039 Listeria innocua Clip11262 1128411 NP_469400.1 CDS lin0053 NC_003212.1 57061 58257 D similar to Bacillus subtilis YukC protein; hypothetical protein 57061..58257 Listeria innocua Clip11262 1128412 NP_469401.1 CDS lin0054 NC_003212.1 58271 62767 D highly similar to Bacillus subtilis YukA protein; hypothetical protein 58271..62767 Listeria innocua Clip11262 1128413 NP_469402.1 CDS lin0055 NC_003212.1 62787 63182 D lin0055; hypothetical protein 62787..63182 Listeria innocua Clip11262 1128414 NP_469403.1 CDS lin0056 NC_003212.1 63175 63474 D lin0056; hypothetical protein 63175..63474 Listeria innocua Clip11262 1128416 NP_469404.1 CDS lin0057 NC_003212.1 63471 64172 D lin0057; hypothetical protein 63471..64172 Listeria innocua Clip11262 1128418 NP_469405.1 CDS lin0058 NC_003212.1 64173 64505 D lin0058; hypothetical protein 64173..64505 Listeria innocua Clip11262 1128420 NP_469406.1 CDS lin0059 NC_003212.1 64519 66252 D lin0059; hypothetical protein 64519..66252 Listeria innocua Clip11262 1128421 NP_469407.1 CDS lin0060 NC_003212.1 66267 66881 D lin0060; hypothetical protein 66267..66881 Listeria innocua Clip11262 1128422 NP_469408.1 CDS lin0061 NC_003212.1 67522 67845 D hypothetical protein 67522..67845 Listeria innocua Clip11262 1128423 NP_469409.1 CDS lin0062 NC_003212.1 68014 68646 D hypothetical protein 68014..68646 Listeria innocua Clip11262 1128424 NP_469410.1 CDS lin0064 NC_003212.1 70428 70817 D lin0064; hypothetical protein 70428..70817 Listeria innocua Clip11262 1128426 NP_469411.1 CDS lin0065 NC_003212.1 70955 71365 D lin0065; hypothetical protein 70955..71365 Listeria innocua Clip11262 1128427 NP_469412.1 CDS lin0066 NC_003212.1 71623 71946 D lin0066; hypothetical protein 71623..71946 Listeria innocua Clip11262 1128428 NP_469413.1 CDS lin0067 NC_003212.1 72374 73147 D similar to carboxyphosphonoenolpyruvate phosphonomutase; hypothetical protein 72374..73147 Listeria innocua Clip11262 1128429 NP_469414.1 CDS lin0068 NC_003212.1 73144 74196 D similar to Escherichia coli Ada protein (O6-methylguanine-DNA methyltransferase); hypothetical protein 73144..74196 Listeria innocua Clip11262 1128431 NP_469415.1 CDS lin0069 NC_003212.1 74218 74856 R hypothetical protein complement(74218..74856) Listeria innocua Clip11262 1128432 NP_469416.1 CDS lin0070 NC_003212.1 74988 75944 D similar to phosphoglycerate dehydrogenase; hypothetical protein 74988..75944 Listeria innocua Clip11262 1128433 NP_469417.1 CDS lin0071 NC_003212.1 76209 77411 R similar to integrase; hypothetical protein complement(76209..77411) Listeria innocua Clip11262 1128434 NP_469418.1 CDS lin0072 NC_003212.1 77476 78126 R lin0072; hypothetical protein complement(77476..78126) Listeria innocua Clip11262 1128435 NP_469419.1 CDS lin0073 NC_003212.1 78505 78981 R similar to a putative repressor protein [Bacteriophage A118]; hypothetical protein complement(78505..78981) Listeria innocua Clip11262 1128436 NP_469420.1 CDS lin0074 NC_003212.1 79378 79644 D highly similar to gp37 [Bacteriophage A118]; hypothetical protein 79378..79644 Listeria innocua Clip11262 1128437 NP_469421.1 CDS lin0075 NC_003212.1 79573 79803 R highly similar to gp37-1 [Bacteriophage A118]; hypothetical protein complement(79573..79803) Listeria innocua Clip11262 1128438 NP_469422.1 CDS lin0076 NC_003212.1 79869 80063 D lin0076; hypothetical protein 79869..80063 Listeria innocua Clip11262 1128439 NP_469423.1 CDS lin0077 NC_003212.1 80075 80311 D identical to gp40 [Bacteriophage A118]; identical to gp40 80075..80311 Listeria innocua Clip11262 1128440 NP_469424.1 CDS lin0078 NC_003212.1 80308 80589 D similar to protein gp41 [Bacteriophage A118]; hypothetical protein 80308..80589 Listeria innocua Clip11262 1128441 NP_469425.1 CDS lin0079 NC_003212.1 80775 81017 R lin0079; hypothetical protein complement(80775..81017) Listeria innocua Clip11262 1128442 NP_469426.1 CDS lin0080 NC_003212.1 81081 81854 D similar to similar to anti-repressor [Bacteriophage A118]; hypothetical protein 81081..81854 Listeria innocua Clip11262 1128443 NP_469427.1 CDS lin0081 NC_003212.1 81973 82497 D highly similar to gp43 [Bacteriophage A118]; hypothetical protein 81973..82497 Listeria innocua Clip11262 1128444 NP_469428.1 CDS lin0082 NC_003212.1 82504 82689 D lin0082; hypothetical protein 82504..82689 Listeria innocua Clip11262 1128446 NP_469429.1 CDS lin0083 NC_003212.1 82705 82893 D highly similar to gp45 [Bacteriophage A118]; hypothetical protein 82705..82893 Listeria innocua Clip11262 1128447 NP_469430.1 CDS lin0084 NC_003212.1 83126 84085 D highly similar to gp47 [Bacteriophage A118]; hypothetical protein 83126..84085 Listeria innocua Clip11262 1128448 NP_469431.1 CDS lin0085 NC_003212.1 84085 84900 D putative recombinase [Bacteriophage A118]; putative recombinase 84085..84900 Listeria innocua Clip11262 1128450 NP_469432.1 CDS lin0086 NC_003212.1 84921 85832 D similar to protein gp49; hypothetical protein 84921..85832 Listeria innocua Clip11262 1128451 NP_469433.1 CDS lin0087 NC_003212.1 85829 85996 D similar to phage protein; hypothetical protein 85829..85996 Listeria innocua Clip11262 1128453 NP_469434.1 CDS lin0088 NC_003212.1 86290 87102 D similar to site-specific DNA-methyltransferase; hypothetical protein 86290..87102 Listeria innocua Clip11262 1128454 NP_469435.1 CDS lin0089 NC_003212.1 87099 87728 D similar to gp51 [Bacteriophage A118]; hypothetical protein 87099..87728 Listeria innocua Clip11262 1128456 NP_469436.1 CDS lin0090 NC_003212.1 87725 88246 D lin0090; hypothetical protein 87725..88246 Listeria innocua Clip11262 1128458 NP_469437.1 CDS lin0091 NC_003212.1 88373 88765 D similar to phage proteins; hypothetical protein 88373..88765 Listeria innocua Clip11262 1128459 NP_469438.1 CDS lin0092 NC_003212.1 88762 88947 D lin0092; hypothetical protein 88762..88947 Listeria innocua Clip11262 1128461 NP_469439.1 CDS lin0093 NC_003212.1 88944 89234 D lin0093; hypothetical protein 88944..89234 Listeria innocua Clip11262 1128463 NP_469440.1 CDS lin0094 NC_003212.1 89231 89437 D highly similar to gp55 [Bacteriophage A118]; hypothetical protein 89231..89437 Listeria innocua Clip11262 1128465 NP_469441.1 CDS lin0095 NC_003212.1 89438 89839 D highly similar to gp59 [Bacteriophage A118]; hypothetical protein 89438..89839 Listeria innocua Clip11262 1128467 NP_469442.1 CDS lin0096 NC_003212.1 89836 90336 D lin0096; hypothetical protein 89836..90336 Listeria innocua Clip11262 1128469 NP_469443.1 CDS lin0097 NC_003212.1 90333 90812 D similar to single-stranded DNA-binding protein; hypothetical protein 90333..90812 Listeria innocua Clip11262 1128470 NP_469444.1 CDS lin0098 NC_003212.1 90831 91013 D hypothetical protein 90831..91013 Listeria innocua Clip11262 1128471 NP_469445.1 CDS lin0099 NC_003212.1 90958 91362 D similar to phage protein; hypothetical protein 90958..91362 Listeria innocua Clip11262 1128473 NP_469446.1 CDS lin0100 NC_003212.1 91366 91749 D lin0100; hypothetical protein 91366..91749 Listeria innocua Clip11262 1128475 NP_469447.1 CDS lin0101 NC_003212.1 91890 92324 D Protein gp66 [Bacteriophage A118]; protein gp66 91890..92324 Listeria innocua Clip11262 1128476 NP_469448.1 CDS lin0102 NC_003212.1 92534 92710 D lin0102; hypothetical protein 92534..92710 Listeria innocua Clip11262 1128477 NP_469449.1 CDS lin0103 NC_003212.1 92769 93032 D lin0103; hypothetical protein 92769..93032 Listeria innocua Clip11262 1128478 NP_469450.1 CDS lin0104 NC_003212.1 93090 93632 D highly similar to putative terminase small subunit [Bacteriophage A118]; hypothetical protein 93090..93632 Listeria innocua Clip11262 1128479 NP_469451.1 CDS lin0105 NC_003212.1 93601 94932 D putative terminase large subunit from bacteriophage A118 93601..94932 Listeria innocua Clip11262 1128481 NP_469452.1 CDS lin0106 NC_003212.1 94945 96714 D putative portal protein [Bacteriophage A118]; putative portal protein 94945..96714 Listeria innocua Clip11262 1128482 NP_469453.1 CDS lin0107 NC_003212.1 96715 97854 D Protein gp4 [Bacteriophage A118]; protein gp4 96715..97854 Listeria innocua Clip11262 1128484 NP_469454.1 CDS lin0108 NC_003212.1 97933 98502 D putative scaffolding protein [Bacteriophage A118]; putative scaffolding protein 97933..98502 Listeria innocua Clip11262 1128485 NP_469455.1 CDS lin0109 NC_003212.1 98526 99425 D highly similar to major capsid protein [Bacteriophage A118]; hypothetical protein 98526..99425 Listeria innocua Clip11262 1128486 NP_469456.1 CDS lin0110 NC_003212.1 99425 99583 D Protein gp7 [Bacteriophage A118]; protein gp7 99425..99583 Listeria innocua Clip11262 1128487 NP_469457.1 CDS lin0111 NC_003212.1 99585 99980 D Protein gp8 [Bacteriophage A118]; protein gp8 99585..99980 Listeria innocua Clip11262 1128488 NP_469458.1 CDS lin0112 NC_003212.1 99980 100342 D Protein gp9 [Bacteriophage A118]; protein gp9 99980..100342 Listeria innocua Clip11262 1128490 NP_469459.1 CDS lin0113 NC_003212.1 100342 100680 D Protein gp10 [Bacteriophage A118]; protein gp10 100342..100680 Listeria innocua Clip11262 1128491 NP_469460.1 CDS lin0114 NC_003212.1 100680 101087 D Portein gp11 [Bacteriophage A118]; protein gp11 100680..101087 Listeria innocua Clip11262 1128493 NP_469461.1 CDS lin0115 NC_003212.1 101090 101527 D major tail shaft protein [Bacteriophage A118]; major tail shaft protein 101090..101527 Listeria innocua Clip11262 1128496 NP_469462.1 CDS lin0117 NC_003212.1 101842 102264 D Protein gp14 [Bacteriophage A118]; protein gp14 101842..102264 Listeria innocua Clip11262 1128498 NP_469463.1 CDS lin0118 NC_003212.1 102270 102872 D Protein gp15 [Bacteriophage A118]; protein gp15 102270..102872 Listeria innocua Clip11262 1128500 NP_469464.1 CDS lin0119 NC_003212.1 102883 108249 D putative tape-measure [Bacteriophage A118]; putative tape-measure 102883..108249 Listeria innocua Clip11262 1128501 NP_469465.1 CDS lin0120 NC_003212.1 108246 109073 D highly similar to gp17 [Bacteriophage A118]; hypothetical protein 108246..109073 Listeria innocua Clip11262 1128503 NP_469466.1 CDS lin0121 NC_003212.1 109073 110110 D highly similar to gp18 [Bacteriophage A118]; hypothetical protein 109073..110110 Listeria innocua Clip11262 1128504 NP_469467.1 CDS lin0122 NC_003212.1 110111 111136 D highly similar to gp19 [Bacteriophage A118]; hypothetical protein 110111..111136 Listeria innocua Clip11262 1128506 NP_469468.1 CDS lin0123 NC_003212.1 111133 112200 D similar to gp20 [Bacteriophage A118]; hypothetical protein 111133..112200 Listeria innocua Clip11262 1128508 NP_469469.1 CDS lin0124 NC_003212.1 112197 112538 D lin0124; hypothetical protein 112197..112538 Listeria innocua Clip11262 1128510 NP_469470.1 CDS lin0125 NC_003212.1 112539 112685 D lin0125; hypothetical protein 112539..112685 Listeria innocua Clip11262 1128512 NP_469471.1 CDS lin0126 NC_003212.1 112722 113087 D protein gp23 [Bacteriophage A118]; protein gp23 112722..113087 Listeria innocua Clip11262 1128514 NP_469472.1 CDS lin0127 NC_003212.1 113100 113381 D holin [Bacteriophage A118]; holin 113100..113381 Listeria innocua Clip11262 1128515 NP_469473.1 CDS lin0128 NC_003212.1 113381 114250 D Bacteriophage A500 from Listeria; L-alanoyl-D-glutamate peptidase 113381..114250 Listeria innocua Clip11262 1128517 NP_469474.1 CDS lin0129 NC_003212.1 114275 114691 D lin0129; hypothetical protein 114275..114691 Listeria innocua Clip11262 1128518 NP_469475.1 CDS lin0130 NC_003212.1 115716 116072 D lin0130; hypothetical protein 115716..116072 Listeria innocua Clip11262 1128519 NP_469476.1 CDS lin0131 NC_003212.1 116483 117142 D lin0131; hypothetical protein 116483..117142 Listeria innocua Clip11262 1128520 NP_469477.1 CDS lin0132 NC_003212.1 117256 123096 D lin0132; hypothetical protein 117256..123096 Listeria innocua Clip11262 1128521 NP_469478.1 CDS lin0133 NC_003212.1 123093 125372 D lin0133; hypothetical protein 123093..125372 Listeria innocua Clip11262 1128523 NP_469479.1 CDS lin0134 NC_003212.1 125429 125671 D similar to ATP synthase C chain; hypothetical protein 125429..125671 Listeria innocua Clip11262 1128524 NP_469480.1 CDS lin0135 NC_003212.1 125683 126714 D weakly similar to ATP synthase delta chain; hypothetical protein 125683..126714 Listeria innocua Clip11262 1128525 NP_469481.1 CDS lin0136 NC_003212.1 126711 128207 D similar to ATP synthase alpha chain; produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 126711..128207 Listeria innocua Clip11262 1128527 NP_469482.1 CDS lin0137 NC_003212.1 128204 129076 D similar to ATP synthase gamma chain; hypothetical protein 128204..129076 Listeria innocua Clip11262 1128528 NP_469483.1 CDS lin0138 NC_003212.1 129077 130447 D similar to ATP synthase beta chain; produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 129077..130447 Listeria innocua Clip11262 1128530 NP_469484.1 CDS lin0139 NC_003212.1 130460 130777 D similar to ATP synthase epsilon chain; hypothetical protein 130460..130777 Listeria innocua Clip11262 1128531 NP_469485.1 CDS lin0140 NC_003212.1 130774 131334 D lin0140; hypothetical protein 130774..131334 Listeria innocua Clip11262 1128533 NP_469486.1 CDS lin0141 NC_003212.1 131478 137459 D peptidoglycan binding protein 131478..137459 Listeria innocua Clip11262 1128534 NP_469487.1 CDS lin0142 NC_003212.1 137621 138259 D lin0142; hypothetical protein 137621..138259 Listeria innocua Clip11262 1128535 NP_469488.1 CDS lin0143 NC_003212.1 138556 139521 D similar to PTS system mannose-specific, factor IIAB; hypothetical protein 138556..139521 Listeria innocua Clip11262 1128536 NP_469489.1 CDS lin0144 NC_003212.1 139545 140351 D similar to PTS system mannose-specific, factor IIC; hypothetical protein 139545..140351 Listeria innocua Clip11262 1128537 NP_469490.1 CDS lin0145 NC_003212.1 140373 141284 D similar to PTS system mannose-specific, factor IID; hypothetical protein 140373..141284 Listeria innocua Clip11262 1128538 NP_469491.1 CDS lin0146 NC_003212.1 141411 141800 D lin0146; hypothetical protein 141411..141800 Listeria innocua Clip11262 1128539 NP_469492.1 CDS lin0147 NC_003212.1 141935 142285 D lin0147; hypothetical protein 141935..142285 Listeria innocua Clip11262 1128540 NP_469493.1 CDS lin0148 NC_003212.1 142325 143842 R hypothetical protein complement(142325..143842) Listeria innocua Clip11262 1128541 NP_469494.1 CDS lin0149 NC_003212.1 143949 144242 R similar to transcription regulator; hypothetical protein complement(143949..144242) Listeria innocua Clip11262 1128542 NP_469495.1 CDS lin0150 NC_003212.1 144354 144644 D lin0150; hypothetical protein 144354..144644 Listeria innocua Clip11262 1128543 NP_469496.1 CDS lin0151 NC_003212.1 144658 145290 D similar to NADH oxidase; hypothetical protein 144658..145290 Listeria innocua Clip11262 1128544 NP_469497.1 CDS lin0152 NC_003212.1 145385 145756 D lin0152; hypothetical protein 145385..145756 Listeria innocua Clip11262 1128545 NP_469498.1 CDS lin0153 NC_003212.1 146050 148320 D highly similar to chitinase B; hypothetical protein 146050..148320 Listeria innocua Clip11262 1128546 NP_469499.1 CDS lin0154 NC_003212.1 148360 149562 R hypothetical protein complement(148360..149562) Listeria innocua Clip11262 1128547 NP_469500.1 CDS lin0155 NC_003212.1 149752 151533 R similar to ABC transporter, ATP-binding protein; hypothetical protein complement(149752..151533) Listeria innocua Clip11262 1128548 NP_469501.1 CDS lin0156 NC_003212.1 151526 153268 R similar to ABC transporter, ATP-binding protein; hypothetical protein complement(151526..153268) Listeria innocua Clip11262 1128549 NP_469502.1 CDS lin0157 NC_003212.1 153411 154244 D similar to transcriptional regulatory proteins, AraC family; hypothetical protein 153411..154244 Listeria innocua Clip11262 1128551 NP_469503.1 CDS lin0158 NC_003212.1 154394 155092 D lin0158; hypothetical protein 154394..155092 Listeria innocua Clip11262 1128552 NP_469504.1 CDS lin0159 NC_003212.1 155062 155757 R weakly similar to transcription regulators, Fnr/Crp family; hypothetical protein complement(155062..155757) Listeria innocua Clip11262 1128553 NP_469505.1 CDS lin0160 NC_003212.1 155931 156383 R similar to protein gp35 from Bacteriophage A118; hypothetical protein complement(155931..156383) Listeria innocua Clip11262 1128554 NP_469506.1 CDS lin0161 NC_003212.1 156389 156742 R similar to putative repressor C1 from lactococcal bacteriophage Tuc2009; hypothetical protein complement(156389..156742) Listeria innocua Clip11262 1128555 NP_469507.1 CDS lin0162 NC_003212.1 156943 157371 D similar to Antigen D; hypothetical protein 156943..157371 Listeria innocua Clip11262 1128557 NP_469508.1 CDS lin0163 NC_003212.1 157383 157799 D similar to Antigen C; hypothetical protein 157383..157799 Listeria innocua Clip11262 1128558 NP_469509.1 CDS lmaB NC_003212.1 158079 158468 D antigen B 158079..158468 Listeria innocua Clip11262 1128559 NP_469510.1 CDS lmaA NC_003212.1 158481 158993 D antigen A 158481..158993 Listeria innocua Clip11262 1128560 NP_469511.1 CDS lin0166 NC_003212.1 159041 159343 D lin0166; hypothetical protein 159041..159343 Listeria innocua Clip11262 1128561 NP_469512.1 CDS lin0167 NC_003212.1 159454 159789 D lin0167; hypothetical protein 159454..159789 Listeria innocua Clip11262 1128562 NP_469513.1 CDS lin0168 NC_003212.1 159776 161644 D similar to bacteriophage minor tail proteins; hypothetical protein 159776..161644 Listeria innocua Clip11262 1128564 NP_469514.1 CDS lin0169 NC_003212.1 161641 162459 D similar to phage proteins; hypothetical protein 161641..162459 Listeria innocua Clip11262 1128566 NP_469515.1 CDS lin0170 NC_003212.1 162469 163605 D similar to protein gp18 from Bacteriophage A118; hypothetical protein 162469..163605 Listeria innocua Clip11262 1128567 NP_469516.1 CDS lin0171 NC_003212.1 163595 163894 D lin0171; hypothetical protein 163595..163894 Listeria innocua Clip11262 1128569 NP_469517.1 CDS lin0172 NC_003212.1 163909 164484 D lin0172; hypothetical protein 163909..164484 Listeria innocua Clip11262 1128570 NP_469518.1 CDS lin0173 NC_003212.1 164499 164978 D lin0173; hypothetical protein 164499..164978 Listeria innocua Clip11262 1128571 NP_469519.1 CDS lin0174 NC_003212.1 164975 165511 D weakly similar to protein gp20 from Bacteriophage A118; hypothetical protein 164975..165511 Listeria innocua Clip11262 1128573 NP_469520.1 CDS lin0175 NC_003212.1 165530 165952 D similar to a protein from Bacteriophage phi-105 (ORF 45); hypothetical protein 165530..165952 Listeria innocua Clip11262 1128574 NP_469521.1 CDS lin0176 NC_003212.1 165933 166661 D similar to autolysin: N-acetylmuramoyl-L-alanine amidase; hypothetical protein 165933..166661 Listeria innocua Clip11262 1128575 NP_469522.1 CDS lin0177 NC_003212.1 166696 169053 R similar to 5'-nucleotidase, putative peptidoglycan bound protein (LPXTG motif); hypothetical protein complement(166696..169053) Listeria innocua Clip11262 1128576 NP_469523.1 CDS lin0178 NC_003212.1 169241 169990 D hypothetical protein 169241..169990 Listeria innocua Clip11262 1128577 NP_469524.1 CDS lin0179 NC_003212.1 170062 171570 R similar to inosine monophosphate dehydrogenase; catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5-monophosphate dehydrogenase complement(170062..171570) Listeria innocua Clip11262 1128578 NP_469525.1 CDS lin0180 NC_003212.1 171737 171970 D similar to Escherichia coli YjdI protein; hypothetical protein 171737..171970 Listeria innocua Clip11262 1128579 NP_469526.1 CDS lin0181 NC_003212.1 171982 172260 D similar to Escherichia coli YjdJ protein; hypothetical protein 171982..172260 Listeria innocua Clip11262 1128580 NP_469527.1 CDS lin0182 NC_003212.1 172586 174160 D similar to oligopeptide ABC transport system substrate-binding proteins; hypothetical protein 172586..174160 Listeria innocua Clip11262 1128581 NP_469528.1 CDS lin0183 NC_003212.1 174262 175212 D similar to oligopeptide ABC transporter, permease protein; hypothetical protein 174262..175212 Listeria innocua Clip11262 1128582 NP_469529.1 CDS lin0184 NC_003212.1 175223 176116 D similar to oligopeptide ABC transporter, permease protein; hypothetical protein 175223..176116 Listeria innocua Clip11262 1128583 NP_469530.1 CDS lin0185 NC_003212.1 176318 176602 D lin0185; hypothetical protein 176318..176602 Listeria innocua Clip11262 1128584 NP_469531.1 CDS lin0186 NC_003212.1 176603 176971 D lin0186; hypothetical protein 176603..176971 Listeria innocua Clip11262 1128586 NP_469532.1 CDS lin0187 NC_003212.1 176968 178398 D lin0187; hypothetical protein 176968..178398 Listeria innocua Clip11262 1128588 NP_469533.1 CDS lin0188 NC_003212.1 178422 178841 D lin0188; hypothetical protein 178422..178841 Listeria innocua Clip11262 1128589 NP_469534.1 CDS lin0189 NC_003212.1 178862 179017 D lin0189; hypothetical protein 178862..179017 Listeria innocua Clip11262 1128590 NP_469535.1 CDS lin0190 NC_003212.1 179138 180793 R similar to oligopeptide ABC transporter-binding protein; hypothetical protein complement(179138..180793) Listeria innocua Clip11262 1128591 NP_469536.1 CDS lin0191 NC_003212.1 181016 181954 D similar to a probable high-affinity zinc ABC transporter (Zn(II)-binding lipoprotein); hypothetical protein 181016..181954 Listeria innocua Clip11262 1128592 NP_469537.1 CDS lin0192 NC_003212.1 181968 182672 D similar to high-affinity zinc ABC transporter (ATP-binding protein); hypothetical protein 181968..182672 Listeria innocua Clip11262 1128593 NP_469538.1 CDS lin0193 NC_003212.1 182621 183427 D similar to high-affinity zinc ABC transporter (membrane protein); hypothetical protein 182621..183427 Listeria innocua Clip11262 1128595 NP_469539.1 CDS lin0194 NC_003212.1 183431 184111 R lin0194; hypothetical protein complement(183431..184111) Listeria innocua Clip11262 1128596 NP_469540.1 CDS lin0195 NC_003212.1 184384 186723 D similar to ATP dependent helicase; hypothetical protein 184384..186723 Listeria innocua Clip11262 1128597 NP_469541.1 CDS lin0196 NC_003212.1 186768 187580 D hypothetical protein 186768..187580 Listeria innocua Clip11262 1128598 NP_469542.1 CDS lin0197 NC_003212.1 187817 188893 D similar to chloromuconate cycloisomerase ykfB of Bacillus subtilis; hypothetical protein 187817..188893 Listeria innocua Clip11262 1128599 NP_469543.1 CDS lin0198 NC_003212.1 188910 189788 D P45 related protein 188910..189788 Listeria innocua Clip11262 1128600 NP_469544.1 CDS lin0199 NC_003212.1 189804 190577 D some similarities to probable beta-lactamase; hypothetical protein 189804..190577 Listeria innocua Clip11262 1128601 NP_469545.1 CDS lin0200 NC_003212.1 190599 192248 D similar to ABC transporter oligopeptide-binding protein; hypothetical protein 190599..192248 Listeria innocua Clip11262 1128602 NP_469546.1 CDS lin0201 NC_003212.1 192263 193081 D similar to dipeptide ABC transporter; hypothetical protein 192263..193081 Listeria innocua Clip11262 1128603 NP_469547.1 CDS lin0202 NC_003212.1 193292 195337 D surface anchored protein 193292..195337 Listeria innocua Clip11262 1128604 NP_469548.1 CDS lin0203 NC_003212.1 195525 197285 D peptidoglycan binding protein 195525..197285 Listeria innocua Clip11262 1128605 NP_469549.1 CDS lin0204 NC_003212.1 197333 198169 R lin0204; hypothetical protein complement(197333..198169) Listeria innocua Clip11262 1128606 NP_469550.1 CDS lin0205 NC_003212.1 198383 199375 D similar to Bacillus subtilis DNA polymerase III (delta' subunit); catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 198383..199375 Listeria innocua Clip11262 1128607 NP_469551.1 CDS lin0206 NC_003212.1 199381 200214 D lin0206; hypothetical protein 199381..200214 Listeria innocua Clip11262 1128608 NP_469552.1 CDS lin0207 NC_003212.1 200225 200614 D similar to Bacillus subtilis YabA protein; in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA; DNA replication intiation control protein YabA 200225..200614 Listeria innocua Clip11262 1128609 NP_469553.1 CDS lin0208 NC_003212.1 200672 201424 D hypothetical protein 200672..201424 Listeria innocua Clip11262 1128610 NP_469554.1 CDS lin0209 NC_003212.1 201408 201680 D similar to Bacillus subtilis YazA protein; GIY-YIG nuclease superfamily protein 201408..201680 Listeria innocua Clip11262 1128612 NP_469555.1 CDS lin0210 NC_003212.1 201677 202558 D hypothetical protein 201677..202558 Listeria innocua Clip11262 1128614 NP_469556.1 CDS lin0211 NC_003212.1 202604 202888 R similar to Bacillus subtilis transcription regulatory protein AbrB; hypothetical protein complement(202604..202888) Listeria innocua Clip11262 1128615 NP_469557.1 CDS lin0212 NC_003212.1 203003 203860 D similar to a glucose uptake protein; hypothetical protein 203003..203860 Listeria innocua Clip11262 1128616 NP_469558.1 CDS lin0213 NC_003212.1 203929 205188 D lin0213; hypothetical protein 203929..205188 Listeria innocua Clip11262 1128617 NP_469559.1 CDS lin0214 NC_003212.1 205249 206493 R peptidoglycan binding protein complement(205249..206493) Listeria innocua Clip11262 1128618 NP_469560.1 CDS lin0215 NC_003212.1 206770 207630 D similar to glucose uptake protein; hypothetical protein 206770..207630 Listeria innocua Clip11262 1128619 NP_469561.1 CDS metS NC_003212.1 207702 209696 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 207702..209696 Listeria innocua Clip11262 1128620 NP_469562.1 CDS lin0217 NC_003212.1 209860 211074 D similar to xylose repressor; hypothetical protein 209860..211074 Listeria innocua Clip11262 1128621 NP_469563.1 CDS lin0218 NC_003212.1 211109 211987 D similar to sugar ABC transporters, permease proteins; hypothetical protein 211109..211987 Listeria innocua Clip11262 1128622 NP_469564.1 CDS lin0219 NC_003212.1 211987 212835 D similar to sugar ABC transporter, permease protein; hypothetical protein 211987..212835 Listeria innocua Clip11262 1128624 NP_469565.1 CDS lin0220 NC_003212.1 212863 214119 D similar to sugar ABC transporter, sugar-binding protein; hypothetical protein 212863..214119 Listeria innocua Clip11262 1128625 NP_469566.1 CDS lin0221 NC_003212.1 214202 217504 D similar to alpha-xylosidase and alpha-glucosidase; hypothetical protein 214202..217504 Listeria innocua Clip11262 1128626 NP_469567.1 CDS lin0222 NC_003212.1 217507 219798 D similar to alpha-glucosidase; hypothetical protein 217507..219798 Listeria innocua Clip11262 1128628 NP_469568.1 CDS lin0223 NC_003212.1 219802 221463 D similar to oligo-1,6-glucosidase; hypothetical protein 219802..221463 Listeria innocua Clip11262 1128630 NP_469569.1 CDS lin0224 NC_003212.1 221563 222336 D hypothetical protein 221563..222336 Listeria innocua Clip11262 1128631 NP_469570.1 CDS lin0225 NC_003212.1 222628 223845 D similar to Bacillus subtilis YabE protein; hypothetical protein 222628..223845 Listeria innocua Clip11262 1128632 NP_469571.1 CDS lin0226 NC_003212.1 223947 224522 D similar to Bacillus subtilis YabF protein; hypothetical protein 223947..224522 Listeria innocua Clip11262 1128633 NP_469572.1 CDS ksgA NC_003212.1 224515 225402 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 224515..225402 Listeria innocua Clip11262 1128635 NP_469573.1 CDS lin0228 NC_003212.1 225522 225779 D highly similar to Bacillus subtilis Veg protein; hypothetical protein 225522..225779 Listeria innocua Clip11262 1128636 NP_469574.1 CDS ipk NC_003212.1 225918 226793 D similar to Bacillus subtilis YabH protein; An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 225918..226793 Listeria innocua Clip11262 1128637 NP_469575.1 CDS lin0230 NC_003212.1 226815 227552 D similar to a putative phospho-beta-glucosidase; hypothetical protein 226815..227552 Listeria innocua Clip11262 1128638 NP_469576.1 CDS lin0231 NC_003212.1 227716 228534 D similar to PurR, transcription repressor of purine operon of Bacillus subtilis; pur operon repressor 227716..228534 Listeria innocua Clip11262 1128639 NP_469577.1 CDS lin0232 NC_003212.1 228707 229384 D lin0232; hypothetical protein 228707..229384 Listeria innocua Clip11262 1128640 NP_469578.1 CDS lin0233 NC_003212.1 229433 230125 D ABC transporter, ATP-binding protein 229433..230125 Listeria innocua Clip11262 1128641 NP_469579.1 CDS lin0234 NC_003212.1 230122 231330 D similar to membrane protein (putative ABC transporter component); hypothetical protein 230122..231330 Listeria innocua Clip11262 1128642 NP_469580.1 CDS lin0235 NC_003212.1 232017 232325 D similar to Bacillus subtilis SpoVG protein; stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus; regulatory protein SpoVG 232017..232325 Listeria innocua Clip11262 1128643 NP_469581.1 CDS lin0236 NC_003212.1 232444 232752 D similar to Bacillus subtilis SpoVG protein; stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus; regulatory protein SpoVG 232444..232752 Listeria innocua Clip11262 1128644 NP_469582.1 CDS glmU NC_003212.1 233141 234514 D highly similar to UDP-N-acetylglucosamine pyrophosphorylase; forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 233141..234514 Listeria innocua Clip11262 1128645 NP_469583.1 CDS prs NC_003212.1 234565 235521 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 234565..235521 Listeria innocua Clip11262 1128646 NP_469584.1 CDS lin0239 NC_003212.1 235882 236343 D Uncharacterized lipoprotein Lin0239 precursor.; hypothetical protein 235882..236343 Listeria innocua Clip11262 1128647 NP_469585.1 CDS lin0240 NC_003212.1 236392 236724 R hypothetical protein complement(236392..236724) Listeria innocua Clip11262 1128648 NP_469586.1 CDS lin0241 NC_003212.1 236791 237465 R lin0241; hypothetical protein complement(236791..237465) Listeria innocua Clip11262 1128649 NP_469587.1 CDS ldh NC_003212.1 237542 238483 R similar to L-lactate dehydrogenase; Converts (S)-lactate and NAD(+) to pyruvate and NADH; L-lactate dehydrogenase complement(237542..238483) Listeria innocua Clip11262 1128650 NP_469588.1 CDS lin0243 NC_003212.1 238777 239400 D similar to Bacillus subtilis general stress protein; the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 238777..239400 Listeria innocua Clip11262 1128651 NP_469589.1 CDS lin0244 NC_003212.1 239491 240075 D lin0244; hypothetical protein 239491..240075 Listeria innocua Clip11262 1128652 NP_469590.1 CDS lin0245 NC_003212.1 240182 240736 D similar to peptidyl-tRNA hydrolase; Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 240182..240736 Listeria innocua Clip11262 1128653 NP_469591.1 CDS mfd NC_003212.1 240860 244399 D transcription-repair coupling factor 240860..244399 Listeria innocua Clip11262 1128654 NP_469592.1 CDS lin0247 NC_003212.1 244430 246019 D conserved membrane-spanning protein; hypothetical protein 244430..246019 Listeria innocua Clip11262 1128655 NP_469593.1 CDS lin0248 NC_003212.1 246042 246320 D highly similar to Bacillus subtilis YabO protein; hypothetical protein 246042..246320 Listeria innocua Clip11262 1128656 NP_469594.1 CDS lin0249 NC_003212.1 246546 246932 D similar to Bacillus subtilis DivIC protein; hypothetical protein 246546..246932 Listeria innocua Clip11262 1128657 NP_469595.1 CDS lin0250 NC_003212.1 247083 247511 D hypothetical protein 247083..247511 Listeria innocua Clip11262 1128658 NP_469596.1 CDS lin0251 NC_003212.1 247622 249568 D hypothetical protein 247622..249568 Listeria innocua Clip11262 1128659 NP_469597.1 CDS lin0252 NC_003212.1 249916 251988 D highly similar to cell division protein ftsH; hypothetical protein 249916..251988 Listeria innocua Clip11262 1128660 NP_469598.1 CDS lin0253 NC_003212.1 252104 252883 D Type III pantothenate kinase; type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 252104..252883 Listeria innocua Clip11262 1128661 NP_469599.1 CDS hslO NC_003212.1 252899 253783 D 33 kDa chaperonin (Heat shock protein 33 homolog) (HSP33); becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 252899..253783 Listeria innocua Clip11262 1128662 NP_469600.1 CDS lin0255 NC_003212.1 253900 254826 D highly similar to cysteine synthase; hypothetical protein 253900..254826 Listeria innocua Clip11262 1128663 NP_469601.1 CDS lin0256 NC_003212.1 255724 256539 D highly similar to dihydropteroate synthases; hypothetical protein 255724..256539 Listeria innocua Clip11262 1128664 NP_469602.1 CDS lin0257 NC_003212.1 256553 256927 D highly similar to dihydroneopterin aldolase; hypothetical protein 256553..256927 Listeria innocua Clip11262 1128665 NP_469603.1 CDS lin0258 NC_003212.1 256920 257399 D similar to 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase; hypothetical protein 256920..257399 Listeria innocua Clip11262 1128666 NP_469604.1 CDS lin0259 NC_003212.1 257475 258470 D hypothetical protein 257475..258470 Listeria innocua Clip11262 1128667 NP_469605.1 CDS lysS NC_003212.1 258585 260081 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 258585..260081 Listeria innocua Clip11262 1128668 NP_469606.1 CDS lin0261 NC_003212.1 271618 272076 D highly similar to transcription repressor of class III stress genes (CtsR); hypothetical protein 271618..272076 Listeria innocua Clip11262 1128675 NP_469607.1 CDS lin0262 NC_003212.1 272089 272607 D similar to Bacillus subtilis YacH protein; hypothetical protein 272089..272607 Listeria innocua Clip11262 1128676 NP_469608.1 CDS lin0263 NC_003212.1 272604 273626 D similar to arginine kinase; ATP:guanido phosphotransferase 272604..273626 Listeria innocua Clip11262 1128677 NP_469609.1 CDS clpC NC_003212.1 273655 276117 D endopeptidase Clp ATP-binding chain C 273655..276117 Listeria innocua Clip11262 1128678 NP_469610.1 CDS lin0265 NC_003212.1 276272 277645 D similar to DNA repair protein Sms; Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 276272..277645 Listeria innocua Clip11262 1128679 NP_469611.1 CDS lin0266 NC_003212.1 277779 278852 D highly similar to Bacillus subtilis YacL protein; hypothetical protein 277779..278852 Listeria innocua Clip11262 1128680 NP_469612.1 CDS ispD NC_003212.1 278872 279570 D similar to nucleotidylyl transferase, pyrophosphorylase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 278872..279570 Listeria innocua Clip11262 1128681 NP_469613.1 CDS ispF NC_003212.1 279563 280036 D similar to Bacillus subtilis YacN protein; catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 279563..280036 Listeria innocua Clip11262 1128682 NP_469614.1 CDS gltX NC_003212.1 280055 281530 D highly similar to glutamyl-tRNA synthetase; Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 280055..281530 Listeria innocua Clip11262 1128683 NP_469615.1 CDS lin0270 NC_003212.1 281929 282543 D similar to serine O-acetyltransferase; hypothetical protein 281929..282543 Listeria innocua Clip11262 1128684 NP_469616.1 CDS cysS NC_003212.1 282550 283965 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 282550..283965 Listeria innocua Clip11262 1128686 NP_469617.1 CDS lin0272 NC_003212.1 283969 284379 D highly similar to Bacillus subtilis YazC protein; hypothetical protein 283969..284379 Listeria innocua Clip11262 1128687 NP_469618.1 CDS lin0273 NC_003212.1 284379 285134 D similar to conserved hypothetical proteins like to Bacillus subtilis YacO protein; hypothetical protein 284379..285134 Listeria innocua Clip11262 1128688 NP_469619.1 CDS lin0274 NC_003212.1 285137 285649 D similar to Bacillus subtilis Yacp protein; hypothetical protein 285137..285649 Listeria innocua Clip11262 1128690 NP_469620.1 CDS sigH NC_003212.1 285730 286335 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 285730..286335 Listeria innocua Clip11262 1128691 NP_469621.1 CDS rpmG NC_003212.1 286439 286588 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 286439..286588 Listeria innocua Clip11262 1128692 NP_469622.1 CDS secE NC_003212.1 286608 286787 D highly similar to preprotein translocase subunit; forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 286608..286787 Listeria innocua Clip11262 1128693 NP_469623.1 CDS nusG NC_003212.1 286917 287450 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 286917..287450 Listeria innocua Clip11262 1128694 NP_469624.1 CDS lin0279 NC_003212.1 287505 287975 D lin0279; hypothetical protein 287505..287975 Listeria innocua Clip11262 1128695 NP_469625.1 CDS rplK NC_003212.1 288102 288527 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 288102..288527 Listeria innocua Clip11262 1128696 NP_469626.1 CDS rplA NC_003212.1 288567 289256 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 288567..289256 Listeria innocua Clip11262 1128697 NP_469627.1 CDS rplJ NC_003212.1 289504 290004 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 289504..290004 Listeria innocua Clip11262 1128698 NP_469628.1 CDS rplL NC_003212.1 290083 290445 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 290083..290445 Listeria innocua Clip11262 1128699 NP_469629.1 CDS lin0284 NC_003212.1 290588 291193 D hypothetical protein 290588..291193 Listeria innocua Clip11262 1128700 NP_469630.1 CDS rpoB NC_003212.1 291763 295317 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 291763..295317 Listeria innocua Clip11262 1128701 NP_469631.1 CDS rpoC NC_003212.1 295487 299092 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 295487..299092 Listeria innocua Clip11262 1128702 NP_469632.1 CDS lin0287 NC_003212.1 299168 299713 D hypothetical protein 299168..299713 Listeria innocua Clip11262 1128703 NP_469633.1 CDS lin0288 NC_003212.1 299779 301239 D similar to phospho-beta-glucosidase; hypothetical protein 299779..301239 Listeria innocua Clip11262 1128704 NP_469634.1 CDS lin0289 NC_003212.1 301402 302538 D similar to succinyldiaminopimelate desuccinylase; dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica; succinyl-diaminopimelate desuccinylase 301402..302538 Listeria innocua Clip11262 1128705 NP_469635.1 CDS lin0290 NC_003212.1 302762 304279 D internalin-like protein 302762..304279 Listeria innocua Clip11262 1128706 NP_469636.1 CDS lin0291 NC_003212.1 304380 304796 D similar to transcriptional regulators; hypothetical protein 304380..304796 Listeria innocua Clip11262 1128707 NP_469637.1 CDS lin0292 NC_003212.1 304803 305762 D similar to other proteins; hypothetical protein 304803..305762 Listeria innocua Clip11262 1128709 NP_469638.1 CDS lin0293 NC_003212.1 305833 306468 D similar to phosphoglycerate mutase; hypothetical protein 305833..306468 Listeria innocua Clip11262 1128710 NP_469639.1 CDS lin0294 NC_003212.1 306552 308438 D similar to transporter; hypothetical protein 306552..308438 Listeria innocua Clip11262 1128711 NP_469640.1 CDS lin0295 NC_003212.1 308467 309552 R similar to internalin proteins; hypothetical protein complement(308467..309552) Listeria innocua Clip11262 1128712 NP_469641.1 CDS lin0296 NC_003212.1 309687 310313 R lin0296; hypothetical protein complement(309687..310313) Listeria innocua Clip11262 1128713 NP_469642.1 CDS lin0297 NC_003212.1 310314 311750 R highly similar to phospho-beta-glucosidase; hypothetical protein complement(310314..311750) Listeria innocua Clip11262 1128714 NP_469643.1 CDS lin0298 NC_003212.1 311870 312682 R conserved hypothetical protein similar to Bacillus subtilis YxeH protein; hypothetical protein complement(311870..312682) Listeria innocua Clip11262 1128716 NP_469644.1 CDS lin0299 NC_003212.1 312819 313322 D lin0299; hypothetical protein 312819..313322 Listeria innocua Clip11262 1128717 NP_469645.1 CDS lin0300 NC_003212.1 313357 314022 R lin0300; hypothetical protein complement(313357..314022) Listeria innocua Clip11262 1128718 NP_469646.1 CDS lin0301 NC_003212.1 314264 315106 R hypothetical protein complement(314264..315106) Listeria innocua Clip11262 1128719 NP_469647.1 CDS lin0302 NC_003212.1 315123 315944 R hypothetical protein complement(315123..315944) Listeria innocua Clip11262 1128720 NP_469648.1 CDS lin0303 NC_003212.1 316061 317032 D similar to oxidoreductase; hypothetical protein 316061..317032 Listeria innocua Clip11262 1128721 NP_469649.1 CDS lin0304 NC_003212.1 317072 318172 R similar to sugar ABC transporter, ATP-binding protein; hypothetical protein complement(317072..318172) Listeria innocua Clip11262 1128722 NP_469650.1 CDS lin0305 NC_003212.1 318463 320613 D highly similar to anaerobic ribonucleoside-triphosphate reductase; Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 318463..320613 Listeria innocua Clip11262 1128723 NP_469651.1 CDS lin0306 NC_003212.1 320606 321157 D highly similar to anaerobic ribonucleotide reductase activator protein; hypothetical protein 320606..321157 Listeria innocua Clip11262 1128725 NP_469652.1 CDS lin0307 NC_003212.1 321395 322054 D similar to ABC transporters (ATP-binding protein); hypothetical protein 321395..322054 Listeria innocua Clip11262 1128726 NP_469653.1 CDS lin0308 NC_003212.1 322056 322841 D hypothetical protein 322056..322841 Listeria innocua Clip11262 1128728 NP_469654.1 CDS lin0309 NC_003212.1 322904 323575 R lin0309; hypothetical protein complement(322904..323575) Listeria innocua Clip11262 1128729 NP_469655.1 CDS lin0310 NC_003212.1 323725 324504 R hypothetical protein complement(323725..324504) Listeria innocua Clip11262 1128730 NP_469656.1 CDS lin0311 NC_003212.1 324595 325257 R similar to ABC transporter permease protein; hypothetical protein complement(324595..325257) Listeria innocua Clip11262 1128731 NP_469657.1 CDS lin0312 NC_003212.1 325254 326270 R similar to ABC transporter (ATP-binding protein); hypothetical protein complement(325254..326270) Listeria innocua Clip11262 1128732 NP_469658.1 CDS lin0313 NC_003212.1 326285 327106 R putative lipoprotein complement(326285..327106) Listeria innocua Clip11262 1128734 NP_469659.1 CDS lin0314 NC_003212.1 327489 328670 D similar to aminotransferase; produces methionine from 2-keto-4-methylthiobutyrate and glutamine in vitro; mutations do not affect methionine salvage in vivo however; transaminase 327489..328670 Listeria innocua Clip11262 1128735 NP_469660.1 CDS lin0315 NC_003212.1 328882 329595 D similar to two-component response regulator; hypothetical protein 328882..329595 Listeria innocua Clip11262 1128736 NP_469661.1 CDS lin0316 NC_003212.1 329779 331611 D similar to two-component sensor histidine kinase; hypothetical protein 329779..331611 Listeria innocua Clip11262 1128737 NP_469662.1 CDS lin0317 NC_003212.1 331608 332930 D similar to Bacillus subtilis YycH protein; hypothetical protein 331608..332930 Listeria innocua Clip11262 1128739 NP_469663.1 CDS lin0318 NC_003212.1 332933 333772 D similar to Bacillus subtilis YycI protein; hypothetical protein 332933..333772 Listeria innocua Clip11262 1128741 NP_469664.1 CDS lin0319 NC_003212.1 333890 334720 D conserved hypothetical protein similar to Bacillus subtilis YycJ protein; hypothetical protein 333890..334720 Listeria innocua Clip11262 1128742 NP_469665.1 CDS lin0320 NC_003212.1 334818 336317 D similar to heat-shock protein htrA serine protease; hypothetical protein 334818..336317 Listeria innocua Clip11262 1128743 NP_469666.1 CDS lin0321 NC_003212.1 337002 337481 D conserved hypothetical protein, highly similar to Bacillus subtilis YydA proteinYyd; SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 337002..337481 Listeria innocua Clip11262 1128744 NP_469667.1 CDS lin0322 NC_003212.1 337513 338376 R similar to transcription regulator LysR-gltR family; hypothetical protein complement(337513..338376) Listeria innocua Clip11262 1128745 NP_469668.1 CDS lin0323 NC_003212.1 338495 339232 D similar to FMN-containing NADPH-linked nitro/flavin reductase; hypothetical protein 338495..339232 Listeria innocua Clip11262 1128746 NP_469669.1 CDS lin0324 NC_003212.1 339443 340081 D lin0324; hypothetical protein 339443..340081 Listeria innocua Clip11262 1128747 NP_469670.1 CDS lin0325 NC_003212.1 340087 341958 R similar to transcriptional antiterminator (BglG family); hypothetical protein complement(340087..341958) Listeria innocua Clip11262 1128748 NP_469671.1 CDS lin0326 NC_003212.1 342057 343370 R similar to PTS beta-glucoside-specific enzyme IIC component; hypothetical protein complement(342057..343370) Listeria innocua Clip11262 1128749 NP_469672.1 CDS lin0327 NC_003212.1 343375 343665 R similar to PTS beta-glucoside-specific enzyme IIB component; hypothetical protein complement(343375..343665) Listeria innocua Clip11262 1128750 NP_469673.1 CDS lin0328 NC_003212.1 343682 345073 R similar to phospho-beta-glucosidase and phospho-beta-galactosidase; hypothetical protein complement(343682..345073) Listeria innocua Clip11262 1128752 NP_469674.1 CDS lin0329 NC_003212.1 345066 345407 R similar to PTS beta-glucoside-specific enzyme IIA component; hypothetical protein complement(345066..345407) Listeria innocua Clip11262 1128753 NP_469675.1 CDS lin0330 NC_003212.1 345574 345858 D lin0330; hypothetical protein 345574..345858 Listeria innocua Clip11262 1128755 NP_469676.1 CDS lin0331 NC_003212.1 345892 346443 D putative secreted, lysin rich protein 345892..346443 Listeria innocua Clip11262 1128756 NP_469677.1 CDS lin0332 NC_003212.1 346543 347760 R similar to putative permeases; hypothetical protein complement(346543..347760) Listeria innocua Clip11262 1128757 NP_469678.1 CDS lin0333 NC_003212.1 347988 349070 D similar to low specificity L-allo-threonine aldolase; hypothetical protein 347988..349070 Listeria innocua Clip11262 1128758 NP_469679.1 CDS lin0334 NC_003212.1 349128 349514 R lin0334; hypothetical protein complement(349128..349514) Listeria innocua Clip11262 1128759 NP_469680.1 CDS lin0335 NC_003212.1 349628 350773 D lin0335; hypothetical protein 349628..350773 Listeria innocua Clip11262 1128760 NP_469681.1 CDS lin0336 NC_003212.1 350788 351216 D lin0336; hypothetical protein 350788..351216 Listeria innocua Clip11262 1128761 NP_469682.1 CDS lin0337 NC_003212.1 351479 353140 D hypothetical protein 351479..353140 Listeria innocua Clip11262 1128762 NP_469683.1 CDS lin0338 NC_003212.1 353186 353986 D lin0338; hypothetical protein 353186..353986 Listeria innocua Clip11262 1128763 NP_469684.1 CDS lin0339 NC_003212.1 354060 354845 D hypothetical protein 354060..354845 Listeria innocua Clip11262 1128764 NP_469685.1 CDS lin0340 NC_003212.1 355068 355742 D similar to thiamin biosynthesis protein; hypothetical protein 355068..355742 Listeria innocua Clip11262 1128765 NP_469686.1 CDS lin0341 NC_003212.1 355735 356544 D similar to hydroxyethylthiazole kinase (ThiM); catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 355735..356544 Listeria innocua Clip11262 1128767 NP_469687.1 CDS lin0342 NC_003212.1 356541 357344 D similar to phosphomethylpyrimidine kinase (ThiD); hypothetical protein 356541..357344 Listeria innocua Clip11262 1128769 NP_469688.1 CDS thiE NC_003212.1 357341 357985 D similar to thiamin-phosphate pyrophosphorylase (ThiE); Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 357341..357985 Listeria innocua Clip11262 1128771 NP_469689.1 CDS lin0344 NC_003212.1 358011 359426 R similar to phospho-beta-glucosidase; hypothetical protein complement(358011..359426) Listeria innocua Clip11262 1128772 NP_469690.1 CDS lin0345 NC_003212.1 359634 359825 R lin0345; hypothetical protein complement(359634..359825) Listeria innocua Clip11262 1128773 NP_469691.1 CDS lin0346 NC_003212.1 360148 360807 D hypothetical protein 360148..360807 Listeria innocua Clip11262 1128774 NP_469692.1 CDS lin0347 NC_003212.1 360974 361366 D hypothetical protein 360974..361366 Listeria innocua Clip11262 1128775 NP_469693.1 CDS lin0348 NC_003212.1 361400 362173 R hypothetical protein complement(361400..362173) Listeria innocua Clip11262 1128776 NP_469694.1 CDS lin0349 NC_003212.1 362328 362789 D lin0349; hypothetical protein 362328..362789 Listeria innocua Clip11262 1128777 NP_469695.1 CDS lin0350 NC_003212.1 363055 363957 D similar to transcriptional regulators; hypothetical protein 363055..363957 Listeria innocua Clip11262 1128778 NP_469696.1 CDS lin0351 NC_003212.1 364120 364959 D similar to transcriptional regulators; hypothetical protein 364120..364959 Listeria innocua Clip11262 1128779 NP_469697.1 CDS lin0352 NC_003212.1 <365172 369221 D similar to cell surface proteins (LPXTG motif); hypothetical protein <365172..369221 Listeria innocua Clip11262 1128780 NP_469698.1 CDS lin0353 NC_003212.1 369359 370039 D lin0353; hypothetical protein 369359..370039 Listeria innocua Clip11262 1128781 NP_469699.1 CDS lin0354 NC_003212.1 370223 372040 R similar to internalin, putative peptidoglycan bound protein (LPXTG motif); hypothetical protein complement(370223..372040) Listeria innocua Clip11262 1128782 NP_469700.1 CDS lin0355 NC_003212.1 372553 372837 D lin0355; hypothetical protein 372553..372837 Listeria innocua Clip11262 1128783 NP_469701.1 CDS lin0356 NC_003212.1 372838 373206 D lin0356; hypothetical protein 372838..373206 Listeria innocua Clip11262 1128785 NP_469702.1 CDS lin0357 NC_003212.1 373203 373742 D lin0357; hypothetical protein 373203..373742 Listeria innocua Clip11262 1128787 NP_469703.1 CDS lin0358 NC_003212.1 373864 374235 D weakly similar to inorganic pyrophosphatase; hypothetical protein 373864..374235 Listeria innocua Clip11262 1128788 NP_469704.1 CDS lin0359 NC_003212.1 374315 374647 R lin0359; hypothetical protein complement(374315..374647) Listeria innocua Clip11262 1128789 NP_469705.1 CDS lin0360 NC_003212.1 374713 376710 R similar to transketolase; hypothetical protein complement(374713..376710) Listeria innocua Clip11262 1128790 NP_469706.1 CDS lin0361 NC_003212.1 376712 377368 R similar to transaldolase; similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; putative translaldolase complement(376712..377368) Listeria innocua Clip11262 1128791 NP_469707.1 CDS lin0362 NC_003212.1 377415 378179 R similar to dehydrogenase/reductase; short chain dehydrogenase complement(377415..378179) Listeria innocua Clip11262 1128793 NP_469708.1 CDS lin0363 NC_003212.1 378204 378650 R similar to sugar-phosphate isomerase; hypothetical protein complement(378204..378650) Listeria innocua Clip11262 1128794 NP_469709.1 CDS lin0364 NC_003212.1 378657 379421 R similar to triosephosphate isomerase; hypothetical protein complement(378657..379421) Listeria innocua Clip11262 1128795 NP_469710.1 CDS lin0365 NC_003212.1 379425 380075 R similar to dihydroxyacetone kinase; hypothetical protein complement(379425..380075) Listeria innocua Clip11262 1128797 NP_469711.1 CDS lin0366 NC_003212.1 380097 381092 R similar to dihydroxyacetone kinase; hypothetical protein complement(380097..381092) Listeria innocua Clip11262 1128799 NP_469712.1 CDS lin0367 NC_003212.1 381114 381455 R lin0367; hypothetical protein complement(381114..381455) Listeria innocua Clip11262 1128800 NP_469713.1 CDS lin0368 NC_003212.1 381471 381902 R lin0368; hypothetical protein complement(381471..381902) Listeria innocua Clip11262 1128801 NP_469714.1 CDS lin0369 NC_003212.1 381987 382364 R phosphotransferase mannnose-specific family component IIA complement(381987..382364) Listeria innocua Clip11262 1128802 NP_469715.1 CDS lin0370 NC_003212.1 382547 383311 D highly similar to regulatory proteins (DeoR family); hypothetical protein 382547..383311 Listeria innocua Clip11262 1128803 NP_469716.1 CDS lin0371 NC_003212.1 383377 383787 D hypothetical protein 383377..383787 Listeria innocua Clip11262 1128804 NP_469717.1 CDS lin0372 NC_003212.1 383886 385856 D cell surface protein 383886..385856 Listeria innocua Clip11262 1128805 NP_469718.1 CDS lin0373 NC_003212.1 385898 387424 R similar to fatty-acid--CoA ligase; hypothetical protein complement(385898..387424) Listeria innocua Clip11262 1128806 NP_469719.1 CDS lin0374 NC_003212.1 387663 389183 D similar to Flavocytochrome C Fumarate Reductase chain A; Reduces fumarate to succinate in anaerobic bacterial respiration; fumarate reductase flavoprotein subunit 387663..389183 Listeria innocua Clip11262 1128807 NP_469720.1 CDS lin0375 NC_003212.1 389356 390372 D similar to oxidoreductase; hypothetical protein 389356..390372 Listeria innocua Clip11262 1128808 NP_469721.1 CDS lin0376 NC_003212.1 390573 391019 D similar to PTS system, enzyme IIA component; hypothetical protein 390573..391019 Listeria innocua Clip11262 1128809 NP_469722.1 CDS lin0377 NC_003212.1 391033 392427 D similar to PTS system, fructose-specific enzyme IIBC component; hypothetical protein 391033..392427 Listeria innocua Clip11262 1128810 NP_469723.1 CDS lin0378 NC_003212.1 392427 393287 D similar to D-fructose-1,6-biphosphate aldolase; hypothetical protein 392427..393287 Listeria innocua Clip11262 1128812 NP_469724.1 CDS lin0379 NC_003212.1 393344 394114 D similar to transcriptional regulator (DeoR family); hypothetical protein 393344..394114 Listeria innocua Clip11262 1128813 NP_469725.1 CDS lin0380 NC_003212.1 394146 394889 R similar to conserved hypothetical integral membrane protein; hypothetical protein complement(394146..394889) Listeria innocua Clip11262 1128814 NP_469726.1 CDS lin0381 NC_003212.1 394886 395065 R similar to conserved hypothetical protein; hypothetical protein complement(394886..395065) Listeria innocua Clip11262 1128815 NP_469727.1 CDS lin0382 NC_003212.1 395139 395768 R similar to Salmonella typhimurium peptidase E; hypothetical protein complement(395139..395768) Listeria innocua Clip11262 1128816 NP_469728.1 CDS lin0383 NC_003212.1 395862 396809 D similar to transcription regulator; hypothetical protein 395862..396809 Listeria innocua Clip11262 1128817 NP_469729.1 CDS lin0384 NC_003212.1 396938 398422 D similar to conserved hypothetical protein; hypothetical protein 396938..398422 Listeria innocua Clip11262 1128818 NP_469730.1 CDS lin0385 NC_003212.1 398419 399579 D conserved hypothetical protein, putative lipoprotein; hypothetical protein 398419..399579 Listeria innocua Clip11262 1128820 NP_469731.1 CDS lin0386 NC_003212.1 399597 400862 D conserved hypothetical protein similar to Bacillus subtilis YwbN protein; hypothetical protein 399597..400862 Listeria innocua Clip11262 1128821 NP_469732.1 CDS lin0387 NC_003212.1 400935 401444 D similar to different proteins; hypothetical protein 400935..401444 Listeria innocua Clip11262 1128822 NP_469733.1 CDS lin0388 NC_003212.1 401541 402260 D conserved hypothetical protein, highly similar to Bacillus subtilis YeeI protein; hypothetical protein 401541..402260 Listeria innocua Clip11262 1128823 NP_469734.1 CDS lin0389 NC_003212.1 402297 402632 D hypothetical protein 402297..402632 Listeria innocua Clip11262 1128824 NP_469735.1 CDS lin0390 NC_003212.1 402673 403386 R similar to transcription regulator (GntR family); hypothetical protein complement(402673..403386) Listeria innocua Clip11262 1128825 NP_469736.1 CDS lin0391 NC_003212.1 403543 404985 D similar to beta-glucosidase; hypothetical protein 403543..404985 Listeria innocua Clip11262 1128826 NP_469737.1 CDS lin0392 NC_003212.1 404978 406312 D similar to PTS betaglucoside-specific enzyme IIC component; hypothetical protein 404978..406312 Listeria innocua Clip11262 1128828 NP_469738.1 CDS lin0393 NC_003212.1 406330 406632 D similar to PTS betaglucoside-specific enzyme IIB component; hypothetical protein 406330..406632 Listeria innocua Clip11262 1128829 NP_469739.1 CDS lin0394 NC_003212.1 406719 406913 D lin0394; hypothetical protein 406719..406913 Listeria innocua Clip11262 1128830 NP_469740.1 CDS lin0395 NC_003212.1 406952 407872 R similar to putative transcription regulator; hypothetical protein complement(406952..407872) Listeria innocua Clip11262 1128831 NP_469741.1 CDS lin0396 NC_003212.1 407973 408392 D lin0396; hypothetical protein 407973..408392 Listeria innocua Clip11262 1128832 NP_469742.1 CDS lin0397 NC_003212.1 408916 409278 D lin0397; hypothetical protein 408916..409278 Listeria innocua Clip11262 1128833 NP_469743.1 CDS lin0398 NC_003212.1 409269 410879 D lin0398; hypothetical protein 409269..410879 Listeria innocua Clip11262 1128835 NP_469744.1 CDS lin0399 NC_003212.1 410882 411640 D lin0399; hypothetical protein 410882..411640 Listeria innocua Clip11262 1128837 NP_469745.1 CDS lin0400 NC_003212.1 411681 412442 R similar to Bacillus subtilis transcription repressor of myo-inositol catabolism operon IolR; hypothetical protein complement(411681..412442) Listeria innocua Clip11262 1128838 NP_469746.1 CDS lin0401 NC_003212.1 412638 414104 D highly similar to Bacillus subtilis methylmalonate-semialdehyde dehydrogenase IolA; hypothetical protein 412638..414104 Listeria innocua Clip11262 1128839 NP_469747.1 CDS lin0402 NC_003212.1 414117 414938 D similar to Bacillus subtilis IolB protein; hypothetical protein 414117..414938 Listeria innocua Clip11262 1128840 NP_469748.1 CDS lin0403 NC_003212.1 414955 415932 D similar to Bacillus subtilis IolC protein and to fructokinase; hypothetical protein 414955..415932 Listeria innocua Clip11262 1128841 NP_469749.1 CDS lin0404 NC_003212.1 415944 417860 D similar to Bacillus subtilis IolD protein, to acetolactate synthase; hypothetical protein 415944..417860 Listeria innocua Clip11262 1128842 NP_469750.1 CDS lin0405 NC_003212.1 417992 418390 D similar to Bacillus subtilis YhdG protein; hypothetical protein 417992..418390 Listeria innocua Clip11262 1128843 NP_469751.1 CDS lin0406 NC_003212.1 418455 418823 D lin0406; hypothetical protein 418455..418823 Listeria innocua Clip11262 1128844 NP_469752.1 CDS ltrA NC_003212.1 418848 419963 R low temperature requirement protein A complement(418848..419963) Listeria innocua Clip11262 1128845 NP_469753.1 CDS lin0408 NC_003212.1 420093 420758 D similar to uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 420093..420758 Listeria innocua Clip11262 1128846 NP_469754.1 CDS lin0409 NC_003212.1 420923 421222 D lin0409; hypothetical protein 420923..421222 Listeria innocua Clip11262 1128847 NP_469755.1 CDS lin0410 NC_003212.1 421219 422163 D highly similar to Bacillus subtilis YqfA protein; hypothetical protein 421219..422163 Listeria innocua Clip11262 1128849 NP_469756.1 CDS lin0411 NC_003212.1 422198 422650 D lin0411; hypothetical protein 422198..422650 Listeria innocua Clip11262 1128850 NP_469757.1 CDS lin0412 NC_003212.1 422796 423479 D similar to L. monocytogenes extracellular P60 protein; hypothetical protein 422796..423479 Listeria innocua Clip11262 1128851 NP_469758.1 CDS lin0413 NC_003212.1 423541 423966 D weakly similar to blasticidin S-acetyltransferase; hypothetical protein 423541..423966 Listeria innocua Clip11262 1128852 NP_469759.1 CDS proC NC_003212.1 423970 424770 R similar to 1-pyrroline-5-carboxylate reductase (ProC); catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(423970..424770) Listeria innocua Clip11262 1128853 NP_469760.1 CDS lin0415 NC_003212.1 425715 426947 D cell surface protein 425715..426947 Listeria innocua Clip11262 1128854 NP_469761.1 CDS lin0416 NC_003212.1 427069 427719 D similar to transcription regulator; hypothetical protein 427069..427719 Listeria innocua Clip11262 1128855 NP_469762.1 CDS lin0417 NC_003212.1 427737 428363 D hypothetical protein 427737..428363 Listeria innocua Clip11262 1128856 NP_469763.1 CDS lin0418 NC_003212.1 428381 429055 D similar to ABC transporter, ATP-binding protein; hypothetical protein 428381..429055 Listeria innocua Clip11262 1128857 NP_469764.1 CDS lin0419 NC_003212.1 429040 430218 D similar to ABC transporter, ATP-binding protein; hypothetical protein 429040..430218 Listeria innocua Clip11262 1128859 NP_469765.1 CDS lin0420 NC_003212.1 430451 430933 D hypothetical protein 430451..430933 Listeria innocua Clip11262 1128860 NP_469766.1 CDS lin0421 NC_003212.1 431103 431561 D similar to phosphotransferase system enzyme IIA; hypothetical protein 431103..431561 Listeria innocua Clip11262 1128861 NP_469767.1 CDS lin0422 NC_003212.1 431558 431890 D similar to fructose-specific phosphotransferase enzyme IIB; hypothetical protein 431558..431890 Listeria innocua Clip11262 1128863 NP_469768.1 CDS lin0423 NC_003212.1 431894 433006 D similar to fructose-specific phosphotransferase enzyme IIC; hypothetical protein 431894..433006 Listeria innocua Clip11262 1128865 NP_469769.1 CDS lin0424 NC_003212.1 433028 435655 D highly similar to E. col YbgG protein, a putative sugar hydrolase; alpha-mannosidase 433028..435655 Listeria innocua Clip11262 1128866 NP_469770.1 CDS lin0425 NC_003212.1 435688 437622 D similar to transcriptional antiterminator (BglG family); hypothetical protein 435688..437622 Listeria innocua Clip11262 1128867 NP_469771.1 CDS lin0426 NC_003212.1 437756 438172 D lin0426; hypothetical protein 437756..438172 Listeria innocua Clip11262 1128868 NP_469772.1 CDS lin0427 NC_003212.1 438163 438549 D lin0427; hypothetical protein 438163..438549 Listeria innocua Clip11262 1128870 NP_469773.1 CDS lin0428 NC_003212.1 438657 439664 D similar to phosphate transport protein; hypothetical protein 438657..439664 Listeria innocua Clip11262 1128871 NP_469774.1 CDS lin0429 NC_003212.1 439680 440060 D similar to Bacillus subtilis YyaH protein; hypothetical protein 439680..440060 Listeria innocua Clip11262 1128872 NP_469775.1 CDS lin0430 NC_003212.1 440129 440521 D lin0430; hypothetical protein 440129..440521 Listeria innocua Clip11262 1128873 NP_469776.1 CDS lin0431 NC_003212.1 440534 440956 D lin0431; hypothetical protein 440534..440956 Listeria innocua Clip11262 1128874 NP_469777.1 CDS lin0432 NC_003212.1 440999 443599 R similar to phosphoenolpyruvate synthase; catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase complement(440999..443599) Listeria innocua Clip11262 1128875 NP_469778.1 CDS lin0433 NC_003212.1 443800 444675 R lin0433; hypothetical protein complement(443800..444675) Listeria innocua Clip11262 1128876 NP_469779.1 CDS lin0434 NC_003212.1 445109 445300 D lin0434; hypothetical protein 445109..445300 Listeria innocua Clip11262 1128877 NP_469780.1 CDS lin0435 NC_003212.1 445327 446136 D hypothetical protein 445327..446136 Listeria innocua Clip11262 1128878 NP_469781.1 CDS lin0436 NC_003212.1 446430 447830 D similar to endo-1,4-beta-xylanase; hypothetical protein 446430..447830 Listeria innocua Clip11262 1128879 NP_469782.1 CDS lin0437 NC_003212.1 447957 448160 D similar to putative transcription regulator; hypothetical protein 447957..448160 Listeria innocua Clip11262 1128880 NP_469783.1 CDS lin0438 NC_003212.1 448162 448572 D lin0438; hypothetical protein 448162..448572 Listeria innocua Clip11262 1128882 NP_469784.1 CDS lin0439 NC_003212.1 448625 448924 R lin0439; hypothetical protein complement(448625..448924) Listeria innocua Clip11262 1128883 NP_469785.1 CDS lin0440 NC_003212.1 449152 449964 D hypothetical protein 449152..449964 Listeria innocua Clip11262 1128884 NP_469786.1 CDS lin0441 NC_003212.1 450030 451280 R similar to rod shape-determining protein RodA; hypothetical protein complement(450030..451280) Listeria innocua Clip11262 1128885 NP_469787.1 CDS lstR NC_003212.1 451277 451708 R part of sigC operon that is induced by temperature upshift; lineage-specific thermal regulator protein complement(451277..451708) Listeria innocua Clip11262 1128886 NP_469788.1 CDS lin0443 NC_003212.1 451711 452259 R similar to RNA polymerase ECF-type sigma factor; part of sigC operon induced by temperature upshift; RNA polymerase factor sigma C complement(451711..452259) Listeria innocua Clip11262 1128888 NP_469789.1 CDS lin0444 NC_003212.1 452439 453296 R similar to Staphylococcus xylosus glucose uptake protein; hypothetical protein complement(452439..453296) Listeria innocua Clip11262 1128889 NP_469790.1 CDS lin0445 NC_003212.1 453477 455420 D similar to transcription antiterminator BglG family; hypothetical protein 453477..455420 Listeria innocua Clip11262 1128890 NP_469791.1 CDS lin0446 NC_003212.1 455420 455884 D similar to PTS fructose-specific enzyme IIA component; hypothetical protein 455420..455884 Listeria innocua Clip11262 1128892 NP_469792.1 CDS lin0448 NC_003212.1 456214 457320 D similar to PTS fructose-specific enzyme IIC component; hypothetical protein 456214..457320 Listeria innocua Clip11262 1128894 NP_469793.1 CDS lin0449 NC_003212.1 457336 459918 D similar to sugar hydrolase; hypothetical protein 457336..459918 Listeria innocua Clip11262 1128895 NP_469794.1 CDS lin0450 NC_003212.1 459941 460816 R similar to transcriptional regulator (LysR family); hypothetical protein complement(459941..460816) Listeria innocua Clip11262 1128896 NP_469795.1 CDS lin0451 NC_003212.1 460934 461503 D similar to acetyltransferase; hypothetical protein 460934..461503 Listeria innocua Clip11262 1128897 NP_469796.1 CDS lin0452 NC_003212.1 461517 462263 D similar to oxidoreductase; hypothetical protein 461517..462263 Listeria innocua Clip11262 1128898 NP_469797.1 CDS lin0453 NC_003212.1 462375 462884 D lin0453; hypothetical protein 462375..462884 Listeria innocua Clip11262 1128899 NP_469798.1 CDS lin0454 NC_003212.1 463138 469641 D similar to cell wall-associated protein precursor wapA (Bacillus subtilis); hypothetical protein 463138..469641 Listeria innocua Clip11262 1128900 NP_469799.1 CDS lin0455 NC_003212.1 470254 470808 D lin0455; hypothetical protein 470254..470808 Listeria innocua Clip11262 1128901 NP_469800.1 CDS lin0456 NC_003212.1 471205 471768 D lin0456; hypothetical protein 471205..471768 Listeria innocua Clip11262 1128902 NP_469801.1 CDS lin0457 NC_003212.1 472040 478081 D peptidoglycan binding protein 472040..478081 Listeria innocua Clip11262 1128903 NP_469802.1 CDS lin0458 NC_003212.1 478256 478723 R hypothetical protein complement(478256..478723) Listeria innocua Clip11262 1128904 NP_469803.1 CDS lin0459 NC_003212.1 478839 479684 D hypothetical protein 478839..479684 Listeria innocua Clip11262 1128905 NP_469804.1 CDS lin0460 NC_003212.1 479719 481002 R weakly similar to a module of peptide synthetase; hypothetical protein complement(479719..481002) Listeria innocua Clip11262 1128906 NP_469805.1 CDS lin0461 NC_003212.1 481129 483165 R similar to penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase); hypothetical protein complement(481129..483165) Listeria innocua Clip11262 1128908 NP_469806.1 CDS lin0462 NC_003212.1 483337 483639 D lin0462; hypothetical protein 483337..483639 Listeria innocua Clip11262 1128909 NP_469807.1 CDS lin0463 NC_003212.1 483778 484707 D similar to Bacillus subtilis transcription regulator LytR; hypothetical protein 483778..484707 Listeria innocua Clip11262 1128910 NP_469808.1 CDS lin0464 NC_003212.1 484770 485702 R similar to putative transcription regulator; hypothetical protein complement(484770..485702) Listeria innocua Clip11262 1128911 NP_469809.1 CDS lin0465 NC_003212.1 485841 486479 D conserved hypothetical protein, similar to yoaZ Bacillus subtilis; hypothetical protein 485841..486479 Listeria innocua Clip11262 1128912 NP_469810.1 CDS lin0466 NC_003212.1 486659 487384 D lin0466; hypothetical protein 486659..487384 Listeria innocua Clip11262 1128913 NP_469811.1 CDS lin0467 NC_003212.1 487428 488093 R hypothetical protein complement(487428..488093) Listeria innocua Clip11262 1128914 NP_469812.1 CDS lin0468 NC_003212.1 488113 488877 R lin0468; hypothetical protein complement(488113..488877) Listeria innocua Clip11262 1128915 NP_469813.1 CDS lin0469 NC_003212.1 489016 491181 R hypothetical protein complement(489016..491181) Listeria innocua Clip11262 1128916 NP_469814.1 CDS lin0470 NC_003212.1 491178 492326 R hypothetical protein complement(491178..492326) Listeria innocua Clip11262 1128917 NP_469815.1 CDS lin0471 NC_003212.1 492331 493278 R conserved hypothetical protein similar to Bacillus subtilis YeaC; hypothetical protein complement(492331..493278) Listeria innocua Clip11262 1128919 NP_469816.1 CDS lin0472 NC_003212.1 493434 495029 D hypothetical protein 493434..495029 Listeria innocua Clip11262 1128920 NP_469817.1 CDS lin0473 NC_003212.1 495162 496445 D similar to permeases; hypothetical protein 495162..496445 Listeria innocua Clip11262 1128921 NP_469818.1 CDS lin0474 NC_003212.1 496446 497546 D hypothetical protein 496446..497546 Listeria innocua Clip11262 1128923 NP_469819.1 CDS lin0475 NC_003212.1 497539 499089 D similar to hydantoinase; hypothetical protein 497539..499089 Listeria innocua Clip11262 1128925 NP_469820.1 CDS lin0476 NC_003212.1 499836 500888 D lin0476; hypothetical protein 499836..500888 Listeria innocua Clip11262 1128926 NP_469821.1 CDS lin0477 NC_003212.1 501337 503835 D lin0477; hypothetical protein 501337..503835 Listeria innocua Clip11262 1128927 NP_469822.1 CDS lin0478 NC_003212.1 504274 505497 D lin0478; hypothetical protein 504274..505497 Listeria innocua Clip11262 1128928 NP_469823.1 CDS lin0479 NC_003212.1 506066 506248 D lin0479; hypothetical protein 506066..506248 Listeria innocua Clip11262 1128929 NP_469824.1 CDS lin0480 NC_003212.1 506276 506446 D putative secreted protein 506276..506446 Listeria innocua Clip11262 1128930 NP_469825.1 CDS lin0482 NC_003212.1 506961 507521 D similar to putative transcriptional regulator; hypothetical protein 506961..507521 Listeria innocua Clip11262 1128932 NP_469826.1 CDS lin0483 NC_003212.1 507631 509331 D in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; myosin-cross-reactive antigen 507631..509331 Listeria innocua Clip11262 1128933 NP_469827.1 CDS lin0484 NC_003212.1 509482 510585 D similar to conserved hypothetical proteins, highly similar to Bacillus subtilis YloN protein; 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 509482..510585 Listeria innocua Clip11262 1128934 NP_469828.1 CDS lin0485 NC_003212.1 510674 511153 D lin0485; hypothetical protein 510674..511153 Listeria innocua Clip11262 1128935 NP_469829.1 CDS lin0486 NC_003212.1 511234 511779 D hypothetical protein 511234..511779 Listeria innocua Clip11262 1128936 NP_469830.1 CDS lin0487 NC_003212.1 511865 512230 D lin0487; iron regulated; catalyzes the release of heme from hemoglobin allowing bacterial pathogens to use the host heme as an iron source; heme-degrading monooxygenase IsdG 511865..512230 Listeria innocua Clip11262 1128937 NP_469831.1 CDS lin0488 NC_003212.1 512398 512973 D lin0488; hypothetical protein 512398..512973 Listeria innocua Clip11262 1128938 NP_469832.1 CDS rpmF NC_003212.1 513038 513208 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 513038..513208 Listeria innocua Clip11262 1128939 NP_469833.1 CDS lin0490 NC_003212.1 513300 514028 D lin0490; hypothetical protein 513300..514028 Listeria innocua Clip11262 1128940 NP_469834.1 CDS lin0491 NC_003212.1 514066 514959 R similar to transcriptional regulator (LysR family); hypothetical protein complement(514066..514959) Listeria innocua Clip11262 1128941 NP_469835.1 CDS lin0492 NC_003212.1 515157 517151 D similar to NADH:flavin oxidoreductase; hypothetical protein 515157..517151 Listeria innocua Clip11262 1128942 NP_469836.1 CDS aroE NC_003212.1 517251 518126 D similar to shikimate 5-dehydrogenase; AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 517251..518126 Listeria innocua Clip11262 1128943 NP_469837.1 CDS aroD NC_003212.1 518192 518950 D similar to 3-dehydroquinate dehydratase; catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase 518192..518950 Listeria innocua Clip11262 1128944 NP_469838.1 CDS lin0495 NC_003212.1 519047 519640 D weakly similar to esterase; hypothetical protein 519047..519640 Listeria innocua Clip11262 1128945 NP_469839.1 CDS lin0496 NC_003212.1 519826 520785 D similar to transmembrane protein; hypothetical protein 519826..520785 Listeria innocua Clip11262 1128946 NP_469840.1 CDS lin0497 NC_003212.1 520860 521084 D similar to Bacillus subtilis YnzC protein; hypothetical protein 520860..521084 Listeria innocua Clip11262 1128947 NP_469841.1 CDS lin0498 NC_003212.1 521248 521697 D similar to ribose 5-phosphate isomerase; hypothetical protein 521248..521697 Listeria innocua Clip11262 1128948 NP_469842.1 CDS lin0499 NC_003212.1 521694 522362 D similar to ribulose-5-phosphate 3 epimerase; hypothetical protein 521694..522362 Listeria innocua Clip11262 1128949 NP_469843.1 CDS lin0500 NC_003212.1 522369 523019 D similar to transaldolase; hypothetical protein 522369..523019 Listeria innocua Clip11262 1128950 NP_469844.1 CDS lin0501 NC_003212.1 523128 525188 D similar to transcription antiterminator BglG family; hypothetical protein 523128..525188 Listeria innocua Clip11262 1128951 NP_469845.1 CDS lin0502 NC_003212.1 525192 525794 D similar to putative sugar-phosphate isomerase; hypothetical protein 525192..525794 Listeria innocua Clip11262 1128953 NP_469846.1 CDS lin0503 NC_003212.1 525822 526289 D similar to PTS fructose-specific enzyme IIA component; hypothetical protein 525822..526289 Listeria innocua Clip11262 1128954 NP_469847.1 CDS lin0504 NC_003212.1 526306 526704 D lin0504; hypothetical protein 526306..526704 Listeria innocua Clip11262 1128955 NP_469848.1 CDS lin0505 NC_003212.1 526715 527365 D similar to ribulose-5-phosphate 3-epimerase; hypothetical protein 526715..527365 Listeria innocua Clip11262 1128956 NP_469849.1 CDS lin0506 NC_003212.1 527362 528408 D similar to polyol (sorbitol) dehydrogenase; hypothetical protein 527362..528408 Listeria innocua Clip11262 1128958 NP_469850.1 CDS lin0507 NC_003212.1 528424 528717 D similar to PTS system, Galactitol-specific IIB component; hypothetical protein 528424..528717 Listeria innocua Clip11262 1128959 NP_469851.1 CDS lin0508 NC_003212.1 528732 530003 D similar to PTS system, Galactitol-specific IIC component; hypothetical protein 528732..530003 Listeria innocua Clip11262 1128960 NP_469852.1 CDS lin0509 NC_003212.1 530143 531078 D similar to phosphoribosyl pyrophosphate synthetase; hypothetical protein 530143..531078 Listeria innocua Clip11262 1128961 NP_469853.1 CDS lin0510 NC_003212.1 531543 532130 D lin0510; hypothetical protein 531543..532130 Listeria innocua Clip11262 1128962 NP_469854.1 CDS lin0511 NC_003212.1 532209 532889 D hypothetical protein 532209..532889 Listeria innocua Clip11262 1128963 NP_469855.1 CDS lin0512 NC_003212.1 532914 533273 R lin0512; hypothetical protein complement(532914..533273) Listeria innocua Clip11262 1128964 NP_469856.1 CDS lin0513 NC_003212.1 533279 533737 R weakly similar to transcription regulator; hypothetical protein complement(533279..533737) Listeria innocua Clip11262 1128965 NP_469857.1 CDS lin0514 NC_003212.1 534129 535964 D similar to internalin protein, putative peptidoglycan bound protein (LPXTG motif); hypothetical protein 534129..535964 Listeria innocua Clip11262 1128966 NP_469858.1 CDS lin0515 NC_003212.1 536040 536471 D hypothetical protein 536040..536471 Listeria innocua Clip11262 1128967 NP_469859.1 CDS lin0516 NC_003212.1 536521 537948 R similar to Bacillus anthracis encapsulation protein CapA; hypothetical protein complement(536521..537948) Listeria innocua Clip11262 1128968 NP_469860.1 CDS lin0517 NC_003212.1 538038 538850 R similar to phosphoglycerate mutase; hypothetical protein complement(538038..538850) Listeria innocua Clip11262 1128969 NP_469861.1 CDS lin0518 NC_003212.1 539272 539640 R hypothetical protein complement(539272..539640) Listeria innocua Clip11262 1128970 NP_469862.1 CDS lin0519 NC_003212.1 539786 541201 D similar to multidrug resistance protein; hypothetical protein 539786..541201 Listeria innocua Clip11262 1128971 NP_469863.1 CDS lin0520 NC_003212.1 541333 542337 D similar to transcription regulator; hypothetical protein 541333..542337 Listeria innocua Clip11262 1128972 NP_469864.1 CDS lin0521 NC_003212.1 542615 545602 D similar to HsdR type IC restriction subunit; hypothetical protein 542615..545602 Listeria innocua Clip11262 1128973 NP_469865.1 CDS lin0522 NC_003212.1 545650 547239 D similar to HsdM type IC modification subunit; hypothetical protein 545650..547239 Listeria innocua Clip11262 1128974 NP_469866.1 CDS lin0523 NC_003212.1 547236 548429 D similar to specificity determinant HsdS; hypothetical protein 547236..548429 Listeria innocua Clip11262 1128976 NP_469867.1 CDS lin0524 NC_003212.1 548512 549441 D similar to bacteriophage integrase; hypothetical protein 548512..549441 Listeria innocua Clip11262 1128977 NP_469868.1 CDS lin0525 NC_003212.1 549487 550692 R similar to specificity determinant HsdS; hypothetical protein complement(549487..550692) Listeria innocua Clip11262 1128978 NP_469869.1 CDS lin0526 NC_003212.1 550752 552068 R similar to 6-phospho-beta-glucosidase; hypothetical protein complement(550752..552068) Listeria innocua Clip11262 1128981 NP_469870.1 CDS lin0527 NC_003212.1 552271 553023 D similar to transcription regulator; hypothetical protein 552271..553023 Listeria innocua Clip11262 1128982 NP_469871.1 CDS lin0528 NC_003212.1 553130 553573 D similar to Bacillus subtilis YybC protein; hypothetical protein 553130..553573 Listeria innocua Clip11262 1128983 NP_469872.1 CDS lin0529 NC_003212.1 553620 555281 R similar to putative sulfate transporter; hypothetical protein complement(553620..555281) Listeria innocua Clip11262 1128984 NP_469873.1 CDS lin0530 NC_003212.1 555433 556173 R similar to transcription regulator (TipA from Streptomyces coelicolor); hypothetical protein complement(555433..556173) Listeria innocua Clip11262 1128985 NP_469874.1 CDS lin0531 NC_003212.1 556411 557886 D transmembrane protein 556411..557886 Listeria innocua Clip11262 1128986 NP_469875.1 CDS lin0532 NC_003212.1 557879 559378 D hypothetical secreted protein; hypothetical protein 557879..559378 Listeria innocua Clip11262 1128988 NP_469876.1 CDS lin0533 NC_003212.1 559389 560639 D conserved hypothetical protein similar to putative glucosaminyltransferase; hypothetical protein 559389..560639 Listeria innocua Clip11262 1128989 NP_469877.1 CDS lin0534 NC_003212.1 560655 562706 D lin0534; hypothetical protein 560655..562706 Listeria innocua Clip11262 1128990 NP_469878.1 CDS lin0535 NC_003212.1 562720 563574 D lin0535; hypothetical protein 562720..563574 Listeria innocua Clip11262 1128991 NP_469879.1 CDS lin0536 NC_003212.1 563634 564464 D lin0536; hypothetical protein 563634..564464 Listeria innocua Clip11262 1128992 NP_469880.1 CDS lin0537 NC_003212.1 564542 564811 D ACT domain-containing protein; hypothetical protein 564542..564811 Listeria innocua Clip11262 1128993 NP_469881.1 CDS lin0538 NC_003212.1 564830 566185 D hypothetical protein 564830..566185 Listeria innocua Clip11262 1128994 NP_469882.1 CDS lin0539 NC_003212.1 566225 567193 R similar to transcription regulator (LacI family); hypothetical protein complement(566225..567193) Listeria innocua Clip11262 1128995 NP_469883.1 CDS lin0540 NC_003212.1 567365 568687 D similar to 6-phospho-beta-glucosidase; hypothetical protein 567365..568687 Listeria innocua Clip11262 1128996 NP_469884.1 CDS lin0541 NC_003212.1 568791 570035 D similar to N-carbamyl-L-amino acid amidohydrolase; allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 568791..570035 Listeria innocua Clip11262 1128997 NP_469885.1 CDS lin0542 NC_003212.1 570028 571209 D similar to N-acyl-L-amino acid amidohydrolase; hypothetical protein 570028..571209 Listeria innocua Clip11262 1128999 NP_469886.1 CDS lin0543 NC_003212.1 571262 572278 R similar to tagatose-1,6-diphosphate aldolase; catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources; tagatose 1,6-diphosphate aldolase complement(571262..572278) Listeria innocua Clip11262 1129000 NP_469887.1 CDS lin0544 NC_003212.1 572516 573712 D similar to penicillin-binding protein; hypothetical protein 572516..573712 Listeria innocua Clip11262 1129001 NP_469888.1 CDS lin0545 NC_003212.1 573749 574669 R similar to ABC transporter (binding protein); hypothetical protein complement(573749..574669) Listeria innocua Clip11262 1129002 NP_469889.1 CDS lin0546 NC_003212.1 574781 575131 R similar to PTS system, glucitol/sorbitol-specific enzyme IIA component; hypothetical protein complement(574781..575131) Listeria innocua Clip11262 1129003 NP_469890.1 CDS lin0547 NC_003212.1 575151 576137 R similar to PTS system, glucitol/sorbitol-specific enzyme IIBC component; hypothetical protein complement(575151..576137) Listeria innocua Clip11262 1129004 NP_469891.1 CDS lin0548 NC_003212.1 576159 576680 R similar to PTS system, glucitol/sorbitol-specific enzyme II CII component; hypothetical protein complement(576159..576680) Listeria innocua Clip11262 1129005 NP_469892.1 CDS lin0549 NC_003212.1 576705 577085 R lin0549; hypothetical protein complement(576705..577085) Listeria innocua Clip11262 1129006 NP_469893.1 CDS lin0550 NC_003212.1 577140 578390 R similar to putative NAD(P)-dependent oxidoreductase; hypothetical protein complement(577140..578390) Listeria innocua Clip11262 1129007 NP_469894.1 CDS lin0551 NC_003212.1 578649 579596 R similar to Bacillus subtilis DeoR transcriptional regulator; hypothetical protein complement(578649..579596) Listeria innocua Clip11262 1129008 NP_469895.1 CDS lin0552 NC_003212.1 579962 580627 D lin0552; hypothetical protein 579962..580627 Listeria innocua Clip11262 1129009 NP_469896.1 CDS lin0553 NC_003212.1 580648 582753 D similar to internalin protein; hypothetical protein 580648..582753 Listeria innocua Clip11262 1129010 NP_469897.1 CDS lin0554 NC_003212.1 582773 583066 D cell surface protein 582773..583066 Listeria innocua Clip11262 1129011 NP_469898.1 CDS lin0555 NC_003212.1 583113 583955 D lin0555; hypothetical protein 583113..583955 Listeria innocua Clip11262 1129012 NP_469899.1 CDS lin0556 NC_003212.1 584035 585066 D hypothetical protein 584035..585066 Listeria innocua Clip11262 1129013 NP_469900.1 CDS lin0557 NC_003212.1 585412 586059 D lin0557; hypothetical protein 585412..586059 Listeria innocua Clip11262 1129014 NP_469901.1 CDS lin0558 NC_003212.1 586088 588082 D similar to internalin protein; hypothetical protein 586088..588082 Listeria innocua Clip11262 1129015 NP_469902.1 CDS lin0559 NC_003212.1 588111 588401 D cell surface protein 588111..588401 Listeria innocua Clip11262 1129016 NP_469903.1 CDS lin0560 NC_003212.1 588453 589295 D lin0560; hypothetical protein 588453..589295 Listeria innocua Clip11262 1129017 NP_469904.1 CDS lin0561 NC_003212.1 589374 590405 D hypothetical protein 589374..590405 Listeria innocua Clip11262 1129018 NP_469905.1 CDS lin0562 NC_003212.1 590463 591098 R lin0562; hypothetical protein complement(590463..591098) Listeria innocua Clip11262 1129019 NP_469906.1 CDS lin0563 NC_003212.1 591307 592488 D similar to NADH-dependent butanol dehydrogenase; hypothetical protein 591307..592488 Listeria innocua Clip11262 1129020 NP_469907.1 CDS lin0564 NC_003212.1 592524 594002 D similar to di-tripeptide transporter; hypothetical protein 592524..594002 Listeria innocua Clip11262 1129021 NP_469908.1 CDS lin0565 NC_003212.1 594132 594839 D similar to phosphoglycerate mutase; hypothetical protein 594132..594839 Listeria innocua Clip11262 1129022 NP_469909.1 CDS lin0566 NC_003212.1 594840 595535 D similar to phosphoglycerate mutase; hypothetical protein 594840..595535 Listeria innocua Clip11262 1129024 NP_469910.1 CDS lin0567 NC_003212.1 595578 596618 R hypothetical protein complement(595578..596618) Listeria innocua Clip11262 1129025 NP_469911.1 CDS lin0568 NC_003212.1 597013 597918 D hypothetical protein 597013..597918 Listeria innocua Clip11262 1129026 NP_469912.1 CDS lin0569 NC_003212.1 597962 599338 R similar to NADP-specific glutamate dehydrogenase; converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase complement(597962..599338) Listeria innocua Clip11262 1129027 NP_469913.1 CDS hisE NC_003212.1 599873 600184 R similar to phosphorybosil-AMP-cyclohydrolase (HisI2 protein); catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase complement(599873..600184) Listeria innocua Clip11262 1129028 NP_469914.1 CDS hisI NC_003212.1 600185 600502 R similar to phosphoribosyl-AMP cyclohydrolase (HisI1 protein); PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase complement(600185..600502) Listeria innocua Clip11262 1129029 NP_469915.1 CDS lin0572 NC_003212.1 600499 601254 R highly similar to cyclase HisF; catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(600499..601254) Listeria innocua Clip11262 1129031 NP_469916.1 CDS lin0573 NC_003212.1 601244 601966 R highly similar to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(601244..601966) Listeria innocua Clip11262 1129033 NP_469917.1 CDS hisH NC_003212.1 601945 602571 R similar to amidotransferases; with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(601945..602571) Listeria innocua Clip11262 1129035 NP_469918.1 CDS hisB NC_003212.1 602572 603156 R catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase complement(602572..603156) Listeria innocua Clip11262 1129036 NP_469919.1 CDS hisD NC_003212.1 603157 604440 R highly similar to histidinol dehydrogenases; catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(603157..604440) Listeria innocua Clip11262 1129037 NP_469920.1 CDS hisG NC_003212.1 604437 605078 R similar to ATP phosphoribosyltransferase; short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit complement(604437..605078) Listeria innocua Clip11262 1129039 NP_469921.1 CDS hisZ NC_003212.1 605078 606256 R May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit complement(605078..606256) Listeria innocua Clip11262 1129041 NP_469922.1 CDS lin0579 NC_003212.1 606408 607235 D similar histidinol phosphate phosphatase; catalyzes the formation of L-histidinol from L-histidinol phosphate; histidinol-phosphatase 606408..607235 Listeria innocua Clip11262 1129042 NP_469923.1 CDS lin0580 NC_003212.1 607220 607516 R similar to methyltransferase; hypothetical protein complement(607220..607516) Listeria innocua Clip11262 1129043 NP_469924.1 CDS lin0581 NC_003212.1 607593 608624 D lin0581; hypothetical protein 607593..608624 Listeria innocua Clip11262 1129044 NP_469925.1 CDS lin0582 NC_003212.1 608666 609961 R hypothetical protein complement(608666..609961) Listeria innocua Clip11262 1129045 NP_469926.1 CDS lin0583 NC_003212.1 610277 611671 D similar to beta-glucosidase; hypothetical protein 610277..611671 Listeria innocua Clip11262 1129046 NP_469927.1 CDS lin0584 NC_003212.1 611715 612443 D similar to transcription regulator GntR family; hypothetical protein 611715..612443 Listeria innocua Clip11262 1129047 NP_469928.1 CDS lin0585 NC_003212.1 612868 614331 D hypothetical cell wall associated protein; hypothetical protein 612868..614331 Listeria innocua Clip11262 1129048 NP_469929.1 CDS lin0586 NC_003212.1 614385 614843 R lin0586; hypothetical protein complement(614385..614843) Listeria innocua Clip11262 1129049 NP_469930.1 CDS lin0587 NC_003212.1 614857 615609 R hypothetical protein complement(614857..615609) Listeria innocua Clip11262 1129050 NP_469931.1 CDS lin0588 NC_003212.1 615774 615983 D hypothetical protein 615774..615983 Listeria innocua Clip11262 1129051 NP_469932.1 CDS lin0589 NC_003212.1 616006 616665 D weakly similar to carboxylesterase; hypothetical protein 616006..616665 Listeria innocua Clip11262 1129052 NP_469933.1 CDS lin0590 NC_003212.1 616702 617889 R hypothetical protein complement(616702..617889) Listeria innocua Clip11262 1129053 NP_469934.1 CDS iap NC_003212.1 617978 619375 R iap; p60; autolytic enzyme; can cleave bacterial peptidoglycan; secreted by SecA2 system; invasion associated secreted endopeptidase complement(617978..619375) Listeria innocua Clip11262 1129054 NP_469935.1 CDS lin0592 NC_003212.1 619800 622130 D similar to preprotein translocase SecA subunit; functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, especially gram positive pathogens, have paralogs that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 619800..622130 Listeria innocua Clip11262 1129055 NP_469936.1 CDS lin0593 NC_003212.1 622246 623415 D hypothetical protein 622246..623415 Listeria innocua Clip11262 1129056 NP_469937.1 CDS lin0594 NC_003212.1 623676 624389 D putative secreted protein 623676..624389 Listeria innocua Clip11262 1129057 NP_469938.1 CDS lin0595 NC_003212.1 624459 625484 D lin0595; hypothetical protein 624459..625484 Listeria innocua Clip11262 1129058 NP_469939.1 CDS lin0596 NC_003212.1 625502 627967 D putative secreted protein 625502..627967 Listeria innocua Clip11262 1129059 NP_469940.1 CDS lin0597 NC_003212.1 628080 629483 D similar to DNA photolyase; hypothetical protein 628080..629483 Listeria innocua Clip11262 1129060 NP_469941.1 CDS lin0598 NC_003212.1 629621 630037 D lin0598; hypothetical protein 629621..630037 Listeria innocua Clip11262 1129061 NP_469942.1 CDS lin0599 NC_003212.1 630034 631803 D similar to a fusion of two types of conserved hypothetical proteinconserved hypothetical; hypothetical protein 630034..631803 Listeria innocua Clip11262 1129063 NP_469943.1 CDS lin0600 NC_003212.1 631800 632573 D similar to unknown membrane proteins; hypothetical protein 631800..632573 Listeria innocua Clip11262 1129065 NP_469944.1 CDS lin0601 NC_003212.1 632699 633241 D lin0601; hypothetical protein 632699..633241 Listeria innocua Clip11262 1129066 NP_469945.1 CDS lin0602 NC_003212.1 633465 634265 D similar to transport proteins (formate?); hypothetical protein 633465..634265 Listeria innocua Clip11262 1129067 NP_469946.1 CDS metX NC_003212.1 634305 635411 R similar to homoserine O-acetyltransferase; Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase complement(634305..635411) Listeria innocua Clip11262 1129068 NP_469947.1 CDS lin0604 NC_003212.1 635428 636705 R similar to O-acetylhomoserine sulfhydrylase; hypothetical protein complement(635428..636705) Listeria innocua Clip11262 1129069 NP_469948.1 CDS lin0605 NC_003212.1 637153 637680 D hypothetical protein 637153..637680 Listeria innocua Clip11262 1129070 NP_469949.1 CDS lin0606 NC_003212.1 637733 638434 R similar to transcription regulator CRP/FNR family; hypothetical protein complement(637733..638434) Listeria innocua Clip11262 1129071 NP_469950.1 CDS lin0607 NC_003212.1 638510 639058 R similar to proteins involved in biotin metabolism (BioY); hypothetical protein complement(638510..639058) Listeria innocua Clip11262 1129072 NP_469951.1 CDS lin0608 NC_003212.1 639252 639584 D hypothetical protein 639252..639584 Listeria innocua Clip11262 1129073 NP_469952.1 CDS lin0609 NC_003212.1 639577 640167 D lin0609; hypothetical protein 639577..640167 Listeria innocua Clip11262 1129075 NP_469953.1 CDS lin0610 NC_003212.1 640160 641260 D similar to cell surface protein; hypothetical protein 640160..641260 Listeria innocua Clip11262 1129077 NP_469954.1 CDS lin0611 NC_003212.1 641366 641866 D weakly similar to transcription regulator; hypothetical protein 641366..641866 Listeria innocua Clip11262 1129078 NP_469955.1 CDS lin0612 NC_003212.1 641913 642299 R lin0612; hypothetical protein complement(641913..642299) Listeria innocua Clip11262 1129079 NP_469956.1 CDS lin0613 NC_003212.1 642352 642696 R similar to Bacillus subtilis YvlA protein; hypothetical protein complement(642352..642696) Listeria innocua Clip11262 1129080 NP_469957.1 CDS lin0614 NC_003212.1 642847 644187 R hypothetical protein complement(642847..644187) Listeria innocua Clip11262 1129081 NP_469958.1 CDS lin0615 NC_003212.1 644354 644815 D similar to transcription regulator MarR family; hypothetical protein 644354..644815 Listeria innocua Clip11262 1129082 NP_469959.1 CDS lin0616 NC_003212.1 644835 646547 D similar to ABC transporter, ATP-binding protein; hypothetical protein 644835..646547 Listeria innocua Clip11262 1129083 NP_469960.1 CDS lin0617 NC_003212.1 646544 648361 D similar to ABC transporter, ATP-binding protein; hypothetical protein 646544..648361 Listeria innocua Clip11262 1129085 NP_469961.1 CDS lin0618 NC_003212.1 648475 648774 D similar to Escherichia coli phage shock protein E; hypothetical protein 648475..648774 Listeria innocua Clip11262 1129086 NP_469962.1 CDS lin0619 NC_003212.1 648814 650577 R similar to internalin proteins, putative peptidoglycan bound protein (LPXTG motif); hypothetical protein complement(648814..650577) Listeria innocua Clip11262 1129087 NP_469963.1 CDS acpD NC_003212.1 650742 651368 R similar to acyl-carrier protein phosphodiesterase and NAD(P)H dehydrogenase; FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase complement(650742..651368) Listeria innocua Clip11262 1129088 NP_469964.1 CDS lin0621 NC_003212.1 651549 651992 D similar to transcription regulator MarR family; hypothetical protein 651549..651992 Listeria innocua Clip11262 1129089 NP_469965.1 CDS lin0622 NC_003212.1 651989 652930 D similar to oxidoreductase; hypothetical protein 651989..652930 Listeria innocua Clip11262 1129091 NP_469966.1 CDS lin0623 NC_003212.1 653025 653558 D hypothetical protein 653025..653558 Listeria innocua Clip11262 1129092 NP_469967.1 CDS lin0624 NC_003212.1 653555 653797 R lin0624; hypothetical protein complement(653555..653797) Listeria innocua Clip11262 1129093 NP_469968.1 CDS lin0625 NC_003212.1 653905 655656 D glycerophosphoryl diester phosphodiesterase 653905..655656 Listeria innocua Clip11262 1129094 NP_469969.1 CDS lin0626 NC_003212.1 655698 656168 R lin0626; hypothetical protein complement(655698..656168) Listeria innocua Clip11262 1129096 NP_469970.1 CDS lin0627 NC_003212.1 656278 657429 R similar to protein kinase; hypothetical protein complement(656278..657429) Listeria innocua Clip11262 1129097 NP_469971.1 CDS lin0628 NC_003212.1 657535 657990 D lin0628; hypothetical protein 657535..657990 Listeria innocua Clip11262 1129098 NP_469972.1 CDS lin0629 NC_003212.1 658046 658438 D lin0629; hypothetical protein 658046..658438 Listeria innocua Clip11262 1129099 NP_469973.1 CDS lin0630 NC_003212.1 658534 659274 D hypothetical protein 658534..659274 Listeria innocua Clip11262 1129100 NP_469974.1 CDS lin0631 NC_003212.1 659358 659636 D hypothetical protein 659358..659636 Listeria innocua Clip11262 1129101 NP_469975.1 CDS lin0632 NC_003212.1 659652 659918 D lin0632; hypothetical protein 659652..659918 Listeria innocua Clip11262 1129102 NP_469976.1 CDS lin0633 NC_003212.1 659950 660381 R hypothetical protein complement(659950..660381) Listeria innocua Clip11262 1129103 NP_469977.1 CDS lin0634 NC_003212.1 660418 661119 R lin0634; hypothetical protein complement(660418..661119) Listeria innocua Clip11262 1129104 NP_469978.1 CDS lin0635 NC_003212.1 661202 662881 R hypothetical protein complement(661202..662881) Listeria innocua Clip11262 1129105 NP_469979.1 CDS lin0636 NC_003212.1 663184 667920 D pepdidoglycan bound protein 663184..667920 Listeria innocua Clip11262 1129106 NP_469980.1 CDS lin0637 NC_003212.1 668016 668291 D lin0637; hypothetical protein 668016..668291 Listeria innocua Clip11262 1129107 NP_469981.1 CDS lin0638 NC_003212.1 668334 668861 D lin0638; hypothetical protein 668334..668861 Listeria innocua Clip11262 1129108 NP_469982.1 CDS lin0639 NC_003212.1 668948 669652 D lin0639; hypothetical protein 668948..669652 Listeria innocua Clip11262 1129109 NP_469983.1 CDS lin0640 NC_003212.1 669764 670180 D hypothetical protein 669764..670180 Listeria innocua Clip11262 1129110 NP_469984.1 CDS lin0641 NC_003212.1 670194 670793 D weakly similar to methyltransferase; hypothetical protein 670194..670793 Listeria innocua Clip11262 1129111 NP_469985.1 CDS lin0642 NC_003212.1 671031 671564 D similar to a transcription regulator (surface protein PAg negative regulator par); hypothetical protein 671031..671564 Listeria innocua Clip11262 1129112 NP_469986.1 CDS lin0643 NC_003212.1 671629 672546 D similar to oxidoreductase; hypothetical protein 671629..672546 Listeria innocua Clip11262 1129113 NP_469987.1 CDS lin0644 NC_003212.1 672812 674689 D similar to heavy metal-transporting ATPase; hypothetical protein 672812..674689 Listeria innocua Clip11262 1129114 NP_469988.1 CDS lin0645 NC_003212.1 674788 675516 D lin0645; hypothetical protein 674788..675516 Listeria innocua Clip11262 1129115 NP_469989.1 CDS lin0646 NC_003212.1 675660 676310 D similar to putative transaldolase; hypothetical protein 675660..676310 Listeria innocua Clip11262 1129116 NP_469990.1 CDS lin0647 NC_003212.1 676350 678170 R hypothetical protein complement(676350..678170) Listeria innocua Clip11262 1129117 NP_469991.1 CDS lin0648 NC_003212.1 678404 679795 D similar to amino acid transporter; hypothetical protein 678404..679795 Listeria innocua Clip11262 1129118 NP_469992.1 CDS lin0649 NC_003212.1 679885 680724 D hypothetical protein 679885..680724 Listeria innocua Clip11262 1129120 NP_469993.1 CDS lin0650 NC_003212.1 680807 681091 R lin0650; hypothetical protein complement(680807..681091) Listeria innocua Clip11262 1129121 NP_469994.1 CDS lin0651 NC_003212.1 681188 682138 D similar to membrane proteins; hypothetical protein 681188..682138 Listeria innocua Clip11262 1129122 NP_469995.1 CDS lin0652 NC_003212.1 682162 682803 D similar to transcription regulators; hypothetical protein 682162..682803 Listeria innocua Clip11262 1129123 NP_469996.1 CDS lin0653 NC_003212.1 682845 685535 D hypothetical protein 682845..685535 Listeria innocua Clip11262 1129124 NP_469997.1 CDS lin0654 NC_003212.1 685582 686229 D similar to transcription regulator; hypothetical protein 685582..686229 Listeria innocua Clip11262 1129125 NP_469998.1 CDS lin0655 NC_003212.1 686238 686774 R hypothetical protein complement(686238..686774) Listeria innocua Clip11262 1129126 NP_469999.1 CDS lin0656 NC_003212.1 686761 687798 R lin0656; hypothetical protein complement(686761..687798) Listeria innocua Clip11262 1129127 NP_470000.1 CDS lin0657 NC_003212.1 687989 688198 D lin0657; hypothetical protein 687989..688198 Listeria innocua Clip11262 1129128 NP_470001.1 CDS lin0658 NC_003212.1 688272 688979 D similar to phosphoprotein phosphatases; hypothetical protein 688272..688979 Listeria innocua Clip11262 1129129 NP_470002.1 CDS lin0659 NC_003212.1 689025 689588 R hypothetical protein complement(689025..689588) Listeria innocua Clip11262 1129130 NP_470003.1 CDS lin0660 NC_003212.1 689709 690125 D lin0660; hypothetical protein 689709..690125 Listeria innocua Clip11262 1129132 NP_470004.1 CDS lin0661 NC_003212.1 690411 692201 D internalin-like protein 690411..692201 Listeria innocua Clip11262 1129133 NP_470005.1 CDS lin0662 NC_003212.1 692346 692975 D hypothetical protein 692346..692975 Listeria innocua Clip11262 1129134 NP_470006.1 CDS lin0663 NC_003212.1 692972 693868 R similar to transcription regulator (Rgg type); hypothetical protein complement(692972..693868) Listeria innocua Clip11262 1129135 NP_470007.1 CDS lin0664 NC_003212.1 694103 694384 D similar to transposases; hypothetical protein 694103..694384 Listeria innocua Clip11262 1129137 NP_470008.1 CDS lin0665 NC_003212.1 694660 697155 D highly similar to ORFA of Listeria seeligeri, (LPXTG motif); hypothetical protein 694660..697155 Listeria innocua Clip11262 1129138 NP_470009.1 CDS lin0666 NC_003212.1 697208 697516 R hypothetical protein complement(697208..697516) Listeria innocua Clip11262 1129139 NP_470010.1 CDS lin0667 NC_003212.1 697579 698394 R highly similar to phosphomethylpyrimidine kinase thiD; hypothetical protein complement(697579..698394) Listeria innocua Clip11262 1129140 NP_470011.1 CDS lin0668 NC_003212.1 698420 699286 R hypothetical protein complement(698420..699286) Listeria innocua Clip11262 1129141 NP_470012.1 CDS lin0669 NC_003212.1 699460 700023 D similar to acetyl transferase; hypothetical protein 699460..700023 Listeria innocua Clip11262 1129142 NP_470013.1 CDS lin0670 NC_003212.1 700020 700283 D lin0670; hypothetical protein 700020..700283 Listeria innocua Clip11262 1129144 NP_470014.1 CDS lin0671 NC_003212.1 700293 700670 D hypothetical protein 700293..700670 Listeria innocua Clip11262 1129145 NP_470015.1 CDS lin0672 NC_003212.1 700784 701719 D similar to ABC transporter (ATP-binding protein); hypothetical protein 700784..701719 Listeria innocua Clip11262 1129146 NP_470016.1 CDS lin0673 NC_003212.1 701712 702482 D similar to putative ABC transporter, permease protein; hypothetical protein 701712..702482 Listeria innocua Clip11262 1129148 NP_470017.1 CDS lin0674 NC_003212.1 702741 703625 D similar to oxidoreductase; hypothetical protein 702741..703625 Listeria innocua Clip11262 1129149 NP_470018.1 CDS lin0675 NC_003212.1 703643 703819 D lin0675; hypothetical protein 703643..703819 Listeria innocua Clip11262 1129150 NP_470019.1 CDS lin0676 NC_003212.1 703943 704551 D lin0676; hypothetical protein 703943..704551 Listeria innocua Clip11262 1129151 NP_470020.1 CDS lin0677 NC_003212.1 705344 706225 D hypothetical protein 705344..706225 Listeria innocua Clip11262 1129152 NP_470021.1 CDS lin0678 NC_003212.1 706261 706689 D lin0678; hypothetical protein 706261..706689 Listeria innocua Clip11262 1129153 NP_470022.1 CDS lin0679 NC_003212.1 707870 708280 D hypothetical protein 707870..708280 Listeria innocua Clip11262 1129154 NP_470023.1 CDS lin0680 NC_003212.1 708424 708846 D hypothetical protein 708424..708846 Listeria innocua Clip11262 1129155 NP_470024.1 CDS lin0681 NC_003212.1 708887 709096 R lin0681; hypothetical protein complement(708887..709096) Listeria innocua Clip11262 1129156 NP_470025.1 CDS lin0682 NC_003212.1 709117 710037 R lin0682; hypothetical protein complement(709117..710037) Listeria innocua Clip11262 1129157 NP_470026.1 CDS lin0683 NC_003212.1 710409 710723 D lin0683; hypothetical protein 710409..710723 Listeria innocua Clip11262 1129158 NP_470027.1 CDS fliP NC_003212.1 710716 711483 D similar to flagellar biosynthesic protein FliP; FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 710716..711483 Listeria innocua Clip11262 1129160 NP_470028.1 CDS fliQ NC_003212.1 711496 711768 D similar to flagellar biosynthesis protein FliQ; with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 711496..711768 Listeria innocua Clip11262 1129161 NP_470029.1 CDS fliR NC_003212.1 711771 712532 D similar to flagellar biosynthetic protein FliR; FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 711771..712532 Listeria innocua Clip11262 1129163 NP_470030.1 CDS flhB NC_003212.1 712548 713594 D similar to flagellar biosynthetic protein flhB; membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 712548..713594 Listeria innocua Clip11262 1129164 NP_470031.1 CDS flhA NC_003212.1 713641 715716 D similar to flagella-associated protein flhA; membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 713641..715716 Listeria innocua Clip11262 1129165 NP_470032.1 CDS lin0689 NC_003212.1 715738 716961 D similar to flagellar biosynthesis protein FlhF; Positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 715738..716961 Listeria innocua Clip11262 1129166 NP_470033.1 CDS flgG NC_003212.1 716958 717737 D similar to flagellar hook-basal body protein FlgG; makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 716958..717737 Listeria innocua Clip11262 1129168 NP_470034.1 CDS lin0691 NC_003212.1 717766 718554 D similar to chemotactic methyltransferase CheR; hypothetical protein 717766..718554 Listeria innocua Clip11262 1129169 NP_470035.1 CDS lin0692 NC_003212.1 718579 718914 D lin0692; hypothetical protein 718579..718914 Listeria innocua Clip11262 1129170 NP_470036.1 CDS lin0693 NC_003212.1 718941 719792 D similar to motility protein (flagellar motor rotation) MotA; With Mot B forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 718941..719792 Listeria innocua Clip11262 1129171 NP_470037.1 CDS lin0694 NC_003212.1 719752 720579 D similar to motility protein (flagellar motor rotation) MotB; hypothetical protein 719752..720579 Listeria innocua Clip11262 1129173 NP_470038.1 CDS lin0695 NC_003212.1 720589 721089 D lin0695; hypothetical protein 720589..721089 Listeria innocua Clip11262 1129174 NP_470039.1 CDS lin0696 NC_003212.1 721112 723025 D hypothetical protein 721112..723025 Listeria innocua Clip11262 1129175 NP_470040.1 CDS lin0697 NC_003212.1 723038 723946 D similar to CheA activity-modulating chemotaxis protein CheV; hypothetical protein 723038..723946 Listeria innocua Clip11262 1129176 NP_470041.1 CDS flaA NC_003212.1 724183 725046 D structural flagella protein; flagellin 724183..725046 Listeria innocua Clip11262 1129177 NP_470042.1 CDS cheY NC_003212.1 725321 725680 D chemotaxis response regulator CheY 725321..725680 Listeria innocua Clip11262 1129178 NP_470043.1 CDS cheA NC_003212.1 725700 727556 D two-component sensor histidine kinase CheA 725700..727556 Listeria innocua Clip11262 1129179 NP_470044.1 CDS lin0701 NC_003212.1 727569 727868 D similar to flagellar motor switch protein fliY C-terminal part; flagellar motor switch protein 727569..727868 Listeria innocua Clip11262 1129180 NP_470045.1 CDS lin0702 NC_003212.1 727887 728297 D lin0702; hypothetical protein 727887..728297 Listeria innocua Clip11262 1129181 NP_470046.1 CDS lin0703 NC_003212.1 728313 729359 D lin0703; hypothetical protein 728313..729359 Listeria innocua Clip11262 1129182 NP_470047.1 CDS flgD NC_003212.1 729361 729783 D similar to flagellar hook assembly protein; acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; flagellar basal body rod modification protein 729361..729783 Listeria innocua Clip11262 1129184 NP_470048.1 CDS flgE NC_003212.1 729803 731038 D similar to flagellar hook protein FlgE; the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 729803..731038 Listeria innocua Clip11262 1129185 NP_470049.1 CDS lin0706 NC_003212.1 731052 731288 D weakly similar to flagellar switch protein; One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 731052..731288 Listeria innocua Clip11262 1129186 NP_470050.1 CDS fliM NC_003212.1 731309 732301 D similar to flagellar switch protein FliM; with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 731309..732301 Listeria innocua Clip11262 1129187 NP_470051.1 CDS lin0708 NC_003212.1 732304 733845 D similar to flagellar motor switch protein fliY; One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 732304..733845 Listeria innocua Clip11262 1129189 NP_470052.1 CDS lin0709 NC_003212.1 733851 735254 D lin0709; hypothetical protein 733851..735254 Listeria innocua Clip11262 1129190 NP_470053.1 CDS lin0710 NC_003212.1 735277 736443 D lin0710; hypothetical protein 735277..736443 Listeria innocua Clip11262 1129191 NP_470054.1 CDS lin0711 NC_003212.1 736550 737014 D lin0711; hypothetical protein 736550..737014 Listeria innocua Clip11262 1129192 NP_470055.1 CDS lin0712 NC_003212.1 737024 737452 D lin0712; hypothetical protein 737024..737452 Listeria innocua Clip11262 1129193 NP_470056.1 CDS flgK NC_003212.1 737472 738992 D similar to flagellar hook-associated protein FlgK; with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 737472..738992 Listeria innocua Clip11262 1129194 NP_470057.1 CDS flgL NC_003212.1 739004 739879 D similar to flagellar hook-associated protein 3 FlgL; with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL 739004..739879 Listeria innocua Clip11262 1129195 NP_470058.1 CDS fliD NC_003212.1 739891 741180 D similar to flagellar hook-associated protein 2 FliD; involved in flagellin assembly; flagellar capping protein 739891..741180 Listeria innocua Clip11262 1129196 NP_470059.1 CDS lin0716 NC_003212.1 741199 741585 D similar to hypothetical flagellar protein; hypothetical protein 741199..741585 Listeria innocua Clip11262 1129197 NP_470060.1 CDS lin0717 NC_003212.1 741557 741838 D lin0717; hypothetical protein 741557..741838 Listeria innocua Clip11262 1129199 NP_470061.1 CDS flgB NC_003212.1 741859 742260 D similar to flagellar basal-body rod protein flgB; with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB 741859..742260 Listeria innocua Clip11262 1129200 NP_470062.1 CDS flgC NC_003212.1 742272 742682 D similar to flagellar basal-body rod protein flgC; with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 742272..742682 Listeria innocua Clip11262 1129201 NP_470063.1 CDS fliE NC_003212.1 742699 742995 D similar to flagellar hook-basal body complex protein FliE; forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 742699..742995 Listeria innocua Clip11262 1129202 NP_470064.1 CDS fliF NC_003212.1 743063 744715 D similar to flagellar basal-body M-ring protein fliF; the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 743063..744715 Listeria innocua Clip11262 1129203 NP_470065.1 CDS fliG NC_003212.1 744719 745825 D similar to flagellar motor switch protein fliG; One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 744719..745825 Listeria innocua Clip11262 1129204 NP_470066.1 CDS fliH NC_003212.1 745812 746504 D lin0723; binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 745812..746504 Listeria innocua Clip11262 1129205 NP_470067.1 CDS fliI NC_003212.1 746501 747802 D similar to H+-transporting ATP synthase alpha chain FliI, flagellar-specific, -; involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 746501..747802 Listeria innocua Clip11262 1129207 NP_470068.1 CDS lin0725 NC_003212.1 747819 748490 D similar to transglycosylase; hypothetical protein 747819..748490 Listeria innocua Clip11262 1129208 NP_470069.1 CDS lin0726 NC_003212.1 748504 749148 D lin0726; hypothetical protein 748504..749148 Listeria innocua Clip11262 1129209 NP_470070.1 CDS lin0727 NC_003212.1 749269 749601 D hypothetical protein 749269..749601 Listeria innocua Clip11262 1129210 NP_470071.1 CDS lin0728 NC_003212.1 749594 749917 D lin0728; hypothetical protein 749594..749917 Listeria innocua Clip11262 1129212 NP_470072.1 CDS lin0729 NC_003212.1 749962 750609 R putative fibronectin-binding protein complement(749962..750609) Listeria innocua Clip11262 1129213 NP_470073.1 CDS lin0730 NC_003212.1 750881 752611 D similar to pyruvate oxidase; catalyzes the formation of acetyl phosphate from pyruvate; pyruvate oxidase 750881..752611 Listeria innocua Clip11262 1129214 NP_470074.1 CDS lin0731 NC_003212.1 752773 754572 D similar to metyl-accepting chemotaxis protein; hypothetical protein 752773..754572 Listeria innocua Clip11262 1129215 NP_470075.1 CDS lin0732 NC_003212.1 754586 755314 D similar to Bacillus subtilis YvpB protein; hypothetical protein 754586..755314 Listeria innocua Clip11262 1129216 NP_470076.1 CDS lin0733 NC_003212.1 755355 755567 R peptidoglycan binding protein complement(755355..755567) Listeria innocua Clip11262 1129217 NP_470077.1 CDS lin0734 NC_003212.1 756015 757820 D similar to L-glutamine-D-fructose-6-phosphate amidotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 756015..757820 Listeria innocua Clip11262 1129218 NP_470078.1 CDS lin0735 NC_003212.1 757933 758670 D similar to riboflavin kinase / FAD synthase; hypothetical protein 757933..758670 Listeria innocua Clip11262 1129219 NP_470079.1 CDS lin0736 NC_003212.1 758756 759235 D lin0736; hypothetical protein 758756..759235 Listeria innocua Clip11262 1129220 NP_470080.1 CDS lin0737 NC_003212.1 759249 759587 D lin0737; hypothetical protein 759249..759587 Listeria innocua Clip11262 1129221 NP_470081.1 CDS lin0738 NC_003212.1 759735 760130 D lin0738; hypothetical protein 759735..760130 Listeria innocua Clip11262 1129222 NP_470082.1 CDS lin0739 NC_003212.1 760366 761931 D internalin like protein (LPXTG) 760366..761931 Listeria innocua Clip11262 1129223 NP_470083.1 CDS lin0740 NC_003212.1 761993 763966 R cell surface protein complement(761993..763966) Listeria innocua Clip11262 1129224 NP_470084.1 CDS lin0741 NC_003212.1 764492 766381 D peptidoglycan binding protein 764492..766381 Listeria innocua Clip11262 1129225 NP_470085.1 CDS lin0742 NC_003212.1 766378 767037 R similar to putative transcription regulator; hypothetical protein complement(766378..767037) Listeria innocua Clip11262 1129226 NP_470086.1 CDS lin0743 NC_003212.1 767299 767676 D similar to transcriptional regulator (GntR family); hypothetical protein 767299..767676 Listeria innocua Clip11262 1129228 NP_470087.1 CDS lin0744 NC_003212.1 767660 768349 D similar to ABC transporter, ATP-binding protein; hypothetical protein 767660..768349 Listeria innocua Clip11262 1129230 NP_470088.1 CDS lin0745 NC_003212.1 768346 769050 D lin0745; hypothetical protein 768346..769050 Listeria innocua Clip11262 1129232 NP_470089.1 CDS lin0746 NC_003212.1 769065 769397 D similar to ABC transporter, ATP-binding protein (truncated, N-terminal part); hypothetical protein 769065..769397 Listeria innocua Clip11262 1129233 NP_470090.1 CDS lin0748 NC_003212.1 771094 771597 D lin0748; hypothetical protein 771094..771597 Listeria innocua Clip11262 1129235 NP_470091.1 CDS lin0749 NC_003212.1 771740 772561 D hypothetical protein 771740..772561 Listeria innocua Clip11262 1129236 NP_470092.1 CDS lin0750 NC_003212.1 772533 773438 D Similar to ABC transporter (ATP-binding protein); hypothetical protein 772533..773438 Listeria innocua Clip11262 1129238 NP_470093.1 CDS lin0751 NC_003212.1 773431 774411 D hypothetical protein 773431..774411 Listeria innocua Clip11262 1129239 NP_470094.1 CDS lin0752 NC_003212.1 774538 775428 D lin0752; hypothetical protein 774538..775428 Listeria innocua Clip11262 1129240 NP_470095.1 CDS lin0753 NC_003212.1 775425 776384 D lin0753; hypothetical protein 775425..776384 Listeria innocua Clip11262 1129242 NP_470096.1 CDS lin0754 NC_003212.1 776392 777000 D lin0754; hypothetical protein 776392..777000 Listeria innocua Clip11262 1129244 NP_470097.1 CDS lin0755 NC_003212.1 777010 777630 D hypothetical protein 777010..777630 Listeria innocua Clip11262 1129245 NP_470098.1 CDS lin0756 NC_003212.1 777957 779213 D similar to ATP/GTP-binding protein; hypothetical protein 777957..779213 Listeria innocua Clip11262 1129247 NP_470099.1 CDS lin0757 NC_003212.1 779279 780160 D hypothetical protein 779279..780160 Listeria innocua Clip11262 1129248 NP_470100.1 CDS lin0758 NC_003212.1 780157 781146 D similar to lipoate-protein ligase; hypothetical protein 780157..781146 Listeria innocua Clip11262 1129249 NP_470101.1 CDS lin0759 NC_003212.1 781299 782597 D lin0759; hypothetical protein 781299..782597 Listeria innocua Clip11262 1129250 NP_470102.1 CDS lin0760 NC_003212.1 782614 783504 D similar to putative sugar ABC transporter, permease protein; hypothetical protein 782614..783504 Listeria innocua Clip11262 1129251 NP_470103.1 CDS lin0761 NC_003212.1 783516 784391 D similar to ABC transporter, permease protein; hypothetical protein 783516..784391 Listeria innocua Clip11262 1129252 NP_470104.1 CDS lin0762 NC_003212.1 784412 785665 D similar to sugar ABC transporter, periplasmic sugar-binding protein; hypothetical protein 784412..785665 Listeria innocua Clip11262 1129253 NP_470105.1 CDS lin0763 NC_003212.1 785669 786694 D similar to alpha-1,6-mannanase; hypothetical protein 785669..786694 Listeria innocua Clip11262 1129255 NP_470106.1 CDS lin0764 NC_003212.1 786710 787828 R similar to transcriptional regulator (LacI family); hypothetical protein complement(786710..787828) Listeria innocua Clip11262 1129256 NP_470107.1 CDS lin0765 NC_003212.1 787989 788741 D lin0765; hypothetical protein 787989..788741 Listeria innocua Clip11262 1129257 NP_470108.1 CDS lin0766 NC_003212.1 788776 789426 D similar to transcription regulator; hypothetical protein 788776..789426 Listeria innocua Clip11262 1129258 NP_470109.1 CDS lin0767 NC_003212.1 789465 790454 R similar to alcohol dehydrogenase; hypothetical protein complement(789465..790454) Listeria innocua Clip11262 1129259 NP_470110.1 CDS lin0768 NC_003212.1 790632 791561 D hypothetical protein 790632..791561 Listeria innocua Clip11262 1129260 NP_470111.1 CDS lin0769 NC_003212.1 791613 791945 D lin0769; hypothetical protein 791613..791945 Listeria innocua Clip11262 1129261 NP_470112.1 CDS lin0770 NC_003212.1 791983 792849 R similar to transcription regulator (repressor); hypothetical protein complement(791983..792849) Listeria innocua Clip11262 1129262 NP_470113.1 CDS lin0771 NC_003212.1 793007 793390 D lin0771; hypothetical protein 793007..793390 Listeria innocua Clip11262 1129263 NP_470114.1 CDS lin0772 NC_003212.1 793559 794812 R lin0772; hypothetical protein complement(793559..794812) Listeria innocua Clip11262 1129264 NP_470115.1 CDS lin0773 NC_003212.1 795075 795542 R lin0773; hypothetical protein complement(795075..795542) Listeria innocua Clip11262 1129265 NP_470116.1 CDS lin0774 NC_003212.1 795659 796537 R similar to mannose-specific phosphotransferase system (PTS) component IID; hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; PTS system mannose-specific transporter subunit IID complement(795659..796537) Listeria innocua Clip11262 1129266 NP_470117.1 CDS lin0775 NC_003212.1 796556 797371 R similar to mannose-specific phosphotransferase system (PTS) component IIC; hypothetical protein complement(796556..797371) Listeria innocua Clip11262 1129267 NP_470118.1 CDS lin0776 NC_003212.1 797533 798018 R similar to mannose-specific phosphotransferase system (PTS) component IIB; hypothetical protein complement(797533..798018) Listeria innocua Clip11262 1129268 NP_470119.1 CDS lin0777 NC_003212.1 798018 798452 R similar to mannose-specific phosphotransferase system (PTS) component IIA; hypothetical protein complement(798018..798452) Listeria innocua Clip11262 1129269 NP_470120.1 CDS lin0778 NC_003212.1 798741 801557 R similar to transcriptional regulator (NifA/NtrC family); hypothetical protein complement(798741..801557) Listeria innocua Clip11262 1129271 NP_470121.1 CDS lin0779 NC_003212.1 801753 802388 D similar to acyl-carrier protein phosphodiesterase and to NAD(P)H dehydrogenase; hypothetical protein 801753..802388 Listeria innocua Clip11262 1129272 NP_470122.1 CDS lin0780 NC_003212.1 802582 803958 D similar to amino acid transporter; hypothetical protein 802582..803958 Listeria innocua Clip11262 1129273 NP_470123.1 CDS lin0781 NC_003212.1 804223 808650 D lin0781; hypothetical protein 804223..808650 Listeria innocua Clip11262 1129274 NP_470124.1 CDS lin0782 NC_003212.1 808685 809533 R hypothetical protein complement(808685..809533) Listeria innocua Clip11262 1129275 NP_470125.1 CDS lin0783 NC_003212.1 809559 810035 R similar to transcription regulator (EbsC from Enterococcus faecalis); hypothetical protein complement(809559..810035) Listeria innocua Clip11262 1129276 NP_470126.1 CDS lin0784 NC_003212.1 810159 810815 D lin0784; hypothetical protein 810159..810815 Listeria innocua Clip11262 1129277 NP_470127.1 CDS lin0785 NC_003212.1 810915 811805 D similar to conserved hypothetical protein; hypothetical protein 810915..811805 Listeria innocua Clip11262 1129278 NP_470128.1 CDS lin0786 NC_003212.1 811840 812541 R similar to conserved hypothetical protein; hypothetical protein complement(811840..812541) Listeria innocua Clip11262 1129279 NP_470129.1 CDS lin0787 NC_003212.1 812656 813297 R similar to Bacillus subtilis YwnB protein; hypothetical protein complement(812656..813297) Listeria innocua Clip11262 1129280 NP_470130.1 CDS lin0788 NC_003212.1 813385 814311 R hypothetical protein complement(813385..814311) Listeria innocua Clip11262 1129281 NP_470131.1 CDS lin0789 NC_003212.1 814421 814951 R hypothetical protein complement(814421..814951) Listeria innocua Clip11262 1129282 NP_470132.1 CDS lin0790 NC_003212.1 815207 815668 D lin0790; hypothetical protein 815207..815668 Listeria innocua Clip11262 1129283 NP_470133.1 CDS lin0791 NC_003212.1 815720 817180 R similar to lysine-specific permease; hypothetical protein complement(815720..817180) Listeria innocua Clip11262 1129284 NP_470134.1 CDS lin0792 NC_003212.1 817538 818299 R lin0792; hypothetical protein complement(817538..818299) Listeria innocua Clip11262 1129285 NP_470135.1 CDS lin0793 NC_003212.1 818452 818802 D similar to Bacillus subtilis YqkB protein; hypothetical protein 818452..818802 Listeria innocua Clip11262 1129286 NP_470136.1 CDS lin0794 NC_003212.1 818953 819591 D weakly similar to GTP-pyrophosphokinase; hypothetical protein 818953..819591 Listeria innocua Clip11262 1129287 NP_470137.1 CDS lin0795 NC_003212.1 819721 821769 D similar to putative Na+/H+ antiporter; hypothetical protein 819721..821769 Listeria innocua Clip11262 1129288 NP_470138.1 CDS lin0796 NC_003212.1 821979 822521 D similar to transcription regulator; hypothetical protein 821979..822521 Listeria innocua Clip11262 1129289 NP_470139.1 CDS lin0797 NC_003212.1 822537 823631 D similar to spermidine/putrescine ABC transporter, ATP-binding protein; hypothetical protein 822537..823631 Listeria innocua Clip11262 1129290 NP_470140.1 CDS lin0798 NC_003212.1 823631 824440 D similar to spermidine/putrescine ABC transporter, permease protein; hypothetical protein 823631..824440 Listeria innocua Clip11262 1129292 NP_470141.1 CDS lin0799 NC_003212.1 824437 825243 D similar to spermidine/putrescine ABC transporter, permease protein; hypothetical protein 824437..825243 Listeria innocua Clip11262 1129294 NP_470142.1 CDS lin0800 NC_003212.1 825240 826313 D similar to spermidine/putrescine-binding protein; hypothetical protein 825240..826313 Listeria innocua Clip11262 1129295 NP_470143.1 CDS lin0801 NC_003212.1 826700 827422 D similar to two-component response regulators; hypothetical protein 826700..827422 Listeria innocua Clip11262 1129296 NP_470144.1 CDS lin0802 NC_003212.1 827483 828784 D similar to two-component sensor histidine kinases; hypothetical protein 827483..828784 Listeria innocua Clip11262 1129297 NP_470145.1 CDS lin0803 NC_003212.1 829124 833284 D cell wall anchor domain-containing protein 829124..833284 Listeria innocua Clip11262 1129298 NP_470146.1 CDS lin0804 NC_003212.1 833484 834476 D hypothetical protein 833484..834476 Listeria innocua Clip11262 1129299 NP_470147.1 CDS lin0805 NC_003212.1 834617 835390 R similar to oxidoreductase; hypothetical protein complement(834617..835390) Listeria innocua Clip11262 1129300 NP_470148.1 CDS lin0806 NC_003212.1 835475 835846 R similar to transcriptional regulator, MerR family; hypothetical protein complement(835475..835846) Listeria innocua Clip11262 1129301 NP_470149.1 CDS lin0807 NC_003212.1 836162 836863 D similar to carbonic anhydrase; hypothetical protein 836162..836863 Listeria innocua Clip11262 1129302 NP_470150.1 CDS lin0808 NC_003212.1 836931 837473 D lin0808; hypothetical protein 836931..837473 Listeria innocua Clip11262 1129303 NP_470151.1 CDS lin0809 NC_003212.1 837611 838483 D similar to fructokinases; hypothetical protein 837611..838483 Listeria innocua Clip11262 1129304 NP_470152.1 CDS lin0810 NC_003212.1 838568 839497 D similar to oxidoreductases; hypothetical protein 838568..839497 Listeria innocua Clip11262 1129305 NP_470153.1 CDS lin0811 NC_003212.1 839719 840171 D similar to transcription regulators; hypothetical protein 839719..840171 Listeria innocua Clip11262 1129306 NP_470154.1 CDS lin0812 NC_003212.1 840187 840693 D similar to Bacillus subtilis regulatory protein PaiA; hypothetical protein 840187..840693 Listeria innocua Clip11262 1129307 NP_470155.1 CDS lin0813 NC_003212.1 840717 841130 R similar to Escherichia coli PhnB protein; hypothetical protein complement(840717..841130) Listeria innocua Clip11262 1129308 NP_470156.1 CDS lin0814 NC_003212.1 841354 843984 D similar to cation transporting ATPase; hypothetical protein 841354..843984 Listeria innocua Clip11262 1129309 NP_470157.1 CDS lin0815 NC_003212.1 843999 844847 D lin0815; hypothetical protein 843999..844847 Listeria innocua Clip11262 1129310 NP_470158.1 CDS lin0816 NC_003212.1 844959 845516 D some similarity to acatyltransferases; hypothetical protein 844959..845516 Listeria innocua Clip11262 1129311 NP_470159.1 CDS lin0817 NC_003212.1 845533 846192 D lin0817; hypothetical protein 845533..846192 Listeria innocua Clip11262 1129312 NP_470160.1 CDS lin0818 NC_003212.1 846211 846600 R similar to transcriptional regulators; hypothetical protein complement(846211..846600) Listeria innocua Clip11262 1129313 NP_470161.1 CDS lin0819 NC_003212.1 846721 847545 D similar to oxydoreductases; hypothetical protein 846721..847545 Listeria innocua Clip11262 1129314 NP_470162.1 CDS lin0820 NC_003212.1 847656 848624 D lin0820; hypothetical protein 847656..848624 Listeria innocua Clip11262 1129315 NP_470163.1 CDS lin0821 NC_003212.1 848666 849946 D similar to 3-hydroxy-3-methylglutaryl-coenzyme a reductase; hypothetical protein 848666..849946 Listeria innocua Clip11262 1129316 NP_470164.1 CDS lin0822 NC_003212.1 850143 850904 D similar to transport protein (Truncated, N-terminal part); hypothetical protein 850143..850904 Listeria innocua Clip11262 1129317 NP_470165.1 CDS lin0823 NC_003212.1 850919 851776 D similar to transport protein (truncated, C-terminal part); hypothetical protein 850919..851776 Listeria innocua Clip11262 1129318 NP_470166.1 CDS lin0824 NC_003212.1 851932 855582 D highly similar to pyruvate-flavodoxin oxidoreductase; hypothetical protein 851932..855582 Listeria innocua Clip11262 1129319 NP_470167.1 CDS lin0825 NC_003212.1 855833 857794 R highly similar to fructose-1,6-bisphosphatase; hypothetical protein complement(855833..857794) Listeria innocua Clip11262 1129320 NP_470168.1 CDS lin0826 NC_003212.1 857907 858818 R lin0826; hypothetical protein complement(857907..858818) Listeria innocua Clip11262 1129321 NP_470169.1 CDS lin0827 NC_003212.1 859530 859808 D similar to transposase; hypothetical protein 859530..859808 Listeria innocua Clip11262 1129322 NP_470170.1 CDS lin0828 NC_003212.1 859848 860261 R similar to Bacillus subtilis YrkR protein; phosphate-starvation-inducible protein PsiE complement(859848..860261) Listeria innocua Clip11262 1129323 NP_470171.1 CDS lin0829 NC_003212.1 860435 862072 D similar to ABC transporter (ATP binding protein); hypothetical protein 860435..862072 Listeria innocua Clip11262 1129324 NP_470172.1 CDS lin0830 NC_003212.1 862103 863314 R similar to Tetracycline resistance protein; hypothetical protein complement(862103..863314) Listeria innocua Clip11262 1129325 NP_470173.1 CDS lin0831 NC_003212.1 863446 863916 R lin0831; hypothetical protein complement(863446..863916) Listeria innocua Clip11262 1129326 NP_470174.1 CDS lin0832 NC_003212.1 864122 866770 D similar to cation (calcium) transporting ATPase; hypothetical protein 864122..866770 Listeria innocua Clip11262 1129327 NP_470175.1 CDS lin0833 NC_003212.1 867168 868637 D lin0833; hypothetical protein 867168..868637 Listeria innocua Clip11262 1129328 NP_470176.1 CDS lin0834 NC_003212.1 868621 869730 D some similarities to hypothetical proteins; hypothetical protein 868621..869730 Listeria innocua Clip11262 1129330 NP_470177.1 CDS lin0835 NC_003212.1 869723 870580 D lin0835; hypothetical protein 869723..870580 Listeria innocua Clip11262 1129332 NP_470178.1 CDS lin0836 NC_003212.1 870970 871227 R similar to Bacillus subtilis protein YsdA; hypothetical protein complement(870970..871227) Listeria innocua Clip11262 1129333 NP_470179.1 CDS lin0837 NC_003212.1 871306 871683 D hypothetical protein 871306..871683 Listeria innocua Clip11262 1129334 NP_470180.1 CDS lin0838 NC_003212.1 871939 873042 D similar to Bacillus subtilis YxjH and YxjG proteins; hypothetical protein 871939..873042 Listeria innocua Clip11262 1129335 NP_470181.1 CDS lin0839 NC_003212.1 873139 874239 D similar to excinuclease ABC, chain C (UvrC); hypothetical protein 873139..874239 Listeria innocua Clip11262 1129336 NP_470182.1 CDS lin0840 NC_003212.1 874410 875852 D similar to Glutamine ABC transporter (binding and transport protein); hypothetical protein 874410..875852 Listeria innocua Clip11262 1129337 NP_470183.1 CDS lin0841 NC_003212.1 875845 876573 D similar to amino acid ABC transporter, ATP-binding protein; hypothetical protein 875845..876573 Listeria innocua Clip11262 1129338 NP_470184.1 CDS lin0842 NC_003212.1 876617 878536 R similar to amidases; catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(876617..878536) Listeria innocua Clip11262 1129339 NP_470185.1 CDS lin0843 NC_003212.1 879012 879158 D hypothetical protein 879012..879158 Listeria innocua Clip11262 1129340 NP_470186.1 CDS lin0844 NC_003212.1 879384 880142 D lin0844; hypothetical protein 879384..880142 Listeria innocua Clip11262 1129341 NP_470187.1 CDS lin0845 NC_003212.1 880224 880778 D similar to transcription regulator TetR/AcrR family; hypothetical protein 880224..880778 Listeria innocua Clip11262 1129342 NP_470188.1 CDS lin0846 NC_003212.1 880795 881136 D similar to Escherichia coli SugE protein (transmembrane chaperone); hypothetical protein 880795..881136 Listeria innocua Clip11262 1129343 NP_470189.1 CDS lin0847 NC_003212.1 881139 881459 D similar to Escherichia coli SugE protein (transmembrane chaperone); hypothetical protein 881139..881459 Listeria innocua Clip11262 1129345 NP_470190.1 CDS ddl NC_003212.1 881610 882722 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 881610..882722 Listeria innocua Clip11262 1129346 NP_470191.1 CDS murF NC_003212.1 882786 884159 D UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate-D-alanyl-D-alanyl ligase 882786..884159 Listeria innocua Clip11262 1129347 NP_470192.1 CDS lin0850 NC_003212.1 884226 884939 D similar to carboxylesterase; hypothetical protein 884226..884939 Listeria innocua Clip11262 1129348 NP_470193.1 CDS lin0851 NC_003212.1 884950 885975 R similar to transcription regulator lacI family; hypothetical protein complement(884950..885975) Listeria innocua Clip11262 1129349 NP_470194.1 CDS lin0852 NC_003212.1 886220 887542 D similar to putative sugar ABC transporter, periplasmic sugar-binding protein; hypothetical protein 886220..887542 Listeria innocua Clip11262 1129350 NP_470195.1 CDS lin0853 NC_003212.1 887539 888417 D similar to sugar ABC transporter, permease protein; hypothetical protein 887539..888417 Listeria innocua Clip11262 1129351 NP_470196.1 CDS lin0854 NC_003212.1 888404 889237 D similar to sugar ABC transporter, permease protein -; hypothetical protein 888404..889237 Listeria innocua Clip11262 1129353 NP_470197.1 CDS lin0855 NC_003212.1 889253 890785 D similar to oligo-1,6-glucosidase; hypothetical protein 889253..890785 Listeria innocua Clip11262 1129354 NP_470198.1 CDS lin0856 NC_003212.1 890787 891701 D lin0856; hypothetical protein 890787..891701 Listeria innocua Clip11262 1129356 NP_470199.1 CDS lin0857 NC_003212.1 891723 892790 D lin0857; hypothetical protein 891723..892790 Listeria innocua Clip11262 1129357 NP_470200.1 CDS lin0858 NC_003212.1 892787 894460 D similar to phosphomannomutase; hypothetical protein 892787..894460 Listeria innocua Clip11262 1129358 NP_470201.1 CDS lin0859 NC_003212.1 894912 896462 D similar to ATP-dependent RNA helicase; hypothetical protein 894912..896462 Listeria innocua Clip11262 1129359 NP_470202.1 CDS lin0860 NC_003212.1 896906 897394 D lin0860; hypothetical protein 896906..897394 Listeria innocua Clip11262 1129360 NP_470203.1 CDS lin0861 NC_003212.1 897426 897983 R lin0861; hypothetical protein complement(897426..897983) Listeria innocua Clip11262 1129361 NP_470204.1 CDS lin0862 NC_003212.1 898085 899083 D lin0862; hypothetical protein 898085..899083 Listeria innocua Clip11262 1129362 NP_470205.1 CDS lin0863 NC_003212.1 899100 899411 D lin0863; hypothetical protein 899100..899411 Listeria innocua Clip11262 1129363 NP_470206.1 CDS lin0864 NC_003212.1 899647 900486 R similar to transcription regulator; hypothetical protein complement(899647..900486) Listeria innocua Clip11262 1129364 NP_470207.1 CDS lin0865 NC_003212.1 900943 901338 D hypothetical protein 900943..901338 Listeria innocua Clip11262 1129365 NP_470208.1 CDS lin0866 NC_003212.1 901382 902053 D similar to ABC transporters, ATP-binding protein homologue; hypothetical protein 901382..902053 Listeria innocua Clip11262 1129366 NP_470209.1 CDS lin0867 NC_003212.1 902046 903311 D lin0867; hypothetical protein 902046..903311 Listeria innocua Clip11262 1129368 NP_470210.1 CDS lin0868 NC_003212.1 903326 904462 D lin0868; hypothetical protein 903326..904462 Listeria innocua Clip11262 1129369 NP_470211.1 CDS lin0869 NC_003212.1 904570 904923 R similar to Bacillus subtilis YtcD protein; hypothetical protein complement(904570..904923) Listeria innocua Clip11262 1129370 NP_470212.1 CDS lin0870 NC_003212.1 905051 906217 D similar to antibiotic resistance protein; hypothetical protein 905051..906217 Listeria innocua Clip11262 1129371 NP_470213.1 CDS lin0871 NC_003212.1 906425 908443 D Similar to transcriptional regulator (antiterminator); hypothetical protein 906425..908443 Listeria innocua Clip11262 1129372 NP_470214.1 CDS lin0872 NC_003212.1 908458 908787 D similar to PTS system enzyme IIA component; hypothetical protein 908458..908787 Listeria innocua Clip11262 1129373 NP_470215.1 CDS lin0873 NC_003212.1 908788 909123 D similar to PTS system, beta-glucoside enzyme IIB component; hypothetical protein 908788..909123 Listeria innocua Clip11262 1129375 NP_470216.1 CDS lin0874 NC_003212.1 909144 910469 D similar to PTS system, Lichenan-specific enzyme IIC component; hypothetical protein 909144..910469 Listeria innocua Clip11262 1129376 NP_470217.1 CDS lin0875 NC_003212.1 910492 911220 D similar to Bacillus subtilis NagB protein (glucosamine-6-phosphate isomerase); hypothetical protein 910492..911220 Listeria innocua Clip11262 1129377 NP_470218.1 CDS lin0876 NC_003212.1 911220 912173 D similar to oxidoreductases; hypothetical protein 911220..912173 Listeria innocua Clip11262 1129378 NP_470219.1 CDS lin0877 NC_003212.1 912191 912367 D hypothetical protein 912191..912367 Listeria innocua Clip11262 1129379 NP_470220.1 CDS lin0879 NC_003212.1 913072 914463 D similar to wall associated protein precursor (LPXTG motif); hypothetical protein 913072..914463 Listeria innocua Clip11262 1129381 NP_470221.1 CDS lin0880 NC_003212.1 914504 914980 R lin0880; hypothetical protein complement(914504..914980) Listeria innocua Clip11262 1129382 NP_470222.1 CDS lin0881 NC_003212.1 915114 915596 D similar to Bacillus subtilis YdbS protein; hypothetical protein 915114..915596 Listeria innocua Clip11262 1129383 NP_470223.1 CDS lin0882 NC_003212.1 915589 917073 D similar to Bacillus subtilis YbtB protein; hypothetical protein 915589..917073 Listeria innocua Clip11262 1129385 NP_470224.1 CDS lin0883 NC_003212.1 917224 918603 D similar to protoporphyrinogen IX and coproporphyrinogen III oxidase (HemY); catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX; protoporphyrinogen oxidase 917224..918603 Listeria innocua Clip11262 1129386 NP_470225.1 CDS acpS NC_003212.1 918605 918961 D similar to holo-acyl-carrier protein synthase; Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 918605..918961 Listeria innocua Clip11262 1129387 NP_470226.1 CDS lin0885 NC_003212.1 918980 920086 D similar to alanine racemase; hypothetical protein 918980..920086 Listeria innocua Clip11262 1129388 NP_470227.1 CDS lin0886 NC_003212.1 920292 920570 D similar to Bacillus subtilis YdcD protein; hypothetical protein 920292..920570 Listeria innocua Clip11262 1129389 NP_470228.1 CDS lin0887 NC_003212.1 920574 920921 D similar to Bacillus subtilis YdcE protein; hypothetical protein 920574..920921 Listeria innocua Clip11262 1129391 NP_470229.1 CDS lin0888 NC_003212.1 921173 922009 D highly similar to positive regulator of sigma-B activity; hypothetical protein 921173..922009 Listeria innocua Clip11262 1129392 NP_470230.1 CDS lin0889 NC_003212.1 922015 922371 D highly similar to negative regulation of sigma-B activity; hypothetical protein 922015..922371 Listeria innocua Clip11262 1129394 NP_470231.1 CDS lin0890 NC_003212.1 922374 922784 D highly similar to positive regulation of sigma-B activity; hypothetical protein 922374..922784 Listeria innocua Clip11262 1129395 NP_470232.1 CDS lin0891 NC_003212.1 922801 923805 D highly similar to serine phosphatase RsbU; hypothetical protein 922801..923805 Listeria innocua Clip11262 1129396 NP_470233.1 CDS rsbV NC_003212.1 923955 924299 D anti-anti-sigma factor (antagonist of RsbW) 923955..924299 Listeria innocua Clip11262 1129397 NP_470234.1 CDS rsbW NC_003212.1 924283 924756 D binds to sigma-B preventing the formation of an RNA polymerase holoenzyme; serine-protein kinase RsbW 924283..924756 Listeria innocua Clip11262 1129399 NP_470235.1 CDS sigB NC_003212.1 924734 925513 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma B is not essential for sporulation; rather it is required for maximal expression of ctc and csbA which are transcribed in the early stationary phase under conditions inimical to sporulation; induced by heat shock, salt stress, oxidative stress, glucose limitation, oxygen limitation and entry into stationary phase; RNA polymerase sigma factor SigB 924734..925513 Listeria innocua Clip11262 1129401 NP_470236.1 CDS rsbX NC_003212.1 925514 926113 D indirect negative regulation of sigma B dependant gene expression (serine phosphatase) 925514..926113 Listeria innocua Clip11262 1129403 NP_470237.1 CDS lin0896 NC_003212.1 926317 927951 D similar to transport proteins; hypothetical protein 926317..927951 Listeria innocua Clip11262 1129404 NP_470238.1 CDS lin0897 NC_003212.1 928019 930196 D hypothetical protein 928019..930196 Listeria innocua Clip11262 1129405 NP_470239.1 CDS lin0898 NC_003212.1 930196 930663 D similar to Bacillus subtilis YdcK protein; hypothetical protein 930196..930663 Listeria innocua Clip11262 1129406 NP_470240.1 CDS lin0899 NC_003212.1 930995 931387 D lin0899; hypothetical protein 930995..931387 Listeria innocua Clip11262 1129407 NP_470241.1 CDS lin0900 NC_003212.1 931529 932815 D similar to PTS system, cellobiose-specific IIC component; hypothetical protein 931529..932815 Listeria innocua Clip11262 1129408 NP_470242.1 CDS lin0901 NC_003212.1 932896 933609 D similar to transcription regulator (GntR family); hypothetical protein 932896..933609 Listeria innocua Clip11262 1129409 NP_470243.1 CDS lin0902 NC_003212.1 934108 934488 D hypothetical protein 934108..934488 Listeria innocua Clip11262 1129410 NP_470244.1 CDS lin0903 NC_003212.1 934605 934895 D truncated N-terminal part 934605..934895 Listeria innocua Clip11262 1129411 NP_470245.1 CDS lin0905 NC_003212.1 935411 935908 D lin0905; hypothetical protein 935411..935908 Listeria innocua Clip11262 1129413 NP_470246.1 CDS lin0906 NC_003212.1 935944 937293 D similar to glutathione Reductase; catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 935944..937293 Listeria innocua Clip11262 1129414 NP_470247.1 CDS lin0907 NC_003212.1 937322 937996 D similar to phosphoglycerate mutase; hypothetical protein 937322..937996 Listeria innocua Clip11262 1129415 NP_470248.1 CDS lin0908 NC_003212.1 938039 939175 R similar to membrane proteins; hypothetical protein complement(938039..939175) Listeria innocua Clip11262 1129416 NP_470249.1 CDS lin0909 NC_003212.1 939317 939709 D similar to transcription regulator, GntR family; hypothetical protein 939317..939709 Listeria innocua Clip11262 1129417 NP_470250.1 CDS lin0910 NC_003212.1 939712 940815 D lin0910; hypothetical protein 939712..940815 Listeria innocua Clip11262 1129418 NP_470251.1 CDS lin0911 NC_003212.1 940917 941420 D lin0911; hypothetical protein 940917..941420 Listeria innocua Clip11262 1129419 NP_470252.1 CDS lin0912 NC_003212.1 941535 942347 D similar to transporters (formate); hypothetical protein 941535..942347 Listeria innocua Clip11262 1129420 NP_470253.1 CDS lin0913 NC_003212.1 942571 944037 D similar to succinate semialdehyde dehydrogenase; hypothetical protein 942571..944037 Listeria innocua Clip11262 1129421 NP_470254.1 CDS lin0914 NC_003212.1 944179 944484 D similar to PTS system, IIB component; hypothetical protein 944179..944484 Listeria innocua Clip11262 1129422 NP_470255.1 CDS lin0915 NC_003212.1 944489 944764 D similar to phosphotransferase system enzyme IIC (truncated, N-terminal end); hypothetical protein 944489..944764 Listeria innocua Clip11262 1129424 NP_470256.1 CDS lin0917 NC_003212.1 945773 946123 D similar to phosphotransferase system enzyme IIA; hypothetical protein 945773..946123 Listeria innocua Clip11262 1129426 NP_470257.1 CDS lin0918 NC_003212.1 946135 947586 D similar to beta-glucosidase; hypothetical protein 946135..947586 Listeria innocua Clip11262 1129427 NP_470258.1 CDS lin0919 NC_003212.1 947659 949557 D similar to transcription antiterminator BglG family; hypothetical protein 947659..949557 Listeria innocua Clip11262 1129428 NP_470259.1 CDS lin0920 NC_003212.1 949848 951419 D similar to ABC transporter ATP-binding protein (antibiotic resistance); hypothetical protein 949848..951419 Listeria innocua Clip11262 1129429 NP_470260.1 CDS lin0921 NC_003212.1 951541 952581 D similar to Bacillus subtilis YcgR protein; hypothetical protein 951541..952581 Listeria innocua Clip11262 1129430 NP_470261.1 CDS lin0922 NC_003212.1 952600 953439 D similar to Bacillus subtilis YcgQ protein; hypothetical protein 952600..953439 Listeria innocua Clip11262 1129431 NP_470262.1 CDS lin0923 NC_003212.1 953528 954448 D similar to pantothenate kinase; catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 953528..954448 Listeria innocua Clip11262 1129432 NP_470263.1 CDS lin0924 NC_003212.1 954564 955286 D similar to ABC transporter, ATP-binding protein; hypothetical protein 954564..955286 Listeria innocua Clip11262 1129433 NP_470264.1 CDS lin0925 NC_003212.1 955286 956401 D hypothetical protein 955286..956401 Listeria innocua Clip11262 1129435 NP_470265.1 CDS lin0926 NC_003212.1 956421 957077 D similar to transcription regulator (TetR/AcrR family); hypothetical protein 956421..957077 Listeria innocua Clip11262 1129436 NP_470266.1 CDS lin0927 NC_003212.1 957109 959070 R hypothetical protein complement(957109..959070) Listeria innocua Clip11262 1129437 NP_470267.1 CDS lin0928 NC_003212.1 959328 959951 D similar to 3-methyladenine DNA glycosylase; responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 959328..959951 Listeria innocua Clip11262 1129438 NP_470268.1 CDS lin0929 NC_003212.1 960059 960727 D similar to sortase; hypothetical protein 960059..960727 Listeria innocua Clip11262 1129439 NP_470269.1 CDS lin0930 NC_003212.1 960847 961578 D conserved hypothetical protein, similar to Bacillus subtilis YhfI protein; hypothetical protein 960847..961578 Listeria innocua Clip11262 1129440 NP_470270.1 CDS lin0931 NC_003212.1 961603 962598 D similar to lipoate protein ligase A; hypothetical protein 961603..962598 Listeria innocua Clip11262 1129441 NP_470271.1 CDS lin0932 NC_003212.1 962633 963238 R hypothetical protein complement(962633..963238) Listeria innocua Clip11262 1129442 NP_470272.1 CDS lin0933 NC_003212.1 963627 964769 D similar to Bacillus subtilis YhbA protein; hypothetical protein 963627..964769 Listeria innocua Clip11262 1129443 NP_470273.1 CDS lin0935 NC_003212.1 965312 966052 D similar to Nitroflavin-reductase; hypothetical protein 965312..966052 Listeria innocua Clip11262 1129445 NP_470274.1 CDS lin0936 NC_003212.1 966104 966265 R lin0936; hypothetical protein complement(966104..966265) Listeria innocua Clip11262 1129446 NP_470275.1 CDS lin0937 NC_003212.1 966351 966809 R similar to protein-tyrosine-phosphatase; hypothetical protein complement(966351..966809) Listeria innocua Clip11262 1129447 NP_470276.1 CDS lin0938 NC_003212.1 966822 967568 R lin0938; hypothetical protein complement(966822..967568) Listeria innocua Clip11262 1129448 NP_470277.1 CDS lin0939 NC_003212.1 967659 968621 R lin0939; hypothetical protein complement(967659..968621) Listeria innocua Clip11262 1129449 NP_470278.1 CDS lin0941 NC_003212.1 968742 970436 R similar to heat shock protein HtpG; HSP90 family protein complement(968742..970436) Listeria innocua Clip11262 1129451 NP_470279.1 CDS fri NC_003212.1 970638 971108 D non-heme iron-binding ferritin 970638..971108 Listeria innocua Clip11262 1129452 NP_470280.1 CDS lin0943 NC_003212.1 971343 971645 D similar to Bacillus subtilis YneR protein; hypothetical protein 971343..971645 Listeria innocua Clip11262 1129453 NP_470281.1 CDS lin0944 NC_003212.1 971760 972890 D similar to C-terminal part of Bacillus subtilis ComEC protein and to ComEA; hypothetical protein 971760..972890 Listeria innocua Clip11262 1129454 NP_470282.1 CDS lin0945 NC_003212.1 972900 973127 D lin0945; hypothetical protein 972900..973127 Listeria innocua Clip11262 1129455 NP_470283.1 CDS lin0946 NC_003212.1 973326 974543 R hypothetical transport protein; hypothetical protein complement(973326..974543) Listeria innocua Clip11262 1129456 NP_470284.1 CDS lin0947 NC_003212.1 974540 975229 R similar to transcription regulator; hypothetical protein complement(974540..975229) Listeria innocua Clip11262 1129457 NP_470285.1 CDS lin0948 NC_003212.1 975351 976397 D hypothetical protein 975351..976397 Listeria innocua Clip11262 1129458 NP_470286.1 CDS lin0949 NC_003212.1 976407 977309 R lin0949; hypothetical protein complement(976407..977309) Listeria innocua Clip11262 1129459 NP_470287.1 CDS lin0950 NC_003212.1 977329 978150 R lin0950; hypothetical protein complement(977329..978150) Listeria innocua Clip11262 1129460 NP_470288.1 CDS lin0951 NC_003212.1 978308 978766 D lin0951; hypothetical protein 978308..978766 Listeria innocua Clip11262 1129461 NP_470289.1 CDS lin0952 NC_003212.1 978861 979085 D lin0952; hypothetical protein 978861..979085 Listeria innocua Clip11262 1129462 NP_470290.1 CDS lin0953 NC_003212.1 979304 979618 D lin0953; hypothetical protein 979304..979618 Listeria innocua Clip11262 1129463 NP_470291.1 CDS lin0954 NC_003212.1 979634 980479 D lin0954; hypothetical protein 979634..980479 Listeria innocua Clip11262 1129464 NP_470292.1 CDS lin0955 NC_003212.1 980668 981801 D similar to N-acetylglucosamine-6P-phosphate deacetylase (EC 3.5.1.25); hypothetical protein 980668..981801 Listeria innocua Clip11262 1129465 NP_470293.1 CDS lin0956 NC_003212.1 981817 982521 D similar to glucosamine-6-Phoasphate isomerase (EC 5.3.1.10); hypothetical protein 981817..982521 Listeria innocua Clip11262 1129466 NP_470294.1 CDS lin0957 NC_003212.1 982537 983259 D similar to transcription regulator (GntR family); hypothetical protein 982537..983259 Listeria innocua Clip11262 1129467 NP_470295.1 CDS lin0958 NC_003212.1 983394 984449 D similar to undacaprenyl-phosphate N-acetylglucosaminyltransferase; hypothetical protein 983394..984449 Listeria innocua Clip11262 1129468 NP_470296.1 CDS lin0959 NC_003212.1 984563 985471 D similar to proteases; hypothetical protein 984563..985471 Listeria innocua Clip11262 1129469 NP_470297.1 CDS lin0960 NC_003212.1 985485 986711 D similar to proteases; hypothetical protein 985485..986711 Listeria innocua Clip11262 1129470 NP_470298.1 CDS lemA NC_003212.1 986794 987351 D epitope LemA 986794..987351 Listeria innocua Clip11262 1129471 NP_470299.1 CDS lin0962 NC_003212.1 987374 988288 D similar to putative heat shock protein HtpX, Listeria epitope LemB; putative metalloprotease; heat shock protein HtpX 987374..988288 Listeria innocua Clip11262 1129472 NP_470300.1 CDS lin0963 NC_003212.1 988329 989147 R similar to Bacillus subtilis YjbH protein; hypothetical protein complement(988329..989147) Listeria innocua Clip11262 1129473 NP_470301.1 CDS lin0964 NC_003212.1 989393 989977 R similar to Bacillus subtilis YjbK protein; hypothetical protein complement(989393..989977) Listeria innocua Clip11262 1129474 NP_470302.1 CDS lin0965 NC_003212.1 989994 990461 R lin0965; hypothetical protein complement(989994..990461) Listeria innocua Clip11262 1129475 NP_470303.1 CDS lin0966 NC_003212.1 990620 991288 D similar to Bacillus subtilis YjbM protein; hypothetical protein 990620..991288 Listeria innocua Clip11262 1129476 NP_470304.1 CDS ppnK NC_003212.1 991320 992114 D Probable inorganic polyphosphate/ATP-NAD kinase 1; catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 991320..992114 Listeria innocua Clip11262 1129477 NP_470305.1 CDS lin0968 NC_003212.1 992133 993023 D similar to ribosomal large subunit pseudouridine synthetase; hypothetical protein 992133..993023 Listeria innocua Clip11262 1129478 NP_470306.1 CDS lin0969 NC_003212.1 993101 993889 D similar to enoyl- acyl-carrier protein reductase; Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 993101..993889 Listeria innocua Clip11262 1129479 NP_470307.1 CDS dltD NC_003212.1 993921 995195 R DltD protein for D-alanine esterification of lipoteichoic acid and wall teichoic acid complement(993921..995195) Listeria innocua Clip11262 1129480 NP_470308.1 CDS dltC NC_003212.1 995195 995431 R D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 2 complement(995195..995431) Listeria innocua Clip11262 1129481 NP_470309.1 CDS dltB NC_003212.1 995456 996640 R DltB protein for D-alanine esterification of lipoteichoic acid and wall teichoic acid complement(995456..996640) Listeria innocua Clip11262 1129483 NP_470310.1 CDS dltA NC_003212.1 996637 998169 R transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 1 complement(996637..998169) Listeria innocua Clip11262 1129484 NP_470311.1 CDS lin0974 NC_003212.1 998561 999235 D similar to ribose 5-phosphate isomerase; Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 998561..999235 Listeria innocua Clip11262 1129486 NP_470312.1 CDS lin0975 NC_003212.1 999271 999708 R similar to Bacillus subtilis YjcF protein; hypothetical protein complement(999271..999708) Listeria innocua Clip11262 1129487 NP_470313.1 CDS lin0976 NC_003212.1 999725 1000474 R similar to Bacillus subtilis YjcH protein; hypothetical protein complement(999725..1000474) Listeria innocua Clip11262 1129488 NP_470314.1 CDS lin0977 NC_003212.1 1000693 1001712 D similar to branched-chain amino acid aminotransferase; catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 1000693..1001712 Listeria innocua Clip11262 1129489 NP_470315.1 CDS lin0978 NC_003212.1 1001906 1002670 D similar to daunorubicin resistance ATP-binding proteins; hypothetical protein 1001906..1002670 Listeria innocua Clip11262 1129490 NP_470316.1 CDS lin0979 NC_003212.1 1002667 1003419 D similar to ABC transporter transmembrane component; hypothetical protein 1002667..1003419 Listeria innocua Clip11262 1129492 NP_470317.1 CDS lin0980 NC_003212.1 1003456 1004931 R similar to efflux transporter; hypothetical protein complement(1003456..1004931) Listeria innocua Clip11262 1129493 NP_470318.1 CDS lin0981 NC_003212.1 1005071 1006123 D similar to glucanase and peptidase; hypothetical protein 1005071..1006123 Listeria innocua Clip11262 1129494 NP_470319.1 CDS lin0982 NC_003212.1 1006136 1006612 D similar to glutathione peroxidase; hypothetical protein 1006136..1006612 Listeria innocua Clip11262 1129495 NP_470320.1 CDS lin0983 NC_003212.1 1006749 1007204 D weakly similar to two-component response regulator; hypothetical protein 1006749..1007204 Listeria innocua Clip11262 1129496 NP_470321.1 CDS lin0984 NC_003212.1 1007201 1007629 D lin0984; hypothetical protein 1007201..1007629 Listeria innocua Clip11262 1129498 NP_470322.1 CDS lin0985 NC_003212.1 1007626 1008537 D similar to antibiotic ABC transporter, ATP-binding protein; hypothetical protein 1007626..1008537 Listeria innocua Clip11262 1129500 NP_470323.1 CDS lin0986 NC_003212.1 1008530 1009384 D similar to Streptococcus agalactiae CylB protein; hypothetical protein 1008530..1009384 Listeria innocua Clip11262 1129502 NP_470324.1 CDS prfC NC_003212.1 1009466 1011034 D similar to peptide chain release factor 3 (RF-3); stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1009466..1011034 Listeria innocua Clip11262 1129503 NP_470325.1 CDS lin0988 NC_003212.1 1011144 1011569 D similar to regulatory proteins (MarR family); hypothetical protein 1011144..1011569 Listeria innocua Clip11262 1129504 NP_470326.1 CDS lin0989 NC_003212.1 1011622 1012983 D hypothetical protein 1011622..1012983 Listeria innocua Clip11262 1129505 NP_470327.1 CDS lin0990 NC_003212.1 1013264 1014031 D hypothetical protein 1013264..1014031 Listeria innocua Clip11262 1129506 NP_470328.1 CDS lin0991 NC_003212.1 1014136 1014903 D hypothetical protein 1014136..1014903 Listeria innocua Clip11262 1129507 NP_470329.1 CDS lin0992 NC_003212.1 1014944 1016281 D similar to Na+-transporting ATP synthase subunit J; hypothetical protein 1014944..1016281 Listeria innocua Clip11262 1129508 NP_470330.1 CDS lin0993 NC_003212.1 1016363 1016731 R lin0993; hypothetical protein complement(1016363..1016731) Listeria innocua Clip11262 1129509 NP_470331.1 CDS lin0994 NC_003212.1 1016761 1017792 R similar to Bacillus subtilis YkrP protein; hypothetical protein complement(1016761..1017792) Listeria innocua Clip11262 1129510 NP_470332.1 CDS lin0995 NC_003212.1 1017980 1018459 D similar to methylated-DNA-protein-cystein methyltransferase; hypothetical protein 1017980..1018459 Listeria innocua Clip11262 1129511 NP_470333.1 CDS clpE NC_003212.1 1018475 1020649 R ATP-dependent protease complement(1018475..1020649) Listeria innocua Clip11262 1129512 NP_470334.1 CDS lin0997 NC_003212.1 1020813 1021424 R similar to hypothetical protein; hypothetical protein complement(1020813..1021424) Listeria innocua Clip11262 1129513 NP_470335.1 CDS lin0998 NC_003212.1 1021569 1022360 D lin0998; hypothetical protein 1021569..1022360 Listeria innocua Clip11262 1129514 NP_470336.1 CDS lin0999 NC_003212.1 1022373 1023839 R similar to phytoene dehydrogenase; hypothetical protein complement(1022373..1023839) Listeria innocua Clip11262 1129515 NP_470337.1 CDS lin1000 NC_003212.1 1023943 1024212 R similar to Bacillus subtilis protein YkvS; hypothetical protein complement(1023943..1024212) Listeria innocua Clip11262 1129516 NP_470338.1 CDS ptsH NC_003212.1 1024521 1024787 D phosphocarrier protein HPr 1024521..1024787 Listeria innocua Clip11262 1129517 NP_470339.1 CDS lin1002 NC_003212.1 1024787 1026505 D phosphotransferase system enzyme I 1024787..1026505 Listeria innocua Clip11262 1129519 NP_470340.1 CDS lin1003 NC_003212.1 1026618 1027652 D hypothetical protein 1026618..1027652 Listeria innocua Clip11262 1129520 NP_470341.1 CDS lin1004 NC_003212.1 1027665 1028525 D similar to 3-hydroxyisobutyrate dehydrogenase (Bacillus subtilis YkwC protein); hypothetical protein 1027665..1028525 Listeria innocua Clip11262 1129521 NP_470342.1 CDS lin1005 NC_003212.1 1028563 1029708 R similar to aminotransferases (to Bacillus subtilis PatA protein); hypothetical protein complement(1028563..1029708) Listeria innocua Clip11262 1129522 NP_470343.1 CDS lin1006 NC_003212.1 1029928 1030149 D lin1006; hypothetical protein 1029928..1030149 Listeria innocua Clip11262 1129523 NP_470344.1 CDS lin1007 NC_003212.1 1030462 1030695 D similar to Bacillus subtilis YkuJ protein; hypothetical protein 1030462..1030695 Listeria innocua Clip11262 1129524 NP_470345.1 CDS lin1008 NC_003212.1 1030912 1031364 D similar to Bacillus subtilis YkuL protein; hypothetical protein 1030912..1031364 Listeria innocua Clip11262 1129525 NP_470346.1 CDS lin1009 NC_003212.1 1031361 1032239 D similar to transcription regulator (LysR family).; hypothetical protein 1031361..1032239 Listeria innocua Clip11262 1129527 NP_470347.1 CDS lin1010 NC_003212.1 1032287 1032997 D similar to tetrahydrodipicolinate succinylase; hypothetical protein 1032287..1032997 Listeria innocua Clip11262 1129528 NP_470348.1 CDS lin1011 NC_003212.1 1033060 1034175 D similar to N-acyl-L-amino acid amidohydrolases; hypothetical protein 1033060..1034175 Listeria innocua Clip11262 1129529 NP_470349.1 CDS lin1012 NC_003212.1 1034220 1035065 R similar to conserved hypothetical proteins like to Bacillus subtilis YkuT protein; hypothetical protein complement(1034220..1035065) Listeria innocua Clip11262 1129530 NP_470350.1 CDS lin1013 NC_003212.1 1035436 1036629 D highly similar to glycine betaine ABC transporter (ATP-binding protein); hypothetical protein 1035436..1036629 Listeria innocua Clip11262 1129531 NP_470351.1 CDS lin1014 NC_003212.1 1036622 1037470 D highly similar to glycine betaine ABC transporters (permease); hypothetical protein 1036622..1037470 Listeria innocua Clip11262 1129533 NP_470352.1 CDS lin1015 NC_003212.1 1037484 1038386 D highly similar to glycine betaine ABC transporters (glycine betaine-binding protein); hypothetical protein 1037484..1038386 Listeria innocua Clip11262 1129534 NP_470353.1 CDS lin1016 NC_003212.1 1038501 1038992 D similar to phosphotransferase system glucose-specific enzyme IIA; hypothetical protein 1038501..1038992 Listeria innocua Clip11262 1129535 NP_470354.1 CDS lin1017 NC_003212.1 1039105 1039800 D similar to Escherichia coli copper homeostasis protein CutC; hypothetical protein 1039105..1039800 Listeria innocua Clip11262 1129536 NP_470355.1 CDS lin1018 NC_003212.1 1039880 1040752 D similar to Bacillus subtilis YitL protein; hypothetical protein 1039880..1040752 Listeria innocua Clip11262 1129537 NP_470356.1 CDS lin1019 NC_003212.1 1040888 1041601 D similar to Bacillus subtilis YvqF protein; hypothetical protein 1040888..1041601 Listeria innocua Clip11262 1129538 NP_470357.1 CDS lin1020 NC_003212.1 1041598 1042656 D similar to two-component sensor histidine kinase in particular Bacillus subtilis YvqE protein; hypothetical protein 1041598..1042656 Listeria innocua Clip11262 1129539 NP_470358.1 CDS lin1021 NC_003212.1 1042653 1043291 D similar to two-component response regulator, in particular Bacillus subtilis YvqC protein; hypothetical protein 1042653..1043291 Listeria innocua Clip11262 1129541 NP_470359.1 CDS lin1022 NC_003212.1 1043310 1043969 D similar to a bacterial K(+)-uptake system; hypothetical protein 1043310..1043969 Listeria innocua Clip11262 1129542 NP_470360.1 CDS lin1023 NC_003212.1 1044114 1045034 D lin1023; hypothetical protein 1044114..1045034 Listeria innocua Clip11262 1129543 NP_470361.1 CDS lin1024 NC_003212.1 1045031 1045882 D lin1024; hypothetical protein 1045031..1045882 Listeria innocua Clip11262 1129544 NP_470362.1 CDS lin1025 NC_003212.1 1045926 1046891 R similar to Bacillus subtilis LytR protein; hypothetical protein complement(1045926..1046891) Listeria innocua Clip11262 1129545 NP_470363.1 CDS lin1026 NC_003212.1 1047000 1048667 R similar to conserved hypothetical proteins (in particular Bacillus subtilis YkqC); hypothetical protein complement(1047000..1048667) Listeria innocua Clip11262 1129546 NP_470364.1 CDS lin1027 NC_003212.1 1048674 1048883 R similar to Bacillus subtilis YkzG protein; hypothetical protein complement(1048674..1048883) Listeria innocua Clip11262 1129547 NP_470365.1 CDS lin1028 NC_003212.1 1049378 1050148 D hypothetical protein 1049378..1050148 Listeria innocua Clip11262 1129549 NP_470366.1 CDS lin1029 NC_003212.1 1050165 1050968 R highly similar to Bacillus subtilis YoaT protein; hypothetical protein complement(1050165..1050968) Listeria innocua Clip11262 1129550 NP_470367.1 CDS lin1030 NC_003212.1 1051035 1051616 R weakly similar to molybdopterin-guanine dinucleotide biosynthesis protein A; hypothetical protein complement(1051035..1051616) Listeria innocua Clip11262 1129551 NP_470368.1 CDS lin1031 NC_003212.1 1051597 1052259 R similar to ABC transporter, ATP-binding protein; hypothetical protein complement(1051597..1052259) Listeria innocua Clip11262 1129552 NP_470369.1 CDS lin1032 NC_003212.1 1052262 1052933 R similar to molybdenum ABC transporters (permease); hypothetical protein complement(1052262..1052933) Listeria innocua Clip11262 1129554 NP_470370.1 CDS lin1033 NC_003212.1 1053041 1053814 D similar to molybdate ABC transporter binding protein; hypothetical protein 1053041..1053814 Listeria innocua Clip11262 1129556 NP_470371.1 CDS lin1034 NC_003212.1 1053909 1055132 D similar to molybdopterin biosynthesis protein moeA; hypothetical protein 1053909..1055132 Listeria innocua Clip11262 1129557 NP_470372.1 CDS lin1035 NC_003212.1 1055111 1055596 D similar to molybdopterin-guanine dinucleotide biosynthesis MobB; hypothetical protein 1055111..1055596 Listeria innocua Clip11262 1129559 NP_470373.1 CDS lin1036 NC_003212.1 1055593 1056015 D similar to molybdopterin converting factor, subunit 2; hypothetical protein 1055593..1056015 Listeria innocua Clip11262 1129561 NP_470374.1 CDS lin1037 NC_003212.1 1055999 1056247 D similar to molybdopterin converting factor (subunit 1).; hypothetical protein 1055999..1056247 Listeria innocua Clip11262 1129562 NP_470375.1 CDS moaC NC_003212.1 1056260 1056742 D similar to molybdenum cofactor biosynthesis protein C; MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 1056260..1056742 Listeria innocua Clip11262 1129563 NP_470376.1 CDS moaA NC_003212.1 1056771 1057772 D similar to molybdenum cofactor biosynthesis protein A; together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 1056771..1057772 Listeria innocua Clip11262 1129564 NP_470377.1 CDS lin1040 NC_003212.1 1057805 1058293 R similar to molybdenum cofactor biosynthesis protein B; hypothetical protein complement(1057805..1058293) Listeria innocua Clip11262 1129565 NP_470378.1 CDS lin1041 NC_003212.1 1058305 1059303 R similar to molybdopterin biosynthesis protein MoeB; hypothetical protein complement(1058305..1059303) Listeria innocua Clip11262 1129566 NP_470379.1 CDS lin1042 NC_003212.1 1059440 1059991 D similar to Bacillus subtilis YdfE protein; hypothetical protein 1059440..1059991 Listeria innocua Clip11262 1129567 NP_470380.1 CDS def NC_003212.1 1060038 1060589 R similar to formylmethionine deformylase and to Bacillus subtilis YkrB protein; cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(1060038..1060589) Listeria innocua Clip11262 1129568 NP_470381.1 CDS lin1044 NC_003212.1 1061423 1062538 D highly similar to pyruvate dehydrogenase (E1 alpha subunit); hypothetical protein 1061423..1062538 Listeria innocua Clip11262 1129569 NP_470382.1 CDS lin1045 NC_003212.1 1062541 1063518 D highly similar to pyruvate dehydrogenase (E1 beta subunit); hypothetical protein 1062541..1063518 Listeria innocua Clip11262 1129571 NP_470383.1 CDS lin1046 NC_003212.1 1063629 1065263 D highly similar to pyruvate dehydrogenase (dihydrolipoamide acetyltransferase E2 subunit); Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; dihydrolipoamide acetyltransferase 1063629..1065263 Listeria innocua Clip11262 1129572 NP_470384.1 CDS lin1047 NC_003212.1 1065268 1066671 D highly similar to dihydrolipoamide dehydrogenase, E3 subunit of pyruvate dehydrogenase complex; E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1065268..1066671 Listeria innocua Clip11262 1129574 NP_470385.1 CDS lin1048 NC_003212.1 1066858 1067169 D lin1048; hypothetical protein 1066858..1067169 Listeria innocua Clip11262 1129575 NP_470386.1 CDS lin1049 NC_003212.1 1067298 1068248 D similar to L-lactate dehydrogenase; hypothetical protein 1067298..1068248 Listeria innocua Clip11262 1129576 NP_470387.1 CDS lin1050 NC_003212.1 1068248 1068520 D similar to Bacillus subtilis YktA protein; hypothetical protein 1068248..1068520 Listeria innocua Clip11262 1129577 NP_470388.1 CDS lin1051 NC_003212.1 1068541 1069071 D lin1051; hypothetical protein 1068541..1069071 Listeria innocua Clip11262 1129578 NP_470389.1 CDS lin1052 NC_003212.1 1069122 1070066 R similar to membrane and transport proteins; hypothetical protein complement(1069122..1070066) Listeria innocua Clip11262 1129579 NP_470390.1 CDS lin1053 NC_003212.1 1070267 1070881 R similar to Bacillus subtilis YktB protein; hypothetical protein complement(1070267..1070881) Listeria innocua Clip11262 1129580 NP_470391.1 CDS lin1054 NC_003212.1 1071013 1071786 D similar to extragenic suppressor protein SuhB and to myo-inositol-1(or 4)-monophosphatase; hypothetical protein 1071013..1071786 Listeria innocua Clip11262 1129581 NP_470392.1 CDS lin1055 NC_003212.1 1071978 1073816 D similar to GTP-binding elongation factor; hypothetical protein 1071978..1073816 Listeria innocua Clip11262 1129582 NP_470393.1 CDS lin1056 NC_003212.1 1073998 1074867 D lin1056; hypothetical protein 1073998..1074867 Listeria innocua Clip11262 1129583 NP_470394.1 CDS lin1057 NC_003212.1 1074900 1075130 R similar to Bacillus subtilis YlaI protein; hypothetical protein complement(1074900..1075130) Listeria innocua Clip11262 1129584 NP_470395.1 CDS lin1058 NC_003212.1 1075336 1075617 D similar to Bacillus subtilis YlaN protein; depletion of this protein in Bacillus subtilis results in defects in cell morphology; crystal structure of Staphylococcus protein shows homodimer; putative ligand binding protein; hypothetical protein 1075336..1075617 Listeria innocua Clip11262 1129585 NP_470396.1 CDS lin1059 NC_003212.1 1075790 1076992 D similar to cell-division protein RodA and FtsW; hypothetical protein 1075790..1076992 Listeria innocua Clip11262 1129586 NP_470397.1 CDS lin1060 NC_003212.1 1077267 1080707 D highly similar to pyruvate carboxylase; biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 1077267..1080707 Listeria innocua Clip11262 1129587 NP_470398.1 CDS lin1061 NC_003212.1 1080860 1081753 D similar to metal binding protein (ABC transporter); hypothetical protein 1080860..1081753 Listeria innocua Clip11262 1129588 NP_470399.1 CDS lin1062 NC_003212.1 1082035 1082838 D highly similar to teichoic acid translocation permease protein TagG; hypothetical protein 1082035..1082838 Listeria innocua Clip11262 1129589 NP_470400.1 CDS lin1063 NC_003212.1 1082851 1083858 D similar to teichoic acid translocation ATP-binding protein TagH (ABC transporter); hypothetical protein 1082851..1083858 Listeria innocua Clip11262 1129590 NP_470401.1 CDS lin1064 NC_003212.1 1084046 1086370 D similar to autolysin (amidase); hypothetical protein 1084046..1086370 Listeria innocua Clip11262 1129591 NP_470402.1 CDS lin1065 NC_003212.1 1086423 1088429 R lin1065; hypothetical protein complement(1086423..1088429) Listeria innocua Clip11262 1129592 NP_470403.1 CDS lin1066 NC_003212.1 1088674 1089663 D similar to dolichol phosphate mannose synthase; hypothetical protein 1088674..1089663 Listeria innocua Clip11262 1129593 NP_470404.1 CDS lin1067 NC_003212.1 1089669 1091759 D lin1067; hypothetical protein 1089669..1091759 Listeria innocua Clip11262 1129594 NP_470405.1 CDS lin1068 NC_003212.1 1091847 1094171 D similar to hypothetical protein 3 (capsulation locus) of Haemophilus influenzae; hypothetical protein 1091847..1094171 Listeria innocua Clip11262 1129595 NP_470406.1 CDS lin1069 NC_003212.1 1094168 1095178 D lin1069; hypothetical protein 1094168..1095178 Listeria innocua Clip11262 1129597 NP_470407.1 CDS lin1070 NC_003212.1 1095229 1096116 R similar to putative UDP-glucose pyrophosphorylases; hypothetical protein complement(1095229..1096116) Listeria innocua Clip11262 1129598 NP_470408.1 CDS ispD NC_003212.1 1096342 1097055 D similar to CDP-ribitol pyrophosphorylase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1096342..1097055 Listeria innocua Clip11262 1129599 NP_470409.1 CDS lin1072 NC_003212.1 1097048 1098073 D similar to glucitol dehydrogenase; hypothetical protein 1097048..1098073 Listeria innocua Clip11262 1129600 NP_470410.1 CDS lin1073 NC_003212.1 1098214 1099602 D similar to galactosamine-containing minor teichoic acid biosynthesis protein GgaA; hypothetical protein 1098214..1099602 Listeria innocua Clip11262 1129601 NP_470411.1 CDS lin1074 NC_003212.1 1099602 1100756 D similar to Bacillus subtilis TagF protein (probable CDPglycerol glycerophosphotransferase); hypothetical protein 1099602..1100756 Listeria innocua Clip11262 1129603 NP_470412.1 CDS lin1075 NC_003212.1 1100769 1101920 D similar to teichoic acid biosynthesis protein B precursor; hypothetical protein 1100769..1101920 Listeria innocua Clip11262 1129604 NP_470413.1 CDS lin1076 NC_003212.1 1101985 1102368 D highly similar to glycerol-3-phosphate cytidylyltransferase (gct), CDP-glycerol pyrophosphorylase (teichoic acid biosynthesis protein D); hypothetical protein 1101985..1102368 Listeria innocua Clip11262 1129605 NP_470414.1 CDS lin1077 NC_003212.1 1102486 1103976 D conserved hypothetical protein, similar to Bacillus subtilis YueK protein; catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1102486..1103976 Listeria innocua Clip11262 1129606 NP_470415.1 CDS nadE NC_003212.1 1103988 1104812 D similar to NH(3)-dependent NAD(+) synthetases, nitrogen regulatory protein; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1103988..1104812 Listeria innocua Clip11262 1129607 NP_470416.1 CDS lin1079 NC_003212.1 1104825 1105133 D lin1079; hypothetical protein 1104825..1105133 Listeria innocua Clip11262 1129608 NP_470417.1 CDS lin1080 NC_003212.1 1105194 1105598 D similar to PTS system, cellobiose-specific IIB component (cel A); hypothetical protein 1105194..1105598 Listeria innocua Clip11262 1129609 NP_470418.1 CDS guaA NC_003212.1 1105727 1107283 D highly similar to GMP synthetase; contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1105727..1107283 Listeria innocua Clip11262 1129610 NP_470419.1 CDS lin1082 NC_003212.1 1107430 1108593 D lin1082; hypothetical protein 1107430..1108593 Listeria innocua Clip11262 1129611 NP_470420.1 CDS lin1083 NC_003212.1 1108735 1109385 D lin1083; hypothetical protein 1108735..1109385 Listeria innocua Clip11262 1129612 NP_470421.1 CDS lin1084 NC_003212.1 1109683 1109967 D lin1084; hypothetical protein 1109683..1109967 Listeria innocua Clip11262 1129613 NP_470422.1 CDS lin1085 NC_003212.1 1109968 1110324 D lin1085; hypothetical protein 1109968..1110324 Listeria innocua Clip11262 1129615 NP_470423.1 CDS lin1086 NC_003212.1 1110321 1111718 D lin1086; hypothetical protein 1110321..1111718 Listeria innocua Clip11262 1129617 NP_470424.1 CDS lin1087 NC_003212.1 1111731 1112150 D lin1087; hypothetical protein 1111731..1112150 Listeria innocua Clip11262 1129618 NP_470425.1 CDS lin1088 NC_003212.1 1112236 1112709 D lin1088; hypothetical protein 1112236..1112709 Listeria innocua Clip11262 1129619 NP_470426.1 CDS lin1089 NC_003212.1 1112699 1113136 D lin1089; hypothetical protein 1112699..1113136 Listeria innocua Clip11262 1129621 NP_470427.1 CDS lin1090 NC_003212.1 1113540 1113875 D lin1090; hypothetical protein 1113540..1113875 Listeria innocua Clip11262 1129622 NP_470428.1 CDS lin1091 NC_003212.1 1114077 1114379 D lin1091; hypothetical protein 1114077..1114379 Listeria innocua Clip11262 1129623 NP_470429.1 CDS lin1092 NC_003212.1 1114550 1115002 D similar to Escherichia coli YjaB protein; hypothetical protein 1114550..1115002 Listeria innocua Clip11262 1129624 NP_470430.1 CDS lin1093 NC_003212.1 1114992 1115447 D lin1093; hypothetical protein 1114992..1115447 Listeria innocua Clip11262 1129626 NP_470431.1 CDS lin1094 NC_003212.1 1115461 1116483 R lin1094; hypothetical protein complement(1115461..1116483) Listeria innocua Clip11262 1129627 NP_470432.1 CDS lin1095 NC_003212.1 1116456 1117052 R hypothetical protein complement(1116456..1117052) Listeria innocua Clip11262 1129628 NP_470433.1 CDS lin1096 NC_003212.1 1117049 1117768 R similar to transcription regulators; hypothetical protein complement(1117049..1117768) Listeria innocua Clip11262 1129629 NP_470434.1 CDS lin1097 NC_003212.1 1118018 1119733 D similar to ABC transporters, ATP-binding proteins; hypothetical protein 1118018..1119733 Listeria innocua Clip11262 1129631 NP_470435.1 CDS lin1098 NC_003212.1 1119735 1121381 D similar to ABC transporters, ATP-binding proteins; hypothetical protein 1119735..1121381 Listeria innocua Clip11262 1129633 NP_470436.1 CDS lin1099 NC_003212.1 1121593 1122300 R lin1099; hypothetical protein complement(1121593..1122300) Listeria innocua Clip11262 1129634 NP_470437.1 CDS lin1100 NC_003212.1 1122290 1122760 D lin1100; hypothetical protein 1122290..1122760 Listeria innocua Clip11262 1129636 NP_470438.1 CDS lin1101 NC_003212.1 1123071 1124624 D similar to internalin, putative peptidoglycan bound protein (LPXTG motif); hypothetical protein 1123071..1124624 Listeria innocua Clip11262 1129638 NP_470439.1 CDS lin1102 NC_003212.1 1124658 1125005 R lin1102; hypothetical protein complement(1124658..1125005) Listeria innocua Clip11262 1129639 NP_470440.1 CDS lin1103 NC_003212.1 1125070 1125642 R similar to ATP-dependent Clp protease proteolytic component; hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(1125070..1125642) Listeria innocua Clip11262 1129640 NP_470441.1 CDS lin1104 NC_003212.1 1125770 1126177 R lin1104; hypothetical protein complement(1125770..1126177) Listeria innocua Clip11262 1129641 NP_470442.1 CDS lin1105 NC_003212.1 1126269 1126748 D similar to uroporphyrin-III C-methyltransferase; hypothetical protein 1126269..1126748 Listeria innocua Clip11262 1129642 NP_470443.1 CDS lin1106 NC_003212.1 1126867 1128231 D similar to Salmonella enterica PduS protein; hypothetical protein 1126867..1128231 Listeria innocua Clip11262 1129643 NP_470444.1 CDS lin1107 NC_003212.1 1128228 1128782 D similar to Salmonella enterica PduT protein; hypothetical protein 1128228..1128782 Listeria innocua Clip11262 1129645 NP_470445.1 CDS lin1108 NC_003212.1 1128930 1129280 D similar to Salmonelle enterica PduU protein; hypothetical protein 1128930..1129280 Listeria innocua Clip11262 1129646 NP_470446.1 CDS lin1109 NC_003212.1 1129286 1129717 D similar to Salmonella enterica PduV protein; hypothetical protein 1129286..1129717 Listeria innocua Clip11262 1129648 NP_470447.1 CDS lin1110 NC_003212.1 1129742 1130485 D lin1110; hypothetical protein 1129742..1130485 Listeria innocua Clip11262 1129649 NP_470448.1 CDS lin1111 NC_003212.1 1130478 1131035 D similar to bifunctional cobalamin biosynthesis protein CopB, (cobinamide kinase; cobinamide phosphatase guanylyltransferase); hypothetical protein 1130478..1131035 Listeria innocua Clip11262 1129651 NP_470449.1 CDS lin1112 NC_003212.1 1131037 1131783 D highly similar to cobalamin (5'-phosphatase) synthetase; hypothetical protein 1131037..1131783 Listeria innocua Clip11262 1129653 NP_470450.1 CDS lin1113 NC_003212.1 1131784 1132359 D similar to alpha-ribazole-5'-phosphatase; hypothetical protein 1131784..1132359 Listeria innocua Clip11262 1129654 NP_470451.1 CDS lin1114 NC_003212.1 1132770 1133654 R transcriptional regulator PocR complement(1132770..1133654) Listeria innocua Clip11262 1129655 NP_470452.1 CDS lin1115 NC_003212.1 1133956 1134243 D similar to Salmonella typhimurium PduA protein; hypothetical protein 1133956..1134243 Listeria innocua Clip11262 1129656 NP_470453.1 CDS lin1116 NC_003212.1 1134236 1135039 D similar to Salmonella typhimurium PduB protein; hypothetical protein 1134236..1135039 Listeria innocua Clip11262 1129658 NP_470454.1 CDS lin1117 NC_003212.1 1135058 1136722 D highly similar to propanediol dehydratase, alpha subunit; hypothetical protein 1135058..1136722 Listeria innocua Clip11262 1129659 NP_470455.1 CDS lin1118 NC_003212.1 1136760 1137419 D similar to diol dehydrase (diol dehydratase) gamma subunit; hypothetical protein 1136760..1137419 Listeria innocua Clip11262 1129660 NP_470456.1 CDS lin1119 NC_003212.1 1137436 1137948 D similar to diol dehydrase (diol dehydratase) gamma subunit (pddC); hypothetical protein 1137436..1137948 Listeria innocua Clip11262 1129661 NP_470457.1 CDS lin1120 NC_003212.1 1137993 1139813 D similar to diol dehydratase-reactivating factor large subunit; hypothetical protein 1137993..1139813 Listeria innocua Clip11262 1129662 NP_470458.1 CDS lin1121 NC_003212.1 1139810 1140157 D similar to diol dehydratase-reactivating factor small chain; hypothetical protein 1139810..1140157 Listeria innocua Clip11262 1129664 NP_470459.1 CDS lin1122 NC_003212.1 1140170 1140607 D similar to Salmonella enterica PduK protein; hypothetical protein 1140170..1140607 Listeria innocua Clip11262 1129665 NP_470460.1 CDS lin1123 NC_003212.1 1140633 1140908 D similar to carboxysome structural protein; hypothetical protein 1140633..1140908 Listeria innocua Clip11262 1129666 NP_470461.1 CDS lin1124 NC_003212.1 1140912 1141547 D similar to Salmonella enterica PduL protein; hypothetical protein 1140912..1141547 Listeria innocua Clip11262 1129668 NP_470462.1 CDS lin1125 NC_003212.1 1141568 1142407 D similar to ethanolamine utilization protein EutJ; hypothetical protein 1141568..1142407 Listeria innocua Clip11262 1129669 NP_470463.1 CDS lin1126 NC_003212.1 1142404 1142883 D lin1126; hypothetical protein 1142404..1142883 Listeria innocua Clip11262 1129671 NP_470464.1 CDS lin1127 NC_003212.1 1142888 1143151 D similar to carbon dioxide concentrating mechanism protein; hypothetical protein 1142888..1143151 Listeria innocua Clip11262 1129673 NP_470465.1 CDS lin1128 NC_003212.1 1143166 1144161 D ATP:cob(I)alamin adenosyltransferase protein PduO 1143166..1144161 Listeria innocua Clip11262 1129674 NP_470466.1 CDS lin1129 NC_003212.1 1144168 1145577 D similar to ethanolamine utilization protein EutE; hypothetical protein 1144168..1145577 Listeria innocua Clip11262 1129676 NP_470467.1 CDS lin1130 NC_003212.1 1145593 1146711 D similar to NADPH-dependent butanol dehydrogenase; hypothetical protein 1145593..1146711 Listeria innocua Clip11262 1129677 NP_470468.1 CDS lin1131 NC_003212.1 1146739 1147443 D similar to glycerol uptake facilitator protein; hypothetical protein 1146739..1147443 Listeria innocua Clip11262 1129678 NP_470469.1 CDS lin1132 NC_003212.1 1147511 1148704 D similar to acetate kinase; hypothetical protein 1147511..1148704 Listeria innocua Clip11262 1129679 NP_470470.1 CDS lin1133 NC_003212.1 1148718 1149803 D similar to Salmonella typhimurium CobD protein and to histidinol-phosphate aminotransferase; cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 1148718..1149803 Listeria innocua Clip11262 1129680 NP_470471.1 CDS lin1134 NC_003212.1 1149793 1150668 D similar to Salmonella enterica PduX protein; hypothetical protein 1149793..1150668 Listeria innocua Clip11262 1129682 NP_470472.1 CDS lin1135 NC_003212.1 1151259 1152398 D similar to NADPH-dependent butanol dehydrogenase; hypothetical protein 1151259..1152398 Listeria innocua Clip11262 1129683 NP_470473.1 CDS lin1136 NC_003212.1 1152673 1153254 D similar to similar to two-component response regulator; hypothetical protein 1152673..1153254 Listeria innocua Clip11262 1129684 NP_470474.1 CDS lin1137 NC_003212.1 1153247 1154704 D similar to two-component sensor histidine kinase; hypothetical protein 1153247..1154704 Listeria innocua Clip11262 1129686 NP_470475.1 CDS eutA NC_003212.1 1154795 1156216 D similar to ethanolamine utilization protein EutA (putative chaperonin); reactivating factor for ethanolamine ammonia lyase 1154795..1156216 Listeria innocua Clip11262 1129687 NP_470476.1 CDS lin1139 NC_003212.1 1156258 1157622 D similar to ethanolamine ammonia-lyase, heavy chain; hypothetical protein 1156258..1157622 Listeria innocua Clip11262 1129688 NP_470477.1 CDS lin1140 NC_003212.1 1157642 1158523 D similar to ethanolamine ammonia-lyase, light chain; catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 1157642..1158523 Listeria innocua Clip11262 1129689 NP_470478.1 CDS lin1141 NC_003212.1 1158546 1159199 D similar to putative carboxysome structural protein (eutL); hypothetical protein 1158546..1159199 Listeria innocua Clip11262 1129690 NP_470479.1 CDS lin1142 NC_003212.1 1159214 1159711 D similar to putative carboxysome structural protein; hypothetical protein 1159214..1159711 Listeria innocua Clip11262 1129691 NP_470480.1 CDS lin1143 NC_003212.1 1159711 1161171 D similar to acetaldehyde dehydrogenase / alcohol dehydrogenase; hypothetical protein 1159711..1161171 Listeria innocua Clip11262 1129693 NP_470481.1 CDS lin1144 NC_003212.1 1161203 1161487 D similar to putative carboxysome structural protein; hypothetical protein 1161203..1161487 Listeria innocua Clip11262 1129694 NP_470482.1 CDS lin1145 NC_003212.1 1161653 1162408 D similar to cobalamin adenosyl transferase; hypothetical protein 1161653..1162408 Listeria innocua Clip11262 1129695 NP_470483.1 CDS lin1146 NC_003212.1 1162421 1163062 D similar to Salmonella enterica PduL protein; hypothetical protein 1162421..1163062 Listeria innocua Clip11262 1129696 NP_470484.1 CDS lin1147 NC_003212.1 1163107 1163631 D lin1147; hypothetical protein 1163107..1163631 Listeria innocua Clip11262 1129697 NP_470485.1 CDS lin1148 NC_003212.1 1163646 1163915 D similar to carbon dioxide concentrating mechanism protein; hypothetical protein 1163646..1163915 Listeria innocua Clip11262 1129698 NP_470486.1 CDS lin1149 NC_003212.1 1163908 1164453 D similar to Salmonella enterica PduT protein; hypothetical protein 1163908..1164453 Listeria innocua Clip11262 1129699 NP_470487.1 CDS lin1150 NC_003212.1 1164469 1165590 D similar to ethanolamine utilization protein EutH - Escherichia coli; hypothetical protein 1164469..1165590 Listeria innocua Clip11262 1129700 NP_470488.1 CDS lin1151 NC_003212.1 1165583 1166029 D similar to ethanolamine utilization protein EutQ; hypothetical protein 1165583..1166029 Listeria innocua Clip11262 1129701 NP_470489.1 CDS lin1152 NC_003212.1 1166072 1166623 R similar to transcriptional regulator; hypothetical protein complement(1166072..1166623) Listeria innocua Clip11262 1129702 NP_470490.1 CDS lin1153 NC_003212.1 1166937 1167431 D lin1153; hypothetical protein 1166937..1167431 Listeria innocua Clip11262 1129703 NP_470491.1 CDS lin1154 NC_003212.1 1167763 1169121 D similar to cobyrinic acid a,c-diamide synthase; responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 1167763..1169121 Listeria innocua Clip11262 1129704 NP_470492.1 CDS cobD NC_003212.1 1169118 1170065 D similar to cobalamine synthesis protein CbiB; CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 1169118..1170065 Listeria innocua Clip11262 1129706 NP_470493.1 CDS cbiC NC_003212.1 1170078 1170710 D similar to precorrin isomerase; catalyzes the interconversion of cobalt-precorrin-8X and cobyrinic acid in the anaerobic biosynthesis of cobalamin; cobalt-precorrin-8X methylmutase 1170078..1170710 Listeria innocua Clip11262 1129707 NP_470494.1 CDS cbiD NC_003212.1 1170726 1171847 D similar to cobalamin biosynthesis protein CbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 1170726..1171847 Listeria innocua Clip11262 1129708 NP_470495.1 CDS lin1158 NC_003212.1 1171844 1172440 D similar to precorrin methylase; catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a; cobalt-precorrin-6Y C(5)-methyltransferase 1171844..1172440 Listeria innocua Clip11262 1129709 NP_470496.1 CDS lin1159 NC_003212.1 1172430 1172999 D similar to precorrin decarbocylase; catalyzes the methylation of either C-15 or C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W; decarboxylating; cobalt-precorrin-6Y C(15)-methyltransferase 1172430..1172999 Listeria innocua Clip11262 1129710 NP_470497.1 CDS lin1160 NC_003212.1 1173005 1173754 D similar to precorrin-3 methylase; hypothetical protein 1173005..1173754 Listeria innocua Clip11262 1129711 NP_470498.1 CDS lin1161 NC_003212.1 1173741 1174772 D similar to cobalamin biosynthesis protein G CbiG; catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3; cobalamin biosynthesis protein CbiG 1173741..1174772 Listeria innocua Clip11262 1129713 NP_470499.1 CDS lin1162 NC_003212.1 1174769 1175494 D similar to precorrin methylase; catalyzes the formation of precorrin-4 from precorrin-3B and S-adenosyl-L-methionine; precorrin-3B C17-methyltransferase 1174769..1175494 Listeria innocua Clip11262 1129714 NP_470500.1 CDS lin1163 NC_003212.1 1175491 1176243 D similar to cobalamin biosynthesis J protein CbiJ; hypothetical protein 1175491..1176243 Listeria innocua Clip11262 1129715 NP_470501.1 CDS lin1164 NC_003212.1 1176243 1177724 D similar uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; hypothetical protein 1176243..1177724 Listeria innocua Clip11262 1129717 NP_470502.1 CDS lin1165 NC_003212.1 1177721 1178506 D similar to anaerobic Cobalt Chelatase In Cobalamin Biosynthesis; hypothetical protein 1177721..1178506 Listeria innocua Clip11262 1129718 NP_470503.1 CDS lin1166 NC_003212.1 1178499 1179209 D similar to S-adenosyl-methionine: precorrin-2 methyltransferase; catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase 1178499..1179209 Listeria innocua Clip11262 1129719 NP_470504.2 CDS lin1167 NC_003212.1 1179290 1179940 D similar to cobalamin biosynthesis protein M; catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM 1179290..1179940 Listeria innocua Clip11262 1129721 NP_470505.1 CDS lin1168 NC_003212.1 1179937 1180233 D similar to putative cobalt transport protein CbiN; periplasmic cobalt binding component of the cobalt transport system; cobalt transport protein CbiN 1179937..1180233 Listeria innocua Clip11262 1129723 NP_470506.1 CDS lin1169 NC_003212.1 1180220 1180897 D similar to cobalt transport protein Q; hypothetical protein 1180220..1180897 Listeria innocua Clip11262 1129724 NP_470507.1 CDS lin1170 NC_003212.1 1180910 1181716 D similar to cobalt transport ATP-binding protein CbiO; hypothetical protein 1180910..1181716 Listeria innocua Clip11262 1129725 NP_470508.1 CDS lin1171 NC_003212.1 1181716 1183251 D similar to cobyric acid synthase CbiP; catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1181716..1183251 Listeria innocua Clip11262 1129727 NP_470509.1 CDS lin1172 NC_003212.1 1183215 1183781 D hypothetical protein 1183215..1183781 Listeria innocua Clip11262 1129728 NP_470510.1 CDS lin1173 NC_003212.1 1183825 1184292 R hypothetical protein complement(1183825..1184292) Listeria innocua Clip11262 1129729 NP_470511.1 CDS lin1174 NC_003212.1 1184307 1184756 R hypothetical protein complement(1184307..1184756) Listeria innocua Clip11262 1129730 NP_470512.1 CDS lin1175 NC_003212.1 1184845 1185375 D hypothetical protein 1184845..1185375 Listeria innocua Clip11262 1129731 NP_470513.1 CDS lin1176 NC_003212.1 1185406 1185717 D hypothetical protein 1185406..1185717 Listeria innocua Clip11262 1129732 NP_470514.1 CDS lin1177 NC_003212.1 1185720 1186268 D lin1177; hypothetical protein 1185720..1186268 Listeria innocua Clip11262 1129734 NP_470515.1 CDS lin1178 NC_003212.1 1186568 1187437 D similar to N-acetylmuramoyl-L-alanine amidase (autolysin); hypothetical protein 1186568..1187437 Listeria innocua Clip11262 1129735 NP_470516.1 CDS lin1179 NC_003212.1 1187734 1188720 D similar to N-acetylmuramoyl-L-alanine amidase (autolysin); hypothetical protein 1187734..1188720 Listeria innocua Clip11262 1129736 NP_470517.1 CDS lin1180 NC_003212.1 1188832 1189911 D similar to endo-1,4-beta-glucanase and to aminopeptidase; hypothetical protein 1188832..1189911 Listeria innocua Clip11262 1129737 NP_470518.1 CDS lin1181 NC_003212.1 1189937 1190695 D similar to rRNA methylase; hypothetical protein 1189937..1190695 Listeria innocua Clip11262 1129738 NP_470519.1 CDS lin1182 NC_003212.1 1190739 1191098 R lin1182; hypothetical protein complement(1190739..1191098) Listeria innocua Clip11262 1129739 NP_470520.1 CDS lin1183 NC_003212.1 1191255 1191578 D hypothetical protein 1191255..1191578 Listeria innocua Clip11262 1129740 NP_470521.1 CDS pheS NC_003212.1 1191944 1192996 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1191944..1192996 Listeria innocua Clip11262 1129741 NP_470522.1 CDS pheT NC_003212.1 1192996 1195404 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1192996..1195404 Listeria innocua Clip11262 1129742 NP_470523.1 CDS lin1186 NC_003212.1 1195559 1196260 D similar to ABC transporter, ATP-binding proteins; hypothetical protein 1195559..1196260 Listeria innocua Clip11262 1129743 NP_470524.1 CDS lin1187 NC_003212.1 1196274 1199684 D similar to different proteins; hypothetical protein 1196274..1199684 Listeria innocua Clip11262 1129744 NP_470525.1 CDS lin1188 NC_003212.1 1199781 1200233 D similar to transcriptional regulator (MarR family).; hypothetical protein 1199781..1200233 Listeria innocua Clip11262 1129745 NP_470526.1 CDS lin1189 NC_003212.1 1200249 1203449 D similar to transporter, (to Bacillus subtilis YdgH protein); hypothetical protein 1200249..1203449 Listeria innocua Clip11262 1129746 NP_470527.1 CDS lin1190 NC_003212.1 1203555 1204229 D similar to uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 1203555..1204229 Listeria innocua Clip11262 1129747 NP_470528.1 CDS lin1191 NC_003212.1 1204267 1205193 R similar to Bacillus subtilis ribonuclease HIII; An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease HIII complement(1204267..1205193) Listeria innocua Clip11262 1129748 NP_470529.1 CDS lin1192 NC_003212.1 1205347 1205610 D similar to Bacillus subtilis YshA protein; hypothetical protein 1205347..1205610 Listeria innocua Clip11262 1129749 NP_470530.1 CDS lin1193 NC_003212.1 1205610 1206152 D similar to Bacillus subtilis YshB protein; hypothetical protein 1205610..1206152 Listeria innocua Clip11262 1129751 NP_470531.1 CDS lin1194 NC_003212.1 1206245 1207957 D similar to DNA polymerase beta, to Bacillus subtilis YshC protein; hypothetical protein 1206245..1207957 Listeria innocua Clip11262 1129752 NP_470532.1 CDS lin1195 NC_003212.1 1207980 1210337 D similar to MutS protein (MutS2); MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein 1207980..1210337 Listeria innocua Clip11262 1129753 NP_470533.1 CDS trxA NC_003212.1 1210418 1210729 D thioredoxin 1210418..1210729 Listeria innocua Clip11262 1129754 NP_470534.1 CDS uvrC NC_003212.1 1210805 1212616 D highly similar to excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1210805..1212616 Listeria innocua Clip11262 1129755 NP_470535.1 CDS lin1198 NC_003212.1 1212799 1214013 D similar to aspartokinase II alpha subunit; catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation; aspartate kinase 1212799..1214013 Listeria innocua Clip11262 1129756 NP_470536.1 CDS lin1199 NC_003212.1 1214085 1214570 R similar to Bacillus subtilis YslB protein; hypothetical protein complement(1214085..1214570) Listeria innocua Clip11262 1129757 NP_470537.1 CDS lin1200 NC_003212.1 1214728 1215528 D similar to glutamate racemase; converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 1214728..1215528 Listeria innocua Clip11262 1129758 NP_470538.1 CDS rph NC_003212.1 1215541 1216287 D similar to ribonuclease PH; RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 1215541..1216287 Listeria innocua Clip11262 1129759 NP_470539.1 CDS lin1202 NC_003212.1 1216291 1216902 D Nucleoside-triphosphatase; hydrolyzes non-standard nucleotides such as xanthine and inosine; nucleoside-triphosphatase 1216291..1216902 Listeria innocua Clip11262 1129761 NP_470540.1 CDS lin1203 NC_003212.1 1216940 1217464 D conserved hypothetical protein, similar to Bacillus subtilis YsnB protein; hypothetical protein 1216940..1217464 Listeria innocua Clip11262 1129762 NP_470541.1 CDS lin1204 NC_003212.1 1218927 1222640 D similar to internalin proteins (LPXTG motif); hypothetical protein 1218927..1222640 Listeria innocua Clip11262 1129763 NP_470542.1 CDS lin1205 NC_003212.1 1222883 1224241 D lin1205; hypothetical protein 1222883..1224241 Listeria innocua Clip11262 1129764 NP_470543.1 CDS lin1206 NC_003212.1 1224283 1224876 R similar to Bacillus subtilis YdeI protein; hypothetical protein complement(1224283..1224876) Listeria innocua Clip11262 1129765 NP_470544.1 CDS lin1207 NC_003212.1 1224994 1225401 R lin1207; hypothetical protein complement(1224994..1225401) Listeria innocua Clip11262 1129766 NP_470545.1 CDS lin1208 NC_003212.1 1225566 1226165 D weakly similar to phosphoglycerate mutase 1; hypothetical protein 1225566..1226165 Listeria innocua Clip11262 1129767 NP_470546.1 CDS lin1209 NC_003212.1 1226361 1226723 D lin1209; hypothetical protein 1226361..1226723 Listeria innocua Clip11262 1129768 NP_470547.1 CDS lin1210 NC_003212.1 1226716 1226991 D lin1210; hypothetical protein 1226716..1226991 Listeria innocua Clip11262 1129770 NP_470548.1 CDS lin1211 NC_003212.1 1226999 1228459 D lin1211; hypothetical protein 1226999..1228459 Listeria innocua Clip11262 1129771 NP_470549.1 CDS lin1212 NC_003212.1 1228896 1229450 D lin1212; hypothetical protein 1228896..1229450 Listeria innocua Clip11262 1129772 NP_470550.1 CDS lin1213 NC_003212.1 1229498 1229758 R lin1213; hypothetical protein complement(1229498..1229758) Listeria innocua Clip11262 1129773 NP_470551.1 CDS lin1214 NC_003212.1 1229882 1231294 D similar to ATP-dependent RNA helicase (DEAD motif); hypothetical protein 1229882..1231294 Listeria innocua Clip11262 1129774 NP_470552.1 CDS lin1215 NC_003212.1 1231748 1232224 D weakly similar to 8-oxo-dGTPase (mutT); hypothetical protein 1231748..1232224 Listeria innocua Clip11262 1129775 NP_470553.1 CDS lin1216 NC_003212.1 1232261 1232506 R lin1216; hypothetical protein complement(1232261..1232506) Listeria innocua Clip11262 1129776 NP_470554.1 CDS lin1217 NC_003212.1 1232503 1233708 R similar to antibiotic resistance protein; hypothetical protein complement(1232503..1233708) Listeria innocua Clip11262 1129777 NP_470555.1 CDS lin1218 NC_003212.1 1233906 1234565 D similar to regulator of the Fnr CRP family (including PrfA); hypothetical protein 1233906..1234565 Listeria innocua Clip11262 1129778 NP_470556.1 CDS lin1219 NC_003212.1 1234873 1235718 R similar to Bacillus subtilis YxkD protein; hypothetical protein complement(1234873..1235718) Listeria innocua Clip11262 1129779 NP_470557.1 CDS lin1220 NC_003212.1 1236047 1236184 R lin1220; hypothetical protein complement(1236047..1236184) Listeria innocua Clip11262 1129780 NP_470558.1 CDS lin1221 NC_003212.1 1236335 1237048 D similar to transcription regulator GntR family; hypothetical protein 1236335..1237048 Listeria innocua Clip11262 1129781 NP_470559.1 CDS lin1222 NC_003212.1 1237078 1238724 R similar to alpha,alpha-phosphotrehalase; hypothetical protein complement(1237078..1238724) Listeria innocua Clip11262 1129782 NP_470560.1 CDS lin1223 NC_003212.1 1238743 1240227 R similar to PTS system trehalose specific enzyme IIBC; hypothetical protein complement(1238743..1240227) Listeria innocua Clip11262 1129783 NP_470561.1 CDS lin1224 NC_003212.1 1240343 1240795 D lin1224; hypothetical protein 1240343..1240795 Listeria innocua Clip11262 1129784 NP_470562.1 CDS lin1225 NC_003212.1 1240842 1241306 R lin1225; hypothetical protein complement(1240842..1241306) Listeria innocua Clip11262 1129785 NP_470563.1 CDS lin1226 NC_003212.1 1241495 1242415 D lin1226; hypothetical protein 1241495..1242415 Listeria innocua Clip11262 1129786 NP_470564.1 CDS proA NC_003212.1 1242435 1243682 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(1242435..1243682) Listeria innocua Clip11262 1129787 NP_470565.1 CDS proB NC_003212.1 1243666 1244496 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(1243666..1244496) Listeria innocua Clip11262 1129788 NP_470566.1 CDS lin1229 NC_003212.1 1244632 1245771 R lin1229; hypothetical protein complement(1244632..1245771) Listeria innocua Clip11262 1129790 NP_470567.1 CDS lin1230 NC_003212.1 1245851 1246246 R similar to transcriptional regulator (phage-related); hypothetical protein complement(1245851..1246246) Listeria innocua Clip11262 1129791 NP_470568.1 CDS lin1231 NC_003212.1 1246563 1247978 R similar to site-specific recombinase for integration and excision [bacteriophage phi-105]; hypothetical protein complement(1246563..1247978) Listeria innocua Clip11262 1129792 NP_470569.1 CDS lin1232 NC_003212.1 1248055 1248726 R hypothetical protein complement(1248055..1248726) Listeria innocua Clip11262 1129793 NP_470570.1 CDS lin1233 NC_003212.1 1248769 1249188 R similar to bacteriophage phi-105 ORF2 protein; hypothetical protein complement(1248769..1249188) Listeria innocua Clip11262 1129794 NP_470571.1 CDS lin1234 NC_003212.1 1249205 1249633 R similar to immunity repressor [bacteriophage phi-105]; hypothetical protein complement(1249205..1249633) Listeria innocua Clip11262 1129795 NP_470572.1 CDS lin1235 NC_003212.1 1249793 1249978 D similar to transcription regulator; hypothetical protein 1249793..1249978 Listeria innocua Clip11262 1129796 NP_470573.1 CDS lin1236 NC_003212.1 1250055 1250579 D lin1236; hypothetical protein 1250055..1250579 Listeria innocua Clip11262 1129797 NP_470574.1 CDS lin1237 NC_003212.1 1250592 1250750 D lin1237; hypothetical protein 1250592..1250750 Listeria innocua Clip11262 1129798 NP_470575.1 CDS lin1238 NC_003212.1 1250744 1250908 D lin1238; hypothetical protein 1250744..1250908 Listeria innocua Clip11262 1129800 NP_470576.1 CDS lin1239 NC_003212.1 1251058 1251342 D lin1239; hypothetical protein 1251058..1251342 Listeria innocua Clip11262 1129801 NP_470577.1 CDS lin1240 NC_003212.1 1251765 1252106 D lin1240; hypothetical protein 1251765..1252106 Listeria innocua Clip11262 1129802 NP_470578.1 CDS lin1241 NC_003212.1 1252093 1254033 D similar to bacteriophage protein; hypothetical protein 1252093..1254033 Listeria innocua Clip11262 1129804 NP_470579.1 CDS lin1242 NC_003212.1 1254037 1254819 D some similarities to phage related proteins; hypothetical protein 1254037..1254819 Listeria innocua Clip11262 1129806 NP_470580.1 CDS lin1243 NC_003212.1 1254758 1255516 D similar to hypothetical protein 44 - Staphylococcus aureus phage phi PVL; hypothetical protein 1254758..1255516 Listeria innocua Clip11262 1129807 NP_470581.1 CDS lin1244 NC_003212.1 1255528 1256445 D lin1244; hypothetical protein 1255528..1256445 Listeria innocua Clip11262 1129808 NP_470582.1 CDS lin1245 NC_003212.1 1256321 1257184 D similarities Staphylococcus aureus prophage phiPV83; hypothetical protein 1256321..1257184 Listeria innocua Clip11262 1129810 NP_470583.1 CDS lin1246 NC_003212.1 1257362 1257589 D lin1246; hypothetical protein 1257362..1257589 Listeria innocua Clip11262 1129811 NP_470584.1 CDS lin1247 NC_003212.1 1257546 1257785 D lin1247; hypothetical protein 1257546..1257785 Listeria innocua Clip11262 1129813 NP_470585.1 CDS lin1248 NC_003212.1 1257766 1258203 D similar to hypothetical protein, Staphylococcus aureus phage phi PVL; hypothetical protein 1257766..1258203 Listeria innocua Clip11262 1129815 NP_470586.1 CDS lin1249 NC_003212.1 1258225 1258845 D lin1249; hypothetical protein 1258225..1258845 Listeria innocua Clip11262 1129816 NP_470587.1 CDS lin1250 NC_003212.1 1258886 1259263 D lin1250; hypothetical protein 1258886..1259263 Listeria innocua Clip11262 1129817 NP_470588.1 CDS lin1251 NC_003212.1 1259223 1259399 D lin1251; hypothetical protein 1259223..1259399 Listeria innocua Clip11262 1129819 NP_470589.1 CDS lin1252 NC_003212.1 1259411 1259833 D lin1252; hypothetical protein 1259411..1259833 Listeria innocua Clip11262 1129820 NP_470590.1 CDS lin1253 NC_003212.1 1259830 1261191 D lin1253; hypothetical protein 1259830..1261191 Listeria innocua Clip11262 1129821 NP_470591.1 CDS lin1254 NC_003212.1 1261428 1262372 D similar to phage intagrase proteins; hypothetical protein 1261428..1262372 Listeria innocua Clip11262 1129822 NP_470592.1 CDS lin1255 NC_003212.1 1262385 1263065 D lin1255; hypothetical protein 1262385..1263065 Listeria innocua Clip11262 1129823 NP_470593.1 CDS lin1256 NC_003212.1 1263062 1263355 D lin1256; hypothetical protein 1263062..1263355 Listeria innocua Clip11262 1129825 NP_470594.1 CDS lin1257 NC_003212.1 1263766 1264293 R lin1257; hypothetical protein complement(1263766..1264293) Listeria innocua Clip11262 1129826 NP_470595.1 CDS lin1258 NC_003212.1 1264368 1264922 D lin1258; hypothetical protein 1264368..1264922 Listeria innocua Clip11262 1129827 NP_470596.1 CDS lin1259 NC_003212.1 1265000 1265425 D similar to protein gp66 [Bacteriophage A118]; hypothetical protein 1265000..1265425 Listeria innocua Clip11262 1129828 NP_470597.1 CDS lin1260 NC_003212.1 1265438 1266205 D similar to probable antirepressor - Bacillus subtilis phage SPBc2; hypothetical protein 1265438..1266205 Listeria innocua Clip11262 1129829 NP_470598.1 CDS lin1261 NC_003212.1 1266855 1267334 D lin1261; hypothetical protein 1266855..1267334 Listeria innocua Clip11262 1129831 NP_470599.1 CDS lin1262 NC_003212.1 1267399 1268736 D lin1262; hypothetical protein 1267399..1268736 Listeria innocua Clip11262 1129832 NP_470600.1 CDS lin1263 NC_003212.1 1268784 1268981 D lin1263; hypothetical protein 1268784..1268981 Listeria innocua Clip11262 1129833 NP_470601.1 CDS lin1264 NC_003212.1 1269111 1269341 D lin1264; hypothetical protein 1269111..1269341 Listeria innocua Clip11262 1129834 NP_470602.1 CDS lin1265 NC_003212.1 1269369 1269593 D lin1265; hypothetical protein 1269369..1269593 Listeria innocua Clip11262 1129835 NP_470603.1 CDS lin1266 NC_003212.1 1269646 1270482 D similar to phage protein; hypothetical protein 1269646..1270482 Listeria innocua Clip11262 1129836 NP_470604.1 CDS lin1267 NC_003212.1 1270469 1271803 D similar to a Bacillus subtilis PBSX phage protein; hypothetical protein 1270469..1271803 Listeria innocua Clip11262 1129838 NP_470605.1 CDS lin1268 NC_003212.1 1271793 1273367 D similar to a Bacillus subtilis PBSX phage protein; hypothetical protein 1271793..1273367 Listeria innocua Clip11262 1129840 NP_470606.1 CDS lin1269 NC_003212.1 1273354 1275102 D hypothetical protein 1273354..1275102 Listeria innocua Clip11262 1129842 NP_470607.1 CDS lin1270 NC_003212.1 1275480 1276574 D similar to a Bacillus subtilis PBSX phage protein; hypothetical protein 1275480..1276574 Listeria innocua Clip11262 1129843 NP_470608.1 CDS lin1271 NC_003212.1 1276590 1277519 D similar to a Bacillus subtilis PBSX phage protein; hypothetical protein 1276590..1277519 Listeria innocua Clip11262 1129844 NP_470609.1 CDS lin1272 NC_003212.1 1277525 1277737 D lin1272; hypothetical protein 1277525..1277737 Listeria innocua Clip11262 1129846 NP_470610.1 CDS lin1273 NC_003212.1 1277749 1278153 D hypothetical protein 1277749..1278153 Listeria innocua Clip11262 1129847 NP_470611.1 CDS lin1274 NC_003212.1 1278155 1278514 D similar to a Bacillus subtilis PBSX phage protein; hypothetical protein 1278155..1278514 Listeria innocua Clip11262 1129849 NP_470612.1 CDS lin1275 NC_003212.1 1278514 1279020 D similar to a Bacillus subtilis PBSX phage protein; hypothetical protein 1278514..1279020 Listeria innocua Clip11262 1129851 NP_470613.1 CDS lin1276 NC_003212.1 1279030 1279509 D similar to a Bacillus subtilis PBSX phage protein; hypothetical protein 1279030..1279509 Listeria innocua Clip11262 1129852 NP_470614.1 CDS lin1277 NC_003212.1 1279502 1279738 D lin1277; hypothetical protein 1279502..1279738 Listeria innocua Clip11262 1129854 NP_470615.1 CDS lin1278 NC_003212.1 1279740 1281098 D similar to a Bacillus subtilis PBSX phage protein; hypothetical protein 1279740..1281098 Listeria innocua Clip11262 1129856 NP_470616.1 CDS lin1279 NC_003212.1 1281100 1281546 D similar to a Bacillus subtilis PBSX phage protein; hypothetical protein 1281100..1281546 Listeria innocua Clip11262 1129858 NP_470617.1 CDS lin1280 NC_003212.1 1281621 1282109 D similar to a Bacillus subtilis PBSX phage protein; hypothetical protein 1281621..1282109 Listeria innocua Clip11262 1129859 NP_470618.1 CDS lin1282 NC_003212.1 1282298 1286263 D similar to phage proteins; hypothetical protein 1282298..1286263 Listeria innocua Clip11262 1129861 NP_470619.1 CDS lin1283 NC_003212.1 1286256 1286939 D similar to a Bacillus subtilis PBSX prophage protein; hypothetical protein 1286256..1286939 Listeria innocua Clip11262 1129863 NP_470620.1 CDS lin1284 NC_003212.1 1286950 1287927 D similar to a Bacillus subtilis PBSX prophage protein; hypothetical protein 1286950..1287927 Listeria innocua Clip11262 1129864 NP_470621.1 CDS lin1285 NC_003212.1 1287927 1288181 D similar to a Bacillus subtilis PBSX prophage protein; hypothetical protein 1287927..1288181 Listeria innocua Clip11262 1129866 NP_470622.1 CDS lin1286 NC_003212.1 1288196 1288603 D similar to a Bacillus subtilis PBSX prophage protein; hypothetical protein 1288196..1288603 Listeria innocua Clip11262 1129867 NP_470623.1 CDS lin1287 NC_003212.1 1288604 1289689 D similar to a Bacillus subtilis PBSX prophage protein; hypothetical protein 1288604..1289689 Listeria innocua Clip11262 1129869 NP_470624.1 CDS lin1288 NC_003212.1 1289700 1290269 D similar to a Bacillus subtilis PBSX prophage protein; hypothetical protein 1289700..1290269 Listeria innocua Clip11262 1129870 NP_470625.1 CDS lin1289 NC_003212.1 1290266 1290535 D hypothetical protein 1290266..1290535 Listeria innocua Clip11262 1129872 NP_470626.1 CDS lin1290 NC_003212.1 1290537 1291358 D lin1290; hypothetical protein 1290537..1291358 Listeria innocua Clip11262 1129874 NP_470627.1 CDS lin1291 NC_003212.1 1291364 1291705 D lin1291; hypothetical protein 1291364..1291705 Listeria innocua Clip11262 1129876 NP_470628.1 CDS lin1292 NC_003212.1 1291735 1291860 D lin1292; hypothetical protein 1291735..1291860 Listeria innocua Clip11262 1129877 NP_470629.1 CDS lin1293 NC_003212.1 1291891 1292337 D lin1293; hypothetical protein 1291891..1292337 Listeria innocua Clip11262 1129878 NP_470630.1 CDS lin1294 NC_003212.1 1292313 1292759 D lin1294; hypothetical protein 1292313..1292759 Listeria innocua Clip11262 1129880 NP_470631.1 CDS lin1295 NC_003212.1 1292853 1293116 D similar to holin; hypothetical protein 1292853..1293116 Listeria innocua Clip11262 1129881 NP_470632.1 CDS lin1296 NC_003212.1 1293119 1293952 D similar to hypothetical protein - phage SPP1; hypothetical protein 1293119..1293952 Listeria innocua Clip11262 1129883 NP_470633.1 CDS lin1297 NC_003212.1 1294014 1294235 R similar to Portein gp28 [Bacteriophage A118]; hypothetical protein complement(1294014..1294235) Listeria innocua Clip11262 1129884 NP_470634.1 CDS lin1298 NC_003212.1 1294263 1294466 R lin1298; hypothetical protein complement(1294263..1294466) Listeria innocua Clip11262 1129885 NP_470635.1 CDS lin1299 NC_003212.1 1294480 1294845 R lin1299; hypothetical protein complement(1294480..1294845) Listeria innocua Clip11262 1129886 NP_470636.1 CDS lin1300 NC_003212.1 1295418 1296029 D lin1300; hypothetical protein 1295418..1296029 Listeria innocua Clip11262 1129887 NP_470637.1 CDS lin1301 NC_003212.1 1296051 1296416 D lin1301; hypothetical protein 1296051..1296416 Listeria innocua Clip11262 1129888 NP_470638.1 CDS lin1302 NC_003212.1 1296787 1297008 D lin1302; hypothetical protein 1296787..1297008 Listeria innocua Clip11262 1129889 NP_470639.1 CDS lin1303 NC_003212.1 1297270 1297803 D lin1303; hypothetical protein 1297270..1297803 Listeria innocua Clip11262 1129890 NP_470640.1 CDS lin1304 NC_003212.1 1297819 1298484 D weakly similar to oligopeptide ABC transporter AppA (binding protein); hypothetical protein 1297819..1298484 Listeria innocua Clip11262 1129891 NP_470641.1 CDS lin1305 NC_003212.1 1298740 1299678 D lin1305; hypothetical protein 1298740..1299678 Listeria innocua Clip11262 1129892 NP_470642.1 CDS tig NC_003212.1 1299793 1301076 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1299793..1301076 Listeria innocua Clip11262 1129893 NP_470643.1 CDS clpX NC_003212.1 1301261 1302520 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1301261..1302520 Listeria innocua Clip11262 1129894 NP_470644.1 CDS lin1308 NC_003212.1 1302640 1303206 D similar to type-I signal peptidase; hypothetical protein 1302640..1303206 Listeria innocua Clip11262 1129895 NP_470645.1 CDS lin1309 NC_003212.1 1303242 1303811 D similar to signal peptidase I; hypothetical protein 1303242..1303811 Listeria innocua Clip11262 1129896 NP_470646.1 CDS lin1310 NC_003212.1 1303914 1304456 D similar to signal peptidase I; hypothetical protein 1303914..1304456 Listeria innocua Clip11262 1129897 NP_470647.1 CDS rbgA NC_003212.1 1304466 1305329 D conserved hypothetical protein similar to Bacillus subtilis YlqF protein; essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 1304466..1305329 Listeria innocua Clip11262 1129898 NP_470648.1 CDS rnhB NC_003212.1 1305326 1306111 D similar to ribonuclease H rnh; RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1305326..1306111 Listeria innocua Clip11262 1129900 NP_470649.1 CDS lin1313 NC_003212.1 1306246 1307106 D similar to polypeptide deformylase, similar to Bacillus subtilis Smf protein; hypothetical protein 1306246..1307106 Listeria innocua Clip11262 1129901 NP_470650.1 CDS lin1314 NC_003212.1 1307376 1309454 D highly similar to DNA topoisomerase I TopA; catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1307376..1309454 Listeria innocua Clip11262 1129902 NP_470651.1 CDS lin1315 NC_003212.1 1309518 1310822 D similar glucose inhibited division protein A; TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 1309518..1310822 Listeria innocua Clip11262 1129903 NP_470652.1 CDS lin1316 NC_003212.1 1311106 1312008 D similar to integrase/recombinase; hypothetical protein 1311106..1312008 Listeria innocua Clip11262 1129904 NP_470653.1 CDS lin1317 NC_003212.1 1312030 1312569 D highly similar to beta-type subunit of the 20S proteasome; heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 1312030..1312569 Listeria innocua Clip11262 1129905 NP_470654.1 CDS hslU NC_003212.1 1312583 1313992 D highly similar to ATP-dependent Clp protease-like proteins; heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 1312583..1313992 Listeria innocua Clip11262 1129906 NP_470655.1 CDS lin1319 NC_003212.1 1314013 1314792 D highly similar to Bacillus subtilis CodY protein; CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY 1314013..1314792 Listeria innocua Clip11262 1129907 NP_470656.1 CDS lin1320 NC_003212.1 1314946 1315314 D similar to Bacillus subtilis YneP protein; hypothetical protein 1314946..1315314 Listeria innocua Clip11262 1129908 NP_470657.1 CDS lin1321 NC_003212.1 1315337 1315648 D similar to Bacillus subtilis YneQ protein; hypothetical protein 1315337..1315648 Listeria innocua Clip11262 1129909 NP_470658.1 CDS lin1322 NC_003212.1 1315651 1316523 D similar to Lactococcus lactis LacX protein; hypothetical protein 1315651..1316523 Listeria innocua Clip11262 1129911 NP_470659.1 CDS lin1323 NC_003212.1 1316566 1317162 R conserved hypothetical protein, similar to Bacillus subtilis YneS protein; hypothetical protein complement(1316566..1317162) Listeria innocua Clip11262 1129912 NP_470660.1 CDS lin1324 NC_003212.1 1317320 1317730 D conserved hypothetical protein, similar to Bacillus subtilis YneT protein; hypothetical protein 1317320..1317730 Listeria innocua Clip11262 1129913 NP_470661.1 CDS lin1325 NC_003212.1 1317906 1319873 D highly similar to DNA gyrase-like protein (subunit B); decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1317906..1319873 Listeria innocua Clip11262 1129914 NP_470662.1 CDS lin1326 NC_003212.1 1319870 1322326 D highly similar to DNA gyrase-like protein (subunit A); decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1319870..1322326 Listeria innocua Clip11262 1129916 NP_470663.1 CDS lin1327 NC_003212.1 1322407 1322874 D S-ribosylhomocysteine lyase; catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 1322407..1322874 Listeria innocua Clip11262 1129917 NP_470664.1 CDS lin1328 NC_003212.1 1323226 1325088 D internalin-like protein 1323226..1325088 Listeria innocua Clip11262 1129918 NP_470665.1 CDS lin1329 NC_003212.1 1325196 1327097 R similar to acyltransferase (to Bacillus subtilis YrhL protein); hypothetical protein complement(1325196..1327097) Listeria innocua Clip11262 1129919 NP_470666.1 CDS lin1330 NC_003212.1 1327306 1328013 D similar to glycerophosphodiester phosphodiesterase; hypothetical protein 1327306..1328013 Listeria innocua Clip11262 1129920 NP_470667.1 CDS lin1331 NC_003212.1 1328237 1329913 D similar to glycerol 3 phosphate dehydrogenase; hypothetical protein 1328237..1329913 Listeria innocua Clip11262 1129921 NP_470668.1 CDS miaA NC_003212.1 1330038 1330955 D similar to tRNA isopentenylpyrophosphate transferase; IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1330038..1330955 Listeria innocua Clip11262 1129922 NP_470669.1 CDS lin1333 NC_003212.1 1331077 1331310 D similar to host factor-1 protein; hypothetical protein 1331077..1331310 Listeria innocua Clip11262 1129923 NP_470670.1 CDS lin1334 NC_003212.1 1331418 1332641 D conserved hypothetical protein similar to Bacillus subtilis YnbA protein; hypothetical protein 1331418..1332641 Listeria innocua Clip11262 1129924 NP_470671.1 CDS lin1335 NC_003212.1 1332634 1333860 D similar to aluminum resistance protein and to Bacillus subtilis YnbB protein (hypothetical); hypothetical protein 1332634..1333860 Listeria innocua Clip11262 1129926 NP_470672.1 CDS lin1336 NC_003212.1 1334062 1334430 D similar to glutamine synthetase repressor; hypothetical protein 1334062..1334430 Listeria innocua Clip11262 1129927 NP_470673.1 CDS lin1337 NC_003212.1 1334501 1335835 D highly similar to glutamine synthetases; hypothetical protein 1334501..1335835 Listeria innocua Clip11262 1129928 NP_470674.1 CDS lin1338 NC_003212.1 1335978 1337273 D similar to arsenic efflux pump protein; hypothetical protein 1335978..1337273 Listeria innocua Clip11262 1129929 NP_470675.1 CDS lin1339 NC_003212.1 1337307 1337828 R hypothetical protein complement(1337307..1337828) Listeria innocua Clip11262 1129930 NP_470676.1 CDS lin1340 NC_003212.1 1337858 1338472 R highly similar to SOS response regulator lexA, transcription repressor protein; Represses a number of genes involved in the response to DNA damage; LexA repressor complement(1337858..1338472) Listeria innocua Clip11262 1129931 NP_470677.1 CDS lin1341 NC_003212.1 1338630 1338959 D similar to Bacillus subtilis YneA protein; cell division suppressor protein YneA 1338630..1338959 Listeria innocua Clip11262 1129932 NP_470678.1 CDS lin1342 NC_003212.1 1339052 1339279 D similar to Bacillus subtilis YnzC protein; hypothetical protein 1339052..1339279 Listeria innocua Clip11262 1129933 NP_470679.1 CDS lin1343 NC_003212.1 1339426 1341420 D highly similar to transketolase; hypothetical protein 1339426..1341420 Listeria innocua Clip11262 1129934 NP_470680.1 CDS lin1344 NC_003212.1 1341643 1341882 D highly similar to Bacillus subtilis YneF protein; hypothetical protein 1341643..1341882 Listeria innocua Clip11262 1129935 NP_470681.1 CDS lin1345 NC_003212.1 1341933 1342664 R weakly similar to arginine N-methyltransferases; hypothetical protein complement(1341933..1342664) Listeria innocua Clip11262 1129936 NP_470682.1 CDS lin1346 NC_003212.1 1342687 1343193 R similar to Escherichia coli YbdM protein; hypothetical protein complement(1342687..1343193) Listeria innocua Clip11262 1129937 NP_470683.1 CDS lin1347 NC_003212.1 1343203 1344507 R similar to Escherichia coli YbdN protein; hypothetical protein complement(1343203..1344507) Listeria innocua Clip11262 1129938 NP_470684.1 CDS lin1348 NC_003212.1 1344497 1345696 R lin1348; hypothetical protein complement(1344497..1345696) Listeria innocua Clip11262 1129939 NP_470685.1 CDS lin1349 NC_003212.1 1345653 1346084 R lin1349; hypothetical protein complement(1345653..1346084) Listeria innocua Clip11262 1129941 NP_470686.1 CDS pyrH NC_003212.1 1346366 1347094 D highly similar to uridylate kinases; Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1346366..1347094 Listeria innocua Clip11262 1129942 NP_470687.1 CDS frr NC_003212.1 1347094 1347651 D highly similar to ribosome recycling factors; Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1347094..1347651 Listeria innocua Clip11262 1129943 NP_470688.1 CDS lin1352 NC_003212.1 1347881 1348639 D similar to undecaprenyl diphosphate synthase; catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 1347881..1348639 Listeria innocua Clip11262 1129944 NP_470689.1 CDS lin1353 NC_003212.1 1348653 1349441 D similar to phosphatidate cytidylyltransferase (CDP-diglyceride synthase); hypothetical protein 1348653..1349441 Listeria innocua Clip11262 1129945 NP_470690.1 CDS lin1354 NC_003212.1 1349456 1350598 D similar to deoxyxylulose 5-phosphate reductoisomerase; catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1349456..1350598 Listeria innocua Clip11262 1129946 NP_470691.1 CDS lin1355 NC_003212.1 1350612 1351874 D Putative zinc metalloprotease Lin1355; hypothetical protein 1350612..1351874 Listeria innocua Clip11262 1129947 NP_470692.1 CDS proS NC_003212.1 1351914 1353620 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1351914..1353620 Listeria innocua Clip11262 1129948 NP_470693.1 CDS polC NC_003212.1 1353726 1358060 D highly similar to DNA polymerase III (alpha subunit); catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 1353726..1358060 Listeria innocua Clip11262 1129949 NP_470694.1 CDS lin1358 NC_003212.1 1358242 1358709 D conserved hypothetical protein, similar to Bacillus subtilis YlxS protein; in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1358242..1358709 Listeria innocua Clip11262 1129950 NP_470695.1 CDS nusA NC_003212.1 1358739 1359857 D highly similar to N utilization substance protein A (NusA protein); modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1358739..1359857 Listeria innocua Clip11262 1129951 NP_470696.1 CDS lin1360 NC_003212.1 1359872 1360156 D similar to Bacillus subtilis YlxR protein; hypothetical protein 1359872..1360156 Listeria innocua Clip11262 1129952 NP_470697.1 CDS lin1361 NC_003212.1 1360149 1360448 D conserved hypothetical protein, similar to Bacillus subtilis YlxQ protein; hypothetical protein 1360149..1360448 Listeria innocua Clip11262 1129954 NP_470698.1 CDS infB NC_003212.1 1360471 1362819 D highly similar to translation initiation factor IF-2; Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1360471..1362819 Listeria innocua Clip11262 1129955 NP_470699.1 CDS lin1363 NC_003212.1 1362816 1363094 D conserved hypothetical protein similar to Bacillus subtilis YlxP protein; hypothetical protein 1362816..1363094 Listeria innocua Clip11262 1129956 NP_470700.1 CDS rbfA NC_003212.1 1363110 1363454 D highly similar to ribosome-binding factor A; associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1363110..1363454 Listeria innocua Clip11262 1129957 NP_470701.1 CDS truB NC_003212.1 1363551 1364465 D highly similar to tRNA pseudouridine 55 synthase; catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1363551..1364465 Listeria innocua Clip11262 1129958 NP_470702.1 CDS lin1366 NC_003212.1 1364536 1365480 D highly similar to riboflavin kinase and FAD synthase; hypothetical protein 1364536..1365480 Listeria innocua Clip11262 1129959 NP_470703.1 CDS rpsO NC_003212.1 1365617 1365886 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1365617..1365886 Listeria innocua Clip11262 1129960 NP_470704.1 CDS pnpA NC_003212.1 1366134 1368305 D polynucleotide phosphorylase/polyadenylase 1366134..1368305 Listeria innocua Clip11262 1129961 NP_470705.1 CDS lin1369 NC_003212.1 1368349 1369389 R Probable GTPase engC 2; hypothetical protein complement(1368349..1369389) Listeria innocua Clip11262 1129962 NP_470706.1 CDS lin1370 NC_003212.1 1369553 1370032 R similar to Bacillus subtilis YqzC protein; hypothetical protein complement(1369553..1370032) Listeria innocua Clip11262 1129963 NP_470707.1 CDS lin1371 NC_003212.1 1370060 1370416 R similar to Bacillus subtilis YqzD protein; hypothetical protein complement(1370060..1370416) Listeria innocua Clip11262 1129964 NP_470708.1 CDS rpmG NC_003212.1 1370614 1370763 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 1370614..1370763 Listeria innocua Clip11262 1129965 NP_470709.1 CDS lin1373 NC_003212.1 1370819 1371358 D similar to 5-formyltetrahydrofolate cyclo-ligase; hypothetical protein 1370819..1371358 Listeria innocua Clip11262 1129966 NP_470710.1 CDS lin1374 NC_003212.1 1371457 1372995 D similar to Bacillus subtilis yqgP; hypothetical protein 1371457..1372995 Listeria innocua Clip11262 1129967 NP_470711.1 CDS lin1375 NC_003212.1 1373008 1373220 D similar to Bacillus subtilis yqgQ; hypothetical protein 1373008..1373220 Listeria innocua Clip11262 1129968 NP_470712.1 CDS lin1376 NC_003212.1 1373245 1374213 D similar to glucose kinase; hypothetical protein 1373245..1374213 Listeria innocua Clip11262 1129969 NP_470713.1 CDS lin1377 NC_003212.1 1374384 1375436 D similar to Bacillus subtilis YqgU protein; hypothetical protein 1374384..1375436 Listeria innocua Clip11262 1129970 NP_470714.1 CDS lin1378 NC_003212.1 1375452 1375769 R weakly similar to Bacillus subtilis comG operon protein 7 (comGG); hypothetical protein complement(1375452..1375769) Listeria innocua Clip11262 1129971 NP_470715.1 CDS lin1379 NC_003212.1 1375769 1376233 R similar to Bacillus subtilis comG operon protein 6; hypothetical protein complement(1375769..1376233) Listeria innocua Clip11262 1129972 NP_470716.1 CDS lin1380 NC_003212.1 1376196 1376480 R similar to comG operon protein 5 (comGE); hypothetical protein complement(1376196..1376480) Listeria innocua Clip11262 1129973 NP_470717.1 CDS lin1381 NC_003212.1 1376473 1376895 R similar to comG operon protein 4 (comGD); hypothetical protein complement(1376473..1376895) Listeria innocua Clip11262 1129975 NP_470718.1 CDS lin1382 NC_003212.1 1376892 1377215 R similar to Bacillus subtilis comG operon protein 3; hypothetical protein complement(1376892..1377215) Listeria innocua Clip11262 1129977 NP_470719.1 CDS lin1383 NC_003212.1 1377229 1378260 R similar to Bacillus subtilis comG operon protein 2; hypothetical protein complement(1377229..1378260) Listeria innocua Clip11262 1129978 NP_470720.1 CDS lin1384 NC_003212.1 1378238 1379260 R similar to Bacillus subtilis comG operon protein 1; hypothetical protein complement(1378238..1379260) Listeria innocua Clip11262 1129979 NP_470721.1 CDS gcvT NC_003212.1 1379801 1380889 D similar to aminomethyltransferase; catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 1379801..1380889 Listeria innocua Clip11262 1129981 NP_470722.1 CDS lin1386 NC_003212.1 1380905 1382251 D similar to glycine dehydrogenase (decarboxylating) subunit 1; acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 1380905..1382251 Listeria innocua Clip11262 1129982 NP_470723.1 CDS lin1387 NC_003212.1 1382248 1383714 D similar to glycine dehydrogenase (decarboxylating) subunit 2; acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 1382248..1383714 Listeria innocua Clip11262 1129983 NP_470724.1 CDS lin1388 NC_003212.1 1383755 1384135 R lin1388; hypothetical protein complement(1383755..1384135) Listeria innocua Clip11262 1129984 NP_470725.1 CDS lin1389 NC_003212.1 1384197 1384469 R lin1389; hypothetical protein complement(1384197..1384469) Listeria innocua Clip11262 1129985 NP_470726.1 CDS lin1390 NC_003212.1 1384483 1385448 R similar to Bacillus subtilis YqhQ protein; hypothetical protein complement(1384483..1385448) Listeria innocua Clip11262 1129986 NP_470727.1 CDS lin1391 NC_003212.1 1385628 1386689 D similar to aminopeptidase P; hypothetical protein 1385628..1386689 Listeria innocua Clip11262 1129987 NP_470728.1 CDS lin1392 NC_003212.1 1386792 1387349 D highly similar to elongation factor P (EF-P); Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1386792..1387349 Listeria innocua Clip11262 1129988 NP_470729.1 CDS lin1393 NC_003212.1 1387509 1387979 D similar to acetyl-CoA carboxylase subunit (biotin carboxyl carrier subunit); hypothetical protein 1387509..1387979 Listeria innocua Clip11262 1129989 NP_470730.1 CDS lin1394 NC_003212.1 1387993 1389357 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 1387993..1389357 Listeria innocua Clip11262 1129990 NP_470731.1 CDS lin1395 NC_003212.1 1389360 1389767 D similar to Bacillus subtilis YqhY protein; hypothetical protein 1389360..1389767 Listeria innocua Clip11262 1129991 NP_470732.1 CDS nusB NC_003212.1 1389798 1390184 D similar to transcription termination protein (NusB); Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1389798..1390184 Listeria innocua Clip11262 1129992 NP_470733.1 CDS lin1397 NC_003212.1 1390276 1391130 D highly similar to methylenetetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclohydrolase; catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 1390276..1391130 Listeria innocua Clip11262 1129993 NP_470734.1 CDS xseA NC_003212.1 1391149 1392501 D similar to exodeoxyribonuclease VII (large subunit); bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1391149..1392501 Listeria innocua Clip11262 1129994 NP_470735.1 CDS lin1399 NC_003212.1 1392491 1392718 D similar to exodeoxyribonuclease small subunit; catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 1392491..1392718 Listeria innocua Clip11262 1129995 NP_470736.1 CDS lin1400 NC_003212.1 1392721 1393602 D similar to geranyltranstransferase; hypothetical protein 1392721..1393602 Listeria innocua Clip11262 1129997 NP_470737.1 CDS lin1401 NC_003212.1 1393801 1394001 D similar to cold shock protein; hypothetical protein 1393801..1394001 Listeria innocua Clip11262 1129998 NP_470738.1 CDS lin1402 NC_003212.1 1394166 1396064 D similar to D-1-deoxyxylulose 5-phosphate synthase; catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 1394166..1396064 Listeria innocua Clip11262 1129999 NP_470739.1 CDS lin1403 NC_003212.1 1396083 1396907 D hypothetical protein 1396083..1396907 Listeria innocua Clip11262 1130000 NP_470740.1 CDS lin1404 NC_003212.1 1397098 1397547 D similar to arginine repressor; regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 1397098..1397547 Listeria innocua Clip11262 1130001 NP_470741.1 CDS recN NC_003212.1 1397570 1399261 D DNA repair and genetic recombination 1397570..1399261 Listeria innocua Clip11262 1130002 NP_470742.1 CDS lin1406 NC_003212.1 1399391 1400257 D similar to phosphotransbutyrylase; hypothetical protein 1399391..1400257 Listeria innocua Clip11262 1130003 NP_470743.1 CDS lin1407 NC_003212.1 1400394 1401461 D similar to branched-chain fatty-acid kinase; catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase 1400394..1401461 Listeria innocua Clip11262 1130004 NP_470744.1 CDS lin1408 NC_003212.1 1401475 1402902 D similar to branched-chain alpha-keto acid dehydrogenase E3 subunit; E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1401475..1402902 Listeria innocua Clip11262 1130005 NP_470745.1 CDS lin1409 NC_003212.1 1402927 1403922 D similar to branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit); hypothetical protein 1402927..1403922 Listeria innocua Clip11262 1130006 NP_470746.1 CDS lin1410 NC_003212.1 1403939 1404922 D similar to branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit); BfmBAB 1403939..1404922 Listeria innocua Clip11262 1130007 NP_470747.1 CDS lin1411 NC_003212.1 1404953 1406203 D similar to branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase); hypothetical protein 1404953..1406203 Listeria innocua Clip11262 1130008 NP_470748.1 CDS lin1412 NC_003212.1 1406578 1407672 D similar to aminotripeptidase; hypothetical protein 1406578..1407672 Listeria innocua Clip11262 1130009 NP_470749.1 CDS lin1413 NC_003212.1 1407817 1409235 D similar to 6-phosphogluconate dehydrogenase; catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 1407817..1409235 Listeria innocua Clip11262 1130010 NP_470750.1 CDS lisR NC_003212.1 1409425 1410105 D two-component response regulator 1409425..1410105 Listeria innocua Clip11262 1130011 NP_470751.1 CDS lisK NC_003212.1 1410102 1411553 D two-component sensor histidine kinase 1410102..1411553 Listeria innocua Clip11262 1130012 NP_470752.1 CDS lin1416 NC_003212.1 1411590 1412417 R similar to Bacillus subtilis SpoIIIJ protein; involved in biogenesis of membrane proteins; Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site; OxaA-like protein precursor complement(1411590..1412417) Listeria innocua Clip11262 1130013 NP_470753.1 CDS lin1417 NC_003212.1 1412454 1412735 R lin1417; hypothetical protein complement(1412454..1412735) Listeria innocua Clip11262 1130014 NP_470754.1 CDS lin1418 NC_003212.1 1412821 1413102 R lin1418; catalyzes the hydrolysis of acylphosphate; acylphosphatase complement(1412821..1413102) Listeria innocua Clip11262 1130015 NP_470755.1 CDS lin1419 NC_003212.1 1413242 1413589 D lin1419; hypothetical protein 1413242..1413589 Listeria innocua Clip11262 1130016 NP_470756.1 CDS lin1420 NC_003212.1 1413629 1414705 D catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 1413629..1414705 Listeria innocua Clip11262 1130017 NP_470757.1 CDS lin1421 NC_003212.1 1414747 1415706 R hypothetical protein complement(1414747..1415706) Listeria innocua Clip11262 1130018 NP_470758.1 CDS lin1422 NC_003212.1 1415958 1416884 D hypothetical protein 1415958..1416884 Listeria innocua Clip11262 1130019 NP_470759.1 CDS lin1423 NC_003212.1 1417035 1419323 D similar to DNA translocase; hypothetical protein 1417035..1419323 Listeria innocua Clip11262 1130020 NP_470760.1 CDS lin1424 NC_003212.1 1419362 1420201 R similar to pyrroline-5-carboxylate reductase; catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(1419362..1420201) Listeria innocua Clip11262 1130021 NP_470761.1 CDS tcsA NC_003212.1 1420555 1421628 D CD4+ T cell-stimulating antigen, lipoprotein 1420555..1421628 Listeria innocua Clip11262 1130022 NP_470762.1 CDS lin1426 NC_003212.1 1422062 1423603 D similar to sugar ABC transporter, ATP-binding protein; hypothetical protein 1422062..1423603 Listeria innocua Clip11262 1130023 NP_470763.1 CDS lin1427 NC_003212.1 1423596 1424648 D similar to ABC transporter (permease proteins); hypothetical protein 1423596..1424648 Listeria innocua Clip11262 1130025 NP_470764.1 CDS lin1428 NC_003212.1 1424645 1425595 D similar to sugar ABC transporter, permease protein; hypothetical protein 1424645..1425595 Listeria innocua Clip11262 1130027 NP_470765.1 CDS lin1429 NC_003212.1 1425713 1427005 D similar to putative proteases; hypothetical protein 1425713..1427005 Listeria innocua Clip11262 1130028 NP_470766.1 CDS lin1430 NC_003212.1 1426986 1428272 D similar to putative protease; hypothetical protein 1426986..1428272 Listeria innocua Clip11262 1130030 NP_470767.1 CDS lin1431 NC_003212.1 1428372 1429103 D similar to 3-ketoacyl-acyl carrier protein reductase; hypothetical protein 1428372..1429103 Listeria innocua Clip11262 1130031 NP_470768.1 CDS lin1432 NC_003212.1 1429152 1430087 D hypothetical protein 1429152..1430087 Listeria innocua Clip11262 1130032 NP_470769.1 CDS lin1433 NC_003212.1 1430177 1430755 D similar to phosphatidylglycerophosphate synthase; hypothetical protein 1430177..1430755 Listeria innocua Clip11262 1130033 NP_470770.1 CDS lin1434 NC_003212.1 1430822 1432069 D similar to competence-damage inducible protein CinA; competence damage-inducible protein A 1430822..1432069 Listeria innocua Clip11262 1130034 NP_470771.1 CDS recA NC_003212.1 1432339 1433385 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1432339..1433385 Listeria innocua Clip11262 1130035 NP_470772.1 CDS lin1436 NC_003212.1 1433686 1435248 D protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 1433686..1435248 Listeria innocua Clip11262 1130036 NP_470773.1 CDS lin1437 NC_003212.1 1435364 1435861 D similar to N-acetyltransferase; hypothetical protein 1435364..1435861 Listeria innocua Clip11262 1130037 NP_470774.1 CDS lin1438 NC_003212.1 1435866 1436669 D hypothetical protein 1435866..1436669 Listeria innocua Clip11262 1130039 NP_470775.1 CDS lin1439 NC_003212.1 1436686 1437048 D similar to Bacillus subtilis YmcA protein; hypothetical protein 1436686..1437048 Listeria innocua Clip11262 1130040 NP_470776.1 CDS mutS NC_003212.1 1437158 1439740 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1437158..1439740 Listeria innocua Clip11262 1130041 NP_470777.1 CDS mutL NC_003212.1 1439760 1441571 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1439760..1441571 Listeria innocua Clip11262 1130042 NP_470778.1 CDS lin1442 NC_003212.1 1441591 1442139 D similar to putative anti-terminator regulatory protein; hypothetical protein 1441591..1442139 Listeria innocua Clip11262 1130043 NP_470779.1 CDS pflB NC_003212.1 1442565 1444796 D pyruvate formate-lyase 1442565..1444796 Listeria innocua Clip11262 1130044 NP_470780.1 CDS pflC NC_003212.1 1444874 1445620 D pyruvate-formate lyase activating enzyme 1444874..1445620 Listeria innocua Clip11262 1130045 NP_470781.1 CDS lin1445 NC_003212.1 1445655 1446185 R hypothetical protein complement(1445655..1446185) Listeria innocua Clip11262 1130046 NP_470782.1 CDS lin1446 NC_003212.1 1446353 1447546 D similar to multidrug-efflux transporter; hypothetical protein 1446353..1447546 Listeria innocua Clip11262 1130047 NP_470783.1 CDS lin1447 NC_003212.1 1447678 1448226 D lin1447; hypothetical protein 1447678..1448226 Listeria innocua Clip11262 1130048 NP_470784.1 CDS lin1448 NC_003212.1 1448227 1448469 D lin1448; hypothetical protein 1448227..1448469 Listeria innocua Clip11262 1130049 NP_470785.1 CDS lin1449 NC_003212.1 1448509 1449042 D modulates DNA topology 1448509..1449042 Listeria innocua Clip11262 1130050 NP_470786.1 CDS lin1450 NC_003212.1 1449388 1449900 R lin1450; hypothetical protein complement(1449388..1449900) Listeria innocua Clip11262 1130051 NP_470787.1 CDS lin1451 NC_003212.1 1449919 1451259 R lin1451; hypothetical protein complement(1449919..1451259) Listeria innocua Clip11262 1130052 NP_470788.1 CDS lin1452 NC_003212.1 1451373 1451750 R lin1452; hypothetical protein complement(1451373..1451750) Listeria innocua Clip11262 1130053 NP_470789.1 CDS lin1453 NC_003212.1 1451921 1453090 R similar to Acetyl-CoA:acetyltransferase; hypothetical protein complement(1451921..1453090) Listeria innocua Clip11262 1130054 NP_470790.1 CDS lin1454 NC_003212.1 1453240 1454406 D similar to hydroxy-3-methylglutaryl coenzyme A synthase; hypothetical protein 1453240..1454406 Listeria innocua Clip11262 1130055 NP_470791.1 CDS lin1455 NC_003212.1 1454433 1455032 R lin1455; hypothetical protein complement(1454433..1455032) Listeria innocua Clip11262 1130056 NP_470792.1 CDS lin1456 NC_003212.1 1455102 1456346 R highly similar to Bacillus subtilis YxiO protein; hypothetical protein complement(1455102..1456346) Listeria innocua Clip11262 1130057 NP_470793.1 CDS lin1457 NC_003212.1 1456365 1457633 R weakly similar to pyrophosphatase; hypothetical protein complement(1456365..1457633) Listeria innocua Clip11262 1130058 NP_470794.1 CDS lin1458 NC_003212.1 1457696 1458733 R hypothetical protein complement(1457696..1458733) Listeria innocua Clip11262 1130059 NP_470795.1 CDS murB NC_003212.1 1458761 1459657 R weakly similar to UDP-N-acetylglucosaminyl-3-enolpyruvate reductase; catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(1458761..1459657) Listeria innocua Clip11262 1130060 NP_470796.1 CDS lin1460 NC_003212.1 1459876 1460859 D similar to glycine betaine/carnitine/choline ABC transporter (ATP-binding protein); hypothetical protein 1459876..1460859 Listeria innocua Clip11262 1130061 NP_470797.1 CDS lin1461 NC_003212.1 1460856 1462370 D similar to glycine betaine/carnitine/choline ABC transporter (membrane protein); hypothetical protein 1460856..1462370 Listeria innocua Clip11262 1130062 NP_470798.1 CDS lin1462 NC_003212.1 1462410 1463240 R lin1462; hypothetical protein complement(1462410..1463240) Listeria innocua Clip11262 1130063 NP_470799.1 CDS lin1463 NC_003212.1 1463378 1464724 R similar to manganese transport proteins NRAMP; manganese transport protein MntH complement(1463378..1464724) Listeria innocua Clip11262 1130064 NP_470800.1 CDS lin1464 NC_003212.1 1464837 1465508 R similar to betaine/carnitine/choline ABC transporter (membrane p); hypothetical protein complement(1464837..1465508) Listeria innocua Clip11262 1130065 NP_470801.1 CDS lin1465 NC_003212.1 1465523 1466449 R similar to glycine betaine/carnitine/choline ABC transporter (osmoprotectant-binding protein); hypothetical protein complement(1465523..1466449) Listeria innocua Clip11262 1130066 NP_470802.1 CDS lin1466 NC_003212.1 1466451 1467107 R similar to glycine betaine/carnitine/choline ABC transporter (membrane protein); hypothetical protein complement(1466451..1467107) Listeria innocua Clip11262 1130067 NP_470803.1 CDS lin1467 NC_003212.1 1467111 1468304 R similar to glycine betaine/carnitine/choline ABC transporter (ATP-binding protein); hypothetical protein complement(1467111..1468304) Listeria innocua Clip11262 1130069 NP_470804.1 CDS lin1468 NC_003212.1 1468598 1469158 R hypothetical protein complement(1468598..1469158) Listeria innocua Clip11262 1130071 NP_470805.1 CDS lin1469 NC_003212.1 1469406 1469789 R hypothetical protein complement(1469406..1469789) Listeria innocua Clip11262 1130072 NP_470806.1 CDS lin1470 NC_003212.1 1469929 1471530 D similar to ABC transporter (ATP-binding protein); hypothetical protein 1469929..1471530 Listeria innocua Clip11262 1130073 NP_470807.1 CDS lin1471 NC_003212.1 1471569 1472219 R lin1471; hypothetical protein complement(1471569..1472219) Listeria innocua Clip11262 1130075 NP_470808.1 CDS lin1472 NC_003212.1 1472272 1473612 R similar to glutathione reductase; hypothetical protein complement(1472272..1473612) Listeria innocua Clip11262 1130076 NP_470809.1 CDS lin1473 NC_003212.1 1473700 1475367 R hypothetical protein complement(1473700..1475367) Listeria innocua Clip11262 1130077 NP_470810.1 CDS dapA NC_003212.1 1475387 1476268 R similar to dihydrodipicolinate synthase; catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(1475387..1476268) Listeria innocua Clip11262 1130078 NP_470811.1 CDS lin1475 NC_003212.1 1476283 1477494 R similar to aspartokinase I (alpha and beta subunits); catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive; aspartate kinase I complement(1476283..1477494) Listeria innocua Clip11262 1130079 NP_470812.1 CDS lin1476 NC_003212.1 1477506 1478549 R similar to aspartate-semialdehyde dehydrogenase; hypothetical protein complement(1477506..1478549) Listeria innocua Clip11262 1130080 NP_470813.1 CDS lin1477 NC_003212.1 1478748 1480913 R similar to penicillin-binding protein; hypothetical protein complement(1478748..1480913) Listeria innocua Clip11262 1130081 NP_470814.1 CDS sod NC_003212.1 1481043 1481651 R superoxide dismutase complement(1481043..1481651) Listeria innocua Clip11262 1130082 NP_470815.1 CDS lin1479 NC_003212.1 1481958 1482758 D hypothetical protein 1481958..1482758 Listeria innocua Clip11262 1130083 NP_470816.1 CDS lin1480 NC_003212.1 1482973 1483680 D similar to transport proteins; hypothetical protein 1482973..1483680 Listeria innocua Clip11262 1130084 NP_470817.1 CDS lin1481 NC_003212.1 1483671 1483997 D lin1481; hypothetical protein 1483671..1483997 Listeria innocua Clip11262 1130086 NP_470818.1 CDS lin1482 NC_003212.1 1484079 1484963 R similar to protein secretion PrsA (post-translocation molecular chaperone); hypothetical protein complement(1484079..1484963) Listeria innocua Clip11262 1130087 NP_470819.1 CDS zurR NC_003212.1 1485101 1485526 R transcriptional regulator ZurR (ferric uptake regulation) complement(1485101..1485526) Listeria innocua Clip11262 1130088 NP_470820.1 CDS zurM NC_003212.1 1485507 1486385 R metal (zinc) transport protein (ABC transporter, permease protein) complement(1485507..1486385) Listeria innocua Clip11262 1130089 NP_470821.1 CDS zurA NC_003212.1 1486360 1487133 R metal (zinc) transport protein(ABC transporter, ATP-binding protein) complement(1486360..1487133) Listeria innocua Clip11262 1130091 NP_470822.1 CDS lin1486 NC_003212.1 1487275 1488201 R Probable manganese-dependent inorganic pyrophosphatase; catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase complement(1487275..1488201) Listeria innocua Clip11262 1130093 NP_470823.1 CDS lin1487 NC_003212.1 1488218 1489111 R similar to endonuclease IV; Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV complement(1488218..1489111) Listeria innocua Clip11262 1130094 NP_470824.1 CDS lin1488 NC_003212.1 1489127 1490434 R similar to ATP-dependent RNA helicase, DEAD-box family (deaD); hypothetical protein complement(1489127..1490434) Listeria innocua Clip11262 1130095 NP_470825.1 CDS lin1489 NC_003212.1 1490613 1491734 R hypothetical protein complement(1490613..1491734) Listeria innocua Clip11262 1130096 NP_470826.1 CDS lin1490 NC_003212.1 1491731 1492435 R hypothetical protein complement(1491731..1492435) Listeria innocua Clip11262 1130097 NP_470827.1 CDS rpoD NC_003212.1 1492503 1493627 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD complement(1492503..1493627) Listeria innocua Clip11262 1130099 NP_470828.1 CDS dnaG NC_003212.1 1493722 1495602 R DNA primase complement(1493722..1495602) Listeria innocua Clip11262 1130100 NP_470829.1 CDS lin1493 NC_003212.1 1495622 1496062 R hypothetical protein complement(1495622..1496062) Listeria innocua Clip11262 1130101 NP_470830.1 CDS lin1494 NC_003212.1 1496250 1497074 R hypothetical protein complement(1496250..1497074) Listeria innocua Clip11262 1130102 NP_470831.1 CDS glyS NC_003212.1 1497109 1499175 R similar to glycyl-tRNA synthetase beta chain; glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(1497109..1499175) Listeria innocua Clip11262 1130103 NP_470832.1 CDS glyQ NC_003212.1 1499168 1500058 R similar to glycyl-tRNA synthetase alpha chain; glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(1499168..1500058) Listeria innocua Clip11262 1130104 NP_470833.1 CDS recO NC_003212.1 1500339 1501106 R similar to Bacillus subtilis RecO protein involved in DNA repair and homologous recombination; involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(1500339..1501106) Listeria innocua Clip11262 1130105 NP_470834.1 CDS lin1498 NC_003212.1 1501244 1501861 D lin1498; hypothetical protein 1501244..1501861 Listeria innocua Clip11262 1130106 NP_470835.1 CDS era NC_003212.1 1501908 1502813 R similar to GTP binding proteins; Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(1501908..1502813) Listeria innocua Clip11262 1130107 NP_470836.1 CDS lin1500 NC_003212.1 1502810 1503205 R similar to cytidine deaminase; hypothetical protein complement(1502810..1503205) Listeria innocua Clip11262 1130108 NP_470837.1 CDS lin1501 NC_003212.1 1503230 1503625 R similar to diacylglycerol kinase; hypothetical protein complement(1503230..1503625) Listeria innocua Clip11262 1130110 NP_470838.1 CDS lin1502 NC_003212.1 1503603 1504088 R putative metalloprotease complement(1503603..1504088) Listeria innocua Clip11262 1130111 NP_470839.1 CDS lin1503 NC_003212.1 1504105 1506261 R hypothetical protein complement(1504105..1506261) Listeria innocua Clip11262 1130113 NP_470840.1 CDS lin1504 NC_003212.1 1506277 1507236 R similar to phosphate starvation induced protein PhoH; hypothetical protein complement(1506277..1507236) Listeria innocua Clip11262 1130114 NP_470841.1 CDS lin1505 NC_003212.1 1507426 1507872 R hypothetical protein complement(1507426..1507872) Listeria innocua Clip11262 1130115 NP_470842.1 CDS rpsU NC_003212.1 1507892 1508065 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1507892..1508065) Listeria innocua Clip11262 1130116 NP_470843.1 CDS lin1507 NC_003212.1 1508263 1509030 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(1508263..1509030) Listeria innocua Clip11262 1130117 NP_470844.1 CDS prmA NC_003212.1 1509031 1509975 R similar to ribosomal protein L11 methyltransferase; methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase complement(1509031..1509975) Listeria innocua Clip11262 1130118 NP_470845.1 CDS dnaJ NC_003212.1 1510048 1511178 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(1510048..1511178) Listeria innocua Clip11262 1130120 NP_470846.1 CDS dnaK NC_003212.1 1511321 1513162 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(1511321..1513162) Listeria innocua Clip11262 1130121 NP_470847.1 CDS grpE NC_003212.1 1513196 1513771 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(1513196..1513771) Listeria innocua Clip11262 1130122 NP_470848.1 CDS hrcA NC_003212.1 1513813 1514850 R Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor complement(1513813..1514850) Listeria innocua Clip11262 1130123 NP_470849.1 CDS lin1513 NC_003212.1 1514997 1516154 R highly similar to coproporphyrinogen III oxidase; catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(1514997..1516154) Listeria innocua Clip11262 1130124 NP_470850.1 CDS lin1514 NC_003212.1 1516298 1518124 R highly similar to GTP-binding protein LepA; binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(1516298..1518124) Listeria innocua Clip11262 1130125 NP_470851.1 CDS rpsT NC_003212.1 1518369 1518623 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1518369..1518623 Listeria innocua Clip11262 1130126 NP_470852.1 CDS holA NC_003212.1 1518708 1519739 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(1518708..1519739) Listeria innocua Clip11262 1130127 NP_470853.1 CDS lin1517 NC_003212.1 1519807 1522047 R similar to putative integral membrane protein ComEC specifically required for DNA uptake but not for binding; hypothetical protein complement(1519807..1522047) Listeria innocua Clip11262 1130128 NP_470854.1 CDS lin1518 NC_003212.1 1522064 1522624 R similar to Bacillus subtilis ComEB protein; hypothetical protein complement(1522064..1522624) Listeria innocua Clip11262 1130129 NP_470855.1 CDS lin1519 NC_003212.1 1522696 1523298 R similar to integral membrane protein ComEA; hypothetical protein complement(1522696..1523298) Listeria innocua Clip11262 1130130 NP_470856.1 CDS lin1520 NC_003212.1 1523401 1524132 R hypothetical protein complement(1523401..1524132) Listeria innocua Clip11262 1130131 NP_470857.1 CDS lin1521 NC_003212.1 1524193 1524549 R lin1521; hypothetical protein complement(1524193..1524549) Listeria innocua Clip11262 1130132 NP_470858.1 CDS lin1522 NC_003212.1 1524554 1525129 R hypothetical protein complement(1524554..1525129) Listeria innocua Clip11262 1130133 NP_470859.1 CDS nadD NC_003212.1 1525116 1525682 R transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase complement(1525116..1525682) Listeria innocua Clip11262 1130135 NP_470860.1 CDS lin1524 NC_003212.1 1525701 1525991 R hypothetical protein complement(1525701..1525991) Listeria innocua Clip11262 1130137 NP_470861.1 CDS lin1525 NC_003212.1 1525991 1526812 R similar to shikimate 5-dehydrogenase (AroD); hypothetical protein complement(1525991..1526812) Listeria innocua Clip11262 1130138 NP_470862.1 CDS lin1526 NC_003212.1 1526832 1527932 R in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis; GTP-binding protein YqeH complement(1526832..1527932) Listeria innocua Clip11262 1130139 NP_470863.1 CDS lin1527 NC_003212.1 1527929 1528450 R hypothetical protein complement(1527929..1528450) Listeria innocua Clip11262 1130140 NP_470864.1 CDS lin1528 NC_003212.1 1528614 1530422 D similar to oligopeptidase; hypothetical protein 1528614..1530422 Listeria innocua Clip11262 1130142 NP_470865.1 CDS lin1529 NC_003212.1 1530455 1531156 R similar to 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; hypothetical protein complement(1530455..1531156) Listeria innocua Clip11262 1130143 NP_470866.1 CDS lin1530 NC_003212.1 1531207 1531839 R hypothetical protein complement(1531207..1531839) Listeria innocua Clip11262 1130144 NP_470867.1 CDS greA NC_003212.1 1531887 1532369 R similar to transcription elongation factor GreA; necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(1531887..1532369) Listeria innocua Clip11262 1130145 NP_470868.1 CDS lin1532 NC_003212.1 1532563 1533192 R similar to Uridine kinase; functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(1532563..1533192) Listeria innocua Clip11262 1130146 NP_470869.1 CDS lin1533 NC_003212.1 1533189 1533842 R similar to O-methyltransferase; hypothetical protein complement(1533189..1533842) Listeria innocua Clip11262 1130147 NP_470870.1 CDS lin1534 NC_003212.1 1533919 1534989 R hypothetical protein complement(1533919..1534989) Listeria innocua Clip11262 1130149 NP_470871.1 CDS lin1535 NC_003212.1 1535192 1535818 D hypothetical protein 1535192..1535818 Listeria innocua Clip11262 1130150 NP_470872.1 CDS lin1536 NC_003212.1 1535863 1536165 R hypothetical protein complement(1535863..1536165) Listeria innocua Clip11262 1130151 NP_470873.1 CDS lin1537 NC_003212.1 1536181 1536597 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(1536181..1536597) Listeria innocua Clip11262 1130152 NP_470874.1 CDS lin1538 NC_003212.1 1536594 1536866 R lin1538; hypothetical protein complement(1536594..1536866) Listeria innocua Clip11262 1130153 NP_470875.1 CDS alaS NC_003212.1 1536959 1539598 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(1536959..1539598) Listeria innocua Clip11262 1130154 NP_470876.1 CDS lin1540 NC_003212.1 1539906 1540601 R similar to ABC transporter, ATP-binding protein; hypothetical protein complement(1539906..1540601) Listeria innocua Clip11262 1130155 NP_470877.1 CDS lin1541 NC_003212.1 1540610 1542112 R similar to transporter; hypothetical protein complement(1540610..1542112) Listeria innocua Clip11262 1130156 NP_470878.1 CDS lin1542 NC_003212.1 1542280 1542966 D similar to two-component response regulators; hypothetical protein 1542280..1542966 Listeria innocua Clip11262 1130157 NP_470879.1 CDS lin1543 NC_003212.1 1542963 1544402 D similar to two-component sensor histidine kinase; hypothetical protein 1542963..1544402 Listeria innocua Clip11262 1130158 NP_470880.1 CDS lin1544 NC_003212.1 1544432 1546828 R similar to exodeoxyribonuclease V; hypothetical protein complement(1544432..1546828) Listeria innocua Clip11262 1130159 NP_470881.1 CDS lin1545 NC_003212.1 1546854 1547492 R hypothetical protein complement(1546854..1547492) Listeria innocua Clip11262 1130160 NP_470882.1 CDS lin1546 NC_003212.1 1547536 1548276 R hypothetical protein complement(1547536..1548276) Listeria innocua Clip11262 1130161 NP_470883.1 CDS mnmA NC_003212.1 1548394 1549509 R similar to putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(1548394..1549509) Listeria innocua Clip11262 1130162 NP_470884.1 CDS lin1548 NC_003212.1 1549528 1550676 R similar to iron-sulfur cofactor synthesis protein; hypothetical protein complement(1549528..1550676) Listeria innocua Clip11262 1130163 NP_470885.1 CDS lin1549 NC_003212.1 1551057 1552340 R recombination factor protein RarA complement(1551057..1552340) Listeria innocua Clip11262 1130164 NP_470886.1 CDS lin1550 NC_003212.1 1552490 1552912 D hypothetical protein 1552490..1552912 Listeria innocua Clip11262 1130165 NP_470887.1 CDS lin1551 NC_003212.1 1553157 1554362 D similar to ammonium transporter NrgA; hypothetical protein 1553157..1554362 Listeria innocua Clip11262 1130166 NP_470888.1 CDS lin1552 NC_003212.1 1554376 1554741 D similar to nitrogen regulatory PII protein; hypothetical protein 1554376..1554741 Listeria innocua Clip11262 1130167 NP_470889.1 CDS lin1553 NC_003212.1 1554891 1555271 D lin1553; hypothetical protein 1554891..1555271 Listeria innocua Clip11262 1130168 NP_470890.1 CDS aspS NC_003212.1 1555307 1557082 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(1555307..1557082) Listeria innocua Clip11262 1130169 NP_470891.1 CDS hisS NC_003212.1 1557084 1558361 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(1557084..1558361) Listeria innocua Clip11262 1130170 NP_470892.1 CDS lin1556 NC_003212.1 1558803 1560086 D similar to N-acetylmuramoyl-L-alanine amidase; hypothetical protein 1558803..1560086 Listeria innocua Clip11262 1130171 NP_470893.1 CDS lin1557 NC_003212.1 1560135 1560587 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(1560135..1560587) Listeria innocua Clip11262 1130172 NP_470894.1 CDS lin1558 NC_003212.1 1560603 1562819 R similar to (p)ppGpp synthetase; hypothetical protein complement(1560603..1562819) Listeria innocua Clip11262 1130173 NP_470895.1 CDS lin1559 NC_003212.1 1563025 1563546 R similar to adenine phosphoribosyltransferase; catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(1563025..1563546) Listeria innocua Clip11262 1130174 NP_470896.1 CDS lin1560 NC_003212.1 1563536 1565887 R similar to single-stranded-DNA-specific exonuclease (RecJ); hypothetical protein complement(1563536..1565887) Listeria innocua Clip11262 1130175 NP_470897.1 CDS lin1561 NC_003212.1 1565992 1566336 R hypothetical protein complement(1565992..1566336) Listeria innocua Clip11262 1130177 NP_470898.1 CDS lin1562 NC_003212.1 1566433 1568697 R similar to protein-export membrane protein SecDF; part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; bifunctional preprotein translocase subunit SecD/SecF complement(1566433..1568697) Listeria innocua Clip11262 1130178 NP_470899.1 CDS lin1563 NC_003212.1 1568807 1569100 R hypothetical protein complement(1568807..1569100) Listeria innocua Clip11262 1130179 NP_470900.1 CDS lin1564 NC_003212.1 1569241 1569573 R hypothetical protein complement(1569241..1569573) Listeria innocua Clip11262 1130180 NP_470901.1 CDS tgt NC_003212.1 1569607 1570746 R similar to tRNA-guanine transglycosylase Tgt; Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(1569607..1570746) Listeria innocua Clip11262 1130181 NP_470902.1 CDS queA NC_003212.1 1570833 1571861 R similar to S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase complement(1570833..1571861) Listeria innocua Clip11262 1130182 NP_470903.1 CDS ruvB NC_003212.1 1571865 1572872 R highly similar to Holliday junction DNA helicase RuvB; promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(1571865..1572872) Listeria innocua Clip11262 1130183 NP_470904.1 CDS ruvA NC_003212.1 1572888 1573493 R highly similar to Holliday junction DNA helicase (ruvA); plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(1572888..1573493) Listeria innocua Clip11262 1130185 NP_470905.1 CDS lin1569 NC_003212.1 1573618 1574553 R similar to L-lactate dehydrogenase; hypothetical protein complement(1573618..1574553) Listeria innocua Clip11262 1130186 NP_470906.1 CDS lin1570 NC_003212.1 1574620 1575345 R hypothetical protein complement(1574620..1575345) Listeria innocua Clip11262 1130187 NP_470907.1 CDS lin1571 NC_003212.1 1575458 1576306 R similar to prephenate dehydratase PheA; catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; prephenate dehydratase complement(1575458..1576306) Listeria innocua Clip11262 1130188 NP_470908.1 CDS obgE NC_003212.1 1576374 1577663 R conserved GTP binding protein; essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(1576374..1577663) Listeria innocua Clip11262 1130189 NP_470909.1 CDS glpK NC_003212.1 1577823 1579316 R similar to glycerol kinase; Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase complement(1577823..1579316) Listeria innocua Clip11262 1130190 NP_470910.1 CDS lin1574 NC_003212.1 1579391 1580209 R similar to glycerol uptake facilitator; hypothetical protein complement(1579391..1580209) Listeria innocua Clip11262 1130191 NP_470911.1 CDS rpmA NC_003212.1 1580576 1580866 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(1580576..1580866) Listeria innocua Clip11262 1130192 NP_470912.1 CDS lin1576 NC_003212.1 1580880 1581197 R hypothetical protein complement(1580880..1581197) Listeria innocua Clip11262 1130193 NP_470913.1 CDS rplU NC_003212.1 1581216 1581524 R 50S ribosomal protein L21 complement(1581216..1581524) Listeria innocua Clip11262 1130194 NP_470914.1 CDS lin1578 NC_003212.1 1581681 1583042 R similar to ribonuclease G; hypothetical protein complement(1581681..1583042) Listeria innocua Clip11262 1130195 NP_470915.1 CDS lin1579 NC_003212.1 1583095 1583895 R highly similar to cell division inhibitor (septum placement) protein MinD; hypothetical protein complement(1583095..1583895) Listeria innocua Clip11262 1130196 NP_470916.1 CDS minC NC_003212.1 1583898 1584575 R similar to cell-division inhibition (septum placement) protein MinC; blocks the formation of polar Z-ring septums; septum formation inhibitor complement(1583898..1584575) Listeria innocua Clip11262 1130197 NP_470917.1 CDS lin1581 NC_003212.1 1584754 1585272 R similar to cell-shape determining protein MreD; hypothetical protein complement(1584754..1585272) Listeria innocua Clip11262 1130199 NP_470918.1 CDS lin1582 NC_003212.1 1585275 1586162 R similar to cell-shape determining protein MreC; in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(1585275..1586162) Listeria innocua Clip11262 1130200 NP_470919.1 CDS lin1583 NC_003212.1 1586248 1587261 R similar to cell-shape determining protein MreB; functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(1586248..1587261) Listeria innocua Clip11262 1130201 NP_470920.1 CDS radC NC_003212.1 1587714 1588388 R similar to DNA repair protein RadC; Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(1587714..1588388) Listeria innocua Clip11262 1130202 NP_470921.1 CDS lin1585 NC_003212.1 1588401 1589111 R similar to Bacillus subtilis late competence protein ComC (type IV prepilin peptidase); hypothetical protein complement(1588401..1589111) Listeria innocua Clip11262 1130203 NP_470922.1 CDS lin1586 NC_003212.1 1589325 1590614 R similar to Folyl-polyglutamate synthetase; hypothetical protein complement(1589325..1590614) Listeria innocua Clip11262 1130204 NP_470923.1 CDS valS NC_003212.1 1590678 1593326 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(1590678..1593326) Listeria innocua Clip11262 1130205 NP_470924.1 CDS lin1588 NC_003212.1 1593648 1594937 R highly similar to glutamate-1-semialdehyde 2,1-aminotransferases; Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(1593648..1594937) Listeria innocua Clip11262 1130206 NP_470925.1 CDS lin1589 NC_003212.1 1594950 1595924 R highly similar to delta-aminolevulinic acid dehydratases (porphobilinogen synthase); catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(1594950..1595924) Listeria innocua Clip11262 1130207 NP_470926.1 CDS hemD NC_003212.1 1595921 1596643 R similar to uroporphyrinogen III cosynthase (HemD); catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase complement(1595921..1596643) Listeria innocua Clip11262 1130208 NP_470927.1 CDS hemC NC_003212.1 1596640 1597569 R highly similar to porphobilinogen deaminases (hydroxymethylbilane synthase); transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(1596640..1597569) Listeria innocua Clip11262 1130210 NP_470928.1 CDS hemA NC_003212.1 1597573 1598880 R highly similar to glutamyl-tRNA reductase; catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(1597573..1598880) Listeria innocua Clip11262 1130212 NP_470929.1 CDS engB NC_003212.1 1599008 1599592 R Probable GTP-binding protein engB; binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(1599008..1599592) Listeria innocua Clip11262 1130214 NP_470930.1 CDS thrS NC_003212.1 1599698 1601620 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(1599698..1601620) Listeria innocua Clip11262 1130215 NP_470931.1 CDS dnaI NC_003212.1 1601971 1602894 R Primosomal protein that may act to load helicase DnaC during DNA replication; primosomal protein DnaI complement(1601971..1602894) Listeria innocua Clip11262 1130216 NP_470932.1 CDS dnaB NC_003212.1 1602904 1604280 R chromosome replication initiation / membrane attachment protein DnaB complement(1602904..1604280) Listeria innocua Clip11262 1130217 NP_470933.1 CDS nrdR NC_003212.1 1604286 1604750 R transcriptional regulator NrdR complement(1604286..1604750) Listeria innocua Clip11262 1130218 NP_470934.1 CDS coaE NC_003212.1 1604828 1605430 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(1604828..1605430) Listeria innocua Clip11262 1130219 NP_470935.1 CDS lin1599 NC_003212.1 1605447 1606268 R highly similar to formamidopyrimidine-DNA glycosylases; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(1605447..1606268) Listeria innocua Clip11262 1130220 NP_470936.1 CDS polA NC_003212.1 1606292 1608919 R has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I complement(1606292..1608919) Listeria innocua Clip11262 1130221 NP_470937.1 CDS lin1601 NC_003212.1 1609085 1610347 R highly similar to isocitrate dehyrogenases; Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase complement(1609085..1610347) Listeria innocua Clip11262 1130222 NP_470938.1 CDS lin1602 NC_003212.1 1610367 1611488 R highly similar to citrate synthase subunit II; catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; citrate synthase complement(1610367..1611488) Listeria innocua Clip11262 1130223 NP_470939.1 CDS lin1603 NC_003212.1 1611525 1611986 R hypothetical protein complement(1611525..1611986) Listeria innocua Clip11262 1130224 NP_470940.1 CDS fxsA NC_003212.1 1612144 1612521 R F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA complement(1612144..1612521) Listeria innocua Clip11262 1130225 NP_470941.1 CDS lin1605 NC_003212.1 1612641 1614398 R highly similar to pyruvate kinases; catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(1612641..1614398) Listeria innocua Clip11262 1130226 NP_470942.1 CDS pfkA NC_003212.1 1614680 1615639 R lin1606; catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase complement(1614680..1615639) Listeria innocua Clip11262 1130227 NP_470943.1 CDS lin1607 NC_003212.1 1615924 1616880 R highly similar to acetyl CoA carboxylase (alpha subunit); catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(1615924..1616880) Listeria innocua Clip11262 1130228 NP_470944.1 CDS lin1608 NC_003212.1 1616870 1617754 R highly similar to acetyl-CoA carboxylase beta subunit; catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(1616870..1617754) Listeria innocua Clip11262 1130229 NP_470945.1 CDS lin1609 NC_003212.1 1617970 1621296 R highly similar to DNA polymerase III (alpha subunit) DnaE; hypothetical protein complement(1617970..1621296) Listeria innocua Clip11262 1130230 NP_470946.1 CDS lin1610 NC_003212.1 1621419 1622354 R hypothetical protein complement(1621419..1622354) Listeria innocua Clip11262 1130231 NP_470947.1 CDS lin1611 NC_003212.1 1622375 1623688 R hypothetical protein complement(1622375..1623688) Listeria innocua Clip11262 1130232 NP_470948.1 CDS lin1612 NC_003212.1 1623714 1624400 R catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins; metal-dependent hydrolase complement(1623714..1624400) Listeria innocua Clip11262 1130233 NP_470949.1 CDS lin1613 NC_003212.1 1624564 1625661 D similar to X-Pro dipeptidase; hypothetical protein 1624564..1625661 Listeria innocua Clip11262 1130234 NP_470950.1 CDS lin1614 NC_003212.1 1625701 1626813 R similar to alanine dehydrogenase; hypothetical protein complement(1625701..1626813) Listeria innocua Clip11262 1130235 NP_470951.1 CDS lin1615 NC_003212.1 1627052 1627510 D hypothetical protein 1627052..1627510 Listeria innocua Clip11262 1130236 NP_470952.1 CDS lin1616 NC_003212.1 1627562 1628755 R highly similar to acetate kinase; AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(1627562..1628755) Listeria innocua Clip11262 1130237 NP_470953.1 CDS lin1617 NC_003212.1 1628779 1629777 R weakly similar to site specific DNA-methyltransferase; hypothetical protein complement(1628779..1629777) Listeria innocua Clip11262 1130238 NP_470954.1 CDS lin1618 NC_003212.1 1630221 1630448 R similar to a protein encoded by Th916; hypothetical protein complement(1630221..1630448) Listeria innocua Clip11262 1130239 NP_470955.1 CDS lin1619 NC_003212.1 1630441 1630869 R lin1619; hypothetical protein complement(1630441..1630869) Listeria innocua Clip11262 1130240 NP_470956.1 CDS lin1620 NC_003212.1 1630989 1631675 R similar to putative iron-sulfur flavoprotein; hypothetical protein complement(1630989..1631675) Listeria innocua Clip11262 1130242 NP_470957.1 CDS lin1621 NC_003212.1 1631693 1632454 R similar to ketoacyl reductases; hypothetical protein complement(1631693..1632454) Listeria innocua Clip11262 1130243 NP_470958.1 CDS lin1622 NC_003212.1 1632451 1632888 R similar to transcriptional regulator (MerR family); hypothetical protein complement(1632451..1632888) Listeria innocua Clip11262 1130244 NP_470959.1 CDS lin1623 NC_003212.1 1633423 1634328 D similar to site-specific recombinase tnpX - Clostridium perfringens transposon Tn4451 (N terminal part); hypothetical protein 1633423..1634328 Listeria innocua Clip11262 1130246 NP_470960.1 CDS lin1624 NC_003212.1 1634365 1635084 D similar to site-specific recombinase tnpX - Clostridium perfringens transposon Tn4451; hypothetical protein 1634365..1635084 Listeria innocua Clip11262 1130247 NP_470961.1 CDS tpx NC_003212.1 1635160 1635657 R similar to thiol peroxidases; antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase complement(1635160..1635657) Listeria innocua Clip11262 1130248 NP_470962.1 CDS lin1626 NC_003212.1 1635718 1636254 R hypothetical protein complement(1635718..1636254) Listeria innocua Clip11262 1130249 NP_470963.1 CDS lin1627 NC_003212.1 1636274 1637287 R similar to proteases; hypothetical protein complement(1636274..1637287) Listeria innocua Clip11262 1130250 NP_470964.1 CDS ppnK NC_003212.1 1637466 1638269 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 1637466..1638269 Listeria innocua Clip11262 1130251 NP_470965.1 CDS lin1629 NC_003212.1 1638302 1639252 R highly similar to ornithine carbamoyltransferase; catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(1638302..1639252) Listeria innocua Clip11262 1130252 NP_470966.1 CDS argD NC_003212.1 1639254 1640408 R highly similar to N-acetylornithine aminotransferase; acetylornithine aminotransferase complement(1639254..1640408) Listeria innocua Clip11262 1130253 NP_470967.1 CDS lin1631 NC_003212.1 1640405 1641157 R highly similar to N-acetylglutamate 5-phosphotransferase; catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(1640405..1641157) Listeria innocua Clip11262 1130255 NP_470968.1 CDS argJ NC_003212.1 1641170 1642366 R highly similar to ornithine acetyltransferase and amino-acid acetyltransferases; bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein complement(1641170..1642366) Listeria innocua Clip11262 1130257 NP_470969.1 CDS argC NC_003212.1 1642382 1643413 R similar to N-acetylglutamate gamma-semialdehyde dehydrogenases; catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(1642382..1643413) Listeria innocua Clip11262 1130258 NP_470970.1 CDS lin1634 NC_003212.1 1643585 1644796 R similar to thiamin biosynthesis protein ThiI; Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(1643585..1644796) Listeria innocua Clip11262 1130259 NP_470971.1 CDS lin1635 NC_003212.1 1644798 1645937 R similar to iron-sulfur cofactor synthesis protein nifS; hypothetical protein complement(1644798..1645937) Listeria innocua Clip11262 1130260 NP_470972.1 CDS lin1636 NC_003212.1 1646065 1647780 R similar to Bacillus subtilis negative regulator of FtsZ ring formation (EzrA); acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation; septation ring formation regulator EzrA complement(1646065..1647780) Listeria innocua Clip11262 1130261 NP_470973.1 CDS lin1637 NC_003212.1 1648060 1648548 D hypothetical protein 1648060..1648548 Listeria innocua Clip11262 1130262 NP_470974.1 CDS rpsD NC_003212.1 1648760 1649362 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1648760..1649362 Listeria innocua Clip11262 1130263 NP_470975.1 CDS tyrS NC_003212.1 1649462 1650721 R tyrosyl-tRNA synthetase complement(1649462..1650721) Listeria innocua Clip11262 1130264 NP_470976.1 CDS ccpA NC_003212.1 1651043 1652050 R catabolite control protein A complement(1651043..1652050) Listeria innocua Clip11262 1130265 NP_470977.1 CDS aroA NC_003212.1 1652285 1653370 R catalyzes the formation of 3-deoxy-D-aribino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate and the formation of prephenate from chorismate; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase complement(1652285..1653370) Listeria innocua Clip11262 1130266 NP_470978.1 CDS lin1642 NC_003212.1 1653589 1654113 R similar to general stress protein; hypothetical protein complement(1653589..1654113) Listeria innocua Clip11262 1130267 NP_470979.1 CDS lin1643 NC_003212.1 1654135 1654590 R hypothetical protein complement(1654135..1654590) Listeria innocua Clip11262 1130268 NP_470980.1 CDS lin1644 NC_003212.1 1654848 1655960 D similar to aminopeptidase; hypothetical protein 1654848..1655960 Listeria innocua Clip11262 1130269 NP_470981.1 CDS lin1645 NC_003212.1 1656000 1656545 R similar to 2-cys peroxiredoxin; hypothetical protein complement(1656000..1656545) Listeria innocua Clip11262 1130270 NP_470982.1 CDS murC NC_003212.1 1656690 1658033 R similar to UDP-N-acetyl muramate-alanine ligases; Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(1656690..1658033) Listeria innocua Clip11262 1130271 NP_470983.1 CDS lin1647 NC_003212.1 1658329 1660683 R similar to DNA translocase; hypothetical protein complement(1658329..1660683) Listeria innocua Clip11262 1130272 NP_470984.1 CDS lin1648 NC_003212.1 1660992 1661609 R similar phenylalanyl-tRNA synthetase (beta subunit); hypothetical protein complement(1660992..1661609) Listeria innocua Clip11262 1130273 NP_470985.1 CDS lin1649 NC_003212.1 1661615 1662415 R hypothetical protein complement(1661615..1662415) Listeria innocua Clip11262 1130274 NP_470986.1 CDS lin1650 NC_003212.1 1662450 1662761 R similar to thioredoxin; hypothetical protein complement(1662450..1662761) Listeria innocua Clip11262 1130276 NP_470987.1 CDS lin1651 NC_003212.1 1662875 1663093 R hypothetical protein complement(1662875..1663093) Listeria innocua Clip11262 1130277 NP_470988.1 CDS lin1652 NC_003212.1 1663086 1664159 R similar to aminopeptidase; hypothetical protein complement(1663086..1664159) Listeria innocua Clip11262 1130278 NP_470989.1 CDS lin1653 NC_003212.1 1664356 1664667 D hypothetical protein 1664356..1664667 Listeria innocua Clip11262 1130279 NP_470990.1 CDS lin1654 NC_003212.1 1664704 1664952 R hypothetical protein complement(1664704..1664952) Listeria innocua Clip11262 1130280 NP_470991.1 CDS lin1655 NC_003212.1 1665086 1665934 R hypothetical protein complement(1665086..1665934) Listeria innocua Clip11262 1130281 NP_470992.1 CDS trmB NC_003212.1 1665996 1666640 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(1665996..1666640) Listeria innocua Clip11262 1130282 NP_470993.1 CDS lin1657 NC_003212.1 1666647 1667429 R hypothetical protein complement(1666647..1667429) Listeria innocua Clip11262 1130283 NP_470994.1 CDS lin1658 NC_003212.1 1667633 1669102 R similar to multidrug-efflux transporter; hypothetical protein complement(1667633..1669102) Listeria innocua Clip11262 1130285 NP_470995.1 CDS lin1659 NC_003212.1 1669105 1669545 R similar to transcription regulator MarR family; hypothetical protein complement(1669105..1669545) Listeria innocua Clip11262 1130286 NP_470996.1 CDS daaA NC_003212.1 1669769 1670638 R D-amino acid aminotransferase complement(1669769..1670638) Listeria innocua Clip11262 1130288 NP_470997.1 CDS lin1661 NC_003212.1 1670751 1672163 R similar to Xaa-His dipeptidase; divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV complement(1670751..1672163) Listeria innocua Clip11262 1130289 NP_470998.1 CDS lin1662 NC_003212.1 1672237 1672650 R weakly similar to Escherichia coli MutT protein (dGTP pyrophosphohydrolase; hypothetical protein complement(1672237..1672650) Listeria innocua Clip11262 1130290 NP_470999.1 CDS lin1663 NC_003212.1 1672755 1673585 D hypothetical protein 1672755..1673585 Listeria innocua Clip11262 1130291 NP_471000.1 CDS lin1664 NC_003212.1 1673622 1674275 R hypothetical protein complement(1673622..1674275) Listeria innocua Clip11262 1130292 NP_471001.1 CDS lin1665 NC_003212.1 1674285 1675898 R similar to putative transporters; hypothetical protein complement(1674285..1675898) Listeria innocua Clip11262 1130293 NP_471002.1 CDS lin1666 NC_003212.1 1676009 1677622 R similar to putative transporters; hypothetical protein complement(1676009..1677622) Listeria innocua Clip11262 1130294 NP_471003.1 CDS lin1667 NC_003212.1 1677707 1678144 R lin1667; hypothetical protein complement(1677707..1678144) Listeria innocua Clip11262 1130295 NP_471004.1 CDS trpA NC_003212.1 1678215 1678988 R highly similar to tryptophan synthase (alpha subunit); catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(1678215..1678988) Listeria innocua Clip11262 1130296 NP_471005.1 CDS lin1669 NC_003212.1 1678981 1680183 R highly similar to tryptophan synthase (beta subunit); catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(1678981..1680183) Listeria innocua Clip11262 1130297 NP_471006.1 CDS trpF NC_003212.1 1680183 1680794 R catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase complement(1680183..1680794) Listeria innocua Clip11262 1130299 NP_471007.1 CDS trpC NC_003212.1 1680791 1681549 R highly similar to indol-3-glycerol phosphate synthases; involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase complement(1680791..1681549) Listeria innocua Clip11262 1130301 NP_471008.1 CDS trpD NC_003212.1 1681546 1682565 R highly similar to anthranilate phosphoribosyltransferase; Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(1681546..1682565) Listeria innocua Clip11262 1130303 NP_471009.1 CDS lin1673 NC_003212.1 1682537 1683142 R highly similar to anthranilate synthase beta subunit; TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II complement(1682537..1683142) Listeria innocua Clip11262 1130304 NP_471010.1 CDS lin1674 NC_003212.1 1683139 1684503 R highly similar to anthranilate synthase alpha subunit; with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I complement(1683139..1684503) Listeria innocua Clip11262 1130305 NP_471011.1 CDS lin1675 NC_003212.1 1685574 1688174 D similar to Alcohol-acetaldehyde dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1685574..1688174 Listeria innocua Clip11262 1130306 NP_471012.1 CDS lin1676 NC_003212.1 1688298 1688726 D hypothetical protein 1688298..1688726 Listeria innocua Clip11262 1130307 NP_471013.1 CDS lin1677 NC_003212.1 1688810 1689730 D similar to similar to ABC transporter (ATP-binding protein); hypothetical protein 1688810..1689730 Listeria innocua Clip11262 1130308 NP_471014.1 CDS lin1678 NC_003212.1 1689727 1690794 D similar to membrane proteins; hypothetical protein 1689727..1690794 Listeria innocua Clip11262 1130310 NP_471015.1 CDS lin1679 NC_003212.1 1690834 1691808 R hypothetical protein complement(1690834..1691808) Listeria innocua Clip11262 1130311 NP_471016.1 CDS lin1680 NC_003212.1 1691808 1692389 R similar to dna-3-methyladenine glycosidase; hypothetical protein complement(1691808..1692389) Listeria innocua Clip11262 1130312 NP_471017.1 CDS lin1681 NC_003212.1 1692402 1692635 R lin1681; hypothetical protein complement(1692402..1692635) Listeria innocua Clip11262 1130314 NP_471018.1 CDS lin1682 NC_003212.1 1692739 1695441 R highly similar to aconitate hydratases; Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(1692739..1695441) Listeria innocua Clip11262 1130315 NP_471019.1 CDS lin1683 NC_003212.1 1695596 1696399 R similar to putative sigma factor regulator; hypothetical protein complement(1695596..1696399) Listeria innocua Clip11262 1130316 NP_471020.1 CDS lin1684 NC_003212.1 1696423 1696845 R lin1684; hypothetical protein complement(1696423..1696845) Listeria innocua Clip11262 1130317 NP_471021.1 CDS lin1685 NC_003212.1 1696845 1700063 R similar to SNF2-type helicase; hypothetical protein complement(1696845..1700063) Listeria innocua Clip11262 1130318 NP_471022.1 CDS lin1686 NC_003212.1 1700147 1703218 R similar to ATP-dependent dsDNA exonuclease SbcC; hypothetical protein complement(1700147..1703218) Listeria innocua Clip11262 1130320 NP_471023.1 CDS lin1687 NC_003212.1 1703215 1704339 R similar to putative exonucleases SbcD; hypothetical protein complement(1703215..1704339) Listeria innocua Clip11262 1130321 NP_471024.1 CDS lin1688 NC_003212.1 1704455 1705063 D similar to 1-acylglycerol-3-phosphate O-acyltransferases; hypothetical protein 1704455..1705063 Listeria innocua Clip11262 1130323 NP_471025.1 CDS lin1689 NC_003212.1 1705105 1705620 R lin1689; hypothetical protein complement(1705105..1705620) Listeria innocua Clip11262 1130324 NP_471026.1 CDS lin1690 NC_003212.1 1705794 1706282 R hypothetical protein complement(1705794..1706282) Listeria innocua Clip11262 1130325 NP_471027.1 CDS lin1691 NC_003212.1 1706363 1708168 R similar to ABC transporter (ATP-binding protein); hypothetical protein complement(1706363..1708168) Listeria innocua Clip11262 1130326 NP_471028.1 CDS lin1692 NC_003212.1 1708152 1709921 R similar to ABC transporter (ATP-binding protein); hypothetical protein complement(1708152..1709921) Listeria innocua Clip11262 1130327 NP_471029.1 CDS lin1693 NC_003212.1 1710335 1710955 R putative cellsurface protein complement(1710335..1710955) Listeria innocua Clip11262 1130329 NP_471030.1 CDS lin1694 NC_003212.1 1710971 1711465 R putative cellsurface protein complement(1710971..1711465) Listeria innocua Clip11262 1130330 NP_471031.1 CDS lin1695 NC_003212.1 1711643 1712281 R hypothetical protein complement(1711643..1712281) Listeria innocua Clip11262 1130331 NP_471032.1 CDS lin1696 NC_003212.1 1712668 1712907 R lin1696; hypothetical protein complement(1712668..1712907) Listeria innocua Clip11262 1130332 NP_471033.1 CDS lin1697 NC_003212.1 1713958 1714335 D protein gp30 [Bacteriophage A118]; protein gp30 1713958..1714335 Listeria innocua Clip11262 1130333 NP_471034.1 CDS lin1698 NC_003212.1 1714369 1714719 D protein gp29 [Bacteriophage A118]; protein gp29 1714369..1714719 Listeria innocua Clip11262 1130334 NP_471035.1 CDS lin1699 NC_003212.1 1714724 1715173 D Portein gp28 [Bacteriophage A118]; protein gp28 1714724..1715173 Listeria innocua Clip11262 1130335 NP_471036.1 CDS lin1700 NC_003212.1 1715216 1716142 R similar to N-acetylmuramoyl-L-alanine amidase (N-terminal part) and to L-alanoyl-D-glutamate peptidase (C-terminal part); hypothetical protein complement(1715216..1716142) Listeria innocua Clip11262 1130336 NP_471037.1 CDS lin1701 NC_003212.1 1716145 1716378 R lin1701; hypothetical protein complement(1716145..1716378) Listeria innocua Clip11262 1130337 NP_471038.1 CDS lin1702 NC_003212.1 1716378 1716638 R similar to holin from bacteriophage; hypothetical protein complement(1716378..1716638) Listeria innocua Clip11262 1130340 NP_471039.1 CDS lin1703 NC_003212.1 1716649 1716864 R lin1703; hypothetical protein complement(1716649..1716864) Listeria innocua Clip11262 1130342 NP_471040.1 CDS lin1704 NC_003212.1 1716883 1717329 R lin1704; hypothetical protein complement(1716883..1717329) Listeria innocua Clip11262 1130343 NP_471041.1 CDS lin1705 NC_003212.1 1717305 1717751 R lin1705; hypothetical protein complement(1717305..1717751) Listeria innocua Clip11262 1130344 NP_471042.1 CDS lin1706 NC_003212.1 1717783 1717908 R similar to protein gp22 [Bacteriophage A118]; hypothetical protein complement(1717783..1717908) Listeria innocua Clip11262 1130346 NP_471043.1 CDS lin1707 NC_003212.1 1717938 1718279 R lin1707; hypothetical protein complement(1717938..1718279) Listeria innocua Clip11262 1130347 NP_471044.1 CDS lin1708 NC_003212.1 1718285 1719013 R lin1708; hypothetical protein complement(1718285..1719013) Listeria innocua Clip11262 1130348 NP_471045.1 CDS lin1709 NC_003212.1 1719034 1719675 R lin1709; hypothetical protein complement(1719034..1719675) Listeria innocua Clip11262 1130350 NP_471046.1 CDS lin1710 NC_003212.1 1719665 1720816 R hypothetical protein complement(1719665..1720816) Listeria innocua Clip11262 1130351 NP_471047.1 CDS lin1711 NC_003212.1 1720809 1721171 R lin1711; hypothetical protein complement(1720809..1721171) Listeria innocua Clip11262 1130353 NP_471048.1 CDS lin1712 NC_003212.1 1721168 1721506 R lin1712; hypothetical protein complement(1721168..1721506) Listeria innocua Clip11262 1130355 NP_471049.1 CDS lin1713 NC_003212.1 1721507 1722313 R lin1713; hypothetical protein complement(1721507..1722313) Listeria innocua Clip11262 1130357 NP_471050.1 CDS lin1714 NC_003212.1 1722313 1722678 R lin1714; hypothetical protein complement(1722313..1722678) Listeria innocua Clip11262 1130359 NP_471051.1 CDS lin1715 NC_003212.1 1722678 1723241 R lin1715; hypothetical protein complement(1722678..1723241) Listeria innocua Clip11262 1130361 NP_471052.1 CDS lin1716 NC_003212.1 1723247 1727962 R similar to minor capsid protein 1608 - Lactobacillus phage phi-gle; hypothetical protein complement(1723247..1727962) Listeria innocua Clip11262 1130363 NP_471053.1 CDS lin1717 NC_003212.1 1727964 1728176 R lin1717; hypothetical protein complement(1727964..1728176) Listeria innocua Clip11262 1130365 NP_471054.1 CDS lin1718 NC_003212.1 1728139 1728495 R lin1718; hypothetical protein complement(1728139..1728495) Listeria innocua Clip11262 1130367 NP_471055.1 CDS lin1719 NC_003212.1 1728548 1728946 R lin1719; hypothetical protein complement(1728548..1728946) Listeria innocua Clip11262 1130369 NP_471056.1 CDS lin1720 NC_003212.1 1728963 1729958 R weakly similar to hypothetical protein of bacteriophage Felix 01; hypothetical protein complement(1728963..1729958) Listeria innocua Clip11262 1130370 NP_471057.1 CDS lin1721 NC_003212.1 1729963 1730451 R lin1721; hypothetical protein complement(1729963..1730451) Listeria innocua Clip11262 1130371 NP_471058.1 CDS lin1722 NC_003212.1 1730441 1730815 R lin1722; hypothetical protein complement(1730441..1730815) Listeria innocua Clip11262 1130373 NP_471059.1 CDS lin1723 NC_003212.1 1730815 1731414 R lin1723; hypothetical protein complement(1730815..1731414) Listeria innocua Clip11262 1130375 NP_471060.1 CDS lin1724 NC_003212.1 1731414 1731749 R lin1724; hypothetical protein complement(1731414..1731749) Listeria innocua Clip11262 1130377 NP_471061.1 CDS lin1725 NC_003212.1 1731761 1732147 R lin1725; hypothetical protein complement(1731761..1732147) Listeria innocua Clip11262 1130378 NP_471062.1 CDS lin1726 NC_003212.1 1732170 1733075 R hypothetical protein complement(1732170..1733075) Listeria innocua Clip11262 1130379 NP_471063.1 CDS lin1727 NC_003212.1 1733096 1733545 R lin1727; hypothetical protein complement(1733096..1733545) Listeria innocua Clip11262 1130380 NP_471064.1 CDS lin1728 NC_003212.1 1733545 1734654 R hypothetical protein complement(1733545..1734654) Listeria innocua Clip11262 1130381 NP_471065.1 CDS lin1729 NC_003212.1 1734703 1734873 R lin1729; hypothetical protein complement(1734703..1734873) Listeria innocua Clip11262 1130383 NP_471066.1 CDS lin1730 NC_003212.1 1734870 1736279 R some similarities to plasmid-related proteins; hypothetical protein complement(1734870..1736279) Listeria innocua Clip11262 1130385 NP_471067.1 CDS lin1731 NC_003212.1 1736272 1737657 R some similarities to conserved hypothetical proteins; hypothetical protein complement(1736272..1737657) Listeria innocua Clip11262 1130387 NP_471068.1 CDS lin1732 NC_003212.1 1737671 1739131 R some similarities to phage related proteins; hypothetical protein complement(1737671..1739131) Listeria innocua Clip11262 1130389 NP_471069.1 CDS lin1733 NC_003212.1 1739109 1739993 R weakly similar to phage related proteins; hypothetical protein complement(1739109..1739993) Listeria innocua Clip11262 1130390 NP_471070.1 CDS lin1734 NC_003212.1 1740039 1740263 R lin1734; hypothetical protein complement(1740039..1740263) Listeria innocua Clip11262 1130392 NP_471071.1 CDS lin1735 NC_003212.1 1740291 1740521 R lin1735; hypothetical protein complement(1740291..1740521) Listeria innocua Clip11262 1130393 NP_471072.1 CDS lin1736 NC_003212.1 1740652 1740849 R lin1736; hypothetical protein complement(1740652..1740849) Listeria innocua Clip11262 1130394 NP_471073.1 CDS lin1737 NC_003212.1 1740897 1742234 R weakly similar to methyltransferases; hypothetical protein complement(1740897..1742234) Listeria innocua Clip11262 1130395 NP_471074.1 CDS lin1738 NC_003212.1 1743052 1743819 R similar to a putative antirepressor [Bacteriophage SPBc2]; hypothetical protein complement(1743052..1743819) Listeria innocua Clip11262 1130396 NP_471075.1 CDS lin1739 NC_003212.1 1743832 1744257 R similar to protein gp66 of Bacteriophage A118; hypothetical protein complement(1743832..1744257) Listeria innocua Clip11262 1130398 NP_471076.1 CDS lin1740 NC_003212.1 1744335 1744895 R similar to hypothetical protein of Lactobacillus phage phi-gle; hypothetical protein complement(1744335..1744895) Listeria innocua Clip11262 1130399 NP_471077.1 CDS lin1741 NC_003212.1 1744907 1745158 R similar to hypothetical protein from phage P2; hypothetical protein complement(1744907..1745158) Listeria innocua Clip11262 1130400 NP_471078.1 CDS lin1742 NC_003212.1 1745742 1746422 R lin1742; hypothetical protein complement(1745742..1746422) Listeria innocua Clip11262 1130401 NP_471079.1 CDS lin1743 NC_003212.1 1746435 1747379 R similar to phage intagrase proteins; hypothetical protein complement(1746435..1747379) Listeria innocua Clip11262 1130402 NP_471080.1 CDS lin1744 NC_003212.1 1747616 1748977 R lin1744; hypothetical protein complement(1747616..1748977) Listeria innocua Clip11262 1130403 NP_471081.1 CDS lin1745 NC_003212.1 1748974 1749396 R lin1745; hypothetical protein complement(1748974..1749396) Listeria innocua Clip11262 1130404 NP_471082.1 CDS lin1746 NC_003212.1 1749408 1749584 R lin1746; hypothetical protein complement(1749408..1749584) Listeria innocua Clip11262 1130405 NP_471083.1 CDS lin1747 NC_003212.1 1749544 1749921 R lin1747; hypothetical protein complement(1749544..1749921) Listeria innocua Clip11262 1130406 NP_471084.1 CDS lin1748 NC_003212.1 1749962 1750582 R lin1748; hypothetical protein complement(1749962..1750582) Listeria innocua Clip11262 1130408 NP_471085.1 CDS lin1749 NC_003212.1 1750604 1751041 R similar to hypothetical protein, Staphylococcus aureus phage phi PVL; hypothetical protein complement(1750604..1751041) Listeria innocua Clip11262 1130409 NP_471086.1 CDS lin1750 NC_003212.1 1751022 1751261 R lin1750; hypothetical protein complement(1751022..1751261) Listeria innocua Clip11262 1130410 NP_471087.1 CDS lin1751 NC_003212.1 1751218 1751445 R lin1751; hypothetical protein complement(1751218..1751445) Listeria innocua Clip11262 1130412 NP_471088.1 CDS lin1752 NC_003212.1 1751623 1752486 R similarities Staphylococcus aureus prophage phiPV83; hypothetical protein complement(1751623..1752486) Listeria innocua Clip11262 1130414 NP_471089.1 CDS lin1753 NC_003212.1 1752362 1753279 R lin1753; hypothetical protein complement(1752362..1753279) Listeria innocua Clip11262 1130415 NP_471090.1 CDS lin1754 NC_003212.1 1753291 1754049 R similar to hypothetical protein 44 - Staphylococcus aureus phage phi PVL; hypothetical protein complement(1753291..1754049) Listeria innocua Clip11262 1130417 NP_471091.1 CDS lin1755 NC_003212.1 1753988 1754770 R some similarities to phage related proteins; hypothetical protein complement(1753988..1754770) Listeria innocua Clip11262 1130418 NP_471092.1 CDS lin1756 NC_003212.1 1754774 1756756 R similar to hypothetical protein of Staphylococcus aureus phage phi PVL; hypothetical protein complement(1754774..1756756) Listeria innocua Clip11262 1130419 NP_471093.1 CDS lin1757 NC_003212.1 1756701 1757042 R lin1757; hypothetical protein complement(1756701..1757042) Listeria innocua Clip11262 1130421 NP_471094.1 CDS lin1758 NC_003212.1 1757060 1757287 R lin1758; hypothetical protein complement(1757060..1757287) Listeria innocua Clip11262 1130423 NP_471095.1 CDS lin1759 NC_003212.1 1757465 1757755 R lin1759; hypothetical protein complement(1757465..1757755) Listeria innocua Clip11262 1130424 NP_471096.1 CDS lin1760 NC_003212.1 1758382 1758906 R similar to protein gp43 [Bacteriophage A118]; hypothetical protein complement(1758382..1758906) Listeria innocua Clip11262 1130425 NP_471097.1 CDS lin1761 NC_003212.1 1758978 1759202 R similar to transcription regulator; hypothetical protein complement(1758978..1759202) Listeria innocua Clip11262 1130426 NP_471098.1 CDS lin1762 NC_003212.1 1759363 1759803 D similar to immunity repressor protein - Bacillus phage phi-105; hypothetical protein 1759363..1759803 Listeria innocua Clip11262 1130427 NP_471099.1 CDS lin1763 NC_003212.1 1759826 1760248 D similar to ORF2 [bacteriophage phi-105]; hypothetical protein 1759826..1760248 Listeria innocua Clip11262 1130428 NP_471100.1 CDS lin1764 NC_003212.1 1760284 1760832 D hypothetical protein 1760284..1760832 Listeria innocua Clip11262 1130429 NP_471101.1 CDS lin1765 NC_003212.1 1760914 1762089 D similar to integrase; hypothetical protein 1760914..1762089 Listeria innocua Clip11262 1130430 NP_471102.1 CDS tsf NC_003212.1 1762250 1763134 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(1762250..1763134) Listeria innocua Clip11262 1130431 NP_471103.1 CDS rpsB NC_003212.1 1763214 1763963 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(1763214..1763963) Listeria innocua Clip11262 1130432 NP_471104.1 CDS lin1768 NC_003212.1 1764158 1764535 R similar to Antigen C; hypothetical protein complement(1764158..1764535) Listeria innocua Clip11262 1130433 NP_471105.1 CDS leuS NC_003212.1 1764667 1767078 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(1764667..1767078) Listeria innocua Clip11262 1130434 NP_471106.1 CDS lin1770 NC_003212.1 1767482 1768447 D hypothetical protein 1767482..1768447 Listeria innocua Clip11262 1130435 NP_471107.1 CDS lin1771 NC_003212.1 1768444 1769019 D similar to conserved hypothetical protein; hypothetical protein 1768444..1769019 Listeria innocua Clip11262 1130437 NP_471108.1 CDS lin1772 NC_003212.1 1769045 1770910 R similar to asparagine synthetase; hypothetical protein complement(1769045..1770910) Listeria innocua Clip11262 1130438 NP_471109.1 CDS lin1773 NC_003212.1 1771047 1772246 R methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(1771047..1772246) Listeria innocua Clip11262 1130439 NP_471110.1 CDS lin1774 NC_003212.1 1772657 1772959 D lin1774; hypothetical protein 1772657..1772959 Listeria innocua Clip11262 1130440 NP_471111.1 CDS lin1775 NC_003212.1 1773026 1773934 R similar to L-lactate dehydrogenases; hypothetical protein complement(1773026..1773934) Listeria innocua Clip11262 1130441 NP_471112.1 CDS lin1776 NC_003212.1 1773951 1774193 R some similarity to hypothetical proteins; hypothetical protein complement(1773951..1774193) Listeria innocua Clip11262 1130442 NP_471113.1 CDS lin1777 NC_003212.1 1774244 1774717 R some similarity to hypothetical proteins; hypothetical protein complement(1774244..1774717) Listeria innocua Clip11262 1130443 NP_471114.1 CDS lin1778 NC_003212.1 1774791 1775057 D hypothetical protein 1774791..1775057 Listeria innocua Clip11262 1130444 NP_471115.1 CDS lin1779 NC_003212.1 1775206 1776159 D similar to ABC transporter and adhesion proteins; hypothetical protein 1775206..1776159 Listeria innocua Clip11262 1130445 NP_471116.1 CDS lin1780 NC_003212.1 1776179 1777588 R similar to O-succinylbenzoic acid-CoA ligase; converts O-succinylbenzoate to O-succinylbenzoyl-CoA; O-succinylbenzoic acid--CoA ligase complement(1776179..1777588) Listeria innocua Clip11262 1130446 NP_471117.1 CDS lin1781 NC_003212.1 1777604 1778422 R similar to dihydroxynapthoic acid synthetase; catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase complement(1777604..1778422) Listeria innocua Clip11262 1130447 NP_471118.1 CDS lin1782 NC_003212.1 1778419 1779246 R similar to prolyl aminopetidases; hypothetical protein complement(1778419..1779246) Listeria innocua Clip11262 1130448 NP_471119.1 CDS lin1783 NC_003212.1 1779248 1780990 R similar to 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / 2-oxoglutarate decarboxylase; SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase complement(1779248..1780990) Listeria innocua Clip11262 1130450 NP_471120.1 CDS lin1784 NC_003212.1 1780987 1782375 R similar to menaquinone-specific isochorismate synthase; synthesizes isochorismate acid from chorismate; menaquinone-specific isochorismate synthase complement(1780987..1782375) Listeria innocua Clip11262 1130451 NP_471121.1 CDS lin1785 NC_003212.1 1782550 1783488 D similar to menaquinone biosynthesis proteins; catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 1782550..1783488 Listeria innocua Clip11262 1130452 NP_471122.1 CDS lin1786 NC_003212.1 1783521 1785374 R similar to 5-methyltetrahydrofolate-homocysteine methyltransferase (metH); catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine; expressed in B. subtilis under methionine starvation conditions; bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein complement(1783521..1785374) Listeria innocua Clip11262 1130453 NP_471123.1 CDS lin1787 NC_003212.1 1785371 1786543 R similar to cystathionine beta-lyase; catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase complement(1785371..1786543) Listeria innocua Clip11262 1130454 NP_471124.1 CDS lin1788 NC_003212.1 1786536 1787660 R similar to cystathionine gamma-synthase; hypothetical protein complement(1786536..1787660) Listeria innocua Clip11262 1130456 NP_471125.1 CDS lin1789 NC_003212.1 1787682 1789979 R similar to cobalamin-independent methionine synthase; catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase complement(1787682..1789979) Listeria innocua Clip11262 1130458 NP_471126.1 CDS lin1790 NC_003212.1 1790287 1791444 R similar to transmembrane transport proteins; hypothetical protein complement(1790287..1791444) Listeria innocua Clip11262 1130459 NP_471127.1 CDS lin1791 NC_003212.1 1798876 1799322 R similar to transcription regulators (Fur family), PerR in Bacillus subtilis; hypothetical protein complement(1798876..1799322) Listeria innocua Clip11262 1130463 NP_471128.1 CDS lin1792 NC_003212.1 1799405 1800346 R similar to glycerate dehydrogenases; hypothetical protein complement(1799405..1800346) Listeria innocua Clip11262 1130464 NP_471129.1 CDS gsaB NC_003212.1 1800489 1801787 D converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate; glutamate-1-semialdehyde aminotransferase 1800489..1801787 Listeria innocua Clip11262 1130465 NP_471130.1 CDS lin1794 NC_003212.1 1801893 1802981 D hypothetical protein 1801893..1802981 Listeria innocua Clip11262 1130466 NP_471131.1 CDS lin1795 NC_003212.1 1803022 1803549 R hypothetical protein complement(1803022..1803549) Listeria innocua Clip11262 1130467 NP_471132.1 CDS lin1796 NC_003212.1 1803704 1804450 R similar to glucose 1-dehydrogenase; Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase complement(1803704..1804450) Listeria innocua Clip11262 1130468 NP_471133.1 CDS lin1797 NC_003212.1 1804454 1805551 R similar to A/G-specific adenine glycosylase; hypothetical protein complement(1804454..1805551) Listeria innocua Clip11262 1130469 NP_471134.1 CDS lin1798 NC_003212.1 1805751 1806731 D hypothetical protein 1805751..1806731 Listeria innocua Clip11262 1130471 NP_471135.1 CDS lin1799 NC_003212.1 1806763 1807224 R similar to deoxyuridine triphosphate nucleotidohydrolases; hypothetical protein complement(1806763..1807224) Listeria innocua Clip11262 1130472 NP_471136.1 CDS lin1800 NC_003212.1 1807236 1807469 R lin1800; hypothetical protein complement(1807236..1807469) Listeria innocua Clip11262 1130473 NP_471137.1 CDS recX NC_003212.1 1807471 1808280 R Regulatory protein recX; binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(1807471..1808280) Listeria innocua Clip11262 1130474 NP_471138.1 CDS lin1802 NC_003212.1 1808378 1809280 D similar to CDP-abequose synthase; hypothetical protein 1808378..1809280 Listeria innocua Clip11262 1130476 NP_471139.1 CDS lin1803 NC_003212.1 1809298 1811895 R similar to putative membrane proteins; hypothetical protein complement(1809298..1811895) Listeria innocua Clip11262 1130477 NP_471140.1 CDS lin1804 NC_003212.1 1811921 1812595 R hypothetical protein complement(1811921..1812595) Listeria innocua Clip11262 1130478 NP_471141.1 CDS lin1805 NC_003212.1 1812803 1813768 D similar to putative transmembrane proteins; hypothetical protein 1812803..1813768 Listeria innocua Clip11262 1130479 NP_471142.1 CDS lin1806 NC_003212.1 1813813 1814355 R similar to ribosomal-protein-alanine N-acetyltransferase; hypothetical protein complement(1813813..1814355) Listeria innocua Clip11262 1130480 NP_471143.1 CDS lin1807 NC_003212.1 1814546 1815448 D some similarities to methyl-accepting chemotaxis proteins; hypothetical protein 1814546..1815448 Listeria innocua Clip11262 1130481 NP_471144.1 CDS lin1808 NC_003212.1 1815476 1815682 D lin1808; hypothetical protein 1815476..1815682 Listeria innocua Clip11262 1130482 NP_471145.1 CDS lin1809 NC_003212.1 1815717 1816070 R lin1809; hypothetical protein complement(1815717..1816070) Listeria innocua Clip11262 1130483 NP_471146.1 CDS lin1810 NC_003212.1 1816091 1816492 R similar to glutathione transferase - fosfomycin resistance protein; hypothetical protein complement(1816091..1816492) Listeria innocua Clip11262 1130484 NP_471147.1 CDS lin1811 NC_003212.1 1816563 1817534 R hypothetical protein complement(1816563..1817534) Listeria innocua Clip11262 1130485 NP_471148.1 CDS lin1813 NC_003212.1 1817978 1819840 R similar to excinuclease ABC subunit A; hypothetical protein complement(1817978..1819840) Listeria innocua Clip11262 1130488 NP_471149.1 CDS lin1814 NC_003212.1 1819857 1820762 R similar to putative AraC-type regulators; hypothetical protein complement(1819857..1820762) Listeria innocua Clip11262 1130489 NP_471150.1 CDS lin1815 NC_003212.1 1821029 1822402 R similar to similar to RNA methyltransferases; hypothetical protein complement(1821029..1822402) Listeria innocua Clip11262 1130490 NP_471151.1 CDS lin1816 NC_003212.1 1822467 1822847 R hypothetical protein complement(1822467..1822847) Listeria innocua Clip11262 1130491 NP_471152.1 CDS lin1817 NC_003212.1 1822953 1823597 D similar to deoxyguanosine kinase/deoxyadenosine kinase(I) subunit; hypothetical protein 1822953..1823597 Listeria innocua Clip11262 1130492 NP_471153.1 CDS lin1818 NC_003212.1 1823625 1824494 R similar to transport proteins; hypothetical protein complement(1823625..1824494) Listeria innocua Clip11262 1130493 NP_471154.1 CDS lin1819 NC_003212.1 1824585 1824806 D lin1819; hypothetical protein 1824585..1824806 Listeria innocua Clip11262 1130494 NP_471155.1 CDS lin1820 NC_003212.1 1824826 1825632 R similar to aminoglycoside N3'-acetyltransferases; hypothetical protein complement(1824826..1825632) Listeria innocua Clip11262 1130495 NP_471156.1 CDS lin1821 NC_003212.1 1825761 1826519 R similar to methionine aminopeptidases; catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(1825761..1826519) Listeria innocua Clip11262 1130496 NP_471157.1 CDS lin1822 NC_003212.1 1826709 1827155 D similar to putative flavodoxin; hypothetical protein 1826709..1827155 Listeria innocua Clip11262 1130497 NP_471158.1 CDS lin1823 NC_003212.1 1827293 1828525 D highly similar to aminopeptidases; hypothetical protein 1827293..1828525 Listeria innocua Clip11262 1130498 NP_471159.1 CDS lin1824 NC_003212.1 1828628 1829887 D similar to multidrug resistance protein, integral membrane protein; hypothetical protein 1828628..1829887 Listeria innocua Clip11262 1130499 NP_471160.1 CDS lin1825 NC_003212.1 1830107 1831099 D similar to cell-shape determining proteins; rod shape-determining protein MreB 1830107..1831099 Listeria innocua Clip11262 1130500 NP_471161.1 CDS lin1826 NC_003212.1 1831362 1832027 R hypothetical protein complement(1831362..1832027) Listeria innocua Clip11262 1130501 NP_471162.1 CDS lin1827 NC_003212.1 1832228 1832803 D similar to putative transcription regulators; hypothetical protein 1832228..1832803 Listeria innocua Clip11262 1130502 NP_471163.1 CDS lin1828 NC_003212.1 1832886 1833953 R hypothetical protein complement(1832886..1833953) Listeria innocua Clip11262 1130503 NP_471164.1 CDS lin1829 NC_003212.1 1834185 1835270 R similar to putative outer surface protein; hypothetical protein complement(1834185..1835270) Listeria innocua Clip11262 1130504 NP_471165.1 CDS lin1830 NC_003212.1 1835292 1835594 R similar to phosphotransferase system (PTS) lichenan-specific enzyme IIA component; hypothetical protein complement(1835292..1835594) Listeria innocua Clip11262 1130505 NP_471166.1 CDS lin1831 NC_003212.1 1835664 1835972 R similar to phosphotransferase system (PTS) lichenan-specific enzyme IIB component; hypothetical protein complement(1835664..1835972) Listeria innocua Clip11262 1130506 NP_471167.1 CDS lin1832 NC_003212.1 1836130 1838808 R similar to transcriptional regulator (NifA/NtrC family); hypothetical protein complement(1836130..1838808) Listeria innocua Clip11262 1130507 NP_471168.1 CDS lin1833 NC_003212.1 1838943 1840271 R similar to ATP-dependent RNA helicases; hypothetical protein complement(1838943..1840271) Listeria innocua Clip11262 1130508 NP_471169.1 CDS lin1834 NC_003212.1 1840314 1841087 R lin1834; hypothetical protein complement(1840314..1841087) Listeria innocua Clip11262 1130509 NP_471170.1 CDS lin1835 NC_003212.1 1841080 1841760 R similar to ABC transporter, ATP-binding protein; hypothetical protein complement(1841080..1841760) Listeria innocua Clip11262 1130510 NP_471171.1 CDS lin1836 NC_003212.1 1841753 1842121 R similar to transcriptional regulator (GntR family); hypothetical protein complement(1841753..1842121) Listeria innocua Clip11262 1130512 NP_471172.1 CDS lin1837 NC_003212.1 1842242 1843225 R hypothetical protein complement(1842242..1843225) Listeria innocua Clip11262 1130514 NP_471173.1 CDS lin1838 NC_003212.1 1843285 1844250 R similar to transcription regulators (LacI family); hypothetical protein complement(1843285..1844250) Listeria innocua Clip11262 1130515 NP_471174.1 CDS lin1839 NC_003212.1 1844298 1847558 R some similarities to cellobiose-phosphorylase; hypothetical protein complement(1844298..1847558) Listeria innocua Clip11262 1130516 NP_471175.1 CDS lin1840 NC_003212.1 1847555 1849726 R similar to beta-glucosidases; hypothetical protein complement(1847555..1849726) Listeria innocua Clip11262 1130517 NP_471176.1 CDS lin1841 NC_003212.1 1850155 1851399 D similar to sugar ABC transporter binding protein; hypothetical protein 1850155..1851399 Listeria innocua Clip11262 1130518 NP_471177.1 CDS lin1842 NC_003212.1 1851460 1852353 D similar to sugar ABC transporter, permease protein; hypothetical protein 1851460..1852353 Listeria innocua Clip11262 1130519 NP_471178.1 CDS lin1843 NC_003212.1 1852371 1853201 D similar to sugar ABC transporter, permease protein; hypothetical protein 1852371..1853201 Listeria innocua Clip11262 1130520 NP_471179.1 CDS gltD NC_003212.1 1853247 1854716 R similar to glutamate synthase (small subunit); glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta complement(1853247..1854716) Listeria innocua Clip11262 1130521 NP_471180.1 CDS lin1845 NC_003212.1 1854731 1859323 R similar to glutamate synthase (large subunit); hypothetical protein complement(1854731..1859323) Listeria innocua Clip11262 1130522 NP_471181.1 CDS gltC NC_003212.1 1859518 1860405 D transcription activator of glutamate synthase operon GltC 1859518..1860405 Listeria innocua Clip11262 1130523 NP_471182.1 CDS lin1847 NC_003212.1 1860402 1860920 R hypothetical protein complement(1860402..1860920) Listeria innocua Clip11262 1130525 NP_471183.1 CDS lin1848 NC_003212.1 1860923 1862029 R similar to glycerol dehydrogenase; hypothetical protein complement(1860923..1862029) Listeria innocua Clip11262 1130526 NP_471184.1 CDS lin1849 NC_003212.1 1862121 1862936 R similar to amino acid ABC transporter (binding protein); hypothetical protein complement(1862121..1862936) Listeria innocua Clip11262 1130527 NP_471185.1 CDS lin1850 NC_003212.1 1862938 1863585 R similar to amino acid (glutamine) ABC transporter (ATP-binding protein); hypothetical protein complement(1862938..1863585) Listeria innocua Clip11262 1130528 NP_471186.1 CDS lin1851 NC_003212.1 1863596 1864237 R similar to amino acid (glutamine) ABC transporter, permease protein; hypothetical protein complement(1863596..1864237) Listeria innocua Clip11262 1130530 NP_471187.1 CDS lin1852 NC_003212.1 1864637 1865677 R similar to two-component sensor histidine kinase; hypothetical protein complement(1864637..1865677) Listeria innocua Clip11262 1130531 NP_471188.1 CDS lin1853 NC_003212.1 1865699 1867438 R highly similar to adenine deaminases; hypothetical protein complement(1865699..1867438) Listeria innocua Clip11262 1130532 NP_471189.1 CDS lin1854 NC_003212.1 1867459 1867917 R lin1854; hypothetical protein complement(1867459..1867917) Listeria innocua Clip11262 1130533 NP_471190.1 CDS lin1855 NC_003212.1 1867938 1868813 R hypothetical protein complement(1867938..1868813) Listeria innocua Clip11262 1130534 NP_471191.1 CDS lin1856 NC_003212.1 1868885 1869562 R similar to two-component response regulator; hypothetical protein complement(1868885..1869562) Listeria innocua Clip11262 1130535 NP_471192.1 CDS lin1857 NC_003212.1 1869624 1871636 R similar to ABC transporter (permease); hypothetical protein complement(1869624..1871636) Listeria innocua Clip11262 1130536 NP_471193.1 CDS lin1859 NC_003212.1 1871593 1872360 R similar to ABC transporter (ATP-binding protein); hypothetical protein complement(1871593..1872360) Listeria innocua Clip11262 1130537 NP_471194.1 CDS lin1860 NC_003212.1 1872490 1872999 R lin1860; hypothetical protein complement(1872490..1872999) Listeria innocua Clip11262 1130539 NP_471195.1 CDS lin1861 NC_003212.1 1873221 1873694 D similar to shikimate kinase; hypothetical protein 1873221..1873694 Listeria innocua Clip11262 1130540 NP_471196.1 CDS lin1862 NC_003212.1 1873727 1874281 R hypothetical protein complement(1873727..1874281) Listeria innocua Clip11262 1130541 NP_471197.1 CDS lin1863 NC_003212.1 1874624 1875985 R Uncharacterized RNA methyltransferase lin1863; hypothetical protein complement(1874624..1875985) Listeria innocua Clip11262 1130542 NP_471198.1 CDS lin1864 NC_003212.1 1876009 1876764 R lin1864; hypothetical protein complement(1876009..1876764) Listeria innocua Clip11262 1130543 NP_471199.1 CDS lin1865 NC_003212.1 1876912 1877844 R similar to YegS from E. coli; putative lipid kinase complement(1876912..1877844) Listeria innocua Clip11262 1130544 NP_471200.1 CDS gatB NC_003212.1 1877986 1879416 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(1877986..1879416) Listeria innocua Clip11262 1130545 NP_471201.1 CDS gatA NC_003212.1 1879428 1880879 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(1879428..1880879) Listeria innocua Clip11262 1130546 NP_471202.1 CDS gatC NC_003212.1 1880903 1881196 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(1880903..1881196) Listeria innocua Clip11262 1130547 NP_471203.1 CDS lin1869 NC_003212.1 1881320 1882435 R hypothetical protein complement(1881320..1882435) Listeria innocua Clip11262 1130548 NP_471204.1 CDS ligA NC_003212.1 1882432 1884447 R similar to DNA ligase; this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(1882432..1884447) Listeria innocua Clip11262 1130549 NP_471205.1 CDS pcrA NC_003212.1 1884471 1886666 R ATP-dependent DNA helicase complement(1884471..1886666) Listeria innocua Clip11262 1130551 NP_471206.1 CDS lin1872 NC_003212.1 1886731 1887408 R PcrB-like protein; GGGP synthase; member of prenyltransferases that transfer isoprenoid groups to nonisoprenoid acceptors; functions in form GGGP from glycerol-1-phosphate (G-1-P) and geranylgeranyl pyrophosphate (GGPP); important in lipid metabolism and especially important as the ether linkages in archaea are different than those in bacteria; GGGP synthase lies at the branch point for membrane lipid biosynthesis; cytosolic; T acidophilum protein acts as a homodimer while M thermoautotrophicum protein has been reported to function as a pentamer; geranylgeranylglyceryl phosphate synthase-like protein complement(1886731..1887408) Listeria innocua Clip11262 1130552 NP_471207.1 CDS lin1873 NC_003212.1 1887616 1888971 D similar to putative sodium-dependent transporter; hypothetical protein 1887616..1888971 Listeria innocua Clip11262 1130553 NP_471208.1 CDS lin1874 NC_003212.1 1889013 1889267 R lin1874; hypothetical protein complement(1889013..1889267) Listeria innocua Clip11262 1130554 NP_471209.1 CDS lin1875 NC_003212.1 1889286 1889582 R hypothetical protein complement(1889286..1889582) Listeria innocua Clip11262 1130555 NP_471210.1 CDS purD NC_003212.1 1889720 1890982 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(1889720..1890982) Listeria innocua Clip11262 1130556 NP_471211.1 CDS purH NC_003212.1 1891009 1892538 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(1891009..1892538) Listeria innocua Clip11262 1130557 NP_471212.1 CDS lin1878 NC_003212.1 1892544 1893110 R highly similar to phosphoribosylglycinamide formyltransferases; hypothetical protein complement(1892544..1893110) Listeria innocua Clip11262 1130558 NP_471213.1 CDS purM NC_003212.1 1893107 1894153 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(1893107..1894153) Listeria innocua Clip11262 1130560 NP_471214.1 CDS purF NC_003212.1 1894172 1895599 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(1894172..1895599) Listeria innocua Clip11262 1130562 NP_471215.1 CDS purQ NC_003212.1 1895584 1897803 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II complement(1895584..1897803) Listeria innocua Clip11262 1130563 NP_471216.1 CDS lin1882 NC_003212.1 1897796 1898479 R similar to phosphoribosylformylglycinamidine synthetase II; catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I complement(1897796..1898479) Listeria innocua Clip11262 1130564 NP_471217.1 CDS lin1883 NC_003212.1 1898483 1898728 R With PurL and PurQ catalyzes the conversion of formylglycinamide ribonucleotide, ATP, and glutamine to formylglycinamidine ribonucleotide, ADP, and glutamate in the fourth step of the purine biosynthetic pathway; phosphoribosylformylglycinamidine synthase subunit PurS complement(1898483..1898728) Listeria innocua Clip11262 1130566 NP_471218.1 CDS purC NC_003212.1 1898740 1899453 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(1898740..1899453) Listeria innocua Clip11262 1130568 NP_471219.1 CDS purB NC_003212.1 1899534 1900826 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1899534..1900826) Listeria innocua Clip11262 1130569 NP_471220.1 CDS purK NC_003212.1 1900845 1901969 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(1900845..1901969) Listeria innocua Clip11262 1130570 NP_471221.1 CDS purE NC_003212.1 1901962 1902450 R Catalyzes a step in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(1901962..1902450) Listeria innocua Clip11262 1130571 NP_471222.1 CDS lin1888 NC_003212.1 1902664 1903188 R hypothetical protein complement(1902664..1903188) Listeria innocua Clip11262 1130573 NP_471223.1 CDS lin1889 NC_003212.1 1908589 1909194 R hypothetical protein complement(1908589..1909194) Listeria innocua Clip11262 1130577 NP_471224.1 CDS lin1890 NC_003212.1 1909259 1910032 D similar to ABC transporter (ATP-binding protein); hypothetical protein 1909259..1910032 Listeria innocua Clip11262 1130578 NP_471225.1 CDS lin1891 NC_003212.1 1910083 1910439 D lin1891; hypothetical protein 1910083..1910439 Listeria innocua Clip11262 1130579 NP_471226.1 CDS lin1892 NC_003212.1 1910463 1911695 R similar to aminotripeptidase (peptidase T); catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T complement(1910463..1911695) Listeria innocua Clip11262 1130580 NP_471227.1 CDS lin1893 NC_003212.1 1911753 1912283 R lin1893; hypothetical protein complement(1911753..1912283) Listeria innocua Clip11262 1130581 NP_471228.1 CDS lin1894 NC_003212.1 1912366 1913121 D similar to 3'-exo-deoxyribonuclease exoA; hypothetical protein 1912366..1913121 Listeria innocua Clip11262 1130582 NP_471229.1 CDS rplT NC_003212.1 1913162 1913521 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(1913162..1913521) Listeria innocua Clip11262 1130583 NP_471230.1 CDS rpmI NC_003212.1 1913561 1913761 R 50S ribosomal protein L35 complement(1913561..1913761) Listeria innocua Clip11262 1130584 NP_471231.1 CDS infC NC_003212.1 1913783 1914298 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(1913783..1914298) Listeria innocua Clip11262 1130585 NP_471232.1 CDS lin1898 NC_003212.1 1914593 1915126 R similar to putative NAD(P)H oxidoreductase; hypothetical protein complement(1914593..1915126) Listeria innocua Clip11262 1130586 NP_471233.1 CDS lin1899 NC_003212.1 1915276 1915638 D hypothetical protein 1915276..1915638 Listeria innocua Clip11262 1130587 NP_471234.1 CDS lin1900 NC_003212.1 1915670 1916245 R hypothetical protein complement(1915670..1916245) Listeria innocua Clip11262 1130588 NP_471235.1 CDS rplS NC_003212.1 1916347 1916691 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(1916347..1916691) Listeria innocua Clip11262 1130589 NP_471236.1 CDS lin1902 NC_003212.1 1916898 1917332 D similar to transcription regulator; hypothetical protein 1916898..1917332 Listeria innocua Clip11262 1130590 NP_471237.1 CDS lin1903 NC_003212.1 1917332 1917919 D weakly similar to Nad(P)h Oxidoreductase chain B; hypothetical protein 1917332..1917919 Listeria innocua Clip11262 1130591 NP_471238.1 CDS lin1904 NC_003212.1 1917940 1918656 D hypothetical protein 1917940..1918656 Listeria innocua Clip11262 1130592 NP_471239.1 CDS lin1905 NC_003212.1 1918688 1919077 R lin1905; hypothetical protein complement(1918688..1919077) Listeria innocua Clip11262 1130593 NP_471240.1 CDS trmD NC_003212.1 1919096 1919833 R similar to Escherichia coli tRNA (guanine-N1) methyltransferase; methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(1919096..1919833) Listeria innocua Clip11262 1130594 NP_471241.1 CDS rimM NC_003212.1 1919833 1920351 R similar to putative 16S rRNA processing protein RimM; Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(1919833..1920351) Listeria innocua Clip11262 1130595 NP_471242.1 CDS lin1908 NC_003212.1 1920361 1920747 R hypothetical protein complement(1920361..1920747) Listeria innocua Clip11262 1130596 NP_471243.1 CDS lin1909 NC_003212.1 1920775 1921509 R hypothetical protein complement(1920775..1921509) Listeria innocua Clip11262 1130597 NP_471244.1 CDS lin1910 NC_003212.1 1921619 1921849 R hypothetical protein complement(1921619..1921849) Listeria innocua Clip11262 1130598 NP_471245.1 CDS rpsP NC_003212.1 1921866 1922138 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(1921866..1922138) Listeria innocua Clip11262 1130599 NP_471246.1 CDS lin1912 NC_003212.1 1922241 1923899 R hypothetical protein complement(1922241..1923899) Listeria innocua Clip11262 1130600 NP_471247.1 CDS lin1913 NC_003212.1 1923973 1926621 R peptidoglycan binding protein complement(1923973..1926621) Listeria innocua Clip11262 1130601 NP_471248.1 CDS lin1914 NC_003212.1 1927111 1928007 R similar to protein-tyrosine phosphatase; hypothetical protein complement(1927111..1928007) Listeria innocua Clip11262 1130602 NP_471249.1 CDS lin1915 NC_003212.1 1928149 1929501 R similar to signal recognition particle protein Ffh; hypothetical protein complement(1928149..1929501) Listeria innocua Clip11262 1130603 NP_471250.1 CDS lin1916 NC_003212.1 1929514 1929846 R putative DNA-binding protein complement(1929514..1929846) Listeria innocua Clip11262 1130604 NP_471251.1 CDS lin1917 NC_003212.1 1929959 1930945 R similar to FtsY of Escherichia coli and SRP receptor alpha-subunit; hypothetical protein complement(1929959..1930945) Listeria innocua Clip11262 1130605 NP_471252.1 CDS lin1918 NC_003212.1 1930960 1934520 R similar to Smc protein essential for chromosome condensation and partition; hypothetical protein complement(1930960..1934520) Listeria innocua Clip11262 1130606 NP_471253.1 CDS rnc NC_003212.1 1934543 1935232 R similar to ribonuclease III; cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(1934543..1935232) Listeria innocua Clip11262 1130607 NP_471254.1 CDS acpP NC_003212.1 1935430 1935663 R highly similar to acyl carrier proteins; carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(1935430..1935663) Listeria innocua Clip11262 1130608 NP_471255.1 CDS lin1921 NC_003212.1 1935770 1936513 R similar to 3-ketoacyl-acyl carrier protein reductase; hypothetical protein complement(1935770..1936513) Listeria innocua Clip11262 1130609 NP_471256.1 CDS lin1922 NC_003212.1 1936517 1937458 R similar to malonyl CoA-acyl carrier protein transacylase; acyl-carrier-protein S-malonyltransferase complement(1936517..1937458) Listeria innocua Clip11262 1130610 NP_471257.1 CDS lin1923 NC_003212.1 1937451 1938464 R similar to plsX protein involved in fatty acid/phospholipid synthesis; involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX complement(1937451..1938464) Listeria innocua Clip11262 1130612 NP_471258.1 CDS lin1924 NC_003212.1 1938485 1939054 R negative regulator of genes involved in fatty acid and phospholipid biosynthesis for gram positive bacteria; fatty acid biosynthesis transcriptional regulator complement(1938485..1939054) Listeria innocua Clip11262 1130614 NP_471259.1 CDS lin1925 NC_003212.1 1939235 1941283 R similar to ATP-dependent DNA helicase recG; catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(1939235..1941283) Listeria innocua Clip11262 1130615 NP_471260.1 CDS lin1926 NC_003212.1 1941276 1942166 R similar to L-serine dehydratase; hypothetical protein complement(1941276..1942166) Listeria innocua Clip11262 1130616 NP_471261.1 CDS lin1927 NC_003212.1 1942313 1942975 R similar to phosphoglycerate dehydrogenase; hypothetical protein complement(1942313..1942975) Listeria innocua Clip11262 1130617 NP_471262.1 CDS lin1928 NC_003212.1 1943014 1944672 R hypothetical protein complement(1943014..1944672) Listeria innocua Clip11262 1130618 NP_471263.1 CDS lin1929 NC_003212.1 1944687 1945052 R hypothetical protein complement(1944687..1945052) Listeria innocua Clip11262 1130619 NP_471264.1 CDS rpmB NC_003212.1 1945351 1945539 D required for 70S ribosome assembly; 50S ribosomal protein L28 1945351..1945539 Listeria innocua Clip11262 1130620 NP_471265.1 CDS lin1931 NC_003212.1 1945635 1946279 R weakly similar to thiamin pyrophosphokinase; hypothetical protein complement(1945635..1946279) Listeria innocua Clip11262 1130621 NP_471266.1 CDS lin1932 NC_003212.1 1946345 1947001 R similar to ribulose-5-phosphate 3-epimerase; catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase complement(1946345..1947001) Listeria innocua Clip11262 1130622 NP_471267.1 CDS lin1933 NC_003212.1 1947004 1947879 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(1947004..1947879) Listeria innocua Clip11262 1130623 NP_471268.1 CDS lin1934 NC_003212.1 1947899 1949872 R similar to putative serine/threonine-specific protein kinase; hypothetical protein complement(1947899..1949872) Listeria innocua Clip11262 1130625 NP_471269.1 CDS lin1935 NC_003212.1 1949869 1950627 R similar to putative phosphoprotein phosphatase; hypothetical protein complement(1949869..1950627) Listeria innocua Clip11262 1130626 NP_471270.1 CDS lin1936 NC_003212.1 1950642 1951982 R similar to RNA-binding Sun protein; hypothetical protein complement(1950642..1951982) Listeria innocua Clip11262 1130628 NP_471271.1 CDS lin1937 NC_003212.1 1951983 1952921 R similar to methionyl-tRNA formyltransferase; hypothetical protein complement(1951983..1952921) Listeria innocua Clip11262 1130629 NP_471272.1 CDS lin1938 NC_003212.1 1952935 1955328 R similar to primosomal replication factor Y; binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(1952935..1955328) Listeria innocua Clip11262 1130630 NP_471273.1 CDS lin1939 NC_003212.1 1955333 1956532 R similar to pantothenate metabolism flavoprotein homolog; hypothetical protein complement(1955333..1956532) Listeria innocua Clip11262 1130631 NP_471274.1 CDS rpoZ NC_003212.1 1956686 1956889 R lin1940; Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(1956686..1956889) Listeria innocua Clip11262 1130632 NP_471275.1 CDS gmk NC_003212.1 1956889 1957506 R similar to guanylate kinases; Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(1956889..1957506) Listeria innocua Clip11262 1130633 NP_471276.1 CDS lin1942 NC_003212.1 1957525 1958400 R similar to conserved hypothetical protein; hypothetical protein complement(1957525..1958400) Listeria innocua Clip11262 1130635 NP_471277.1 CDS lin1943 NC_003212.1 1958558 1960270 D similar to fibronectin binding proteins; hypothetical protein 1958558..1960270 Listeria innocua Clip11262 1130636 NP_471278.1 CDS lin1944 NC_003212.1 1960358 1960957 D similar to conserved hypotheticl proteins; short chain dehydrogenase 1960358..1960957 Listeria innocua Clip11262 1130637 NP_471279.1 CDS pyrE NC_003212.1 1960994 1961623 R highly similar to orotate phosphoribosyltransferases; involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(1960994..1961623) Listeria innocua Clip11262 1130638 NP_471280.1 CDS lin1946 NC_003212.1 1961620 1962321 R highly similar to orotidine 5'-phosphate decarboxylases; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(1961620..1962321) Listeria innocua Clip11262 1130639 NP_471281.1 CDS lin1947 NC_003212.1 1962318 1963232 R highly similar to dihydroorotase dehydrogenase; catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B complement(1962318..1963232) Listeria innocua Clip11262 1130641 NP_471282.1 CDS lin1948 NC_003212.1 1963229 1963993 R highly similar to dihydroorotate dehydrogenase (electron transfer subunit); hypothetical protein complement(1963229..1963993) Listeria innocua Clip11262 1130643 NP_471283.1 CDS carB NC_003212.1 1964016 1967228 R highly similar to carbamoyl-phosphate synthetase (catalytic subunit); four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(1964016..1967228) Listeria innocua Clip11262 1130645 NP_471284.1 CDS lin1950 NC_003212.1 1967221 1968312 R highly similar to carbamoyl-phosphate synthetase (glutaminase subunit); catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(1967221..1968312) Listeria innocua Clip11262 1130646 NP_471285.1 CDS pyrC NC_003212.1 1968309 1969589 R highly similar to dihydroorotase; catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(1968309..1969589) Listeria innocua Clip11262 1130647 NP_471286.1 CDS pyrB NC_003212.1 1969577 1970488 R highly similar to aspartate carbamoyltransferase; catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit complement(1969577..1970488) Listeria innocua Clip11262 1130648 NP_471287.1 CDS lin1953 NC_003212.1 1970567 1971853 R highly similar to uracil permease; hypothetical protein complement(1970567..1971853) Listeria innocua Clip11262 1130650 NP_471288.1 CDS lin1954 NC_003212.1 1971982 1972533 R highly similar to pyrimidine operon regulatory protein; regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase complement(1971982..1972533) Listeria innocua Clip11262 1130651 NP_471289.1 CDS lin1955 NC_003212.1 1972765 1972959 D lin1955; hypothetical protein 1972765..1972959 Listeria innocua Clip11262 1130652 NP_471290.1 CDS lin1956 NC_003212.1 1973085 1973909 D hypothetical protein 1973085..1973909 Listeria innocua Clip11262 1130653 NP_471291.1 CDS lin1957 NC_003212.1 1973927 1974835 R hypothetical protein complement(1973927..1974835) Listeria innocua Clip11262 1130654 NP_471292.1 CDS lspA NC_003212.1 1974835 1975299 R highly similar to signal peptidase II; lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(1974835..1975299) Listeria innocua Clip11262 1130655 NP_471293.1 CDS lin1959 NC_003212.1 1975381 1976664 R hypothetical protein complement(1975381..1976664) Listeria innocua Clip11262 1130657 NP_471294.1 CDS lin1960 NC_003212.1 1976838 1978208 D Probable multidrug resistance protein norM (Multidrug-efflux transporter); NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein 1976838..1978208 Listeria innocua Clip11262 1130658 NP_471295.1 CDS lin1961 NC_003212.1 1978222 1979154 R similar to adhesion binding proteins and lipoproteins with multiple specificity for metal cations (ABC transporter); hypothetical protein complement(1978222..1979154) Listeria innocua Clip11262 1130659 NP_471296.1 CDS lin1962 NC_003212.1 1979151 1979993 R similar metal cations ABC transporter (permease protein); hypothetical protein complement(1979151..1979993) Listeria innocua Clip11262 1130660 NP_471297.1 CDS lin1963 NC_003212.1 1979996 1980718 R similar to metal cations ABC transporter, ATP-binding proteins; hypothetical protein complement(1979996..1980718) Listeria innocua Clip11262 1130662 NP_471298.1 CDS lin1964 NC_003212.1 1980872 1981294 R similar to transcriptional regulator (MarR family); hypothetical protein complement(1980872..1981294) Listeria innocua Clip11262 1130664 NP_471299.1 CDS lin1965 NC_003212.1 1981333 1982823 R similar to carboxy-terminal processing proteinase; hypothetical protein complement(1981333..1982823) Listeria innocua Clip11262 1130665 NP_471300.1 CDS lin1966 NC_003212.1 1982976 1983182 R similar to putative mercuric ion binding proteins; hypothetical protein complement(1982976..1983182) Listeria innocua Clip11262 1130666 NP_471301.1 CDS lin1967 NC_003212.1 1983195 1985408 R similar to heavy metal-transporting ATPases; hypothetical protein complement(1983195..1985408) Listeria innocua Clip11262 1130667 NP_471302.1 CDS lin1968 NC_003212.1 1985423 1985716 R hypothetical protein complement(1985423..1985716) Listeria innocua Clip11262 1130668 NP_471303.1 CDS lin1969 NC_003212.1 1985841 1986665 R similar to similar to D-alanyl-D-alanine carboxypeptidases; hypothetical protein complement(1985841..1986665) Listeria innocua Clip11262 1130669 NP_471304.1 CDS deoD NC_003212.1 1986723 1987424 R catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase complement(1986723..1987424) Listeria innocua Clip11262 1130670 NP_471305.1 CDS lin1971 NC_003212.1 1987437 1987670 R similar to hypoyhetical protein; hypothetical protein complement(1987437..1987670) Listeria innocua Clip11262 1130671 NP_471306.1 CDS lin1972 NC_003212.1 1987733 1988638 R similar to dehydogenases and hypothetical proteins; hypothetical protein complement(1987733..1988638) Listeria innocua Clip11262 1130672 NP_471307.1 CDS lin1973 NC_003212.1 1988722 1989159 R similar to transcriptional regulator (PilB family); this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B complement(1988722..1989159) Listeria innocua Clip11262 1130673 NP_471308.1 CDS lin1974 NC_003212.1 1989166 1989699 R similar to peptidyl methionine sulfoxide reductases; this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(1989166..1989699) Listeria innocua Clip11262 1130674 NP_471309.1 CDS lin1975 NC_003212.1 1989736 1990350 R hypothetical protein complement(1989736..1990350) Listeria innocua Clip11262 1130676 NP_471310.1 CDS lin1976 NC_003212.1 1990366 1991151 R hypothetical protein complement(1990366..1991151) Listeria innocua Clip11262 1130677 NP_471311.1 CDS lin1977 NC_003212.1 1991166 1992005 R hypothetical protein complement(1991166..1992005) Listeria innocua Clip11262 1130678 NP_471312.1 CDS lin1978 NC_003212.1 1992187 1992819 D similar to hemolysinIII proteins, putative integral membrane protein; hypothetical protein 1992187..1992819 Listeria innocua Clip11262 1130679 NP_471313.1 CDS lin1979 NC_003212.1 1992940 1993569 D hypothetical protein 1992940..1993569 Listeria innocua Clip11262 1130680 NP_471314.1 CDS lin1980 NC_003212.1 1993582 1994394 D hypothetical protein 1993582..1994394 Listeria innocua Clip11262 1130681 NP_471315.1 CDS lin1981 NC_003212.1 1994413 1997052 D similar to pyruvate phosphate dikinase; catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 1994413..1997052 Listeria innocua Clip11262 1130682 NP_471316.1 CDS lin1982 NC_003212.1 1997097 1997474 R hypothetical protein complement(1997097..1997474) Listeria innocua Clip11262 1130683 NP_471317.1 CDS lin1983 NC_003212.1 1997478 1998461 R similar to conserved hypothetical proteins, putative integral membrane protein; hypothetical protein complement(1997478..1998461) Listeria innocua Clip11262 1130684 NP_471318.1 CDS lin1984 NC_003212.1 1998555 1999178 R similar to alkaline phosphatase; hypothetical protein complement(1998555..1999178) Listeria innocua Clip11262 1130685 NP_471319.1 CDS lin1985 NC_003212.1 1999318 2000829 R similar to phosphoglucomutases; hypothetical protein complement(1999318..2000829) Listeria innocua Clip11262 1130686 NP_471320.1 CDS lin1986 NC_003212.1 2000898 2001773 R similar to methyltransferases; hypothetical protein complement(2000898..2001773) Listeria innocua Clip11262 1130687 NP_471321.1 CDS lin1987 NC_003212.1 2001826 2002308 R similar to dihydrofolate reductases; hypothetical protein complement(2001826..2002308) Listeria innocua Clip11262 1130688 NP_471322.1 CDS thyA NC_003212.1 2002324 2003268 R similar to thymidylate synthase; ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(2002324..2003268) Listeria innocua Clip11262 1130689 NP_471323.1 CDS lin1989 NC_003212.1 2003281 2005173 R similar to putative ABC transporters (ATP-binding protein); hypothetical protein complement(2003281..2005173) Listeria innocua Clip11262 1130690 NP_471324.1 CDS lin1990 NC_003212.1 2005293 2006975 R similar to formyl-tetrahydrofolate synthetase; catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase complement(2005293..2006975) Listeria innocua Clip11262 1130691 NP_471325.1 CDS lin1991 NC_003212.1 2007135 2007563 R similar o transcriptional regulators; involved in manganese homeostasis; activates the transcription of the mntABCD operon; manganese transport transcriptional regulator complement(2007135..2007563) Listeria innocua Clip11262 1130692 NP_471326.1 CDS lin1992 NC_003212.1 2007937 2008137 D similar to cold shock protein; hypothetical protein 2007937..2008137 Listeria innocua Clip11262 1130693 NP_471327.1 CDS lin1993 NC_003212.1 2008260 2008661 D similar to similar to RNase HI; hypothetical protein 2008260..2008661 Listeria innocua Clip11262 1130694 NP_471328.1 CDS lin1994 NC_003212.1 2008679 2009551 R similar to 5'-3' exonuclease; hypothetical protein complement(2008679..2009551) Listeria innocua Clip11262 1130695 NP_471329.1 CDS rpsN NC_003212.1 2009629 2009898 R similar to ribosomal protein S14; located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(2009629..2009898) Listeria innocua Clip11262 1130696 NP_471330.1 CDS lin1996 NC_003212.1 2010021 2011079 R similar to chitinases; hypothetical protein complement(2010021..2011079) Listeria innocua Clip11262 1130697 NP_471331.1 CDS lin1997 NC_003212.1 2011271 2012578 R similar to xanthine permeases; hypothetical protein complement(2011271..2012578) Listeria innocua Clip11262 1130698 NP_471332.1 CDS lin1998 NC_003212.1 2012585 2013163 R similar to xanthine phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase complement(2012585..2013163) Listeria innocua Clip11262 1130699 NP_471333.1 CDS lin1999 NC_003212.1 2013391 2014899 R similar to probable thermostable carboxypeptidases; hypothetical protein complement(2013391..2014899) Listeria innocua Clip11262 1130701 NP_471334.1 CDS lin2000 NC_003212.1 2014915 2016063 R hypothetical protein complement(2014915..2016063) Listeria innocua Clip11262 1130702 NP_471335.1 CDS lin2001 NC_003212.1 2016139 2016423 R hypothetical protein complement(2016139..2016423) Listeria innocua Clip11262 1130703 NP_471336.1 CDS lin2002 NC_003212.1 2016643 2016984 R hypothetical protein complement(2016643..2016984) Listeria innocua Clip11262 1130704 NP_471337.1 CDS lin2003 NC_003212.1 2017116 2017661 R hypothetical protein complement(2017116..2017661) Listeria innocua Clip11262 1130705 NP_471338.1 CDS lin2004 NC_003212.1 2017658 2018023 R hypothetical protein complement(2017658..2018023) Listeria innocua Clip11262 1130706 NP_471339.1 CDS recU NC_003212.1 2018270 2018875 D similar to DNA repair and homologous recombination protein; functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC; Holliday junction-specific endonuclease 2018270..2018875 Listeria innocua Clip11262 1130707 NP_471340.1 CDS lin2006 NC_003212.1 2018907 2021387 D similar to penicillin-binding protein 2A; hypothetical protein 2018907..2021387 Listeria innocua Clip11262 1130708 NP_471341.1 CDS lin2007 NC_003212.1 2021431 2021922 R lin2007; hypothetical protein complement(2021431..2021922) Listeria innocua Clip11262 1130709 NP_471342.1 CDS nth NC_003212.1 2021915 2022574 R endonuclease III (DNA repair) complement(2021915..2022574) Listeria innocua Clip11262 1130710 NP_471343.1 CDS lin2009 NC_003212.1 2022585 2023304 R similar to chromosome replication initiation protein; hypothetical protein complement(2022585..2023304) Listeria innocua Clip11262 1130712 NP_471344.1 CDS asnC NC_003212.1 2023449 2024741 R similar to asparaginyl-tRNA synthetases; catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(2023449..2024741) Listeria innocua Clip11262 1130714 NP_471345.1 CDS lin2011 NC_003212.1 2024755 2025936 R similar to aspartate aminotransferases; catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(2024755..2025936) Listeria innocua Clip11262 1130715 NP_471346.1 CDS lin2012 NC_003212.1 2025959 2026480 R hypothetical protein complement(2025959..2026480) Listeria innocua Clip11262 1130716 NP_471347.1 CDS lin2013 NC_003212.1 2026589 2029375 R similar to ATP-dependent helicases; unwinds DNA; bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon complement(2026589..2029375) Listeria innocua Clip11262 1130717 NP_471348.1 CDS lin2014 NC_003212.1 2029472 2029855 R similar to aspartate 1-decarboxylases; Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(2029472..2029855) Listeria innocua Clip11262 1130718 NP_471349.1 CDS panC NC_003212.1 2029859 2030716 R similar to panthotenate synthetases; catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(2029859..2030716) Listeria innocua Clip11262 1130719 NP_471350.1 CDS panB NC_003212.1 2030720 2031553 R similar to ketopantoate hydroxymethyltransferases; catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(2030720..2031553) Listeria innocua Clip11262 1130721 NP_471351.1 CDS lin2017 NC_003212.1 2031720 2032193 R similar to thioredoxin; hypothetical protein complement(2031720..2032193) Listeria innocua Clip11262 1130723 NP_471352.1 CDS lin2018 NC_003212.1 2032341 2033318 R similar to transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase; hypothetical protein complement(2032341..2033318) Listeria innocua Clip11262 1130724 NP_471353.1 CDS lin2019 NC_003212.1 2033308 2034489 R similar to tRNA CCA-adding enzyme; catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase complement(2033308..2034489) Listeria innocua Clip11262 1130725 NP_471354.1 CDS mgsA NC_003212.1 2034504 2034908 R similar to methylglyoxal synthase; catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase complement(2034504..2034908) Listeria innocua Clip11262 1130727 NP_471355.1 CDS lin2021 NC_003212.1 2034924 2035715 R similar to dihydrodipicolinate reductase; catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(2034924..2035715) Listeria innocua Clip11262 1130728 NP_471356.1 CDS lin2022 NC_003212.1 2035712 2036047 R hypothetical protein complement(2035712..2036047) Listeria innocua Clip11262 1130729 NP_471357.1 CDS lin2023 NC_003212.1 2036188 2037054 D hypothetical protein 2036188..2037054 Listeria innocua Clip11262 1130731 NP_471358.1 CDS lin2024 NC_003212.1 2037044 2038150 R similar to oxidoreductases; hypothetical protein complement(2037044..2038150) Listeria innocua Clip11262 1130732 NP_471359.1 CDS lin2025 NC_003212.1 2038471 2039610 D similar to unknown proteins (hypothetical sensory transduction histidine kinase); hypothetical protein 2038471..2039610 Listeria innocua Clip11262 1130733 NP_471360.1 CDS lin2026 NC_003212.1 2039631 2040758 D similar to unknown proteins (hypothetical sensory transduction histidine kinase); hypothetical protein 2039631..2040758 Listeria innocua Clip11262 1130734 NP_471361.1 CDS lin2027 NC_003212.1 2040755 2041759 D hypothetical protein 2040755..2041759 Listeria innocua Clip11262 1130736 NP_471362.1 CDS lin2028 NC_003212.1 2041778 2042461 D hypothetical protein 2041778..2042461 Listeria innocua Clip11262 1130737 NP_471363.1 CDS lin2029 NC_003212.1 2042569 2044212 D similar to malolactic enzyme (malate dehydrogenase); malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 2042569..2044212 Listeria innocua Clip11262 1130738 NP_471364.1 CDS lin2030 NC_003212.1 2044215 2045222 D similar to peptidase; hypothetical protein 2044215..2045222 Listeria innocua Clip11262 1130740 NP_471365.1 CDS lin2031 NC_003212.1 2045430 2047709 D similar to pyruvate formate-lyase; hypothetical protein 2045430..2047709 Listeria innocua Clip11262 1130741 NP_471366.1 CDS lin2032 NC_003212.1 2047755 2049020 R hypothetical protein complement(2047755..2049020) Listeria innocua Clip11262 1130742 NP_471367.1 CDS lin2033 NC_003212.1 2049132 2049815 R hypothetical protein complement(2049132..2049815) Listeria innocua Clip11262 1130743 NP_471368.1 CDS lin2034 NC_003212.1 2049901 2050497 R hypothetical protein complement(2049901..2050497) Listeria innocua Clip11262 1130744 NP_471369.1 CDS lin2035 NC_003212.1 2050585 2051130 R hypothetical protein complement(2050585..2051130) Listeria innocua Clip11262 1130745 NP_471370.1 CDS lin2036 NC_003212.1 2051162 2052415 R hypothetical protein complement(2051162..2052415) Listeria innocua Clip11262 1130746 NP_471371.1 CDS lin2037 NC_003212.1 2052546 2053832 R similar to 5-enolpyruvylshikimate-3-phosphate synthase; catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(2052546..2053832) Listeria innocua Clip11262 1130747 NP_471372.1 CDS lin2038 NC_003212.1 2053846 2054949 R similar to prephenate dehydrogenase; catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase complement(2053846..2054949) Listeria innocua Clip11262 1130748 NP_471373.1 CDS lin2039 NC_003212.1 2054970 2056052 R similar to histidinol-phosphate aminotransferase and tyrosine/phenylalanine aminotransferase; catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(2054970..2056052) Listeria innocua Clip11262 1130749 NP_471374.1 CDS lin2040 NC_003212.1 2056052 2056426 R similar to chorismate mutase; hypothetical protein complement(2056052..2056426) Listeria innocua Clip11262 1130750 NP_471375.1 CDS aroB NC_003212.1 2056423 2057520 R similar to 3-dehydroquinate synthase; catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(2056423..2057520) Listeria innocua Clip11262 1130751 NP_471376.1 CDS lin2042 NC_003212.1 2057523 2058689 R similar to chorismate synthase; catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(2057523..2058689) Listeria innocua Clip11262 1130752 NP_471377.1 CDS ndk NC_003212.1 2058893 2059336 R similar to nucleoside diphosphate kinase; catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(2058893..2059336) Listeria innocua Clip11262 1130754 NP_471378.1 CDS lin2044 NC_003212.1 2059356 2060321 R similar to heptaprenyl diphosphate synthase component II (menaquinone biosynthesis); hypothetical protein complement(2059356..2060321) Listeria innocua Clip11262 1130755 NP_471379.1 CDS ubiE NC_003212.1 2060332 2061045 R similar to 2-heptaprenyl-1,4-naphthoquinone methyltransferase; Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(2060332..2061045) Listeria innocua Clip11262 1130756 NP_471380.1 CDS lin2046 NC_003212.1 2061068 2061835 R similar to heptaprenyl diphosphate synthase component I; hypothetical protein complement(2061068..2061835) Listeria innocua Clip11262 1130757 NP_471381.1 CDS folE NC_003212.1 2061894 2062463 R similar to GTP cyclohydrolase I; involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(2061894..2062463) Listeria innocua Clip11262 1130758 NP_471382.1 CDS lin2048 NC_003212.1 2062689 2062964 R similar to non-specific DNA-binding protein HU; hypothetical protein complement(2062689..2062964) Listeria innocua Clip11262 1130759 NP_471383.1 CDS lin2049 NC_003212.1 2063378 2064358 R similar to protein-tyrosine/serine phosphatase; hypothetical protein complement(2063378..2064358) Listeria innocua Clip11262 1130760 NP_471384.1 CDS gpsA NC_003212.1 2064461 2065477 R similar to NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(2064461..2065477) Listeria innocua Clip11262 1130761 NP_471385.1 CDS engA NC_003212.1 2065500 2066810 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(2065500..2066810) Listeria innocua Clip11262 1130762 NP_471386.1 CDS rpsA NC_003212.1 2066954 2068099 R similar to similar to ribosomal protein S1 like protein; in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(2066954..2068099) Listeria innocua Clip11262 1130763 NP_471387.1 CDS cmk NC_003212.1 2068459 2069133 R similar to cytidylate kinase; Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(2068459..2069133) Listeria innocua Clip11262 1130764 NP_471388.1 CDS lin2054 NC_003212.1 2069149 2070111 R similar to asparaginase; hypothetical protein complement(2069149..2070111) Listeria innocua Clip11262 1130765 NP_471389.1 CDS lin2055 NC_003212.1 2070192 2070923 R hypothetical protein complement(2070192..2070923) Listeria innocua Clip11262 1130766 NP_471390.1 CDS lin2056 NC_003212.1 2071244 2072647 R similar to ATP-dependent DNA helicase; hypothetical protein complement(2071244..2072647) Listeria innocua Clip11262 1130767 NP_471391.1 CDS lin2057 NC_003212.1 2072644 2073651 R hypothetical protein complement(2072644..2073651) Listeria innocua Clip11262 1130768 NP_471392.1 CDS lin2058 NC_003212.1 2073807 2074031 D similar to ferredoxin; hypothetical protein 2073807..2074031 Listeria innocua Clip11262 1130770 NP_471393.1 CDS lin2059 NC_003212.1 2074073 2074684 R hypothetical protein complement(2074073..2074684) Listeria innocua Clip11262 1130771 NP_471394.1 CDS lin2060 NC_003212.1 2075126 2075644 R similar to similar to acyl-CoA hydrolase; hypothetical protein complement(2075126..2075644) Listeria innocua Clip11262 1130772 NP_471395.1 CDS lin2061 NC_003212.1 2075660 2077450 R similar to two-component sensor histidine kinase (ResE); hypothetical protein complement(2075660..2077450) Listeria innocua Clip11262 1130773 NP_471396.1 CDS lin2062 NC_003212.1 2077548 2078264 R similar to two-component response regulator (ResD); hypothetical protein complement(2077548..2078264) Listeria innocua Clip11262 1130774 NP_471397.1 CDS lin2063 NC_003212.1 2078449 2079183 R hypothetical protein complement(2078449..2079183) Listeria innocua Clip11262 1130775 NP_471398.1 CDS lin2064 NC_003212.1 2079186 2079782 R hypothetical protein complement(2079186..2079782) Listeria innocua Clip11262 1130776 NP_471399.1 CDS scpA NC_003212.1 2079779 2080528 R functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB; segregation and condensation protein A complement(2079779..2080528) Listeria innocua Clip11262 1130778 NP_471400.1 CDS lin2066 NC_003212.1 2080544 2081854 R similar to diaminopimelate decarboxylase; hypothetical protein complement(2080544..2081854) Listeria innocua Clip11262 1130780 NP_471401.1 CDS lin2067 NC_003212.1 2082034 2082852 R similar to purine-nucleoside phosphorylase; catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase complement(2082034..2082852) Listeria innocua Clip11262 1130781 NP_471402.1 CDS lin2068 NC_003212.1 2082871 2084055 R similar to phosphopentomutase; catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase complement(2082871..2084055) Listeria innocua Clip11262 1130782 NP_471403.1 CDS lin2069 NC_003212.1 2084084 2084977 R similar to integrase/recombinase; hypothetical protein complement(2084084..2084977) Listeria innocua Clip11262 1130783 NP_471404.1 CDS lin2070 NC_003212.1 2085123 2085581 R similar to transcriptional regulator (Fur family); hypothetical protein complement(2085123..2085581) Listeria innocua Clip11262 1130784 NP_471405.1 CDS lin2071 NC_003212.1 2085823 2086845 R similar to ferrichrome ABC transporter (permease); hypothetical protein complement(2085823..2086845) Listeria innocua Clip11262 1130785 NP_471406.1 CDS lin2072 NC_003212.1 2086845 2087870 R similar to ferrichrome ABC transporter (permease); hypothetical protein complement(2086845..2087870) Listeria innocua Clip11262 1130786 NP_471407.1 CDS lin2073 NC_003212.1 2087972 2088913 R similar to ferrichrome binding protein; hypothetical protein complement(2087972..2088913) Listeria innocua Clip11262 1130788 NP_471408.1 CDS lin2074 NC_003212.1 2089079 2089903 D similar to ferrichrome ABC transporter (ATP-binding protein); hypothetical protein 2089079..2089903 Listeria innocua Clip11262 1130789 NP_471409.1 CDS lin2075 NC_003212.1 2089893 2090891 D similar to oxidoreductases; hypothetical protein 2089893..2090891 Listeria innocua Clip11262 1130791 NP_471410.1 CDS lin2076 NC_003212.1 2090906 2091526 R similar to transcription regulators (TetR family); hypothetical protein complement(2090906..2091526) Listeria innocua Clip11262 1130792 NP_471411.1 CDS lin2077 NC_003212.1 2091526 2092341 R hypothetical protein complement(2091526..2092341) Listeria innocua Clip11262 1130793 NP_471412.1 CDS lin2078 NC_003212.1 2092338 2093225 R similar to ABC transporter, ATP-binding protein; hypothetical protein complement(2092338..2093225) Listeria innocua Clip11262 1130795 NP_471413.1 CDS lin2079 NC_003212.1 2093788 2094345 R hypothetical protein complement(2093788..2094345) Listeria innocua Clip11262 1130797 NP_471414.1 CDS lin2080 NC_003212.1 2094622 2095281 D hypothetical protein 2094622..2095281 Listeria innocua Clip11262 1130798 NP_471415.1 CDS lin2081 NC_003212.1 2095259 2096458 D similar to toxic ion resistance proteins; hypothetical protein 2095259..2096458 Listeria innocua Clip11262 1130800 NP_471416.1 CDS lin2082 NC_003212.1 2096496 2097566 R similar to Escherichia coli DNA-damage-inducible protein dinP; involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(2096496..2097566) Listeria innocua Clip11262 1130801 NP_471417.1 CDS lin2083 NC_003212.1 2097675 2098466 R similar to oxidoreductase; hypothetical protein complement(2097675..2098466) Listeria innocua Clip11262 1130802 NP_471418.1 CDS lin2084 NC_003212.1 2098471 2099391 R hypothetical protein complement(2098471..2099391) Listeria innocua Clip11262 1130803 NP_471419.1 CDS lin2085 NC_003212.1 2099692 2101167 D similar to glucose-6-phosphate 1-dehydrogenase; catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2099692..2101167 Listeria innocua Clip11262 1130805 NP_471420.1 CDS lin2086 NC_003212.1 2101286 2101717 D hypothetical protein 2101286..2101717 Listeria innocua Clip11262 1130806 NP_471421.1 CDS lin2087 NC_003212.1 2101751 2101888 D lin2087; hypothetical protein 2101751..2101888 Listeria innocua Clip11262 1130807 NP_471422.1 CDS lin2088 NC_003212.1 2101871 2102356 R hypothetical protein complement(2101871..2102356) Listeria innocua Clip11262 1130808 NP_471423.1 CDS lin2089 NC_003212.1 2102329 2102856 R hypothetical protein complement(2102329..2102856) Listeria innocua Clip11262 1130809 NP_471424.1 CDS lin2090 NC_003212.1 2103546 2105240 D similar to dihydroxy-acid dehydratase; catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 2103546..2105240 Listeria innocua Clip11262 1130810 NP_471425.1 CDS lin2091 NC_003212.1 2105259 2106980 D similar to acetolactate synthase (acetohydroxy-acid synthase) (large subunit); hypothetical protein 2105259..2106980 Listeria innocua Clip11262 1130811 NP_471426.1 CDS ilvH NC_003212.1 2106981 2107472 D similar to acetolactate synthase (acetohydroxy-acid synthase) (small subunit); with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2106981..2107472 Listeria innocua Clip11262 1130812 NP_471427.1 CDS lin2093 NC_003212.1 2107570 2108565 D similar to ketol-acid reductoisomerase (acetohydroxy-acid isomeroreductase); catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 2107570..2108565 Listeria innocua Clip11262 1130813 NP_471428.1 CDS lin2094 NC_003212.1 2108723 2110261 D similar to 2-isopropylmalate synthase; catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 2108723..2110261 Listeria innocua Clip11262 1130814 NP_471429.1 CDS lin2095 NC_003212.1 2110263 2111315 D similar to 3-isopropylmalate dehydrogenase; catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 2110263..2111315 Listeria innocua Clip11262 1130816 NP_471430.1 CDS lin2096 NC_003212.1 2111317 2112705 D similar to 3-isopropylmalate dehydratase (large subunit); dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 2111317..2112705 Listeria innocua Clip11262 1130818 NP_471431.1 CDS leuD NC_003212.1 2112692 2113273 D similar to 3-isopropylmalate dehydratase (small subunit); catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 2112692..2113273 Listeria innocua Clip11262 1130820 NP_471432.1 CDS lin2098 NC_003212.1 2113292 2114560 D similar to threonine dehydratase; catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic; threonine dehydratase 2113292..2114560 Listeria innocua Clip11262 1130821 NP_471433.1 CDS lin2099 NC_003212.1 2114752 2115471 D similar to alpha-acetolactate decarboxylase; hypothetical protein 2114752..2115471 Listeria innocua Clip11262 1130822 NP_471434.1 CDS lin2100 NC_003212.1 2115512 2117806 R similar to p60-related proteins; hypothetical protein complement(2115512..2117806) Listeria innocua Clip11262 1130823 NP_471435.1 CDS lin2101 NC_003212.1 2117991 2119292 R similar to pyrimidine-nucleoside phosphorylase; Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway; pyrimidine-nucleoside phosphorylase complement(2117991..2119292) Listeria innocua Clip11262 1130824 NP_471436.1 CDS lin2102 NC_003212.1 2119423 2120433 R similar to transcription regulators (LacI family); hypothetical protein complement(2119423..2120433) Listeria innocua Clip11262 1130825 NP_471437.1 CDS lin2103 NC_003212.1 2120513 2121184 R similar to deoxyribose-phosphate aldolase; catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase complement(2120513..2121184) Listeria innocua Clip11262 1130826 NP_471438.1 CDS lin2104 NC_003212.1 2121247 2122194 R similar to transcription repressor of dra/nupC/pdp operon DeoR; hypothetical protein complement(2121247..2122194) Listeria innocua Clip11262 1130827 NP_471439.1 CDS lin2105 NC_003212.1 2122292 2122708 R similar to PTS mannose-specific enzyme IIA component; hypothetical protein complement(2122292..2122708) Listeria innocua Clip11262 1130828 NP_471440.1 CDS lin2106 NC_003212.1 2122725 2123720 R similar to opine catabolism protein; hypothetical protein complement(2122725..2123720) Listeria innocua Clip11262 1130829 NP_471441.1 CDS lin2107 NC_003212.1 2123743 2124807 R weakly similar to glucosamine-fructose-6-phosphate aminotransferase; hypothetical protein complement(2123743..2124807) Listeria innocua Clip11262 1130830 NP_471442.1 CDS lin2108 NC_003212.1 2124820 2125641 R similar to PTS mannose-specific enzyme IID component; hypothetical protein complement(2124820..2125641) Listeria innocua Clip11262 1130831 NP_471443.1 CDS lin2109 NC_003212.1 2125622 2126440 R similar to PTS mannose-specific enzyme IIC component; hypothetical protein complement(2125622..2126440) Listeria innocua Clip11262 1130832 NP_471444.1 CDS lin2110 NC_003212.1 2126463 2126930 R similar to PTS mannose-specific enzyme IIB component; hypothetical protein complement(2126463..2126930) Listeria innocua Clip11262 1130834 NP_471445.1 CDS lin2111 NC_003212.1 2126950 2127651 R similar to transcription regulator GntR family; hypothetical protein complement(2126950..2127651) Listeria innocua Clip11262 1130835 NP_471446.1 CDS lin2112 NC_003212.1 2127654 2128385 R similar to transcription regulator GntR family; hypothetical protein complement(2127654..2128385) Listeria innocua Clip11262 1130836 NP_471447.1 CDS lin2113 NC_003212.1 2128554 2129549 R similar to oxidoreductase; hypothetical protein complement(2128554..2129549) Listeria innocua Clip11262 1130838 NP_471448.1 CDS lin2114 NC_003212.1 2129664 2131358 R similar to alpha-acetolactate synthase protein, AlsS; catalyzes the formation of 2-acetolactate from pyruvate in stationary phase; acetolactate synthase complement(2129664..2131358) Listeria innocua Clip11262 1130839 NP_471449.1 CDS lin2115 NC_003212.1 2131545 2133002 R weakly similar to putative sugar-binding lipoproteins; hypothetical protein complement(2131545..2133002) Listeria innocua Clip11262 1130840 NP_471450.1 CDS lin2116 NC_003212.1 2133021 2133992 R similar to putative ABC transporter, permease protein; hypothetical protein complement(2133021..2133992) Listeria innocua Clip11262 1130841 NP_471451.1 CDS lin2117 NC_003212.1 2134011 2134940 R similar to putative transport system integral membrane protein; hypothetical protein complement(2134011..2134940) Listeria innocua Clip11262 1130842 NP_471452.1 CDS lin2118 NC_003212.1 2135053 2136537 R similar to two-component response regulator; hypothetical protein complement(2135053..2136537) Listeria innocua Clip11262 1130843 NP_471453.1 CDS lin2119 NC_003212.1 2136537 2138270 R similar to two-component sensor histidine kinase; hypothetical protein complement(2136537..2138270) Listeria innocua Clip11262 1130844 NP_471454.1 CDS lin2120 NC_003212.1 2138333 2138944 R hypothetical protein complement(2138333..2138944) Listeria innocua Clip11262 1130846 NP_471455.1 CDS lin2121 NC_003212.1 2139004 2140308 R hypothetical protein complement(2139004..2140308) Listeria innocua Clip11262 1130847 NP_471456.1 CDS lin2122 NC_003212.1 2140312 2142960 R similar to putative sugar hydrolases; hypothetical protein complement(2140312..2142960) Listeria innocua Clip11262 1130848 NP_471457.1 CDS lin2123 NC_003212.1 2143225 2146323 D similar to alpha-mannosidase; hypothetical protein 2143225..2146323 Listeria innocua Clip11262 1130850 NP_471458.1 CDS lin2124 NC_003212.1 2146391 2146591 R similar to major cold-shock protein; hypothetical protein complement(2146391..2146591) Listeria innocua Clip11262 1130851 NP_471459.1 CDS lin2125 NC_003212.1 2146878 2147573 R hypothetical protein complement(2146878..2147573) Listeria innocua Clip11262 1130852 NP_471460.1 CDS dapF NC_003212.1 2147587 2148576 R similar to diaminopimelate epimerase; involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(2147587..2148576) Listeria innocua Clip11262 1130853 NP_471461.1 CDS ileS NC_003212.1 2148688 2151453 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(2148688..2151453) Listeria innocua Clip11262 1130854 NP_471462.1 CDS lin2128 NC_003212.1 2151736 2152263 R similar to cell-division initiation protein (septum placement); hypothetical protein complement(2151736..2152263) Listeria innocua Clip11262 1130855 NP_471463.1 CDS lin2129 NC_003212.1 2152358 2152879 R hypothetical protein complement(2152358..2152879) Listeria innocua Clip11262 1130856 NP_471464.1 CDS lin2130 NC_003212.1 2152884 2153990 R similar to a NifS-like protein required for NAD biosynthesis; hypothetical protein complement(2152884..2153990) Listeria innocua Clip11262 1130857 NP_471465.1 CDS lin2131 NC_003212.1 2154122 2155576 D similar to L-aspartate oxidase; catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 2154122..2155576 Listeria innocua Clip11262 1130858 NP_471466.1 CDS lin2132 NC_003212.1 2155573 2156418 D similar to nicotinate-nucleotide pyrophosphorylase; catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase 2155573..2156418 Listeria innocua Clip11262 1130859 NP_471467.1 CDS lin2133 NC_003212.1 2156415 2157515 D similar to quinolinate synthetase; 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 2156415..2157515 Listeria innocua Clip11262 1130860 NP_471468.1 CDS lin2134 NC_003212.1 2158281 2159057 R hypothetical protein complement(2158281..2159057) Listeria innocua Clip11262 1130861 NP_471469.1 CDS lin2135 NC_003212.1 2159184 2159474 R hypothetical protein complement(2159184..2159474) Listeria innocua Clip11262 1130862 NP_471470.1 CDS lin2136 NC_003212.1 2159497 2159955 R hypothetical protein complement(2159497..2159955) Listeria innocua Clip11262 1130863 NP_471471.1 CDS lin2137 NC_003212.1 2159959 2160648 R hypothetical protein complement(2159959..2160648) Listeria innocua Clip11262 1130864 NP_471472.1 CDS lin2138 NC_003212.1 2160769 2161947 R highly similar to cell-division initiation protein FtsZ; GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(2160769..2161947) Listeria innocua Clip11262 1130866 NP_471473.1 CDS lin2139 NC_003212.1 2162014 2163288 R highly similar to cell-division protein FtsA; hypothetical protein complement(2162014..2163288) Listeria innocua Clip11262 1130867 NP_471474.1 CDS lin2140 NC_003212.1 2163653 2164465 R similar to cell-division initiation protein divIB; hypothetical protein complement(2163653..2164465) Listeria innocua Clip11262 1130868 NP_471475.1 CDS murG NC_003212.1 2164488 2165579 R similar to peptidoglycan synthesis enzymes, putative phospho-N-acetylmuramoyl-pentapeptide-transferase; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(2164488..2165579) Listeria innocua Clip11262 1130869 NP_471476.1 CDS murD NC_003212.1 2165576 2166943 R similar to UDP-N-acetylmuramoylalanine D-glutamate ligase; UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(2165576..2166943) Listeria innocua Clip11262 1130870 NP_471477.1 CDS mraY NC_003212.1 2167082 2168056 R similar to phospho-N-acetylmuramoyl-pentapeptide transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(2167082..2168056) Listeria innocua Clip11262 1130871 NP_471478.1 CDS murE NC_003212.1 2168103 2169578 R similar to UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(2168103..2169578) Listeria innocua Clip11262 1130872 NP_471479.1 CDS lin2145 NC_003212.1 2169750 2172008 R similar to penicillin-binding protein 2B; hypothetical protein complement(2169750..2172008) Listeria innocua Clip11262 1130873 NP_471480.1 CDS lin2146 NC_003212.1 2172005 2172367 R similar to cell-division protein FtsL; hypothetical protein complement(2172005..2172367) Listeria innocua Clip11262 1130874 NP_471481.1 CDS mraW NC_003212.1 2172384 2173322 R S-adenosyl-methyltransferase MraW complement(2172384..2173322) Listeria innocua Clip11262 1130876 NP_471482.1 CDS lin2148 NC_003212.1 2173335 2173766 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(2173335..2173766) Listeria innocua Clip11262 1130877 NP_471483.1 CDS lin2149 NC_003212.1 2173970 2175217 R similar to integral membrane proteins; hypothetical protein complement(2173970..2175217) Listeria innocua Clip11262 1130878 NP_471484.1 CDS lin2150 NC_003212.1 2175332 2177104 D similar to transporter binding proteins; hypothetical protein 2175332..2177104 Listeria innocua Clip11262 1130879 NP_471485.1 CDS lin2151 NC_003212.1 2177076 2177462 R lin2151; hypothetical protein complement(2177076..2177462) Listeria innocua Clip11262 1130880 NP_471486.1 CDS lin2152 NC_003212.1 2177455 2178360 R weakly similar to ketopantoate reductase involved in thiamin biosynthesis; ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase complement(2177455..2178360) Listeria innocua Clip11262 1130881 NP_471487.1 CDS rpmF NC_003212.1 2178511 2178684 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(2178511..2178684) Listeria innocua Clip11262 1130883 NP_471488.1 CDS lin2154 NC_003212.1 2178776 2179312 R hypothetical protein complement(2178776..2179312) Listeria innocua Clip11262 1130884 NP_471489.1 CDS lin2155 NC_003212.1 2179442 2180617 D hypothetical protein 2179442..2180617 Listeria innocua Clip11262 1130885 NP_471490.1 CDS lin2156 NC_003212.1 2180700 2182940 D similar to excinuclease ABC (subunit A); hypothetical protein 2180700..2182940 Listeria innocua Clip11262 1130886 NP_471491.1 CDS lin2157 NC_003212.1 2182986 2184026 R weakly similar to proteases; hypothetical protein complement(2182986..2184026) Listeria innocua Clip11262 1130887 NP_471492.1 CDS coaD NC_003212.1 2184041 2184526 R similar to phosphopantetheine adenylyltransferase; Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(2184041..2184526) Listeria innocua Clip11262 1130888 NP_471493.1 CDS lin2159 NC_003212.1 2184529 2185086 R hypothetical protein complement(2184529..2185086) Listeria innocua Clip11262 1130889 NP_471494.1 CDS lin2160 NC_003212.1 2185183 2185464 R hypothetical protein complement(2185183..2185464) Listeria innocua Clip11262 1130891 NP_471495.1 CDS lin2161 NC_003212.1 2185495 2185944 R hypothetical protein complement(2185495..2185944) Listeria innocua Clip11262 1130892 NP_471496.1 CDS lin2162 NC_003212.1 2185992 2187047 R hypothetical protein complement(2185992..2187047) Listeria innocua Clip11262 1130893 NP_471497.1 CDS lin2163 NC_003212.1 2187195 2188100 R highly similar to heme A farnesyltransferase; converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(2187195..2188100) Listeria innocua Clip11262 1130894 NP_471498.1 CDS lin2164 NC_003212.1 2188336 2189253 D similar to heme O oxygenase; hypothetical protein 2188336..2189253 Listeria innocua Clip11262 1130895 NP_471499.1 CDS lin2165 NC_003212.1 2189363 2190106 D similar to potassium channel subunit; hypothetical protein 2189363..2190106 Listeria innocua Clip11262 1130896 NP_471500.1 CDS lin2166 NC_003212.1 2190112 2190753 R hypothetical protein complement(2190112..2190753) Listeria innocua Clip11262 1130897 NP_471501.1 CDS lin2167 NC_003212.1 2190772 2191389 R hypothetical protein complement(2190772..2191389) Listeria innocua Clip11262 1130898 NP_471502.1 CDS lin2168 NC_003212.1 2191402 2193027 R similar to copper export proteins; hypothetical protein complement(2191402..2193027) Listeria innocua Clip11262 1130899 NP_471503.1 CDS lin2169 NC_003212.1 2193174 2193365 D lin2169; hypothetical protein 2193174..2193365 Listeria innocua Clip11262 1130900 NP_471504.1 CDS mscL NC_003212.1 2193426 2193812 D similar to large conductance mechanosensitive channel protein; homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 2193426..2193812 Listeria innocua Clip11262 1130901 NP_471505.1 CDS lin2171 NC_003212.1 2193869 2194261 R lin2171; hypothetical protein complement(2193869..2194261) Listeria innocua Clip11262 1130902 NP_471506.1 CDS lin2173 NC_003212.1 2194306 2194515 R lin2173; hypothetical protein complement(2194306..2194515) Listeria innocua Clip11262 1130903 NP_471507.1 CDS groEL NC_003212.1 2194710 2196338 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(2194710..2196338) Listeria innocua Clip11262 1130904 NP_471508.1 CDS groES NC_003212.1 2196371 2196655 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(2196371..2196655) Listeria innocua Clip11262 1130905 NP_471509.1 CDS lin2176 NC_003212.1 2196888 2197574 D hypothetical protein 2196888..2197574 Listeria innocua Clip11262 1130906 NP_471510.1 CDS lin2177 NC_003212.1 2197576 2197773 D lin2177; hypothetical protein 2197576..2197773 Listeria innocua Clip11262 1130908 NP_471511.1 CDS lin2178 NC_003212.1 2197807 2198454 R similar to a putative DNA binding proteins; modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex complement(2197807..2198454) Listeria innocua Clip11262 1130909 NP_471512.1 CDS lin2179 NC_003212.1 2198765 2200717 D similar to ABC transporter (ATP-binding protein); hypothetical protein 2198765..2200717 Listeria innocua Clip11262 1130910 NP_471513.1 CDS lin2180 NC_003212.1 2200742 2201701 D hypothetical protein 2200742..2201701 Listeria innocua Clip11262 1130911 NP_471514.2 CDS lin2181 NC_003212.1 2201778 2202800 R similar to glycoprotein endopeptidase; in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease complement(2201778..2202800) Listeria innocua Clip11262 1130912 NP_471515.1 CDS lin2182 NC_003212.1 2202797 2203252 R similar to ribosomal protein alanine acetyltransferase; hypothetical protein complement(2202797..2203252) Listeria innocua Clip11262 1130913 NP_471516.1 CDS lin2183 NC_003212.1 2203249 2203941 R similar to glycoprotease; hypothetical protein complement(2203249..2203941) Listeria innocua Clip11262 1130915 NP_471517.1 CDS lin2184 NC_003212.1 2203938 2204399 R hypothetical protein complement(2203938..2204399) Listeria innocua Clip11262 1130917 NP_471518.1 CDS lin2185 NC_003212.1 2204505 2205638 R lin2185; hypothetical protein complement(2204505..2205638) Listeria innocua Clip11262 1130918 NP_471519.1 CDS lin2186 NC_003212.1 2205787 2206167 R lin2186; hypothetical protein complement(2205787..2206167) Listeria innocua Clip11262 1130919 NP_471520.1 CDS lin2187 NC_003212.1 2206263 2206619 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(2206263..2206619) Listeria innocua Clip11262 1130920 NP_471521.1 CDS lin2188 NC_003212.1 2206609 2206998 R similar to unknown proetin; may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(2206609..2206998) Listeria innocua Clip11262 1130921 NP_471522.1 CDS lin2189 NC_003212.1 2207105 2207731 R lin2189; hypothetical protein complement(2207105..2207731) Listeria innocua Clip11262 1130923 NP_471523.1 CDS lin2190 NC_003212.1 2207728 2208621 R lin2190; hypothetical protein complement(2207728..2208621) Listeria innocua Clip11262 1130924 NP_471524.1 CDS lin2191 NC_003212.1 2208964 2210244 R weakly similar to transcription regulators; hypothetical protein complement(2208964..2210244) Listeria innocua Clip11262 1130926 NP_471525.1 CDS lin2192 NC_003212.1 2210837 2212168 R hypothetical protein complement(2210837..2212168) Listeria innocua Clip11262 1130927 NP_471526.1 CDS lin2193 NC_003212.1 2212183 2212767 R similar to transcription regulators; hypothetical protein complement(2212183..2212767) Listeria innocua Clip11262 1130928 NP_471527.1 CDS lin2194 NC_003212.1 2212877 2213920 R similar to lipases; hypothetical protein complement(2212877..2213920) Listeria innocua Clip11262 1130929 NP_471528.1 CDS lin2195 NC_003212.1 2214135 2215349 D similar to argininosuccinate synthase; catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 2214135..2215349 Listeria innocua Clip11262 1130930 NP_471529.1 CDS lin2196 NC_003212.1 2215353 2216723 D similar to argininosuccinate lyase; catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 2215353..2216723 Listeria innocua Clip11262 1130931 NP_471530.1 CDS betL NC_003212.1 2216882 2218405 D glycine betaine transporter BetL 2216882..2218405 Listeria innocua Clip11262 1130932 NP_471531.1 CDS lin2198 NC_003212.1 2218650 2219300 R similar to L-fuculose-phosphate aldolase; hypothetical protein complement(2218650..2219300) Listeria innocua Clip11262 1130933 NP_471532.1 CDS lin2199 NC_003212.1 2219302 2220234 R similar to 1-phosphofructokinase; hypothetical protein complement(2219302..2220234) Listeria innocua Clip11262 1130934 NP_471533.1 CDS lin2200 NC_003212.1 2220252 2221601 R similar to PTS system galactitol-specific enzyme IIC component; hypothetical protein complement(2220252..2221601) Listeria innocua Clip11262 1130936 NP_471534.1 CDS lin2201 NC_003212.1 2221629 2221904 R similar to PTS system galactitol-specific enzyme IIB component; hypothetical protein complement(2221629..2221904) Listeria innocua Clip11262 1130937 NP_471535.1 CDS lin2202 NC_003212.1 2221910 2222377 R similar to PTS system galactitol-specific enzyme IIA component; hypothetical protein complement(2221910..2222377) Listeria innocua Clip11262 1130938 NP_471536.1 CDS lin2203 NC_003212.1 2222385 2224391 R similar to transcription antiterminator; hypothetical protein complement(2222385..2224391) Listeria innocua Clip11262 1130940 NP_471537.1 CDS lin2204 NC_003212.1 2224614 2226014 R similar to transcriptional regulator (GntR family) and to aminotransferase (MocR-like); hypothetical protein complement(2224614..2226014) Listeria innocua Clip11262 1130942 NP_471538.1 CDS lin2205 NC_003212.1 2226138 2227025 D similar to a protein required for pyridoxine synthesis; with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS 2226138..2227025 Listeria innocua Clip11262 1130943 NP_471539.1 CDS lin2206 NC_003212.1 2227027 2227593 D lin2206; with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate; glutamine amidotransferase subunit PdxT 2227027..2227593 Listeria innocua Clip11262 1130945 NP_471540.1 CDS eutD NC_003212.1 2227632 2228609 R similar to phosphotransacetylase; in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase complement(2227632..2228609) Listeria innocua Clip11262 1130946 NP_471541.1 CDS lin2208 NC_003212.1 2228929 2229156 D lin2208; hypothetical protein 2228929..2229156 Listeria innocua Clip11262 1130947 NP_471542.1 CDS lin2209 NC_003212.1 2229153 2231147 D similar to ferrous iron transport protein B; hypothetical protein 2229153..2231147 Listeria innocua Clip11262 1130948 NP_471543.1 CDS lin2210 NC_003212.1 2231163 2231336 D lin2210; hypothetical protein 2231163..2231336 Listeria innocua Clip11262 1130949 NP_471544.1 CDS lin2211 NC_003212.1 2231367 2232221 R hypothetical protein complement(2231367..2232221) Listeria innocua Clip11262 1130950 NP_471545.1 CDS lin2212 NC_003212.1 2232441 2233202 D similar to transcriptional regulator (DeoR family); hypothetical protein 2232441..2233202 Listeria innocua Clip11262 1130951 NP_471546.1 CDS lin2213 NC_003212.1 2233208 2234350 D similar to N-acetylglucosamine-6-phosphate deacetylase; hypothetical protein 2233208..2234350 Listeria innocua Clip11262 1130953 NP_471547.1 CDS lin2214 NC_003212.1 2234392 2235189 D similar to hydrolase; hypothetical protein 2234392..2235189 Listeria innocua Clip11262 1130954 NP_471548.1 CDS lin2215 NC_003212.1 2235261 2236217 R similar to mannnose-6 phospate isomerase; hypothetical protein complement(2235261..2236217) Listeria innocua Clip11262 1130955 NP_471549.1 CDS lin2216 NC_003212.1 2236297 2237028 R similar to FMN-containing NADPH-linked nitro/flavin reductase; hypothetical protein complement(2236297..2237028) Listeria innocua Clip11262 1130956 NP_471550.1 CDS lin2217 NC_003212.1 2237151 2237381 D lin2217; hypothetical protein 2237151..2237381 Listeria innocua Clip11262 1130957 NP_471551.1 CDS lin2218 NC_003212.1 2237464 2238219 D putative heme peroxidase 2237464..2238219 Listeria innocua Clip11262 1130958 NP_471552.1 CDS lin2219 NC_003212.1 2238419 2239186 D similar to ABC transporter (ATP-binding protein); hypothetical protein 2238419..2239186 Listeria innocua Clip11262 1130959 NP_471553.1 CDS lin2220 NC_003212.1 2239173 2241113 D similar to ABC transporter (permease); hypothetical protein 2239173..2241113 Listeria innocua Clip11262 1130961 NP_471554.1 CDS lin2221 NC_003212.1 2241131 2241964 R lin2221; hypothetical protein complement(2241131..2241964) Listeria innocua Clip11262 1130962 NP_471555.1 CDS lin2222 NC_003212.1 2242026 2242487 D hypothetical protein 2242026..2242487 Listeria innocua Clip11262 1130963 NP_471556.1 CDS glmM NC_003212.1 2242524 2243876 R similar to phosphoglucomutase; catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(2242524..2243876) Listeria innocua Clip11262 1130964 NP_471557.1 CDS lin2224 NC_003212.1 2244133 2245491 R hypothetical protein complement(2244133..2245491) Listeria innocua Clip11262 1130965 NP_471558.1 CDS lin2225 NC_003212.1 2245491 2246312 R hypothetical protein complement(2245491..2246312) Listeria innocua Clip11262 1130966 NP_471559.1 CDS lin2226 NC_003212.1 2246487 2248748 R similar to maltosephosphorylase; maltose phosphorylase complement(2246487..2248748) Listeria innocua Clip11262 1130968 NP_471560.1 CDS lin2227 NC_003212.1 2248764 2249597 R similar to maltodextrose utilization protein MalA; hypothetical protein complement(2248764..2249597) Listeria innocua Clip11262 1130969 NP_471561.1 CDS lin2228 NC_003212.1 2249625 2250476 R similar to maltodextrin ABC-transport system (permease); hypothetical protein complement(2249625..2250476) Listeria innocua Clip11262 1130970 NP_471562.1 CDS lin2229 NC_003212.1 2250477 2251784 R similar to maltodextrin ABC-transport system (permease); hypothetical protein complement(2250477..2251784) Listeria innocua Clip11262 1130971 NP_471563.1 CDS lin2230 NC_003212.1 2251872 2253131 R similar to maltose/maltodextrin ABC-transporter (binding protein); hypothetical protein complement(2251872..2253131) Listeria innocua Clip11262 1130973 NP_471564.1 CDS lin2231 NC_003212.1 2253346 2255121 R similar to maltogenic amylase; hypothetical protein complement(2253346..2255121) Listeria innocua Clip11262 1130974 NP_471565.1 CDS lin2232 NC_003212.1 2255366 2256001 D lin2232; hypothetical protein 2255366..2256001 Listeria innocua Clip11262 1130975 NP_471566.1 CDS lin2233 NC_003212.1 2256038 2257003 R similar to transcription regulator, LacI family; hypothetical protein complement(2256038..2257003) Listeria innocua Clip11262 1130976 NP_471567.1 CDS lin2234 NC_003212.1 2257142 2257378 R lin2234; hypothetical protein complement(2257142..2257378) Listeria innocua Clip11262 1130978 NP_471568.1 CDS lin2235 NC_003212.1 2257975 2259798 R hypothetical protein complement(2257975..2259798) Listeria innocua Clip11262 1130979 NP_471569.1 CDS lin2236 NC_003212.1 2260785 2261486 R lin2236; hypothetical protein complement(2260785..2261486) Listeria innocua Clip11262 1130980 NP_471570.1 CDS lin2237 NC_003212.1 2261976 2262677 D lin2237; hypothetical protein 2261976..2262677 Listeria innocua Clip11262 1130981 NP_471571.1 CDS lin2238 NC_003212.1 2262719 2263618 R similar to fructose-1,6-biphosphate aldolase type II; hypothetical protein complement(2262719..2263618) Listeria innocua Clip11262 1130982 NP_471572.1 CDS lin2239 NC_003212.1 2263635 2264489 R similar to fructose-1,6-biphosphate aldolase type II; hypothetical protein complement(2263635..2264489) Listeria innocua Clip11262 1130983 NP_471573.1 CDS lin2240 NC_003212.1 2264507 2265598 R similar to PTS system, fructose-specific enzyme IIC component; hypothetical protein complement(2264507..2265598) Listeria innocua Clip11262 1130984 NP_471574.1 CDS lin2241 NC_003212.1 2265615 2265926 R similar to PTS system, fructose-specific enzyme IIB component; hypothetical protein complement(2265615..2265926) Listeria innocua Clip11262 1130985 NP_471575.1 CDS lin2242 NC_003212.1 2265939 2266412 R similar to PTS system, fructose-specific enzyme IIA component; hypothetical protein complement(2265939..2266412) Listeria innocua Clip11262 1130986 NP_471576.1 CDS lin2243 NC_003212.1 2266424 2267881 R similar to transcription regulator; hypothetical protein complement(2266424..2267881) Listeria innocua Clip11262 1130987 NP_471577.1 CDS lin2244 NC_003212.1 2268076 2268978 D similar to ABC transporter (ATP-binding protein); hypothetical protein 2268076..2268978 Listeria innocua Clip11262 1130988 NP_471578.1 CDS lin2245 NC_003212.1 2268971 2270206 D similar to ABC transporter (membrane protein); hypothetical protein 2268971..2270206 Listeria innocua Clip11262 1130989 NP_471579.1 CDS lin2246 NC_003212.1 2270223 2270696 D hypothetical protein 2270223..2270696 Listeria innocua Clip11262 1130990 NP_471580.1 CDS lin2248 NC_003212.1 2271304 2271951 R lin2248; hypothetical protein complement(2271304..2271951) Listeria innocua Clip11262 1130991 NP_471581.1 CDS lin2249 NC_003212.1 2272173 2273189 R hypothetical protein complement(2272173..2273189) Listeria innocua Clip11262 1130992 NP_471582.1 CDS lin2250 NC_003212.1 2273258 2274112 R similar to transcription regulator LysR family; hypothetical protein complement(2273258..2274112) Listeria innocua Clip11262 1130993 NP_471583.1 CDS lin2251 NC_003212.1 2274218 2275225 D hypothetical protein 2274218..2275225 Listeria innocua Clip11262 1130994 NP_471584.1 CDS lin2252 NC_003212.1 2275281 2275922 D hypothetical protein 2275281..2275922 Listeria innocua Clip11262 1130995 NP_471585.1 CDS lin2253 NC_003212.1 2275972 2276289 R hypothetical protein complement(2275972..2276289) Listeria innocua Clip11262 1130996 NP_471586.1 CDS lin2254 NC_003212.1 2276488 2276664 D lin2254; hypothetical protein 2276488..2276664 Listeria innocua Clip11262 1130997 NP_471587.1 CDS lin2255 NC_003212.1 2276709 2277008 R hypothetical protein complement(2276709..2277008) Listeria innocua Clip11262 1130998 NP_471588.1 CDS lin2256 NC_003212.1 2277115 2277441 R similar to thioredoxin; hypothetical protein complement(2277115..2277441) Listeria innocua Clip11262 1130999 NP_471589.1 CDS lin2257 NC_003212.1 2277438 2277875 R similar to flavodoxin; An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(2277438..2277875) Listeria innocua Clip11262 1131000 NP_471590.1 CDS nrdF NC_003212.1 2277872 2278921 R similar to ribonucleoside-diphosphate reductase, subunit beta; B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta complement(2277872..2278921) Listeria innocua Clip11262 1131002 NP_471591.1 CDS lin2259 NC_003212.1 2278977 2281268 R similar to ribonucleoside-diphosphate reductase, subunit alpha; Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(2278977..2281268) Listeria innocua Clip11262 1131003 NP_471592.1 CDS lin2260 NC_003212.1 2281803 2282144 D lin2260; hypothetical protein 2281803..2282144 Listeria innocua Clip11262 1131004 NP_471593.1 CDS lin2261 NC_003212.1 2282302 2282487 R similar to Bacillus subtilis YwmG protein; hypothetical protein complement(2282302..2282487) Listeria innocua Clip11262 1131005 NP_471594.1 CDS lin2262 NC_003212.1 2282582 2283631 R similar to oxidoreductase; hypothetical protein complement(2282582..2283631) Listeria innocua Clip11262 1131006 NP_471595.1 CDS lin2263 NC_003212.1 2283654 2284622 R hypothetical protein complement(2283654..2284622) Listeria innocua Clip11262 1131007 NP_471596.1 CDS lin2264 NC_003212.1 2284625 2285347 R lin2264; hypothetical protein complement(2284625..2285347) Listeria innocua Clip11262 1131008 NP_471597.1 CDS lin2265 NC_003212.1 2285349 2286089 R hypothetical protein complement(2285349..2286089) Listeria innocua Clip11262 1131010 NP_471598.1 CDS lin2266 NC_003212.1 2286105 2287181 R similar to oxidoreductase; hypothetical protein complement(2286105..2287181) Listeria innocua Clip11262 1131012 NP_471599.1 CDS lin2267 NC_003212.1 2287256 2288134 R similar to transcriptional regulator (AraC/XylS family); hypothetical protein complement(2287256..2288134) Listeria innocua Clip11262 1131013 NP_471600.1 CDS lin2268 NC_003212.1 2288203 2288898 R similar to transcription regulator CRP/FNR family; hypothetical protein complement(2288203..2288898) Listeria innocua Clip11262 1131014 NP_471601.1 CDS lin2269 NC_003212.1 2289151 2289822 R lin2269; hypothetical protein complement(2289151..2289822) Listeria innocua Clip11262 1131015 NP_471602.1 CDS lin2270 NC_003212.1 2289887 2290504 R hypothetical protein complement(2289887..2290504) Listeria innocua Clip11262 1131016 NP_471603.1 CDS lin2271 NC_003212.1 2290636 2291025 D similar to glyoxalase I; hypothetical protein 2290636..2291025 Listeria innocua Clip11262 1131017 NP_471604.1 CDS lin2272 NC_003212.1 2291051 2291209 D lin2272; hypothetical protein 2291051..2291209 Listeria innocua Clip11262 1131018 NP_471605.1 CDS lin2273 NC_003212.1 2291254 2292183 R hypothetical protein complement(2291254..2292183) Listeria innocua Clip11262 1131019 NP_471606.1 CDS lin2274 NC_003212.1 2292205 2293428 R similar to antiporter proteins; hypothetical protein complement(2292205..2293428) Listeria innocua Clip11262 1131020 NP_471607.1 CDS lin2275 NC_003212.1 2293425 2295008 R similar to propionate CoA-transferase; hypothetical protein complement(2293425..2295008) Listeria innocua Clip11262 1131021 NP_471608.1 CDS lin2276 NC_003212.1 2295238 2296605 R similar to sigma-54-dependent transcriptional activator; hypothetical protein complement(2295238..2296605) Listeria innocua Clip11262 1131023 NP_471609.1 CDS lin2277 NC_003212.1 2296711 2297784 R hypothetical protein complement(2296711..2297784) Listeria innocua Clip11262 1131024 NP_471610.1 CDS fabG NC_003212.1 2297962 2298723 R similar to dehydrogenase; Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase complement(2297962..2298723) Listeria innocua Clip11262 1131025 NP_471611.1 CDS lin2279 NC_003212.1 2298908 2299471 D similar to transcriptional regulator (tetR family); hypothetical protein 2298908..2299471 Listeria innocua Clip11262 1131026 NP_471612.1 CDS lin2280 NC_003212.1 2299577 2299924 D hypothetical protein 2299577..2299924 Listeria innocua Clip11262 1131027 NP_471613.1 CDS lin2281 NC_003212.1 2299966 2304834 R cell surface protein complement(2299966..2304834) Listeria innocua Clip11262 1131028 NP_471614.1 CDS lin2282 NC_003212.1 2305104 2310524 R peptidoglycan binding protein complement(2305104..2310524) Listeria innocua Clip11262 1131029 NP_471615.1 CDS lin2283 NC_003212.1 2310705 2314160 R peptidoglycan binding protein complement(2310705..2314160) Listeria innocua Clip11262 1131030 NP_471616.1 CDS lin2284 NC_003212.1 2314353 2314829 R hypothetical protein complement(2314353..2314829) Listeria innocua Clip11262 1131031 NP_471617.1 CDS lin2285 NC_003212.1 2314890 2315630 R hypothetical protein complement(2314890..2315630) Listeria innocua Clip11262 1131032 NP_471618.1 CDS lin2286 NC_003212.1 2315634 2316413 R similar to ferrichrome ABC transporter (ATP-binding protein); hypothetical protein complement(2315634..2316413) Listeria innocua Clip11262 1131033 NP_471619.1 CDS lin2287 NC_003212.1 2316394 2317383 R similar to ferrichrome ABC transporter (permease); hypothetical protein complement(2316394..2317383) Listeria innocua Clip11262 1131035 NP_471620.1 CDS lin2288 NC_003212.1 2317373 2318248 R similar to ferrichrome ABC transporter (binding protein); hypothetical protein complement(2317373..2318248) Listeria innocua Clip11262 1131037 NP_471621.1 CDS lin2289 NC_003212.1 2318332 2320053 R lin2289; hypothetical protein complement(2318332..2320053) Listeria innocua Clip11262 1131038 NP_471622.1 CDS lin2290 NC_003212.1 2320066 2320692 R lin2290; hypothetical protein complement(2320066..2320692) Listeria innocua Clip11262 1131039 NP_471623.1 CDS lin2291 NC_003212.1 2320908 2321174 R lin2291; hypothetical protein complement(2320908..2321174) Listeria innocua Clip11262 1131040 NP_471624.1 CDS lin2292 NC_003212.1 2321485 2323290 R similar to oligoendopeptidase; hypothetical protein complement(2321485..2323290) Listeria innocua Clip11262 1131041 NP_471625.1 CDS lin2293 NC_003212.1 2323363 2324478 R similar to a putative competence protein from streptococcus pneumoniae; hypothetical protein complement(2323363..2324478) Listeria innocua Clip11262 1131042 NP_471626.1 CDS mecA NC_003212.1 2324605 2325258 R enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence; adaptor protein complement(2324605..2325258) Listeria innocua Clip11262 1131043 NP_471627.1 CDS spxA NC_003212.1 2325480 2325875 R the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress; transcriptional regulator Spx complement(2325480..2325875) Listeria innocua Clip11262 1131044 NP_471628.1 CDS lin2296 NC_003212.1 2326195 2327163 R similar to oligopeptide ABC transporter (ATP-binding protein); hypothetical protein complement(2326195..2327163) Listeria innocua Clip11262 1131045 NP_471629.1 CDS lin2297 NC_003212.1 2327160 2328236 R similar to oligopeptide ABC transporter (ATP-binding protein); hypothetical protein complement(2327160..2328236) Listeria innocua Clip11262 1131046 NP_471630.1 CDS lin2298 NC_003212.1 2328254 2329288 R similar to oligopeptide ABC transporter (permease); hypothetical protein complement(2328254..2329288) Listeria innocua Clip11262 1131048 NP_471631.1 CDS lin2299 NC_003212.1 2329288 2330217 R similar to oligopeptide ABC transporter (permease); hypothetical protein complement(2329288..2330217) Listeria innocua Clip11262 1131049 NP_471632.1 CDS lin2300 NC_003212.1 2330495 2332174 R similar to pheromone ABC transporter (binding protein); hypothetical protein complement(2330495..2332174) Listeria innocua Clip11262 1131051 NP_471633.1 CDS trpS NC_003212.1 2333479 2334474 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 2333479..2334474 Listeria innocua Clip11262 1131052 NP_471634.1 CDS lin2302 NC_003212.1 2334524 2334940 R hypothetical protein complement(2334524..2334940) Listeria innocua Clip11262 1131053 NP_471635.1 CDS lin2303 NC_003212.1 2334924 2335376 R similar to transcription regulator; hypothetical protein complement(2334924..2335376) Listeria innocua Clip11262 1131054 NP_471636.1 CDS lin2304 NC_003212.1 2335496 2336737 R similar to 3-oxoacyl-acyl-carrier protein synthase; hypothetical protein complement(2335496..2336737) Listeria innocua Clip11262 1131056 NP_471637.1 CDS lin2305 NC_003212.1 2336940 2337878 R similar to 3-oxoacyl- acyl-carrier protein synthase; FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III complement(2336940..2337878) Listeria innocua Clip11262 1131057 NP_471638.1 CDS lin2306 NC_003212.1 2337994 2339121 R similar to N-acetylmuramoyl-L-alanine amidase and to internalin B; hypothetical protein complement(2337994..2339121) Listeria innocua Clip11262 1131058 NP_471639.1 CDS lin2307 NC_003212.1 2339444 2339632 D hypothetical protein 2339444..2339632 Listeria innocua Clip11262 1131059 NP_471640.1 CDS lin2308 NC_003212.1 2339722 2340411 R similar to phosphoglyceromutase 1; hypothetical protein complement(2339722..2340411) Listeria innocua Clip11262 1131060 NP_471641.1 CDS lin2309 NC_003212.1 2340502 2343102 R similar to endopeptidase Clp ATP-binding chain B (ClpB); hypothetical protein complement(2340502..2343102) Listeria innocua Clip11262 1131061 NP_471642.1 CDS lin2310 NC_003212.1 2343250 2343927 R hypothetical protein complement(2343250..2343927) Listeria innocua Clip11262 1131062 NP_471643.1 CDS lin2311 NC_003212.1 2344039 2344809 R hypothetical protein complement(2344039..2344809) Listeria innocua Clip11262 1131063 NP_471644.1 CDS lin2312 NC_003212.1 2344873 2345658 R lin2312; hypothetical protein complement(2344873..2345658) Listeria innocua Clip11262 1131064 NP_471645.1 CDS lin2313 NC_003212.1 2345780 2346124 R lin2313; hypothetical protein complement(2345780..2346124) Listeria innocua Clip11262 1131065 NP_471646.1 CDS hemH NC_003212.1 2346278 2347207 R similar to ferrochelatase; protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(2346278..2347207) Listeria innocua Clip11262 1131066 NP_471647.1 CDS hemE NC_003212.1 2347214 2348266 R similar to uroporphyrinogen III decarboxylase; catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(2347214..2348266) Listeria innocua Clip11262 1131067 NP_471648.1 CDS lin2316 NC_003212.1 2348463 2348966 D hypothetical protein 2348463..2348966 Listeria innocua Clip11262 1131068 NP_471649.1 CDS lin2317 NC_003212.1 2349005 2350228 R similar to ABC transporter (membrane protein); hypothetical protein complement(2349005..2350228) Listeria innocua Clip11262 1131069 NP_471650.1 CDS lin2318 NC_003212.1 2350212 2350964 R similar to ABC transporter (ATP-binding protein); hypothetical protein complement(2350212..2350964) Listeria innocua Clip11262 1131070 NP_471651.1 CDS lin2319 NC_003212.1 2351125 2351547 D similar to histidine triad (HIT) protein; hypothetical protein 2351125..2351547 Listeria innocua Clip11262 1131072 NP_471652.1 CDS lin2320 NC_003212.1 2351577 2351939 D hypothetical protein 2351577..2351939 Listeria innocua Clip11262 1131073 NP_471653.1 CDS lin2321 NC_003212.1 2352119 2352658 D lin2321; hypothetical protein 2352119..2352658 Listeria innocua Clip11262 1131074 NP_471654.1 CDS lin2322 NC_003212.1 2352775 2353650 D similar to post-translocation molecular chaperone; hypothetical protein 2352775..2353650 Listeria innocua Clip11262 1131075 NP_471655.1 CDS lin2323 NC_003212.1 2353740 2354681 R similar to S. aureus Cbf1 protein; catalyzes the exonucleic cleavage of mRNA yielding nucleioside 5'-phosphates; 3'-5' exoribonuclease YhaM complement(2353740..2354681) Listeria innocua Clip11262 1131076 NP_471656.1 CDS lin2324 NC_003212.1 2354726 2357452 R hypothetical protein complement(2354726..2357452) Listeria innocua Clip11262 1131077 NP_471657.1 CDS lin2325 NC_003212.1 2357449 2358684 R hypothetical protein complement(2357449..2358684) Listeria innocua Clip11262 1131078 NP_471658.1 CDS lin2326 NC_003212.1 2358828 2359181 R hypothetical protein complement(2358828..2359181) Listeria innocua Clip11262 1131080 NP_471659.1 CDS lin2327 NC_003212.1 2359263 2360396 R hypothetical protein complement(2359263..2360396) Listeria innocua Clip11262 1131081 NP_471660.1 CDS fumC NC_003212.1 2360500 2361867 R similar to fumarate hydratase; class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(2360500..2361867) Listeria innocua Clip11262 1131082 NP_471661.1 CDS lin2330 NC_003212.1 2362731 2363633 R similar to ABC transporter (ATP-binding protein); hypothetical protein complement(2362731..2363633) Listeria innocua Clip11262 1131083 NP_471662.1 CDS lin2331 NC_003212.1 2363936 2366080 R similar to penicillin-binding protein; hypothetical protein complement(2363936..2366080) Listeria innocua Clip11262 1131085 NP_471663.1 CDS lin2332 NC_003212.1 2366404 2366829 D similar to arsenate reductase; hypothetical protein 2366404..2366829 Listeria innocua Clip11262 1131086 NP_471664.1 CDS lin2333 NC_003212.1 2366892 2367761 D hypothetical protein 2366892..2367761 Listeria innocua Clip11262 1131087 NP_471665.1 CDS lin2334 NC_003212.1 2368019 2369323 D hypothetical protein 2368019..2369323 Listeria innocua Clip11262 1131088 NP_471666.1 CDS lin2335 NC_003212.1 2369364 2370242 R similar to transcriptional regulators (LysR family); hypothetical protein complement(2369364..2370242) Listeria innocua Clip11262 1131089 NP_471667.1 CDS lin2336 NC_003212.1 2370543 2371397 D hypothetical protein 2370543..2371397 Listeria innocua Clip11262 1131090 NP_471668.1 CDS lin2337 NC_003212.1 2371467 2373392 D similar to NADH oxidase; hypothetical protein 2371467..2373392 Listeria innocua Clip11262 1131091 NP_471669.1 CDS lin2338 NC_003212.1 2373452 2374321 D similar to oxidoreductase; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 2373452..2374321 Listeria innocua Clip11262 1131092 NP_471670.1 CDS lin2339 NC_003212.1 2374354 2375562 D similar to transport system permease protein; hypothetical protein 2374354..2375562 Listeria innocua Clip11262 1131093 NP_471671.1 CDS lin2340 NC_003212.1 2375722 2376912 D similar to transport system permease protein; hypothetical protein 2375722..2376912 Listeria innocua Clip11262 1131094 NP_471672.1 CDS lin2341 NC_003212.1 2376957 2378021 R lin2341; hypothetical protein complement(2376957..2378021) Listeria innocua Clip11262 1131095 NP_471673.1 CDS lin2342 NC_003212.1 2378021 2378896 R similar to ABC transporter (ATP-binding protein); hypothetical protein complement(2378021..2378896) Listeria innocua Clip11262 1131096 NP_471674.1 CDS lin2343 NC_003212.1 2378893 2379282 R similar to transcriptional regulators (GntR family); hypothetical protein complement(2378893..2379282) Listeria innocua Clip11262 1131098 NP_471675.1 CDS lin2344 NC_003212.1 2379374 2379856 R similar to O6-methylguanine-DNA methyltransferase; hypothetical protein complement(2379374..2379856) Listeria innocua Clip11262 1131100 NP_471676.1 CDS lin2345 NC_003212.1 2380002 2380556 D similar to methylphosphotriester-DNA alkyltransferase and transcriptional regulator; hypothetical protein 2380002..2380556 Listeria innocua Clip11262 1131101 NP_471677.1 CDS lin2346 NC_003212.1 2380578 2381447 D similar to putative ribosomal large subunit pseudouridine synthase; hypothetical protein 2380578..2381447 Listeria innocua Clip11262 1131102 NP_471678.1 CDS lin2347 NC_003212.1 2381460 2381852 R hypothetical protein complement(2381460..2381852) Listeria innocua Clip11262 1131103 NP_471679.1 CDS lin2348 NC_003212.1 2381854 2382510 R hypothetical protein complement(2381854..2382510) Listeria innocua Clip11262 1131104 NP_471680.1 CDS lin2349 NC_003212.1 2382507 2383391 R similar to oxidoreductase; hypothetical protein complement(2382507..2383391) Listeria innocua Clip11262 1131105 NP_471681.1 CDS lin2350 NC_003212.1 2383777 2384397 D hypothetical protein 2383777..2384397 Listeria innocua Clip11262 1131107 NP_471682.1 CDS lin2351 NC_003212.1 2384411 2385409 D similar to low-affinity inorganic phosphate transporter; hypothetical protein 2384411..2385409 Listeria innocua Clip11262 1131108 NP_471683.1 CDS lin2352 NC_003212.1 2385601 2387061 D similar to amino acid ABC transporter, permease protein; hypothetical protein 2385601..2387061 Listeria innocua Clip11262 1131109 NP_471684.1 CDS lin2353 NC_003212.1 2387054 2387779 D similar to amino acid ABC transporter (ATP-binding protein); hypothetical protein 2387054..2387779 Listeria innocua Clip11262 1131111 NP_471685.1 CDS lin2354 NC_003212.1 2387853 2389004 D similar to aspartate aminotransferase; catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 2387853..2389004 Listeria innocua Clip11262 1131112 NP_471686.1 CDS lin2355 NC_003212.1 2389048 2389677 R similar to phosphoglucomutase; hypothetical protein complement(2389048..2389677) Listeria innocua Clip11262 1131113 NP_471687.1 CDS lin2356 NC_003212.1 2389850 2391142 D hypothetical protein 2389850..2391142 Listeria innocua Clip11262 1131114 NP_471688.1 CDS lin2357 NC_003212.1 2391252 2391518 D lin2357; hypothetical protein 2391252..2391518 Listeria innocua Clip11262 1131115 NP_471689.1 CDS lin2358 NC_003212.1 2391559 2392080 R hypothetical protein complement(2391559..2392080) Listeria innocua Clip11262 1131117 NP_471690.1 CDS lin2359 NC_003212.1 2392582 2392773 R lin2359; hypothetical protein complement(2392582..2392773) Listeria innocua Clip11262 1131118 NP_471691.1 CDS lin2360 NC_003212.1 2392925 2393278 D similar to phosphotransferase system (PTS) beta-glucoside-specific enzyme IIA; hypothetical protein 2392925..2393278 Listeria innocua Clip11262 1131119 NP_471692.1 CDS lin2361 NC_003212.1 2393275 2394150 R hypothetical protein complement(2393275..2394150) Listeria innocua Clip11262 1131120 NP_471693.1 CDS lin2362 NC_003212.1 2394228 2394536 R hypothetical protein complement(2394228..2394536) Listeria innocua Clip11262 1131121 NP_471694.1 CDS lin2363 NC_003212.1 2394601 2395353 R hypothetical protein complement(2394601..2395353) Listeria innocua Clip11262 1131122 NP_471695.1 CDS lin2364 NC_003212.1 2395504 2396316 D similar to unkown proteins; hypothetical protein 2395504..2396316 Listeria innocua Clip11262 1131123 NP_471696.1 CDS lin2365 NC_003212.1 2396393 2397295 R hypothetical protein complement(2396393..2397295) Listeria innocua Clip11262 1131124 NP_471697.1 CDS lin2366 NC_003212.1 2397379 2397741 R hypothetical protein complement(2397379..2397741) Listeria innocua Clip11262 1131125 NP_471698.1 CDS lin2367 NC_003212.1 2397761 2398609 R hypothetical protein complement(2397761..2398609) Listeria innocua Clip11262 1131126 NP_471699.1 CDS lin2368 NC_003212.1 2398610 2402317 R similar to ATP-dependent deoxyribonuclease (subunit A); hypothetical protein complement(2398610..2402317) Listeria innocua Clip11262 1131127 NP_471700.1 CDS lin2369 NC_003212.1 2402319 2405792 R similar to ATP-dependent deoxyribonuclease (subunit B); hypothetical protein complement(2402319..2405792) Listeria innocua Clip11262 1131129 NP_471701.1 CDS lin2370 NC_003212.1 2405942 2406178 R lin2370; hypothetical protein complement(2405942..2406178) Listeria innocua Clip11262 1131131 NP_471702.1 CDS lin2371 NC_003212.1 2406428 2406718 D similar to competence transcription factor ComK, N terminal part; comK' 2406428..2406718 Listeria innocua Clip11262 1131132 NP_471703.1 CDS lin2372 NC_003212.1 2406902 2407135 R lin2372; hypothetical protein complement(2406902..2407135) Listeria innocua Clip11262 1131133 NP_471704.1 CDS lin2373 NC_003212.1 2407382 2408278 R similar to AbiD phage protein; hypothetical protein complement(2407382..2408278) Listeria innocua Clip11262 1131134 NP_471705.1 CDS lin2374 NC_003212.1 2408641 2409591 R similar to N-acetylmuramoyl-L-alanine amidase (N-terminal part) and to L-alanoyl-D-glutamate peptidase (C-terminal part); hypothetical protein complement(2408641..2409591) Listeria innocua Clip11262 1131135 NP_471706.1 CDS lin2375 NC_003212.1 2409591 2409872 R similar to phage related proteins; hypothetical protein complement(2409591..2409872) Listeria innocua Clip11262 1131136 NP_471707.1 CDS lin2376 NC_003212.1 2409872 2410177 R lin2376; hypothetical protein complement(2409872..2410177) Listeria innocua Clip11262 1131138 NP_471708.1 CDS lin2377 NC_003212.1 2410218 2410364 R lin2377; hypothetical protein complement(2410218..2410364) Listeria innocua Clip11262 1131140 NP_471709.1 CDS lin2378 NC_003212.1 2410365 2410706 R lin2378; hypothetical protein complement(2410365..2410706) Listeria innocua Clip11262 1131141 NP_471710.1 CDS lin2379 NC_003212.1 2410703 2411776 R similar to protein gp20 [Bacteriophage A118]; hypothetical protein complement(2410703..2411776) Listeria innocua Clip11262 1131143 NP_471711.1 CDS lin2380 NC_003212.1 2411773 2412801 R similar to protein gp19 [Bacteriophage A118]; hypothetical protein complement(2411773..2412801) Listeria innocua Clip11262 1131145 NP_471712.1 CDS lin2381 NC_003212.1 2412798 2413811 R similar to protein R372 - Lactobacillus phage phi-gle; hypothetical protein complement(2412798..2413811) Listeria innocua Clip11262 1131147 NP_471713.1 CDS lin2382 NC_003212.1 2413824 2414648 R similar to gp17 [Bacteriophage A118]; hypothetical protein complement(2413824..2414648) Listeria innocua Clip11262 1131149 NP_471714.1 CDS lin2383 NC_003212.1 2414652 2419457 R similar to hypothetical protein [Lactobacillus casei bacteriophage A2]; hypothetical protein complement(2414652..2419457) Listeria innocua Clip11262 1131150 NP_471715.1 CDS lin2384 NC_003212.1 2419770 2420201 R lin2384; hypothetical protein complement(2419770..2420201) Listeria innocua Clip11262 1131152 NP_471716.1 CDS lin2385 NC_003212.1 2420251 2420937 R similar to protein gp13 [Bacteriophage A118]; hypothetical protein complement(2420251..2420937) Listeria innocua Clip11262 1131153 NP_471717.1 CDS lin2386 NC_003212.1 2420942 2421313 R lin2386; hypothetical protein complement(2420942..2421313) Listeria innocua Clip11262 1131154 NP_471718.1 CDS lin2387 NC_003212.1 2421617 2421982 R lin2387; hypothetical protein complement(2421617..2421982) Listeria innocua Clip11262 1131156 NP_471719.1 CDS lin2388 NC_003212.1 2421982 2422335 R lin2388; hypothetical protein complement(2421982..2422335) Listeria innocua Clip11262 1131157 NP_471720.1 CDS lin2389 NC_003212.1 2422336 2422491 R lin2389; hypothetical protein complement(2422336..2422491) Listeria innocua Clip11262 1131159 NP_471721.1 CDS lin2390 NC_003212.1 2422505 2423377 R similar to main capsid protein Gp34 - Lactobacillus delbrueckii subsp. bulgaricus phage mv4; hypothetical protein complement(2422505..2423377) Listeria innocua Clip11262 1131161 NP_471722.1 CDS lin2391 NC_003212.1 2423400 2423954 R lin2391; hypothetical protein complement(2423400..2423954) Listeria innocua Clip11262 1131162 NP_471723.1 CDS lin2392 NC_003212.1 2424049 2425092 R similar to protein gp4 [Bacteriophage A118]; hypothetical protein complement(2424049..2425092) Listeria innocua Clip11262 1131163 NP_471724.1 CDS lin2393 NC_003212.1 2425097 2426653 R lin2393; hypothetical protein complement(2425097..2426653) Listeria innocua Clip11262 1131164 NP_471725.1 CDS lin2394 NC_003212.1 2426668 2427987 R lin2394; hypothetical protein complement(2426668..2427987) Listeria innocua Clip11262 1131166 NP_471726.1 CDS lin2395 NC_003212.1 2427980 2428720 R some similarities to phage-related terminase small subunit homolog yqaS; hypothetical protein complement(2427980..2428720) Listeria innocua Clip11262 1131167 NP_471727.1 CDS lin2396 NC_003212.1 2428760 2428987 R lin2396; hypothetical protein complement(2428760..2428987) Listeria innocua Clip11262 1131169 NP_471728.1 CDS lin2397 NC_003212.1 2429269 2429841 R similar to sigma factor-like positive control protein of Bacillus subtilis; Positive regulatory protein that acts at the late promoter PL; positive control sigma-like factor complement(2429269..2429841) Listeria innocua Clip11262 1131170 NP_471729.1 CDS lin2398 NC_003212.1 2429929 2430084 R hypothetical protein complement(2429929..2430084) Listeria innocua Clip11262 1131171 NP_471730.1 CDS lin2399 NC_003212.1 2430125 2430508 R lin2399; hypothetical protein complement(2430125..2430508) Listeria innocua Clip11262 1131172 NP_471731.1 CDS lin2400 NC_003212.1 2430512 2430916 R similar to Lactococcus lactis prophage pi3 protein 45; hypothetical protein complement(2430512..2430916) Listeria innocua Clip11262 1131173 NP_471732.1 CDS lin2401 NC_003212.1 2430861 2431043 R lin2401; hypothetical protein complement(2430861..2431043) Listeria innocua Clip11262 1131175 NP_471733.1 CDS lin2402 NC_003212.1 2431065 2431547 R similar to single-stranded DNA-binding protein; hypothetical protein complement(2431065..2431547) Listeria innocua Clip11262 1131177 NP_471734.1 CDS lin2403 NC_003212.1 2431924 2432103 R lin2403; hypothetical protein complement(2431924..2432103) Listeria innocua Clip11262 1131178 NP_471735.1 CDS lin2404 NC_003212.1 2432100 2432270 R lin2404; hypothetical protein complement(2432100..2432270) Listeria innocua Clip11262 1131179 NP_471736.1 CDS lin2405 NC_003212.1 2432412 2432621 R lin2405; hypothetical protein complement(2432412..2432621) Listeria innocua Clip11262 1131181 NP_471737.1 CDS lin2406 NC_003212.1 2432836 2432982 R Protein gp52 [Bacteriophage A118]; protein gp52 complement(2432836..2432982) Listeria innocua Clip11262 1131182 NP_471738.1 CDS lin2408 NC_003212.1 2433490 2433720 R lin2408; hypothetical protein complement(2433490..2433720) Listeria innocua Clip11262 1131184 NP_471739.1 CDS lin2409 NC_003212.1 2433733 2434677 R similar to intrgase proteins; hypothetical protein complement(2433733..2434677) Listeria innocua Clip11262 1131185 NP_471740.1 CDS lin2410 NC_003212.1 2434688 2435401 R similar to phage related proteins; hypothetical protein complement(2434688..2435401) Listeria innocua Clip11262 1131186 NP_471741.1 CDS lin2411 NC_003212.1 2435422 2435697 R lin2411; hypothetical protein complement(2435422..2435697) Listeria innocua Clip11262 1131187 NP_471742.1 CDS lin2412 NC_003212.1 2435694 2436626 R highly similar to gp49 [Bacteriophage A118]; hypothetical protein complement(2435694..2436626) Listeria innocua Clip11262 1131188 NP_471743.1 CDS lin2413 NC_003212.1 2436646 2437461 R highly similar to putative recombinase [Bacteriophage A118]; hypothetical protein complement(2436646..2437461) Listeria innocua Clip11262 1131190 NP_471744.1 CDS lin2414 NC_003212.1 2437461 2438420 R gp47 [Bacteriophage A118]; hypothetical protein complement(2437461..2438420) Listeria innocua Clip11262 1131191 NP_471745.1 CDS lin2415 NC_003212.1 2438652 2438840 R lin2415; hypothetical protein complement(2438652..2438840) Listeria innocua Clip11262 1131193 NP_471746.1 CDS lin2416 NC_003212.1 2438948 2439163 R gp44 [Bacteriophage A118]; gp44 complement(2438948..2439163) Listeria innocua Clip11262 1131194 NP_471747.1 CDS lin2417 NC_003212.1 2439160 2439693 R gp43 [Bacteriophage A118]; hypothetical protein complement(2439160..2439693) Listeria innocua Clip11262 1131195 NP_471748.1 CDS lin2418 NC_003212.1 2439816 2440586 R similar to anti-repressor; hypothetical protein complement(2439816..2440586) Listeria innocua Clip11262 1131197 NP_471749.1 CDS lin2419 NC_003212.1 2440885 2441046 R lin2419; hypothetical protein complement(2440885..2441046) Listeria innocua Clip11262 1131198 NP_471750.1 CDS lin2420 NC_003212.1 2441046 2441312 R similar to Bacteriophage A118 protein gp40; hypothetical protein complement(2441046..2441312) Listeria innocua Clip11262 1131199 NP_471751.1 CDS lin2421 NC_003212.1 2441522 2441773 R lin2421; hypothetical protein complement(2441522..2441773) Listeria innocua Clip11262 1131201 NP_471752.1 CDS lin2422 NC_003212.1 2441922 2442404 D similar to Bacteriophage A118 putative repressor protein; hypothetical protein 2441922..2442404 Listeria innocua Clip11262 1131202 NP_471753.1 CDS lin2423 NC_003212.1 2442784 2443002 D similar to Bacteriophage A118 protein gp34; hypothetical protein 2442784..2443002 Listeria innocua Clip11262 1131203 NP_471754.1 CDS lin2424 NC_003212.1 2443018 2443740 D similar to protein gp33 [Bacteriophage A118]; hypothetical protein 2443018..2443740 Listeria innocua Clip11262 1131204 NP_471755.1 CDS lin2425 NC_003212.1 2443761 2444468 D lin2425; hypothetical protein 2443761..2444468 Listeria innocua Clip11262 1131205 NP_471756.1 CDS int NC_003212.1 2444533 2445891 D putative integrase [Bacteriophage A118]; putative integrase 2444533..2445891 Listeria innocua Clip11262 1131206 NP_471757.1 CDS comK NC_003212.1 2445882 2446349 D competence transcription factor (C-terminal part) 2445882..2446349 Listeria innocua Clip11262 1131207 NP_471758.1 CDS lin2428 NC_003212.1 2446397 2446744 R similar to transcriptional regulator; hypothetical protein complement(2446397..2446744) Listeria innocua Clip11262 1131208 NP_471759.1 CDS lin2429 NC_003212.1 2446851 2448749 R highly similar to phosphotransferase system (PTS) fructose-specific enzyme IIABC component; hypothetical protein complement(2446851..2448749) Listeria innocua Clip11262 1131209 NP_471760.1 CDS fruB NC_003212.1 2448751 2449674 R fructose-1-phosphate kinase complement(2448751..2449674) Listeria innocua Clip11262 1131210 NP_471761.1 CDS lin2431 NC_003212.1 2449671 2450423 R similar to regulatory protein DeoR family; hypothetical protein complement(2449671..2450423) Listeria innocua Clip11262 1131212 NP_471762.1 CDS pepC NC_003212.1 2450639 2451964 D aminopeptidase C 2450639..2451964 Listeria innocua Clip11262 1131214 NP_471763.1 CDS lin2433 NC_003212.1 2451961 2452404 R hypothetical protein complement(2451961..2452404) Listeria innocua Clip11262 1131215 NP_471764.1 CDS lin2434 NC_003212.1 2452484 2453395 R similar to Erwinia chrysanthemi IndA protein; hypothetical protein complement(2452484..2453395) Listeria innocua Clip11262 1131216 NP_471765.1 CDS lin2435 NC_003212.1 2453392 2454510 R similar to carbohydrate kinases; hypothetical protein complement(2453392..2454510) Listeria innocua Clip11262 1131217 NP_471766.1 CDS lin2436 NC_003212.1 2454642 2455343 R similar to 16S pseudouridylate synthase; hypothetical protein complement(2454642..2455343) Listeria innocua Clip11262 1131219 NP_471767.1 CDS lin2437 NC_003212.1 2455415 2456737 R similar to nitrilotriacetate monooxygenase; hypothetical protein complement(2455415..2456737) Listeria innocua Clip11262 1131220 NP_471768.1 CDS lin2438 NC_003212.1 2456734 2457000 R similar to Bacillus subtilis YtnI protein; hypothetical protein complement(2456734..2457000) Listeria innocua Clip11262 1131221 NP_471769.1 CDS lin2439 NC_003212.1 2456993 2457988 R hypothetical protein complement(2456993..2457988) Listeria innocua Clip11262 1131223 NP_471770.1 CDS lin2440 NC_003212.1 2457985 2458764 R similar to amino acid ABC-transporter, ATP-binding protein; hypothetical protein complement(2457985..2458764) Listeria innocua Clip11262 1131225 NP_471771.1 CDS lin2441 NC_003212.1 2458761 2459468 R similar to amino acid ABC transporter (permease); hypothetical protein complement(2458761..2459468) Listeria innocua Clip11262 1131227 NP_471772.1 CDS lin2442 NC_003212.1 2459482 2460198 R similar to amino acid ABC-transporter (permease); hypothetical protein complement(2459482..2460198) Listeria innocua Clip11262 1131229 NP_471773.1 CDS lin2443 NC_003212.1 2460220 2461029 R similar to amino acid ABC transporter (binding protein); hypothetical protein complement(2460220..2461029) Listeria innocua Clip11262 1131230 NP_471774.1 CDS lin2444 NC_003212.1 2461046 2461582 R similar to Bacillus subtilis YtmI protein; hypothetical protein complement(2461046..2461582) Listeria innocua Clip11262 1131231 NP_471775.1 CDS lin2445 NC_003212.1 2461598 2462143 R similar to NADH-dependent FMN reductase; hypothetical protein complement(2461598..2462143) Listeria innocua Clip11262 1131232 NP_471776.1 CDS lin2446 NC_003212.1 2462385 2463284 D similar to LysR family transcription regulator; hypothetical protein 2462385..2463284 Listeria innocua Clip11262 1131233 NP_471777.1 CDS lin2447 NC_003212.1 2463311 2465263 R similar to putative Na+/H+ antiporter; hypothetical protein complement(2463311..2465263) Listeria innocua Clip11262 1131234 NP_471778.1 CDS lin2448 NC_003212.1 2465393 2466991 R hypothetical protein complement(2465393..2466991) Listeria innocua Clip11262 1131235 NP_471779.1 CDS lin2449 NC_003212.1 2466995 2468236 R Similar to multidrug resistance protein; hypothetical protein complement(2466995..2468236) Listeria innocua Clip11262 1131236 NP_471780.1 CDS lin2450 NC_003212.1 2468436 2469047 R lin2450; hypothetical protein complement(2468436..2469047) Listeria innocua Clip11262 1131238 NP_471781.1 CDS lin2451 NC_003212.1 2469236 2469766 R hypothetical protein complement(2469236..2469766) Listeria innocua Clip11262 1131239 NP_471782.1 CDS lin2452 NC_003212.1 2469781 2470512 R similar to N-acetylglucosamine-6-phosphate isomerase; hypothetical protein complement(2469781..2470512) Listeria innocua Clip11262 1131240 NP_471783.1 CDS lin2453 NC_003212.1 2470556 2471401 R hypothetical protein complement(2470556..2471401) Listeria innocua Clip11262 1131241 NP_471784.1 CDS lin2454 NC_003212.1 2471523 2472830 R similar to 6-phospho-beta-glucosidase; hypothetical protein complement(2471523..2472830) Listeria innocua Clip11262 1131242 NP_471785.1 CDS lin2455 NC_003212.1 2472851 2474767 R similar to transcription antiterminator BglG family; hypothetical protein complement(2472851..2474767) Listeria innocua Clip11262 1131243 NP_471786.1 CDS lin2456 NC_003212.1 2474783 2475529 R hypothetical protein complement(2474783..2475529) Listeria innocua Clip11262 1131244 NP_471787.1 CDS lin2457 NC_003212.1 2475543 2475857 R similar to PTS system, cellobiose-specific enzyme IIA component; hypothetical protein complement(2475543..2475857) Listeria innocua Clip11262 1131245 NP_471788.1 CDS lin2458 NC_003212.1 2475857 2476213 R similar to PTS system, cellobiose-specific enzyme IIB component; hypothetical protein complement(2475857..2476213) Listeria innocua Clip11262 1131246 NP_471789.1 CDS lin2459 NC_003212.1 2476232 2477533 R similar to PTS system, cellobiose-specific enzyme IIC component; hypothetical protein complement(2476232..2477533) Listeria innocua Clip11262 1131248 NP_471790.1 CDS lin2460 NC_003212.1 2477688 2480471 R transmembrane protein complement(2477688..2480471) Listeria innocua Clip11262 1131249 NP_471791.1 CDS lin2461 NC_003212.1 2480505 2480975 R hypothetical protein complement(2480505..2480975) Listeria innocua Clip11262 1131250 NP_471792.1 CDS lin2462 NC_003212.1 2481366 2482889 D similar to amino acid antiporter (acid resistance); hypothetical protein 2481366..2482889 Listeria innocua Clip11262 1131251 NP_471793.1 CDS lin2463 NC_003212.1 2482902 2484296 D similar to glutamate decarboxylase; hypothetical protein 2482902..2484296 Listeria innocua Clip11262 1131252 NP_471794.1 CDS lin2464 NC_003212.1 2484305 2485819 R similar to S. pyogenes RofA regulatory protein; hypothetical protein complement(2484305..2485819) Listeria innocua Clip11262 1131253 NP_471795.1 CDS lin2465 NC_003212.1 2492894 2493652 R similar to transcription regulator DeoR family; hypothetical protein complement(2492894..2493652) Listeria innocua Clip11262 1131257 NP_471796.1 CDS pgi NC_003212.1 2493757 2495109 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(2493757..2495109) Listeria innocua Clip11262 1131258 NP_471797.1 CDS lin2467 NC_003212.1 2495212 2495619 R lin2467; hypothetical protein complement(2495212..2495619) Listeria innocua Clip11262 1131259 NP_471798.1 CDS lin2468 NC_003212.1 2495769 2496122 R similar to Bacillus subtilis general stress protein 13 containing a ribosomal S1 protein domain; induced by heat shock, salt stress, oxidative stress, glucose limitation and oxygen limitation; general stress protein 13 complement(2495769..2496122) Listeria innocua Clip11262 1131260 NP_471799.1 CDS lin2469 NC_003212.1 2496276 2497442 D similar to aminotransferase; hypothetical protein 2496276..2497442 Listeria innocua Clip11262 1131261 NP_471800.1 CDS lin2470 NC_003212.1 2497581 2498684 D similar to putative ABC-transporter transmembrane subunit; hypothetical protein 2497581..2498684 Listeria innocua Clip11262 1131262 NP_471801.1 CDS lin2471 NC_003212.1 2498684 2499364 D similar to ABC-transporter ATP binding proteins; hypothetical protein 2498684..2499364 Listeria innocua Clip11262 1131264 NP_471802.1 CDS lin2472 NC_003212.1 2499407 2499721 R similar to phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB component; hypothetical protein complement(2499407..2499721) Listeria innocua Clip11262 1131265 NP_471803.1 CDS lin2473 NC_003212.1 2499965 2501326 D similar to aspartate kinase; catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase 2499965..2501326 Listeria innocua Clip11262 1131266 NP_471804.1 CDS lin2474 NC_003212.1 2501371 2501775 R lin2474; hypothetical protein complement(2501371..2501775) Listeria innocua Clip11262 1131267 NP_471805.1 CDS lin2475 NC_003212.1 2501844 2502428 R similar to peptidyl-prolyl cis-trans isomerase; hypothetical protein complement(2501844..2502428) Listeria innocua Clip11262 1131268 NP_471806.1 CDS lin2476 NC_003212.1 2502660 2503871 D similar to multi-drug resistance efflux pump; hypothetical protein 2502660..2503871 Listeria innocua Clip11262 1131269 NP_471807.1 CDS lin2477 NC_003212.1 2504216 2506624 D similar to proteins involved in resistance to cholate and to NA(+) and in pH homeostasis; subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit A 2504216..2506624 Listeria innocua Clip11262 1131270 NP_471808.1 CDS lin2478 NC_003212.1 2506611 2507033 D similar to proteins involved in resistance to cholate and to NA(+) and in pH homeostasis; subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in the case of S. meliloti it was proved to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit B 2506611..2507033 Listeria innocua Clip11262 1131272 NP_471809.1 CDS lin2479 NC_003212.1 2507033 2507380 D similar to proteins involved in resistance to cholate and to NA(+) and in pH homeostasis; subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C 2507033..2507380 Listeria innocua Clip11262 1131274 NP_471810.1 CDS lin2480 NC_003212.1 2507373 2508857 D similar to proteins involved in resistance to cholate and to NA(+) and in pH homeostasis; subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 2507373..2508857 Listeria innocua Clip11262 1131276 NP_471811.1 CDS lin2481 NC_003212.1 2508864 2509343 D similar to proteins involved in resistance to cholate and to NA(+) and in pH homeostasis; subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit E 2508864..2509343 Listeria innocua Clip11262 1131278 NP_471812.1 CDS lin2482 NC_003212.1 2509340 2509627 D similar to proteins involved in resistance to cholate and to NA(+) and in pH homeostasis; subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit F 2509340..2509627 Listeria innocua Clip11262 1131280 NP_471813.1 CDS lin2483 NC_003212.1 2509611 2510204 D similar to proteins involved in resistance to cholate and to NA(+) and in pH homeostasis; subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit G 2509611..2510204 Listeria innocua Clip11262 1131282 NP_471814.1 CDS lin2484 NC_003212.1 2510249 2510620 R similar to Bacillus subtilis YuxO protein; hypothetical protein complement(2510249..2510620) Listeria innocua Clip11262 1131283 NP_471815.1 CDS lin2485 NC_003212.1 2510748 2511221 D similar to Bacillus subtilis YuiD protein; hypothetical protein 2510748..2511221 Listeria innocua Clip11262 1131285 NP_471816.1 CDS lin2486 NC_003212.1 2511255 2512073 R similar to Bacillus subtilis YwqG protein; hypothetical protein complement(2511255..2512073) Listeria innocua Clip11262 1131286 NP_471817.1 CDS lin2487 NC_003212.1 2512108 2512929 R hypothetical protein complement(2512108..2512929) Listeria innocua Clip11262 1131287 NP_471818.1 CDS lin2488 NC_003212.1 2513013 2514224 R similar to NADH dehydrogenase; hypothetical protein complement(2513013..2514224) Listeria innocua Clip11262 1131288 NP_471819.1 CDS lin2489 NC_003212.1 2514675 2515670 D similar to hypothetical thioredoxine reductase; hypothetical protein 2514675..2515670 Listeria innocua Clip11262 1131289 NP_471820.1 CDS lin2490 NC_003212.1 2515758 2516387 D conserved hypothetical protein similar to Bacillus subtilis YhfK protein; hypothetical protein 2515758..2516387 Listeria innocua Clip11262 1131290 NP_471821.1 CDS lin2491 NC_003212.1 2516433 2516666 R similar to Bacillus subtilis YuzB protein; hypothetical protein complement(2516433..2516666) Listeria innocua Clip11262 1131291 NP_471822.1 CDS lin2492 NC_003212.1 2516688 2517014 R similar to Bacillus subtilis YuzD protein; hypothetical protein complement(2516688..2517014) Listeria innocua Clip11262 1131292 NP_471823.1 CDS lin2493 NC_003212.1 2517255 2517452 R hypothetical protein complement(2517255..2517452) Listeria innocua Clip11262 1131293 NP_471824.1 CDS lin2494 NC_003212.1 2517344 2517718 D hypothetical protein 2517344..2517718 Listeria innocua Clip11262 1131295 NP_471825.1 CDS lin2495 NC_003212.1 2518065 2520887 D similar to internalin proteins, putative peptidoglycan bound protein (LPXTG motif); hypothetical protein 2518065..2520887 Listeria innocua Clip11262 1131297 NP_471826.1 CDS lin2496 NC_003212.1 2521061 2521297 D similar to NifU protein; hypothetical protein 2521061..2521297 Listeria innocua Clip11262 1131298 NP_471827.1 CDS ltrC NC_003212.1 2521412 2521912 D low temperature requirement C protein 2521412..2521912 Listeria innocua Clip11262 1131299 NP_471828.1 CDS lin2498 NC_003212.1 2521936 2523246 R hypothetical protein complement(2521936..2523246) Listeria innocua Clip11262 1131300 NP_471829.1 CDS lin2499 NC_003212.1 2523282 2523725 R similar to acetyltransferase; hypothetical protein complement(2523282..2523725) Listeria innocua Clip11262 1131301 NP_471830.1 CDS lin2500 NC_003212.1 2523775 2524542 R similar to conserved hypothetical protein and to Bacillus subtilis YutF protein; hypothetical protein complement(2523775..2524542) Listeria innocua Clip11262 1131302 NP_471831.1 CDS lin2501 NC_003212.1 2524562 2524837 R similar to Bacillus subtilis YutD protein; hypothetical protein complement(2524562..2524837) Listeria innocua Clip11262 1131303 NP_471832.1 CDS lin2502 NC_003212.1 2524834 2526225 R similar to Bacillus subtilis YunD protein; hypothetical protein complement(2524834..2526225) Listeria innocua Clip11262 1131304 NP_471833.1 CDS lin2503 NC_003212.1 2526358 2527197 D hypothetical protein 2526358..2527197 Listeria innocua Clip11262 1131306 NP_471834.1 CDS lin2504 NC_003212.1 2527198 2527563 D lin2504; hypothetical protein 2527198..2527563 Listeria innocua Clip11262 1131308 NP_471835.1 CDS lin2505 NC_003212.1 2527595 2528440 R similar to Bacillus subtilis YunF protein; hypothetical protein complement(2527595..2528440) Listeria innocua Clip11262 1131309 NP_471836.1 CDS lin2506 NC_003212.1 2528811 2530205 R hypothetical protein complement(2528811..2530205) Listeria innocua Clip11262 1131310 NP_471837.1 CDS lin2507 NC_003212.1 2530228 2530671 R hypothetical protein complement(2530228..2530671) Listeria innocua Clip11262 1131311 NP_471838.1 CDS lin2508 NC_003212.1 2530668 2531894 R similar to aminotransferase; hypothetical protein complement(2530668..2531894) Listeria innocua Clip11262 1131312 NP_471839.1 CDS lin2509 NC_003212.1 2531895 2533196 R similar to aminotransferase; hypothetical protein complement(2531895..2533196) Listeria innocua Clip11262 1131314 NP_471840.1 CDS lin2510 NC_003212.1 2533215 2534000 R similar to ABC transporter, ATP-binding protein; hypothetical protein complement(2533215..2534000) Listeria innocua Clip11262 1131315 NP_471841.1 CDS lin2511 NC_003212.1 2534340 2535416 D lin2511; hypothetical protein 2534340..2535416 Listeria innocua Clip11262 1131316 NP_471842.1 CDS lin2512 NC_003212.1 2535457 2536287 R conserved lipoprotein (putative ABC transporter binding protein); hypothetical protein complement(2535457..2536287) Listeria innocua Clip11262 1131317 NP_471843.1 CDS lin2513 NC_003212.1 2536353 2537027 R similar to ABC transporter, permease protein; hypothetical protein complement(2536353..2537027) Listeria innocua Clip11262 1131318 NP_471844.1 CDS lin2514 NC_003212.1 2537024 2538046 R similar to ABC transporter (ATP-binding protein); hypothetical protein complement(2537024..2538046) Listeria innocua Clip11262 1131319 NP_471845.1 CDS lin2515 NC_003212.1 2538630 2539772 R similar to two-component sensor histidine kinase; hypothetical protein complement(2538630..2539772) Listeria innocua Clip11262 1131321 NP_471846.1 CDS lin2516 NC_003212.1 2539762 2540457 R similar to two-component response regulator; hypothetical protein complement(2539762..2540457) Listeria innocua Clip11262 1131322 NP_471847.1 CDS lin2517 NC_003212.1 2540533 2541408 R hypothetical protein complement(2540533..2541408) Listeria innocua Clip11262 1131324 NP_471848.1 CDS lin2518 NC_003212.1 2541601 2541909 R similar to thioredoxin; hypothetical protein complement(2541601..2541909) Listeria innocua Clip11262 1131325 NP_471849.1 CDS lin2519 NC_003212.1 2541970 2542347 R similar to glycine cleavage system protein H; part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(2541970..2542347) Listeria innocua Clip11262 1131326 NP_471850.1 CDS lin2520 NC_003212.1 2542387 2542740 R hypothetical protein complement(2542387..2542740) Listeria innocua Clip11262 1131327 NP_471851.1 CDS lin2521 NC_003212.1 2542895 2544070 R similar to cell division proteins RodA, FtsW; hypothetical protein complement(2542895..2544070) Listeria innocua Clip11262 1131328 NP_471852.1 CDS lin2522 NC_003212.1 2544141 2545310 R similar to cell division proteins RodA, FtsW; hypothetical protein complement(2544141..2545310) Listeria innocua Clip11262 1131329 NP_471853.1 CDS lin2523 NC_003212.1 2545451 2546242 R similar to Bacillus subtilis ferrichrome ABC transporter (ATP-binding protein) FhuC; hypothetical protein complement(2545451..2546242) Listeria innocua Clip11262 1131330 NP_471854.1 CDS lin2524 NC_003212.1 2546239 2547249 R similar to Bacillus subtilis ferrichrome ABC transporter (permease) FhuG; hypothetical protein complement(2546239..2547249) Listeria innocua Clip11262 1131331 NP_471855.1 CDS lin2525 NC_003212.1 2547249 2548220 R similar to Bacillus subtilis ferrichrome ABC transporter fhuD precursor (ferrichrome-binding protein); hypothetical protein complement(2547249..2548220) Listeria innocua Clip11262 1131333 NP_471856.1 CDS lin2526 NC_003212.1 2548376 2548540 D lin2526; hypothetical protein 2548376..2548540 Listeria innocua Clip11262 1131335 NP_471857.1 CDS lin2527 NC_003212.1 2548673 2549431 D similar to acetylesterase; hypothetical protein 2548673..2549431 Listeria innocua Clip11262 1131336 NP_471858.1 CDS lin2528 NC_003212.1 2549470 2550873 R highly similar to glutamate decarboxylases; hypothetical protein complement(2549470..2550873) Listeria innocua Clip11262 1131338 NP_471859.1 CDS lin2529 NC_003212.1 2550999 2551307 D similar to Bacillus subtilis YfhL protein; hypothetical protein 2550999..2551307 Listeria innocua Clip11262 1131339 NP_471860.1 CDS lin2530 NC_003212.1 2551367 2552224 R similar to transcription antiterminator; hypothetical protein complement(2551367..2552224) Listeria innocua Clip11262 1131342 NP_471861.1 CDS lin2531 NC_003212.1 2552493 2552903 D lin2531; hypothetical protein 2552493..2552903 Listeria innocua Clip11262 1131343 NP_471862.1 CDS lin2532 NC_003212.1 2552922 2553434 R lin2532; hypothetical protein complement(2552922..2553434) Listeria innocua Clip11262 1131344 NP_471863.1 CDS lin2533 NC_003212.1 2553557 2553898 D lin2533; hypothetical protein 2553557..2553898 Listeria innocua Clip11262 1131345 NP_471864.1 CDS lin2534 NC_003212.1 2553931 2554314 R lin2534; hypothetical protein complement(2553931..2554314) Listeria innocua Clip11262 1131346 NP_471865.1 CDS lin2535 NC_003212.1 2554369 2555265 R similar to transcription regulator; hypothetical protein complement(2554369..2555265) Listeria innocua Clip11262 1131347 NP_471866.1 CDS lin2536 NC_003212.1 2555306 2555875 R lin2536; hypothetical protein complement(2555306..2555875) Listeria innocua Clip11262 1131348 NP_471867.1 CDS lin2537 NC_003212.1 2556522 2557574 R similar to internalin proteins; hypothetical protein complement(2556522..2557574) Listeria innocua Clip11262 1131349 NP_471868.1 CDS lin2538 NC_003212.1 2557627 2561559 R similar to glycosidase; hypothetical protein complement(2557627..2561559) Listeria innocua Clip11262 1131350 NP_471869.1 CDS lin2539 NC_003212.1 2561574 2562518 R similar to internalin; hypothetical protein complement(2561574..2562518) Listeria innocua Clip11262 1131351 NP_471870.1 CDS lin2540 NC_003212.1 2562577 2565849 R similar to glycosidase; hypothetical protein complement(2562577..2565849) Listeria innocua Clip11262 1131352 NP_471871.1 CDS lin2541 NC_003212.1 2566232 2567140 D similar to transcription regulator; hypothetical protein 2566232..2567140 Listeria innocua Clip11262 1131353 NP_471872.1 CDS smpB NC_003212.1 2567195 2567659 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(2567195..2567659) Listeria innocua Clip11262 1131354 NP_471873.1 CDS lin2543 NC_003212.1 2567675 2570056 R similar to exoribonuclease RNase-R; hypothetical protein complement(2567675..2570056) Listeria innocua Clip11262 1131355 NP_471874.1 CDS lin2544 NC_003212.1 2570090 2570836 R similar to carboxylesterase; hypothetical protein complement(2570090..2570836) Listeria innocua Clip11262 1131356 NP_471875.1 CDS secG NC_003212.1 2571095 2571328 R similar to preprotein translocase subunit SecG; preprotein translocase subunit SecG complement(2571095..2571328) Listeria innocua Clip11262 1131357 NP_471876.1 CDS lin2546 NC_003212.1 2571418 2572161 R similar to carboxylesterase; hypothetical protein complement(2571418..2572161) Listeria innocua Clip11262 1131358 NP_471877.1 CDS lin2547 NC_003212.1 2572344 2573063 R similar to lipolytic enzyme; hypothetical protein complement(2572344..2573063) Listeria innocua Clip11262 1131359 NP_471878.1 CDS lin2548 NC_003212.1 2573195 2573368 R lin2548; hypothetical protein complement(2573195..2573368) Listeria innocua Clip11262 1131360 NP_471879.1 CDS eno NC_003212.1 2573471 2574763 R highly similar to enolase; enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(2573471..2574763) Listeria innocua Clip11262 1131361 NP_471880.1 CDS lin2550 NC_003212.1 2574898 2576430 R highly similar to phosphoglycerate mutase; catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(2574898..2576430) Listeria innocua Clip11262 1131362 NP_471881.1 CDS tpiA NC_003212.1 2576432 2577187 R highly similar to triose phosphate isomerase; Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(2576432..2577187) Listeria innocua Clip11262 1131363 NP_471882.1 CDS pgk NC_003212.1 2577233 2578423 R highly similar to phosphoglycerate kinase; Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(2577233..2578423) Listeria innocua Clip11262 1131365 NP_471883.1 CDS lin2553 NC_003212.1 2578558 2579568 R highly similar to glyceraldehyde 3-phosphate dehydrogenase; catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase complement(2578558..2579568) Listeria innocua Clip11262 1131366 NP_471884.1 CDS lin2554 NC_003212.1 2579601 2580647 R similar to Bacillus subtilis CggR hypothetical transcriptional regulator; hypothetical protein complement(2579601..2580647) Listeria innocua Clip11262 1131367 NP_471885.1 CDS sigL NC_003212.1 2581090 2582433 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 complement(2581090..2582433) Listeria innocua Clip11262 1131368 NP_471886.1 CDS lin2556 NC_003212.1 2582584 2583510 R similar to dipeptidases; hypothetical protein complement(2582584..2583510) Listeria innocua Clip11262 1131369 NP_471887.1 CDS lin2557 NC_003212.1 2583589 2585823 R similar to transport protein; hypothetical protein complement(2583589..2585823) Listeria innocua Clip11262 1131370 NP_471888.1 CDS lin2558 NC_003212.1 2585830 2586438 R similar to transcription regulator; hypothetical protein complement(2585830..2586438) Listeria innocua Clip11262 1131371 NP_471889.1 CDS lin2559 NC_003212.1 2586455 2586853 R lin2559; hypothetical protein complement(2586455..2586853) Listeria innocua Clip11262 1131373 NP_471890.1 CDS lin2560 NC_003212.1 2587044 2587379 D lin2560; hypothetical protein 2587044..2587379 Listeria innocua Clip11262 1131374 NP_471891.1 CDS lin2561 NC_003212.1 2587880 2588086 D hypothetical protein 2587880..2588086 Listeria innocua Clip11262 1131375 NP_471892.1 CDS lin2562 NC_003212.1 2588161 2589057 R hypothetical protein complement(2588161..2589057) Listeria innocua Clip11262 1131376 NP_471893.1 CDS lin2563 NC_003212.1 2589420 2590370 R similar to N-acetylmuramoyl-L-alanine amidase (N-terminal part) and to L-alanoyl-D-glutamate peptidase (C-terminal part); hypothetical protein complement(2589420..2590370) Listeria innocua Clip11262 1131377 NP_471894.1 CDS lin2564 NC_003212.1 2591144 2591485 R lin2564; hypothetical protein complement(2591144..2591485) Listeria innocua Clip11262 1131378 NP_471895.1 CDS lin2565 NC_003212.1 2591482 2592603 R similar to protein gp20 [Bacteriophage A118]; hypothetical protein complement(2591482..2592603) Listeria innocua Clip11262 1131379 NP_471896.1 CDS lin2566 NC_003212.1 2592600 2594741 R similar to endopeptidase [bacteriophage bIL285]; hypothetical protein complement(2592600..2594741) Listeria innocua Clip11262 1131381 NP_471897.1 CDS lin2567 NC_003212.1 2594723 2595463 R similar to Orf53 [bacteriophage bIL285]; hypothetical protein complement(2594723..2595463) Listeria innocua Clip11262 1131383 NP_471898.1 CDS lin2568 NC_003212.1 2595460 2598741 R similar to tail protein [bacteriophage bIL285]; hypothetical protein complement(2595460..2598741) Listeria innocua Clip11262 1131385 NP_471899.1 CDS lin2569 NC_003212.1 2598756 2598890 R similar to Lactococcus lactis prophage pi2 protein 41; hypothetical protein complement(2598756..2598890) Listeria innocua Clip11262 1131386 NP_471900.1 CDS lin2570 NC_003212.1 2598965 2599321 R similar to Orf51 [bacteriophage bIL285]; hypothetical protein complement(2598965..2599321) Listeria innocua Clip11262 1131387 NP_471901.1 CDS lin2571 NC_003212.1 2599365 2599943 R similar to Orf50 [bacteriophage bIL285]; hypothetical protein complement(2599365..2599943) Listeria innocua Clip11262 1131388 NP_471902.1 CDS lin2572 NC_003212.1 2599944 2600267 R similar to Orf49 [bacteriophage bIL285]; hypothetical protein complement(2599944..2600267) Listeria innocua Clip11262 1131389 NP_471903.1 CDS lin2573 NC_003212.1 2600264 2600617 R similar to Orf48 [bacteriophage bIL285]; hypothetical protein complement(2600264..2600617) Listeria innocua Clip11262 1131391 NP_471904.1 CDS lin2574 NC_003212.1 2600624 2600929 R similar to Orf47 [bacteriophage bIL285]; hypothetical protein complement(2600624..2600929) Listeria innocua Clip11262 1131393 NP_471905.1 CDS lin2575 NC_003212.1 2600916 2601203 R similar to Orf46 [bacteriophage bIL285]; hypothetical protein complement(2600916..2601203) Listeria innocua Clip11262 1131395 NP_471906.1 CDS lin2576 NC_003212.1 2601387 2602574 R similar to capsid protein [bacteriophage bIL285]; hypothetical protein complement(2601387..2602574) Listeria innocua Clip11262 1131397 NP_471907.1 CDS lin2577 NC_003212.1 2602565 2603149 R similar to protease [bacteriophage bIL285]; hypothetical protein complement(2602565..2603149) Listeria innocua Clip11262 1131398 NP_471908.1 CDS lin2578 NC_003212.1 2603146 2604327 R similar to portal protein [bacteriophage bIL285]; hypothetical protein complement(2603146..2604327) Listeria innocua Clip11262 1131400 NP_471909.1 CDS lin2579 NC_003212.1 2604341 2606092 R similar to terminase [bacteriophage bIL285]; hypothetical protein complement(2604341..2606092) Listeria innocua Clip11262 1131402 NP_471910.1 CDS lin2580 NC_003212.1 2606089 2606463 R similar to bacteriophage protein; hypothetical protein complement(2606089..2606463) Listeria innocua Clip11262 1131403 NP_471911.1 CDS lin2581 NC_003212.1 2606504 2606878 R similar to bacteriophage protein; hypothetical protein complement(2606504..2606878) Listeria innocua Clip11262 1131404 NP_471912.1 CDS lin2582 NC_003212.1 2607196 2607939 R lin2582; hypothetical protein complement(2607196..2607939) Listeria innocua Clip11262 1131405 NP_471913.1 CDS lin2583 NC_003212.1 2608037 2608462 R lin2583; hypothetical protein complement(2608037..2608462) Listeria innocua Clip11262 1131406 NP_471914.1 CDS lin2584 NC_003212.1 2608475 2608702 R lin2584; hypothetical protein complement(2608475..2608702) Listeria innocua Clip11262 1131407 NP_471915.1 CDS lin2585 NC_003212.1 2608919 2609563 R lin2585; hypothetical protein complement(2608919..2609563) Listeria innocua Clip11262 1131408 NP_471916.1 CDS lin2586 NC_003212.1 2609566 2609880 R similar to bacteriophage protein; hypothetical protein complement(2609566..2609880) Listeria innocua Clip11262 1131409 NP_471917.1 CDS lin2587 NC_003212.1 2610169 2612442 R similar to bacteriophage protein; hypothetical protein complement(2610169..2612442) Listeria innocua Clip11262 1131411 NP_471918.1 CDS lin2588 NC_003212.1 2612465 2612947 R similar to bacteriophage protein; hypothetical protein complement(2612465..2612947) Listeria innocua Clip11262 1131412 NP_471919.1 CDS lin2589 NC_003212.1 2612970 2614226 R similar to DEAH-family helicase; hypothetical protein complement(2612970..2614226) Listeria innocua Clip11262 1131413 NP_471920.1 CDS lin2590 NC_003212.1 2614290 2614979 R similar to bacteriophage protein; hypothetical protein complement(2614290..2614979) Listeria innocua Clip11262 1131414 NP_471921.1 CDS lin2591 NC_003212.1 2614992 2615471 R similar to bacteriophage protein; hypothetical protein complement(2614992..2615471) Listeria innocua Clip11262 1131415 NP_471922.1 CDS lin2592 NC_003212.1 2615853 2616026 R lin2592; hypothetical protein complement(2615853..2616026) Listeria innocua Clip11262 1131416 NP_471923.1 CDS lin2593 NC_003212.1 2616023 2616361 R hypothetical protein complement(2616023..2616361) Listeria innocua Clip11262 1131417 NP_471924.1 CDS lin2594 NC_003212.1 2616494 2616715 R lin2594; hypothetical protein complement(2616494..2616715) Listeria innocua Clip11262 1131419 NP_471925.1 CDS lin2595 NC_003212.1 2616715 2616900 R lin2595; hypothetical protein complement(2616715..2616900) Listeria innocua Clip11262 1131420 NP_471926.1 CDS lin2596 NC_003212.1 2617103 2617618 R lin2596; hypothetical protein complement(2617103..2617618) Listeria innocua Clip11262 1131422 NP_471927.1 CDS lin2597 NC_003212.1 2617817 2618110 R lin2597; hypothetical protein complement(2617817..2618110) Listeria innocua Clip11262 1131423 NP_471928.1 CDS lin2598 NC_003212.1 2618107 2618295 R lin2598; hypothetical protein complement(2618107..2618295) Listeria innocua Clip11262 1131424 NP_471929.1 CDS lin2599 NC_003212.1 2618288 2618686 R lin2599; hypothetical protein complement(2618288..2618686) Listeria innocua Clip11262 1131426 NP_471930.1 CDS lin2600 NC_003212.1 2618683 2619363 R lin2600; hypothetical protein complement(2618683..2619363) Listeria innocua Clip11262 1131428 NP_471931.1 CDS lin2601 NC_003212.1 2619376 2620320 R similar to bacteriophage integrase; hypothetical protein complement(2619376..2620320) Listeria innocua Clip11262 1131430 NP_471932.1 CDS lin2602 NC_003212.1 2620331 2621044 R similar to phage protein; hypothetical protein complement(2620331..2621044) Listeria innocua Clip11262 1131431 NP_471933.1 CDS lin2603 NC_003212.1 2621065 2621352 R lin2603; hypothetical protein complement(2621065..2621352) Listeria innocua Clip11262 1131432 NP_471934.1 CDS lin2604 NC_003212.1 2622064 2622306 R lin2604; hypothetical protein complement(2622064..2622306) Listeria innocua Clip11262 1131433 NP_471935.1 CDS lin2605 NC_003212.1 2622328 2622519 R lin2605; hypothetical protein complement(2622328..2622519) Listeria innocua Clip11262 1131434 NP_471936.1 CDS lin2606 NC_003212.1 2622586 2622789 D lin2606; hypothetical protein 2622586..2622789 Listeria innocua Clip11262 1131435 NP_471937.1 CDS lin2607 NC_003212.1 2623190 2623513 D similar to a putative repressor protein [Bacteriophage A118]; hypothetical protein 2623190..2623513 Listeria innocua Clip11262 1131436 NP_471938.1 CDS lin2608 NC_003212.1 2623530 2623982 D similar to protein gp35 from Bacteriophage A118; hypothetical protein 2623530..2623982 Listeria innocua Clip11262 1131437 NP_471939.1 CDS lin2609 NC_003212.1 2624033 2624521 D lin2609; hypothetical protein 2624033..2624521 Listeria innocua Clip11262 1131438 NP_471940.1 CDS lin2610 NC_003212.1 2624653 2625807 D similar to integrases; hypothetical protein 2624653..2625807 Listeria innocua Clip11262 1131439 NP_471941.1 CDS lin2611 NC_003212.1 2626101 2627537 R similar to chitinase and chitin binding protein; hypothetical protein complement(2626101..2627537) Listeria innocua Clip11262 1131440 NP_471942.1 CDS clpP NC_003212.1 2627695 2628291 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 2627695..2628291 Listeria innocua Clip11262 1131441 NP_471943.1 CDS lin2613 NC_003212.1 2628342 2629733 R similar to amino acid transporter; hypothetical protein complement(2628342..2629733) Listeria innocua Clip11262 1131442 NP_471944.1 CDS lin2614 NC_003212.1 2629973 2630989 R similar to NADH oxidase; catalyzes the reduction of alpha, beta-unsaturated aldehydes and ketones; reduces the nitro group nitroester and nitroaromatic compounds; NADPH dehydrogenase NamA complement(2629973..2630989) Listeria innocua Clip11262 1131443 NP_471945.1 CDS lin2615 NC_003212.1 2631015 2631986 R hypothetical protein complement(2631015..2631986) Listeria innocua Clip11262 1131444 NP_471946.1 CDS lin2616 NC_003212.1 2631994 2632962 R hypothetical protein complement(2631994..2632962) Listeria innocua Clip11262 1131445 NP_471947.1 CDS lin2617 NC_003212.1 2632964 2633839 R hypothetical protein complement(2632964..2633839) Listeria innocua Clip11262 1131447 NP_471948.1 CDS lin2618 NC_003212.1 2633948 2635678 R similar to phosphomannomutase and phosphoglucomutase; hypothetical protein complement(2633948..2635678) Listeria innocua Clip11262 1131449 NP_471949.1 CDS lin2619 NC_003212.1 2635723 2636784 R similar to aldose 1-epimerase (mutarotase); hypothetical protein complement(2635723..2636784) Listeria innocua Clip11262 1131450 NP_471950.1 CDS galE NC_003212.1 2636800 2637786 R UDP-glucose 4-epimerase complement(2636800..2637786) Listeria innocua Clip11262 1131451 NP_471951.1 CDS trxB NC_003212.1 2637899 2638858 R thioredoxin reductase complement(2637899..2638858) Listeria innocua Clip11262 1131452 NP_471952.1 CDS lin2622 NC_003212.1 2638936 2640411 R lin2622; hypothetical protein complement(2638936..2640411) Listeria innocua Clip11262 1131453 NP_471953.1 CDS lin2623 NC_003212.1 2640496 2640993 R similar to acetyltransferase; hypothetical protein complement(2640496..2640993) Listeria innocua Clip11262 1131454 NP_471954.1 CDS lin2624 NC_003212.1 2640997 2641650 R similar to Bacillus subtilis P-Ser-HPr phosphatase; hydrolyzes pyrophosphate formed during serine-46-phosphorylated HPr dephosphorylation; pyrophosphatase PpaX complement(2640997..2641650) Listeria innocua Clip11262 1131455 NP_471955.1 CDS lin2625 NC_003212.1 2641693 2642526 R highly similar to prolipoprotein diacylglyceryl transferase; transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(2641693..2642526) Listeria innocua Clip11262 1131457 NP_471956.1 CDS lin2626 NC_003212.1 2642618 2643556 R catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase complement(2642618..2643556) Listeria innocua Clip11262 1131458 NP_471957.1 CDS lin2627 NC_003212.1 2643743 2644096 R similar to Bacillus subtilis YvlD protein; hypothetical protein complement(2643743..2644096) Listeria innocua Clip11262 1131459 NP_471958.1 CDS lin2628 NC_003212.1 2644105 2644305 R similar to Bacillus subtilis yvlC protein; hypothetical protein complement(2644105..2644305) Listeria innocua Clip11262 1131460 NP_471959.1 CDS lin2629 NC_003212.1 2644329 2645540 R lin2629; hypothetical protein complement(2644329..2645540) Listeria innocua Clip11262 1131462 NP_471960.1 CDS lin2630 NC_003212.1 2645608 2646858 R similar to Bacillus subtilis YvlB protein; hypothetical protein complement(2645608..2646858) Listeria innocua Clip11262 1131463 NP_471961.1 CDS uvrA NC_003212.1 2647067 2649937 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(2647067..2649937) Listeria innocua Clip11262 1131464 NP_471962.1 CDS uvrB NC_003212.1 2649945 2651921 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(2649945..2651921) Listeria innocua Clip11262 1131465 NP_471963.1 CDS lin2633 NC_003212.1 2652169 2652408 R similar to Bacillus subtilis CsbA protein; hypothetical protein complement(2652169..2652408) Listeria innocua Clip11262 1131467 NP_471964.1 CDS lin2634 NC_003212.1 2652430 2653077 R lin2634; hypothetical protein complement(2652430..2653077) Listeria innocua Clip11262 1131468 NP_471965.1 CDS lin2635 NC_003212.1 2653099 2653485 R lin2635; hypothetical protein complement(2653099..2653485) Listeria innocua Clip11262 1131469 NP_471966.1 CDS lin2636 NC_003212.1 2653592 2653897 R similar to transcription regulator ArsR family; hypothetical protein complement(2653592..2653897) Listeria innocua Clip11262 1131470 NP_471967.1 CDS lin2637 NC_003212.1 2654168 2654827 R similar to negative regulator of phosphate regulon; hypothetical protein complement(2654168..2654827) Listeria innocua Clip11262 1131471 NP_471968.1 CDS lin2638 NC_003212.1 2654840 2655619 R similar to phosphate ABC transporter (ATP-binding protein); ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(2654840..2655619) Listeria innocua Clip11262 1131472 NP_471969.1 CDS lin2639 NC_003212.1 2655634 2656449 R similar to phosphate ABC transporter (ATP-binding protein); ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(2655634..2656449) Listeria innocua Clip11262 1131473 NP_471970.1 CDS lin2640 NC_003212.1 2656477 2657361 R similar to phosphate ABC transporter (permease protein); hypothetical protein complement(2656477..2657361) Listeria innocua Clip11262 1131474 NP_471971.1 CDS lin2641 NC_003212.1 2657358 2658281 R similar to phosphate ABC transporter (permease protein); hypothetical protein complement(2657358..2658281) Listeria innocua Clip11262 1131475 NP_471972.1 CDS lin2642 NC_003212.1 2658375 2659283 R similar to phosphate ABC transporter (binding protein); hypothetical protein complement(2658375..2659283) Listeria innocua Clip11262 1131477 NP_471973.1 CDS phoR NC_003212.1 2659539 2661314 R two-component sensor histidine kinase complement(2659539..2661314) Listeria innocua Clip11262 1131478 NP_471974.1 CDS phoP NC_003212.1 2661314 2662024 R two-component response phosphate regulator complement(2661314..2662024) Listeria innocua Clip11262 1131479 NP_471975.1 CDS lin2645 NC_003212.1 2662165 2663340 R lin2645; hypothetical protein complement(2662165..2663340) Listeria innocua Clip11262 1131481 NP_471976.1 CDS lin2646 NC_003212.1 2663371 2664819 R similar to cardiolipin synthase; hypothetical protein complement(2663371..2664819) Listeria innocua Clip11262 1131482 NP_471977.1 CDS lin2647 NC_003212.1 2664941 2666254 R similar to cell wall binding proteins; hypothetical protein complement(2664941..2666254) Listeria innocua Clip11262 1131483 NP_471978.1 CDS spl NC_003212.1 2666375 2667571 R peptidoglycan lytic protein P45 complement(2666375..2667571) Listeria innocua Clip11262 1131484 NP_471979.1 CDS lin2649 NC_003212.1 2667647 2668531 R highly similar to cell-division protein FtsX; hypothetical protein complement(2667647..2668531) Listeria innocua Clip11262 1131485 NP_471980.1 CDS lin2650 NC_003212.1 2668521 2669207 R highly similar to the cell-division ATP-binding protein FtsE; hypothetical protein complement(2668521..2669207) Listeria innocua Clip11262 1131486 NP_471981.1 CDS lin2652 NC_003212.1 2669712 2670575 R hypothetical protein complement(2669712..2670575) Listeria innocua Clip11262 1131487 NP_471982.1 CDS prfB NC_003212.1 2670581 2671564 R highly similar to peptide chain release factor 2; recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 complement(2670581..2671564) Listeria innocua Clip11262 1131488 NP_471983.1 CDS secA NC_003212.1 2671767 2674280 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(2671767..2674280) Listeria innocua Clip11262 1131490 NP_471984.1 CDS lin2655 NC_003212.1 2674510 2675073 R similar to conserved hypothetical proteins like to Bacillus subtilis YvyD protein; hypothetical protein complement(2674510..2675073) Listeria innocua Clip11262 1131491 NP_471985.1 CDS lin2656 NC_003212.1 2675266 2675922 R similar to late competence protein comFC; hypothetical protein complement(2675266..2675922) Listeria innocua Clip11262 1131492 NP_471986.1 CDS lin2657 NC_003212.1 2675915 2677234 R similar to late competence protein comFA; hypothetical protein complement(2675915..2677234) Listeria innocua Clip11262 1131493 NP_471987.1 CDS lin2658 NC_003212.1 2677431 2678282 R similar to Bacillus subtilis YviA (DegV) protein; hypothetical protein complement(2677431..2678282) Listeria innocua Clip11262 1131495 NP_471988.1 CDS lin2659 NC_003212.1 2678303 2678989 R similar to Bacillus subtilis two-component response regulator DegU; hypothetical protein complement(2678303..2678989) Listeria innocua Clip11262 1131496 NP_471989.1 CDS lin2660 NC_003212.1 2679373 2680008 D hypothetical protein 2679373..2680008 Listeria innocua Clip11262 1131497 NP_471990.1 CDS lin2661 NC_003212.1 2680010 2680555 D lin2661; hypothetical protein 2680010..2680555 Listeria innocua Clip11262 1131499 NP_471991.1 CDS lin2662 NC_003212.1 2680730 2681779 D similar to Bacillus subtilis putative transcriptional regulator LytR; hypothetical protein 2680730..2681779 Listeria innocua Clip11262 1131500 NP_471992.1 CDS lin2663 NC_003212.1 2681817 2682869 R similar to Bacillus subtilis TagO teichoic acid linkage unit synthesis protein; hypothetical protein complement(2681817..2682869) Listeria innocua Clip11262 1131501 NP_471993.1 CDS lin2664 NC_003212.1 2682877 2684001 R similar to Bacillus subtilis O-succinylbenzoate-CoA synthase (MenC); hypothetical protein complement(2682877..2684001) Listeria innocua Clip11262 1131502 NP_471994.1 CDS lin2665 NC_003212.1 2684003 2684737 R similar to Bacillus subtilis TagA protein involved in polyglycerol phosphate biosynthesis; hypothetical protein complement(2684003..2684737) Listeria innocua Clip11262 1131504 NP_471995.1 CDS lin2666 NC_003212.1 2684860 2685690 R similar to hypothetical cell wall binding protein from Bacillus subtilis; hypothetical protein complement(2684860..2685690) Listeria innocua Clip11262 1131506 NP_471996.1 CDS lin2667 NC_003212.1 2686080 2686445 R similar to single-strand DNA-binding protein; hypothetical protein complement(2686080..2686445) Listeria innocua Clip11262 1131507 NP_471997.1 CDS fabZ NC_003212.1 2686700 2687134 R similar to hydroxymyristoyl-(acyl carrier protein) dehydratase; in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(2686700..2687134) Listeria innocua Clip11262 1131508 NP_471998.1 CDS lin2669 NC_003212.1 2687156 2688151 R similar to MreB-like protein; rod shape-determining protein MreB complement(2687156..2688151) Listeria innocua Clip11262 1131509 NP_471999.1 CDS murA NC_003212.1 2688314 2689606 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(2688314..2689606) Listeria innocua Clip11262 1131510 NP_472000.1 CDS lin2671 NC_003212.1 2689773 2690009 R similar to Bacillus subtilis YwzB protein; hypothetical protein complement(2689773..2690009) Listeria innocua Clip11262 1131511 NP_472001.1 CDS atpC NC_003212.1 2690132 2690536 R highly similar to H+-transporting ATP synthase chain epsilon; part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(2690132..2690536) Listeria innocua Clip11262 1131512 NP_472002.1 CDS lin2673 NC_003212.1 2690558 2691979 R highly similar to H+-transporting ATP synthase chain beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(2690558..2691979) Listeria innocua Clip11262 1131513 NP_472003.1 CDS lin2674 NC_003212.1 2692040 2692912 R highly similar to H+-transporting ATP synthase chain gamma; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(2692040..2692912) Listeria innocua Clip11262 1131514 NP_472004.1 CDS lin2675 NC_003212.1 2692950 2694464 R highly similar to H+-transporting ATP synthase chain alpha; produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(2692950..2694464) Listeria innocua Clip11262 1131515 NP_472005.1 CDS lin2676 NC_003212.1 2694491 2695030 R highly similar to H+-transporting ATP synthase chain delta; Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(2694491..2695030) Listeria innocua Clip11262 1131516 NP_472006.1 CDS lin2677 NC_003212.1 2695027 2695539 R highly similar to H+-transporting ATP synthase chain b; Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel; F0F1 ATP synthase subunit B complement(2695027..2695539) Listeria innocua Clip11262 1131517 NP_472007.1 CDS lin2678 NC_003212.1 2695627 2695845 R highly similar to H+-transporting ATP synthase chain c; Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(2695627..2695845) Listeria innocua Clip11262 1131519 NP_472008.1 CDS lin2679 NC_003212.1 2695917 2696633 R highly similar to H+-transporting ATP synthase chain a; Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(2695917..2696633) Listeria innocua Clip11262 1131520 NP_472009.1 CDS lin2680 NC_003212.1 2696640 2697038 R highly similar to ATP synthase subunit i; hypothetical protein complement(2696640..2697038) Listeria innocua Clip11262 1131521 NP_472010.1 CDS lin2681 NC_003212.1 2697870 2699009 R similar to UDP-N-acetylglucosamine 2-epimerase; hypothetical protein complement(2697870..2699009) Listeria innocua Clip11262 1131523 NP_472011.1 CDS upp NC_003212.1 2699127 2699756 R highly similar to uracil phosphoribosyltransferase; Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(2699127..2699756) Listeria innocua Clip11262 1131524 NP_472012.1 CDS glyA NC_003212.1 2699894 2701135 R highly similar to glycine hydroxymethyltransferase; catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(2699894..2701135) Listeria innocua Clip11262 1131525 NP_472013.1 CDS lin2684 NC_003212.1 2701271 2701678 R similar to phosphatases; hypothetical protein complement(2701271..2701678) Listeria innocua Clip11262 1131526 NP_472014.1 CDS lin2685 NC_003212.1 2701675 2702712 R similar to yeast translation initiation protein; hypothetical protein complement(2701675..2702712) Listeria innocua Clip11262 1131527 NP_472015.1 CDS lin2686 NC_003212.1 2703012 2703863 R similar to protoporphyrinogen oxidase; hypothetical protein complement(2703012..2703863) Listeria innocua Clip11262 1131529 NP_472016.1 CDS prfA NC_003212.1 2703850 2704926 R highly similar to peptide chain release factor 1; recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(2703850..2704926) Listeria innocua Clip11262 1131530 NP_472017.1 CDS lin2688 NC_003212.1 2704949 2705524 R similar to thymidine kinase; catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(2704949..2705524) Listeria innocua Clip11262 1131532 NP_472018.1 CDS lin2689 NC_003212.1 2705646 2706512 R highly similar to homoserine kinase; catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase complement(2705646..2706512) Listeria innocua Clip11262 1131533 NP_472019.1 CDS lin2690 NC_003212.1 2706512 2707567 R highly similar to threonine synthase; catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(2706512..2707567) Listeria innocua Clip11262 1131534 NP_472020.1 CDS lin2691 NC_003212.1 2707570 2708856 R highly similar to homoserine dehydrogenase; catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase complement(2707570..2708856) Listeria innocua Clip11262 1131536 NP_472021.1 CDS rpmE2 NC_003212.1 2709078 2709323 R RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 type B complement(2709078..2709323) Listeria innocua Clip11262 1131538 NP_472022.1 CDS lin2693 NC_003212.1 2709463 2710956 R lin2693; hypothetical protein complement(2709463..2710956) Listeria innocua Clip11262 1131539 NP_472023.1 CDS gtcA NC_003212.1 2710971 2711408 R wall teichoic acid glycosylation protein GtcA complement(2710971..2711408) Listeria innocua Clip11262 1131540 NP_472024.1 CDS lin2695 NC_003212.1 2711405 2712352 R similar to glycosyl transferases; hypothetical protein complement(2711405..2712352) Listeria innocua Clip11262 1131541 NP_472025.1 CDS rho NC_003212.1 2712433 2713704 R highly similar to transcription terminator factor rho; An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(2712433..2713704) Listeria innocua Clip11262 1131542 NP_472026.1 CDS lin2697 NC_003212.1 2713819 2715090 R highly similar to UDP-N-acetylglucosamine 1-carboxyvinyltransferase; adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(2713819..2715090) Listeria innocua Clip11262 1131543 NP_472027.1 CDS lin2698 NC_003212.1 2715208 2716281 R hypothetical protein complement(2715208..2716281) Listeria innocua Clip11262 1131544 NP_472028.1 CDS lin2699 NC_003212.1 2716286 2717311 R similar to galactosyltransferase; hypothetical protein complement(2716286..2717311) Listeria innocua Clip11262 1131545 NP_472029.1 CDS lin2700 NC_003212.1 2717304 2718587 R weakly similar to human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein; hypothetical protein complement(2717304..2718587) Listeria innocua Clip11262 1131546 NP_472030.1 CDS lin2701 NC_003212.1 2718910 2719764 R highly similar to fructose-1,6-bisphosphate aldolase type II; hypothetical protein complement(2718910..2719764) Listeria innocua Clip11262 1131547 NP_472031.1 CDS lin2702 NC_003212.1 2719933 2720853 R similar to YegS from E. coli; putative lipid kinase complement(2719933..2720853) Listeria innocua Clip11262 1131548 NP_472032.1 CDS ami NC_003212.1 2721169 2723481 D autolysin; amidase 2721169..2723481 Listeria innocua Clip11262 1131549 NP_472033.1 CDS pyrG NC_003212.1 2723531 2725129 R CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(2723531..2725129) Listeria innocua Clip11262 1131550 NP_472034.1 CDS lin2705 NC_003212.1 2725494 2726030 R similar to Bacillus subtilis RNA polymerase delta subunit; participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; DNA-directed RNA polymerase subunit delta complement(2725494..2726030) Listeria innocua Clip11262 1131551 NP_472035.1 CDS argS NC_003212.1 2726397 2728067 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(2726397..2728067) Listeria innocua Clip11262 1131552 NP_472036.1 CDS lin2707 NC_003212.1 2728064 2728513 R lin2707; hypothetical protein complement(2728064..2728513) Listeria innocua Clip11262 1131553 NP_472037.1 CDS lin2708 NC_003212.1 2728591 2729244 R hypothetical protein complement(2728591..2729244) Listeria innocua Clip11262 1131554 NP_472038.1 CDS lin2709 NC_003212.1 2729318 2729503 D similar to 4-oxalocrotonate isomerase; hypothetical protein 2729318..2729503 Listeria innocua Clip11262 1131555 NP_472039.1 CDS lin2710 NC_003212.1 2729542 2730864 R hypothetical protein complement(2729542..2730864) Listeria innocua Clip11262 1131556 NP_472040.1 CDS lin2711 NC_003212.1 2730888 2731724 R lin2711; hypothetical protein complement(2730888..2731724) Listeria innocua Clip11262 1131557 NP_472041.1 CDS lin2712 NC_003212.1 2732042 2732245 R lin2712; hypothetical protein complement(2732042..2732245) Listeria innocua Clip11262 1131558 NP_472042.1 CDS lin2713 NC_003212.1 2732269 2732592 R lin2713; hypothetical protein complement(2732269..2732592) Listeria innocua Clip11262 1131559 NP_472043.1 CDS lin2714 NC_003212.1 2732747 2734408 R similar to dipeptide ABC transporter (dipeptide-binding protein); hypothetical protein complement(2732747..2734408) Listeria innocua Clip11262 1131560 NP_472044.1 CDS lin2715 NC_003212.1 2734544 2735158 R lin2715; hypothetical protein complement(2734544..2735158) Listeria innocua Clip11262 1131561 NP_472045.1 CDS lin2716 NC_003212.1 2735182 2735814 R similar to nicotinamidase; hypothetical protein complement(2735182..2735814) Listeria innocua Clip11262 1131562 NP_472046.1 CDS lin2717 NC_003212.1 2735815 2736339 R similar to Chain A, Dihydrofolate Reductase; hypothetical protein complement(2735815..2736339) Listeria innocua Clip11262 1131563 NP_472047.1 CDS lin2718 NC_003212.1 2736342 2737340 R similar to zinc-binding dehydrogenase; hypothetical protein complement(2736342..2737340) Listeria innocua Clip11262 1131565 NP_472048.1 CDS lin2719 NC_003212.1 2737437 2737709 R lin2719; hypothetical protein complement(2737437..2737709) Listeria innocua Clip11262 1131567 NP_472049.1 CDS lin2720 NC_003212.1 2737758 2738669 R similar to cation transport protein (efflux); hypothetical protein complement(2737758..2738669) Listeria innocua Clip11262 1131568 NP_472050.1 CDS lin2721 NC_003212.1 2738800 2739627 R hypothetical protein complement(2738800..2739627) Listeria innocua Clip11262 1131569 NP_472051.1 CDS lin2722 NC_003212.1 2739742 2740617 D lin2722; hypothetical protein 2739742..2740617 Listeria innocua Clip11262 1131570 NP_472052.1 CDS lin2723 NC_003212.1 2740630 2740914 D hypothetical protein 2740630..2740914 Listeria innocua Clip11262 1131571 NP_472053.1 CDS lin2724 NC_003212.1 2741130 2743946 R internalin-like protein complement(2741130..2743946) Listeria innocua Clip11262 1131572 NP_472054.1 CDS lin2725 NC_003212.1 2744297 2744968 R similar to ABC transporter, ATP-binding protein; hypothetical protein complement(2744297..2744968) Listeria innocua Clip11262 1131573 NP_472055.1 CDS lin2726 NC_003212.1 2744968 2746056 R hypothetical protein complement(2744968..2746056) Listeria innocua Clip11262 1131574 NP_472056.1 CDS lin2727 NC_003212.1 2746135 2747514 R similar to two-component sensor histidine kinase; hypothetical protein complement(2746135..2747514) Listeria innocua Clip11262 1131576 NP_472057.1 CDS lin2728 NC_003212.1 2747511 2748188 R similar to two-component response regulator; hypothetical protein complement(2747511..2748188) Listeria innocua Clip11262 1131577 NP_472058.1 CDS lin2729 NC_003212.1 2748235 2749020 R similar to formate dehydrogenase associated protein; involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein complement(2748235..2749020) Listeria innocua Clip11262 1131579 NP_472059.1 CDS lin2730 NC_003212.1 2749082 2749558 R similar to Bacillus subtilis YrhD protein; hypothetical protein complement(2749082..2749558) Listeria innocua Clip11262 1131580 NP_472060.1 CDS lin2731 NC_003212.1 2749558 2752545 R similar to formate dehydrogenase alpha chain; hypothetical protein complement(2749558..2752545) Listeria innocua Clip11262 1131581 NP_472061.1 CDS lin2732 NC_003212.1 2753045 2753887 D hypothetical protein 2753045..2753887 Listeria innocua Clip11262 1131582 NP_472062.1 CDS lin2733 NC_003212.1 2753936 2755417 R similar to drug-export proteins; hypothetical protein complement(2753936..2755417) Listeria innocua Clip11262 1131583 NP_472063.1 CDS lin2734 NC_003212.1 2755518 2756405 R similar to transcription regulator TetR/AcrR family; hypothetical protein complement(2755518..2756405) Listeria innocua Clip11262 1131584 NP_472064.1 CDS lin2735 NC_003212.1 2756539 2757186 R lin2735; hypothetical protein complement(2756539..2757186) Listeria innocua Clip11262 1131585 NP_472065.1 CDS lin2736 NC_003212.1 2757203 2757739 R lin2736; hypothetical protein complement(2757203..2757739) Listeria innocua Clip11262 1131586 NP_472066.1 CDS lin2737 NC_003212.1 2763809 2764837 R similar to ATP binding proteins; hypothetical protein complement(2763809..2764837) Listeria innocua Clip11262 1131590 NP_472067.1 CDS lin2738 NC_003212.1 2765101 2766627 D GW repeat-containing surface protein 2765101..2766627 Listeria innocua Clip11262 1131591 NP_472068.1 CDS lin2739 NC_003212.1 2766671 2767522 R similar to oxidoreductase, aldo/keto reductase family; hypothetical protein complement(2766671..2767522) Listeria innocua Clip11262 1131592 NP_472069.1 CDS lin2740 NC_003212.1 2767544 2767966 R similar to transcription regulators (MerR family); hypothetical protein complement(2767544..2767966) Listeria innocua Clip11262 1131593 NP_472070.1 CDS lin2741 NC_003212.1 2768472 2768930 R lin2741; hypothetical protein complement(2768472..2768930) Listeria innocua Clip11262 1131594 NP_472071.1 CDS lin2742 NC_003212.1 2769814 2770404 R lin2742; hypothetical protein complement(2769814..2770404) Listeria innocua Clip11262 1131595 NP_472072.1 CDS lin2743 NC_003212.1 2770410 2770706 R lin2743; hypothetical protein complement(2770410..2770706) Listeria innocua Clip11262 1131596 NP_472073.1 CDS lin2744 NC_003212.1 2770707 2774711 R hypothetical protein complement(2770707..2774711) Listeria innocua Clip11262 1131597 NP_472074.1 CDS rpsI NC_003212.1 2775150 2775542 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(2775150..2775542) Listeria innocua Clip11262 1131599 NP_472075.1 CDS rplM NC_003212.1 2775564 2776001 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(2775564..2776001) Listeria innocua Clip11262 1131600 NP_472076.1 CDS truA NC_003212.1 2776196 2776942 R highly similar to pseudouridylate synthase I; mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(2776196..2776942) Listeria innocua Clip11262 1131601 NP_472077.1 CDS lin2748 NC_003212.1 2776948 2777745 R highly similar to Bacillus subtilis YbaF protein; hypothetical protein complement(2776948..2777745) Listeria innocua Clip11262 1131602 NP_472078.1 CDS cbiO NC_003212.1 2777748 2778614 R similar to ABC transporter (ATP-binding protein); with CbiNQ forms the ABC transporter for cobalt import; Bacillus spp. have two adjacent copies of this gene; cobalt transporter ATP-binding subunit complement(2777748..2778614) Listeria innocua Clip11262 1131604 NP_472079.1 CDS cbiO NC_003212.1 2778590 2779429 R similar to ABC transporter (ATP-binding protein); with CbiNQ forms the ABC transporter for cobalt import; Bacillus spp. have two adjacent copies of this gene; cobalt transporter ATP-binding subunit complement(2778590..2779429) Listeria innocua Clip11262 1131606 NP_472080.1 CDS lin2751 NC_003212.1 2779560 2780222 D hypothetical protein 2779560..2780222 Listeria innocua Clip11262 1131608 NP_472081.1 CDS lin2752 NC_003212.1 2780340 2781239 D lin2752; hypothetical protein 2780340..2781239 Listeria innocua Clip11262 1131609 NP_472082.1 CDS lin2753 NC_003212.1 2781281 2782375 R lin2753; hypothetical protein complement(2781281..2782375) Listeria innocua Clip11262 1131610 NP_472083.1 CDS rplQ NC_003212.1 2782617 2783024 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(2782617..2783024) Listeria innocua Clip11262 1131611 NP_472084.1 CDS lin2755 NC_003212.1 2783041 2783985 R highly similar to RNA polymerase (alpha subunit); catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(2783041..2783985) Listeria innocua Clip11262 1131612 NP_472085.1 CDS rpsK NC_003212.1 2784095 2784484 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(2784095..2784484) Listeria innocua Clip11262 1131613 NP_472086.1 CDS rpsM NC_003212.1 2784507 2784872 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(2784507..2784872) Listeria innocua Clip11262 1131614 NP_472087.1 CDS rpmJ NC_003212.1 2784891 2785004 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 complement(2784891..2785004) Listeria innocua Clip11262 1131615 NP_472088.1 CDS infA NC_003212.1 2785108 2785326 R highly similar to initiation factor IF-I; stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(2785108..2785326) Listeria innocua Clip11262 1131616 NP_472089.1 CDS adk NC_003212.1 2785714 2786361 R highly similar to adenylate kinases; essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(2785714..2786361) Listeria innocua Clip11262 1131617 NP_472090.1 CDS secY NC_003212.1 2786421 2787716 R highly similar to preprotein translocase subunit; forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(2786421..2787716) Listeria innocua Clip11262 1131618 NP_472091.1 CDS rplO NC_003212.1 2787716 2788156 R late assembly protein; 50S ribosomal protein L15 complement(2787716..2788156) Listeria innocua Clip11262 1131619 NP_472092.1 CDS rpmD NC_003212.1 2788214 2788393 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(2788214..2788393) Listeria innocua Clip11262 1131621 NP_472093.1 CDS rpsE NC_003212.1 2788410 2788913 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(2788410..2788913) Listeria innocua Clip11262 1131622 NP_472094.1 CDS rplR NC_003212.1 2788935 2789294 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(2788935..2789294) Listeria innocua Clip11262 1131623 NP_472095.1 CDS rplF NC_003212.1 2789334 2789870 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(2789334..2789870) Listeria innocua Clip11262 1131624 NP_472096.1 CDS rpsH NC_003212.1 2789901 2790299 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(2789901..2790299) Listeria innocua Clip11262 1131625 NP_472097.1 CDS rpsN NC_003212.1 2790330 2790515 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 complement(2790330..2790515) Listeria innocua Clip11262 1131626 NP_472098.1 CDS rplE NC_003212.1 2790546 2791085 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(2790546..2791085) Listeria innocua Clip11262 1131627 NP_472099.1 CDS rplX NC_003212.1 2791112 2791423 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(2791112..2791423) Listeria innocua Clip11262 1131628 NP_472100.1 CDS rplN NC_003212.1 2791461 2791829 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(2791461..2791829) Listeria innocua Clip11262 1131629 NP_472101.1 CDS rpsQ NC_003212.1 2791909 2792172 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(2791909..2792172) Listeria innocua Clip11262 1131630 NP_472102.1 CDS rpmC NC_003212.1 2792200 2792391 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(2792200..2792391) Listeria innocua Clip11262 1131631 NP_472103.1 CDS rplP NC_003212.1 2792381 2792815 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(2792381..2792815) Listeria innocua Clip11262 1131632 NP_472104.1 CDS rpsC NC_003212.1 2792818 2793474 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(2792818..2793474) Listeria innocua Clip11262 1131633 NP_472105.1 CDS rplV NC_003212.1 2793478 2793834 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(2793478..2793834) Listeria innocua Clip11262 1131635 NP_472106.1 CDS rpsS NC_003212.1 2793855 2794133 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(2793855..2794133) Listeria innocua Clip11262 1131637 NP_472107.1 CDS rplB NC_003212.1 2794221 2795054 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(2794221..2795054) Listeria innocua Clip11262 1131638 NP_472108.1 CDS rplW NC_003212.1 2795095 2795379 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(2795095..2795379) Listeria innocua Clip11262 1131639 NP_472109.1 CDS rplD NC_003212.1 2795379 2796002 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(2795379..2796002) Listeria innocua Clip11262 1131640 NP_472110.1 CDS rplC NC_003212.1 2796028 2796657 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(2796028..2796657) Listeria innocua Clip11262 1131642 NP_472111.1 CDS rpsJ NC_003212.1 2796692 2797000 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(2796692..2797000) Listeria innocua Clip11262 1131643 NP_472112.1 CDS lin2783 NC_003212.1 2797361 2798161 R similar to Bacillus subtilis YbaF protein; hypothetical protein complement(2797361..2798161) Listeria innocua Clip11262 1131644 NP_472113.1 CDS lin2784 NC_003212.1 2798181 2799140 R weakly similar to Escherichia coli MenA protein; catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(2798181..2799140) Listeria innocua Clip11262 1131645 NP_472114.1 CDS lin2785 NC_003212.1 2799222 2800304 R conserved hypothetical lipoprotein; hypothetical protein complement(2799222..2800304) Listeria innocua Clip11262 1131646 NP_472115.1 CDS lin2786 NC_003212.1 2800467 2801366 R conserved lipoprotein; hypothetical protein complement(2800467..2801366) Listeria innocua Clip11262 1131647 NP_472116.1 CDS lin2787 NC_003212.1 2801812 2803698 D similar to NADH dehydrogenase; hypothetical protein 2801812..2803698 Listeria innocua Clip11262 1131648 NP_472117.1 CDS lin2788 NC_003212.1 2803875 2804309 D lin2788; hypothetical protein 2803875..2804309 Listeria innocua Clip11262 1131649 NP_472118.1 CDS lin2789 NC_003212.1 2804342 2804884 D lin2789; hypothetical protein 2804342..2804884 Listeria innocua Clip11262 1131650 NP_472119.1 CDS lin2790 NC_003212.1 2804906 2805886 D similar to heptaprenyl diphosphate synthase component II; hypothetical protein 2804906..2805886 Listeria innocua Clip11262 1131651 NP_472120.1 CDS lin2791 NC_003212.1 2805977 2807308 D lin2791; hypothetical protein 2805977..2807308 Listeria innocua Clip11262 1131652 NP_472121.1 CDS lin2792 NC_003212.1 2807357 2808343 R lin2792; hypothetical protein complement(2807357..2808343) Listeria innocua Clip11262 1131653 NP_472122.1 CDS lin2793 NC_003212.1 2808370 2809182 R lin2793; hypothetical protein complement(2808370..2809182) Listeria innocua Clip11262 1131654 NP_472123.1 CDS lin2794 NC_003212.1 2809261 2810004 R lin2794; hypothetical protein complement(2809261..2810004) Listeria innocua Clip11262 1131655 NP_472124.1 CDS lin2795 NC_003212.1 2810005 2810724 R lin2795; hypothetical protein complement(2810005..2810724) Listeria innocua Clip11262 1131656 NP_472125.1 CDS lin2796 NC_003212.1 2810684 2811433 R similar to creatinine amidohydrolase; hypothetical protein complement(2810684..2811433) Listeria innocua Clip11262 1131658 NP_472126.1 CDS lin2797 NC_003212.1 2811446 2812438 R similar to Phosphotriesterase; hypothetical protein complement(2811446..2812438) Listeria innocua Clip11262 1131660 NP_472127.1 CDS ulaA NC_003212.1 2812509 2813807 R similar to hypothetical PTS enzyme IIC component; membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC complement(2812509..2813807) Listeria innocua Clip11262 1131661 NP_472128.1 CDS lin2799 NC_003212.1 2813834 2814106 R similar to hypothetical PTS enzyme IIB component; hypothetical protein complement(2813834..2814106) Listeria innocua Clip11262 1131662 NP_472129.1 CDS lin2800 NC_003212.1 2814109 2814543 R similar to mannitol-specific PTS enzyme IIA component; hypothetical protein complement(2814109..2814543) Listeria innocua Clip11262 1131663 NP_472130.1 CDS lin2801 NC_003212.1 2814737 2816803 R similar to transcriptional antiterminator; hypothetical protein complement(2814737..2816803) Listeria innocua Clip11262 1131665 NP_472131.1 CDS tuf NC_003212.1 2816958 2818145 R highly similar to translation elongation factor EF-Tu; EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(2816958..2818145) Listeria innocua Clip11262 1131666 NP_472132.1 CDS lin2803 NC_003212.1 2818254 2820341 R highly similar to translation elongation factor G; EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(2818254..2820341) Listeria innocua Clip11262 1131667 NP_472133.1 CDS rpsG NC_003212.1 2820407 2820877 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(2820407..2820877) Listeria innocua Clip11262 1131668 NP_472134.1 CDS rpsL NC_003212.1 2820908 2821321 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(2820908..2821321) Listeria innocua Clip11262 1131669 NP_472135.1 CDS lin2806 NC_003212.1 2821514 2822911 R similar to dGTP triphosphohydrolase; dGTPase family type 3 subfamily, presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(2821514..2822911) Listeria innocua Clip11262 1131670 NP_472136.1 CDS lin2807 NC_003212.1 2822927 2823406 R similar to spermidine/spermine N1-acetyl transferase; hypothetical protein complement(2822927..2823406) Listeria innocua Clip11262 1131671 NP_472137.1 CDS lin2808 NC_003212.1 2823537 2824181 R similar to ribulose-phosphate 3-epimerase; hypothetical protein complement(2823537..2824181) Listeria innocua Clip11262 1131672 NP_472138.1 CDS lin2809 NC_003212.1 2824178 2826193 R similar to transketolase; hypothetical protein complement(2824178..2826193) Listeria innocua Clip11262 1131673 NP_472139.1 CDS lin2810 NC_003212.1 2826227 2826901 R similar to ribulose-5-phosphate 3-epimerase; hypothetical protein complement(2826227..2826901) Listeria innocua Clip11262 1131674 NP_472140.1 CDS lin2811 NC_003212.1 2826910 2827350 R similar to ribose 5-phosphate epimerase; hypothetical protein complement(2826910..2827350) Listeria innocua Clip11262 1131675 NP_472141.1 CDS lin2812 NC_003212.1 2827545 2828576 R similar to polyol dehydrogenase; hypothetical protein complement(2827545..2828576) Listeria innocua Clip11262 1131676 NP_472142.1 CDS lin2813 NC_003212.1 2828578 2829630 R similar to sorbitol dehydrogenase; hypothetical protein complement(2828578..2829630) Listeria innocua Clip11262 1131677 NP_472143.1 CDS lin2814 NC_003212.1 2829667 2830938 R similar to PTS system galactitol-specific enzyme IIC component; hypothetical protein complement(2829667..2830938) Listeria innocua Clip11262 1131679 NP_472144.1 CDS lin2815 NC_003212.1 2831000 2831281 R similar to PTS system galactitol-specific enzyme IIB component; hypothetical protein complement(2831000..2831281) Listeria innocua Clip11262 1131680 NP_472145.1 CDS lin2816 NC_003212.1 2831338 2831802 R similar to PTS system galactitol-specific enzyme IIA component; hypothetical protein complement(2831338..2831802) Listeria innocua Clip11262 1131681 NP_472146.1 CDS lin2817 NC_003212.1 2831836 2833905 R similar to transcriptional antiterminator (BglG family); hypothetical protein complement(2831836..2833905) Listeria innocua Clip11262 1131682 NP_472147.1 CDS lin2818 NC_003212.1 2834275 2835087 R lin2818; hypothetical protein complement(2834275..2835087) Listeria innocua Clip11262 1131683 NP_472148.1 CDS lin2819 NC_003212.1 2835161 2835523 R hypothetical protein complement(2835161..2835523) Listeria innocua Clip11262 1131684 NP_472149.1 CDS lin2820 NC_003212.1 2835842 2836312 D hypothetical protein 2835842..2836312 Listeria innocua Clip11262 1131685 NP_472150.1 CDS lin2821 NC_003212.1 2836358 2836813 D similar to ribose 5-phosphate epimerase; catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B 2836358..2836813 Listeria innocua Clip11262 1131686 NP_472151.1 CDS lin2822 NC_003212.1 2837012 2837353 D lin2822; hypothetical protein 2837012..2837353 Listeria innocua Clip11262 1131687 NP_472152.1 CDS lin2823 NC_003212.1 2837366 2838622 D similar to UV-damage repair protein; hypothetical protein 2837366..2838622 Listeria innocua Clip11262 1131688 NP_472153.1 CDS lin2825 NC_003212.1 2838831 2839436 R similar to hydrolase (esterase) (truncated, N-terminal end); hypothetical protein complement(2838831..2839436) Listeria innocua Clip11262 1131690 NP_472154.1 CDS lin2826 NC_003212.1 2839477 2840172 R similar to two components response regulator; hypothetical protein complement(2839477..2840172) Listeria innocua Clip11262 1131691 NP_472155.1 CDS lin2827 NC_003212.1 2840169 2842859 R similar to the two components sensor protein kdpD; hypothetical protein complement(2840169..2842859) Listeria innocua Clip11262 1131692 NP_472156.1 CDS kdpC NC_003212.1 2842878 2843450 R potassium-transporting atpase c chain complement(2842878..2843450) Listeria innocua Clip11262 1131693 NP_472157.1 CDS kdpB NC_003212.1 2843465 2845510 R One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B complement(2843465..2845510) Listeria innocua Clip11262 1131694 NP_472158.1 CDS lin2830 NC_003212.1 2845522 2847207 R highly similar to potassium-transporting atpase a chain; catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(2845522..2847207) Listeria innocua Clip11262 1131695 NP_472159.1 CDS lin2831 NC_003212.1 2847548 2847853 D similar to cellobiose phosphotransferase enzyme IIB component; hypothetical protein 2847548..2847853 Listeria innocua Clip11262 1131696 NP_472160.1 CDS lin2832 NC_003212.1 2847990 2849297 D similar to cellobiose phosphotransferase enzyme IIC component; hypothetical protein 2847990..2849297 Listeria innocua Clip11262 1131697 NP_472161.1 CDS lin2833 NC_003212.1 2849334 2849636 D similar to cellobiose phosphotransferase enzyme IIA component; hypothetical protein 2849334..2849636 Listeria innocua Clip11262 1131698 NP_472162.1 CDS lin2834 NC_003212.1 2850081 2851184 R similar to cell division protein FtsW; hypothetical protein complement(2850081..2851184) Listeria innocua Clip11262 1131699 NP_472163.1 CDS lin2835 NC_003212.1 2851181 2852311 R similar to cell division protein FtsW; hypothetical protein complement(2851181..2852311) Listeria innocua Clip11262 1131700 NP_472164.1 CDS lin2836 NC_003212.1 2852312 2854882 R highly similar to Mg2+ transport ATPase; hypothetical protein complement(2852312..2854882) Listeria innocua Clip11262 1131702 NP_472165.1 CDS lin2837 NC_003212.1 2855437 2856003 R similar to transcription regulator, TetR family; hypothetical protein complement(2855437..2856003) Listeria innocua Clip11262 1131704 NP_472166.1 CDS lin2838 NC_003212.1 2856166 2857950 D similar to autolysin, N-acetylmuramidase; cell wall hydrolase; muramidase-2 like protein in Enterococcus faecalis; in Enterococcus faecalis a mutant in this gene has no effect on virulence in mouse models; Listeria monocytogenes MurA in involved in general autolysis; contains an N-terminal muramidase domain and C-terminal LysM repeats for cell wall-anchoring; autolysin 2856166..2857950 Listeria innocua Clip11262 1131705 NP_472167.1 CDS lin2839 NC_003212.1 2858069 2858368 R lin2839; hypothetical protein complement(2858069..2858368) Listeria innocua Clip11262 1131706 NP_472168.1 CDS lin2840 NC_003212.1 2859005 2859334 R lin2840; hypothetical protein complement(2859005..2859334) Listeria innocua Clip11262 1131707 NP_472169.1 CDS tmk NC_003212.1 2859442 2860068 R similar to thymidylate kinase; catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase complement(2859442..2860068) Listeria innocua Clip11262 1131708 NP_472170.1 CDS lin2842 NC_003212.1 2860121 2861500 R similar to lysine decarboxylase; hypothetical protein complement(2860121..2861500) Listeria innocua Clip11262 1131709 NP_472171.1 CDS lin2843 NC_003212.1 2861684 2862673 D similar to dihydroxyacetone kinase; with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK 2861684..2862673 Listeria innocua Clip11262 1131710 NP_472172.1 CDS lin2844 NC_003212.1 2862695 2863291 D similar to hypothetical dihydroxyacetone kinase; hypothetical protein 2862695..2863291 Listeria innocua Clip11262 1131711 NP_472173.1 CDS lin2845 NC_003212.1 2863295 2863669 D lin2845; phosphotransferase mannnose-specific family component IIA 2863295..2863669 Listeria innocua Clip11262 1131713 NP_472174.1 CDS lin2846 NC_003212.1 2863775 2864626 D similar to putative transcription regulator; hypothetical protein 2863775..2864626 Listeria innocua Clip11262 1131714 NP_472175.1 CDS lin2847 NC_003212.1 2864743 2865582 D similar to conserved hypothetical protein; hypothetical protein 2864743..2865582 Listeria innocua Clip11262 1131715 NP_472176.1 CDS lin2848 NC_003212.1 2865709 2866551 D similar to aldo/keto reductase; hypothetical protein 2865709..2866551 Listeria innocua Clip11262 1131716 NP_472177.1 CDS lin2849 NC_003212.1 2866596 2866838 R similar to Bacillus subtilis YaaL protein; hypothetical protein complement(2866596..2866838) Listeria innocua Clip11262 1131717 NP_472178.1 CDS recR NC_003212.1 2866853 2867449 R highly similar to recombination protein recR; involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(2866853..2867449) Listeria innocua Clip11262 1131718 NP_472179.1 CDS lin2851 NC_003212.1 2867559 2867876 R highly similar to Bacillus subtilis YaaK protein; hypothetical protein complement(2867559..2867876) Listeria innocua Clip11262 1131719 NP_472180.1 CDS lin2852 NC_003212.1 2867906 2869645 R highly similar to DNA polymerase III (gamma and tau subunits); hypothetical protein complement(2867906..2869645) Listeria innocua Clip11262 1131720 NP_472181.1 CDS lin2853 NC_003212.1 2869896 2870360 R lin2853; hypothetical protein complement(2869896..2870360) Listeria innocua Clip11262 1131721 NP_472182.1 CDS lin2854 NC_003212.1 2870378 2870560 R lin2854; hypothetical protein complement(2870378..2870560) Listeria innocua Clip11262 1131722 NP_472183.1 CDS lin2855 NC_003212.1 2870563 2870784 R lin2855; hypothetical protein complement(2870563..2870784) Listeria innocua Clip11262 1131723 NP_472184.1 CDS lin2856 NC_003212.1 2870918 2872282 R similar to PTS system, cellobiose-specific enzyme IIC; hypothetical protein complement(2870918..2872282) Listeria innocua Clip11262 1131724 NP_472185.1 CDS lin2857 NC_003212.1 2872725 2872880 D lin2857; hypothetical protein 2872725..2872880 Listeria innocua Clip11262 1131725 NP_472186.1 CDS lin2858 NC_003212.1 2872925 2873566 R lin2858; hypothetical protein complement(2872925..2873566) Listeria innocua Clip11262 1131726 NP_472187.1 CDS lin2859 NC_003212.1 2873813 2874115 D hypothetical protein 2873813..2874115 Listeria innocua Clip11262 1131727 NP_472188.1 CDS lin2860 NC_003212.1 2874273 2875787 R highly similar to gluconate kinase; hypothetical protein complement(2874273..2875787) Listeria innocua Clip11262 1131728 NP_472189.1 CDS lin2861 NC_003212.1 2875899 2876837 R GW repeat-containing protein complement(2875899..2876837) Listeria innocua Clip11262 1131729 NP_472190.1 CDS lin2862 NC_003212.1 2876879 2877841 R pepdidoglycan bound protein complement(2876879..2877841) Listeria innocua Clip11262 1131730 NP_472191.1 CDS lin2863 NC_003212.1 2877983 2879722 R highly similar to ABC transporter (ATP-binding protein) required for expression of cytochrome BD; hypothetical protein complement(2877983..2879722) Listeria innocua Clip11262 1131731 NP_472192.1 CDS lin2864 NC_003212.1 2879722 2881446 R highly similar to ABC transporter required for expression of cytochrome BD; hypothetical protein complement(2879722..2881446) Listeria innocua Clip11262 1131732 NP_472193.1 CDS lin2865 NC_003212.1 2881446 2882459 R highly similar to cytochrome D ubiquinol oxidase subunit II; hypothetical protein complement(2881446..2882459) Listeria innocua Clip11262 1131734 NP_472194.1 CDS lin2866 NC_003212.1 2882446 2883852 R highly similar to cytochrome D ubiquinol oxidase subunit I; hypothetical protein complement(2882446..2883852) Listeria innocua Clip11262 1131736 NP_472195.1 CDS lin2867 NC_003212.1 2884242 2884706 R hypothetical protein complement(2884242..2884706) Listeria innocua Clip11262 1131738 NP_472196.1 CDS lin2868 NC_003212.1 2884902 2886479 D similar to acetate-CoA ligase; hypothetical protein 2884902..2886479 Listeria innocua Clip11262 1131739 NP_472197.1 CDS lin2869 NC_003212.1 2886521 2887240 R similar to glucosamine-6-phosphate isomerase; putative 6-phosphogluconolactonase complement(2886521..2887240) Listeria innocua Clip11262 1131740 NP_472198.1 CDS lin2870 NC_003212.1 2887320 2888054 D similar to merR-family transcriptional regulator; hypothetical protein 2887320..2888054 Listeria innocua Clip11262 1131741 NP_472199.1 CDS lin2871 NC_003212.1 2888108 2888569 D hypothetical protein 2888108..2888569 Listeria innocua Clip11262 1131742 NP_472200.1 CDS lin2872 NC_003212.1 2888589 2889032 R hypothetical protein complement(2888589..2889032) Listeria innocua Clip11262 1131743 NP_472201.1 CDS lin2873 NC_003212.1 2889090 2890442 R hypothetical protein complement(2889090..2890442) Listeria innocua Clip11262 1131744 NP_472202.1 CDS lin2874 NC_003212.1 2890439 2890888 R similar to transcription regulators; hypothetical protein complement(2890439..2890888) Listeria innocua Clip11262 1131745 NP_472203.1 CDS lin2875 NC_003212.1 2891058 2891939 D hypothetical protein 2891058..2891939 Listeria innocua Clip11262 1131746 NP_472204.1 CDS lin2876 NC_003212.1 2892024 2892479 D similar to transcription regulator MerR family; hypothetical protein 2892024..2892479 Listeria innocua Clip11262 1131747 NP_472205.1 CDS lin2877 NC_003212.1 2892479 2892883 D hypothetical protein 2892479..2892883 Listeria innocua Clip11262 1131749 NP_472206.1 CDS lin2878 NC_003212.1 2892927 2893538 R similar to phosphatase; hypothetical protein complement(2892927..2893538) Listeria innocua Clip11262 1131750 NP_472207.1 CDS lin2879 NC_003212.1 2893552 2893920 R similar to transcription regulator (RpiR family); hypothetical protein complement(2893552..2893920) Listeria innocua Clip11262 1131751 NP_472208.1 CDS lin2880 NC_003212.1 2894028 2894984 R similar to transcriptional regulator (LacI family); hypothetical protein complement(2894028..2894984) Listeria innocua Clip11262 1131752 NP_472209.1 CDS lin2881 NC_003212.1 2895052 2896386 R conserved hypothetical protein similar to hypothetical hemolysin; hypothetical protein complement(2895052..2896386) Listeria innocua Clip11262 1131753 NP_472210.1 CDS lin2882 NC_003212.1 2896479 2897168 R similar to regulatory proteins of the SIR2 family; Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase complement(2896479..2897168) Listeria innocua Clip11262 1131754 NP_472211.1 CDS lin2883 NC_003212.1 2897161 2897451 R lin2883; hypothetical protein complement(2897161..2897451) Listeria innocua Clip11262 1131755 NP_472212.1 CDS lin2884 NC_003212.1 2897441 2898649 R similar to drug-efflux transporters; hypothetical protein complement(2897441..2898649) Listeria innocua Clip11262 1131757 NP_472213.1 CDS lin2885 NC_003212.1 2898766 2899113 R lin2885; hypothetical protein complement(2898766..2899113) Listeria innocua Clip11262 1131759 NP_472214.1 CDS lin2886 NC_003212.1 2899132 2899776 R similar to transaldolase; similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; putative translaldolase complement(2899132..2899776) Listeria innocua Clip11262 1131760 NP_472215.1 CDS lin2887 NC_003212.1 2899921 2900610 R weakly similar to transcription regulators CRP/FNR family; hypothetical protein complement(2899921..2900610) Listeria innocua Clip11262 1131761 NP_472216.1 CDS lin2888 NC_003212.1 2900941 2902668 D similar to ABC transporter (ATP-binding protein); hypothetical protein 2900941..2902668 Listeria innocua Clip11262 1131762 NP_472217.1 CDS lin2889 NC_003212.1 2902721 2902972 R lin2889; hypothetical protein complement(2902721..2902972) Listeria innocua Clip11262 1131763 NP_472218.1 CDS serS NC_003212.1 2902992 2904275 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(2902992..2904275) Listeria innocua Clip11262 1131764 NP_472219.1 CDS lin2891 NC_003212.1 2904611 2905030 R similar to Bacillus subtilis stress protein YdaG; hypothetical protein complement(2904611..2905030) Listeria innocua Clip11262 1131765 NP_472220.1 CDS lin2892 NC_003212.1 2905161 2905733 D similar to glutamine amidotransferase; hypothetical protein 2905161..2905733 Listeria innocua Clip11262 1131766 NP_472221.1 CDS lin2893 NC_003212.1 2905730 2907436 D similar to para-aminobenzoate synthase component I; hypothetical protein 2905730..2907436 Listeria innocua Clip11262 1131767 NP_472222.1 CDS lin2894 NC_003212.1 2907598 2909319 D similar to ABC transporter, ATP-binding protein; hypothetical protein 2907598..2909319 Listeria innocua Clip11262 1131768 NP_472223.1 CDS lin2895 NC_003212.1 2909319 2911091 D similar to ABC transporter, ATP-binding protein; hypothetical protein 2909319..2911091 Listeria innocua Clip11262 1131770 NP_472224.1 CDS lin2896 NC_003212.1 2911296 2911685 D lin2896; hypothetical protein 2911296..2911685 Listeria innocua Clip11262 1131771 NP_472225.1 CDS lin2897 NC_003212.1 2911566 2912903 R similar to D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5); hypothetical protein complement(2911566..2912903) Listeria innocua Clip11262 1131773 NP_472226.1 CDS lin2898 NC_003212.1 2913080 2914747 R similar to acylase and diesterase; hypothetical protein complement(2913080..2914747) Listeria innocua Clip11262 1131774 NP_472227.1 CDS lin2900 NC_003212.1 2917032 2918804 R similar to ATP-dependent DNA helicases; hypothetical protein complement(2917032..2918804) Listeria innocua Clip11262 1131776 NP_472228.1 CDS lin2901 NC_003212.1 2918964 2920430 R similar to inosine-monophosphate dehydrogenase; hypothetical protein complement(2918964..2920430) Listeria innocua Clip11262 1131777 NP_472229.1 CDS lin2902 NC_003212.1 2920719 2921249 R hypothetical protein complement(2920719..2921249) Listeria innocua Clip11262 1131778 NP_472230.1 CDS lin2903 NC_003212.1 2921307 2922917 R similar to ABC transporter (ATP-binding protein); hypothetical protein complement(2921307..2922917) Listeria innocua Clip11262 1131779 NP_472231.1 CDS lin2904 NC_003212.1 2923435 2924889 D similar to beta-glucosidase; hypothetical protein 2923435..2924889 Listeria innocua Clip11262 1131780 NP_472232.1 CDS lin2905 NC_003212.1 2924935 2925237 D similar to PTS cellobiose-specific enzyme IIB; hypothetical protein 2924935..2925237 Listeria innocua Clip11262 1131781 NP_472233.1 CDS lin2906 NC_003212.1 2925271 2926623 D similar to PTS cellobiose-specific enzyme IIC; hypothetical protein 2925271..2926623 Listeria innocua Clip11262 1131782 NP_472234.1 CDS lin2907 NC_003212.1 2926635 2927519 D similar to xylose operon regulatory protein and to glucose kinase; hypothetical protein 2926635..2927519 Listeria innocua Clip11262 1131783 NP_472235.1 CDS lin2908 NC_003212.1 2927512 2927820 D similar to PTS cellobiose-specific enzyme IIA; hypothetical protein 2927512..2927820 Listeria innocua Clip11262 1131785 NP_472236.1 CDS lin2909 NC_003212.1 2927860 2928594 R similar to hypothetical transcriptional regulator; hypothetical protein complement(2927860..2928594) Listeria innocua Clip11262 1131786 NP_472237.1 CDS lin2910 NC_003212.1 2928694 2929368 R lin2910; hypothetical protein complement(2928694..2929368) Listeria innocua Clip11262 1131787 NP_472238.1 CDS lin2911 NC_003212.1 2929421 2930551 R hypothetical membrane protein; hypothetical protein complement(2929421..2930551) Listeria innocua Clip11262 1131788 NP_472239.1 CDS lin2912 NC_003212.1 2930580 2931467 R similar to ABC transporter, ATP-binding protein; hypothetical protein complement(2930580..2931467) Listeria innocua Clip11262 1131789 NP_472240.1 CDS lin2913 NC_003212.1 2931631 2933961 D similar to gamma-glutamylcysteine synthetase (for the N_terminal part) and to cyanophycin synthetase (C-terminal part); Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine; bifunctional glutamate--cysteine ligase/glutathione synthetase 2931631..2933961 Listeria innocua Clip11262 1131790 NP_472241.1 CDS lin2914 NC_003212.1 2934186 2934809 R similar to ABC transporter, ATP-binding protein; hypothetical protein complement(2934186..2934809) Listeria innocua Clip11262 1131791 NP_472242.1 CDS lin2915 NC_003212.1 2934802 2936970 R hypothetical membrane protein; hypothetical protein complement(2934802..2936970) Listeria innocua Clip11262 1131792 NP_472243.1 CDS lin2916 NC_003212.1 2937485 2938675 D similar to efflux protein; hypothetical protein 2937485..2938675 Listeria innocua Clip11262 1131794 NP_472244.1 CDS lin2917 NC_003212.1 2938809 2939318 R lin2917; hypothetical protein complement(2938809..2939318) Listeria innocua Clip11262 1131795 NP_472245.1 CDS lin2918 NC_003212.1 2939537 2940016 R lin2918; hypothetical protein complement(2939537..2940016) Listeria innocua Clip11262 1131796 NP_472246.1 CDS lin2919 NC_003212.1 2940191 2941291 R similar to probable GTP-binding protein; translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(2940191..2941291) Listeria innocua Clip11262 1131797 NP_472247.1 CDS kat NC_003212.1 2941440 2942906 R catalase complement(2941440..2942906) Listeria innocua Clip11262 1131798 NP_472248.1 CDS lin2921 NC_003212.1 2943055 2943252 R hypothetical protein complement(2943055..2943252) Listeria innocua Clip11262 1131799 NP_472249.1 CDS parB NC_003212.1 2943265 2944116 R partition protein ParB homolg complement(2943265..2944116) Listeria innocua Clip11262 1131800 NP_472250.1 CDS parA NC_003212.1 2944109 2944870 R partition protein, ParA-like protein complement(2944109..2944870) Listeria innocua Clip11262 1131801 NP_472251.1 CDS lin2924 NC_003212.1 2945095 2945853 R lin2924; hypothetical protein complement(2945095..2945853) Listeria innocua Clip11262 1131803 NP_472252.1 CDS lin2925 NC_003212.1 2946019 2946318 R lin2925; hypothetical protein complement(2946019..2946318) Listeria innocua Clip11262 1131804 NP_472253.1 CDS lin2926 NC_003212.1 2946330 2947184 R highly similar to Bacillus subtilis DNA-binding protein Spo0J-like homolog YyaA; hypothetical protein complement(2946330..2947184) Listeria innocua Clip11262 1131805 NP_472254.1 CDS lin2927 NC_003212.1 2947365 2948171 R similar to Escherichia coli RpiR transcription regulator; hypothetical protein complement(2947365..2948171) Listeria innocua Clip11262 1131806 NP_472255.1 CDS lin2928 NC_003212.1 2948155 2949060 R similar to transcription regulator; hypothetical protein complement(2948155..2949060) Listeria innocua Clip11262 1131807 NP_472256.1 CDS lin2929 NC_003212.1 2949085 2949531 R similar to phosphotransferase system mannitol-specific enzyme IIA; hypothetical protein complement(2949085..2949531) Listeria innocua Clip11262 1131809 NP_472257.1 CDS lin2930 NC_003212.1 2949544 2950200 R similar to phosphatase; hypothetical protein complement(2949544..2950200) Listeria innocua Clip11262 1131810 NP_472258.1 CDS lin2931 NC_003212.1 2950263 2951669 R similar to phosphotransferase system mannitol-specific enzyme IIBC; hypothetical protein complement(2950263..2951669) Listeria innocua Clip11262 1131811 NP_472259.1 CDS lin2932 NC_003212.1 2951703 2952704 R similar to dehydrogenase; hypothetical protein complement(2951703..2952704) Listeria innocua Clip11262 1131812 NP_472260.1 CDS lin2933 NC_003212.1 2952724 2953419 R similar to a putative N-acetylmannosamine-6-phosphate epimerase; Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase complement(2952724..2953419) Listeria innocua Clip11262 1131813 NP_472261.1 CDS gidB NC_003212.1 2953621 2954337 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(2953621..2954337) Listeria innocua Clip11262 1131814 NP_472262.1 CDS lin2935 NC_003212.1 2954768 2955133 R lin2935; hypothetical protein complement(2954768..2955133) Listeria innocua Clip11262 1131815 NP_472263.1 CDS lin2936 NC_003212.1 2955126 2956409 R lin2936; hypothetical protein complement(2955126..2956409) Listeria innocua Clip11262 1131816 NP_472264.1 CDS lin2937 NC_003212.1 2956412 2956798 R hypothetical secreted protein; hypothetical protein complement(2956412..2956798) Listeria innocua Clip11262 1131818 NP_472265.1 CDS lin2938 NC_003212.1 2956910 2957302 R hypothetical secreted protein; hypothetical protein complement(2956910..2957302) Listeria innocua Clip11262 1131820 NP_472266.1 CDS lin2939 NC_003212.1 2957430 2957807 R hypothetical secreted protein; hypothetical protein complement(2957430..2957807) Listeria innocua Clip11262 1131821 NP_472267.1 CDS lin2940 NC_003212.1 2958038 2959000 R similar to abortive phage resistance mechanism [Lactococcus lactis]; hypothetical protein complement(2958038..2959000) Listeria innocua Clip11262 1131822 NP_472268.1 CDS lin2941 NC_003212.1 2959004 2960995 R lin2941; hypothetical protein complement(2959004..2960995) Listeria innocua Clip11262 1131823 NP_472269.1 CDS lin2942 NC_003212.1 2961357 2963246 R highly similar to GidA protein; GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA complement(2961357..2963246) Listeria innocua Clip11262 1131825 NP_472270.1 CDS trmE NC_003212.1 2963271 2964644 R similar to GTPase; in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(2963271..2964644) Listeria innocua Clip11262 1131826 NP_472271.1 CDS lin2944 NC_003212.1 2965002 2965820 D similar to D-alanyl-D-alanine carboxypeptidase; hypothetical protein 2965002..2965820 Listeria innocua Clip11262 1131827 NP_472272.1 CDS lin2945 NC_003212.1 2965871 2966446 R lin2945; hypothetical protein complement(2965871..2966446) Listeria innocua Clip11262 1131828 NP_472273.1 CDS lin2946 NC_003212.1 2966428 2967135 R lin2946; hypothetical protein complement(2966428..2967135) Listeria innocua Clip11262 1131829 NP_472274.1 CDS lin2947 NC_003212.1 2967155 2967682 R similar to transcriptional regulator; hypothetical protein complement(2967155..2967682) Listeria innocua Clip11262 1131831 NP_472275.1 CDS fabG NC_003212.1 2967835 2968566 D similar to reductases; catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 2967835..2968566 Listeria innocua Clip11262 1131832 NP_472276.1 CDS lin2949 NC_003212.1 2968613 2969818 R similar to transport protein; hypothetical protein complement(2968613..2969818) Listeria innocua Clip11262 1131833 NP_472277.1 CDS lin2950 NC_003212.1 2969906 2971096 R similar to peptidases; hypothetical protein complement(2969906..2971096) Listeria innocua Clip11262 1131834 NP_472278.1 CDS lin2951 NC_003212.1 2971112 2972512 R similar to transmembrane efflux protein; hypothetical protein complement(2971112..2972512) Listeria innocua Clip11262 1131835 NP_472279.1 CDS lin2952 NC_003212.1 2972512 2973714 R similar to carboxypeptidase; hypothetical protein complement(2972512..2973714) Listeria innocua Clip11262 1131836 NP_472280.1 CDS lin2953 NC_003212.1 2973909 2976251 R amino-terminal domain-containing protein complement(2973909..2976251) Listeria innocua Clip11262 1131838 NP_472281.1 CDS lin2954 NC_003212.1 2976380 2976703 R lin2954; hypothetical protein complement(2976380..2976703) Listeria innocua Clip11262 1131839 NP_472282.1 CDS lin2955 NC_003212.1 2976711 2977952 R similar to an hypothetical protein from Thermotoga maritima; hypothetical protein complement(2976711..2977952) Listeria innocua Clip11262 1131840 NP_472283.1 CDS lin2956 NC_003212.1 2978041 2979228 R similar to D-3-phosphoglycerate dehydrogenase; hypothetical protein complement(2978041..2979228) Listeria innocua Clip11262 1131841 NP_472284.1 CDS lin2957 NC_003212.1 2979221 2980312 R highly similar to phosphoserine aminotransferase; catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase complement(2979221..2980312) Listeria innocua Clip11262 1131842 NP_472285.1 CDS lin2959 NC_003212.1 2981458 2981832 R similar to efflux proteins (truncated, N-terminal end); hypothetical protein complement(2981458..2981832) Listeria innocua Clip11262 1131845 NP_472286.1 CDS lin2960 NC_003212.1 2981846 2982268 R similar to transcriptional regulator (MarR family); hypothetical protein complement(2981846..2982268) Listeria innocua Clip11262 1131846 NP_472287.1 CDS lin2961 NC_003212.1 2982372 2982725 R lin2961; hypothetical protein complement(2982372..2982725) Listeria innocua Clip11262 1131847 NP_472288.1 CDS lin2962 NC_003212.1 2982919 2983518 D similar to yeast protein Frm2p involved in fatty acid signaling; hypothetical protein 2982919..2983518 Listeria innocua Clip11262 1131848 NP_472289.1 CDS lin2963 NC_003212.1 2983576 2983896 R similar to thioredoxin; hypothetical protein complement(2983576..2983896) Listeria innocua Clip11262 1131849 NP_472290.1 CDS lin2964 NC_003212.1 2984019 2984681 R similar to phosphoglucomutase; hypothetical protein complement(2984019..2984681) Listeria innocua Clip11262 1131850 NP_472291.1 CDS lin2965 NC_003212.1 2984678 2985799 R hypothetical protein complement(2984678..2985799) Listeria innocua Clip11262 1131851 NP_472292.1 CDS lin2966 NC_003212.1 2985796 2987973 R similar to a maltose phosphorylase; hypothetical protein complement(2985796..2987973) Listeria innocua Clip11262 1131853 NP_472293.1 CDS lin2967 NC_003212.1 2987970 2989001 R similar to oxidoreductases; hypothetical protein complement(2987970..2989001) Listeria innocua Clip11262 1131854 NP_472294.1 CDS lin2968 NC_003212.1 2989058 2989852 R highly similar to an Escherichia coli protein; hypothetical protein complement(2989058..2989852) Listeria innocua Clip11262 1131855 NP_472295.1 CDS lin2969 NC_003212.1 2989865 2990917 R similar to alcohol dehydrogenase; hypothetical protein complement(2989865..2990917) Listeria innocua Clip11262 1131856 NP_472296.1 CDS lin2970 NC_003212.1 2990936 2991787 R similar to sugar ABC transporter permease protein; hypothetical protein complement(2990936..2991787) Listeria innocua Clip11262 1131857 NP_472297.1 CDS lin2971 NC_003212.1 2991774 2992655 R similar to sugar ABC transporter permease protein; hypothetical protein complement(2991774..2992655) Listeria innocua Clip11262 1131858 NP_472298.1 CDS lin2972 NC_003212.1 2992731 2994023 R similar to sugar binding protein (ABC transporter); hypothetical protein complement(2992731..2994023) Listeria innocua Clip11262 1131859 NP_472299.1 CDS lin2973 NC_003212.1 2994020 2995720 R similar to Sucrose phosphorylase; hypothetical protein complement(2994020..2995720) Listeria innocua Clip11262 1131860 NP_472300.1 CDS lin2974 NC_003212.1 2995943 2996968 D similar to transcriptional regulator; hypothetical protein 2995943..2996968 Listeria innocua Clip11262 1131862 NP_472301.1 CDS lin2975 NC_003212.1 2997108 2999102 R lin2975; hypothetical protein complement(2997108..2999102) Listeria innocua Clip11262 1131863 NP_472302.1 CDS lin2976 NC_003212.1 2999283 2999825 R hypothetical protein complement(2999283..2999825) Listeria innocua Clip11262 1131864 NP_472303.1 CDS lin2977 NC_003212.1 2999980 3001392 D similar to transmembrane efflux proteins; hypothetical protein 2999980..3001392 Listeria innocua Clip11262 1131865 NP_472304.1 CDS lin2978 NC_003212.1 3001434 3001748 R highly similar to Bacillus subtilis YulD protein; hypothetical protein complement(3001434..3001748) Listeria innocua Clip11262 1131866 NP_472305.1 CDS lin2979 NC_003212.1 3001761 3002582 R highly similar to rhamnulose-1-phosphate aldolase; rhamnulose-1-phosphate aldolase complement(3001761..3002582) Listeria innocua Clip11262 1131867 NP_472306.1 CDS lin2980 NC_003212.1 3002595 3003857 R highly similar to L-rhamnose isomerase; catalyzes the formation of L-rhamnulose from L-rhamnose; L-rhamnose isomerase complement(3002595..3003857) Listeria innocua Clip11262 1131868 NP_472307.1 CDS lin2981 NC_003212.1 3003870 3005321 R similar to rhamnulokinase; hypothetical protein complement(3003870..3005321) Listeria innocua Clip11262 1131869 NP_472308.1 CDS lin2982 NC_003212.1 3005340 3006608 R similar to sugar transport proteins; hypothetical protein complement(3005340..3006608) Listeria innocua Clip11262 1131870 NP_472309.1 CDS lin2983 NC_003212.1 3006731 3007711 D similar to AraC-type regulatory protein; hypothetical protein 3006731..3007711 Listeria innocua Clip11262 1131871 NP_472310.1 CDS lin2984 NC_003212.1 3007762 3008223 R lin2984; hypothetical protein complement(3007762..3008223) Listeria innocua Clip11262 1131872 NP_472311.1 CDS lin2985 NC_003212.1 3008278 3008898 R highly similar to Bacillus subtilis Jag protein; hypothetical protein complement(3008278..3008898) Listeria innocua Clip11262 1131873 NP_472312.1 CDS lin2986 NC_003212.1 3008895 3009758 R highly similar to Bacillus subtilis SpoIIIJ protein; hypothetical protein complement(3008895..3009758) Listeria innocua Clip11262 1131874 NP_472313.1 CDS rnpA NC_003212.1 3009799 3010158 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(3009799..3010158) Listeria innocua Clip11262 1131876 NP_472314.1 CDS rpmH NC_003212.1 3010248 3010382 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(3010248..3010382) Listeria innocua Clip11262 1131877 NP_472315.1 CDS lin2989 NC_003212.1 3010550 3011020 R hypothetical protein complement(3010550..3011020) Listeria innocua Clip11262 1131878 NP_569158.1 CDS pli0001 NC_003383.1 40 534 R pli0001; similar to insertion sequence ATP binding protein; hypothetical protein complement(40..534) Listeria innocua Clip11262 3125732 NP_569159.1 CDS pli0002 NC_003383.1 648 809 R pli0002; hypothetical protein complement(648..809) Listeria innocua Clip11262 3125733 NP_569160.1 CDS pli0003 NC_003383.1 820 2046 R pli0003; similar to transposase; hypothetical protein complement(820..2046) Listeria innocua Clip11262 3125734 NP_569161.1 CDS pli0004 NC_003383.1 2131 4401 R pli0004; similar to DNA methylase; hypothetical protein complement(2131..4401) Listeria innocua Clip11262 3125735 NP_569162.1 CDS pli0005 NC_003383.1 4405 4803 R pli0005; hypothetical protein complement(4405..4803) Listeria innocua Clip11262 3125736 NP_569163.1 CDS pli0006 NC_003383.1 4977 5312 D pli0006; hypothetical protein 4977..5312 Listeria innocua Clip11262 3125737 NP_569164.1 CDS pli0007 NC_003383.1 5350 5880 R pli0007; hypothetical protein complement(5350..5880) Listeria innocua Clip11262 3125738 NP_569165.1 CDS pli0008 NC_003383.1 5994 6758 R pli0008; similar to unknown protein; hypothetical protein complement(5994..6758) Listeria innocua Clip11262 3125739 NP_569166.1 CDS pli0009 NC_003383.1 7151 8491 R pli0009; similar to unknown protein; hypothetical protein complement(7151..8491) Listeria innocua Clip11262 3125740 NP_569167.1 CDS pli0010 NC_003383.1 8484 8924 R pli0010; hypothetical protein complement(8484..8924) Listeria innocua Clip11262 3125741 NP_569168.1 CDS pli0011 NC_003383.1 8936 9175 R pli0011; hypothetical gene; hypothetical protein complement(8936..9175) Listeria innocua Clip11262 3125742 NP_569169.1 CDS pli0012 NC_003383.1 9632 10312 D transposase 9632..10312 Listeria innocua Clip11262 3125743 NP_569170.1 CDS pli0013 NC_003383.1 10455 10976 R pli0013; similar to unknown protein; hypothetical protein complement(10455..10976) Listeria innocua Clip11262 3125744 NP_569171.1 CDS pli0014 NC_003383.1 10991 11566 R pli0014; similar to unknown protein; hypothetical protein complement(10991..11566) Listeria innocua Clip11262 3125712 NP_569172.1 CDS pli0015 NC_003383.1 11582 12565 R pli0015; similar to plasmid replication protein; hypothetical protein complement(11582..12565) Listeria innocua Clip11262 3125713 NP_569173.1 CDS pli0017 NC_003383.1 13316 13654 D pli0017; hypothetical protein 13316..13654 Listeria innocua Clip11262 3125715 NP_569174.1 CDS pli0020 NC_003383.1 14724 15206 R pli0020; similar to transposase; hypothetical protein complement(14724..15206) Listeria innocua Clip11262 3125774 NP_569175.1 CDS pli0021 NC_003383.1 15481 20190 R pli0021; similar to putative helicase; hypothetical protein complement(15481..20190) Listeria innocua Clip11262 3125775 NP_569176.1 CDS pli0022 NC_003383.1 20187 20732 R pli0022; similar to plasmid replication protein B; hypothetical protein complement(20187..20732) Listeria innocua Clip11262 3125776 NP_569177.1 CDS pli0023 NC_003383.1 20732 21892 R pli0023; similar to plasmid replication initiation protein; hypothetical protein complement(20732..21892) Listeria innocua Clip11262 3125777 NP_569178.1 CDS pli0024 NC_003383.1 22150 22830 R pli0024; similar to transposase; hypothetical protein complement(22150..22830) Listeria innocua Clip11262 3125778 NP_569179.1 CDS pli0025 NC_003383.1 23026 23319 R pli0025; similar to transposase; hypothetical protein complement(23026..23319) Listeria innocua Clip11262 3125779 NP_569180.1 CDS pli0026 NC_003383.1 23377 23652 D pli0026; similar to gram positive plasmid replication B; hypothetical protein 23377..23652 Listeria innocua Clip11262 3125780 NP_569181.1 CDS pli0027 NC_003383.1 23688 26693 D pli0027; similar to helicase; hypothetical protein 23688..26693 Listeria innocua Clip11262 3125781 NP_569182.1 CDS pli0028 NC_003383.1 26727 27407 R transposase complement(26727..27407) Listeria innocua Clip11262 3125782 NP_569183.1 CDS pli0029 NC_003383.1 27445 28512 R pli0029; similar to DNA methyltransferase; hypothetical protein complement(27445..28512) Listeria innocua Clip11262 3125716 NP_569184.1 CDS pli0030 NC_003383.1 28515 29072 R pli0030; hypothetical protein complement(28515..29072) Listeria innocua Clip11262 3125717 NP_569185.1 CDS pli0031 NC_003383.1 29073 29246 R pli0031; hypothetical protein complement(29073..29246) Listeria innocua Clip11262 3125718 NP_569186.1 CDS pli0032 NC_003383.1 29365 30045 D transposase 29365..30045 Listeria innocua Clip11262 3125719 NP_569187.1 CDS pli0034 NC_003383.1 30420 30713 D pli0034; similar to arsenical resistance operon repressor; hypothetical protein 30420..30713 Listeria innocua Clip11262 3125784 NP_569188.1 CDS pli0035 NC_003383.1 30715 31086 D pli0035; similar to arsenical resistance operon trans-acting ArsD; hypothetical protein 30715..31086 Listeria innocua Clip11262 3125785 NP_569189.1 CDS pli0036 NC_003383.1 31220 31585 D pli0036; similar to arsenical resistance operon repressor; hypothetical protein 31220..31585 Listeria innocua Clip11262 3125786 NP_569190.1 CDS pli0037 NC_003383.1 31621 33363 D pli0037; similar to arsenical pump-driving ATPase; hypothetical protein 31621..33363 Listeria innocua Clip11262 3125787 NP_569191.1 CDS pli0038 NC_003383.1 33450 34508 D pli0038; similar to possible arsenic resistance membrane protein ArsB; hypothetical protein 33450..34508 Listeria innocua Clip11262 3125720 NP_569192.1 CDS pli0039 NC_003383.1 34562 35608 D pli0039; similar to heavy metal membrane efflux protein; hypothetical protein 34562..35608 Listeria innocua Clip11262 3125721 NP_569193.1 CDS pli0040 NC_003383.1 35629 37302 D pli0040; similar to flavoprotein oxidoreductase; hypothetical protein 35629..37302 Listeria innocua Clip11262 3125722 NP_569194.1 CDS pli0041 NC_003383.1 37584 38246 D pli0041; similar to ABC transporter ATP-binding protein ; hypothetical start; hypothetical protein 37584..38246 Listeria innocua Clip11262 3125723 NP_569195.1 CDS pli0042 NC_003383.1 38284 38406 D pli0042; Similar to transposase, N-terminal part; hypothetical protein 38284..38406 Listeria innocua Clip11262 3125752 NP_569196.1 CDS pli0043 NC_003383.1 38440 39120 R transposase complement(38440..39120) Listeria innocua Clip11262 3125753 NP_569197.1 CDS pli0044 NC_003383.1 39312 40676 D pli0044; similar to NADH peroxidase; hypothetical protein 39312..40676 Listeria innocua Clip11262 3125754 NP_569198.1 CDS pli0045 NC_003383.1 40922 41791 R hypothetical protein complement(40922..41791) Listeria innocua Clip11262 3125755 NP_569199.1 CDS pli0046 NC_003383.1 42100 42471 D pli0046; hypothetical protein 42100..42471 Listeria innocua Clip11262 3125756 NP_569200.1 CDS pli0047 NC_003383.1 42662 43426 D pli0047; hypothetical protein 42662..43426 Listeria innocua Clip11262 3125757 NP_569201.1 CDS pli0048 NC_003383.1 43889 45772 D pli0048; similar to heavy metal-transporting ATPase; hypothetical protein 43889..45772 Listeria innocua Clip11262 3125758 NP_569202.1 CDS pli0049 NC_003383.1 45892 46572 R transposase complement(45892..46572) Listeria innocua Clip11262 3125724 NP_569203.1 CDS pli0050 NC_003383.1 47618 50284 D pli0050; similar to the two components sensor protein kdpD; hypothetical protein 47618..50284 Listeria innocua Clip11262 3125725 NP_569204.1 CDS pli0051 NC_003383.1 50277 50999 D pli0051; similar to the two components response regulator KdpE; hypothetical protein 50277..50999 Listeria innocua Clip11262 3125726 NP_569205.1 CDS pli0052 NC_003383.1 51307 53028 D pli0052; catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 51307..53028 Listeria innocua Clip11262 3125727 NP_569206.1 CDS pli0053 NC_003383.1 53042 55102 D pli0053; One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B 53042..55102 Listeria innocua Clip11262 3125759 NP_569207.1 CDS pli0054 NC_003383.1 55152 55478 D pli0054; hypothetical protein 55152..55478 Listeria innocua Clip11262 3125760 NP_569208.1 CDS pli0055 NC_003383.1 55501 56139 D pli0055; one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C 55501..56139 Listeria innocua Clip11262 3125761 NP_569209.1 CDS pli0056 NC_003383.1 56844 57395 R pli0056; similar to resolvase/integrase; hypothetical protein complement(56844..57395) Listeria innocua Clip11262 3125762 NP_569210.1 CDS pli0057 NC_003383.1 57626 58483 R pli0057; similar to DNA transposition protein; hypothetical protein complement(57626..58483) Listeria innocua Clip11262 3125763 NP_569211.1 CDS pli0058 NC_003383.1 58476 59912 R pli0058; similar to transposase; hypothetical protein complement(58476..59912) Listeria innocua Clip11262 3125764 NP_569212.1 CDS pli0059 NC_003383.1 60071 60670 D pli0059; similar to invertase; hypothetical protein 60071..60670 Listeria innocua Clip11262 3125765 NP_569213.1 CDS pli0060 NC_003383.1 60944 61303 D pli0060; similar to cadmium resistance accessory protein; hypothetical protein 60944..61303 Listeria innocua Clip11262 3125728 NP_569214.1 CDS pli0061 NC_003383.1 61300 63417 D pli0061; similar to cadmium-transporting ATPase; hypothetical protein 61300..63417 Listeria innocua Clip11262 3125729 NP_569215.1 CDS pli0062 NC_003383.1 64062 64505 R pli0062; similar to unknown protein; hypothetical protein complement(64062..64505) Listeria innocua Clip11262 3125730 NP_569216.1 CDS pli0063 NC_003383.1 64625 65305 D pli0063; similar to transposase; hypothetical protein 64625..65305 Listeria innocua Clip11262 3125731 NP_569217.1 CDS pli0064 NC_003383.1 65525 66430 D pli0064; similar to unknown protein; hypothetical protein 65525..66430 Listeria innocua Clip11262 3125766 NP_569218.1 CDS pli0065 NC_003383.1 66452 66904 D pli0065; hypothetical protein 66452..66904 Listeria innocua Clip11262 3125767 NP_569219.1 CDS pli0066 NC_003383.1 67066 67410 D pli0066; hypothetical protein 67066..67410 Listeria innocua Clip11262 3125768 NP_569220.1 CDS pli0067 NC_003383.1 67398 68678 D pli0067; similar to UV-damage repair protein; hypothetical protein 67398..68678 Listeria innocua Clip11262 3125769 NP_569221.1 CDS pli0068 NC_003383.1 69035 69367 R pli0068; similar to unknown protein; hypothetical protein complement(69035..69367) Listeria innocua Clip11262 3125770 NP_569222.1 CDS pli0069 NC_003383.1 69360 70241 R pli0069; similar to plasmid copy control protein repB; hypothetical protein complement(69360..70241) Listeria innocua Clip11262 3125771 NP_569223.1 CDS pli0070 NC_003383.1 70869 72518 D pli0070; similar to plasmid replication protein; hypothetical protein 70869..72518 Listeria innocua Clip11262 3125708 NP_569224.1 CDS pli0071 NC_003383.1 72838 73518 D pli0071; similar to transposase; hypothetical protein 72838..73518 Listeria innocua Clip11262 3125709 NP_569225.1 CDS pli0072 NC_003383.1 73532 74356 D pli0072; similar to transposase; hypothetical protein 73532..74356 Listeria innocua Clip11262 3125710 NP_569226.1 CDS pli0073 NC_003383.1 74919 75908 R pli0073; hypothetical protein complement(74919..75908) Listeria innocua Clip11262 3125711 NP_569227.1 CDS pli0074 NC_003383.1 75915 76175 R pli0074; hypothetical protein complement(75915..76175) Listeria innocua Clip11262 3125745 NP_569228.1 CDS pli0075 NC_003383.1 76285 76830 R pli0075; hypothetical protein complement(76285..76830) Listeria innocua Clip11262 3125746 NP_569229.1 CDS pli0076 NC_003383.1 77849 78658 R transposase complement(77849..78658) Listeria innocua Clip11262 3125747 NP_569230.1 CDS pli0077 NC_003383.1 78712 78993 R pli0077; similar to transposase N-terminal part; hypothetical protein complement(78712..78993) Listeria innocua Clip11262 3125748 NP_569231.1 CDS pli0079 NC_003383.1 80403 81557 D pli0079; similar to Na+/H+ antiporter; hypothetical protein 80403..81557 Listeria innocua Clip11262 3125750 NP_569232.1 CDS pli0080 NC_003383.1 81574 81867 D pli0080; hypothetical protein 81574..81867 Listeria innocua Clip11262 3125751 lint01 tRNA lint01 NC_003212.1 76030 76102 D tRNA-Lys 76030..76102 Listeria innocua Clip11262 3167704 lint02 tRNA lint02 NC_003212.1 265464 265536 D tRNA-Val 265464..265536 Listeria innocua Clip11262 3167640 lint03 tRNA lint03 NC_003212.1 265544 265619 D tRNA-Thr 265544..265619 Listeria innocua Clip11262 3167672 lint04 tRNA lint04 NC_003212.1 265660 265732 D tRNA-Lys 265660..265732 Listeria innocua Clip11262 3167639 lint05 tRNA lint05 NC_003212.1 265738 265819 D tRNA-Leu 265738..265819 Listeria innocua Clip11262 3167670 lint06 tRNA lint06 NC_003212.1 265831 265902 D tRNA-Gly 265831..265902 Listeria innocua Clip11262 3167673 lint07 tRNA lint07 NC_003212.1 265924 266009 D tRNA-Leu 265924..266009 Listeria innocua Clip11262 3167700 lint08 tRNA lint08 NC_003212.1 266022 266095 D tRNA-Arg 266022..266095 Listeria innocua Clip11262 3167701 lint09 tRNA lint09 NC_003212.1 266106 266179 D tRNA-Pro 266106..266179 Listeria innocua Clip11262 3167702 lint10 tRNA lint10 NC_003212.1 266199 266274 D tRNA-Ala 266199..266274 Listeria innocua Clip11262 3167656 lint11 tRNA lint11 NC_003212.1 670857 670946 R tRNA-Ser complement(670857..670946) Listeria innocua Clip11262 3167696 lint12 tRNA lint12 NC_003212.1 930794 930881 D tRNA-Ser 930794..930881 Listeria innocua Clip11262 3167679 lint13 tRNA lint13 NC_003212.1 933810 933881 D tRNA-Glu 933810..933881 Listeria innocua Clip11262 3167698 lint14 tRNA lint14 NC_003212.1 933908 933980 D tRNA-Asp 933908..933980 Listeria innocua Clip11262 3167680 lint15 tRNA lint15 NC_003212.1 963459 963529 D tRNA-Gly 963459..963529 Listeria innocua Clip11262 3167662 lint16 tRNA lint16 NC_003212.1 1217575 1217648 D tRNA-Arg 1217575..1217648 Listeria innocua Clip11262 3167699 lint17 tRNA lint17 NC_003212.1 1791508 1791579 R tRNA-Glu complement(1791508..1791579) Listeria innocua Clip11262 3167668 lint18 tRNA lint18 NC_003212.1 1791585 1791675 R tRNA-Ser complement(1791585..1791675) Listeria innocua Clip11262 3167657 lint19 tRNA lint19 NC_003212.1 1791712 1791784 R tRNA-Asn complement(1791712..1791784) Listeria innocua Clip11262 3167664 lint20 tRNA lint20 NC_003212.1 1791791 1791864 R tRNA-Ile complement(1791791..1791864) Listeria innocua Clip11262 3167654 lint21 tRNA lint21 NC_003212.1 1791891 1791961 R tRNA-Gly complement(1791891..1791961) Listeria innocua Clip11262 3167665 lint22 tRNA lint22 NC_003212.1 1791984 1792056 R tRNA-His complement(1791984..1792056) Listeria innocua Clip11262 3167663 lint23 tRNA lint23 NC_003212.1 1792083 1792155 R tRNA-Phe complement(1792083..1792155) Listeria innocua Clip11262 3167655 lint24 tRNA lint24 NC_003212.1 1792160 1792235 R tRNA-Asp complement(1792160..1792235) Listeria innocua Clip11262 3167667 lint25 tRNA lint25 NC_003212.1 1792240 1792313 R tRNA-Met complement(1792240..1792313) Listeria innocua Clip11262 3167658 lint26 tRNA lint26 NC_003212.1 1792356 1792445 R tRNA-Ser complement(1792356..1792445) Listeria innocua Clip11262 3167692 lint27 tRNA lint27 NC_003212.1 1792468 1792541 R tRNA-Met complement(1792468..1792541) Listeria innocua Clip11262 3167691 lint28 tRNA lint28 NC_003212.1 1792553 1792626 R tRNA-Met complement(1792553..1792626) Listeria innocua Clip11262 3167644 lint29 tRNA lint29 NC_003212.1 1792681 1792753 R tRNA-Ala complement(1792681..1792753) Listeria innocua Clip11262 3167642 lint30 tRNA lint30 NC_003212.1 1792773 1792846 R tRNA-Pro complement(1792773..1792846) Listeria innocua Clip11262 3167682 lint31 tRNA lint31 NC_003212.1 1792857 1792930 R tRNA-Arg complement(1792857..1792930) Listeria innocua Clip11262 3167669 lint32 tRNA lint32 NC_003212.1 1792940 1793025 R tRNA-Leu complement(1792940..1793025) Listeria innocua Clip11262 3167690 lint33 tRNA lint33 NC_003212.1 1793040 1793114 R tRNA-Gly complement(1793040..1793114) Listeria innocua Clip11262 3167671 lint34 tRNA lint34 NC_003212.1 1793130 1793211 R tRNA-Leu complement(1793130..1793211) Listeria innocua Clip11262 3167697 lint35 tRNA lint35 NC_003212.1 1793217 1793289 R tRNA-Lys complement(1793217..1793289) Listeria innocua Clip11262 3167641 lint36 tRNA lint36 NC_003212.1 1793330 1793405 R tRNA-Thr complement(1793330..1793405) Listeria innocua Clip11262 3167681 lint37 tRNA lint37 NC_003212.1 1793414 1793486 R tRNA-Val complement(1793414..1793486) Listeria innocua Clip11262 3167693 lint38 tRNA lint38 NC_003212.1 1831210 1831281 D tRNA-Arg 1831210..1831281 Listeria innocua Clip11262 3167694 lint39 tRNA lint39 NC_003212.1 2208754 2208837 D tRNA-Leu 2208754..2208837 Listeria innocua Clip11262 3167695 lint40 tRNA lint40 NC_003212.1 2260134 2260205 D tRNA-Glu 2260134..2260205 Listeria innocua Clip11262 3167678 lint41 tRNA lint41 NC_003212.1 2260360 2260433 D tRNA-Thr 2260360..2260433 Listeria innocua Clip11262 3167677 lint42 tRNA lint42 NC_003212.1 2260443 2260526 D tRNA-Tyr 2260443..2260526 Listeria innocua Clip11262 3167676 lint43 tRNA lint43 NC_003212.1 2260538 2260612 D tRNA-Gln 2260538..2260612 Listeria innocua Clip11262 3167675 lint44 tRNA lint44 NC_003212.1 2260619 2260691 D tRNA-Lys 2260619..2260691 Listeria innocua Clip11262 3167674 lint45 tRNA lint45 NC_003212.1 2486007 2486090 R tRNA-Leu complement(2486007..2486090) Listeria innocua Clip11262 3167652 lint46 tRNA lint46 NC_003212.1 2486136 2486209 R tRNA-Cys complement(2486136..2486209) Listeria innocua Clip11262 3167651 lint47 tRNA lint47 NC_003212.1 2486229 2486300 R tRNA-Gly complement(2486229..2486300) Listeria innocua Clip11262 3167650 lint48 tRNA lint48 NC_003212.1 2486306 2486377 R tRNA-Gln complement(2486306..2486377) Listeria innocua Clip11262 3167649 lint49 tRNA lint49 NC_003212.1 2486409 2486481 R tRNA-His complement(2486409..2486481) Listeria innocua Clip11262 3167648 lint50 tRNA lint50 NC_003212.1 2486496 2486569 R tRNA-Trp complement(2486496..2486569) Listeria innocua Clip11262 3167647 lint51 tRNA lint51 NC_003212.1 2486577 2486660 R tRNA-Tyr complement(2486577..2486660) Listeria innocua Clip11262 3167646 lint52 tRNA lint52 NC_003212.1 2486683 2486755 R tRNA-Phe complement(2486683..2486755) Listeria innocua Clip11262 3167659 lint53 tRNA lint53 NC_003212.1 2486760 2486835 R tRNA-Asp complement(2486760..2486835) Listeria innocua Clip11262 3167645 lint54 tRNA lint54 NC_003212.1 2486842 2486915 R tRNA-Met complement(2486842..2486915) Listeria innocua Clip11262 3167689 lint55 tRNA lint55 NC_003212.1 2486937 2487012 R tRNA-Val complement(2486937..2487012) Listeria innocua Clip11262 3167688 lint56 tRNA lint56 NC_003212.1 2487069 2487140 R tRNA-Glu complement(2487069..2487140) Listeria innocua Clip11262 3167687 lint57 tRNA lint57 NC_003212.1 2487178 2487266 R tRNA-Ser complement(2487178..2487266) Listeria innocua Clip11262 3167686 lint58 tRNA lint58 NC_003212.1 2487273 2487348 R tRNA-Asn complement(2487273..2487348) Listeria innocua Clip11262 3167685 lint59 tRNA lint59 NC_003212.1 2490656 2490731 R tRNA-Ala complement(2490656..2490731) Listeria innocua Clip11262 3167684 lint60 tRNA lint60 NC_003212.1 2490778 2490851 R tRNA-Ile complement(2490778..2490851) Listeria innocua Clip11262 3167683 lint61 tRNA lint61 NC_003212.1 2625909 2625980 R tRNA-Arg complement(2625909..2625980) Listeria innocua Clip11262 3167653 lint62 tRNA lint62 NC_003212.1 2758171 2758243 R tRNA-Thr complement(2758171..2758243) Listeria innocua Clip11262 3167643 lint63 tRNA lint63 NC_003212.1 2758268 2758343 R tRNA-Asn complement(2758268..2758343) Listeria innocua Clip11262 3167660 lint64 tRNA lint64 NC_003212.1 2761651 2761726 R tRNA-Ala complement(2761651..2761726) Listeria innocua Clip11262 3167661 lint65 tRNA lint65 NC_003212.1 2761773 2761846 R tRNA-Ile complement(2761773..2761846) Listeria innocua Clip11262 3167666 lint66 tRNA lint66 NC_003212.1 2996990 2997062 D tRNA-Val 2996990..2997062 Listeria innocua Clip11262 3167703 linr01 rRNA linr01 NC_003212.1 260527 262081 D 16S ribosomal RNA 260527..262081 Listeria innocua Clip11262 1128669 linr02 rRNA linr02 NC_003212.1 262327 265257 D 23S ribosomal RNA 262327..265257 Listeria innocua Clip11262 1128670 linr03 rRNA linr03 NC_003212.1 265338 265447 D 5S ribosomal RNA 265338..265447 Listeria innocua Clip11262 1128671 linr04 rRNA linr04 NC_003212.1 266549 268103 D 16S ribosomal RNA 266549..268103 Listeria innocua Clip11262 1128672 linr05 rRNA linr05 NC_003212.1 268349 271279 D 23S ribosomal RNA 268349..271279 Listeria innocua Clip11262 1128673 linr06 rRNA linr06 NC_003212.1 271360 271469 D 5S ribosomal RNA 271360..271469 Listeria innocua Clip11262 1128674 linr07 rRNA linr07 NC_003212.1 1793503 1793612 R 5S ribosomal RNA complement(1793503..1793612) Listeria innocua Clip11262 1130460 linr08 rRNA linr08 NC_003212.1 1793693 1796623 R 23S ribosomal RNA complement(1793693..1796623) Listeria innocua Clip11262 1130461 linr09 rRNA linr09 NC_003212.1 1796869 1798423 R 16S ribosomal RNA complement(1796869..1798423) Listeria innocua Clip11262 1130462 linr10 rRNA linr10 NC_003212.1 1903332 1903441 R 5S ribosomal RNA complement(1903332..1903441) Listeria innocua Clip11262 1130574 linr11 rRNA linr11 NC_003212.1 1903522 1906452 R 23S ribosomal RNA complement(1903522..1906452) Listeria innocua Clip11262 1130575 linr12 rRNA linr12 NC_003212.1 1906698 1908252 R 16S ribosomal RNA complement(1906698..1908252) Listeria innocua Clip11262 1130576 linr13 rRNA linr13 NC_003212.1 2487363 2487472 R 5S ribosomal RNA complement(2487363..2487472) Listeria innocua Clip11262 1131254 linr14 rRNA linr14 NC_003212.1 2487553 2490423 R 23S ribosomal RNA complement(2487553..2490423) Listeria innocua Clip11262 1131255 linr15 rRNA linr15 NC_003212.1 2490979 2492533 R 16S ribosomal RNA complement(2490979..2492533) Listeria innocua Clip11262 1131256 linr16 rRNA linr16 NC_003212.1 2758358 2758467 R 5S ribosomal RNA complement(2758358..2758467) Listeria innocua Clip11262 1131587 linr17 rRNA linr17 NC_003212.1 2758599 2761478 R 23S ribosomal RNA complement(2758599..2761478) Listeria innocua Clip11262 1131588 linr18 rRNA linr18 NC_003212.1 2761974 2763528 R 16S ribosomal RNA complement(2761974..2763528) Listeria innocua Clip11262 1131589