-- dump date 20140619_133926 -- class Genbank::CDS -- table cds_note -- id note YP_012614.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_012615.1 binds the polymerase to DNA and acts as a sliding clamp YP_012616.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_012617.1 identified by similarity to OMNI:NTL01LI0004 YP_012618.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_012619.1 identified by similarity to SP:P05652; match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059 YP_012620.1 identified by similarity to SP:P05653; match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063; match to protein family HMM TIGR01967 YP_012621.1 identified by similarity to SP:O66043; match to protein family HMM PF00614 YP_012622.1 identified by similarity to SP:P37354; match to protein family HMM PF00583 YP_012624.1 identified by similarity to GP:9937379; match to protein family HMM PF00288; match to protein family HMM TIGR00549 YP_012625.1 identified by match to protein family HMM PF00288; match to protein family HMM TIGR01240 YP_012626.1 identified by match to protein family HMM PF00288; match to protein family HMM TIGR01220 YP_012628.1 identified by similarity to SP:P34957; match to protein family HMM PF02790; match to protein family HMM TIGR01432 YP_012629.1 identified by similarity to SP:P34956; match to protein family HMM PF00115 YP_012630.1 identified by similarity to SP:P34958; match to protein family HMM PF00510 YP_012631.1 identified by similarity to SP:P34959; match to protein family HMM PF03626 YP_012632.1 identified by similarity to GP:4584121 YP_012633.1 identified by match to protein family HMM PF00232 YP_012634.1 identified by similarity to OMNI:NTL01LI0018 YP_012635.1 identified by match to protein family HMM PF00392 YP_012637.1 identified by match to protein family HMM PF03830 YP_012638.1 identified by similarity to SP:P08187; match to protein family HMM PF03609 YP_012639.1 identified by similarity to SP:P08188; match to protein family HMM PF03613 YP_012640.1 identified by similarity to GP:8894743 YP_012641.1 identified by match to protein family HMM PF03932 YP_012642.1 identified by similarity to SP:P08722; match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830 YP_012643.1 identified by similarity to OMNI:NTL01LI0027; match to protein family HMM PF02016 YP_012645.1 identified by similarity to SP:P37493 YP_012647.1 identified by similarity to SP:P37491 YP_012648.1 identified by similarity to SP:P37490 YP_012649.1 identified by similarity to OMNI:NTL01LI0028 YP_012650.1 identified by similarity to GP:16412450; match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_012651.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_012652.1 identified by match to protein family HMM PF00480 YP_012654.1 identified by similarity to SP:P46317; match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_012655.1 identified by similarity to OMNI:NTL01LI0034; match to protein family HMM PF01380 YP_012656.1 catalyzes the formation of putrescine from carbamoyl-putrescine during agmatine degradation YP_012657.1 identified by match to protein family HMM PF00324 YP_012658.1 catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis YP_012659.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_012660.1 catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis YP_012662.1 identified by similarity to SP:P09548; match to protein family HMM PF00597 YP_012663.1 catalyzes the degradation of arginine to citruline and ammonia YP_012664.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_012665.1 identified by similarity to SP:P37455; match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_012666.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_012668.1 essential for production of a quorum sensing autoinducing peptide YP_012669.1 identified by similarity to OMNI:NTL01LI0042 YP_012670.1 identified by similarity to GP:1916243; match to protein family HMM PF02518 YP_012671.1 identified by similarity to SP:P13131; match to protein family HMM PF00072; match to protein family HMM PF04397 YP_012672.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_012673.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_012674.1 unwinds double stranded DNA YP_012676.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_012678.1 identified by similarity to OMNI:NTL01LI0049; match to protein family HMM PF06013 YP_012679.1 identified by match to protein family HMM TIGR01612 YP_012680.1 identified by similarity to OMNI:NTL01LI0051 YP_012681.1 identified by similarity to OMNI:NTL01LI0052 YP_012682.1 identified by similarity to OMNI:NTL01LI0053 YP_012683.1 identified by match to protein family HMM PF01580; match to protein family HMM TIGR01612 YP_012685.1 identified by similarity to OMNI:NTL01LI0056 YP_012686.1 identified by similarity to OMNI:NTL01LI0057 YP_012687.1 identified by similarity to OMNI:NTL01LI0058 YP_012688.1 identified by similarity to OMNI:NTL01LI0059 YP_012689.1 identified by similarity to OMNI:NTL01LI0063 YP_012690.1 identified by similarity to OMNI:NTL01LI0064 YP_012692.1 identified by similarity to GP:19715005 YP_012693.1 identified by similarity to OMNI:NTL01LI0059 YP_012694.1 identified by similarity to SP:P40737 YP_012703.1 identified by similarity to SP:P11435 YP_012704.1 identified by similarity to SP:P06134; match to protein family HMM PF01035; match to protein family HMM PF02805; match to protein family HMM TIGR00589 YP_012705.1 identified by match to protein family HMM PF00805 YP_012706.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_012707.1 identified by similarity to GP:16412606 YP_012711.1 identified by match to protein family HMM PF00376 YP_012712.1 identified by match to protein family HMM PF00248 YP_012713.1 identified by similarity to OMNI:NTL01LI0129 YP_012714.1 identified by similarity to GP:16412551; match to protein family HMM TIGR01612 YP_012715.1 identified by similarity to OMNI:NTL01LI0131 YP_012716.1 identified by similarity to SP:Q05366; match to protein family HMM PF00137 YP_012718.1 produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit YP_012719.1 identified by match to protein family HMM PF00231 YP_012720.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit YP_012721.1 identified by match to protein family HMM PF02823 YP_012722.1 identified by similarity to OMNI:NTL01LI0138 YP_012723.1 identified by similarity to OMNI:NTL01LI0140 YP_012724.1 identified by similarity to GP:5669855; match to protein family HMM PF03610; match to protein family HMM PF03830; match to protein family HMM TIGR00824 YP_012725.1 identified by similarity to SP:P08187; match to protein family HMM PF03609 YP_012726.1 identified by similarity to SP:P08188; match to protein family HMM PF03613; match to protein family HMM TIGR00828 YP_012727.1 identified by similarity to GP:16412565; match to protein family HMM PF06115 YP_012728.1 identified by similarity to OMNI:NTL01LI0145 YP_012730.1 identified by match to protein family HMM PF01022 YP_012731.1 identified by match to protein family HMM PF02619; match to protein family HMM PF03992 YP_012732.1 identified by match to protein family HMM PF00881 YP_012733.1 identified by similarity to OMNI:NTL01LI0150 YP_012734.1 identified by similarity to GP:2696017; match to protein family HMM PF00041; match to protein family HMM PF00704; match to protein family HMM PF02839 YP_012735.1 identified by similarity to OMNI:NTL01LI0765; match to protein family HMM PF00480 YP_012736.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_012737.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_012738.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_012739.1 identified by similarity to GP:2853612 YP_012740.1 identified by match to protein family HMM PF00563 YP_012741.1 identified by similarity to OMNI:NTL01LI0157 YP_012742.1 identified by match to protein family HMM PF06114 YP_012743.1 identified by match to protein family HMM PF01381 YP_012745.1 identified by match to protein family HMM TIGR01637 YP_012746.1 identified by similarity to OMNI:NTL01LM0117 YP_012747.1 identified by similarity to OMNI:NTL01LM0118 YP_012748.1 identified by similarity to OMNI:NTL01LI0164 YP_012749.1 identified by similarity to OMNI:NTL01LI0165 YP_012750.1 identified by similarity to OMNI:NTL01LI0166 YP_012751.1 identified by similarity to OMNI:NTL01LI0167 YP_012752.1 identified by match to protein family HMM TIGR01665 YP_012753.1 identified by similarity to OMNI:NTL01LI0169 YP_012754.1 identified by similarity to OMNI:NTL01LI0170 YP_012755.1 identified by similarity to OMNI:NTL01LI0171 YP_012756.1 identified by similarity to OMNI:NTL01LI0172 YP_012757.1 identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593 YP_012758.1 identified by similarity to OMNI:NTL01LI0174; match to protein family HMM PF01520 YP_012759.1 identified by match to protein family HMM PF00149; match to protein family HMM PF00746; match to protein family HMM PF02872; match to protein family HMM TIGR01167 YP_012760.1 identified by match to protein family HMM PF00563 YP_012761.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_012763.1 identified by match to protein family HMM PF00583 YP_012764.1 identified by similarity to SP:P42061; match to protein family HMM PF00496 YP_012765.1 identified by similarity to SP:P42062; match to protein family HMM PF00528 YP_012766.1 identified by similarity to SP:P42063; match to protein family HMM PF00528 YP_012767.1 identified by similarity to OMNI:NTL01LI0183 YP_012768.1 identified by similarity to OMNI:NTL01LI0184 YP_012769.1 identified by similarity to GP:19712958 YP_012772.1 identified by similarity to GP:15622581 YP_012777.1 identified by match to protein family HMM PF00496 YP_012778.1 identified by similarity to SP:O05703; match to protein family HMM PF01297 YP_012779.1 identified by similarity to SP:Q9XDA6; match to protein family HMM PF00005 YP_012780.1 identified by similarity to SP:P39832; match to protein family HMM PF00950 YP_012783.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_012784.1 identified by match to protein family HMM PF05737; match to protein family HMM PF05738; match to protein family HMM TIGR01167 YP_012785.1 identified by match to protein family HMM PF05737; match to protein family HMM PF05738 YP_012786.1 identified by match to protein family HMM PF01740 YP_012787.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_012788.1 identified by similarity to OMNI:NTL01LI0204; match to protein family HMM PF04468 YP_012789.1 in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA YP_012790.1 identified by similarity to SP:P37543 YP_012791.1 identified by similarity to OMNI:EF2693; match to protein family HMM PF01541 YP_012792.1 identified by similarity to GP:16412629; match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_012793.1 identified by similarity to SP:P08874; match to protein family HMM PF04014; match to protein family HMM TIGR01439 YP_012794.1 identified by similarity to GP:2226001 YP_012795.1 identified by similarity to OMNI:NTL01LI0211 YP_012796.1 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167 YP_012797.1 identified by similarity to GP:2226001 YP_012798.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_012799.1 identified by similarity to SP:P16557; match to protein family HMM PF00480 YP_012800.1 identified by match to protein family HMM PF00528 YP_012801.1 identified by match to protein family HMM PF00528 YP_012802.1 identified by match to protein family HMM PF01547 YP_012803.1 identified by match to protein family HMM PF01055 YP_012804.1 identified by similarity to SP:Q9F234; match to protein family HMM PF01055 YP_012805.1 identified by similarity to SP:P21332; match to protein family HMM PF00128 YP_012806.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_012807.1 identified by similarity to SP:P37546; match to protein family HMM PF03990 YP_012808.1 identified by similarity to OMNI:NTL01LI0224; match to protein family HMM PF01751; match to protein family HMM TIGR00334 YP_012809.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_012810.1 identified by similarity to SP:P37466; match to protein family HMM PF06257 YP_012811.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_012812.1 identified by similarity to OMNI:VC1285; match to protein family HMM PF04794 YP_012813.1 identified by similarity to SP:P37551; match to protein family HMM PF00156; match to protein family HMM TIGR01743 YP_012814.1 identified by similarity to OMNI:NTL01LI0230 YP_012815.1 identified by match to protein family HMM PF00005 YP_012816.1 identified by match to protein family HMM PF02687 YP_012817.1 stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus YP_012818.1 stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus YP_012819.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_012820.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_012821.1 identified by similarity to SP:P22262 YP_012822.1 identified by similarity to GP:887021; similarity to SP:P34024; match to protein family HMM PF00388 YP_012823.1 identified by similarity to SP:P13128; match to protein family HMM PF01289 YP_012824.1 identified by similarity to SP:P34025; match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413 YP_012825.1 identified by similarity to SP:P33379; match to protein family HMM PF05058 YP_012826.1 identified by similarity to SP:P09598; match to protein family HMM PF00882 YP_012827.1 identified by similarity to GP:18073184 YP_012829.1 identified by similarity to SP:P33382; match to protein family HMM PF01906 YP_012830.1 identified by similarity to GP:18073204 YP_012831.1 Converts (S)-lactate and NAD(+) to pyruvate and NADH YP_012832.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_012833.1 identified by match to protein family HMM PF00583 YP_012834.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_012835.1 identified by similarity to SP:P37474; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM TIGR00580; match to protein family HMM TIGR01612 YP_012836.1 identified by match to protein family HMM PF01943 YP_012837.1 identified by similarity to SP:P37557; match to protein family HMM PF01479 YP_012838.1 identified by similarity to SP:P37471; match to protein family HMM PF04977 YP_012839.1 identified by match to protein family HMM PF00575 YP_012840.1 identified by similarity to GP:467456; match to protein family HMM PF00156; match to protein family HMM PF01171; match to protein family HMM TIGR01203 YP_012841.1 identified by similarity to SP:P37476; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM TIGR01241 YP_012842.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_012843.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_012844.1 identified by similarity to SP:P37887; match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_012846.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_012847.1 identified by match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526 YP_012848.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_012849.2 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_012850.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_012851.1 identified by similarity to SP:P37568; match to protein family HMM PF05848 YP_012852.1 identified by match to protein family HMM PF02151 YP_012853.1 identified by similarity to SP:P37570; match to protein family HMM PF00217 YP_012854.1 identified by similarity to GP:1314297; match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861 YP_012855.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_012856.1 identified by match to protein family HMM PF01850; match to protein family HMM PF01938 YP_012857.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_012858.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_012859.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_012860.1 identified by similarity to SP:Q06750; match to protein family HMM PF00132; match to protein family HMM TIGR01172 YP_012861.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_012862.1 identified by similarity to OMNI:NTL01BS00095; match to protein family HMM PF05948 YP_012863.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00186 YP_012864.1 identified by match to protein family HMM PF05991 YP_012865.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_012866.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif YP_012867.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_012868.1 Modulates Rho-dependent transcription termination YP_012869.1 identified by similarity to OMNI:NTL01LI0277 YP_012870.1 binds directly to 23S ribosomal RNA YP_012871.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_012872.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_012873.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_012874.1 identified by similarity to GP:16412713; match to protein family HMM PF05175 YP_012875.1 identified by similarity to GP:4678913; match to protein family HMM PF01139 YP_012876.1 identified by similarity to SP:P37947; match to protein family HMM PF00532 YP_012877.1 identified by similarity to SP:P29850; match to protein family HMM PF01547 YP_012878.1 identified by similarity to SP:Q04698; match to protein family HMM PF00528 YP_012879.1 identified by similarity to SP:Q04699; match to protein family HMM PF00528 YP_012880.1 identified by similarity to SP:P21332; match to protein family HMM PF00128 YP_012881.1 identified by similarity to SP:P10249; match to protein family HMM PF00128 YP_012884.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_012885.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_012887.1 identified by match to protein family HMM PF00232 YP_012889.1 identified by similarity to SP:P15361; match to protein family HMM PF00005 YP_012890.1 identified by match to protein family HMM PF00005 YP_012891.1 identified by similarity to GP:2347104; match to protein family HMM PF00560 YP_012892.1 identified by similarity to GP:2347105; match to protein family HMM PF00560 YP_012893.1 identified by similarity to GP:2347106; match to protein family HMM PF00560; match to protein family HMM TIGR01167 YP_012894.2 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_012895.1 identified by match to protein family HMM PF01047 YP_012896.1 identified by match to protein family HMM PF00903 YP_012897.1 identified by match to protein family HMM PF00300 YP_012898.1 identified by similarity to SP:P37315; match to protein family HMM PF00528 YP_012899.1 identified by match to protein family HMM PF00560 YP_012900.1 identified by similarity to OMNI:NTL01LI0294 YP_012901.1 identified by match to protein family HMM PF00232 YP_012902.1 identified by similarity to OMNI:NTL01LI0194; match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_012903.1 identified by match to protein family HMM PF00583 YP_012904.1 identified by similarity to OMNI:NTL01LI0298 YP_012905.1 identified by similarity to SP:P39695; match to protein family HMM PF00753 YP_012906.1 identified by similarity to GP:16412731; match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_012907.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_012908.1 identified by similarity to SP:Q00752; match to protein family HMM PF00005; match to protein family HMM PF03459 YP_012909.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_012910.1 identified by similarity to GP:4098082 YP_012911.1 identified by similarity to OMNI:NTL01LI0307 YP_012912.1 identified by match to protein family HMM PF00795 YP_012913.1 identified by match to protein family HMM PF00528 YP_012914.1 identified by match to protein family HMM PF00005 YP_012915.1 identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363 YP_012916.1 produces methionine from 2-keto-4-methylthiobutyrate and glutamine in vitro; mutations do not affect methionine salvage in vivo however YP_012917.1 identified by similarity to SP:P13792; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_012918.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_012919.1 identified by similarity to OMNI:NTL01SA0021 YP_012920.1 identified by similarity to OMNI:NTL01BH4030 YP_012921.1 identified by match to protein family HMM PF00753 YP_012922.1 identified by similarity to SP:Q9LA06; match to protein family HMM PF00089; match to protein family HMM PF00595 YP_012924.1 SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_012925.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_012926.1 identified by match to protein family HMM PF00881 YP_012927.1 identified by similarity to OMNI:NTL01LI0322 YP_012928.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874 YP_012929.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_012930.1 identified by match to protein family HMM PF02302 YP_012931.1 identified by match to protein family HMM PF00232 YP_012932.1 identified by similarity to SP:P17335; match to protein family HMM PF02255 YP_012934.1 identified by similarity to SP:P16667; match to protein family HMM PF02976 YP_012935.1 identified by match to protein family HMM PF01381 YP_012936.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675 YP_012939.1 identified by similarity to SP:P75823 YP_012940.1 identified by match to protein family HMM PF01435 YP_012941.1 identified by similarity to OMNI:NTL01LI0337; match to protein family HMM PF04794 YP_012942.1 identified by match to protein family HMM PF03070 YP_012943.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP YP_012944.1 identified by match to protein family HMM TIGR00097 YP_012945.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate YP_012946.1 identified by similarity to SP:P40740; match to protein family HMM PF00232 YP_012947.1 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167 YP_012948.1 identified by similarity to GP:16412775 YP_012949.1 identified by similarity to OMNI:NTL01LI0345 YP_012950.1 identified by match to protein family HMM PF03372 YP_012952.1 identified by match to protein family HMM PF01381; match to protein family HMM TIGR01716 YP_012953.1 identified by match to protein family HMM PF01381; match to protein family HMM TIGR01716 YP_012954.1 identified by similarity to OMNI:NTL01LM2386 YP_012955.1 identified by similarity to GP:16412782 YP_012956.1 identified by match to protein family HMM PF00560; match to protein family HMM PF00746; match to protein family HMM TIGR01167 YP_012958.1 identified by match to protein family HMM PF00560; match to protein family HMM TIGR01167; match to protein family HMM TIGR01612 YP_012959.1 identified by match to protein family HMM PF00560; match to protein family HMM TIGR01167; match to protein family HMM TIGR01612 YP_012961.1 identified by similarity to OMNI:NTL01LI0353 YP_012962.1 identified by similarity to OMNI:NTL01LI0354 YP_012964.1 identified by similarity to OMNI:NTL01PM0501 YP_012966.1 identified by similarity to OMNI:NTL01NM00296 YP_012970.1 identified by similarity to OMNI:EFA0076 YP_012971.1 identified by match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232 YP_012972.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_012973.1 identified by match to protein family HMM PF00106 YP_012974.1 identified by similarity to SP:P37351; match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120 YP_012975.1 identified by match to protein family HMM PF00121 YP_012976.1 identified by similarity to GP:15082276; match to protein family HMM PF02734 YP_012977.1 identified by similarity to GP:15082277; match to protein family HMM PF02733 YP_012978.1 identified by similarity to OMNI:NTL01LI0365 YP_012979.1 identified by similarity to OMNI:NTL01LI0366 YP_012980.1 identified by match to protein family HMM PF03610 YP_012981.1 identified by match to protein family HMM PF00455 YP_012982.1 identified by match to protein family HMM PF00583 YP_012983.1 identified by similarity to GP:2347104; match to protein family HMM PF00560 YP_012984.1 identified by similarity to GP:12723568; match to protein family HMM PF00501 YP_012985.1 Reduces fumarate to succinate in anaerobic bacterial respiration YP_012986.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_012987.1 identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167 YP_012988.1 identified by match to protein family HMM PF00455 YP_012990.1 identified by match to protein family HMM PF03575 YP_012991.1 identified by similarity to OMNI:NTL01LI0381 YP_012992.1 identified by match to protein family HMM PF00293 YP_012993.1 identified by similarity to OMNI:NTL01LI0386; match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_012994.1 identified by match to protein family HMM PF03831; match to protein family HMM TIGR00686 YP_012995.1 identified by match to protein family HMM PF00392 YP_012996.1 identified by match to protein family HMM PF00232 YP_012997.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_012998.1 identified by similarity to SP:P46318; match to protein family HMM PF02302 YP_012999.1 identified by similarity to OMNI:NTL01LI0392 YP_013000.1 identified by similarity to OMNI:NTL01LI0393 YP_013001.1 identified by similarity to OMNI:NTL01LI0394 YP_013002.1 identified by match to protein family HMM PF00455 YP_013003.1 identified by similarity to SP:P42412; match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_013004.1 identified by similarity to SP:P42413 YP_013005.1 identified by similarity to SP:P42414; match to protein family HMM PF00294 YP_013006.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_013007.1 identified by similarity to OMNI:NTL01LI0403 YP_013008.1 identified by similarity to OMNI:NTL01LI0404 YP_013010.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_013011.1 identified by similarity to OMNI:NTL01LI0407 YP_013012.1 identified by similarity to OMNI:NTL01SA1454 YP_013013.1 identified by similarity to GP:16412840 YP_013014.1 identified by match to protein family HMM PF00877 YP_013015.1 identified by match to protein family HMM PF00583 YP_013016.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_013021.1 identified by match to protein family HMM TIGR01167 YP_013022.1 identified by match to protein family HMM PF00392 YP_013025.1 identified by match to protein family HMM PF02687 YP_013027.1 identified by match to protein family HMM PF05146 YP_013028.1 identified by match to protein family HMM PF01074 YP_013029.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF02302 YP_013030.1 identified by similarity to OMNI:NTL01LI0424 YP_013032.1 identified by match to protein family HMM PF01384 YP_013033.1 identified by match to protein family HMM PF00903 YP_013034.1 identified by similarity to OMNI:NTL01LI0428 YP_013035.1 identified by similarity to OMNI:NTL01LI0429 YP_013036.1 identified by similarity to GP:2347102; match to protein family HMM PF00560; match to protein family HMM TIGR01167 YP_013037.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_013038.1 identified by similarity to OMNI:NTL01LI0431 YP_013039.1 identified by similarity to OMNI:NTL01LI0432 YP_013040.1 identified by match to protein family HMM PF02535 YP_013041.1 identified by similarity to OMNI:NTL02SP1332; match to protein family HMM PF01522 YP_013042.1 identified by match to protein family HMM PF01381 YP_013043.1 identified by similarity to OMNI:NTL01LI0436 YP_013044.1 identified by similarity to OMNI:NTL01LI0437 YP_013045.1 identified by similarity to OMNI:NTL01LL0877 YP_013046.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_013047.1 identified by similarity to GP:2226001 YP_013048.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF02302 YP_013049.1 identified by match to protein family HMM PF00359; match to protein family HMM TIGR00848 YP_013050.1 identified by match to protein family HMM PF02379; match to protein family HMM TIGR00829 YP_013051.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR01427 YP_013052.1 identified by match to protein family HMM PF01074 YP_013053.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_013054.1 identified by similarity to SP:Q09707; match to protein family HMM PF00132 YP_013055.1 identified by match to protein family HMM PF00106 YP_013056.1 identified by similarity to OMNI:NTL01LI0450 YP_013057.1 identified by similarity to SP:Q07833; match to protein family HMM PF05593; match to protein family HMM TIGR01612; match to protein family HMM TIGR01643 YP_013061.1 identified by similarity to GP:19915967 YP_013078.1 identified by similarity to SP:P25146; match to protein family HMM PF00560; match to protein family HMM PF00746; match to protein family HMM TIGR01167 YP_013080.1 identified by similarity to SP:P39315 YP_013082.1 identified by similarity to OMNI:NTL01LI0457; match to protein family HMM PF00668 YP_013084.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF05223 YP_013085.1 identified by similarity to OMNI:NTL01LI0459 YP_013086.1 identified by similarity to SP:Q02115; match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_013087.1 identified by similarity to GP:5578868 YP_013088.1 identified by similarity to OMNI:NTL01LI0463 YP_013089.1 identified by similarity to OMNI:NTL01LI0464 YP_013090.1 identified by similarity to OMNI:NTL01LI0465 YP_013091.1 identified by match to protein family HMM PF01841 YP_013092.1 identified by similarity to OMNI:NTL01LI0467; match to protein family HMM PF01882 YP_013093.1 identified by match to protein family HMM PF01078 YP_013094.1 identified by similarity to GP:16412913 YP_013095.1 identified by match to protein family HMM PF02133 YP_013096.1 identified by similarity to OMNI:NTL01LI0471; match to protein family HMM PF06032 YP_013097.1 identified by match to protein family HMM PF01968; match to protein family HMM PF05378 YP_013100.1 identified by similarity to OMNI:NTL01LI0798 YP_013104.1 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167 YP_013105.1 identified by similarity to OMNI:NTL01LL0091 YP_013109.1 identified by similarity to OMNI:NTL01LI1685 YP_013110.1 identified by similarity to OMNI:NTL01BS00578; match to protein family HMM PF01966 YP_013111.1 identified by similarity to OMNI:NTL01LI0472 YP_013112.1 identified by similarity to OMNI:NTL01LI0477 YP_013113.1 identified by similarity to OMNI:NTL01LI0478 YP_013114.1 in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever YP_013115.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_013116.1 identified by similarity to OMNI:NTL01LI0481 YP_013117.1 iron regulated; catalyzes the release of heme from hemoglobin allowing bacterial pathogens to use the host heme as an iron source YP_013118.1 identified by similarity to GP:16412606 YP_013120.1 identified by similarity to OMNI:NTL01LM0480; match to protein family HMM PF00881 YP_013121.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_013122.1 identified by match to protein family HMM PF00293 YP_013123.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_013124.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00724 YP_013125.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_013126.1 catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis YP_013127.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_013128.1 identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976 YP_013129.1 identified by match to protein family HMM PF00657 YP_013130.1 identified by match to protein family HMM PF00892 YP_013131.1 identified by similarity to OMNI:SP1473; match to protein family HMM PF05979 YP_013132.1 identified by similarity to SP:P37351; match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120 YP_013133.1 identified by match to protein family HMM PF00834 YP_013134.1 identified by match to protein family HMM PF00923 YP_013135.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874 YP_013136.1 identified by similarity to GP:16412942; match to protein family HMM PF01380 YP_013137.1 identified by match to protein family HMM PF00359 YP_013138.1 identified by similarity to OMNI:NTL01LI0500 YP_013139.1 identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163 YP_013140.1 identified by match to protein family HMM PF00107 YP_013141.1 identified by similarity to SP:P37188; match to protein family HMM PF02302 YP_013142.1 identified by similarity to SP:P37189; match to protein family HMM PF03611 YP_013143.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01251 YP_013144.1 identified by similarity to OMNI:NTL01LI0506 YP_013145.1 identified by match to protein family HMM PF00117 YP_013146.1 identified by similarity to OMNI:NTL01LI0508 YP_013147.1 identified by match to protein family HMM PF01047 YP_013148.1 identified by match to protein family HMM PF00560; match to protein family HMM PF00746; match to protein family HMM TIGR01167 YP_013149.1 identified by match to protein family HMM PF00582 YP_013150.1 identified by similarity to OMNI:NTL01BS03583 YP_013151.1 identified by match to protein family HMM PF00300 YP_013153.1 identified by similarity to SP:O35018; match to protein family HMM TIGR00711 YP_013154.1 identified by similarity to OMNI:NTL01LI0516 YP_013155.1 identified by match to protein family HMM PF02056 YP_013156.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_013157.1 identified by similarity to OMNI:NTL01LI0524 YP_013158.1 identified by match to protein family HMM PF00916; match to protein family HMM PF01740 YP_013160.1 identified by similarity to SP:P32184; match to protein family HMM PF00376 YP_013162.1 identified by similarity to OMNI:NTL01LI0528 YP_013163.1 identified by match to protein family HMM PF00535 YP_013164.1 identified by similarity to OMNI:NTL01LI0530 YP_013165.1 identified by similarity to OMNI:NTL01LI0531 YP_013166.1 identified by similarity to OMNI:NTL01LI0532 YP_013167.1 ACT domain-containing protein YP_013168.1 identified by match to protein family HMM PF05167 YP_013169.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_013170.1 identified by match to protein family HMM PF02056 YP_013171.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_013172.1 identified by similarity to SP:P80092; match to protein family HMM PF01546; match to protein family HMM TIGR01891 YP_013173.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources YP_013174.1 identified by similarity to OMNI:NTL01BS01695; match to protein family HMM PF00144 YP_013175.1 identified by match to protein family HMM PF01497 YP_013176.1 identified by similarity to SP:P05706; match to protein family HMM PF03829 YP_013177.1 identified by similarity to GP:4928286; match to protein family HMM PF03612 YP_013178.1 identified by similarity to SP:P56579; match to protein family HMM PF03608 YP_013179.1 identified by similarity to OMNI:NTL01LI0545 YP_013180.1 identified by similarity to OMNI:NTL01LI0546 YP_013181.1 identified by similarity to SP:P39140; match to protein family HMM PF04198 YP_013182.1 identified by similarity to GP:16412992 YP_013183.1 identified by match to protein family HMM PF00560 YP_013185.1 identified by similarity to OMNI:NTL01LI0551 YP_013186.1 identified by match to protein family HMM PF06030 YP_013187.1 identified by match to protein family HMM PF00571 YP_013188.1 identified by match to protein family HMM PF00465 YP_013189.1 identified by similarity to SP:P36574; match to protein family HMM PF00854; match to protein family HMM TIGR00924 YP_013190.1 identified by match to protein family HMM PF00300 YP_013191.1 identified by match to protein family HMM PF00300 YP_013192.1 identified by similarity to OMNI:NTL01LI0563 YP_013193.1 identified by match to protein family HMM PF01544 YP_013194.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_013195.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_013196.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_013197.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_013198.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_013199.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_013200.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_013201.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_013202.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_013203.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_013204.1 catalyzes the formation of L-histidinol from L-histidinol phosphate YP_013205.1 identified by similarity to SP:P37429; match to protein family HMM PF01035; match to protein family HMM TIGR00589 YP_013206.1 identified by similarity to OMNI:NTL01LI0577 YP_013207.1 identified by match to protein family HMM PF00860 YP_013208.1 identified by match to protein family HMM PF00232 YP_013209.1 identified by match to protein family HMM PF00392 YP_013210.1 identified by similarity to OMNI:NTL01LI0581 YP_013211.1 identified by similarity to OMNI:SA0807 YP_013212.1 identified by similarity to OMNI:NTL01LI0583 YP_013213.1 identified by similarity to GP:16413028 YP_013214.1 identified by match to protein family HMM PF02230 YP_013215.1 identified by similarity to OMNI:NTL01LI0586 YP_013216.1 iap; p60; autolytic enzyme; can cleave bacterial peptidoglycan; secreted by SecA2 system YP_013217.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, especially gram positive pathogens, have paralogs that have been found to be nonessential but do function in secretion of a subset of exported proteins YP_013218.1 identified by match to protein family HMM PF01594 YP_013219.1 identified by similarity to OMNI:NTL01LI0590 YP_013220.1 identified by similarity to GP:16413035; match to protein family HMM PF06030 YP_013221.1 identified by similarity to GP:16413036 YP_013222.1 identified by similarity to SP:P25078; match to protein family HMM PF00875; match to protein family HMM PF03441 YP_013223.1 identified by similarity to OMNI:NTL01LI0594 YP_013224.1 identified by similarity to GP:16413039; match to protein family HMM PF02645; match to protein family HMM PF02734 YP_013226.1 identified by similarity to OMNI:NTL01LI0597 YP_013227.1 identified by similarity to SP:P11097; match to protein family HMM PF01226 YP_013228.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine YP_013229.1 identified by similarity to GP:15777939; match to protein family HMM PF01053; match to protein family HMM TIGR01326 YP_013230.1 identified by match to protein family HMM PF03729 YP_013231.1 identified by match to protein family HMM PF00027 YP_013232.1 identified by match to protein family HMM PF02632 YP_013233.1 identified by match to protein family HMM PF03551 YP_013234.1 identified by similarity to OMNI:NTL01LI0605 YP_013236.1 identified by similarity to OMNI:NTL01LI0607; match to protein family HMM PF00583 YP_013237.1 identified by similarity to OMNI:NTL01LI0608 YP_013238.1 identified by similarity to OMNI:NTL01LI0609 YP_013239.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_013240.1 identified by match to protein family HMM PF01047 YP_013241.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_013242.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_013243.1 identified by match to protein family HMM PF00581 YP_013244.1 identified by match to protein family HMM PF00560; match to protein family HMM PF00746; match to protein family HMM TIGR01167 YP_013245.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds YP_013246.1 identified by match to protein family HMM PF01047 YP_013247.1 identified by match to protein family HMM PF00107 YP_013248.1 identified by similarity to OMNI:EF0951; match to protein family HMM PF00583 YP_013249.1 identified by similarity to OMNI:NTL01LI0620 YP_013250.1 identified by match to protein family HMM PF03009 YP_013252.1 identified by match to protein family HMM PF00069 YP_013253.1 identified by similarity to OMNI:NTL01LI0624 YP_013254.1 identified by similarity to OMNI:NTL01LI0625 YP_013255.1 identified by similarity to OMNI:NTL01LI0626; match to protein family HMM PF01925 YP_013256.1 identified by similarity to OMNI:NTL01LI0627 YP_013257.1 identified by similarity to OMNI:NTL01LI0628 YP_013258.1 identified by match to protein family HMM PF00583 YP_013259.1 identified by match to protein family HMM PF00657 YP_013261.1 identified by match to protein family HMM PF05738; match to protein family HMM TIGR01167; match to protein family HMM TIGR01612 YP_013262.1 identified by similarity to OMNI:NTL01LI0633 YP_013263.1 identified by match to protein family HMM PF00857 YP_013264.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874 YP_013265.1 identified by similarity to SP:P32155; match to protein family HMM PF00359; match to protein family HMM TIGR00848 YP_013266.1 FrwC with FrwB, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; forms translocation channel and contains the specific substrate-binding site YP_013267.1 FrwB with FrwC, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell; cytoplasmic protein that interacts with complex EIIA; contains the second phosphorylation site of the PTS YP_013268.1 identified by similarity to GP:15978906 YP_013269.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_013270.1 identified by similarity to OMNI:NTL01BH0657; match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_013271.1 identified by match to protein family HMM PF01209 YP_013272.1 identified by similarity to OMNI:SP2182 YP_013274.1 identified by similarity to GP:425488 YP_013275.1 identified by match to protein family HMM PF00248 YP_013276.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525 YP_013278.1 identified by match to protein family HMM PF00923 YP_013279.1 identified by match to protein family HMM PF00884 YP_013280.1 identified by match to protein family HMM PF00324 YP_013281.1 identified by similarity to OMNI:EF0656; match to protein family HMM PF00903 YP_013282.1 identified by similarity to OMNI:NTL01LI0646 YP_013283.1 identified by match to protein family HMM PF01544 YP_013284.1 identified by match to protein family HMM PF00392 YP_013285.1 identified by similarity to SP:P49022; match to protein family HMM TIGR01612 YP_013286.1 identified by match to protein family HMM PF00392 YP_013287.1 identified by similarity to OMNI:PG1761; match to protein family HMM PF00583 YP_013288.1 identified by similarity to OMNI:NTL01LI0652; match to protein family HMM PF06161 YP_013289.1 identified by similarity to OMNI:NTL01LI0653 YP_013290.1 identified by match to protein family HMM PF00149 YP_013291.1 identified by similarity to OMNI:NTL01HP01062 YP_013292.1 identified by match to protein family HMM PF04238 YP_013293.1 identified by similarity to OMNI:NTL01LI0656 YP_013294.1 identified by match to protein family HMM PF00730 YP_013295.1 identified by match to protein family HMM PF01381; match to protein family HMM TIGR01716 YP_013296.1 identified by similarity to OMNI:NTL01LL0091; match to protein family HMM PF01527 YP_013297.1 identified by match to protein family HMM TIGR01167 YP_013298.1 identified by similarity to PIR:AB1110 YP_013299.1 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167 YP_013300.1 identified by match to protein family HMM PF02627 YP_013301.1 identified by match to protein family HMM TIGR00097 YP_013302.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_013303.1 identified by similarity to OMNI:SP0074; match to protein family HMM PF00132 YP_013304.1 identified by similarity to OMNI:NTL01LI0666 YP_013305.1 identified by match to protein family HMM PF04241 YP_013306.1 identified by match to protein family HMM PF00005 YP_013307.1 identified by match to protein family HMM PF01061 YP_013309.1 identified by match to protein family HMM PF00106 YP_013310.1 identified by similarity to OMNI:NTL01LI0671 YP_013312.1 identified by match to protein family HMM PF05656 YP_013313.1 identified by similarity to OMNI:NTL01LI0677 YP_013314.1 identified by similarity to OMNI:NTL01LI0678 YP_013315.1 identified by similarity to OMNI:NTL01LI0679 YP_013316.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_013317.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus YP_013318.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus YP_013319.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export YP_013320.1 membrane protein involved in the flagellar export apparatus YP_013321.1 Positive regulator of class III flagellar genes YP_013322.1 makes up the distal portion of the flagellar basal body rod YP_013323.1 identified by similarity to SP:P31105; match to protein family HMM PF01739; match to protein family HMM PF03705 YP_013324.1 identified by similarity to OMNI:NTL01LI0688 YP_013325.1 With Mot B forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. YP_013326.1 identified by similarity to SP:P28612; match to protein family HMM PF00691 YP_013327.1 identified by similarity to OMNI:NTL01LI0691 YP_013328.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00535 YP_013329.1 identified by similarity to SP:P37599; match to protein family HMM PF00072; match to protein family HMM PF01584 YP_013330.1 structural flagella protein YP_013331.1 identified by similarity to SP:P24072; match to protein family HMM PF00072 YP_013332.1 identified by similarity to SP:P29072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895 YP_013333.1 identified by match to protein family HMM PF01052 YP_013334.1 identified by similarity to GP:16413154 YP_013335.1 identified by similarity to OMNI:NTL01LI0699 YP_013336.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod YP_013337.1 the hook connects flagellar basal body to the flagellar filament YP_013338.1 One of three proteins involved in switching the direction of the flagellar rotation YP_013339.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation YP_013340.1 One of three proteins involved in switching the direction of the flagellar rotation YP_013341.1 identified by similarity to OMNI:NTL01LI0705 YP_013342.1 identified by similarity to OMNI:NTL01LI0706 YP_013343.1 identified by similarity to OMNI:NTL01LI0707 YP_013344.1 identified by similarity to OMNI:NTL01LI0708 YP_013345.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook YP_013346.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook YP_013347.2 involved in flagellin assembly YP_013348.1 identified by similarity to SP:P39739 YP_013349.1 identified by similarity to OMNI:NTL01LI0713 YP_013350.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod YP_013351.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_013352.1 forms a junction between the M-ring and FlgB during flagella biosynthesis YP_013353.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_013354.1 One of three proteins involved in switching the direction of the flagellar rotation YP_013355.1 binds to and inhibits the function of flagella specific ATPase FliI YP_013356.1 involved in type III protein export during flagellum assembly YP_013357.1 identified by match to protein family HMM PF01464 YP_013358.1 identified by similarity to OMNI:NTL01LI0722 YP_013359.1 identified by match to protein family HMM PF03551 YP_013360.1 identified by similarity to OMNI:NTL01LI0724 YP_013361.1 identified by similarity to GP:15594010 YP_013362.1 catalyzes the formation of acetyl phosphate from pyruvate YP_013363.1 identified by similarity to SP:P39216; match to protein family HMM PF00015; match to protein family HMM PF00672 YP_013364.1 identified by similarity to OMNI:NTL01LI0728 YP_013365.1 identified by match to protein family HMM PF00746 YP_013366.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_013368.1 identified by similarity to OMNI:NTL01LI0732 YP_013369.1 identified by similarity to OMNI:NTL01LI0733 YP_013370.1 identified by similarity to OMNI:NTL01LI0734 YP_013372.1 identified by match to protein family HMM PF00560 YP_013373.1 identified by match to protein family HMM PF01381 YP_013374.1 identified by similarity to OMNI:NTL01LI0738; match to protein family HMM PF00027 YP_013375.1 identified by match to protein family HMM PF00392 YP_013376.1 identified by match to protein family HMM PF00005 YP_013377.1 identified by similarity to OMNI:NTL01LI0741 YP_013378.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02687 YP_013379.1 identified by similarity to OMNI:NTL01LI0743 YP_013380.1 identified by match to protein family HMM PF00561 YP_013381.1 identified by match to protein family HMM PF00325 YP_013382.1 identified by similarity to GP:14290416 YP_013383.1 identified by similarity to OMNI:EF1683; match to protein family HMM PF00657 YP_013384.1 identified by match to protein family HMM PF00005 YP_013385.1 identified by similarity to OMNI:NTL01LI0746 YP_013386.1 identified by similarity to OMNI:NTL01LI0747; match to protein family HMM PF00903 YP_013387.1 identified by similarity to OMNI:EF1669; match to protein family HMM PF00903 YP_013388.1 identified by similarity to OMNI:NTL01LI0749 YP_013390.1 identified by similarity to OMNI:SP0672 YP_013391.1 identified by match to protein family HMM PF00149 YP_013392.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545 YP_013393.1 identified by similarity to OMNI:NTL01LI0760 YP_013394.1 identified by match to protein family HMM PF00392 YP_013395.1 identified by match to protein family HMM PF00107 YP_013396.1 identified by similarity to OMNI:NTL01LI0763; match to protein family HMM PF00781; match to protein family HMM TIGR00147 YP_013397.1 identified by similarity to OMNI:NTL01LI0764 YP_013398.1 identified by match to protein family HMM PF00480 YP_013399.1 identified by similarity to GP:16413222 YP_013400.1 identified by similarity to OMNI:NTL01LI0128 YP_013401.1 identified by similarity to OMNI:NTL01LI0768; match to protein family HMM PF06173 YP_013402.1 hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel YP_013403.1 identified by similarity to SP:P08187; match to protein family HMM PF03609; match to protein family HMM TIGR00822 YP_013404.1 identified by similarity to SP:P23914; match to protein family HMM PF00158; match to protein family HMM PF00874; match to protein family HMM PF03610 YP_013405.1 identified by similarity to SP:P41407; match to protein family HMM PF02525 YP_013406.1 identified by similarity to SP:O06005; match to protein family HMM PF00324 YP_013407.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; match to protein family HMM TIGR01612 YP_013408.1 identified by match to protein family HMM PF00560; match to protein family HMM TIGR01167 YP_013409.1 identified by similarity to SP:Q51520; match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_013410.1 identified by match to protein family HMM PF04073 YP_013411.1 identified by similarity to OMNI:NTL01LI0779 YP_013412.1 identified by similarity to OMNI:NTL01LI0780; match to protein family HMM PF00795 YP_013413.1 identified by match to protein family HMM PF04474 YP_013414.1 identified by similarity to OMNI:NTL01LI0782 YP_013415.1 identified by similarity to SP:P27844; match to protein family HMM PF00892; match to protein family HMM TIGR00688 YP_013416.1 identified by similarity to GP:3355681; match to protein family HMM PF04264 YP_013417.1 identified by match to protein family HMM PF01047 YP_013418.1 identified by similarity to SP:P25737; match to protein family HMM PF00324 YP_013419.1 identified by similarity to SP:P58724; match to protein family HMM PF00785; match to protein family HMM PF01740; match to protein family HMM TIGR00229 YP_013420.1 identified by similarity to OMNI:NTL01LI0788 YP_013421.1 identified by similarity to OMNI:NTL01LM0796; match to protein family HMM PF04607 YP_013422.1 identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831 YP_013425.1 identified by match to protein family HMM PF01381 YP_013426.1 identified by similarity to SP:P23858; match to protein family HMM PF00005 YP_013427.1 identified by similarity to SP:P23860; match to protein family HMM PF00528 YP_013428.1 identified by similarity to SP:P23859; match to protein family HMM PF00528 YP_013429.1 identified by similarity to SP:P23861; match to protein family HMM PF01547 YP_013430.1 identified by similarity to SP:Q50940; match to protein family HMM PF00194 YP_013431.1 identified by match to protein family HMM PF01966 YP_013432.1 identified by similarity to SP:Q07211; match to protein family HMM PF00480 YP_013433.1 identified by similarity to OMNI:SP0419; match to protein family HMM PF03060 YP_013434.1 identified by similarity to OMNI:NTL01LI0353 YP_013435.1 identified by similarity to OMNI:NTL01LI0354 YP_013436.1 identified by similarity to GP:16409438 YP_013439.1 identified by similarity to OMNI:NTL01LI0808; match to protein family HMM PF00903 YP_013440.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01369; match to protein family HMM TIGR01494 YP_013441.1 identified by similarity to OMNI:NTL01LI0810 YP_013442.1 identified by match to protein family HMM PF00583 YP_013443.1 identified by similarity to OMNI:NTL01LI0812 YP_013444.1 identified by match to protein family HMM PF00376 YP_013445.1 identified by match to protein family HMM PF00248 YP_013446.1 identified by similarity to OMNI:NTL01LI0815 YP_013447.1 identified by match to protein family HMM PF00368; match to protein family HMM TIGR00532 YP_013448.1 identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704 YP_013449.1 identified by similarity to SP:P03833; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR01612 YP_013450.1 identified by similarity to GP:19714343 YP_013451.1 identified by similarity to OMNI:NTL01LI0821; match to protein family HMM PF03547 YP_013452.1 identified by similarity to OMNI:NTL01LL0091 YP_013453.1 identified by similarity to OMNI:NTL01LI0348; match to protein family HMM TIGR01716 YP_013455.1 identified by match to protein family HMM TIGR01167 YP_013456.1 identified by match to protein family HMM PF06146 YP_013457.1 identified by similarity to SP:P45861; match to protein family HMM PF00005; match to protein family HMM PF00664 YP_013458.1 cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate YP_013459.1 identified by similarity to SP:P02982; match to protein family HMM PF00083 YP_013460.1 identified by match to protein family HMM PF01047 YP_013461.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_013462.1 identified by match to protein family HMM TIGR01167; match to protein family HMM TIGR01612 YP_013463.1 identified by similarity to SP:Q03440 YP_013464.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_013465.1 identified by match to protein family HMM PF01717 YP_013466.1 identified by similarity to SP:P14951; match to protein family HMM PF01541; match to protein family HMM PF02151 YP_013467.1 identified by similarity to SP:P10344; similarity to SP:P10345; match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_013468.1 identified by similarity to SP:P27675; match to protein family HMM PF00005 YP_013469.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_013470.1 identified by similarity to OMNI:NTL01LM0843 YP_013471.1 identified by similarity to OMNI:NTL01LI0839 YP_013472.1 identified by match to protein family HMM PF00440 YP_013473.1 identified by similarity to SP:P30743; match to protein family HMM PF00893 YP_013474.1 identified by similarity to SP:P30743; match to protein family HMM PF00893 YP_013475.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_013476.1 identified by similarity to SP:P96613; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143 YP_013477.1 identified by match to protein family HMM PF00561 YP_013478.1 identified by similarity to SP:P06964; match to protein family HMM PF00532 YP_013479.1 identified by match to protein family HMM PF01547 YP_013480.1 identified by match to protein family HMM PF00528 YP_013481.1 identified by match to protein family HMM PF00528 YP_013482.1 identified by similarity to SP:P28904; match to protein family HMM PF00128 YP_013483.1 identified by similarity to OMNI:NTL01LI0851 YP_013484.1 identified by similarity to OMNI:NTL01LI0852 YP_013485.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_013487.1 identified by similarity to SP:P23304; match to protein family HMM PF00270; match to protein family HMM PF00271 YP_013489.1 identified by similarity to OMNI:NTL01LI0855; match to protein family HMM PF06177 YP_013490.1 identified by similarity to OMNI:NTL01LI0856 YP_013491.1 identified by similarity to OMNI:NTL01LI0857; match to protein family HMM PF04909 YP_013492.1 identified by similarity to OMNI:NTL01LI0858 YP_013493.1 identified by similarity to OMNI:NTL01LI0864; match to protein family HMM PF01638 YP_013494.1 identified by match to protein family HMM PF00083 YP_013495.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874 YP_013496.1 identified by similarity to SP:P23532; match to protein family HMM PF02255 YP_013497.1 identified by similarity to SP:P46318; match to protein family HMM PF02302 YP_013498.1 identified by similarity to SP:P46317; match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_013499.1 identified by similarity to SP:O35000; match to protein family HMM PF01182 YP_013500.1 identified by match to protein family HMM PF00248 YP_013501.1 identified by similarity to OMNI:NTL01BH3349 YP_013502.1 identified by match to protein family HMM PF01476; match to protein family HMM PF05737 YP_013503.1 identified by similarity to OMNI:NTL01LI0874 YP_013504.1 identified by similarity to OMNI:NTL01LI0875; match to protein family HMM PF03703 YP_013505.1 identified by match to protein family HMM PF03703 YP_013506.1 catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX YP_013507.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_013508.1 identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492 YP_013509.1 identified by similarity to OMNI:NTL01LI0880 YP_013510.1 identified by similarity to SP:P42409; match to protein family HMM PF01740 YP_013511.1 identified by similarity to SP:P42410; match to protein family HMM PF01740 YP_013512.1 identified by similarity to SP:P42411; match to protein family HMM PF02518 YP_013513.1 identified by similarity to SP:P40399 YP_013514.1 identified by similarity to SP:P17903; match to protein family HMM PF01740; match to protein family HMM TIGR00377 YP_013515.1 binds to sigma-B preventing the formation of an RNA polymerase holoenzyme YP_013516.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma B is not essential for sporulation; rather it is required for maximal expression of ctc and csbA which are transcribed in the early stationary phase under conditions inimical to sporulation; induced by heat shock, salt stress, oxidative stress, glucose limitation, oxygen limitation and entry into stationary phase YP_013517.1 identified by similarity to SP:P17906 YP_013518.1 identified by match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815 YP_013519.1 identified by match to protein family HMM PF00575 YP_013520.1 identified by match to protein family HMM PF03926 YP_013521.1 identified by similarity to SP:P30176 YP_013523.1 identified by similarity to OMNI:NTL01LI0893 YP_013524.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00359; match to protein family HMM TIGR00410 YP_013525.1 identified by match to protein family HMM PF00392 YP_013526.1 identified by match to protein family HMM PF02566 YP_013528.1 identified by similarity to OMNI:EF1738 YP_013529.1 identified by similarity to OMNI:NTL01LI0898 YP_013530.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense YP_013531.1 identified by match to protein family HMM PF00300 YP_013532.1 identified by match to protein family HMM PF01594 YP_013533.1 identified by match to protein family HMM PF00392 YP_013535.1 identified by similarity to OMNI:NTL01BH2122 YP_013536.1 identified by similarity to SP:P21501; match to protein family HMM PF01226; match to protein family HMM TIGR00790 YP_013537.1 identified by similarity to SP:P25526; match to protein family HMM PF00171 YP_013538.1 identified by similarity to SP:Q45399; match to protein family HMM PF02302 YP_013539.1 identified by similarity to SP:P46317; match to protein family HMM PF02378 YP_013540.1 identified by similarity to SP:P26426; match to protein family HMM PF02255 YP_013541.1 identified by similarity to SP:P40740; match to protein family HMM PF00232 YP_013542.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874 YP_013543.1 identified by match to protein family HMM PF00005 YP_013544.1 identified by match to protein family HMM PF03773 YP_013545.1 identified by similarity to OMNI:NTL01LI0914 YP_013546.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis YP_013547.1 identified by match to protein family HMM PF00005 YP_013549.1 identified by match to protein family HMM PF00440 YP_013550.1 identified by match to protein family HMM PF00884 YP_013551.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair YP_013552.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076 YP_013553.1 identified by similarity to OMNI:NTL01BS01024; match to protein family HMM PF00753 YP_013554.1 identified by similarity to SP:P32099; match to protein family HMM PF03099; match to protein family HMM TIGR00545 YP_013555.1 identified by similarity to OMNI:SA0967 YP_013556.1 identified by match to protein family HMM PF02366 YP_013557.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185 YP_013558.1 identified by match to protein family HMM PF00881 YP_013560.1 identified by match to protein family HMM PF01451 YP_013561.1 identified by similarity to OMNI:NTL01LI0929 YP_013562.1 identified by similarity to OMNI:NTL01LI0930 YP_013563.1 identified by match to protein family HMM PF02518 YP_013564.1 identified by similarity to GP:8272443; match to protein family HMM PF00210 YP_013565.1 identified by similarity to OMNI:NTL01LI0933 YP_013566.1 identified by similarity to OMNI:NTL01LI0934; match to protein family HMM PF00633; match to protein family HMM PF00753 YP_013567.1 identified by similarity to GP:16413404 YP_013569.1 identified by match to protein family HMM PF00392 YP_013570.1 identified by match to protein family HMM PF01594 YP_013571.1 identified by similarity to OMNI:NTL01LI0939; match to protein family HMM PF06028 YP_013572.1 identified by similarity to OMNI:NTL01LI0940; match to protein family HMM PF06028 YP_013573.1 identified by similarity to OMNI:NTL01LI0941 YP_013575.1 identified by similarity to OMNI:NTL01LI0943 YP_013576.1 identified by similarity to OMNI:NTL01LI0944 YP_013577.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221 YP_013578.1 identified by match to protein family HMM PF01182; match to protein family HMM TIGR00502 YP_013579.1 identified by match to protein family HMM PF00392 YP_013580.1 identified by similarity to OMNI:NTL01SA0723; match to protein family HMM PF00953 YP_013581.1 identified by match to protein family HMM PF01136 YP_013582.1 identified by match to protein family HMM PF01136 YP_013583.1 identified by similarity to GP:1519287; match to protein family HMM PF04011 YP_013584.1 metalloprotease YP_013585.1 identified by similarity to OMNI:NTL01LI0953; match to protein family HMM PF01323 YP_013586.1 identified by similarity to OMNI:NTL01LI0954; match to protein family HMM PF01928 YP_013587.1 identified by match to protein family HMM PF00515 YP_013588.1 identified by similarity to OMNI:NTL01LI0956; match to protein family HMM PF04607 YP_013589.1 catalyzes the phosphorylation of NAD to NADP YP_013590.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005 YP_013591.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_013592.1 identified by similarity to SP:P39578; match to protein family HMM PF04914; match to protein family HMM PF04915; match to protein family HMM PF04918 YP_013593.1 D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid YP_013594.1 identified by similarity to SP:P39580; match to protein family HMM PF03062 YP_013595.1 transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid YP_013597.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_013598.1 identified by match to protein family HMM PF00583 YP_013599.1 identified by similarity to OMNI:NTL01LI0966; match to protein family HMM PF00756 YP_013600.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_013601.1 identified by match to protein family HMM PF00005 YP_013602.1 identified by similarity to SP:P32011 YP_013603.1 identified by match to protein family HMM PF00083; match to protein family HMM TIGR00711 YP_013604.1 identified by similarity to GP:16413440; match to protein family HMM PF05343 YP_013605.1 identified by similarity to SP:O32770; match to protein family HMM PF00255 YP_013606.1 identified by similarity to OMNI:SP1915; match to protein family HMM PF04397 YP_013607.1 identified by similarity to OMNI:NTL01LI0974 YP_013608.1 identified by match to protein family HMM PF00005 YP_013609.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_013610.1 identified by match to protein family HMM PF01047 YP_013611.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_013613.1 identified by match to protein family HMM PF03741 YP_013614.1 identified by match to protein family HMM PF02386 YP_013615.1 identified by similarity to OMNI:NTL01LI0983 YP_013616.1 identified by similarity to OMNI:NTL01LI0984; match to protein family HMM PF01757 YP_013617.1 identified by similarity to SP:P11742; match to protein family HMM PF01035; match to protein family HMM TIGR00589 YP_013618.1 identified by similarity to SP:Q9S5Z2; match to protein family HMM PF00004; match to protein family HMM PF02151 YP_013619.1 identified by similarity to GP:16413456; match to protein family HMM PF02517 YP_013620.1 identified by similarity to OMNI:NTL01MT01767 YP_013621.1 identified by similarity to SP:P54979 YP_013622.1 identified by similarity to OMNI:SA1035 YP_013623.1 identified by similarity to SP:P07515; match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_013624.1 identified by similarity to SP:P08838; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 YP_013625.1 identified by similarity to OMNI:NTL01LI0993; match to protein family HMM PF02698 YP_013626.1 identified by similarity to SP:O34948; match to protein family HMM PF03446 YP_013627.1 identified by similarity to GP:6318592; match to protein family HMM PF00155 YP_013629.1 identified by similarity to OMNI:SP0822 YP_013630.1 identified by similarity to OMNI:NTL01LI0998; match to protein family HMM PF00571 YP_013631.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_013632.1 identified by match to protein family HMM PF00132 YP_013633.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891 YP_013634.1 identified by similarity to OMNI:NTL01BH2669; match to protein family HMM PF00924 YP_013635.1 identified by similarity to SP:P46920; match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186 YP_013636.1 identified by similarity to SP:P46921; match to protein family HMM PF00528 YP_013637.1 identified by similarity to SP:P46922; match to protein family HMM PF04069 YP_013638.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830 YP_013639.1 identified by match to protein family HMM PF03932 YP_013640.1 identified by similarity to OMNI:NTL01LI1008 YP_013641.1 identified by similarity to GP:16413478 YP_013642.1 identified by match to protein family HMM PF02518 YP_013643.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_013644.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254 YP_013645.1 identified by similarity to OMNI:NTL01LI1013 YP_013646.1 identified by similarity to OMNI:NTL01LI1014 YP_013647.1 identified by similarity to SP:Q02115; match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_013648.1 identified by match to protein family HMM PF00753; match to protein family HMM TIGR00649 YP_013649.1 identified by similarity to OMNI:NTL01LI1017 YP_013650.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_013651.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_013652.1 identified by similarity to OMNI:TM0951 YP_013653.1 identified by similarity to SP:Q58094; match to protein family HMM PF00456 YP_013654.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_013655.1 identified by similarity to SP:P08859; match to protein family HMM PF00370; match to protein family HMM PF02782 YP_013656.1 identified by similarity to SP:P08722; match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830 YP_013657.1 identified by similarity to OMNI:NTL01BMA0834 YP_013658.1 identified by match to protein family HMM PF05675 YP_013659.1 identified by similarity to SP:Q9K8I9 YP_013660.1 identified by similarity to SP:P37732; match to protein family HMM PF00005 YP_013661.1 identified by similarity to SP:P09834; match to protein family HMM PF00528 YP_013662.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256 YP_013663.1 identified by similarity to SP:P12281; match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_013664.1 identified by similarity to SP:P44902; match to protein family HMM PF03205; match to protein family HMM TIGR00176 YP_013665.1 identified by similarity to SP:O31705; match to protein family HMM PF02391 YP_013666.1 identified by similarity to SP:Q56209; match to protein family HMM TIGR01682 YP_013667.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_013668.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_013669.1 identified by similarity to SP:P30746; match to protein family HMM PF00994; match to protein family HMM TIGR00177 YP_013670.1 identified by similarity to GP:13702076; match to protein family HMM PF00899; match to protein family HMM PF05237 YP_013671.1 identified by similarity to OMNI:NTL01LI1032 YP_013672.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_013673.1 identified by similarity to GP:40041; match to protein family HMM PF00676 YP_013674.1 identified by similarity to SP:P21882; match to protein family HMM PF02779; match to protein family HMM PF02780 YP_013675.1 Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA YP_013676.1 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_013677.1 identified by similarity to OMNI:NTL01LI1038 YP_013678.1 identified by match to protein family HMM PF02866 YP_013679.1 identified by similarity to OMNI:NTL01BS01465; match to protein family HMM PF05256 YP_013680.1 identified by similarity to OMNI:NTL01LI1041 YP_013681.1 identified by match to protein family HMM PF01544 YP_013682.1 identified by similarity to OMNI:NTL01LI1043 YP_013683.1 identified by match to protein family HMM PF00459 YP_013684.1 identified by similarity to SP:O07631; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_013685.1 identified by similarity to OMNI:NTL01LI1046 YP_013686.1 identified by similarity to GP:16413516 YP_013687.1 depletion of this protein in Bacillus subtilis results in defects in cell morphology; crystal structure of Staphylococcus protein shows homodimer; ligand binding protein YP_013688.1 identified by match to protein family HMM PF01098 YP_013689.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate YP_013690.1 identified by match to protein family HMM PF01497 YP_013691.1 identified by similarity to SP:P42953; match to protein family HMM PF01061 YP_013692.1 identified by similarity to SP:P42954; match to protein family HMM PF00005 YP_013693.1 identified by match to protein family HMM PF01832 YP_013694.1 identified by similarity to OMNI:NTL01LI1055 YP_013695.1 identified by match to protein family HMM PF00535 YP_013697.1 identified by match to protein family HMM PF00535; match to protein family HMM PF04464 YP_013698.1 identified by similarity to OMNI:NTL01LI1059 YP_013699.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_013700.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_013701.1 identified by match to protein family HMM PF00107 YP_013702.1 identified by match to protein family HMM PF00535 YP_013703.1 identified by similarity to SP:P13485; match to protein family HMM PF04464 YP_013704.1 identified by similarity to SP:P27621; match to protein family HMM PF04464 YP_013705.1 identified by similarity to SP:P27623; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01518 YP_013706.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_013707.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_013708.1 identified by similarity to OMNI:CC1971; match to protein family HMM PF03992 YP_013709.1 identified by similarity to SP:P46318; match to protein family HMM PF02302 YP_013710.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_013711.1 identified by similarity to OMNI:NTL01BH3224 YP_013713.1 identified by match to protein family HMM PF00005 YP_013718.1 identified by similarity to GP:19747978 YP_013719.1 identified by match to protein family HMM PF02517 YP_013720.1 identified by match to protein family HMM PF00165 YP_013721.1 identified by match to protein family HMM PF00903 YP_013724.1 identified by similarity to GP:16413544 YP_013725.1 identified by similarity to OMNI:NTL01LI1076 YP_013727.1 identified by similarity to OMNI:NTL01LI1077 YP_013728.1 identified by similarity to OMNI:NTL01LI1078 YP_013729.1 identified by similarity to OMNI:NTL01LI1079 YP_013730.1 identified by similarity to OMNI:NTL01LI1080 YP_013731.1 identified by similarity to OMNI:NTL01LI1082; match to protein family HMM PF00583 YP_013732.1 identified by similarity to OMNI:EF0116 YP_013733.1 identified by similarity to GP:19916933 YP_013734.1 identified by match to protein family HMM PF00583 YP_013735.1 identified by similarity to OMNI:NTL01LI1086; match to protein family HMM PF00376 YP_013736.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_013737.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_013738.1 identified by similarity to OMNI:NTL01BS01198 YP_013739.1 identified by match to protein family HMM PF00376 YP_013741.1 identified by similarity to GP:19068992 YP_013743.1 identified by match to protein family HMM PF00560; match to protein family HMM PF00746; match to protein family HMM TIGR01167 YP_013744.1 identified by similarity to GP:15025581 YP_013745.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_013746.1 identified by similarity to OMNI:SA1219 YP_013747.1 identified by similarity to GP:3172404 YP_013748.1 identified by similarity to OMNI:NTL01ST2050; match to protein family HMM PF00037; match to protein family HMM PF01512 YP_013749.1 identified by similarity to OMNI:NTL01ST2051; match to protein family HMM PF00936 YP_013750.1 identified by similarity to SP:Q9XDM7; match to protein family HMM PF06132 YP_013751.1 identified by similarity to SP:Q9XDM6 YP_013752.1 identified by similarity to GP:10173468 YP_013753.1 identified by match to protein family HMM PF02283 YP_013754.1 identified by match to protein family HMM PF02654; match to protein family HMM TIGR00317 YP_013755.1 identified by similarity to SP:P52086; match to protein family HMM PF00300 YP_013756.1 identified by similarity to SP:Q05587; match to protein family HMM PF00165 YP_013758.1 identified by similarity to SP:P37448; match to protein family HMM PF00936 YP_013759.1 identified by similarity to SP:P37449; match to protein family HMM PF06000 YP_013760.1 identified by similarity to SP:P37450; match to protein family HMM PF02286 YP_013761.1 identified by similarity to OMNI:NTL01ST2038; match to protein family HMM PF02288 YP_013762.1 identified by similarity to OMNI:NTL01ST2039; match to protein family HMM PF02287 YP_013763.1 identified by similarity to OMNI:NTL01ST2040 YP_013764.1 identified by similarity to GP:5069452 YP_013765.1 identified by similarity to GP:16503277; match to protein family HMM PF00936 YP_013766.1 identified by similarity to OMNI:NTL01ST2042; match to protein family HMM PF00936 YP_013767.1 identified by similarity to OMNI:NTL01ST2044; match to protein family HMM PF06130 YP_013768.1 identified by similarity to SP:P41794 YP_013769.1 identified by similarity to OMNI:NTL01ST2045 YP_013770.1 identified by similarity to OMNI:NTL01ST2046; match to protein family HMM PF03319 YP_013771.1 identified by similarity to OMNI:NTL01ST2047; match to protein family HMM PF01923; match to protein family HMM PF03928; match to protein family HMM TIGR00636 YP_013772.1 identified by similarity to OMNI:NTL01ST2048; match to protein family HMM PF00171 YP_013773.1 identified by similarity to OMNI:NTL01ST2049; match to protein family HMM PF00465 YP_013774.1 identified by similarity to SP:P18156; match to protein family HMM PF00230; match to protein family HMM TIGR00861 YP_013775.1 identified by similarity to SP:P74879; match to protein family HMM PF00871; match to protein family HMM TIGR00016 YP_013776.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase YP_013777.1 identified by similarity to OMNI:NTL01ST2055; match to protein family HMM PF00288 YP_013780.1 identified by match to protein family HMM PF00465 YP_013781.1 identified by match to protein family HMM PF00072; match to protein family HMM PF03861 YP_013782.1 identified by match to protein family HMM PF02518 YP_013783.1 ethanolamine utilization protein EutA YP_013784.1 identified by similarity to SP:P19635 YP_013785.1 catalyzes the formation of acetaldehyde from ethanolamine YP_013786.1 identified by similarity to SP:Q9ZFU9; match to protein family HMM PF06000 YP_013787.1 identified by similarity to SP:P77606; match to protein family HMM PF00936 YP_013788.1 identified by match to protein family HMM PF00171 YP_013789.1 identified by similarity to SP:P41791; match to protein family HMM PF00936 YP_013790.1 identified by similarity to GP:18144564; match to protein family HMM PF01923 YP_013791.1 identified by similarity to GP:18144565; match to protein family HMM PF06130 YP_013792.1 identified by similarity to GP:18144566 YP_013793.1 identified by similarity to SP:P77633; match to protein family HMM PF03319 YP_013794.1 identified by similarity to GP:18144568 YP_013795.1 identified by similarity to SP:P76552; match to protein family HMM PF04346 YP_013796.1 identified by similarity to GP:18144570; match to protein family HMM PF06249 YP_013797.1 identified by match to protein family HMM PF00165 YP_013798.1 identified by similarity to OMNI:NTL01LI1143 YP_013799.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid YP_013800.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group YP_013801.1 catalyzes the interconversion of cobalt-precorrin-8X and cobyrinic acid in the anaerobic biosynthesis of cobalamin YP_013802.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A YP_013803.1 catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a YP_013804.1 catalyzes the methylation of either C-15 or C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W; decarboxylating YP_013805.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465 YP_013806.1 catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3 YP_013807.1 catalyzes the formation of precorrin-4 from precorrin-3B and S-adenosyl-L-methionine YP_013808.1 identified by match to protein family HMM PF02571; match to protein family HMM TIGR00715 YP_013809.1 identified by similarity to SP:Q59294; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469 YP_013810.1 identified by similarity to SP:Q05592; match to protein family HMM PF06180 YP_013811.1 catalyzes the formation of precorrin-3A from precorrin-2 YP_013812.2 catalyzes the ATP-dependent transport of cobalt YP_013813.1 periplasmic cobalt binding component of the cobalt transport system YP_013814.1 identified by similarity to SP:Q05598; match to protein family HMM PF02361 YP_013815.1 identified by similarity to SP:Q05596; match to protein family HMM PF00005; match to protein family HMM TIGR01166 YP_013816.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_013817.1 identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636 YP_013818.1 identified by match to protein family HMM PF04657 YP_013819.1 identified by match to protein family HMM PF04657 YP_013820.1 identified by similarity to OMNI:NTL01LI1165 YP_013821.1 identified by match to protein family HMM PF03551 YP_013822.1 identified by similarity to OMNI:NTL01LI1167 YP_013823.1 identified by match to protein family HMM PF01832 YP_013824.1 identified by match to protein family HMM PF01832 YP_013825.1 identified by similarity to SP:Q48677; match to protein family HMM PF05343 YP_013826.1 identified by match to protein family HMM PF00588 YP_013827.1 identified by similarity to OMNI:NTL01LI1172 YP_013828.1 identified by similarity to OMNI:NTL01LI1173; match to protein family HMM PF01638 YP_013829.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_013830.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_013831.1 identified by match to protein family HMM PF00005 YP_013832.1 identified by match to protein family HMM PF02687; match to protein family HMM TIGR01612 YP_013833.1 identified by match to protein family HMM PF01047 YP_013834.1 identified by match to protein family HMM PF03176; match to protein family HMM TIGR01612 YP_013835.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_013836.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_013837.1 identified by similarity to GP:16413651; match to protein family HMM PF05164 YP_013838.1 identified by similarity to OMNI:NTL01LI1183; match to protein family HMM PF02674 YP_013839.1 identified by match to protein family HMM PF02231; match to protein family HMM PF02811 YP_013840.1 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange YP_013841.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_013842.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_013843.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_013844.1 identified by similarity to OMNI:NTL01LI1189 YP_013845.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_013846.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_013847.1 hydrolyzes non-standard nucleotides such as xanthine and inosine YP_013848.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_013852.1 identified by match to protein family HMM PF00560; match to protein family HMM TIGR01167; match to protein family HMM TIGR01612 YP_013853.1 identified by similarity to OMNI:NTL01SM01795 YP_013854.1 identified by similarity to OMNI:SA2456 YP_013856.1 identified by match to protein family HMM PF00300 YP_013857.1 identified by similarity to OMNI:NTL01LI1203 YP_013858.1 identified by similarity to SP:P42305; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880 YP_013859.1 identified by similarity to GP:16415862 YP_013860.1 identified by match to protein family HMM PF00293 YP_013861.1 identified by similarity to OMNI:NTL01LI1206 YP_013862.1 identified by similarity to GP:19749018 YP_013863.1 identified by similarity to SP:P22262 YP_013865.1 identified by match to protein family HMM PF02588 YP_013867.1 identified by similarity to OMNI:NTL01LI1210 YP_013868.1 identified by similarity to SP:P39796; match to protein family HMM PF00392 YP_013869.1 identified by similarity to SP:P28904; match to protein family HMM PF00128 YP_013870.1 identified by similarity to SP:P36672; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826 YP_013871.1 identified by match to protein family HMM PF00293 YP_013872.1 identified by similarity to OMNI:NTL01LI1215 YP_013874.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_013875.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_013876.1 identified by similarity to OMNI:NTL01LI1219 YP_013877.1 identified by similarity to SP:Q07683; match to protein family HMM PF01381 YP_013878.1 identified by match to protein family HMM PF01381 YP_013879.1 identified by similarity to OMNI:NTL01LI1292 YP_013882.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_013884.1 binds and unfolds substrates as part of the ClpXP protease YP_013885.1 identified by similarity to SP:P72365; match to protein family HMM PF00461 YP_013886.1 identified by similarity to SP:P72365; match to protein family HMM PF00461 YP_013887.1 identified by similarity to SP:P28628; match to protein family HMM PF00461 YP_013888.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc) YP_013889.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_013890.1 identified by similarity to OMNI:NTL01LI1302; match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_013891.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_013892.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine YP_013893.1 identified by similarity to SP:P22885; match to protein family HMM PF00589; match to protein family HMM PF02899 YP_013894.1 heat shock protein involved in degradation of misfolded proteins YP_013895.1 heat shock protein involved in degradation of misfolded proteins YP_013896.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor YP_013897.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051 YP_013898.1 identified by similarity to OMNI:NTL01LI1310 YP_013899.1 identified by match to protein family HMM PF01263 YP_013900.1 identified by similarity to OMNI:NTL01LI1312; match to protein family HMM PF02660; match to protein family HMM TIGR00023 YP_013901.1 identified by similarity to OMNI:NTL01LM1277; match to protein family HMM PF02629 YP_013902.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_013903.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_013904.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 YP_013905.1 identified by match to protein family HMM PF00560 YP_013906.1 identified by match to protein family HMM PF01757 YP_013907.1 identified by similarity to SP:P37965; match to protein family HMM PF03009 YP_013908.1 identified by similarity to SP:P18158; match to protein family HMM PF01266 YP_013909.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_013910.1 identified by match to protein family HMM PF01423; match to protein family HMM PF03329 YP_013914.1 identified by similarity to SP:P37582; match to protein family HMM PF00376 YP_013915.1 identified by similarity to SP:P12425; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_013916.1 identified by similarity to SP:P30329; match to protein family HMM PF02040; match to protein family HMM TIGR00935 YP_013917.1 identified by match to protein family HMM PF00583 YP_013918.1 Represses a number of genes involved in the response to DNA damage YP_013919.1 identified by similarity to OMNI:NTL01LI1330 YP_013920.1 identified by similarity to OMNI:NTL01LI1331; match to protein family HMM PF05979 YP_013921.1 identified by match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232 YP_013922.1 identified by similarity to SP:P45708; match to protein family HMM PF03672 YP_013923.1 identified by similarity to GP:16413818 YP_013924.1 identified by match to protein family HMM PF02195 YP_013926.1 identified by match to protein family HMM PF00176 YP_013927.1 identified by similarity to OMNI:NTL01LI1338 YP_013928.1 Catalyzes the phosphorylation of UMP to UDP YP_013929.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_013930.1 catalyzes the formation of UDP pyrophosphate from isopentenyl pyrophosphate YP_013931.1 identified by match to protein family HMM PF01148 YP_013932.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_013933.1 identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_013934.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_013935.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity YP_013936.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_013937.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_013938.1 identified by similarity to SP:P32728; match to protein family HMM PF04296 YP_013939.1 identified by match to protein family HMM PF01248 YP_013940.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_013941.1 identified by similarity to SP:P32730; match to protein family HMM PF04456 YP_013942.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_013943.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_013944.1 identified by match to protein family HMM PF01687; match to protein family HMM TIGR00083; match to protein family HMM TIGR00125 YP_013945.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_013946.1 identified by similarity to SP:P50849; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 YP_013947.1 identified by similarity to OMNI:NTL01LI1358; match to protein family HMM PF03193; match to protein family HMM TIGR00157 YP_013948.1 identified by similarity to GP:16413843 YP_013950.2 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_013951.1 identified by match to protein family HMM PF01812 YP_013952.1 identified by match to protein family HMM PF01694 YP_013953.1 identified by similarity to GP:16410754; match to protein family HMM PF06014 YP_013954.1 identified by similarity to SP:P54495; match to protein family HMM PF00480; match to protein family HMM TIGR00744 YP_013956.1 identified by similarity to OMNI:NTL01LI1367 YP_013957.1 identified by similarity to PIR:AB1605 YP_013958.1 identified by similarity to GP:16413853 YP_013959.1 identified by similarity to OMNI:NTL01LI1370 YP_013960.1 identified by similarity to SP:P25955 YP_013961.1 identified by similarity to OMNI:NTL01LI1372; match to protein family HMM PF00482 YP_013962.1 identified by similarity to SP:P25953; match to protein family HMM PF00437 YP_013963.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_013964.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_013965.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_013966.1 identified by match to protein family HMM PF00581 YP_013967.1 identified by similarity to GP:16413862 YP_013968.1 identified by similarity to SP:P54515 YP_013969.1 identified by match to protein family HMM PF00557 YP_013970.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_013971.1 identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531 YP_013972.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_013973.1 identified by similarity to SP:P54519; match to protein family HMM PF03780 YP_013974.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_013975.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_013976.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_013977.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_013978.1 identified by similarity to SP:Q08291; match to protein family HMM PF00348 YP_013979.1 identified by match to protein family HMM PF00313 YP_013980.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_013981.1 identified by similarity to SP:Q06803; match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478 YP_013982.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes YP_013983.1 identified by similarity to SP:P17894; match to protein family HMM TIGR00634 YP_013984.1 identified by match to protein family HMM PF01515 YP_013985.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate YP_013986.1 E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_013987.1 identified by similarity to SP:P37940; match to protein family HMM PF00676 YP_013988.1 identified by similarity to SP:P37941; match to protein family HMM PF02779; match to protein family HMM PF02780 YP_013989.1 identified by similarity to SP:P37942; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817 YP_013991.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01883 YP_013993.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_013994.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_013995.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_013996.1 involved in biogenesis of membrane proteins; Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site YP_013997.1 identified by similarity to OMNI:NTL01LI1406 YP_013998.1 catalyzes the hydrolysis of acylphosphate YP_013999.1 identified by similarity to OMNI:SA1438 YP_014000.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate YP_014001.1 identified by match to protein family HMM PF00581 YP_014002.1 identified by match to protein family HMM PF02588 YP_014003.1 identified by similarity to SP:P21458; match to protein family HMM PF01580 YP_014004.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_014005.1 identified by similarity to SP:Q48754; match to protein family HMM PF02608 YP_014007.1 identified by match to protein family HMM PF02653 YP_014008.1 identified by match to protein family HMM PF02653 YP_014009.1 identified by similarity to OMNI:NTL01BH2396; match to protein family HMM PF05193 YP_014010.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_014011.1 identified by similarity to SP:P51831; match to protein family HMM PF00106 YP_014013.1 identified by similarity to SP:P46322; match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_014014.1 identified by similarity to SP:P46323; match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200 YP_014015.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_014016.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP YP_014017.1 identified by match to protein family HMM PF00583 YP_014018.1 identified by similarity to OMNI:NTL01LI1427; match to protein family HMM PF00149; match to protein family HMM TIGR00282 YP_014019.1 identified by similarity to GP:16413912 YP_014020.1 This protein performs the mismatch recognition step during the DNA repair process YP_014021.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_014022.1 identified by similarity to SP:P30300; match to protein family HMM PF04309 YP_014023.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255 YP_014024.1 identified by similarity to SP:P09374; match to protein family HMM PF04055 YP_014025.1 identified by match to protein family HMM PF03551 YP_014026.1 identified by match to protein family HMM PF00083 YP_014027.1 identified by similarity to OMNI:NTL01LI1436 YP_014028.1 identified by match to protein family HMM PF01381 YP_014029.1 identified by similarity to OMNI:NTL01LM1404 YP_014030.1 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167 YP_014031.1 identified by similarity to SP:P45359; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930 YP_014032.1 identified by similarity to GP:9937383; match to protein family HMM PF01154; match to protein family HMM TIGR01835 YP_014034.1 identified by similarity to GP:17982120 YP_014035.1 identified by match to protein family HMM PF01663 YP_014036.1 identified by match to protein family HMM PF01594 YP_014037.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_014038.1 identified by similarity to SP:O34992; match to protein family HMM PF00005; match to protein family HMM TIGR01186 YP_014039.1 identified by similarity to SP:O32243; match to protein family HMM PF00528; match to protein family HMM PF04069 YP_014040.1 identified by similarity to OMNI:NTL01LI1451 YP_014041.1 identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197 YP_014042.1 identified by similarity to SP:O34742; match to protein family HMM PF00528 YP_014043.1 identified by similarity to SP:O32243; match to protein family HMM PF04069 YP_014044.1 identified by similarity to GP:12003349; match to protein family HMM PF00528 YP_014045.1 identified by similarity to SP:O34992; match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186 YP_014047.1 identified by similarity to GP:16501831; match to protein family HMM PF04237 YP_014048.1 identified by match to protein family HMM PF00005 YP_014049.1 identified by similarity to OMNI:NTL01LI1460 YP_014050.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852 YP_014051.1 identified by similarity to OMNI:NTL01LI1462; match to protein family HMM PF00753; match to protein family HMM TIGR00649 YP_014052.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_014053.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive YP_014054.1 identified by similarity to SP:Q04797; match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296 YP_014055.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_014056.1 identified by similarity to SP:P28764; match to protein family HMM PF00081; match to protein family HMM PF02777 YP_014058.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_014059.1 identified by match to protein family HMM PF03591 YP_014060.1 identified by similarity to OMNI:NTL01LI1470; match to protein family HMM PF06063 YP_014061.1 identified by similarity to SP:P24327; match to protein family HMM PF00639 YP_014062.1 identified by similarity to SP:Q9XDA4; match to protein family HMM PF01475 YP_014063.1 identified by similarity to GP:5019735; match to protein family HMM PF00950 YP_014064.1 identified by similarity to SP:Q9XDA6; match to protein family HMM PF00005 YP_014065.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_014066.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues YP_014067.1 identified by similarity to SP:P42305; match to protein family HMM PF00270; match to protein family HMM PF00271 YP_014068.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_014069.1 identified by similarity to SP:Q92BQ8; match to protein family HMM PF01784; match to protein family HMM TIGR00486 YP_014070.1 identified by similarity to OMNI:EF1380; match to protein family HMM PF04816 YP_014071.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium YP_014072.1 identified by similarity to SP:P47762; match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391 YP_014073.1 identified by similarity to OMNI:NTL01LI1482; match to protein family HMM PF02639 YP_014074.1 identified by match to protein family HMM PF03618 YP_014075.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_014076.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_014077.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_014078.1 identified by similarity to OMNI:NTL01LI1487 YP_014079.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_014080.1 identified by match to protein family HMM PF00383; match to protein family HMM TIGR01354 YP_014081.1 identified by similarity to SP:Q05888; match to protein family HMM PF01219 YP_014082.1 identified by similarity to OMNI:NTL01LI1491; match to protein family HMM PF02130; match to protein family HMM TIGR00043 YP_014083.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_014084.1 identified by match to protein family HMM PF02562 YP_014085.1 identified by similarity to GP:10173971; match to protein family HMM PF02637 YP_014086.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_014087.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_014088.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_014089.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_014090.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_014091.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_014092.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_014093.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_014094.1 identified by similarity to OMNI:NTL01SA0329 YP_014095.1 identified by match to protein family HMM PF00376 YP_014096.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_014097.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_014098.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_014099.1 identified by similarity to SP:P39695; match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361 YP_014100.1 identified by similarity to SP:P32393; match to protein family HMM PF00383 YP_014101.1 identified by similarity to SP:P39694; match to protein family HMM PF00633; match to protein family HMM TIGR00426 YP_014104.1 identified by similarity to OMNI:NTL01LI1511; match to protein family HMM PF01966; match to protein family HMM TIGR00488 YP_014105.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_014106.1 identified by similarity to OMNI:NTL01LI1513; match to protein family HMM PF01985; match to protein family HMM TIGR00253 YP_014107.1 identified by similarity to SP:P54374; match to protein family HMM PF01488; match to protein family HMM TIGR00507 YP_014108.1 in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis YP_014109.1 identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01668 YP_014110.1 identified by match to protein family HMM PF01432 YP_014111.1 identified by similarity to SP:P24247; match to protein family HMM PF01048; match to protein family HMM TIGR01704 YP_014113.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_014114.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor YP_014115.1 identified by match to protein family HMM PF01596 YP_014116.1 identified by similarity to OMNI:NTL01LI1523; match to protein family HMM PF02618; match to protein family HMM TIGR00247 YP_014117.1 identified by similarity to OMNI:NTL01LI1524; match to protein family HMM PF00597 YP_014119.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_014120.1 identified by similarity to OMNI:EF1202; match to protein family HMM PF06135 YP_014121.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_014122.1 identified by match to protein family HMM PF00005 YP_014123.1 identified by match to protein family HMM PF02687 YP_014124.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_014125.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_014126.1 identified by match to protein family HMM TIGR01448 YP_014127.1 identified by match to protein family HMM PF00515 YP_014128.1 identified by similarity to OMNI:NTL01LI1535 YP_014129.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_014130.1 identified by similarity to SP:P57795; match to protein family HMM PF00266 YP_014131.1 identified by match to protein family HMM PF00004 YP_014132.1 identified by similarity to OMNI:SA1681; match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_014133.1 identified by similarity to SP:Q07429; match to protein family HMM PF00909; match to protein family HMM TIGR00836 YP_014134.1 identified by similarity to SP:Q07428; match to protein family HMM PF00543 YP_014135.1 identified by similarity to OMNI:NTL01LI1542 YP_014136.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_014137.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_014138.1 identified by match to protein family HMM PF01520 YP_014139.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_014140.1 identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_014141.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_014142.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_014144.1 part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_014146.1 identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739 YP_014147.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_014148.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_014149.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_014150.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_014151.1 identified by similarity to SP:P14561; match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771 YP_014152.1 identified by similarity to OMNI:NTL01LI1559; match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_014153.1 catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis YP_014154.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_014155.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP YP_014156.1 identified by similarity to SP:P18156; match to protein family HMM PF00230; match to protein family HMM TIGR00861 YP_014157.1 involved in the peptidyltransferase reaction during translation YP_014158.1 identified by match to protein family HMM PF04327 YP_014159.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_014160.1 identified by match to protein family HMM PF00575 YP_014161.1 identified by similarity to SP:Q01464; match to protein family HMM PF00991; match to protein family HMM TIGR01968 YP_014162.1 blocks the formation of polar Z-ring septums YP_014163.1 identified by similarity to SP:Q01467; match to protein family HMM PF04093 YP_014164.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_014165.1 functions in MreBCD complex in some organisms YP_014167.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_014168.1 identified by similarity to SP:P15378; match to protein family HMM PF01478 YP_014170.1 identified by similarity to SP:Q05865; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01499 YP_014171.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_014172.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_014173.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_014174.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis YP_014175.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_014176.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_014177.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_014178.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_014180.1 Primosomal protein that may act to load helicase DnaC during DNA replication YP_014181.1 identified by similarity to SP:P07908 YP_014182.1 identified by similarity to GP:16414084; match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_014183.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_014184.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_014185.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_014186.1 Converts isocitrate to alpha ketoglutarate YP_014187.1 catalyzes the formation of citrate from acetyl-CoA and oxaloacetate YP_014189.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein YP_014190.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_014191.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_014192.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_014193.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_014194.1 identified by similarity to SP:O34623; match to protein family HMM PF01336; match to protein family HMM PF02231; match to protein family HMM PF02811; match to protein family HMM TIGR00594; match to protein family HMM TIGR01612 YP_014195.1 identified by similarity to OMNI:NTL01LI1599; match to protein family HMM PF01368; match to protein family HMM PF02272 YP_014196.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03061 YP_014197.1 catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins YP_014198.1 identified by similarity to SP:P46545; match to protein family HMM PF00557 YP_014199.1 identified by match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518 YP_014200.1 identified by match to protein family HMM PF00582 YP_014201.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_014202.1 identified by similarity to SP:P22772 YP_014203.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein YP_014204.1 identified by match to protein family HMM PF06271 YP_014205.1 identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706 YP_014206.1 catalyzes the phosphorylation of NAD to NADP YP_014207.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_014208.1 identified by similarity to SP:P36839; match to protein family HMM PF00202; match to protein family HMM TIGR00707 YP_014209.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_014210.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_014211.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_014212.1 Required for the synthesis of the thiazole moiety YP_014213.1 identified by match to protein family HMM PF00266 YP_014214.1 acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation YP_014216.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_014217.1 identified by match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234 YP_014218.1 identified by similarity to SP:P25144; match to protein family HMM PF00356; match to protein family HMM PF00532; match to protein family HMM TIGR01481 YP_014219.1 catalyzes the formation of 3-deoxy-D-aribino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate and the formation of prephenate from chorismate YP_014220.1 identified by similarity to SP:P40780 YP_014221.1 identified by match to protein family HMM PF06103 YP_014223.1 identified by similarity to GP:5457310; match to protein family HMM PF00578 YP_014225.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_014226.1 identified by similarity to OMNI:NTL01SA1619; match to protein family HMM PF01580 YP_014227.1 identified by match to protein family HMM PF01588 YP_014229.1 identified by match to protein family HMM PF00085 YP_014230.1 identified by similarity to OMNI:NTL01LI1640 YP_014231.1 identified by similarity to SP:Q48677; match to protein family HMM PF05343 YP_014232.1 identified by similarity to OMNI:EF3039 YP_014233.1 identified by similarity to SP:P76424 YP_014234.1 identified by match to protein family HMM PF00753 YP_014235.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_014236.1 identified by match to protein family HMM PF01636 YP_014237.1 identified by match to protein family HMM PF01047 YP_014238.1 identified by match to protein family HMM PF01063; match to protein family HMM TIGR01121 YP_014239.1 divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases YP_014240.1 identified by match to protein family HMM PF00293 YP_014241.1 identified by similarity to GP:16414150; match to protein family HMM PF01256; match to protein family HMM TIGR00196 YP_014242.1 identified by match to protein family HMM PF01569 YP_014243.1 identified by match to protein family HMM PF01943 YP_014244.1 identified by match to protein family HMM PF01943 YP_014245.1 identified by similarity to OMNI:NTL01LI1656 YP_014246.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_014247.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_014248.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis YP_014249.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_014250.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_014251.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_014252.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_014253.1 identified by match to protein family HMM PF00171; match to protein family HMM PF00465 YP_014255.1 identified by match to protein family HMM PF00005 YP_014257.1 identified by match to protein family HMM PF02016 YP_014258.1 identified by similarity to SP:P05100; match to protein family HMM PF03352 YP_014259.1 Catalyzes the conversion of citrate to isocitrate YP_014260.1 identified by match to protein family HMM PF01740 YP_014261.1 identified by similarity to OMNI:NTL01LI1673 YP_014262.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM TIGR01612 YP_014263.1 identified by match to protein family HMM TIGR01612 YP_014264.1 identified by similarity to SP:P23479; match to protein family HMM PF00149; match to protein family HMM TIGR00619 YP_014265.1 identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530 YP_014266.1 identified by similarity to OMNI:NTL01LI1678 YP_014267.1 identified by similarity to OMNI:SA1380 YP_014268.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_014269.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_014273.1 identified by match to protein family HMM PF04892 YP_014275.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_014276.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_014277.1 identified by similarity to SP:P27219; match to protein family HMM PF00367; match to protein family HMM PF02378 YP_014278.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway YP_014279.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_014280.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_014281.1 identified by similarity to GP:16414257; match to protein family HMM PF04055; match to protein family HMM TIGR01212 YP_014282.1 identified by similarity to OMNI:NTL01BH3288 YP_014283.1 identified by similarity to SP:P54420; match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_014284.1 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_014285.1 identified by similarity to OMNI:NTL01LI1763 YP_014286.1 identified by match to protein family HMM PF02494; match to protein family HMM TIGR01612 YP_014287.1 identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771 YP_014288.1 identified by similarity to SP:O34365 YP_014289.1 identified by match to protein family HMM PF00293 YP_014290.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278 YP_014291.1 identified by similarity to GP:4249623; match to protein family HMM PF01297 YP_014292.1 converts O-succinylbenzoate to O-succinylbenzoyl-CoA YP_014293.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA YP_014294.1 identified by similarity to OMNI:EF0449; match to protein family HMM PF00561 YP_014295.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis YP_014296.1 synthesizes isochorismate acid from chorismate YP_014297.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate YP_014298.1 catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine; expressed in B. subtilis under methionine starvation conditions YP_014299.1 catalyzes the formation of L-homocysteine from cystathionine YP_014300.1 identified by similarity to SP:Q9RAS9; match to protein family HMM PF01053 YP_014301.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_014302.1 identified by match to protein family HMM PF00083 YP_014303.1 identified by similarity to SP:P71086; match to protein family HMM PF01475 YP_014304.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_014305.1 converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate YP_014306.1 identified by similarity to OMNI:NTL01LI1783; match to protein family HMM PF06081 YP_014307.1 identified by similarity to OMNI:SA1925; match to protein family HMM PF04167 YP_014308.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_014309.1 identified by similarity to SP:Q05869; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084 YP_014310.1 identified by similarity to OMNI:SA1927 YP_014311.1 identified by match to protein family HMM PF00692 YP_014312.1 identified by similarity to GP:16414303 YP_014313.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_014314.1 identified by similarity to GP:15980756; match to protein family HMM TIGR01777 YP_014315.1 identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331 YP_014316.1 identified by match to protein family HMM PF04892 YP_014317.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_014319.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00785; match to protein family HMM TIGR00229 YP_014320.1 identified by similarity to OMNI:NTL01LI1797 YP_014321.1 identified by similarity to OMNI:NTL01LI1798 YP_014322.1 identified by match to protein family HMM PF00903 YP_014323.1 identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_014324.1 identified by similarity to GP:15978279; match to protein family HMM PF02566 YP_014325.1 identified by match to protein family HMM PF01712 YP_014326.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765 YP_014327.1 identified by similarity to OMNI:NTL01LI1807 YP_014328.1 identified by similarity to SP:P30180; match to protein family HMM PF02522 YP_014329.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn YP_014330.1 identified by match to protein family HMM PF00258; match to protein family HMM TIGR01753 YP_014331.1 identified by similarity to SP:P39762; match to protein family HMM PF02073 YP_014332.1 identified by match to protein family HMM PF00083 YP_014334.1 identified by similarity to SP:P39763; match to protein family HMM TIGR00904 YP_014335.1 identified by similarity to GP:10172921 YP_014336.1 identified by similarity to OMNI:NTL01LI1814 YP_014337.1 identified by match to protein family HMM PF00440 YP_014338.1 identified by similarity to OMNI:NTL01LL0179; match to protein family HMM PF05913 YP_014339.1 identified by similarity to SP:P46319; match to protein family HMM PF02255 YP_014340.1 identified by similarity to SP:P46318; match to protein family HMM PF02302 YP_014341.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_014343.1 identified by match to protein family HMM PF00005 YP_014344.1 identified by match to protein family HMM PF00392 YP_014345.1 identified by match to protein family HMM PF01408 YP_014346.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_014347.1 identified by similarity to OMNI:NTL01LI1827; match to protein family HMM TIGR01612 YP_014348.1 identified by similarity to SP:P33363; match to protein family HMM PF00933; match to protein family HMM PF01915 YP_014349.1 identified by match to protein family HMM PF01547 YP_014350.1 identified by match to protein family HMM PF00528 YP_014351.1 identified by match to protein family HMM PF00528 YP_014352.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_014353.1 identified by similarity to SP:P39812; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898; match to protein family HMM TIGR01612 YP_014354.1 identified by similarity to SP:P20668; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_014355.1 identified by match to protein family HMM PF00583 YP_014356.1 identified by match to protein family HMM PF00465 YP_014357.1 identified by similarity to SP:P10344; match to protein family HMM PF00497 YP_014358.1 identified by similarity to SP:P10346; match to protein family HMM PF00005 YP_014359.1 identified by similarity to SP:P76315; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_014360.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_014361.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR01178 YP_014362.1 identified by similarity to OMNI:NTL01LI1842 YP_014364.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_014365.1 identified by match to protein family HMM PF02687 YP_014366.1 identified by match to protein family HMM PF00005 YP_014367.1 identified by similarity to OMNI:NTL01LI1847 YP_014368.1 identified by match to protein family HMM PF01202 YP_014370.1 identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_014372.1 similar to YegS from E. coli YP_014373.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_014374.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_014375.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_014377.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB YP_014378.1 identified by similarity to SP:P56255; match to protein family HMM PF00580; match to protein family HMM TIGR01073 YP_014379.1 PcrB-like protein; GGGP synthase; member of prenyltransferases that transfer isoprenoid groups to nonisoprenoid acceptors; functions in form GGGP from glycerol-1-phosphate (G-1-P) and geranylgeranyl pyrophosphate (GGPP); important in lipid metabolism and especially important as the ether linkages in archaea are different than those in bacteria; GGGP synthase lies at the branch point for membrane lipid biosynthesis; cytosolic; T acidophilum protein acts as a homodimer while M thermoautotrophicum protein has been reported to function as a pentamer YP_014380.1 identified by match to protein family HMM PF00209 YP_014381.1 identified by similarity to OMNI:NTL01LI1861 YP_014383.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_014384.1 involved in de novo purine biosynthesis YP_014385.1 identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639 YP_014386.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_014387.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_014388.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_014389.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_014390.1 With PurL and PurQ catalyzes the conversion of formylglycinamide ribonucleotide, ATP, and glutamine to formylglycinamidine ribonucleotide, ADP, and glutamate in the fourth step of the purine biosynthetic pathway YP_014391.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_014392.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_014393.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_014394.1 Catalyzes a step in the de novo purine nucleotide biosynthetic pathway YP_014396.1 identified by match to protein family HMM PF01966 YP_014397.1 identified by match to protein family HMM PF00005 YP_014398.1 identified by similarity to GP:16414392 YP_014399.1 catalyzes the release of the N-terminal amino acid from a tripeptide YP_014400.1 identified by similarity to OMNI:NTL01LI1880 YP_014401.1 identified by similarity to SP:P37454; match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_014402.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_014403.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_014404.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_014406.1 identified by similarity to GP:2879768; match to protein family HMM PF00560 YP_014408.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_014409.1 identified by match to protein family HMM PF00376 YP_014410.1 identified by match to protein family HMM PF02525 YP_014411.1 identified by match to protein family HMM PF00753 YP_014412.1 identified by similarity to OMNI:NTL01LI1892 YP_014413.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_014414.1 Essential for efficient processing of 16S rRNA YP_014416.1 identified by match to protein family HMM PF00117 YP_014417.1 identified by similarity to SP:O31738 YP_014418.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_014420.1 identified by similarity to SP:Q05918 YP_014421.1 identified by similarity to SP:P37105; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_014422.1 identified by match to protein family HMM PF04297 YP_014423.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_014424.1 identified by similarity to SP:P51834; match to protein family HMM PF02463; match to protein family HMM PF02483; match to protein family HMM TIGR01612 YP_014425.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_014427.1 carries the fatty acid chain in fatty acid biosynthesis YP_014428.1 identified by similarity to SP:P51831; match to protein family HMM PF00106; match to protein family HMM TIGR01830 YP_014429.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_014430.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_014431.1 negative regulator of genes involved in fatty acid and phospholipid biosynthesis for gram positive bacteria YP_014432.1 catalyzes branch migration in Holliday junction intermediates YP_014433.1 identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718 YP_014434.1 identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719 YP_014435.1 identified by match to protein family HMM PF02734 YP_014436.1 identified by match to protein family HMM PF03780 YP_014437.1 required for 70S ribosome assembly YP_014438.1 identified by match to protein family HMM PF04263 YP_014439.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_014440.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_014441.1 identified by match to protein family HMM PF00069; match to protein family HMM PF03793 YP_014443.1 identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563 YP_014444.1 identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460 YP_014445.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_014446.1 identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521 YP_014447.1 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_014448.1 Essential for recycling GMP and indirectly, cGMP YP_014449.1 identified by similarity to OMNI:NTL01LI1929; match to protein family HMM PF03755; match to protein family HMM TIGR00255 YP_014450.1 identified by similarity to GP:19110786; match to protein family HMM PF05670; match to protein family HMM PF05833 YP_014451.1 identified by similarity to GP:4105359 YP_014452.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_014453.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_014454.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits YP_014455.1 identified by similarity to SP:P25983; match to protein family HMM PF00175 YP_014456.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_014457.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_014458.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_014459.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_014460.1 identified by similarity to SP:P41006; match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_014461.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_014462.1 identified by similarity to OMNI:NTL01LI1942 YP_014463.1 identified by match to protein family HMM PF01740 YP_014464.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_014465.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_014466.1 identified by similarity to OMNI:NTL01BH2033; match to protein family HMM PF00860 YP_014467.1 NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones YP_014468.1 identified by similarity to SP:P31304; match to protein family HMM PF01297 YP_014469.1 identified by similarity to SP:Q55282; match to protein family HMM PF00950 YP_014470.1 identified by similarity to SP:Q55281; match to protein family HMM PF00005 YP_014471.1 identified by match to protein family HMM PF01047 YP_014472.1 identified by match to protein family HMM PF00595; match to protein family HMM PF01471; match to protein family HMM PF03572; match to protein family HMM TIGR00225 YP_014473.1 identified by match to protein family HMM PF00403; match to protein family HMM TIGR00003 YP_014474.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_014475.1 identified by similarity to OMNI:NTL01BH0559; match to protein family HMM PF02583 YP_014476.1 identified by match to protein family HMM PF02557 YP_014477.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate YP_014478.1 identified by similarity to OMNI:EF1680 YP_014479.1 identified by match to protein family HMM PF01408 YP_014480.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress YP_014481.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress YP_014482.1 identified by similarity to OMNI:EF1682 YP_014484.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_014485.1 identified by similarity to SP:P54176; match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_014486.1 identified by similarity to GP:16414480; match to protein family HMM PF00571 YP_014487.1 identified by similarity to SP:P54470; match to protein family HMM PF03618 YP_014488.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_014489.1 identified by similarity to OMNI:NTL01LI1969 YP_014490.1 identified by similarity to GP:18145220; match to protein family HMM PF06081 YP_014491.1 identified by match to protein family HMM PF00597 YP_014492.1 identified by similarity to SP:P39790 YP_014493.1 identified by match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_014494.1 identified by similarity to GP:16414487 YP_014495.1 identified by match to protein family HMM PF00186 YP_014496.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_014497.1 identified by match to protein family HMM PF00005 YP_014498.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate YP_014499.1 involved in manganese homeostasis; activates the transcription of the mntABCD operon YP_014500.1 identified by similarity to SP:P51777; match to protein family HMM PF00313 YP_014501.1 identified by match to protein family HMM PF00075 YP_014502.1 identified by similarity to SP:P54161; match to protein family HMM PF01367; match to protein family HMM PF02739 YP_014503.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_014504.1 identified by similarity to GP:4587115; match to protein family HMM PF00704 YP_014505.1 identified by similarity to SP:P42086; match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_014506.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine YP_014507.1 identified by similarity to SP:P42663; match to protein family HMM PF02074 YP_014508.1 identified by similarity to SP:P50840; match to protein family HMM PF01170 YP_014509.1 identified by similarity to PIR:AG1682 YP_014510.1 identified by similarity to OMNI:NTL01LI1989; match to protein family HMM PF05103 YP_014512.1 identified by similarity to SP:P50833 YP_014513.1 functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC YP_014514.1 identified by match to protein family HMM PF00041; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_014515.1 identified by similarity to OMNI:NTL01LI1994 YP_014516.1 identified by similarity to SP:P39788; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_014517.1 identified by similarity to SP:P39787; match to protein family HMM PF04271; match to protein family HMM TIGR01446 YP_014518.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_014519.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_014521.1 unwinds DNA YP_014522.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_014523.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_014524.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_014525.1 identified by similarity to SP:P37249 YP_014526.1 identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121 YP_014527.1 catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity YP_014528.1 catalyzes the formation of methylglyoxal from glycerone phosphate YP_014529.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_014530.1 identified by similarity to SP:P42979; match to protein family HMM PF03819 YP_014531.1 identified by similarity to OMNI:NTL01LI2010; match to protein family HMM PF02588 YP_014532.1 identified by match to protein family HMM PF01266 YP_014533.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_014534.1 identified by similarity to GP:16411365; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_014536.1 identified by match to protein family HMM PF00563 YP_014537.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate YP_014538.1 identified by similarity to GP:16266764; match to protein family HMM PF00144 YP_014539.1 identified by similarity to SP:P09373; match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255 YP_014540.1 identified by similarity to OMNI:NTL01LI2019; match to protein family HMM PF03486; match to protein family HMM TIGR00275 YP_014541.1 identified by match to protein family HMM PF04298 YP_014544.1 identified by similarity to OMNI:NTL01LI2023; match to protein family HMM PF00515 YP_014545.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_014546.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate YP_014547.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_014548.1 identified by similarity to SP:P19080; match to protein family HMM TIGR01796 YP_014549.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_014550.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_014551.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_014552.1 identified by similarity to SP:P55785; match to protein family HMM PF00348 YP_014553.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone YP_014554.1 identified by similarity to SP:P31112 YP_014555.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_014556.1 identified by similarity to SP:P02346; match to protein family HMM PF00216 YP_014557.1 identified by similarity to SP:Q05918 YP_014558.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_014559.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_014560.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_014561.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_014562.1 identified by similarity to SP:P30363; match to protein family HMM PF00710 YP_014563.1 identified by match to protein family HMM PF01476 YP_014564.1 identified by similarity to SP:P50729; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614 YP_014565.1 identified by similarity to SP:P50728 YP_014566.1 identified by similarity to SP:P10245 YP_014567.1 identified by match to protein family HMM TIGR01167; match to protein family HMM TIGR01612 YP_014568.1 identified by similarity to SP:P50726 YP_014569.1 identified by match to protein family HMM PF03061 YP_014570.1 identified by similarity to SP:P35164; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_014571.1 identified by similarity to SP:P35163; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_014572.1 identified by similarity to SP:P35159; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_014573.1 identified by similarity to GP:16414565; match to protein family HMM PF04079; match to protein family HMM TIGR00281 YP_014574.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB YP_014575.1 identified by similarity to SP:P23630; match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_014576.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation YP_014577.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose YP_014578.1 identified by similarity to SP:P21891; match to protein family HMM PF00589; match to protein family HMM PF02899 YP_014579.1 identified by match to protein family HMM PF01475 YP_014580.1 identified by similarity to SP:P49937; match to protein family HMM PF01032 YP_014581.1 identified by similarity to SP:P49936; match to protein family HMM PF01032 YP_014582.1 identified by similarity to SP:P37580; match to protein family HMM PF01497 YP_014583.1 identified by similarity to SP:P49938; match to protein family HMM PF00005 YP_014584.1 identified by match to protein family HMM PF00070 YP_014585.1 identified by match to protein family HMM PF00440 YP_014587.1 identified by match to protein family HMM PF00005 YP_014588.1 identified by match to protein family HMM PF00293 YP_014589.1 identified by similarity to OMNI:NTL01LI2067 YP_014590.1 identified by similarity to GP:2429345 YP_014591.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_014592.1 identified by match to protein family HMM PF00106 YP_014593.1 identified by match to protein family HMM PF00753 YP_014595.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_014598.1 identified by match to protein family HMM PF00583 YP_014599.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_014600.1 identified by similarity to SP:P37251; match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118 YP_014601.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_014602.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_014603.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_014604.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_014605.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_014606.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_014607.1 catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic YP_014608.1 identified by match to protein family HMM PF03306; match to protein family HMM TIGR01252 YP_014609.1 Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway YP_014610.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_014611.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_014612.1 identified by similarity to SP:P39140; match to protein family HMM PF04198 YP_014613.1 identified by match to protein family HMM PF03610; match to protein family HMM TIGR00824 YP_014614.1 identified by similarity to GP:16414620 YP_014615.1 identified by similarity to OMNI:NTL01LI2094; match to protein family HMM PF01380 YP_014616.1 identified by similarity to SP:P08188; match to protein family HMM PF03613 YP_014617.1 identified by similarity to SP:P08187; match to protein family HMM PF03609 YP_014618.1 identified by similarity to SP:P37081; match to protein family HMM PF03830 YP_014619.1 identified by match to protein family HMM PF00392 YP_014620.1 identified by match to protein family HMM PF00392 YP_014622.1 identified by match to protein family HMM PF00248 YP_014623.1 catalyzes the formation of 2-acetolactate from pyruvate in stationary phase YP_014624.1 identified by match to protein family HMM PF01547 YP_014625.1 identified by match to protein family HMM PF00528 YP_014626.1 identified by match to protein family HMM PF00528 YP_014627.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00165 YP_014628.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518 YP_014629.1 identified by match to protein family HMM PF04854 YP_014631.1 identified by match to protein family HMM PF01074 YP_014633.1 identified by similarity to GP:15128487; match to protein family HMM PF01074 YP_014634.1 identified by match to protein family HMM PF00313 YP_014635.1 identified by similarity to OMNI:NTL01LI2112; match to protein family HMM PF01569 YP_014636.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_014637.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme YP_014638.1 identified by similarity to OMNI:NTL01BS01543; match to protein family HMM PF05103 YP_014639.1 identified by match to protein family HMM PF02829 YP_014640.1 identified by similarity to SP:P38033; match to protein family HMM PF00266 YP_014641.1 catalyzes the formation of oxaloacetate from L-aspartate YP_014642.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide YP_014643.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_014644.1 identified by similarity to OMNI:NTL01LL0091 YP_014645.1 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167 YP_014648.1 identified by similarity to GP:6690597 YP_014649.1 identified by similarity to GP:6690597 YP_014650.1 identified by similarity to OMNI:NTL01LM0455 YP_014651.1 identified by similarity to GP:9965182 YP_014652.1 identified by match to protein family HMM PF00440 YP_014653.1 identified by match to protein family HMM PF01479 YP_014654.1 identified by match to protein family HMM PF02325 YP_014655.1 identified by similarity to OMNI:NTL01BH2552; match to protein family HMM PF04472 YP_014656.1 identified by similarity to OMNI:NTL01LI2124; match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_014657.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_014658.1 identified by similarity to SP:P28264; match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_014659.1 identified by match to protein family HMM PF03799 YP_014660.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_014661.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_014662.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_014663.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_014664.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793 YP_014665.1 identified by similarity to SP:Q07867 YP_014666.1 identified by similarity to SP:Q929X6; match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_014667.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_014669.1 identified by match to protein family HMM PF00496 YP_014670.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis YP_014671.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_014672.1 identified by similarity to GP:10175205; match to protein family HMM PF02620 YP_014673.1 identified by match to protein family HMM PF05636 YP_014674.1 identified by similarity to GP:1196907; match to protein family HMM PF00005 YP_014675.1 identified by similarity to OMNI:NTL01LI2144 YP_014676.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_014677.1 identified by similarity to GP:19714972; match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_014680.1 identified by match to protein family HMM PF00188 YP_014681.1 converts protoheme IX and farnesyl diphosphate to heme O YP_014682.1 identified by match to protein family HMM PF02628 YP_014683.1 identified by match to protein family HMM PF00520 YP_014684.1 identified by match to protein family HMM PF03473 YP_014686.1 identified by similarity to SP:P12376; match to protein family HMM PF04234; match to protein family HMM PF05425 YP_014687.1 identified by similarity to OMNI:NTL01LI2156 YP_014688.1 homopentamer; channel that opens in response to pressure or hypoosmotic shock YP_014689.1 identified by similarity to OMNI:NTL01LI2158 YP_014690.1 identified by similarity to OMNI:NTL01LI2159 YP_014691.1 identified by similarity to SP:Q06115; match to protein family HMM PF02275 YP_014692.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_014693.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_014695.1 identified by match to protein family HMM PF02517 YP_014696.1 identified by similarity to OMNI:NTL01LI2163 YP_014697.1 modulates transcription in response to the NADH/NAD(+) redox state YP_014698.1 identified by match to protein family HMM PF00005 YP_014700.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_014701.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_014702.1 identified by similarity to OMNI:NTL01LI2169; match to protein family HMM PF00814 YP_014703.1 identified by similarity to OMNI:NTL01LI2170; match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_014705.1 identified by similarity to OMNI:NTL01LI2172 YP_014706.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_014707.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_014708.1 identified by similarity to OMNI:NTL01LI2175 YP_014709.1 identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167 YP_014710.1 identified by match to protein family HMM PF01381 YP_014711.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_014712.1 identified by match to protein family HMM PF00440 YP_014713.1 identified by similarity to GP:2853612 YP_014714.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_014715.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_014716.1 identified by similarity to SP:P54417; match to protein family HMM PF02028; match to protein family HMM TIGR00842 YP_014718.1 identified by match to protein family HMM PF00596 YP_014719.1 identified by match to protein family HMM PF00294 YP_014720.1 identified by similarity to SP:P37189; match to protein family HMM PF03611 YP_014721.1 identified by similarity to SP:P37188; match to protein family HMM PF02302 YP_014722.1 identified by similarity to SP:P37187; match to protein family HMM PF00359 YP_014723.1 identified by similarity to OMNI:NTL01LI2189; match to protein family HMM PF00874 YP_014724.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_014725.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate YP_014726.1 with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate YP_014727.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta YP_014728.1 identified by similarity to GP:19917531; match to protein family HMM PF04023 YP_014729.1 identified by match to protein family HMM PF02421; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437 YP_014730.1 identified by similarity to GP:16414723 YP_014731.1 identified by match to protein family HMM PF00149 YP_014732.1 identified by match to protein family HMM PF00455 YP_014733.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221 YP_014734.1 identified by match to protein family HMM PF00561 YP_014735.1 identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218 YP_014736.1 identified by similarity to OMNI:SP1710; match to protein family HMM PF00881 YP_014737.1 identified by similarity to GP:16414730 YP_014738.1 identified by similarity to SP:P39645 YP_014739.1 identified by match to protein family HMM PF00005 YP_014740.1 identified by match to protein family HMM PF02687 YP_014741.1 identified by similarity to GP:16414734 YP_014742.1 identified by similarity to OMNI:EF0824; match to protein family HMM PF00583 YP_014743.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_014745.1 identified by similarity to OMNI:NTL01LI2211; match to protein family HMM PF02457; match to protein family HMM TIGR00159 YP_014746.1 identified by match to protein family HMM PF03632; match to protein family HMM PF03633; match to protein family HMM PF03636 YP_014747.1 identified by similarity to OMNI:NTL01LI2213 YP_014748.1 identified by similarity to SP:Q04699; match to protein family HMM PF00528 YP_014749.1 identified by similarity to SP:Q04698; match to protein family HMM PF00528; match to protein family HMM PF05154 YP_014750.1 identified by similarity to SP:P02928; match to protein family HMM PF01547 YP_014751.1 identified by similarity to SP:P38940; match to protein family HMM PF00128; match to protein family HMM PF02903 YP_014752.1 identified by match to protein family HMM PF02517 YP_014753.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_014754.1 identified by similarity to OMNI:NTL01LI2220 YP_014756.1 identified by similarity to OMNI:NTL01LI2222 YP_014757.1 identified by similarity to OMNI:NTL01LI2223 YP_014758.1 identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167 YP_014759.1 identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167 YP_014760.1 identified by match to protein family HMM PF00874; match to protein family HMM TIGR01199 YP_014761.1 identified by match to protein family HMM PF00005 YP_014763.1 identified by match to protein family HMM PF00583 YP_014764.1 identified by similarity to OMNI:NTL01LI2233 YP_014766.1 identified by match to protein family HMM PF00392 YP_014768.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_014769.1 identified by match to protein family HMM PF03601 YP_014771.1 identified by similarity to OMNI:NTL01LI2238; match to protein family HMM PF03819 YP_014773.1 identified by similarity to OMNI:EF0964; match to protein family HMM PF03819 YP_014774.1 identified by similarity to SP:P80579 YP_014775.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_014776.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_014777.1 Catalyzes the rate-limiting step in dNTP synthesis YP_014778.1 identified by similarity to OMNI:NTL01LI2695; match to protein family HMM TIGR01655 YP_014779.1 identified by match to protein family HMM PF00753 YP_014780.1 identified by similarity to SP:P70964; match to protein family HMM PF05532 YP_014781.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_014782.1 identified by similarity to OMNI:NTL01LM2151; match to protein family HMM PF01261 YP_014783.1 identified by similarity to OMNI:NTL01LI2249 YP_014784.1 identified by similarity to OMNI:NTL01LI2250 YP_014785.1 identified by similarity to OMNI:SA0196; match to protein family HMM PF01408; match to protein family HMM PF02894 YP_014786.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_014787.1 identified by similarity to OMNI:NTL01LI2253 YP_014788.1 identified by similarity to OMNI:NTL01LI2254; match to protein family HMM PF00027 YP_014789.1 identified by match to protein family HMM PF00753 YP_014790.1 identified by similarity to SP:Q60003; match to protein family HMM PF00903 YP_014792.1 identified by similarity to OMNI:SP0419; match to protein family HMM PF03060 YP_014793.1 identified by similarity to GP:1235993; match to protein family HMM PF00083 YP_014794.1 identified by similarity to GP:7242549; match to protein family HMM PF01144 YP_014795.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_014796.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_014797.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_014798.1 identified by match to protein family HMM PF00440 YP_014800.1 identified by match to protein family HMM PF00746; match to protein family HMM PF05737; match to protein family HMM PF05738; match to protein family HMM TIGR01167; match to protein family HMM TIGR01612 YP_014801.1 identified by match to protein family HMM PF00746; match to protein family HMM PF05737; match to protein family HMM PF05738; match to protein family HMM TIGR01167; match to protein family HMM TIGR01612 YP_014802.1 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167; match to protein family HMM TIGR01612 YP_014803.1 identified by similarity to OMNI:NTL01LI2269; match to protein family HMM PF05565 YP_014804.1 identified by similarity to GP:16411651 YP_014805.1 identified by similarity to SP:P23878; match to protein family HMM PF00005 YP_014806.1 identified by similarity to SP:P49937; match to protein family HMM PF01032 YP_014807.1 identified by similarity to SP:P40409; match to protein family HMM PF01497 YP_014808.1 identified by similarity to OMNI:NTL01LI2274; match to protein family HMM PF05031 YP_014809.1 identified by similarity to GP:16414802; match to protein family HMM PF05031 YP_014810.1 identified by similarity to OMNI:NTL01LI2276 YP_014811.1 identified by similarity to SP:P54124; match to protein family HMM PF01432; match to protein family HMM TIGR00181 YP_014812.1 identified by similarity to GP:3211759; match to protein family HMM PF06054 YP_014813.1 enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence YP_014814.1 the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress YP_014815.1 identified by similarity to SP:P24137; match to protein family HMM PF00005 YP_014816.1 identified by similarity to SP:P24136; match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_014817.1 identified by similarity to SP:P24139; match to protein family HMM PF00528 YP_014818.1 identified by similarity to SP:P24138; match to protein family HMM PF00528 YP_014819.1 identified by match to protein family HMM PF00496 YP_014821.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_014822.1 identified by match to protein family HMM PF02566 YP_014823.1 identified by match to protein family HMM PF01047 YP_014824.1 identified by similarity to GP:6118425; match to protein family HMM PF00109; match to protein family HMM PF02801 YP_014825.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_014826.1 identified by match to protein family HMM PF01832 YP_014828.1 identified by match to protein family HMM PF00300; match to protein family HMM TIGR01258 YP_014829.1 identified by similarity to SP:Q9RA63; match to protein family HMM PF00004; match to protein family HMM PF02861 YP_014830.1 identified by match to protein family HMM PF01027 YP_014831.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_014832.1 identified by match to protein family HMM PF00583 YP_014833.1 identified by similarity to OMNI:NTL01LI2298 YP_014834.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_014835.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_014836.1 identified by similarity to SP:P38049 YP_014837.1 identified by similarity to SP:P55340; match to protein family HMM PF05975 YP_014838.1 identified by match to protein family HMM PF00005 YP_014839.1 identified by similarity to SP:O07513; match to protein family HMM PF01230 YP_014840.1 identified by similarity to OMNI:NTL01BS01000 YP_014841.1 identified by similarity to OMNI:NTL01LI2306 YP_014842.1 identified by similarity to SP:P24327; match to protein family HMM PF00639 YP_014843.1 catalyzes the exonucleic cleavage of mRNA yielding nucleioside 5'-phosphates YP_014845.1 identified by match to protein family HMM PF00149 YP_014846.1 identified by match to protein family HMM PF06133 YP_014847.1 identified by match to protein family HMM PF04286 YP_014848.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_014850.1 identified by match to protein family HMM PF00005 YP_014852.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_014853.1 identified by similarity to SP:P45947 YP_014854.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_014855.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_014856.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_014857.1 identified by similarity to SP:P42419 YP_014858.1 identified by similarity to SP:P32382; match to protein family HMM PF00070; match to protein family HMM PF00724 YP_014859.1 catalyzes the conversion of shikimate to 3-dehydroshikimate YP_014861.1 identified by match to protein family HMM PF00083 YP_014862.1 identified by similarity to OMNI:NTL01LI2325 YP_014863.1 identified by match to protein family HMM PF00005 YP_014864.1 identified by match to protein family HMM PF00392 YP_014865.1 identified by similarity to SP:P19219; match to protein family HMM PF00165; match to protein family HMM PF02805 YP_014866.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005 YP_014867.1 identified by match to protein family HMM PF00903 YP_014869.1 identified by match to protein family HMM PF00248 YP_014870.1 identified by match to protein family HMM PF01865 YP_014871.1 identified by match to protein family HMM PF01384 YP_014872.1 identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_014873.1 identified by similarity to SP:P27675; match to protein family HMM PF00005 YP_014874.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_014875.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_014876.1 identified by match to protein family HMM PF00860 YP_014877.1 identified by similarity to OMNI:NTL01LI2341 YP_014878.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382 YP_014880.1 identified by similarity to OMNI:NTL01LI2343 YP_014881.1 identified by similarity to SP:P46319; match to protein family HMM PF02255 YP_014882.1 identified by match to protein family HMM PF00583 YP_014883.1 identified by similarity to OMNI:NTL01LI2346; match to protein family HMM PF01883 YP_014885.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_014886.1 identified by similarity to SP:P39803; match to protein family HMM PF02588 YP_014887.1 identified by similarity to OMNI:NTL01LI2350 YP_014888.1 identified by match to protein family HMM PF01557 YP_014889.1 identified by similarity to SP:P23478; match to protein family HMM PF00580; match to protein family HMM TIGR01612 YP_014890.1 identified by similarity to SP:P23477; match to protein family HMM TIGR01612 YP_014892.1 identified by similarity to SP:P40396 YP_014893.1 identified by match to protein family HMM PF01381 YP_014894.1 identified by similarity to SP:P23355; match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427 YP_014895.1 identified by similarity to SP:O31714; match to protein family HMM PF00294 YP_014896.1 identified by match to protein family HMM PF00455 YP_014897.1 identified by similarity to SP:Q56115; match to protein family HMM PF03051 YP_014898.1 identified by match to protein family HMM PF04463 YP_014899.1 identified by match to protein family HMM PF04227 YP_014900.1 identified by match to protein family HMM PF00294 YP_014901.1 identified by similarity to SP:P33918; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_014902.1 identified by similarity to SP:P54950 YP_014903.1 identified by similarity to SP:P37687 YP_014904.1 identified by match to protein family HMM PF00296 YP_014905.1 identified by similarity to SP:O34900; match to protein family HMM PF00005 YP_014906.1 identified by similarity to SP:P54953; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_014907.1 identified by similarity to SP:P76315; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_014908.1 identified by match to protein family HMM PF00497 YP_014909.1 identified by match to protein family HMM PF00583 YP_014910.1 identified by similarity to SP:P80644; match to protein family HMM PF03358 YP_014911.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_014912.1 identified by match to protein family HMM PF00999 YP_014913.1 identified by similarity to OMNI:NTL01BS02949 YP_014914.1 identified by similarity to SP:P21191 YP_014915.1 identified by similarity to OMNI:NTL01LI2433 YP_014917.1 identified by similarity to SP:O35000; match to protein family HMM PF01182 YP_014918.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_014920.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_014922.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR00910 YP_014923.1 identified by similarity to SP:Q928R9; match to protein family HMM PF00282; match to protein family HMM TIGR01788 YP_014924.1 identified by similarity to GP:460083; match to protein family HMM PF07003 YP_014926.1 identified by match to protein family HMM PF00455 YP_014927.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_014928.1 identified by match to protein family HMM PF00293 YP_014929.1 induced by heat shock, salt stress, oxidative stress, glucose limitation and oxygen limitation YP_014930.1 identified by match to protein family HMM PF00155 YP_014931.1 identified by match to protein family HMM PF02687 YP_014932.1 identified by match to protein family HMM PF00005 YP_014933.1 identified by similarity to SP:Q45399; match to protein family HMM PF02302 YP_014934.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive YP_014935.1 identified by similarity to GP:16414996 YP_014936.1 identified by similarity to GP:13936341 YP_014938.1 identified by match to protein family HMM PF00160 YP_014939.1 identified by similarity to SP:P25744; match to protein family HMM PF00083 YP_014940.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_014941.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in the case of S. meliloti it was proved to be involved specifically with K+ transport YP_014942.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_014943.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone YP_014944.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_014945.1 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_014946.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_014947.1 identified by similarity to GP:18266385; match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_014948.1 identified by similarity to OMNI:NTL01LI2468; match to protein family HMM PF02681 YP_014949.1 identified by similarity to OMNI:EF3007 YP_014951.1 identified by similarity to OMNI:NTL01LI2469 YP_014952.1 identified by match to protein family HMM PF00070 YP_014953.1 identified by match to protein family HMM PF00070 YP_014954.1 identified by similarity to OMNI:NTL01BH1523 YP_014955.1 identified by similarity to OMNI:NTL01LI2474 YP_014956.1 identified by similarity to OMNI:NTL01LI2475 YP_014957.1 identified by similarity to OMNI:NTL01LI2476 YP_014959.1 identified by match to protein family HMM PF00560; match to protein family HMM TIGR01167 YP_014960.1 identified by similarity to OMNI:NTL01LI2479; match to protein family HMM PF01106 YP_014961.1 identified by similarity to SP:O32124 YP_014962.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_014963.1 identified by match to protein family HMM PF00583 YP_014964.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01457; match to protein family HMM TIGR01460 YP_014965.1 identified by similarity to OMNI:NTL01LI2484; match to protein family HMM PF06265 YP_014966.1 identified by match to protein family HMM PF00149 YP_014967.1 identified by match to protein family HMM PF01925 YP_014968.1 identified by similarity to OMNI:NTL01LI2487 YP_014969.1 identified by similarity to GP:16415027; match to protein family HMM PF01904 YP_014970.1 identified by similarity to GP:12141272 YP_014971.1 identified by similarity to OMNI:NTL01BH3471; match to protein family HMM PF01458; match to protein family HMM TIGR01980 YP_014972.1 identified by similarity to OMNI:NTL01LI2490; match to protein family HMM PF01592 YP_014973.1 identified by similarity to SP:Q9K7A0; match to protein family HMM PF00266; match to protein family HMM TIGR01979 YP_014974.1 identified by similarity to GP:19747525; match to protein family HMM PF01458; match to protein family HMM TIGR01981 YP_014975.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978 YP_014976.1 identified by similarity to OMNI:NTL01LI2494 YP_014977.1 identified by match to protein family HMM PF03180 YP_014978.1 identified by match to protein family HMM PF00528 YP_014979.1 identified by match to protein family HMM PF00005 YP_014981.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_014982.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_014983.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_014984.1 identified by similarity to SP:P06544 YP_014985.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_014986.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617 YP_014987.1 identified by match to protein family HMM PF01098 YP_014988.1 identified by match to protein family HMM PF01098 YP_014989.1 identified by similarity to SP:P49938; match to protein family HMM PF00005 YP_014990.1 identified by similarity to GP:5006425; match to protein family HMM PF01032 YP_014991.1 identified by similarity to SP:P37580; match to protein family HMM PF01497 YP_014992.1 identified by similarity to OMNI:NTL01LI2509 YP_014993.1 identified by similarity to GP:15963430; match to protein family HMM PF00756 YP_014994.1 identified by similarity to SP:Q8Y4K4; match to protein family HMM PF00282; match to protein family HMM TIGR01788 YP_014995.1 identified by similarity to OMNI:NTL01LI2512 YP_014996.1 identified by similarity to SP:P39805; match to protein family HMM PF00874; match to protein family HMM PF03123 YP_014998.1 identified by similarity to OMNI:NTL01LI2514 YP_014999.1 identified by similarity to OMNI:NTL01LI2515 YP_015000.1 identified by similarity to GP:16415055; match to protein family HMM TIGR01655 YP_015001.1 identified by similarity to OMNI:NTL01LI2517 YP_015002.1 identified by similarity to OMNI:NTL01LI2518 YP_015003.1 identified by similarity to OMNI:NTL01LI2519 YP_015005.1 identified by match to protein family HMM PF00560 YP_015006.1 identified by match to protein family HMM PF01055; match to protein family HMM PF03422; match to protein family HMM TIGR01612 YP_015007.1 identified by match to protein family HMM PF00560 YP_015008.1 identified by match to protein family HMM PF01055; match to protein family HMM PF03422; match to protein family HMM TIGR01612 YP_015009.1 identified by match to protein family HMM PF01381; match to protein family HMM TIGR01716 YP_015010.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_015011.1 identified by similarity to SP:P21499; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 YP_015012.1 identified by similarity to SP:Q06174 YP_015013.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_015014.1 identified by similarity to SP:Q06174 YP_015015.1 identified by similarity to OMNI:NTL01LI2530 YP_015016.1 identified by similarity to OMNI:NTL01LI2531 YP_015017.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_015018.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_015019.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_015020.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_015021.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate YP_015022.1 identified by match to protein family HMM PF04198 YP_015023.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_015024.1 identified by match to protein family HMM PF01244 YP_015025.1 identified by match to protein family HMM PF00440 YP_015026.1 identified by similarity to OMNI:NTL01LI2542 YP_015027.1 identified by similarity to OMNI:NTL01LI2543 YP_015028.1 identified by similarity to GP:3308998; match to protein family HMM PF00041; match to protein family HMM PF02839; match to protein family HMM PF03067 YP_015029.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_015030.1 identified by match to protein family HMM PF00324 YP_015031.1 identified by match to protein family HMM PF00560 YP_015032.1 catalyzes the reduction of alpha, beta-unsaturated aldehydes and ketones; reduces the nitro group nitroester and nitroaromatic compounds YP_015033.1 identified by similarity to OMNI:NTL01BS03470; match to protein family HMM PF02650; match to protein family HMM TIGR00647 YP_015034.1 identified by similarity to SP:Q928C0; match to protein family HMM PF01933; match to protein family HMM TIGR01826 YP_015035.1 identified by match to protein family HMM PF03668 YP_015036.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; match to protein family HMM TIGR01369 YP_015037.1 identified by similarity to SP:P05149; match to protein family HMM PF01263 YP_015038.1 identified by match to protein family HMM PF01370; match to protein family HMM TIGR01179 YP_015039.1 identified by match to protein family HMM PF00070; match to protein family HMM TIGR01292 YP_015040.1 identified by match to protein family HMM PF00515 YP_015041.1 identified by match to protein family HMM PF00132 YP_015042.1 hydrolyzes pyrophosphate formed during serine-46-phosphorylated HPr dephosphorylation YP_015043.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_015044.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_015045.1 identified by match to protein family HMM PF04020 YP_015046.1 identified by similarity to OMNI:NTL01LI2612; match to protein family HMM PF04024 YP_015047.1 identified by similarity to OMNI:NTL01LI2612; match to protein family HMM PF04024 YP_015048.1 identified by similarity to OMNI:NTL01LI2613 YP_015049.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_015050.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_015051.1 identified by similarity to OMNI:NTL01LI2616 YP_015052.1 identified by similarity to OMNI:NTL01LI2617 YP_015053.1 identified by similarity to OMNI:NTL01LI2618 YP_015054.1 identified by match to protein family HMM PF01022 YP_015055.1 identified by similarity to SP:Q9X4T4; match to protein family HMM PF01895 YP_015056.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_015057.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_015058.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_015059.1 identified by similarity to SP:Q58420; match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_015060.1 identified by match to protein family HMM PF01547 YP_015061.1 identified by similarity to OMNI:NTL01LI2626; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_015062.1 identified by similarity to SP:P13792; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_015063.1 identified by similarity to OMNI:NTL01LI2628 YP_015064.1 identified by similarity to SP:O66043; match to protein family HMM PF00614 YP_015065.1 identified by match to protein family HMM PF01551 YP_015066.1 identified by match to protein family HMM PF00877 YP_015067.1 identified by similarity to SP:O34876; match to protein family HMM PF02687 YP_015068.1 identified by similarity to SP:P10115; match to protein family HMM PF00005 YP_015069.1 identified by similarity to OMNI:NTL01LI2634; match to protein family HMM PF02588 YP_015070.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1 YP_015071.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_015072.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_015073.1 identified by similarity to SP:P39147 YP_015074.1 identified by similarity to SP:P39145; match to protein family HMM PF00271 YP_015075.1 identified by similarity to OMNI:NTL01LI2640; match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_015076.1 identified by similarity to SP:P13800; match to protein family HMM PF00072; match to protein family HMM PF00196 YP_015077.1 identified by similarity to OMNI:NTL01LI2642; match to protein family HMM PF01205; match to protein family HMM TIGR00257 YP_015078.1 identified by similarity to OMNI:EF3079; match to protein family HMM PF00583 YP_015079.1 identified by similarity to SP:Q02115; match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_015080.1 identified by match to protein family HMM PF00953 YP_015081.1 identified by similarity to GP:9955592; match to protein family HMM PF01188; match to protein family HMM PF02746; match to protein family HMM TIGR01928 YP_015082.1 identified by similarity to SP:P27620; match to protein family HMM PF03808; match to protein family HMM TIGR00696 YP_015083.1 identified by similarity to OMNI:NTL01LI2648; match to protein family HMM PF01476 YP_015084.1 identified by similarity to SP:P37455; match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_015085.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_015086.1 identified by similarity to SP:P39751; match to protein family HMM TIGR00904 YP_015087.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_015088.1 identified by similarity to OMNI:NTL01LI2653 YP_015089.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_015090.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_015091.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_015092.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_015093.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_015094.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_015095.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_015096.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_015097.1 identified by similarity to SP:P37816; match to protein family HMM PF05468 YP_015098.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_015099.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_015100.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_015101.1 identified by match to protein family HMM PF01451 YP_015102.1 identified by similarity to OMNI:NTL01LI2667; match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057 YP_015103.1 identified by similarity to OMNI:NTL01LI2668; match to protein family HMM TIGR00536 YP_015104.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_015105.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_015106.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_015107.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_015108.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_015109.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_015110.1 identified by similarity to SP:Q9ZH29; match to protein family HMM PF04138 YP_015111.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_015112.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_015113.1 identified by similarity to OMNI:NTL01LI2680; match to protein family HMM PF03706; match to protein family HMM TIGR00374 YP_015114.1 identified by similarity to OMNI:SP1075; match to protein family HMM PF00534 YP_015115.1 identified by match to protein family HMM PF00534 YP_015116.1 identified by similarity to SP:P42420; match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859 YP_015117.1 similar to YegS from E. coli YP_015118.1 identified by match to protein family HMM PF01510 YP_015119.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_015120.1 participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling YP_015121.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_015122.1 identified by similarity to OMNI:SA0662 YP_015123.1 identified by similarity to OMNI:NTL01LI2690; match to protein family HMM PF02163 YP_015124.1 identified by similarity to SP:Q01468; match to protein family HMM PF01361; match to protein family HMM TIGR00013 YP_015125.1 identified by similarity to GP:16415246; match to protein family HMM PF01966 YP_015126.1 identified by match to protein family HMM PF03099 YP_015128.1 identified by similarity to OMNI:NTL01LI2694 YP_015129.1 identified by similarity to OMNI:NTL01LI2695; match to protein family HMM TIGR01655 YP_015130.1 identified by match to protein family HMM PF00496 YP_015131.1 identified by similarity to OMNI:NTL01LI2697 YP_015132.1 identified by similarity to SP:P21369 YP_015133.1 identified by similarity to SP:P45862; match to protein family HMM PF01872 YP_015134.1 identified by match to protein family HMM PF00107 YP_015135.1 identified by similarity to OMNI:NTL01LI2701 YP_015136.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_015137.1 identified by similarity to GP:15023577; match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_015138.1 identified by similarity to GP:16415258; match to protein family HMM PF06028 YP_015139.1 identified by similarity to GP:16415259; match to protein family HMM PF02619; match to protein family HMM PF03992 YP_015140.1 identified by match to protein family HMM PF00005 YP_015141.1 identified by match to protein family HMM PF02687 YP_015142.1 identified by similarity to SP:P23545; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_015143.1 identified by similarity to SP:P13792; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_015144.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth YP_015145.1 identified by similarity to SP:O05396 YP_015146.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591 YP_015147.1 identified by similarity to OMNI:NTL01LI2714; match to protein family HMM PF01887 YP_015148.1 identified by similarity to SP:O35018; match to protein family HMM TIGR00711 YP_015149.1 identified by similarity to SP:O31500; match to protein family HMM PF00440 YP_015151.1 identified by similarity to SP:P50863 YP_015152.1 identified by match to protein family HMM PF01832 YP_015153.1 identified by similarity to SP:Q02198; match to protein family HMM PF00248 YP_015154.1 identified by match to protein family HMM PF00376 YP_015157.1 forms a direct contact with the tRNA during translation YP_015158.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_015159.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_015160.1 identified by match to protein family HMM PF02361 YP_015161.1 with CbiNQ forms the ABC transporter for cobalt import; Bacillus spp. have two adjacent copies of this gene YP_015162.1 with CbiNQ forms the ABC transporter for cobalt import; Bacillus spp. have two adjacent copies of this gene YP_015163.1 identified by match to protein family HMM PF02308 YP_015164.1 identified by match to protein family HMM PF03069 YP_015165.1 identified by similarity to OMNI:NTL01LI2735 YP_015166.1 is a component of the macrolide binding site in the peptidyl transferase center YP_015167.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_015168.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_015169.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_015170.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_015171.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_015172.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_015173.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_015174.1 late assembly protein YP_015175.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_015176.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_015177.1 binds 5S rRNA along with protein L5 and L25 YP_015178.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_015179.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_015180.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif YP_015181.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_015182.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_015183.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_015184.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_015185.1 one of the stabilizing components for the large ribosomal subunit YP_015186.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_015187.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_015188.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_015189.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_015190.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_015191.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_015192.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_015193.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_015194.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_015195.1 identified by match to protein family HMM PF02361 YP_015196.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate YP_015197.1 identified by similarity to SP:P41780; match to protein family HMM PF02424 YP_015199.1 identified by match to protein family HMM PF00070 YP_015200.1 identified by similarity to OMNI:NTL01LI2770 YP_015201.1 identified by similarity to GP:18145889 YP_015202.1 identified by match to protein family HMM PF00348 YP_015203.1 identified by match to protein family HMM PF00149 YP_015204.1 identified by similarity to OMNI:NTL01LI2774 YP_015205.1 identified by similarity to GP:8894743 YP_015206.1 identified by similarity to OMNI:NTL01LI2777 YP_015207.1 identified by match to protein family HMM PF02633 YP_015208.1 identified by match to protein family HMM PF02126 YP_015209.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr YP_015210.1 identified by similarity to OMNI:NTL01BH0223; match to protein family HMM PF02302 YP_015211.1 identified by match to protein family HMM PF00359 YP_015213.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF02302 YP_015215.1 identified by match to protein family HMM PF00005 YP_015219.1 identified by similarity to GP:528976 YP_015220.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_015221.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_015222.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_015223.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_015224.1 dGTPase type 3 subfamily, presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_015225.1 identified by match to protein family HMM PF00583 YP_015226.1 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167 YP_015227.1 identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163 YP_015228.1 identified by match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232 YP_015229.1 identified by match to protein family HMM PF00834 YP_015230.1 identified by similarity to SP:P37351; match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120 YP_015231.1 identified by match to protein family HMM PF00107 YP_015232.1 identified by match to protein family HMM PF00107 YP_015233.1 identified by similarity to SP:P37189; match to protein family HMM PF03611 YP_015234.1 identified by similarity to SP:P37188; match to protein family HMM PF02302 YP_015235.1 identified by match to protein family HMM PF00359 YP_015236.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874 YP_015238.1 identified by similarity to OMNI:NTL01LI2801; match to protein family HMM PF04237 YP_015239.1 identified by match to protein family HMM PF00903 YP_015240.1 identified by match to protein family HMM PF00165 YP_015241.1 identified by match to protein family HMM PF00582 YP_015242.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity YP_015243.1 identified by similarity to GP:10119930 YP_015244.1 identified by match to protein family HMM PF00817 YP_015245.1 identified by match to protein family HMM PF00561 YP_015246.1 identified by similarity to SP:P21866; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_015247.1 identified by similarity to SP:P94608; match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702 YP_015248.1 identified by match to protein family HMM PF02669; match to protein family HMM TIGR00681 YP_015249.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_015250.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_015251.1 identified by similarity to SP:P46318; match to protein family HMM PF02302 YP_015252.1 identified by similarity to SP:P46317; match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_015253.1 identified by similarity to SP:P46319; match to protein family HMM PF02255 YP_015254.1 identified by match to protein family HMM PF01098 YP_015255.1 identified by match to protein family HMM PF01098 YP_015256.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524 YP_015257.1 identified by match to protein family HMM PF00440 YP_015258.1 cell wall hydrolase; muramidase-2 like protein in Enterococcus faecalis; in Enterococcus faecalis a mutant in this gene has no effect on virulence in mouse models; Listeria monocytogenes MurA in involved in general autolysis; contains an N-terminal muramidase domain and C-terminal LysM repeats for cell wall-anchoring YP_015259.1 identified by similarity to OMNI:NTL01LI2821; match to protein family HMM PF06153 YP_015260.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_015261.1 identified by similarity to SP:P37536; match to protein family HMM PF01276 YP_015262.1 with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase YP_015263.1 identified by similarity to SP:P45510; match to protein family HMM PF02734 YP_015264.1 identified by similarity to OMNI:NTL01LI2826; match to protein family HMM PF03610 YP_015265.1 identified by match to protein family HMM PF01418 YP_015266.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_015267.1 identified by match to protein family HMM PF00293 YP_015268.1 identified by match to protein family HMM PF00248 YP_015269.1 identified by similarity to OMNI:NTL01LI2830 YP_015270.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_015271.1 identified by similarity to OMNI:NTL01LI2832; match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_015272.1 identified by similarity to SP:P09122; match to protein family HMM PF00004 YP_015273.1 identified by similarity to OMNI:NTL01LI2834 YP_015274.1 identified by similarity to OMNI:NTL01LI2835 YP_015275.1 identified by similarity to OMNI:NTL01LI2836 YP_015276.1 identified by similarity to SP:P17334; match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_015277.1 identified by similarity to OMNI:NTL01LI2838 YP_015278.1 identified by similarity to OMNI:NTL01LI2839 YP_015280.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_015282.1 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167 YP_015283.1 identified by similarity to SP:P94367; match to protein family HMM PF00005; match to protein family HMM PF00664 YP_015284.1 identified by similarity to SP:P94366; match to protein family HMM PF00005; match to protein family HMM PF00664 YP_015285.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_015286.1 identified by similarity to SP:P94364; match to protein family HMM PF01654 YP_015287.1 identified by match to protein family HMM PF00383 YP_015288.1 identified by similarity to SP:P39062; match to protein family HMM PF00501 YP_015291.1 identified by similarity to GP:17064986 YP_015295.1 identified by similarity to OMNI:NTL01LI0397 YP_015296.1 identified by similarity to SP:O35000; match to protein family HMM PF01182 YP_015297.1 identified by similarity to SP:P39075; match to protein family HMM PF00376 YP_015298.1 identified by match to protein family HMM PF00583 YP_015299.1 identified by similarity to OMNI:NTL01LI2853 YP_015300.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_015301.1 identified by match to protein family HMM PF01047 YP_015303.1 identified by match to protein family HMM PF00376 YP_015305.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_015306.1 identified by similarity to OMNI:NTL01LI2860 YP_015308.1 identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427 YP_015309.1 identified by match to protein family HMM PF01074 YP_015310.1 identified by similarity to SP:P76041; match to protein family HMM PF00128 YP_015311.1 identified by similarity to SP:P23524; match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_015312.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_015313.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_015314.1 Modulates the activities of several enzymes which are inactive in their acetylated form YP_015315.1 identified by similarity to GP:1770137 YP_015316.1 identified by match to protein family HMM PF00083 YP_015317.1 identified by match to protein family HMM PF00018 YP_015318.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_015319.1 identified by similarity to OMNI:NTL01LI2868; match to protein family HMM PF00027 YP_015320.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_015321.1 identified by similarity to OMNI:NTL01LM2735; match to protein family HMM PF04994 YP_015322.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_015323.1 identified by similarity to SP:P80238 YP_015324.1 identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566 YP_015325.1 identified by match to protein family HMM PF00425; match to protein family HMM TIGR00553 YP_015326.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_015327.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_015329.1 identified by match to protein family HMM PF00535 YP_015330.1 identified by similarity to SP:P08750; match to protein family HMM PF00768 YP_015331.1 identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976 YP_015332.1 decatenates replicating daughter chromosomes YP_015333.1 identified by similarity to SP:P15043; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389 YP_015334.1 identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302 YP_015336.1 identified by match to protein family HMM PF01661 YP_015337.1 identified by match to protein family HMM PF00005 YP_015339.1 identified by match to protein family HMM PF00232 YP_015340.1 identified by similarity to SP:P17409; match to protein family HMM PF02302 YP_015341.1 identified by similarity to SP:P17334; match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_015342.1 identified by match to protein family HMM PF00480 YP_015343.1 identified by similarity to SP:P46319; match to protein family HMM PF02255 YP_015344.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_015345.1 identified by similarity to OMNI:NTL01LI2890 YP_015347.1 identified by match to protein family HMM PF00005 YP_015348.1 Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine YP_015349.1 identified by similarity to SP:Q46829; match to protein family HMM PF00232 YP_015350.1 identified by similarity to SP:P40739; match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830 YP_015351.1 identified by similarity to SP:P39805; match to protein family HMM PF00874; match to protein family HMM PF03123 YP_015353.1 identified by match to protein family HMM PF00005 YP_015354.1 identified by match to protein family HMM TIGR01654 YP_015355.1 identified by similarity to GP:3355782; match to protein family HMM TIGR01653 YP_015356.1 identified by match to protein family HMM PF00083; match to protein family HMM TIGR00710 YP_015357.1 identified by similarity to OMNI:NTL01LI2897 YP_015358.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_015359.1 identified by similarity to SP:P46319; match to protein family HMM PF02255 YP_015360.1 identified by similarity to SP:P33363; match to protein family HMM PF00933; match to protein family HMM PF01915 YP_015361.1 identified by similarity to SP:P46318; match to protein family HMM PF02302 YP_015363.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874 YP_015364.1 identified by similarity to SP:P24168; match to protein family HMM PF00199 YP_015365.1 identified by similarity to OMNI:NTL01LI2901; match to protein family HMM PF06107 YP_015366.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_015367.1 identified by similarity to SP:P37522; match to protein family HMM PF00991 YP_015368.1 identified by match to protein family HMM PF01381 YP_015370.1 identified by similarity to SP:P26497; match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_015371.1 identified by similarity to OMNI:NTL01LI2907; match to protein family HMM PF01380; match to protein family HMM PF01418 YP_015372.1 identified by match to protein family HMM PF00480 YP_015373.1 identified by similarity to SP:P32058; match to protein family HMM PF00359 YP_015374.1 identified by similarity to GP:16414878; match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_015375.1 identified by similarity to SP:P50852; match to protein family HMM PF02302; match to protein family HMM PF02378 YP_015376.1 identified by similarity to OMNI:SA0196; match to protein family HMM PF01408; match to protein family HMM PF02894 YP_015377.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate YP_015378.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_015381.1 identified by similarity to OMNI:NTL01LI2915 YP_015382.1 identified by similarity to OMNI:NTL01LI2916 YP_015383.1 identified by similarity to GP:16415478 YP_015384.1 identified by similarity to GP:16415479 YP_015385.1 identified by similarity to GP:16415480 YP_015387.1 identified by match to protein family HMM PF01381 YP_015388.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_015389.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_015390.1 identified by match to protein family HMM PF00768 YP_015391.1 identified by similarity to OMNI:NTL01LI2926 YP_015392.1 identified by match to protein family HMM PF00440 YP_015393.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_015395.1 identified by similarity to SP:P80092; match to protein family HMM PF01546; match to protein family HMM TIGR01891 YP_015396.1 identified by match to protein family HMM PF00083 YP_015397.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891 YP_015398.1 identified by match to protein family HMM PF00165 YP_015399.1 identified by match to protein family HMM PF00560; match to protein family HMM PF00746; match to protein family HMM TIGR01167 YP_015400.1 identified by similarity to OMNI:NTL01LI2934 YP_015401.1 identified by similarity to GP:18143712; match to protein family HMM PF06245 YP_015402.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_015403.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_015404.1 identified by match to protein family HMM PF00083 YP_015405.1 identified by match to protein family HMM PF01047 YP_015406.1 identified by similarity to OMNI:NTL01LI2940 YP_015407.1 identified by similarity to OMNI:NTL01LI2941; match to protein family HMM PF00881 YP_015408.1 identified by match to protein family HMM PF00085 YP_015409.1 identified by similarity to SP:P71447; match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_015410.1 identified by similarity to SP:P23524; match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_015411.1 identified by match to protein family HMM PF03632; match to protein family HMM PF03633; match to protein family HMM PF03636 YP_015412.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_015413.1 identified by similarity to SP:P76044; match to protein family HMM PF01261 YP_015414.1 identified by match to protein family HMM PF00107 YP_015415.1 identified by similarity to SP:P77716; match to protein family HMM PF00528 YP_015416.1 identified by similarity to SP:P77653; match to protein family HMM PF00528 YP_015417.1 identified by match to protein family HMM PF01547 YP_015418.1 identified by similarity to SP:P76041; match to protein family HMM PF00128 YP_015419.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_015420.1 identified by similarity to OMNI:NTL01LI2954 YP_015421.1 identified by match to protein family HMM PF00583 YP_015422.1 identified by match to protein family HMM PF00083 YP_015423.1 identified by similarity to OMNI:NTL01LI2957 YP_015424.1 identified by similarity to SP:P32169; match to protein family HMM PF00596 YP_015425.1 catalyzes the formation of L-rhamnulose from L-rhamnose YP_015426.1 identified by similarity to SP:P32171; match to protein family HMM PF00370 YP_015427.1 identified by similarity to SP:P42417; match to protein family HMM PF00083 YP_015428.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_015429.1 identified by similarity to OMNI:NTL01LI2963; match to protein family HMM PF06171 YP_015430.1 identified by match to protein family HMM PF00013; match to protein family HMM PF01424 YP_015431.1 identified by similarity to SP:Q01625; match to protein family HMM PF02096 YP_015432.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_015433.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_015434.1 identified by similarity to GP:2695687