-- dump date   	20240506_013403
-- class       	Genbank::Contig
-- table       	contig_comment
-- id	comment
NZ_CP006944.1	REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP006944.1.REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC.REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYAREFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biomeREFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not availableREFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitatREFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : SaskatchewanREFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: deadREFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collectedREFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collectedREFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucusREFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animalREFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploidREFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease PathogenREFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing ProjectREFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not availableREFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurusREFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        QuiverREFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000'REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long ReadREFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/10/2024 01:01:07REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/10/2024 01:01:07 Annotation Pipeline               :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/10/2024 01:01:07 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/10/2024 01:01:07 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/10/2024 01:01:07 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/10/2024 01:01:07 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/10/2024 01:01:07 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/10/2024 01:01:07 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,016REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/10/2024 01:01:07 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,016 CDSs (total)                      :: 1,931REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/10/2024 01:01:07 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,016 CDSs (total)                      :: 1,931 Genes (coding)                    :: 1,919REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/10/2024 01:01:07 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,016 CDSs (total)                      :: 1,931 Genes (coding)                    :: 1,919 CDSs (with protein)               :: 1,919REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/10/2024 01:01:07 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,016 CDSs (total)                      :: 1,931 Genes (coding)                    :: 1,919 CDSs (with protein)               :: 1,919 Genes (RNA)                       :: 85REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/10/2024 01:01:07 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,016 CDSs (total)                      :: 1,931 Genes (coding)                    :: 1,919 CDSs (with protein)               :: 1,919 Genes (RNA)                       :: 85 rRNAs                             :: 8, 6, 6 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/10/2024 01:01:07 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,016 CDSs (total)                      :: 1,931 Genes (coding)                    :: 1,919 CDSs (with protein)               :: 1,919 Genes (RNA)                       :: 85 rRNAs                             :: 8, 6, 6 (5S, 16S, 23S) complete rRNAs                    :: 8, 6, 6 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/10/2024 01:01:07 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,016 CDSs (total)                      :: 1,931 Genes (coding)                    :: 1,919 CDSs (with protein)               :: 1,919 Genes (RNA)                       :: 85 rRNAs                             :: 8, 6, 6 (5S, 16S, 23S) complete rRNAs                    :: 8, 6, 6 (5S, 16S, 23S) tRNAs                             :: 61REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/10/2024 01:01:07 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,016 CDSs (total)                      :: 1,931 Genes (coding)                    :: 1,919 CDSs (with protein)               :: 1,919 Genes (RNA)                       :: 85 rRNAs                             :: 8, 6, 6 (5S, 16S, 23S) complete rRNAs                    :: 8, 6, 6 (5S, 16S, 23S) tRNAs                             :: 61 ncRNAs                            :: 4REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/10/2024 01:01:07 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,016 CDSs (total)                      :: 1,931 Genes (coding)                    :: 1,919 CDSs (with protein)               :: 1,919 Genes (RNA)                       :: 85 rRNAs                             :: 8, 6, 6 (5S, 16S, 23S) complete rRNAs                    :: 8, 6, 6 (5S, 16S, 23S) tRNAs                             :: 61 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/10/2024 01:01:07 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,016 CDSs (total)                      :: 1,931 Genes (coding)                    :: 1,919 CDSs (with protein)               :: 1,919 Genes (RNA)                       :: 85 rRNAs                             :: 8, 6, 6 (5S, 16S, 23S) complete rRNAs                    :: 8, 6, 6 (5S, 16S, 23S) tRNAs                             :: 61 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/10/2024 01:01:07 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,016 CDSs (total)                      :: 1,931 Genes (coding)                    :: 1,919 CDSs (with protein)               :: 1,919 Genes (RNA)                       :: 85 rRNAs                             :: 8, 6, 6 (5S, 16S, 23S) complete rRNAs                    :: 8, 6, 6 (5S, 16S, 23S) tRNAs                             :: 61 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/10/2024 01:01:07 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,016 CDSs (total)                      :: 1,931 Genes (coding)                    :: 1,919 CDSs (with protein)               :: 1,919 Genes (RNA)                       :: 85 rRNAs                             :: 8, 6, 6 (5S, 16S, 23S) complete rRNAs                    :: 8, 6, 6 (5S, 16S, 23S) tRNAs                             :: 61 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 6 of 12REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/10/2024 01:01:07 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,016 CDSs (total)                      :: 1,931 Genes (coding)                    :: 1,919 CDSs (with protein)               :: 1,919 Genes (RNA)                       :: 85 rRNAs                             :: 8, 6, 6 (5S, 16S, 23S) complete rRNAs                    :: 8, 6, 6 (5S, 16S, 23S) tRNAs                             :: 61 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 6 of 12 Pseudo Genes (incomplete)         :: 6 of 12REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/10/2024 01:01:07 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,016 CDSs (total)                      :: 1,931 Genes (coding)                    :: 1,919 CDSs (with protein)               :: 1,919 Genes (RNA)                       :: 85 rRNAs                             :: 8, 6, 6 (5S, 16S, 23S) complete rRNAs                    :: 8, 6, 6 (5S, 16S, 23S) tRNAs                             :: 61 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 6 of 12 Pseudo Genes (incomplete)         :: 6 of 12 Pseudo Genes (internal stop)      :: 3 of 12REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/10/2024 01:01:07 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,016 CDSs (total)                      :: 1,931 Genes (coding)                    :: 1,919 CDSs (with protein)               :: 1,919 Genes (RNA)                       :: 85 rRNAs                             :: 8, 6, 6 (5S, 16S, 23S) complete rRNAs                    :: 8, 6, 6 (5S, 16S, 23S) tRNAs                             :: 61 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 6 of 12 Pseudo Genes (incomplete)         :: 6 of 12 Pseudo Genes (internal stop)      :: 3 of 12 Pseudo Genes (multiple problems)  :: 2 of 12REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/10/2024 01:01:07 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,016 CDSs (total)                      :: 1,931 Genes (coding)                    :: 1,919 CDSs (with protein)               :: 1,919 Genes (RNA)                       :: 85 rRNAs                             :: 8, 6, 6 (5S, 16S, 23S) complete rRNAs                    :: 8, 6, 6 (5S, 16S, 23S) tRNAs                             :: 61 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 6 of 12 Pseudo Genes (incomplete)         :: 6 of 12 Pseudo Genes (internal stop)      :: 3 of 12 Pseudo Genes (multiple problems)  :: 2 of 12 CRISPR Arrays                     :: 2REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/10/2024 01:01:07 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,016 CDSs (total)                      :: 1,931 Genes (coding)                    :: 1,919 CDSs (with protein)               :: 1,919 Genes (RNA)                       :: 85 rRNAs                             :: 8, 6, 6 (5S, 16S, 23S) complete rRNAs                    :: 8, 6, 6 (5S, 16S, 23S) tRNAs                             :: 61 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 6 of 12 Pseudo Genes (incomplete)         :: 6 of 12 Pseudo Genes (internal stop)      :: 3 of 12 Pseudo Genes (multiple problems)  :: 2 of 12 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP006944.1. Bacteria available from MARC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS:3.0-Data-START## annot_source        :: DIYA biome               :: terrestrial biome collection_date     :: 2003 env_package         :: Not available estimated_size      :: 2500000 feature             :: livestock-associated habitat finishing_strategy  :: complete: 11X coverage: reads >= 11000 geo_loc_name        :: Canada : Saskatchewan health_disease_stat :: dead investigation_type  :: bacteria_archaea isol_growth_condt   :: Not collected lat_lon             :: Not collected material            :: mucus num_replicons       :: 1 pathogenicity       :: animal ploidy              :: haploid project_name        :: USMARC Bovine Respiratory Disease Pathogen                        Sequencing Project ref_biomaterial     :: Not available seq_meth            :: PacBio C2 P4 specific_host       :: Bos taurus assembly            :: Celera 7.0 : Consensus accuracy of 99.993% :                        Quiver ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: Celera v. 7.0 Genome Coverage       :: 'complete : 12X coverage : reads >= 11000' Sequencing Technology :: PacBio C2 P4 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/10/2024 01:01:07 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,016 CDSs (total)                      :: 1,931 Genes (coding)                    :: 1,919 CDSs (with protein)               :: 1,919 Genes (RNA)                       :: 85 rRNAs                             :: 8, 6, 6 (5S, 16S, 23S) complete rRNAs                    :: 8, 6, 6 (5S, 16S, 23S) tRNAs                             :: 61 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 6 of 12 Pseudo Genes (incomplete)         :: 6 of 12 Pseudo Genes (internal stop)      :: 3 of 12 Pseudo Genes (multiple problems)  :: 2 of 12 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## COMPLETENESS: full length.