-- dump date 20240506_025627 -- class Genbank::Contig -- table contig_comment -- id comment NZ_CP022957.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP022957.1.REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu.REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available.REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (PacificREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA)REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sedimentREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collectedREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic OceanREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sedimentREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic OceanREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?CREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 WREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: SedimentREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genomeREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencingREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platformREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, PhylumREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, ClassREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, OrderREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, FamilyREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, GenusREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species MaribacterREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltiduransREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: NegativeREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: RodsREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motileREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobicREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-livingREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reportedREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 mREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bpREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kitREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 readsREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocolREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA)REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBioREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assemblyREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver softwareREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average referenceREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus)REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP AssemblyREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scoresREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (oneREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome)REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRTREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: FullREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: YesREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0xREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBioREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/21/2023 02:38:56REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/21/2023 02:38:56 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/21/2023 02:38:56 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/21/2023 02:38:56 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/21/2023 02:38:56 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/21/2023 02:38:56 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/21/2023 02:38:56 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/21/2023 02:38:56 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,145REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/21/2023 02:38:56 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,145 CDSs (total) :: 4,095REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/21/2023 02:38:56 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,145 CDSs (total) :: 4,095 Genes (coding) :: 4,072REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/21/2023 02:38:56 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,145 CDSs (total) :: 4,095 Genes (coding) :: 4,072 CDSs (with protein) :: 4,072REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/21/2023 02:38:56 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,145 CDSs (total) :: 4,095 Genes (coding) :: 4,072 CDSs (with protein) :: 4,072 Genes (RNA) :: 50REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/21/2023 02:38:56 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,145 CDSs (total) :: 4,095 Genes (coding) :: 4,072 CDSs (with protein) :: 4,072 Genes (RNA) :: 50 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/21/2023 02:38:56 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,145 CDSs (total) :: 4,095 Genes (coding) :: 4,072 CDSs (with protein) :: 4,072 Genes (RNA) :: 50 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/21/2023 02:38:56 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,145 CDSs (total) :: 4,095 Genes (coding) :: 4,072 CDSs (with protein) :: 4,072 Genes (RNA) :: 50 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 40REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/21/2023 02:38:56 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,145 CDSs (total) :: 4,095 Genes (coding) :: 4,072 CDSs (with protein) :: 4,072 Genes (RNA) :: 50 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 40 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/21/2023 02:38:56 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,145 CDSs (total) :: 4,095 Genes (coding) :: 4,072 CDSs (with protein) :: 4,072 Genes (RNA) :: 50 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 40 ncRNAs :: 4 Pseudo Genes (total) :: 23REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/21/2023 02:38:56 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,145 CDSs (total) :: 4,095 Genes (coding) :: 4,072 CDSs (with protein) :: 4,072 Genes (RNA) :: 50 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 40 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/21/2023 02:38:56 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,145 CDSs (total) :: 4,095 Genes (coding) :: 4,072 CDSs (with protein) :: 4,072 Genes (RNA) :: 50 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 40 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/21/2023 02:38:56 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,145 CDSs (total) :: 4,095 Genes (coding) :: 4,072 CDSs (with protein) :: 4,072 Genes (RNA) :: 50 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 40 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 10 of 23REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/21/2023 02:38:56 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,145 CDSs (total) :: 4,095 Genes (coding) :: 4,072 CDSs (with protein) :: 4,072 Genes (RNA) :: 50 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 40 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 10 of 23 Pseudo Genes (incomplete) :: 9 of 23REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/21/2023 02:38:56 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,145 CDSs (total) :: 4,095 Genes (coding) :: 4,072 CDSs (with protein) :: 4,072 Genes (RNA) :: 50 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 40 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 10 of 23 Pseudo Genes (incomplete) :: 9 of 23 Pseudo Genes (internal stop) :: 6 of 23REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/21/2023 02:38:56 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,145 CDSs (total) :: 4,095 Genes (coding) :: 4,072 CDSs (with protein) :: 4,072 Genes (RNA) :: 50 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 40 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 10 of 23 Pseudo Genes (incomplete) :: 9 of 23 Pseudo Genes (internal stop) :: 6 of 23 Pseudo Genes (multiple problems) :: 2 of 23REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/21/2023 02:38:56 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,145 CDSs (total) :: 4,095 Genes (coding) :: 4,072 CDSs (with protein) :: 4,072 Genes (RNA) :: 50 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 40 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 10 of 23 Pseudo Genes (incomplete) :: 9 of 23 Pseudo Genes (internal stop) :: 6 of 23 Pseudo Genes (multiple problems) :: 2 of 23 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP022957.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Xue-Wei Xu. This genome has a base modification file available. ##MIGS:3.0-Data-START## assembly :: HGAP Assembly version 2 (Pacific Biosciences, USA) biome :: Marine sediment collection_date :: Mar-2012 env_package :: Deep-sea sediment sample collected from South Atlantic Ocean feature :: Deep-sea sediment geo_loc_name :: South Atlantic Ocean investigation_type :: bacteria_archaea isol_growth_condt :: MB medium at 30?C lat_lon :: 14.72 S 13.46 W material :: Sediment project_name :: Maribacter cobaltidurans B1 genome sequencing seq_meth :: A pacbio RS II platform Classification :: Domain Bacteria, Phylum Bacteroidetes, Class Flavobacteriia, Order Flavobacteriales, Family Flavobacteriaceae, Genus Maribacter, Species Maribacter cobaltidurans Gram stain :: Negative Cell shape :: Rods Motility :: Non-motile Temperature optimum (?C) :: 30 pH optimum :: 7 NaCl optimum (%) :: 1.0-2.0 Relationship to oxygen :: Strictly aerobic Observed biotic relationship :: Free-living Known pathogenicity :: Not reported Submitted to INSDC :: Accession number CP022957 Geographic location (depth) :: 2819 m ref_biomaterial :: PMID: 29087269 num_replicons :: 1 Estimated size :: 4,639,957 bp Nucleic acid extraction :: Qiagen DNA extraction kit Library reads sequenced :: 40,910 reads Library construction method :: The large smrtbell gdna protocol (Pacific Biosciences, USA) Assembly method :: De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software Estimated error rate :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality scores finishing_strategy :: Complete, 121x, 1 contigs (one chromosome) ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date :: 10-JUL-2017 Assembly Method :: SMRT PORTAL v. Jul-2017 Assembly Name :: MARB1_SMRT Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/21/2023 02:38:56 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,145 CDSs (total) :: 4,095 Genes (coding) :: 4,072 CDSs (with protein) :: 4,072 Genes (RNA) :: 50 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 40 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 10 of 23 Pseudo Genes (incomplete) :: 9 of 23 Pseudo Genes (internal stop) :: 6 of 23 Pseudo Genes (multiple problems) :: 2 of 23 ##Genome-Annotation-Data-END## COMPLETENESS: full length.