-- dump date 20140619_135540 -- class Genbank::CDS -- table cds_note -- id note YP_755235.1 KEGG: mag:amb0636 ATPase; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator, DnaA C-terminal domain; Chromosomal replication initiator, DnaA; SMART: AAA ATPase YP_755236.1 binds the polymerase to DNA and acts as a sliding clamp YP_755237.1 KEGG: mag:amb0638 recombinational DNA repair ATPase; TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; SMART: AAA ATPase YP_755238.1 PFAM: Abortive infection protein; KEGG: sth:STH2474 hypothetical protein YP_755239.1 PFAM: regulatory protein, TetR; KEGG: sdn:Sden_2397 regulatory protein, TetR YP_755240.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: nar:Saro_2775 protein of unknown function DUF404 YP_755241.1 PFAM: protein of unknown function DUF403; KEGG: sme:SMb20887 hypothetical protein YP_755242.1 PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: jan:Jann_2678 transglutaminase-like YP_755243.1 PFAM: 20S proteasome, A and B subunits; KEGG: jan:Jann_2679 20S proteasome, A and B subunits YP_755244.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bur:Bcep18194_B0945 lysine exporter family protein (LysE/YggA) YP_755245.1 PFAM: glycosyl transferase, family 2; KEGG: gox:GOX1109 dolichol-phosphate mannosyltransferase YP_755246.1 PFAM: glycosyl transferase, family 39; KEGG: bja:blr4440 hypothetical protein YP_755247.1 KEGG: ccr:CC1538 hypothetical protein YP_755248.1 negatively supercoils closed circular double-stranded DNA YP_755250.1 KEGG: ccr:CC3464 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2 YP_755252.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: ccr:CC3688 prolyl oligopeptidase family protein YP_755253.1 PFAM: diaminopimelate epimerase; KEGG: ccr:CC3686 diaminopimelate epimerase YP_755254.1 KEGG: ade:Adeh_3441 hypothetical protein YP_755256.1 KEGG: ccr:CC0125 hypothetical protein YP_755257.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: eli:ELI_04405 putative outer membrane receptor protein YP_755258.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: eli:ELI_01480 3-hydroxyacyl-CoA dehydrogenase YP_755259.1 PFAM: peptidase T2, asparaginase 2; KEGG: ccr:CC0097 asparaginase family protein YP_755260.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: rru:Rru_A3372 tRNA/rRNA methyltransferase (SpoU) YP_755261.1 KEGG: bmb:BruAb1_0078 hypothetical protein YP_755262.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: ccr:CC0134 hypothetical protein YP_755263.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pae:PA1472 hypothetical protein YP_755265.1 PFAM: chemotaxis sensory transducer; KEGG: rru:Rru_A2146 chemotaxis sensory transducer YP_755266.1 KEGG: ccr:CC1026 hypothetical protein YP_755267.1 PFAM: Creatininase; KEGG: reu:Reut_B5123 creatininase YP_755268.1 KEGG: cgb:cg1702 hypothetical protein YP_755270.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: xcb:XC_1012 hypothetical protein YP_755271.1 PFAM: YCII-related; KEGG: bmb:BruAb1_1867 hypothetical protein YP_755272.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_755273.1 KEGG: mlo:mlr4224 O-sialoglycoprotein endopeptidase (gcp); TIGRFAM: putative metalloendopeptidase, glycoprotease family; PFAM: peptidase M22, glycoprotease YP_755274.1 KEGG: rsp:RSP_0679 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase YP_755275.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: mag:amb4421 uroporphyrinogen-III synthase YP_755276.1 KEGG: rru:Rru_A3567 uroporphyrinogen III synthase HEM4 YP_755277.1 PFAM: HemY domain protein; Tetratricopeptide TPR_4; KEGG: ccr:CC0075 hypothetical protein YP_755278.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: sth:STH1046 uridine kinase YP_755279.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: bxe:Bxe_A1834 putative glutathione S-transferase YP_755280.1 KEGG: eli:ELI_14360 putative secreted protein YP_755281.1 PFAM: protein of unknown function DUF305; KEGG: eli:ELI_14360 putative secreted protein YP_755282.1 TIGRFAM: bacterioferritin; PFAM: Rubrerythrin; Ferritin, Dps family protein; KEGG: mca:MCA0762 bacterioferritin YP_755283.1 PFAM: protein of unknown function DUF124; KEGG: ccr:CC1115 hypothetical protein YP_755284.1 KEGG: dar:Daro_2048 PAS:GGDEF YP_755285.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: nar:Saro_3300 methenyltetrahydrofolate cyclohydrolase YP_755286.1 PFAM: protein of unknown function DUF167; KEGG: atc:AGR_C_4821 hypothetical protein YP_755287.1 PFAM: protein of unknown function YGGT; KEGG: rpa:RPA0415 family of unknown function YGGT YP_755288.1 PFAM: response regulator receiver; KEGG: dra:DR0408 response regulator YP_755289.1 PFAM: helix-turn-helix domain protein YP_755290.1 KEGG: ccr:CC0232 hypothetical protein YP_755291.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction YP_755292.1 KEGG: sde:Sde_3139 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB YP_755293.1 PFAM: VanZ family protein; KEGG: eba:ebA5942 hypothetical protein, INTERPRO suggestion: probable VanZ like protein YP_755294.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: eli:ELI_11105 hypothetical protein YP_755295.1 PFAM: peptidase S41; KEGG: gvi:glr2547 similar to interphotoreceptor retinoid-binding protein YP_755296.1 KEGG: rsp:RSP_3683 possible FemAB family protein YP_755297.1 PFAM: protein of unknown function DUF1486; KEGG: noc:Noc_2954 hypothetical protein YP_755299.1 PFAM: regulatory protein, ArsR; KEGG: dge:Dgeo_1314 transcriptional regulator, ArsR family YP_755301.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ccr:CC0188 ABC transporter, ATP-binding protein YP_755302.1 KEGG: ccr:CC0189 hypothetical protein YP_755303.1 TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: noc:Noc_2446 sodium/sulphate symporter YP_755305.1 KEGG: afu:AF2162 hypothetical protein YP_755306.1 PFAM: protein of unknown function DUF1214; KEGG: nar:Saro_2218 protein of unknown function DUF1214 YP_755307.1 KEGG: ccr:CC0236 hypothetical protein YP_755308.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ccr:CC0237 DNA-binding response regulator YP_755309.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: ccr:CC0238 sensor histidine kinase YP_755310.1 PFAM: PTS system fructose subfamily IIA component; KEGG: bmb:BruAb1_2069 PTS system, IIA component YP_755311.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: rpb:RPB_0467 HPrNtr YP_755312.1 KEGG: afm:Afu2g17000 hypothetical protein YP_755313.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xoo:XOO0390 TonB-like protein YP_755314.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: ccr:CC3484 tyrosine kinase DivL YP_755315.1 PFAM: ferredoxin; KEGG: ccr:CC3524 ferredoxin, 2Fe-2S YP_755316.1 PFAM: protein of unknown function UPF0079; KEGG: ccr:CC3534 hypothetical protein YP_755317.1 PFAM: aminoglycoside phosphotransferase; KEGG: ccr:CC3535 hypothetical protein YP_755318.1 PFAM: Nucleotidyl transferase; KEGG: ccr:CC3536 nucleotidyltransferase family protein YP_755319.1 KEGG: ccr:CC3537 hypothetical protein YP_755320.1 PFAM: UvrD/REP helicase; KEGG: ccr:CC3538 helicase, UvrD/Rep family YP_755321.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: rru:Rru_A3433 thioredoxin YP_755322.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: ccr:CC3541 bifunctional protein (dihydrofolate synthase / folylpolyglutamate synthase) YP_755323.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: ccr:CC3542 acetyl-CoA carboxylase, carboxyl transferase beta subunit YP_755324.1 KEGG: nwi:Nwi_0054 tryptophan synthase subunit alpha; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase, alpha chain YP_755325.1 KEGG: noc:Noc_0692 hypothetical protein YP_755326.1 PFAM: protein of unknown function DUF497; KEGG: stm:STM4528 putative inner membrane protein YP_755327.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_755328.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: sme:SMc02767 N-(5'-phosphoribosyl)anthranilate isomerase YP_755329.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mlo:mll4929 transcriptional regulator YP_755330.1 KEGG: ilo:IL0280 hypothetical protein YP_755331.1 TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: nwi:Nwi_0058 integration host factor beta subunit YP_755332.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_755333.1 KEGG: rsp:RSP_3591 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region YP_755334.1 KEGG: rpa:RPA0061 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YP_755335.1 TIGRFAM: conserved hypothetical protein; KEGG: ccr:CC3590 hypothetical protein YP_755336.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO4139 hypothetical protein YP_755337.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: mag:amb3938 phosphotransferase system mannitol/fructose-specific IIA domain YP_755338.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: ccr:CC3597 ribosomal subunit interface protein YP_755339.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_755340.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ccr:CC3600 ABC transporter, ATP-binding protein YP_755341.1 PFAM: OstA family protein; KEGG: ccr:CC3601 hypothetical protein YP_755342.1 KEGG: ccr:CC1168 hypothetical protein YP_755343.1 PFAM: 3'-5' exonuclease; KEGG: ccr:CC3603 ribonuclease D, putative YP_755344.1 KEGG: mag:amb0154 hypothetical protein YP_755345.1 PFAM: membrane bound O-acyl transferase, MBOAT family protein; KEGG: dar:Daro_2421 membrane bound O-acyl transferase, MBOAT YP_755347.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: ccr:CC3604 NADH-ubiquinone oxidoreductase 39 kDa subunit precursor, putative YP_755348.1 PFAM: Abortive infection protein; KEGG: tfu:Tfu_1444 hypothetical protein YP_755349.1 PFAM: Bacitracin resistance protein BacA; KEGG: sil:SPO3771 undecaprenyl-diphosphatase YP_755350.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: ccr:CC3641 cation efflux family protein YP_755351.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: ccr:CC3639 glutathione S-transferase family protein YP_755352.1 TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: HEAT domain containing protein; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: bms:BRA1045 iron-sulfur cluster-binding protein, putative YP_755353.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: gsu:GSU1643 GGDEF/response regulator receiver domain protein YP_755354.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: rru:Rru_A3379 TPR repeat YP_755355.1 PFAM: glycosyl transferase, group 1; KEGG: mag:amb0338 glycosyltransferase YP_755356.1 PFAM: glycosyl transferase, family 9; KEGG: ccr:CC1051 heptosyltransferase family protein YP_755357.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: ccr:CC1049 translation initiation factor IF-3 YP_755358.1 PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: ccr:CC0403 transporter, putative YP_755359.1 KEGG: jan:Jann_1061 peptidase S1 and S6, chymotrypsin/Hap YP_755360.1 KEGG: jan:Jann_1062 peptidase S1 and S6, chymotrypsin/Hap YP_755361.1 KEGG: xcb:XC_0266 hypothetical protein YP_755362.1 PFAM: ribosomal protein L35; KEGG: sil:SPO3599 ribosomal protein L35 YP_755363.1 TIGRFAM: ribosomal protein L20; KEGG: sil:SPO3598 ribosomal protein L20 YP_755364.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_755365.1 KEGG: sdn:Sden_0777 hypothetical protein YP_755366.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_755367.1 PFAM: protein of unknown function DUF925; KEGG: mlo:mll5052 hypothetical protein YP_755368.1 PFAM: Peptidoglycan-binding domain 1 protein; Sel1 domain protein repeat-containing protein; KEGG: pcu:pc0714 hypothetical protein YP_755370.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: cation efflux protein; KEGG: bja:bll4927 hypothetical protein YP_755371.1 PFAM: regulatory protein, MerR; KEGG: sil:SPOA0389 transcriptional regulator, MerR family YP_755373.1 PFAM: GCN5-related N-acetyltransferase; KEGG: vch:VC0655 acetyltransferase, putative YP_755374.1 PFAM: Uncharacterised conserved protein UCP033924; KEGG: ccr:CC1035 hypothetical protein YP_755375.1 PFAM: amine oxidase; KEGG: nfa:nfa30780 putative oxidoreductase YP_755376.1 PFAM: peptidase U34, dipeptidase; KEGG: pae:PA4677 hypothetical protein YP_755377.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: cps:CPS_4267 peptidyl-dipeptidase Dcp YP_755378.1 TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: regulatory protein, MerR; KEGG: sil:SPO0314 redox-sensitive transcriptional activator SoxR YP_755379.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sil:SPO0313 glyoxalase family protein YP_755380.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: ath:At4g29890 choline monooxygenase, putative (CMO-like) YP_755381.1 PFAM: amino acid permease-associated region; KEGG: cvi:CV3432 probable amino acid permease YP_755382.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_755383.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: ccr:CC1673 bacterioferritin comigratory protein, putative YP_755384.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_755385.1 KEGG: tcx:Tcr_1353 hypothetical protein YP_755386.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hsa:5723 phosphoserine phosphatase YP_755387.1 KEGG: rsp:RSP_0559 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A YP_755388.1 PFAM: phage integrase family protein; KEGG: rsp:RSP_2361 putative integrase/resolvase recombinase protein phage-related integrase YP_755389.1 PFAM: helix-turn-helix domain protein; KEGG: plu:plu3590 hypothetical protein YP_755393.1 KEGG: rpa:RPA2217 hypothetical protein YP_755394.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; KEGG: sbo:SBO_4158 putative type I restriction enzyme R protein YP_755395.1 PFAM: N-6 DNA methylase; KEGG: sbo:SBO_4159 putative type I restriction enzyme M protein YP_755396.1 PFAM: restriction modification system DNA specificity domain; KEGG: spn:SP0887 type I restriction-modification system, S subunit, putative YP_755398.1 KEGG: bmb:BruAb2_0387 hypothetical protein YP_755399.1 KEGG: rpb:RPB_2979 hypothetical protein YP_755401.1 PFAM: metallophosphoesterase; KEGG: aba:Acid345_1977 metallophosphoesterase YP_755402.1 KEGG: ath:At3g50340 expressed protein YP_755403.1 KEGG: bld:BLi00372 similar to proteins YP_755405.1 PFAM: Methyltransferase type 12; KEGG: ana:alr3730 hypothetical protein YP_755406.1 PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: nar:Saro_1449 resolvase-like YP_755407.1 KEGG: nha:Nham_0797 hypothetical protein YP_755409.1 KEGG: nar:Saro_1506 transposase YP_755410.1 KEGG: hch:HCH_03018 outer membrane protein YP_755411.1 KEGG: vvu:VV20851 hypothetical protein YP_755412.1 KEGG: vpa:VPA0480 putative cation efflux system transmembrane protein YP_755413.1 KEGG: rsp:RSP_2889 transcriptional regulator YP_755414.1 KEGG: sde:Sde_1935 copper-translocating P-type ATPase YP_755415.1 PFAM: amino acid permease-associated region; KEGG: tcx:Tcr_1908 amino acid permease-associated region YP_755416.1 TIGRFAM: pseudoazurin; PFAM: blue (type 1) copper domain protein; KEGG: sme:SMa1243 Azu1 pseudoazurin (blue copper protein) YP_755417.1 PFAM: phosphate-selective porin O and P; KEGG: tbd:Tbd_0706 conserved hypothetical signal peptide protein YP_755418.1 PFAM: cytochrome c, class I; KEGG: tbd:Tbd_0146 probable cytochrome c5 YP_755419.1 KEGG: mag:amb4088 ubiquinol-cytochrome c reductase iron-sulfur subunit; TIGRFAM: Twin-arginine translocation pathway signal; ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein YP_755421.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: pae:PA3613 hypothetical protein YP_755422.1 PFAM: nitrogen regulatory protein P-II; KEGG: pol:Bpro_3498 nitrogen regulatory protein P-II (GlnB, GlnK) YP_755423.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: rpc:RPC_3806 acetate kinase YP_755424.1 Catalyzes the formation of PRPP from ATP and ribose 5-phosphate YP_755425.1 catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine YP_755426.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: nmu:Nmul_A1662 beta-lactamase-like YP_755427.1 KEGG: ade:Adeh_4241 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; SMART: AAA ATPase YP_755428.1 KEGG: dar:Daro_2277 protein-S-isoprenylcysteine methyltransferase YP_755429.1 KEGG: mag:amb2860 hypothetical protein YP_755430.1 KEGG: eli:ELI_04645 hypothetical protein YP_755431.1 PFAM: acyltransferase 3; KEGG: ccr:CC0348 hypothetical protein YP_755433.1 KEGG: nar:Saro_2138 hypothetical protein YP_755434.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: nar:Saro_2928 sigma-24 (FecI-like) YP_755435.1 TIGRFAM: Twin-arginine translocation pathway signal; copper-resistance protein, CopA family; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: nar:Saro_2136 copper-resistance protein CopA YP_755436.1 PFAM: copper resistance B precursor; KEGG: eli:ELI_14375 copper-binding protein, putative YP_755438.1 KEGG: eli:ELI_04625 hypothetical protein YP_755439.1 PFAM: regulatory protein, ArsR; KEGG: bja:bll5773 transcriptional regulatory protein YP_755440.1 PFAM: helix-turn-helix domain protein YP_755441.1 KEGG: eli:ELI_04580 hypothetical protein YP_755442.1 KEGG: hch:HCH_05430 rhodanese-related sulfurtransferase YP_755443.1 PFAM: Patched family protein; KEGG: hch:HCH_05429 predicted exporters of the RND superfamily YP_755444.1 KEGG: hch:HCH_05427 hypothetical protein YP_755445.1 KEGG: hch:HCH_05426 hypothetical protein YP_755446.1 KEGG: nfa:nfa53570 hypothetical protein YP_755447.1 SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: mmc:Mmcs_1434 transcriptional regulator, AraC family YP_755448.1 PFAM: acyltransferase 3; KEGG: mlo:mll7336 acetyltransferase YP_755449.1 PFAM: protein of unknown function DUF411; KEGG: sme:SMa1008 hypothetical protein YP_755452.1 PFAM: Integrase, catalytic region; KEGG: nar:Saro_1506 transposase YP_755453.1 KEGG: mpa:MAP1235 hypothetical protein YP_755455.1 PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain; KEGG: mlo:mlr4057 mannitol dehydrogenase YP_755456.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: xcv:XCV0123 TonB-dependent outer membrane receptor YP_755457.1 KEGG: eca:ECA2408 pectin acetylesterase YP_755458.1 PFAM: Carboxylesterase, type B; KEGG: ccr:CC0799 para-nitrobenzyl esterase YP_755459.1 PFAM: PfkB domain protein; KEGG: ccr:CC1496 carbohydrate kinase, pfkB family YP_755460.1 PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: ccr:CC1488 altronate hydrolase YP_755461.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ccr:CC1489 transcriptional regulator, LacI family YP_755462.1 catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism YP_755463.1 PFAM: protein of unknown function DUF1124, sugar phosphate isomerase putative; KEGG: eca:ECA1742 hypothetical protein YP_755464.1 TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ccr:CC1492 2-deoxy-D-gluconate 3-dehydrogenase YP_755465.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ccr:CC1448 DedA family protein YP_755466.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: ccr:CC1447 hypothetical protein YP_755467.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: ccr:CC1446 TRAP dicarboxylate transporter, DctP subunit family YP_755468.1 KEGG: ccr:CC3152 hypothetical protein YP_755469.1 KEGG: ccr:CC1509 2-keto-4-pentenoate hydratase, putative YP_755470.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpc:RPC_4096 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_755471.1 PFAM: regulatory protein, ArsR; KEGG: ccr:CC2864 transcriptional regulator, ArsR family YP_755472.1 SMART: Rhodanese domain protein; KEGG: rpa:RPA2012 hypothetical protein YP_755473.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rpd:RPD_4200 secretion protein HlyD YP_755474.1 PFAM: acriflavin resistance protein; KEGG: rpc:RPC_3221 acriflavin resistance protein YP_755475.1 KEGG: sil:SPO0443 hypothetical protein YP_755476.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ccr:CC0969 transcriptional regulator, LacI family YP_755477.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: nar:Saro_0454 TonB-dependent receptor YP_755478.1 PFAM: glycoside hydrolase, family 16; KEGG: nar:Saro_1608 glucan endo-1,3-beta-D-glucosidase YP_755479.1 PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_3738 hypothetical protein YP_755480.1 PFAM: glycoside hydrolase, family 3 domain protein; KEGG: cps:CPS_3739 periplasmic beta-glucosidase YP_755481.1 TIGRFAM: outer membrane autotransporter barrel domain; KEGG: mlo:mll0950 hypothetical protein YP_755482.1 TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Autotransporter beta- domain protein; KEGG: pfo:Pfl_0160 glycosyl hydrolase, BNR repeat YP_755483.1 KEGG: nar:Saro_1495 transposase YP_755484.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sde:Sde_2991 hypothetical protein YP_755485.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sde:Sde_3287 transcriptional regulator, GntR family YP_755486.1 KEGG: pha:PSHAa1749 alginate lyase precursor YP_755487.1 PFAM: Heparinase II/III family protein; KEGG: sde:Sde_3284 hypothetical protein YP_755488.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: sde:Sde_3283 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) YP_755489.1 PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa1746 putative hexuronate transport protein (MFS family) YP_755490.1 PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: sde:Sde_3281 protein of unknown function DM13 YP_755491.1 PFAM: PfkB domain protein; KEGG: sfx:S4209 ketodeoxygluconokinase YP_755493.1 KEGG: ccr:CC1509 2-keto-4-pentenoate hydratase, putative YP_755494.1 KEGG: mlo:mll0950 hypothetical protein YP_755495.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_C0583 putative short-chain dehydrogenase/reductase YP_755496.1 PFAM: putative RNA methylase; KEGG: sil:SPOA0322 hypothetical protein YP_755497.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: ccr:CC1203 HlyD family secretion protein YP_755498.1 PFAM: acriflavin resistance protein; KEGG: pha:PSHAa2273 AcrB/AcrD/AcrF acriflavin resistance protein YP_755499.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_3023 enoyl-CoA hydratase/isomerase YP_755500.1 KEGG: rru:Rru_A0726 major facilitator superfamily MFS_1 YP_755501.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: ret:RHE_CH03639 putative sensory box/GGDEF family protein (nitrogen fixation positive activator protein-like) YP_755502.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rru:Rru_A0725 cyclopropane-fatty-acyl-phospholipid synthase YP_755503.1 PFAM: protein of unknown function DUF1365; KEGG: atc:AGR_C_3600 hypothetical protein YP_755504.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: atc:AGR_C_3599 hypothetical protein YP_755505.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rru:Rru_A0722 sigma-24 (FecI) YP_755506.1 TIGRFAM: anti-sigma factor, putative, ChrR family; KEGG: rpd:RPD_0339 anti-sigma factor ChrR , putative YP_755507.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ccr:CC2053 transcriptional regulator, LacI family YP_755508.1 PFAM: Hpt domain protein YP_755509.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cvi:CV2645 hypothetical protein YP_755510.1 PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: mag:amb2659 serine phosphatase RsbU YP_755511.1 KEGG: dar:Daro_0110 response regulator receiver YP_755512.1 PFAM: peptidase domain protein; KEGG: jan:Jann_1062 peptidase S1 and S6, chymotrypsin/Hap YP_755513.1 PFAM: amidohydrolase 2; peptidase M19, renal dipeptidase; KEGG: sil:SPO1410 renal dipeptidase family protein YP_755514.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_755515.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: ade:Adeh_1979 3-isopropylmalate dehydratase, small subunit YP_755516.1 TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; KEGG: ade:Adeh_1980 3-isopropylmalate dehydratase, large subunit YP_755517.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_755518.1 PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: xcv:XCV3583 2-isopropylmalate synthase YP_755520.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit YP_755521.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_755522.1 PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: aba:Acid345_3109 dihydroxy-acid dehydratase YP_755523.1 PFAM: protein of unknown function DUF454; KEGG: sil:SPO0005 hypothetical protein YP_755524.1 PFAM: Rh family protein/ammonium transporter; KEGG: pub:SAR11_0818 ammonium transporter YP_755525.1 TIGRFAM: conserved hypothetical protein; KEGG: ccr:CC2658 hypothetical protein YP_755526.1 KEGG: sma:SAV1686 oxidoreductase YP_755527.1 KEGG: ccr:CC3357 hypothetical protein YP_755528.1 PFAM: dihydrodipicolinate synthetase; KEGG: ret:RHE_PC00042 probable dihydrodipicolinate synthetase protein YP_755529.1 PFAM: proline racemase; KEGG: rru:Rru_A2065 proline racemase YP_755531.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rru:Rru_A2063 transcriptional regulator, GntR family YP_755532.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_755533.1 PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: ccr:CC3607 glutamate synthase, large subunit YP_755534.1 PFAM: Inorganic pyrophosphatase; KEGG: ret:RHE_CH03913 pyrophosphate phospho-hydrolase protein YP_755535.1 PFAM: Pyridoxal-dependent decarboxylase; KEGG: bba:Bd2647 decarboxylase, putative YP_755536.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_755537.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: rru:Rru_A1274 radical SAM YP_755538.1 PFAM: NnrS family protein; KEGG: rpc:RPC_1235 NnrS YP_755539.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; amine oxidase; FAD dependent oxidoreductase; KEGG: xcv:XCV2897 phytoene dehydrogenase YP_755540.1 KEGG: rpc:RPC_1998 MaoC-like dehydratase YP_755541.1 PFAM: MaoC domain protein dehydratase; KEGG: pfl:PFL_4601 MaoC-like domain protein YP_755542.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rpb:RPB_4072 AMP-dependent synthetase and ligase YP_755543.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ppu:PP3726 enoyl-CoA hydratase/isomerase family protein YP_755544.1 PFAM: regulatory protein, TetR; KEGG: nar:Saro_3146 transcriptional regulator, TetR family YP_755545.1 PFAM: alpha/beta hydrolase fold; KEGG: bsu:BG12806 similar to arylesterase YP_755546.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: eli:ELI_05030 TonB-dependent receptor YP_755547.1 PFAM: alpha/beta hydrolase fold; KEGG: rsp:RSP_1258 putative hydrolase YP_755548.1 PFAM: Penicillinase repressor; KEGG: sdn:Sden_0578 penicillinase repressor YP_755549.1 KEGG: wsu:WS0602 hypothetical protein YP_755550.1 PFAM: Na+/solute symporter; KEGG: plt:Plut_0486 sodium:solute symporter family protein YP_755551.1 PFAM: protein of unknown function DUF1295; KEGG: nar:Saro_0560 protein of unknown function DUF1295 YP_755552.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: sme:SMc04177 hypothetical protein YP_755560.1 PFAM: PhoH family protein; KEGG: ccr:CC0055 phosphate starvation-inducible protein PhoH, putative YP_755561.1 KEGG: cps:CPS_3337 putative adenylate cyclase YP_755562.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cps:CPS_3337 putative adenylate cyclase YP_755563.1 KEGG: ccr:CC1079 hypothetical protein YP_755564.1 PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; KEGG: ccr:CC1080 transcriptional regulator, LuxR family YP_755565.1 KEGG: cps:CPS_3337 putative adenylate cyclase YP_755566.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_4358 glyoxalase family protein YP_755567.1 KEGG: eli:ELI_06415 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_755568.1 PFAM: regulatory protein, MarR; KEGG: pha:PSHAb0339 putative bacterial regulatory protein, MarR family YP_755569.1 KEGG: ccr:CC2521 sensor histidine kinase/response regulator YP_755570.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: vvy:VV0200 GTP-binding protein TypA YP_755571.1 KEGG: tbd:Tbd_0925 adenine specific DNA methyltransferase YP_755573.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sme:SMc02122 probable ferredoxin--NADP reductase protein YP_755574.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis YP_755575.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: ccr:CC1121 phospho-adenylylsulfate reductase YP_755576.1 PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: ret:RHE_CH01960 sulfite reductase (NADPH) protein YP_755577.1 KEGG: rru:Rru_A1932 hypothetical protein YP_755578.1 TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pst:PSPTO3344 siroheme synthase YP_755579.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ccr:CC1117 transcriptional regulator, LysR family YP_755580.1 KEGG: rpc:RPC_3154 hypothetical protein YP_755581.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bja:blr6742 putative glutamate synthase small subunit YP_755582.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rfr:Rfer_2799 pyruvate flavodoxin/ferredoxin oxidoreductase-like YP_755583.1 catalyzes the coenzyme A-dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin YP_755584.1 PFAM: helix-turn-helix domain protein YP_755585.1 KEGG: pub:SAR11_1181 hypothetical protein YP_755586.1 SMART: helix-turn-helix domain protein YP_755587.1 SMART: helix-turn-helix domain protein YP_755588.1 PFAM: helix-turn-helix domain protein YP_755590.1 PFAM: peptidase M28; KEGG: eli:ELI_12345 hypothetical protein YP_755591.1 PFAM: major facilitator superfamily MFS_1; KEGG: ccr:CC0336 major facilitator family transporter YP_755592.1 PFAM: alpha/beta hydrolase fold; KEGG: ccr:CC3634 hypothetical protein YP_755593.1 PFAM: Phosphoglycerate mutase; KEGG: bfs:BF2273 hypothetical protein YP_755594.1 KEGG: zmo:ZMO1489 3-deoxy-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase YP_755595.1 catalyzes the conversion of N-acetylornithine to N-acetylcitrulline in an alternative arginine biosynthesis pathway YP_755596.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_755597.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_755598.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: glycosyl transferase, family 39; KEGG: ccr:CC0209 hypothetical protein YP_755599.1 KEGG: ilo:IL0583 Oar-like outer membrane protein protein, OmpA family YP_755600.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: ccr:CC0211 hypothetical protein YP_755601.1 PFAM: beta-lactamase; KEGG: xcb:XC_1235 beta-lactamase YP_755602.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ccr:CC0212 hydrolase, carbon-nitrogen family YP_755605.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: eli:ELI_11520 multiple antibiotic transporter YP_755607.1 transforms a conserved lysine residue of initiation factor 5A into deoxyhypusine YP_755608.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: ccr:CC0360 ornithine decarboxylase, putative YP_755609.1 KEGG: cps:CPS_3994 putative lipoprotein YP_755610.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: xcv:XCV0754 TonB-dependent outer membrane receptor YP_755611.1 KEGG: nar:Saro_2654 type II secretion system protein C YP_755612.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: ccr:CC0173 general secretion pathway protein D YP_755613.1 KEGG: xac:XAC0696 type II secretion system protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_755614.1 PFAM: type II secretion system protein; KEGG: xac:XAC0697 type II secretion system protein F YP_755615.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: ccr:CC0176 general secretion pathway protein G YP_755616.1 TIGRFAM: general secretion pathway protein H; Prepilin-type cleavage/methylation-like; KEGG: sdn:Sden_0125 general secretion pathway protein H YP_755617.1 TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: xcv:XCV0761 type II secretory pathway pseudopilin YP_755618.1 TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: ccr:CC0179 general secretion pathway protein J YP_755619.1 PFAM: General secretion pathway protein K; KEGG: xcb:XC_0746 type II secretion system protein K YP_755620.1 PFAM: General secretion pathway L; KEGG: xac:XAC0703 type II secretion system protein L YP_755621.1 PFAM: General secretion pathway M protein; KEGG: ccr:CC0182 general secretion pathway protein M, putative YP_755622.1 PFAM: type II secretion system protein N; KEGG: ccr:CC0183 general secretion pathway protein N, putative YP_755623.1 PFAM: peptidase A24A, prepilin type IV; KEGG: hch:HCH_05280 type II secretory pathway, prepilin signal peptidase PulO and related peptidase YP_755624.1 KEGG: ccr:CC0361 phosphonates ABC transporter, ATP-binding protein; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_755625.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; phosphonate ABC transporter, periplasmic phosphonate-binding protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reu:Reut_B4179 phosphonate uptake transporter YP_755626.1 PFAM: phosphate-selective porin O and P; KEGG: eli:ELI_11870 hypothetical protein YP_755627.1 KEGG: rru:Rru_A0598 phosphate ABC transporter, periplasmic binding protein YP_755628.1 PFAM: glycosyl transferase, group 1; KEGG: ccr:CC3345 glycosyl transferase, group 1 family protein YP_755629.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain YP_755630.1 Catalyzes the rate-limiting step in dNTP synthesis YP_755631.1 KEGG: tbd:Tbd_1279 hypothetical protein YP_755632.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_755633.1 KEGG: sde:Sde_3940 hypothetical protein YP_755635.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: jan:Jann_1555 transcriptional regulator, AraC family YP_755636.1 KEGG: ccr:CC0636 hypothetical protein YP_755637.1 KEGG: ccr:CC0636 hypothetical protein YP_755638.1 catalyzes the 4-phospho-L-aspartate from L-aspartate and the formation of lysine from meso-2,6-diaminoheptanedioate YP_755639.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile YP_755641.1 KEGG: ccr:CC2955 hypothetical protein YP_755642.1 KEGG: ccr:CC2953 para-aminobenzoate synthase, component I; TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein YP_755643.1 PFAM: aminotransferase, class IV; KEGG: ccr:CC2952 4-amino-4-deoxychorismate lyase YP_755644.1 KEGG: ccr:CC2951 hypothetical protein YP_755645.1 PFAM: TadE family protein; KEGG: rpd:RPD_3515 TadE-like YP_755646.1 KEGG: rpc:RPC_3708 hypothetical protein YP_755647.1 PFAM: Flp/Fap pilin component; KEGG: sat:SYN_01488 flp/fap pilin component YP_755648.1 PFAM: peptidase A24A, prepilin type IV; KEGG: ccr:CC2947 prepilin peptidase CpaA YP_755649.1 KEGG: nwi:Nwi_0302 Flp pilus assembly CpaB YP_755650.1 PFAM: type II and III secretion system protein; transport-associated; KEGG: ccr:CC2945 pilus assembly protein CpaC YP_755651.1 TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; KEGG: ccr:CC2944 pilus assembly protein CpaD YP_755652.1 KEGG: ccr:CC2943 pilus assembly protein CpaE YP_755653.1 PFAM: type II secretion system protein E; KEGG: ccr:CC2942 pilus assembly protein CpaF YP_755654.1 PFAM: type II secretion system protein; KEGG: ccr:CC2941 hypothetical protein YP_755655.1 PFAM: type II secretion system protein; KEGG: ccr:CC2940 hypothetical protein YP_755658.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mlo:mll5605 hypothetical protein YP_755659.1 PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: bme:BMEI1948 cytosol aminopeptidase YP_755660.1 PFAM: regulatory protein, MarR; KEGG: rru:Rru_A0139 transcriptional regulator, MarR family YP_755661.1 PFAM: NLP/P60 protein; KEGG: ccr:CC2936 NLP/P60 family protein YP_755662.1 PFAM: cytochrome c, class I; KEGG: eli:ELI_10285 cytochrome c YP_755664.1 PFAM: NUDIX hydrolase; KEGG: ccr:CC0266 MutT/NUDIX family protein YP_755666.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_755667.1 PFAM: conserved hypothetical protein 103; KEGG: atc:AGR_C_145 hypothetical protein YP_755668.1 KEGG: mlo:mlr5510 recombination protein recR; TIGRFAM: recombination protein RecR; PFAM: RecR protein; TOPRIM domain protein; SMART: Toprim sub domain protein YP_755669.1 TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: tma:TM0792 hypothetical protein YP_755670.1 PFAM: glucose sorbosone dehydrogenase; KEGG: eba:ebA6077 predicted glucose/sorbosone dehydrogenase YP_755671.1 KEGG: ccr:CC2278 hypothetical protein YP_755672.1 PFAM: protein of unknown function DUF195; KEGG: hch:HCH_04970 hypothetical protein YP_755673.1 KEGG: ccr:CC0272 polypeptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_755674.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: xac:XAC2880 pirin YP_755675.1 KEGG: son:SO0321 hypothetical protein YP_755676.1 PFAM: proteinase inhibitor I1, Kazal; protease inhibitor, Kazal-type; KEGG: nmu:Nmul_A0845 proteinase inhibitor I1, Kazal YP_755677.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: ccr:CC0279 methionyl-tRNA formyltransferase YP_755678.1 KEGG: nwi:Nwi_3066 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase YP_755679.1 KEGG: bmb:BruAb2_0972 hypothetical membrane protein YP_755680.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_755682.1 PFAM: GCN5-related N-acetyltransferase; KEGG: jan:Jann_1855 GCN5-related N-acetyltransferase YP_755684.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nwi:Nwi_2154 HI0933-like protein YP_755685.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_755686.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; pyrimidine 5'-nucleotidase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bmb:BruAb2_0966 hydrolase, haloacid dehalogenase-like family YP_755687.1 KEGG: rpb:RPB_0679 peptidoglycan-binding domain 1 YP_755688.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_755689.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: rpa:RPA0632 60 kDa inner membrane protein YP_755690.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: ccr:CC0768 ribonuclease P protein component YP_755691.1 KEGG: ccr:CC0529 hypothetical protein YP_755692.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: nha:Nham_3706 histidine kinase YP_755693.1 KEGG: ccr:CC0531 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_755694.1 PFAM: peptidase S58, DmpA; KEGG: ccr:CC2187 hypothetical protein YP_755695.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: bja:bll0096 putative methyl accepting chemotaxis protein YP_755696.1 KEGG: ccr:CC0608 hypothetical protein YP_755698.1 PFAM: major facilitator superfamily MFS_1; KEGG: nha:Nham_2864 twin-arginine translocation pathway signal YP_755699.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: ccr:CC0424 transcriptional regulator, AsnC family YP_755700.1 PFAM: aminotransferase, class V; KEGG: dra:DR0028 aminotransferase, putative YP_755701.1 KEGG: lpp:lpp2620 hypothetical protein YP_755702.1 KEGG: dps:DP1057 hypothetical protein YP_755703.1 PFAM: protein of unknown function DUF819; KEGG: pha:PSHAa1062 inner membrane protein YP_755704.1 PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: ilo:IL0461 secreted zinc metalloproteinase YP_755705.1 PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: sdn:Sden_1089 endothelin-converting enzyme 1 YP_755706.1 PFAM: acriflavin resistance protein; KEGG: hch:HCH_01466 cation/multidrug efflux pump YP_755707.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pha:PSHAa0559 secretion protein YP_755708.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: nmu:Nmul_A1840 RND efflux system, outer membrane lipoprotein, NodT YP_755709.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: ccr:CC0289 phosphate regulon sensor histidine kinase PhoR YP_755710.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A0599 phosphate ABC transporter, permease protein PstC YP_755711.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dps:DP1882 probable phosphate ABC transporter, permease protein (PstA) YP_755712.1 KEGG: ccr:CC0292 phosphate ABC transporter, ATP-binding protein; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_755713.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: ccr:CC0293 phosphate transport regulon regulator PhoU YP_755714.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ccr:CC0294 phosphate regulon response regulator PhoB YP_755716.1 PFAM: GcrA cell cycle regulator; KEGG: ccr:CC2245 hypothetical protein YP_755717.1 PFAM: ABC-2 type transporter; KEGG: ccr:CC2244 ABC-2 type transporter YP_755718.1 TIGRFAM: acetylornithine and succinylornithine aminotransferases; PFAM: aminotransferase class-III; KEGG: atc:AGR_C_752 acetylornithine aminotransferase YP_755719.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_755720.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_3752 diguanylate cyclase (GGDEF domain) YP_755721.1 PFAM: cation transporter; KEGG: sil:SPO1353 trk system potassium uptake protein TrkH YP_755722.1 protein associated with Co2+ and Mg2+ efflux YP_755723.1 Catalyzes the deamination of dCTP to form dUTP YP_755724.1 PFAM: peptidase S15; peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: ccr:CC1048 prolyl oligopeptidase family protein YP_755725.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: ccr:CC1048 prolyl oligopeptidase family protein YP_755726.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: ccr:CC1048 prolyl oligopeptidase family protein YP_755727.1 PFAM: glycosyl transferase, family 2; KEGG: ccr:CC1189 hypothetical protein YP_755728.1 PFAM: Phosphoglycerate mutase; KEGG: ccr:CC0526 hypothetical protein YP_755729.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pfl:PFL_5939 probable antioxidant protein PA3450 YP_755732.1 PFAM: helix-turn-helix domain protein; KEGG: ccr:CC2232 transcriptional regulator, Cro/CI family YP_755735.1 PFAM: ABC-2 type transporter; KEGG: tbd:Tbd_1082 ABC-2 type transport system permease protein YP_755736.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb0182 ABC-type multidrug transport system YP_755737.1 PFAM: secretion protein HlyD family protein; KEGG: mlo:mlr4594 hypothetical protein YP_755738.1 PFAM: regulatory protein, TetR; KEGG: dar:Daro_3923 regulatory protein, TetR YP_755739.1 KEGG: syn:sll0354 hypothetical protein YP_755740.1 class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine YP_755741.1 KEGG: sde:Sde_3818 hypothetical protein YP_755743.1 PFAM: helix-turn-helix domain protein; KEGG: sdn:Sden_1425 transciptional regulator YP_755744.1 KEGG: ccr:CC0224 hypothetical protein YP_755745.1 PFAM: cytochrome P450; KEGG: ret:RHE_CH00051 probable cytochrome p450 protein YP_755746.1 KEGG: dge:Dgeo_0875 hypothetical protein YP_755747.1 KEGG: rpc:RPC_0757 putative phage repressor YP_755748.1 PFAM: protein of unknown function DUF952; KEGG: bmb:BruAb1_0338 hypothetical protein YP_755749.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_755750.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: rsp:RSP_2204 multidrug efflux pump, MATE family YP_755752.1 KEGG: bba:Bd0906 hypothetical protein YP_755754.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: ccr:CC3646 hypothetical protein YP_755755.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: ccr:CC3645 hypothetical protein YP_755756.1 PFAM: response regulator receiver; KEGG: bja:blr5517 two-component response regulator YP_755757.1 KEGG: bja:bll1143 hypothetical protein YP_755758.1 PFAM: MscS Mechanosensitive ion channel; KEGG: sil:SPO3496 mechanosensitive ion channel family protein YP_755759.1 KEGG: ccr:CC3609 hypothetical protein YP_755761.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; KEGG: ret:RHE_CH00549 ATP-dependent RNA/DNA helicase protein YP_755762.1 PFAM: metallophosphoesterase; KEGG: nwi:Nwi_0186 metallophosphoesterase YP_755763.1 KEGG: sil:SPO3210 hypothetical protein YP_755764.1 KEGG: ret:RHE_CH00553 hypothetical protein YP_755765.1 PFAM: protein of unknown function DUF81; KEGG: jan:Jann_0843 protein of unknown function DUF81 YP_755766.1 PFAM: Peptidoglycan-binding domain 1 protein; Sel1 domain protein repeat-containing protein; KEGG: ret:RHE_CH00555 putative hemagglutinin protein YP_755768.1 PFAM: regulatory protein, MerR; KEGG: ccr:CC0081 transcriptional regulator, putative YP_755769.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: ccr:CC0080 acyl-CoA dehydrogenase family protein YP_755770.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mlo:mlr5626 acyl-CoA dehydrogenase YP_755771.1 PFAM: Negative transcriptional regulator; KEGG: bbr:BB0424 putative regulatory protein YP_755772.1 PFAM: protein of unknown function DUF559; KEGG: cte:CT1729 DNA methylase, putative YP_755773.1 KEGG: ccr:CC0077 fatty oxidation complex, beta subunit, putative; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase YP_755774.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: ccr:CC0076 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase YP_755775.1 PFAM: glycosyl transferase, family 2; KEGG: mlo:mll5318 similar to glycosyl transferase YP_755776.1 KEGG: sma:SAV950 dTDP-4-keto-6-deoxy-L-hexose2,3-dehydratase YP_755778.1 KEGG: eli:ELI_11930 glutathione S-transferase YP_755779.1 PFAM: Ankyrin; KEGG: mca:MCA2199 ankyrin repeat domain protein YP_755780.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: xcv:XCV3828 transcriptional regulator, LysR family YP_755782.1 KEGG: ade:Adeh_0425 zinc finger/thioredoxin putative YP_755783.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: ccr:CC3223 phosphomethylpyrimidine kinase YP_755784.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: atc:AGR_C_3767 hypothetical protein YP_755785.1 PFAM: aminotransferase, class V; KEGG: rru:Rru_A3040 aminotransferase, class V YP_755786.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate YP_755787.1 KEGG: ccr:CC3104 hypothetical protein YP_755788.1 KEGG: eli:ELI_06995 hypothetical protein YP_755789.1 PFAM: adenylosuccinate synthetase; KEGG: rsp:RSP_0366 adenylosuccinate synthetase YP_755790.1 KEGG: aae:aq_097 putative protein YP_755791.1 PFAM: acyltransferase 3; KEGG: reu:Reut_A0736 acyltransferase 3 YP_755793.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: ade:Adeh_2672 transcriptional regulator, AraC family YP_755794.1 PFAM: beta-lactamase; KEGG: ccr:CC1502 hypothetical protein YP_755795.1 KEGG: eli:ELI_09805 hypothetical protein YP_755797.1 KEGG: mlo:mll3428 hypothetical protein YP_755798.1 KEGG: sdn:Sden_2177 hypothetical protein YP_755800.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_755801.1 KEGG: psb:Psyr_2837 hypothetical protein YP_755802.1 KEGG: rme:Rmet_6084 hypothetical protein YP_755803.1 TIGRFAM: Twin-arginine translocation pathway signal YP_755805.1 PFAM: helix-turn-helix domain protein; KEGG: cvi:CV0910 hypothetical protein YP_755806.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: rsp:RSP_2104 hypothetical protein YP_755810.1 KEGG: nar:Saro_1733 protein of unknown function DUF481 YP_755811.1 KEGG: ccr:CC2026 hypothetical protein YP_755812.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sde:Sde_0095 sigma-24 (FecI-like) YP_755815.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters YP_755816.1 PFAM: YhhN family protein; KEGG: bte:BTH_II1470 hypothetical protein YP_755817.1 PFAM: putative esterase; KEGG: plu:plu4257 enterochelin esterase and related enzymes YP_755818.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: jan:Jann_1061 peptidase S1 and S6, chymotrypsin/Hap YP_755820.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: hch:HCH_05812 predicted epimerase PhzC/PhzF-like protein YP_755821.1 KEGG: eli:ELI_10370 putative protein disulfide isomerase YP_755822.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ccr:CC3420 ABC transporter, HlyB/MsbA family YP_755823.1 KEGG: ccr:CC0356 hypothetical protein YP_755824.1 KEGG: csa:Csal_1882 ferric uptake regulator, FUR family YP_755825.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ccr:CC0214 TonB-dependent receptor YP_755826.1 PFAM: OmpW family protein; KEGG: bur:Bcep18194_A5052 OmpW family protein YP_755827.1 PFAM: SapC family protein; KEGG: ccr:CC0215 SapC-related protein YP_755828.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: ccr:CC0217 ThiO:disulfide interchange protein, putative YP_755830.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_755831.1 KEGG: lma:LmjF14.1120 kinesin K39, putative YP_755832.1 PFAM: glycoside hydrolase, family 3 domain protein; KEGG: dde:Dde_2559 beta-N-acetylhexosaminidase YP_755833.1 PFAM: peptidase S15; peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: pha:PSHAa1953 peptidase YP_755834.1 PFAM: beta-lactamase; KEGG: aba:Acid345_0999 beta-lactamase YP_755835.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_755836.1 PFAM: chaperonin Cpn10; KEGG: eli:ELI_14405 10 kDa chaperonin, GroES YP_755837.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: ccr:CC0201 OmpA family protein YP_755838.1 PFAM: EAL domain protein; KEGG: ccr:CC0710 hypothetical protein YP_755839.1 TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bja:blr7478 hypothetical protein YP_755840.1 KEGG: mag:amb3502 chemotaxis protein YP_755841.1 PFAM: response regulator receiver; KEGG: bja:bll7479 two-component response regulator YP_755842.1 PFAM: MaoC domain protein dehydratase; KEGG: ccr:CC3498 MaoC family protein YP_755843.1 KEGG: rru:Rru_A2965 riboflavin kinase / FAD synthetase; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase YP_755844.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family; some organisms carry two different copies of this enzyme YP_755845.1 TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8, signal peptidase II; KEGG: ccr:CC0700 lipoprotein signal peptidase YP_755846.1 KEGG: ccr:CC0699 hypothetical protein YP_755847.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_755848.1 TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: ccr:CC0227 hypothetical protein YP_755849.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sil:SPO2984 RNA pseudouridylate synthase family protein YP_755850.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: ccr:CC0231 cytidine and deoxycytidylate deaminase family protein YP_755851.1 KEGG: sde:Sde_1022 RNA methyltransferase TrmH, group 3 YP_755853.1 KEGG: ccr:CC0691 hypothetical protein YP_755854.1 PFAM: protein of unknown function DUF81; KEGG: csa:Csal_0833 protein of unknown function DUF81 YP_755856.1 PFAM: aminoglycoside phosphotransferase; KEGG: ccr:CC0299 hypothetical protein YP_755857.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: ccr:CC0300 Xaa-Pro dipeptidase, putative YP_755858.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_755859.1 KEGG: rpc:RPC_4621 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; nucleic acid binding, OB-fold, tRNA/helicase-type YP_755860.1 KEGG: bmb:BruAb2_0213 hypothetical protein YP_755861.1 PFAM: peptidase M23B; KEGG: noc:Noc_2436 peptidase M23B YP_755862.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: ccr:CC2250 lipid A biosynthesis lauroyl acyltransferase YP_755863.1 KEGG: ccr:CC0301 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase YP_755864.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: nwi:Nwi_2556 three-deoxy-D-manno-octulosonic-acid transferase YP_755865.1 PFAM: protein of unknown function DUF374; KEGG: mag:amb4091 hypothetical protein YP_755866.1 KEGG: ccr:CC0306 hypothetical protein YP_755867.1 KEGG: mag:amb1110 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein YP_755868.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb4090 ABC-type multidrug transport system, ATPase and permease components YP_755869.1 KEGG: nha:Nham_3180 hypothetical protein YP_755870.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: ccr:CC0309 PmbA protein YP_755871.1 PFAM: membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG); KEGG: ilo:IL1844 glutathione S-transferase related protein, MAPEG superfamily YP_755872.1 PFAM: DSBA oxidoreductase; KEGG: mlo:mlr0515 similar to FrnE protein YP_755874.1 PFAM: protein of unknown function DUF1232; KEGG: cps:CPS_4815 hypothetical protein YP_755875.1 PFAM: aminotransferase, class I and II; KEGG: bja:blr4361 aminotransferase class I YP_755876.1 PFAM: protein of unknown function DUF1123; KEGG: eli:ELI_04705 hypothetical protein YP_755877.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_755878.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: ccr:CC0875 hemK family protein YP_755879.1 KEGG: bmb:BruAb1_1844 hypothetical protein YP_755880.1 PFAM: MOSC domain containing protein; KEGG: rpd:RPD_4096 hypothetical protein YP_755881.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: ccr:CC0878 ATP-dependent Clp protease, ATP-binding subunit ClpB YP_755883.1 PFAM: Bile acid:sodium symporter; KEGG: ilo:IL2125 arsenite efflux pump ACR3 YP_755884.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: mca:MCA1387 arsenate reductase, putative YP_755885.1 KEGG: sme:SMc02980 hypothetical protein YP_755886.1 KEGG: eli:ELI_06995 hypothetical protein YP_755887.1 PFAM: peptidase M23B; KEGG: rru:Rru_A0770 peptidase M23B YP_755888.1 KEGG: ccr:CC3470 hypothetical protein YP_755889.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: rpa:RPA1676 multidomain chemotaxis histidine kinase CheA3 (Hpt, CheA, CheW, & Resp. Reg. Rec. domains) YP_755890.1 PFAM: CheW domain protein; KEGG: nha:Nham_3375 CheW protein YP_755891.1 PFAM: response regulator receiver; KEGG: rpd:RPD_3676 response regulator receiver YP_755892.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_755893.1 PFAM: MCP methyltransferase, CheR-type; KEGG: rpb:RPB_3855 MCP methyltransferase, CheR-type YP_755895.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: sil:SPO1395 transcriptional regulator, AraC family YP_755897.1 KEGG: pfl:PFL_3400 lipoprotein, putative YP_755899.1 KEGG: rpd:RPD_4106 dienelactone hydrolase YP_755900.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ccr:CC3035 cell cycle transcriptional regulator CtrA YP_755901.1 involved in type III protein export during flagellum assembly YP_755902.1 KEGG: rpa:RPA1634 hypothetical protein YP_755903.1 TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: neu:NE1540 TonB-dependent receptor protein YP_755904.1 KEGG: xcv:XCV0878 putative secreted protein YP_755905.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ava:Ava_2802 transcriptional regulator, LysR family YP_755906.1 KEGG: cps:CPS_1654 hypothetical protein YP_755907.1 KEGG: ppr:PBPRB1527 hypothetical protein YP_755908.1 KEGG: sde:Sde_1321 exporter of the RND superfamily YP_755910.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: mag:amb0496 ATPase involved in chromosome partitioning YP_755911.1 PFAM: GTP-binding signal recognition particle SRP54, G- domain; KEGG: rru:Rru_A0533 GTP-binding signal recognition particle SRP54, G-domain YP_755912.1 membrane protein involved in the flagellar export apparatus YP_755913.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: ccr:CC0909 transcriptional regulator FlbD YP_755914.1 One of three proteins involved in switching the direction of the flagellar rotation YP_755915.1 binds to and inhibits the function of flagella specific ATPase FliI YP_755916.1 One of three proteins involved in switching the direction of the flagellar rotation YP_755917.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_755918.1 PFAM: protein of unknown function DUF1153; KEGG: bmb:BruAb1_1580 hypothetical protein YP_755919.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: ccr:CC0902 flagellar hook protein YP_755920.1 PFAM: flagellar hook capping protein; KEGG: mag:amb0505 flagellar hook capping protein YP_755921.1 PFAM: flagellar hook-length control protein; KEGG: rpb:RPB_4117 flagellar hook-length control protein YP_755922.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: ccr:CC0899 flagellar hook-associated protein FlaN, putative YP_755923.1 KEGG: ccr:CC0898 flagellin, putative YP_755924.1 PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: sil:SPO1677 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_755925.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: ade:Adeh_4115 Sel1 family protein YP_755926.1 SMART: Sel1 domain protein repeat-containing protein YP_755927.1 PFAM: Abortive infection protein; KEGG: ccr:CC3074 hypothetical protein YP_755928.1 KEGG: bpa:BPP4361 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase YP_755929.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: sdy:SDY_P087 hypothetical protein YP_755930.1 PFAM: plasmid stabilization system; KEGG: sfl:CP0218 hypothetical protein YP_755931.1 KEGG: bja:bll0600 hypothetical protein YP_755933.1 PFAM: regulatory protein, TetR; KEGG: nfa:nfa14620 putative transcriptional regulator YP_755934.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: ccr:CC3177 transcriptional regulator, AsnC family YP_755935.1 PFAM: dehydrogenase, E1 component; KEGG: nar:Saro_1976 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) YP_755936.1 PFAM: Transketolase, central region; Transketolase domain protein; KEGG: bms:BRA0525 2-oxoisovalerate dehydrogenase, E1 component, beta subunit YP_755937.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: mlo:mll4471 dihydrolipoamide S-(2-methylpropanoyl)transferase YP_755940.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: mlo:mll4470 dihydrolipoamide dehydrogenase YP_755941.1 PFAM: thioesterase superfamily protein; KEGG: ccr:CC2506 hypothetical protein YP_755942.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: pol:Bpro_3968 malate/L-lactate dehydrogenase YP_755943.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: cps:CPS_3972 putative TonB protein YP_755944.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: bja:bll1203 probable methyl-accepting chemotaxis protein YP_755945.1 KEGG: nha:Nham_2822 hypothetical protein YP_755946.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: mag:amb4015 signal transduction histidine kinase YP_755947.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: neu:NE2388 CutA1 divalent ion tolerance protein YP_755948.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: ccr:CC3160 ExsB protein YP_755949.1 PFAM: Radical SAM domain protein; KEGG: ccr:CC3159 hypothetical protein YP_755953.1 PFAM: protein of unknown function DUF1355; KEGG: jan:Jann_0686 hypothetical protein YP_755954.1 TIGRFAM: conserved hypothetical membrane protein; KEGG: ret:RHE_CH03054 hypothetical protein YP_755955.1 KEGG: mag:amb3863 hypothetical protein YP_755956.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: jan:Jann_0683 AAA_3 ATPase YP_755957.1 PFAM: protein of unknown function DUF1285; KEGG: ccr:CC0406 hypothetical protein YP_755958.1 PFAM: NUDIX hydrolase; KEGG: ccr:CC0407 MutT/NUDIX family protein YP_755960.1 PFAM: Polynucleotide adenylyltransferase region; KEGG: mlo:mll2726 tRNA nucleotidyltransferase (CCA-adding enzyme) YP_755961.1 PFAM: peptidase S41; KEGG: ctc:CTC01801 hypothetical protein YP_755962.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: bur:Bcep18194_A5985 transcriptional regulator, AraC family YP_755963.1 PFAM: Abortive infection protein; KEGG: aba:Acid345_4420 abortive infection protein YP_755964.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: pfl:PFL_5197 transcriptional regulator, AraC family YP_755965.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_755966.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: ccr:CC0471 spoU rRNA methylase family protein YP_755967.1 KEGG: sme:SMc00187 ubiquinol-cytochrome c reductase iron-sulfur subunit; TIGRFAM: Twin-arginine translocation pathway signal; ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein YP_755968.1 PFAM: Cytochrome b/b6, N-terminal domain; Cytochrome b/b6, C-terminal domain; KEGG: ccr:CC0473 ubiquinol-cytochrome c reductase cytochrome b subunit YP_755969.1 PFAM: cytochrome c1; KEGG: ccr:CC0474 ubiquinol-cytochrome c reductase cytochrome c1 subunit YP_755970.1 KEGG: gox:GOX1897 5'-methylthioadenosine phosphorylase; TIGRFAM: methylthioadenosine phosphorylase; PFAM: purine phosphorylase, family 2 YP_755972.1 KEGG: sil:SPO3347 hypothetical protein YP_755973.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: hch:HCH_06697 glutathione S-transferase YP_755974.1 KEGG: nwi:Nwi_2613 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_755975.1 KEGG: aba:Acid345_1150 hypothetical protein YP_755976.1 PFAM: peptidase S10, serine carboxypeptidase; KEGG: pcu:pc0501 hypothetical protein YP_755977.1 KEGG: pub:SAR11_1167 hypothetical protein YP_755978.1 PFAM: protein of unknown function DUF519; KEGG: mlo:mlr7888 hypothetical protein YP_755979.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll4523 ATP-binding component of ABC transporter YP_755980.1 PFAM: ABC-2 type transporter; KEGG: rpd:RPD_3371 ABC-2 YP_755981.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: sme:SMc04271 hypothetical protein YP_755982.1 KEGG: pae:PA2927 hypothetical protein YP_755983.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpa:RPA3441 enoyl-CoA hydratase/isomerase family protein YP_755984.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH02305 probable drug resistance transporter protein, Bcr/CflA family YP_755985.1 KEGG: sme:SMc02351 hypothetical protein YP_755986.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_755987.1 PFAM: peptidyl-tRNA hydrolase; KEGG: ccr:CC0484 peptidyl-tRNA hydrolase YP_755988.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_755990.1 KEGG: ccr:CC0487 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_755991.1 PFAM: protein of unknown function DUF185; KEGG: sil:SPO0907 hypothetical protein YP_755992.1 PFAM: prolipoprotein diacylglyceryl transferase; KEGG: ccr:CC0492 prolipoprotein diacylglyceryl transferase YP_755993.1 PFAM: protein of unknown function DUF526; KEGG: sil:SPO0909 hypothetical protein YP_755994.1 KEGG: ccr:CC0493 hypothetical protein YP_755995.1 KEGG: nwi:Nwi_2514 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein YP_755996.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: ccr:CC2932 sensor histidine kinase YP_755997.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rru:Rru_A2225 two component transcriptional regulator, winged helix family YP_755999.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: gme:Gmet_1952 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_756000.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: bpe:BP3483 haloacid dehalogenase-like hydrolase YP_756003.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_756004.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_4087 short-chain dehydrogenase/reductase SDR YP_756005.1 KEGG: bxe:Bxe_A0205 dihydroneopterin aldolase YP_756006.1 PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: nph:NP3452A hypothetical protein YP_756007.1 KEGG: mag:amb4316 hypothetical protein YP_756008.1 PFAM: beta-lactamase; KEGG: gvi:glr3508 hypothetical protein YP_756009.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: sil:SPO3639 K+-dependent Na+/Ca+ exchanger related-protein YP_756010.1 PFAM: NUDIX hydrolase; KEGG: ccr:CC0418 MutT/NUDIX family protein YP_756011.1 KEGG: mag:amb1264 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_756012.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_3780 multi-sensor signal transduction histidine kinase YP_756013.1 PFAM: response regulator receiver; KEGG: syf:Synpcc7942_1356 response regulator receiver domain protein (CheY-like) YP_756016.1 KEGG: cte:CT1208 enterochelin esterase and related enzymes YP_756017.1 PFAM: phosphoribosyltransferase; KEGG: sdn:Sden_0725 hypoxanthine-guanine phosphoribosyltransferase YP_756020.1 KEGG: ccr:CC2915 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_756021.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: ccr:CC2913 L-aspartate oxidase YP_756022.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_756024.1 PFAM: pseudouridine synthase; KEGG: jan:Jann_4024 pseudouridine synthase YP_756025.1 KEGG: sdn:Sden_3149 RebB protein YP_756026.1 KEGG: ccr:CC1450 hypothetical protein YP_756027.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: ccr:CC1451 hypothetical protein YP_756028.1 KEGG: ccr:CC1453 hypothetical protein YP_756029.1 KEGG: sru:SRU_0100 hypothetical protein YP_756030.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_756031.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: nha:Nham_0084 ammonium transporter YP_756032.1 PFAM: beta-lactamase; KEGG: bha:BH0715 hypothetical protein YP_756033.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_756034.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: jan:Jann_0044 alcohol dehydrogenase GroES-like YP_756037.1 KEGG: sme:SMa0545 hypothetical protein YP_756038.1 PFAM: putative esterase; KEGG: gvi:glr4426 S-formylglutathione hydrolase YP_756041.1 KEGG: jan:Jann_0495 DNA-3-methyladenine glycosylase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase YP_756042.1 KEGG: rru:Rru_A1712 chemotaxis sensory transducer; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_756043.1 PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: ret:RHE_CH01404 putative aminomethyltransferase protein (glycine cleavage) YP_756044.1 PFAM: glycosyl transferase, family 9; KEGG: rru:Rru_A2230 glycosyl transferase, family 9 YP_756045.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides YP_756046.1 KEGG: mag:amb4481 hypothetical protein YP_756047.1 KEGG: bba:Bd0965 hypothetical protein YP_756048.1 PFAM: protein of unknown function DUF214; KEGG: sde:Sde_1759 hypothetical protein YP_756049.1 PFAM: protein of unknown function DUF214; KEGG: sde:Sde_1758 putative ABC transport system permease protein YP_756050.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sde:Sde_1757 ABC transporter ATP-binding protein YP_756051.1 PFAM: secretion protein HlyD family protein; KEGG: sde:Sde_1756 acriflavin resistance protein YP_756052.1 PFAM: helix-turn-helix domain protein; KEGG: bth:BT1984 transcriptional regulator YP_756054.1 TIGRFAM: conserved hypothetical protein; KEGG: rpa:RPA1072 hypothetical protein YP_756055.1 PFAM: NUDIX hydrolase; KEGG: ccr:CC3382 MutT/nudix family protein YP_756056.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_3147 glyoxalase family protein YP_756057.1 TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ccr:CC3384 D-beta-hydroxybutyrate dehydrogenase YP_756058.1 PFAM: Excinuclease ABC, C subunit domain protein; KEGG: ccr:CC3518 hypothetical protein YP_756059.1 PFAM: protein of unknown function DUF328; KEGG: ccr:CC3385 hypothetical protein YP_756060.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rpb:RPB_0459 endonuclease/exonuclease/phosphatase family YP_756061.1 PFAM: FAD linked oxidase domain protein; KEGG: ccr:CC3389 oxidoreductase, FAD-binding YP_756062.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC, N-terminal domain; KEGG: rpa:RPA1077 SUA5/YciO/YrdC/YwlC protein family:SUA5 domain YP_756063.1 PFAM: YceI family protein; KEGG: rpc:RPC_2321 YceI YP_756064.1 PFAM: cytochrome B561; KEGG: rpc:RPC_2322 cytochrome b561 YP_756065.1 PFAM: YceI family protein; KEGG: ccr:CC2609 hypothetical protein YP_756066.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: ccr:CC3393 acyl-CoA dehydrogenase family protein YP_756067.1 KEGG: ccr:CC0412 hypothetical protein YP_756068.1 PFAM: protein of unknown function DUF74; KEGG: afu:AF0869 hypothetical protein YP_756069.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: rpa:RPA0824 signal peptidase I YP_756070.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: nha:Nham_0252 peptidase S26A, signal peptidase I YP_756071.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ccr:CC0400 short chain dehydrogenase YP_756072.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: sde:Sde_3153 AraC-type DNA-binding domain-containing proteins-like YP_756073.1 KEGG: sdn:Sden_0841 hypothetical protein YP_756074.1 SMART: nuclear protein SET; KEGG: mlo:mll7640 hypothetical protein YP_756075.1 PFAM: histone deacetylase superfamily; KEGG: mca:MCA2486 histone deacetylase/AcuC/AphA family protein YP_756076.1 PFAM: Phosphoglycerate mutase; KEGG: ccr:CC2071 hypothetical protein YP_756077.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: ccr:CC2070 exodeoxyribonuclease small subunit YP_756078.1 TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein; KEGG: jan:Jann_3327 secretion chaperone CsaA YP_756079.1 PFAM: Polyprenyl synthetase; KEGG: ccr:CC2069 geranyltranstransferase YP_756080.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_756081.1 PFAM: UspA domain protein; KEGG: csa:Csal_2763 UspA YP_756082.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: rsp:RSP_4197 antisigma-factor antagonist, STAS YP_756083.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: ccr:CC1324 hemolysin A YP_756084.1 KEGG: pae:PA5182 hypothetical protein YP_756085.1 KEGG: rba:RB9513 probable mu-protocadherin-putative cell-suface protein YP_756086.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_756088.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate YP_756089.1 KEGG: eba:ebA2569 hypothetical protein YP_756090.1 PFAM: beta-lactamase domain protein; KEGG: ccr:CC0923 metallo-beta-lactamase family protein YP_756092.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A0591 binding-protein-dependent transport systems inner membrane component YP_756093.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_00701 ABC-type dipeptide/oligopeptide/nickel transport system, permease components YP_756094.1 KEGG: syd:Syncc9605_2009 dihydrolipoamide acetyltransferase YP_756095.1 KEGG: ccr:CC2822 hypothetical protein YP_756096.1 PFAM: extracellular solute-binding protein, family 5; KEGG: hch:HCH_00703 ABC-type oligopeptide transport system, periplasmic component YP_756097.1 KEGG: cps:CPS_4814 hypothetical protein YP_756098.1 TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: ccr:CC0927 signal peptide peptidase SppA YP_756099.1 KEGG: vpa:VP0167 hypothetical protein YP_756100.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: noc:Noc_0607 MotA/TolQ/ExbB proton channel YP_756101.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pha:PSHAb0522 putative TonB system-dependent transport protein YP_756102.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ilo:IL1856 biopolymer transport protein YP_756103.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sde:Sde_0355 branched-chain amino acid aminotransferase I YP_756104.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: ppr:PBPRB0698 hypothetical tonB2 protein YP_756105.1 SMART: Tetratricopeptide domain protein; KEGG: noc:Noc_0611 TPR repeat protein YP_756106.1 KEGG: noc:Noc_0611 TPR repeat protein YP_756107.1 TIGRFAM: TonB family protein; KEGG: ilo:IL1855 TonB-like periplasmic protein YP_756108.1 PFAM: Excinuclease ABC, C subunit domain protein; KEGG: rpc:RPC_3180 excinuclease ABC, C subunit-like YP_756109.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: bja:blr0376 protease II YP_756110.1 KEGG: syd:Syncc9605_0016 methionine sulfoxide reductase B; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B YP_756111.1 PFAM: major facilitator superfamily MFS_1; KEGG: psb:Psyr_1923 hypothetical protein YP_756113.1 KEGG: ccr:CC0948 hypothetical protein YP_756114.1 PFAM: Excinuclease ABC, C subunit domain protein; KEGG: ftl:FTL_0527 endonuclease YP_756115.1 PFAM: cation antiporter; KEGG: rru:Rru_A1641 cation antiporter YP_756116.1 PFAM: multiple resistance and pH regulation protein F; KEGG: rru:Rru_A1640 multiple resistance and pH regulation protein F YP_756117.1 TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: rba:RB1436 Na+/H+ antiporter YP_756118.1 KEGG: rru:Rru_A1638 putative multicomponent Na+-H+ antiporter subunit A YP_756119.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_756120.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: rba:RB1432 conserved hypothetical protein-putative multisubunit Na+/H+ antiporter YP_756121.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone YP_756122.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rru:Rru_A1634 NADH dehydrogenase (quinone) YP_756124.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport YP_756125.1 PFAM: Chromosomal replication initiator, DnaA C-terminal domain; KEGG: ccr:CC1058 hypothetical protein YP_756126.1 KEGG: nwi:Nwi_2226 ATPase involved in DNA replication initiation YP_756127.1 PFAM: Fe-S metabolism associated SufE; KEGG: atc:AGR_C_1673 hypothetical 15.6 kDa protein in MucR 3'region (orf5) YP_756129.1 KEGG: ccr:CC0486 hypothetical protein YP_756130.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: ccr:CC1063 sensor histidine kinase DivJ YP_756131.1 PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; KEGG: ret:RHE_CH02179 ATP-dependent RNA helicase protein YP_756132.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_3898 multi-sensor signal transduction histidine kinase YP_756133.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cps:CPS_3952 sensor histidine kinase YP_756134.1 PFAM: response regulator receiver; KEGG: sdn:Sden_3604 response regulator receiver YP_756135.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sil:SPO2446 ABC transporter, ATP-binding protein YP_756136.1 KEGG: ccr:CC1064 hypothetical protein YP_756138.1 PFAM: protein of unknown function DUF1491; KEGG: ccr:CC1065 hypothetical protein YP_756139.1 KEGG: ccr:CC1066 hypothetical protein YP_756140.1 TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: ccr:CC1070 peptide chain release factor RF-3 YP_756141.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pub:SAR11_0308 mechanosensitive ion channel YP_756143.1 KEGG: ccr:CC2637 hypothetical protein YP_756145.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: bxe:Bxe_B0954 putative diguanylate cyclase/phosphodiesterase(GGDEF & EAL domains) YP_756146.1 PFAM: Ion transport protein; KEGG: sil:SPO0030 voltage-gated sodium channel YP_756147.1 KEGG: ccr:CC3277 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase YP_756148.1 PFAM: protein of unknown function UPF0153; KEGG: nwi:Nwi_1151 hypothetical protein YP_756149.1 PFAM: protein of unknown function DUF264; KEGG: bme:BMEI1350 phage DNA packaging protein YP_756150.1 TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; KEGG: ccr:CC2788 genetic exchange protein, putative YP_756151.1 KEGG: ccr:CC2787 hypothetical protein YP_756152.1 TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35, phage prohead HK97; KEGG: jan:Jann_1634 peptidase U35, phage prohead HK97 YP_756153.1 TIGRFAM: phage major capsid protein, HK97 family; PFAM: phage major capsid protein, HK97; KEGG: rpa:RPA1888 putative major capsid protein, R. capsulatus GTA orfg5 homologue YP_756155.1 KEGG: rpb:RPB_3468 phage conserved hypothetical protein, phiE125 gp8 YP_756156.1 KEGG: rpa:RPA1898 homologue of rhodobacter capsulatus gene transfer agent (GTA) orfg8 YP_756157.1 TIGRFAM: phage major tail protein, TP901-1 family; KEGG: ccr:CC2781 hypothetical protein YP_756158.1 KEGG: rpb:RPB_3464 gene transfer agent (GTA) orfg10 YP_756160.1 KEGG: ccr:CC2779 hypothetical protein YP_756161.1 TIGRFAM: conserved hypothetical protein; KEGG: rsp:RSP_2476 hypothetical protein YP_756162.1 KEGG: rpa:RPA1905 homologue of rhodobacter capsulatus gene transfer agent (GTA) orfg13 YP_756163.1 TIGRFAM: putative phage cell wall peptidase, NlpC/P60 family; PFAM: NLP/P60 protein; KEGG: ccr:CC2775 hypothetical protein YP_756164.1 KEGG: rpd:RPD_1993 gene transfer agent (GTA) orfg15 YP_756165.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: mag:amb0888 DnaJ-class molecular chaperone YP_756166.1 PFAM: Propeptide, PepSY amd peptidase M4; KEGG: ccr:CC2767 hypothetical protein YP_756167.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mlo:mlr7684 two-component system, regulatory protein YP_756168.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: ccr:CC2765 sensor histidine kinase YP_756169.1 KEGG: nha:Nham_1436 hypothetical protein YP_756170.1 PFAM: protein of unknown function DUF938; KEGG: bur:Bcep18194_B2182 protein of unknown function DUF938 YP_756171.1 PFAM: CcmE/CycJ protein; KEGG: bbr:BB2807 cytochrome C-type biogenesis protein YP_756172.1 PFAM: OsmC family protein; KEGG: rpa:RPA1730 possible hydrolase YP_756173.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: bja:blr2591 serine protease DO-like protease YP_756174.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpc:RPC_1842 two component transcriptional regulator, winged helix family YP_756175.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: ccr:CC2755 sensor histidine kinase YP_756176.1 PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: ccr:CC2753 glutamate-ammonia-ligase adenylyltransferase, putative YP_756177.1 KEGG: eli:ELI_11915 hypothetical protein YP_756178.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: ccr:CC2751 RNA polymerase sigma-70 factor, ECF subfamily YP_756179.1 KEGG: bxe:Bxe_B1628 hypothetical protein YP_756180.1 KEGG: bur:Bcep18194_B1381 integral membrane protein YP_756181.1 KEGG: ccr:CC2482 non-motile and phage-resistance protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_756182.1 PFAM: response regulator receiver; KEGG: rpd:RPD_3241 response regulator receiver YP_756183.1 PFAM: EAL domain protein; KEGG: mag:amb0770 EAL domain YP_756184.1 KEGG: ccr:CC2480 hypothetical protein YP_756185.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: ccr:CC1306 TIM-barrel protein, yjbN family YP_756186.1 PFAM: protein of unknown function DUF81; KEGG: rsp:RSP_1927 hypothetical protein YP_756187.1 TIGRFAM: conserved hypothetical protein; KEGG: rbe:RBE_1317 putative aspartyl protease YP_756188.1 PFAM: protein of unknown function DUF1289; KEGG: ccr:CC1308 hypothetical protein YP_756189.1 PFAM: nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: pca:Pcar_0272 putative H+/nucleoside symporter YP_756190.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: sde:Sde_3507 acetyltransferase (isoleucine patch superfamily)-like YP_756191.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: sme:SMc01805 hypothetical protein YP_756192.1 KEGG: rpb:RPB_2383 hypothetical protein YP_756193.1 KEGG: uracil-DNA glycosylase YP_756194.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: ccr:CC2082 leucine dehydrogenase YP_756195.1 PFAM: MscS Mechanosensitive ion channel; KEGG: sha:SH2633 hypothetical protein YP_756196.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sil:SPO2689 iron ABC transporter, ATP-binding protein, putative YP_756197.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dar:Daro_1198 binding-protein-dependent transport systems inner membrane component YP_756198.1 PFAM: extracellular solute-binding protein, family 1; KEGG: csa:Csal_0549 extracellular solute-binding protein, family 1 YP_756200.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ccr:CC2305 phosphoglycolate phosphatase YP_756201.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: ccr:CC2304 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase YP_756202.1 PFAM: aldehyde dehydrogenase; KEGG: rpa:RPA2324 succinate-semialdehyde dehydrogenase YP_756203.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_756204.1 TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ccr:CC2302 glutathione reductase YP_756205.1 KEGG: pae:PA2843 phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase, class II YP_756206.1 PFAM: histone family protein DNA-binding protein; KEGG: dar:Daro_1715 histone-like bacterial DNA-binding protein YP_756207.1 PFAM: response regulator receiver; KEGG: son:SO0859 sensory box histidine kinase/response regulator YP_756208.1 PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pha:PSHAb0289 putative two-component hybrid sensor and regulator YP_756210.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ccr:CC2016 alcohol dehydrogenase, zinc-containing YP_756212.1 PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: ccr:CC2015 oxidoreductase, Gfo/Idh/MocA family YP_756213.1 KEGG: mag:amb1233 glutamine-dependent NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthase YP_756217.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: mag:amb1235 glutamyl-tRNA synthetase YP_756218.1 PFAM: alpha/beta hydrolase fold; KEGG: ccr:CC2230 hydrolase, alpha/beta hydrolase fold family YP_756219.1 KEGG: pfl:PFL_4030 hypothetical protein YP_756220.1 PFAM: helix-turn-helix domain protein; KEGG: nar:Saro_0207 transcriptional regulator, XRE family YP_756221.1 PFAM: conserved hypothetical protein 730; KEGG: sil:SPO2337 decarboxylase family protein YP_756222.1 PFAM: Peptidoglycan-binding LysM; KEGG: rru:Rru_A3586 peptidoglycan-binding LysM YP_756225.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ccr:CC1314 ABC transporter, HlyB/MsbA family YP_756228.1 PFAM: Prephenate dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: sil:SPO1379 prephenate dehydrogenase, putative YP_756229.1 KEGG: eli:ELI_09690 hypothetical protein YP_756230.1 KEGG: jan:Jann_1844 hypothetical protein YP_756231.1 PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: atc:AGR_L_236 hypothetical protein slr1343 YP_756232.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: atc:AGR_L_91 hypothetical protein YP_756233.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rsp:RSP_0252 protein-L-isoaspartate carboxylmethyltransferase YP_756234.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: ccr:CC1318 outer membrane protein TolC, putative YP_756235.1 KEGG: ccr:CC1319 hypothetical protein YP_756236.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function YP_756237.1 KEGG: ret:RHE_CH02323 recombinase A protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase YP_756239.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_756240.1 KEGG: nar:Saro_1826 hypothetical protein YP_756242.1 Converts isocitrate to alpha ketoglutarate YP_756243.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: ccr:CC2520 spoU rRNA methylase family protein YP_756244.1 PFAM: beta-lactamase; KEGG: tcx:Tcr_1072 beta-lactamase YP_756247.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_756249.1 PFAM: glycoside hydrolase 15-related; KEGG: reu:Reut_A0415 glycoside hydrolase 15-related YP_756250.1 KEGG: pol:Bpro_3915 HAD-superfamily hydrolase subfamily IIB; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase YP_756251.1 PFAM: glycosyl transferase, family 20; KEGG: bur:Bcep18194_B1522 alpha,alpha-trehalose-phosphate synthase (UDP-forming) YP_756252.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: atc:AGR_C_3401 conserved hypothetical protein NMB0773 YP_756253.1 PFAM: aldo/keto reductase; KEGG: xoo:XOO2432 putative oxidoreductase YP_756254.1 PFAM: BolA family protein; KEGG: mag:amb2116 stress-induced morphogen YP_756255.1 KEGG: sil:SPO0954 hypothetical protein YP_756256.1 PFAM: peptidase M20; peptidase M28; KEGG: ccr:CC2502 peptidase M20/M25/M40 family protein YP_756257.1 KEGG: sdn:Sden_2935 isoprenylcysteine carboxyl methyltransferase YP_756258.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_756260.1 PFAM: protein of unknown function UPF0150; KEGG: rpc:RPC_3983 protein of unknown function UPF0150 YP_756261.1 TIGRFAM: phosphoribosylformylglycinamidine synthase I; PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: nar:Saro_1032 phosphoribosylformylglycinamidine synthase I YP_756262.1 TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; KEGG: rsp:RSP_2127 component of phosphoribosylformylglycinamidine (FGAM) synthetase YP_756263.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_756264.1 PFAM: protein of unknown function DUF1476; KEGG: mlo:mlr0071 hypothetical protein YP_756266.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: ava:Ava_1936 pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_756267.1 TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: rsp:RSP_2221 adenylosuccinate lyase YP_756268.1 PFAM: protein of unknown function DUF559; KEGG: mca:MCA0550 DNA methyltransferase YP_756270.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_756271.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: mtc:MT0578 hypothetical protein YP_756272.1 KEGG: pfl:PFL_3338 hypothetical protein YP_756273.1 KEGG: jan:Jann_2762 glyoxalase/bleomycin resistance protein/dioxygenase YP_756274.1 PFAM: DNA repair protein RadC; KEGG: atc:AGR_C_2959 DNA repair protein RadC homolog YP_756275.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: rpa:RPA0387 putative methionine aminopeptidase YP_756276.1 PFAM: peptidase M28; KEGG: ilo:IL1029 probable aminopeptidase YP_756277.1 PFAM: thioesterase superfamily protein; KEGG: pae:PA3130 hypothetical protein YP_756278.1 PFAM: sugar fermentation stimulation protein; KEGG: mag:amb1604 DNA-binding protein YP_756279.1 PFAM: molybdopterin binding domain; KEGG: ccr:CC2674 hypothetical protein YP_756280.1 PFAM: von Willebrand factor, type A; KEGG: sde:Sde_0824 arginine biosynthesis protein ArgJ YP_756281.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_4276 TonB-dependent receptor YP_756282.1 PFAM: sulfotransferase; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: nar:Saro_0601 sulfotransferase YP_756283.1 KEGG: eli:ELI_04625 hypothetical protein YP_756284.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: noc:Noc_0541 TonB-dependent receptor YP_756286.1 SMART: HhH-GPD family protein; KEGG: vvy:VV2881 putative DNA glycosylase YP_756287.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: ccr:CC2372 hypothetical protein YP_756288.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ccr:CC1643 hydrolase, haloacid dehalogenase-like family YP_756289.1 KEGG: cvi:CV2022 alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; Shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein YP_756290.1 PFAM: regulatory protein, AsnC/Lrp family; Helix-turn-helix, type 11 domain protein; KEGG: jan:Jann_0459 transcriptional regulator, AsnC family YP_756291.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis YP_756292.1 PFAM: nitroreductase; KEGG: sde:Sde_1495 conserved hypothetical protein XF2007 YP_756293.1 PFAM: regulatory protein, TetR; KEGG: aba:Acid345_4024 transcriptional regulator, TetR family YP_756294.1 KEGG: son:SO3278 hypothetical protein YP_756295.1 KEGG: ana:alr1655 hypothetical protein YP_756296.1 PFAM: acriflavin resistance protein; KEGG: ava:Ava_4735 acriflavin resistance protein YP_756297.1 PFAM: NUDIX hydrolase; KEGG: ccr:CC2652 MutT/NUDIX family protein YP_756298.1 KEGG: ccr:CC2651 serine acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine acetyltransferase domain protein YP_756299.1 KEGG: sme:SMc02112 hypothetical unknown protein YP_756300.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nha:Nham_2718 ABC transporter related YP_756301.1 PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: rpc:RPC_3244 substrate-binding region of ABC-type glycine betaine transport system YP_756303.1 PFAM: PhoH family protein; KEGG: ccr:CC2644 PhoH-related protein YP_756304.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: ccr:CC2643 bacterial transferase family protein YP_756306.1 PFAM: type IV pilus assembly PilZ; KEGG: mlo:mll0185 hypothetical protein YP_756307.1 KEGG: ccr:CC2640 hypothetical protein YP_756308.1 KEGG: ccr:CC2639 hypothetical protein YP_756309.1 KEGG: nwi:Nwi_1129 hypothetical protein YP_756310.1 SMART: regulatory protein, ArsR; KEGG: rfr:Rfer_3667 transcriptional regulator, ArsR family YP_756312.1 KEGG: bpm:BURPS1710b_2229 Hep_Hag family YP_756313.1 KEGG: ccr:CC2629 HfaB protein YP_756314.1 KEGG: ccr:CC2628 HfaA protein YP_756315.1 PFAM: Rhomboid family protein; KEGG: rpd:RPD_3272 rhomboid-like protein YP_756316.1 KEGG: bja:bll0405 hypothetical protein YP_756317.1 KEGG: mlo:mll1060 hypothetical protein YP_756318.1 PFAM: CBS domain containing protein; KEGG: mpa:MAP2219c hypothetical protein YP_756321.1 PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: mfa:Mfla_1832 NADPH-dependent FMN reductase YP_756322.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: xac:XAC1351 hypothetical protein YP_756323.1 KEGG: rme:Rmet_1753 hypothetical protein YP_756326.1 PFAM: regulatory protein, MerR; KEGG: eli:ELI_09970 heavy metal resistance transcriptional regulator HmrR, MerR family protein YP_756327.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_756328.1 TIGRFAM: homoserine kinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; KEGG: xft:PD1272 homoserine kinase YP_756329.1 PFAM: aspartate/glutamate/uridylate kinase; homoserine dehydrogenase; homoserine dehydrogenase, NAD-binding; KEGG: sma:SAV2918 putative homoserine dehydrogenase YP_756330.1 KEGG: eli:ELI_07040 hypothetical protein YP_756331.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_756332.1 KEGG: aba:Acid345_3678 hypothetical protein YP_756333.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: reu:Reut_A0326 pirin, N-terminal:pirin, C-terminal YP_756334.1 PFAM: peptidase M20; peptidase M28; KEGG: sdn:Sden_2728 peptidase M28 YP_756335.1 KEGG: rpb:RPB_4111 hypothetical protein YP_756336.1 PFAM: glycosyl transferase, family 2; chitin synthase; KEGG: aba:Acid345_0397 polysaccharide deacetylase YP_756338.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: bxe:Bxe_B0273 putative glutathione S-transferase YP_756342.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Amidase; KEGG: aba:Acid345_2854 amidase YP_756343.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: sil:SPO0563 glutathione S-transferase, putative YP_756344.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: hma:pNG7354 nitrilase YP_756345.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: ilo:IL0517 acylaminoacyl-peptidase YP_756346.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: xcb:XC_2512 TonB-dependent receptor YP_756347.1 KEGG: sil:SPO3631 OmpA domain protein YP_756348.1 KEGG: mlo:mlr3004 NADH dehydrogenase I chain E YP_756349.1 KEGG: ccr:CC1285 hypothetical protein YP_756350.1 MDM; functions in conversion of succinate to propionate YP_756351.1 PFAM: methylmalonyl-CoA mutase; KEGG: ccr:CC2373 methylmalonyl-CoA mutase, beta subunit YP_756352.1 KEGG: ccr:CC2371 hypothetical protein YP_756353.1 KEGG: proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold YP_756355.1 PFAM: hemopexin; KEGG: hch:HCH_03222 protein containing hemopexin repeats YP_756357.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_756358.1 KEGG: ccr:CC2349 hypothetical protein YP_756359.1 PFAM: Uncharacterised conserved protein UCP032146; KEGG: rpb:RPB_4349 uncharacterised conserved protein UCP032146 YP_756360.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: ccr:CC2344 phosphotyrosine protein phosphatase YP_756361.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_756362.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: rpb:RPB_4346 maf protein YP_756363.1 SMART: RNA binding S1 domain protein; KEGG: mag:amb3337 ribonuclease G and E YP_756364.1 PFAM: protein of unknown function DUF329; KEGG: ccr:CC2340 hypothetical protein YP_756366.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pae:PA0840 probable oxidoreductase YP_756367.1 PFAM: RimK domain protein ATP-grasp; KEGG: rpd:RPD_0263 hypothetical protein YP_756368.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: rpb:RPB_0564 FolC bifunctional protein YP_756369.1 KEGG: ccr:CC2569 monooxygenase, flavin-binding family YP_756370.1 PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rme:Rmet_5847 short-chain dehydrogenase/reductase SDR YP_756371.1 PFAM: alpha/beta hydrolase fold; KEGG: rme:Rmet_1011 alpha/beta hydrolase fold YP_756373.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate YP_756374.1 PFAM: regulatory protein, ArsR; Helix-turn-helix, type 11 domain protein; KEGG: sme:SMc02639 putative transcription regulator protein YP_756375.1 KEGG: bja:blr7361 hypothetical protein YP_756376.1 KEGG: cps:CPS_2167 hypothetical protein YP_756377.1 TIGRFAM: threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; amino acid-binding ACT domain protein; KEGG: bja:bll4731 probable threonine dehydratase YP_756378.1 KEGG: sme:SMc02495 putative transaldolase-like protein; TIGRFAM: putative transaldolase; PFAM: Transaldolase YP_756379.1 KEGG: eli:ELI_07325 hypothetical protein YP_756380.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase, subunit I; KEGG: ccr:CC1401 cb-type cytochrome c oxidase subunit I YP_756381.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase, mono-heme subunit/FixO; KEGG: ccr:CC1402 cb-type cytochrome c oxidase subunit II YP_756382.1 PFAM: Cbb3-type cytochrome oxidase component YP_756383.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: ccr:CC1404 cb-type cytochrome c oxidase subunit III YP_756384.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: ccr:CC1405 ferredoxin, putative YP_756385.1 PFAM: FixH family protein; KEGG: bja:blr2768 FixH protein YP_756386.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: ccr:CC1407 cation-transporting ATPase, E1-E2 family YP_756387.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: rru:Rru_A3323 cytochrome oxidase maturation protein cbb3-type YP_756388.1 KEGG: mag:amb2986 predicted integral membrane protein YP_756389.1 KEGG: psp:PSPPH_3348 hypothetical protein YP_756390.1 PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: ccr:CC3571 hypothetical protein YP_756391.1 TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; Penicillin-binding domain protein; KEGG: ccr:CC3570 penicillin-binding protein, 1A family YP_756393.1 PFAM: peptidase T2, asparaginase 2; KEGG: xcv:XCV0254 asparaginase precursor YP_756394.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: xac:XAC4038 transcriptional regulator LysR family YP_756395.1 SMART: Tetratricopeptide domain protein YP_756396.1 PFAM: carbonic anhydrase; KEGG: gsu:GSU2307 carbonic anhydrase YP_756397.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sme:SMc03207 putative aromatic amino acid degradation protein YP_756398.1 KEGG: sdn:Sden_0566 hypothetical protein YP_756399.1 KEGG: lma:LmjF35.0520 proteophosphoglycan ppg4 YP_756400.1 TIGRFAM: hemimethylated DNA binding protein; KEGG: eli:ELI_03565 hypothetical protein YP_756401.1 PFAM: Ppx/GppA phosphatase; KEGG: ccr:CC1614 hypothetical protein YP_756402.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: mag:amb3779 23S rRNA methylase YP_756404.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sdn:Sden_2422 biopolymer transport protein ExbD/TolR YP_756405.1 KEGG: hch:HCH_06888 hypothetical protein YP_756406.1 KEGG: sme:SMc00815 inositol-5-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase YP_756407.1 PFAM: protein of unknown function DUF1123; KEGG: rpd:RPD_2267 protein of unknown function DUF1123 YP_756408.1 KEGG: bur:Bcep18194_B0832 hypothetical protein YP_756409.1 PFAM: Fmu (Sun) domain protein; KEGG: mlo:mlr6944 SUN-family protein YP_756411.1 KEGG: dre:393171 tyrosylprotein sulfotransferase 1, like YP_756412.1 PFAM: sulfotransferase; KEGG: xtr:549785 tyrosylprotein sulfotransferase 2 YP_756413.1 PFAM: acyltransferase 3; KEGG: xcv:XCVd0126 putative membrane-associated acetyltransferase YP_756414.1 PFAM: YceI family protein; KEGG: hch:HCH_00246 hypothetical protein YP_756415.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_756416.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: bms:BR1492 cold-shock family protein YP_756418.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mlo:mlr3528 transcriptional regulator, GstR YP_756419.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: dar:Daro_1524 carboxymuconolactone decarboxylase YP_756420.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: ret:RHE_PE00173 putative pyridoxine 5'-phosphate oxidase protein YP_756421.1 PFAM: SlyX family protein; KEGG: bja:bsl2402 SlyX protein YP_756422.1 PFAM: LytTr DNA-binding region; KEGG: ccr:CC0551 hypothetical protein YP_756423.1 PFAM: alpha/beta hydrolase fold; KEGG: ccr:CC0552 hydrolase, alpha/beta hydrolase fold family YP_756424.1 KEGG: ccr:CC1645 hypothetical protein YP_756425.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: ccr:CC1646 RNA polymerase sigma-70 factor, ECF subfamily YP_756427.1 PFAM: NnrUfamily protein; KEGG: ccr:CC0706 hypothetical protein YP_756429.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: ccr:CC1649 RNA polymerase sigma-70 factor, ECF subfamily YP_756431.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_756432.1 KEGG: ccr:CC1652 hypothetical protein YP_756433.1 SMART: Pyrrolo-quinoline quinone; KEGG: ccr:CC1653 PQQ enzyme repeat family protein YP_756434.1 TIGRFAM: small GTP-binding protein; GTP-binding; PFAM: GTP-binding protein, HSR1-related; Miro domain protein; KEGG: ccr:CC1654 GTP-binding protein YP_756435.1 PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: mlo:mll7832 probable oxidoreductase YP_756436.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase, class-II; phosphoribosyltransferase; KEGG: ccr:CC1658 amidophosphoribosyltransferase YP_756437.1 PFAM: Colicin V production protein; KEGG: atc:AGR_C_1988 colicin V production protein (DedE protein) (PUR regulon 18 KDA protein) YP_756438.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_756439.1 KEGG: mlo:mll3997 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_756440.1 unwinds double stranded DNA YP_756441.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_756442.1 PFAM: ribosomal protein S18; KEGG: ccr:CC1668 30S ribosomal protein S18 YP_756443.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_756444.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: ccr:CC1674 malonyl CoA-acyl carrier protein transacylase YP_756446.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; Male sterility C-terminal domain; KEGG: ccr:CC1675 3-oxoacyl-(acyl-carrier-protein) reductase YP_756447.1 carries the fatty acid chain in fatty acid biosynthesis YP_756448.1 PFAM: beta-ketoacyl synthase; KEGG: ccr:CC1678 3-oxoacyl-(acyl-carrier-protein) synthase II YP_756449.1 PFAM: aminodeoxychorismate lyase; KEGG: ccr:CC1679 hypothetical protein YP_756450.1 TIGRFAM: conserved hypothetical protein; PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: ccr:CC1680 hypothetical protein YP_756451.1 KEGG: eli:ELI_09585 guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region YP_756452.1 TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: sil:SPO2458 dimethyladenosine transferase YP_756453.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_756454.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: ccr:CC1688 peptidyl-prolyl cis-trans isomerase family protein YP_756455.1 PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: ccr:CC1689 putative organic solvent tolerance protein YP_756456.1 PFAM: permease YjgP/YjgQ family protein; KEGG: ccr:CC1690 hypothetical protein YP_756457.1 PFAM: permease YjgP/YjgQ family protein; KEGG: ccr:CC1691 hypothetical protein YP_756458.1 PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: mag:amb3676 leucyl aminopeptidase YP_756459.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB YP_756461.1 KEGG: ccr:CC1694 hypothetical protein YP_756463.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: atc:AGR_C_2070 hypothetical ABC transporter ATP-binding protein YP_756464.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bja:bll2249 ubiquinone/menaquinone biosynthesis methyltransferase YP_756465.1 PFAM: nucleoside diphosphate kinase; KEGG: rsp:RSP_2894 nucleoside diphosphate kinase YP_756466.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: mlo:mll1430 hypothetical protein YP_756467.1 catalyzes the formation of inosine from adenosine YP_756469.1 PFAM: pentapeptide repeat protein; KEGG: tel:tll0709 hypothetical protein YP_756470.1 PFAM: peptidase S41; KEGG: sdn:Sden_2171 peptidase S41 YP_756471.1 PFAM: TPR repeat-containing protein; transcriptional regulator domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO1699 transcriptional regulator YP_756472.1 PFAM: Class I peptide chain release factor; KEGG: nwi:Nwi_2547 hypothetical protein YP_756473.1 KEGG: ret:RHE_CH00472 hypothetical conserved membrane protein YP_756474.1 PFAM: dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: mlo:mlr3941 hypothetical protein YP_756475.1 PFAM: regulatory protein, TetR; KEGG: pfl:PFL_4099 transcriptional regulator, TetR family YP_756476.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: rru:Rru_A2168 phosphoribosylglycinamide formyltransferase YP_756477.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_756478.1 KEGG: mag:amb2845 hypothetical protein YP_756479.1 KEGG: mlo:mlr7968 hypothetical protein YP_756480.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_756481.1 PFAM: Ppx/GppA phosphatase; KEGG: ccr:CC1708 hypothetical protein YP_756482.1 TIGRFAM: ribonuclease D; PFAM: 3'-5' exonuclease; KEGG: ccr:CC1704 ribonuclease D YP_756483.1 PFAM: major facilitator superfamily MFS_1; KEGG: eba:ebA3471 hypothetical protein YP_756484.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: ccr:CC1856 acyltransferase family protein YP_756485.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: ccr:CC1856 acyltransferase family protein YP_756486.1 PFAM: regulatory protein, TetR; KEGG: ccr:CC1855 transcriptional regulator, TetR family YP_756487.1 PFAM: flagellin domain protein; KEGG: ccr:CC0792 flagellin FljM YP_756488.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_756489.1 PFAM: pentapeptide repeat protein; KEGG: ccr:CC1891 pentapeptide repeat family protein YP_756490.1 PFAM: pentapeptide repeat protein; KEGG: ccr:CC1890 pentapeptide repeat family protein YP_756491.1 KEGG: ccr:CC1889 ribonucleotide reductase-related protein YP_756492.1 PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit; KEGG: rpc:RPC_2888 NADH:ubiquinone oxidoreductase 17.2 kD subunit YP_756493.1 KEGG: nwi:Nwi_1758 hypothetical protein YP_756494.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_756495.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_756496.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: nar:Saro_2078 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_756497.1 KEGG: ret:RHE_CH01871 3-dehydroquinate dehydratase protein; TIGRFAM: 3-dehydroquinate dehydratase, type II; PFAM: dehydroquinase, class II YP_756498.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: ccr:CC1881 thiamin biosynthesis ThiS YP_756499.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_756500.1 PFAM: DSBA oxidoreductase; KEGG: sil:SPOA0362 27kDa outer membrane protein YP_756501.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: bxe:Bxe_B2206 hypothetical protein YP_756502.1 PFAM: Endoribonuclease L-PSP; KEGG: rsp:RSP_0894 hypothetical protein YP_756503.1 KEGG: bja:bll3777 hypothetical protein YP_756504.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_756505.1 PFAM: ROK family protein; KEGG: ccr:CC2465 ROK family protein YP_756506.1 PFAM: response regulator receiver; KEGG: ccr:CC2463 polar differentiation response regulator YP_756507.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: ccr:CC2462 stalked-cell differentiation controlling protein YP_756508.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_756509.1 PFAM: major facilitator superfamily MFS_1; KEGG: bms:BRA0608 major facilitator family transporter YP_756510.1 PFAM: NUDIX hydrolase; KEGG: ccr:CC2457 hypothetical protein YP_756511.1 KEGG: ccr:CC2453 exoribonuclease, VacB and RNase II family; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein YP_756512.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_756513.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Sporulation domain protein; KEGG: bmb:BruAb1_1178 D-alanyl-D-alanine carboxypeptidase YP_756514.1 TIGRFAM: phasin family protein; KEGG: ccr:CC2160 hypothetical protein YP_756515.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: ccr:CC2467 conserved hypothetical protein YP_756516.1 KEGG: ccr:CC2468 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase YP_756517.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: ccr:CC0891 transcriptional regulator, AraC family YP_756518.1 KEGG: ccr:CC0892 hypothetical protein YP_756519.1 PFAM: helix-turn-helix domain protein; KEGG: sdn:Sden_1186 transciptional regulator YP_756520.1 TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; KEGG: mlo:mll4050 DNA helicase RecQ YP_756522.1 PFAM: histidine triad (HIT) protein; KEGG: ccr:CC2470 HIT family protein YP_756524.1 PFAM: protein of unknown function DUF482; KEGG: sme:SMc02105 hypothetical protein YP_756525.1 PFAM: peptidase M48, Ste24p; KEGG: ccr:CC1878 hypothetical protein YP_756526.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: ccr:CC1877 ribonuclease, Rne/Rng family protein YP_756527.1 PFAM: cell wall hydrolase/autolysin; KEGG: ccr:CC1876 N-acetylmuramoyl-L-alanine amidase YP_756528.1 KEGG: sme:SMc01334 probable penicillin-binding 1A transmembrane protein; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase YP_756529.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: mag:amb2813 protein chain release factor B YP_756530.1 PFAM: regulatory protein, ArsR; KEGG: ccr:CC2206 hypothetical protein YP_756531.1 KEGG: ccr:CC2207 hypothetical protein YP_756532.1 PFAM: acyltransferase 3; KEGG: bja:bll7034 MDO-like protein YP_756533.1 PFAM: protein of unknown function DUF583; KEGG: sil:SPO2231 hypothetical protein YP_756534.1 PFAM: peptidase M23B; KEGG: ccr:CC1872 peptidase, M23/M37 family YP_756535.1 PFAM: protein of unknown function DUF455; KEGG: atc:AGR_C_3363 hypothetical protein YP_756536.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mlo:mll0004 bacterioferritin YP_756537.1 KEGG: sil:SPO2227 hypothetical protein YP_756538.1 KEGG: ccr:CC1870 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib YP_756539.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_756540.1 KEGG: ccr:CC1867 hypothetical protein YP_756541.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: mag:amb3030 predicted transcriptional regulator YP_756542.1 PFAM: aminotransferase, class V; KEGG: ccr:CC1865 aminotransferase, class V YP_756543.1 with SufCD activates cysteine desulfurase SufS YP_756545.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: sme:SMc01776 putative auxin-binding protein YP_756547.1 KEGG: ccr:CC1862 ABC transporter, ATP-binding protein; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase YP_756548.1 PFAM: SufBD protein; KEGG: ccr:CC1861 hypothetical protein YP_756549.1 TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; KEGG: ccr:CC1860 aminotransferase, class V YP_756550.1 PFAM: protein of unknown function DUF59; KEGG: bms:BR0935 hypothetical protein YP_756551.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rpd:RPD_2461 FeS assembly scaffold SufA YP_756552.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: mag:amb0787 glutathione S-transferase YP_756553.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ccr:CC1850 GGDEF family protein YP_756554.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: ccr:CC1847 ATP-dependent RNA helicase, DEAD/DEAH box family YP_756555.1 PFAM: amidohydrolase; KEGG: eli:ELI_12495 hypothetical protein YP_756556.1 PFAM: amidohydrolase; KEGG: eli:ELI_12490 hypothetical protein YP_756557.1 KEGG: sru:SRU_1549 secreted protein containing N-terminal zinc-dependent carboxypeptidase related domain YP_756558.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_756559.1 TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Autotransporter beta- domain protein; KEGG: ccr:CC0288 hypothetical protein YP_756560.1 KEGG: bja:blr4949 glutamine synthetase I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp YP_756561.1 PFAM: nitrogen regulatory protein P-II; KEGG: mlo:mll0345 nitrogen regulatory protein P-II YP_756562.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: nwi:Nwi_1902 hypothetical protein YP_756563.1 NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate YP_756564.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: ilo:IL1790 Na+-driven multidrug efflux pump YP_756565.1 KEGG: rfr:Rfer_1421 thiopurine S-methyltransferase YP_756567.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_756568.1 PFAM: peptidase S14, ClpP; KEGG: sme:SMc01903 probable ATP-dependent CLP protease proteolytic subunit protein YP_756569.1 binds and unfolds substrates as part of the ClpXP protease YP_756570.1 KEGG: ccr:CC1960 ATP-dependent protease LA; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_756571.1 PFAM: prephenate dehydratase; Chorismate mutase; KEGG: sdn:Sden_2747 chorismate mutase YP_756572.1 PFAM: YiaAB two helix domain protein; KEGG: mlo:msr2457 hypothetical protein YP_756573.1 PFAM: PspA/IM30 family protein; KEGG: mlo:mlr2456 hypothetical protein YP_756574.1 PFAM: regulatory protein, TetR; KEGG: mlo:mll2454 probable transcriptional regulator YP_756575.1 TIGRFAM: dethiobiotin synthase; KEGG: ccr:CC1575 dethiobiotin synthetase YP_756576.1 KEGG: ccr:CC1576 8-amino-7-oxononanoate synthase; TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: aminotransferase, class I and II; aminotransferase class-III YP_756577.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate YP_756578.1 SMART: regulatory protein, ArsR; KEGG: rso:RSp1129 putative arsenical resistance operon repressor transcription regulator protein YP_756579.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: hch:HCH_04652 lactoylglutathione lyase YP_756580.1 KEGG: nar:Saro_0932 FF domain protein YP_756581.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: nar:Saro_0237 DEAD/DEAH box helicase-like YP_756582.1 PFAM: C4-dicarboxylate anaerobic carrier; AbgT putative transporter; KEGG: sru:SRU_1577 AbgT putative transporter family YP_756583.1 PFAM: protein of unknown function DUF599; KEGG: sme:SMc01257 hypothetical protein YP_756585.1 Catalyzes the transfer of electrons from NADH to quinone YP_756586.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_756587.1 Catalyzes the transfer of electrons from NADH to quinone YP_756588.1 Catalyzes the transfer of electrons from NADH to quinone YP_756589.1 Catalyzes the transfer of electrons from NADH to quinone YP_756590.1 part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase YP_756591.1 Catalyzes the transfer of electrons from NADH to quinone YP_756592.1 Catalyzes the transfer of electrons from NADH to quinone YP_756593.1 Catalyzes the transfer of electrons from NADH to quinone YP_756594.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: ccr:CC1941 NADH dehydrogenase I chain J YP_756595.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: nha:Nham_2210 NADH-ubiquinone oxidoreductase, chain 4L YP_756596.1 KEGG: ccr:CC1939 NADH dehydrogenase I chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I) YP_756597.1 Catalyzes the transfer of electrons from NADH to quinone YP_756598.1 KEGG: mlo:mll1352 NADH dehydrogenase I chain N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_756599.1 TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: ccr:CC1936 biotin protein ligase YP_756600.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_756601.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: ccr:CC1934 metallo-beta-lactamase family protein YP_756602.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ccr:CC1933 lactoylglutathione lyase, putative YP_756603.1 PFAM: protein of unknown function DUF1467; KEGG: nwi:Nwi_1870 protein of unknown function DUF1467 YP_756604.1 KEGG: nar:Saro_2397 hypothetical protein YP_756605.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_756606.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: ccr:CC1930 conserved hypothetical protein YP_756607.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ccr:CC1929 ABC transporter, ATP-binding protein YP_756608.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_756609.1 TIGRFAM: conserved hypothetical protein YP_756610.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_756611.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_756612.1 Catalyzes the phosphorylation of UMP to UDP YP_756613.1 PFAM: ribosome recycling factor; KEGG: rru:Rru_A1589 ribosome recycling factor YP_756614.1 KEGG: rru:Rru_A1590 di-trans-poly-cis-decaprenylcistransferase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_756615.1 PFAM: phosphatidate cytidylyltransferase; KEGG: bmb:BruAb1_1163 CdsA, phosphatidate cytidylyltransferase YP_756616.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_756617.1 TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: sil:SPO1668 membrane-associated zinc metalloprotease, putative YP_756618.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: ccr:CC1915 outer membrane protein YP_756619.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: ccr:CC1914 hypothetical protein YP_756620.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; KEGG: mlo:mll0635 UDP-3-O-[3-hydroxymyristoyl] glucosamine n-acyltransferase YP_756621.1 TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: ccr:CC1912 (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase YP_756622.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_756623.1 PFAM: protein of unknown function DUF1009; KEGG: ccr:CC1910 hypothetical protein YP_756624.1 KEGG: ccr:CC1909 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase, family 19 YP_756625.1 KEGG: bme:BMEI0836 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase YP_756626.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: mag:amb2803 glutamyl- and glutaminyl-tRNA synthetase YP_756627.1 PFAM: ComEC/Rec2-related protein; KEGG: sil:SPO2155 competence protein YP_756628.1 Represses a number of genes involved in the response to DNA damage YP_756629.1 PFAM: Indole-3-glycerol phosphate synthase; KEGG: rpa:RPA2891 indole-3-glycerol phosphate synthase YP_756630.1 KEGG: mlo:mlr0614 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase, family 3 YP_756631.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_756632.1 PFAM: protein of unknown function DUF610, YibQ; KEGG: mag:amb1809 hypothetical protein YP_756633.1 KEGG: jan:Jann_1882 anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein YP_756634.1 KEGG: ccr:CC1894 rotamase family protein YP_756635.1 PFAM: triosephosphate isomerase; KEGG: rsp:RSP_1947 triosephosphate isomerase YP_756636.1 KEGG: mag:amb2829 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_756637.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: rru:Rru_A1888 preprotein translocase SecG subunit YP_756638.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_756639.1 PFAM: Pyridoxal-dependent decarboxylase; KEGG: mlo:mll0712 aromatic amino acid decarboxylase YP_756640.1 KEGG: cbu:CBU_0395 lipoprotein, putative YP_756641.1 TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: bmb:BruAb1_1758 RpmF, ribosomal protein L32 YP_756642.1 PFAM: formate-tetrahydrofolate ligase, FTHFS; KEGG: sme:SMc02728 probable formate--tetrahydrofolate ligase protein YP_756643.1 PFAM: enolase; KEGG: bmb:BruAb1_1138 enolase YP_756644.1 PFAM: Septum formation initiator; KEGG: rru:Rru_A1882 septum formation initiator YP_756645.1 PFAM: dehydrogenase, E1 component; KEGG: ccr:CC1726 pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase alpha subunit YP_756646.1 KEGG: bur:Bcep18194_A4478 hypothetical protein YP_756647.1 KEGG: ccr:CC2496 hypothetical protein YP_756648.1 catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase YP_756649.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: sde:Sde_3356 hypothetical protein YP_756650.1 KEGG: ccr:CC1729 pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein YP_756651.1 PFAM: thioesterase superfamily protein; KEGG: rru:Rru_A1719 thioesterase superfamily YP_756652.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: tcx:Tcr_0041 2OG-Fe(II) oxygenase YP_756653.1 KEGG: mlo:mlr4389 hypothetical protein YP_756654.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: bja:blr5564 hypothetical protein YP_756655.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; FAD dependent oxidoreductase; KEGG: sil:SPO2222 pyruvate dehydrogenase complex, E3 component, lipoamide dehydrogenase, putative YP_756656.1 KEGG: mba:Mbar_A3298 hypothetical protein YP_756657.1 PFAM: AMP-dependent synthetase and ligase; KEGG: ccr:CC1733 Aas bifunctional protein, putative YP_756658.1 KEGG: mbu:Mbur_0505 hypothetical protein YP_756659.1 KEGG: mbu:Mbur_0505 hypothetical protein YP_756660.1 KEGG: ccr:CC1144 aminopeptidase, putative YP_756661.1 KEGG: pha:PSHAb0058 putative orphan protein YP_756662.1 SMART: nuclear protein SET; KEGG: tbr:Tb09.211.1620 hypothetical protein YP_756664.1 KEGG: bja:blr8090 hypothetical protein YP_756665.1 KEGG: tcx:Tcr_1422 hypothetical protein YP_756666.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_756667.1 PFAM: cyclase/dehydrase; KEGG: ccr:CC1736 hypothetical protein YP_756668.1 PFAM: CinA domain protein; KEGG: rsp:RSP_2833 putative competence-damaged inducible protein YP_756669.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MECDP-synthase; KEGG: rru:Rru_A1674 bifunctional enzyme, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_756670.1 TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: rpa:RPA2591 putative nitrogen regulation protein nifR3 YP_756671.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpa:RPA2592 nitrogen regulatory signal transduction histidine kinase NtrB YP_756672.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; KEGG: ccr:CC1741 nitrogen regulation protein NR(I) YP_756673.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; KEGG: ccr:CC1742 nitrogen regulation protein NtrY YP_756674.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: ccr:CC1743 nitrogen regulation protein NtrX YP_756675.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_756676.1 PFAM: cation transporter; KEGG: mba:Mbar_A3423 trk system potassium uptake protein YP_756677.1 catalyzes the transamination of D-amino acids and their alpha-keto acids YP_756678.1 Stimulates the elongation of poly(A) tails YP_756679.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; KEGG: mag:amb2373 GTPase YP_756680.1 TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: ccr:CC1747 mazg protein YP_756681.1 KEGG: jan:Jann_1274 beta-lactamase-like YP_756682.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: ccr:CC1822 urease/pyrimidinase family protein YP_756683.1 KEGG: ccr:CC1823 DNA polymerase III, delta prime subunit YP_756684.1 PFAM: thymidylate kinase; KEGG: mag:amb2450 thymidylate kinase YP_756685.1 PFAM: beta-lactamase; peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: rru:Rru_A1704 serine-type D-Ala-D-Ala carboxypeptidase YP_756686.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: ccr:CC1825 rare lipoprotein A YP_756687.1 KEGG: cps:CPS_3337 putative adenylate cyclase YP_756688.1 PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: mlo:mlr7777 similar to ribosomal protein S6-glutamic acid ligase YP_756689.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mlo:mlr7776 hypothetical protein YP_756690.1 PFAM: GCN5-related N-acetyltransferase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: eli:ELI_07705 YhcX YP_756691.1 KEGG: cps:CPS_4054 hypothetical protein YP_756692.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_756693.1 PFAM: Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: mag:amb3069 hypothetical protein YP_756694.1 KEGG: cps:CPS_3005 hypothetical protein YP_756695.1 PFAM: peptidase M14, carboxypeptidase A; KEGG: ilo:IL1267 predicted carboxypeptidase, Zn dependent YP_756696.1 PFAM: protein of unknown function DUF188; KEGG: rpa:RPA2191 hypothetical protein YP_756697.1 PFAM: peptidase M2, peptidyl-dipeptidase A; KEGG: eli:ELI_07405 zinc-dependent metallopeptidase YP_756698.1 KEGG: sil:SPO2057 hypothetical protein YP_756699.1 PFAM: tryptophan 2,3-dioxygenase; KEGG: pol:Bpro_3590 tryptophan 2,3-dioxygenase YP_756700.1 PFAM: cyclase family protein; KEGG: bur:Bcep18194_A5908 putative cyclase YP_756701.1 TIGRFAM: kynureninase; PFAM: aminotransferase, class V; KEGG: mlo:mll0621 probable kynureninase (kyurenine hydrolase) YP_756702.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: rru:Rru_A3463 transcriptional regulator, AsnC family YP_756703.1 KEGG: xcb:XC_1255 L-serine dehydratase; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain YP_756704.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cps:CPS_1962 efflux transporter, RND family, MFP subunit YP_756705.1 PFAM: acriflavin resistance protein; KEGG: cps:CPS_1961 AcrB/AcrD/AcrF family protein YP_756706.1 KEGG: ccr:CC2406 3-oxoadipate CoA-transferase, beta subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase YP_756707.1 KEGG: rsp:RSP_1914 3-ketoacid CoA transferase alpha subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase YP_756708.1 PFAM: ribonuclease BN; KEGG: ccr:CC1840 ribonuclease BN, putative YP_756709.1 KEGG: mag:amb2069 predicted transcriptional regulator YP_756712.1 PFAM: pentapeptide repeat protein; KEGG: ccr:CC2260 pentapeptide repeat family protein YP_756713.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ccr:CC1841 hypothetical protein YP_756714.1 PFAM: response regulator receiver; KEGG: ccr:CC1842 response regulator, putative YP_756715.1 TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: ccr:CC1844 transcription-repair coupling factor YP_756716.1 PFAM: protein of unknown function DUF339; KEGG: ccr:CC1845 hypothetical protein YP_756717.1 PFAM: helicase domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; DEAD/DEAH box helicase domain protein; KEGG: mag:amb2467 RecG-like helicase YP_756718.1 PFAM: protein of unknown function DUF502; KEGG: mlo:mll0832 hypothetical protein YP_756719.1 KEGG: ccr:CC1433 hypothetical protein YP_756720.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_756721.1 PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: bur:Bcep18194_A5488 deoxyribodipyrimidine photolyase YP_756722.1 KEGG: rru:Rru_A0730 hypothetical protein YP_756723.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis YP_756724.1 PFAM: Rhodanese domain protein; KEGG: sil:SPO3719 thiosulfate sulfurtransferase, putative YP_756725.1 TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: ccr:CC1424 cystathionine beta-lyase YP_756726.1 PFAM: ETC complex I subunit conserved region; KEGG: ccr:CC1389 NADH-ubiquinone oxidoreductase-related protein YP_756727.1 PFAM: protein of unknown function DUF192; KEGG: mag:amb0899 hypothetical protein YP_756728.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: rpc:RPC_2791 cold-shock DNA-binding domain protein YP_756729.1 KEGG: syw:SYNW1504 hypothetical protein YP_756732.1 PFAM: helix-turn-helix domain protein; KEGG: bqu:BQ02090 transcriptional regulator YP_756733.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: xcv:XCVd0103 site-specific recombinase YP_756734.1 PFAM: Hemolysin-type calcium-binding region; Cadherin; KEGG: sil:SPO3673 type I secretion target repeat protein YP_756735.1 PFAM: phage integrase family protein; KEGG: rru:Rru_A3316 phage integrase YP_756736.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: ccr:CC1386 single-stranded-DNA-specific exonuclease RecJ YP_756737.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_756739.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: ccr:CC1380 poly-beta-hydroxybutyrate polymerase YP_756740.1 KEGG: ccr:CC3274 ABC transporter, HlyB/MsbA family; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase YP_756741.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: hch:HCH_03238 SAM-dependent methyltransferase YP_756742.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sil:SPO3490 transcriptional regulator, LysR family YP_756743.1 PFAM: ribosomal protein S9; KEGG: ccr:CC1377 30S ribosomal protein S9 YP_756744.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_756745.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: protein of unknown function DUF839; KEGG: ccr:CC1375 hypothetical protein YP_756746.1 KEGG: ccr:CC1295 3-phytase, fusion, putative YP_756748.1 PFAM: Abortive infection protein; KEGG: bca:BCE3288 CAAX amino terminal protease family family YP_756749.1 PFAM: cytochrome oxidase assembly; KEGG: ccr:CC1374 cytochrome c oxidase assembly protein, putative YP_756750.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ccr:CC3525 ferredoxin reductase YP_756751.1 PFAM: regulatory protein, MerR; KEGG: rpc:RPC_2678 transcriptional regulator, MerR family YP_756752.1 TIGRFAM: integration host factor, alpha subunit; PFAM: histone family protein DNA-binding protein; KEGG: rsp:RSP_2611 histone-like DNA-binding protein (IHF) YP_756753.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_756754.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_756755.1 PFAM: Ubiquinol-cytochrome C chaperone; KEGG: mag:amb2350 CBP3 protein, mitochondrial precursor YP_756756.1 KEGG: ccr:CC1365 hypothetical protein YP_756757.1 PFAM: beta-lactamase; KEGG: vfi:VF0968 beta-lactamase family protein YP_756758.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_756760.1 KEGG: rru:Rru_A1820 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein YP_756761.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_756762.1 PFAM: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: rsp:RSP_0756 6,7-dimethyl-8-ribityllumazine synthase beta chain YP_756763.1 PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: rru:Rru_A1823 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_756764.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_756765.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: mag:amb2341 riboflavin biosynthesis protein RibD YP_756766.1 TIGRFAM: Ribonucleotide reductase regulator NrdR-like; PFAM: ATP-cone domain protein; KEGG: ccr:CC1358 ATP-cone domain protein YP_756767.1 PFAM: Orn/Lys/Arg decarboxylase, major region; glycine hydroxymethyltransferase; KEGG: mag:amb2339 glycine/serine hydroxymethyltransferase YP_756768.1 PFAM: ROSMUCR transcriptional regulator; KEGG: ccr:CC1356 transcriptional regulator YP_756770.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine YP_756771.1 PFAM: regulatory protein, MarR; KEGG: bmb:BruAb1_0777 transcriptional regulator, MarR Family YP_756772.1 KEGG: ccr:CC1354 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding YP_756773.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mag:amb3583 enoyl-CoA hydratase/carnithine racemase YP_756774.1 KEGG: gvi:gll1679 hypothetical protein YP_756775.1 TIGRFAM: prevent-host-death family protein; KEGG: jan:Jann_1433 prevent-host-death protein YP_756776.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: ccr:CC1350 acyl-CoA dehydrogenase YP_756777.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_756779.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: ilo:IL0599 cystathionine gamma-synthase YP_756780.1 PFAM: protein of unknown function UPF0126; KEGG: ret:RHE_CH00105 hypothetical conserved membrane protein YP_756782.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: ret:RHE_CH02433 probable 3-hydroxyisobutyrate dehydrogenase protein YP_756783.1 PFAM: peptidase S45, penicillin amidase; KEGG: rme:Rmet_1578 peptidase S45, penicillin amidase YP_756784.1 PFAM: flavin reductase domain protein, FMN-binding; KEGG: rsp:RSP_2607 nitrilotriacetate monooxygenase component B YP_756785.1 PFAM: OmpA/MotB domain protein; KEGG: ccr:CC1573 chemotaxis MotB protein YP_756786.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: lic:LIC10664 hypothetical protein YP_756787.1 PFAM: regulatory protein, ArsR; Helix-turn-helix, type 11 domain protein; KEGG: sme:SMb20608 putative transcriptional regulator, ArsR family protein YP_756788.1 PFAM: Citrate transporter; TrkA-C domain protein; KEGG: pca:Pcar_0606 TrkA domain protein YP_756789.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_756790.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: ppr:PBPRA1402 hypothetical extracellular solute-binding protein,family 7 YP_756791.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: tcx:Tcr_2006 tripartite ATP-independent periplasmic transporter, DctQ component YP_756792.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: tcx:Tcr_2007 TRAP dicarboxylate transporter-DctM subunit YP_756793.1 PFAM: protein of unknown function UPF0118; KEGG: noc:Noc_0491 hypothetical protein YP_756795.1 PFAM: peptidase M48, Ste24p; KEGG: rpc:RPC_4377 peptidase M48, Ste24p YP_756796.1 PFAM: LemA family protein; KEGG: rpb:RPB_4313 LemA YP_756797.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_756798.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: sil:SPO3196 DNA repair protein RecO, putative YP_756799.1 PFAM: protein of unknown function DUF559; KEGG: mca:MCA0550 DNA methyltransferase YP_756800.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_756801.1 PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: ccr:CC1560 ribonuclease III YP_756802.1 TIGRFAM: holo-acyl-carrier-protein synthase; Phosphopantethiene-protein transferase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: ret:RHE_CH01388 holo-[acyl-carrier-protein] synthase protein YP_756803.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_756804.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_756805.1 KEGG: ccr:CC1553 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region YP_756806.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_756807.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: ccr:CC1551 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_756808.1 PFAM: protein of unknown function DUF88; KEGG: rru:Rru_A1859 protein of unknown function DUF88 YP_756809.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: nha:Nham_2258 uracil-DNA glycosylase superfamily YP_756811.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: darR; DarR YP_756812.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_756813.1 KEGG: ccr:CC1195 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase YP_756814.1 PFAM: Lytic transglycosylase, catalytic; Tetratricopeptide TPR_4; KEGG: mag:amb2539 soluble lytic murein transglycosylase and related regulatory protein YP_756815.1 PFAM: protein of unknown function UPF0074; regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: rba:RB4967 probable DeoR-family transcriptional regulator YP_756816.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_0800 hypothetical protein YP_756818.1 PFAM: helix-turn-helix domain protein; KEGG: cvi:CV0910 hypothetical protein YP_756819.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: ccr:CC3105 threonine dehydratase YP_756820.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rso:RSc1749 acyl-CoA synthase YP_756821.1 KEGG: det:DET0043 hypothetical protein YP_756822.1 PFAM: alpha/beta hydrolase fold; peptidase S15; KEGG: sru:SRU_2724 lipoprotein, putative YP_756823.1 PFAM: nitroreductase; KEGG: sdn:Sden_0863 nitroreductase YP_756824.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism YP_756825.1 PFAM: FAD dependent oxidoreductase; KEGG: ccr:CC3174 hypothetical protein YP_756826.1 KEGG: ret:RHE_CH03032 hypothetical protein YP_756827.1 PFAM: amidohydrolase; KEGG: gox:GOX1276 organophopsphate acid anhydrase YP_756828.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine YP_756829.1 PFAM: beta-lactamase; KEGG: aba:Acid345_0612 beta-lactamase YP_756831.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_756832.1 PFAM: N-formylglutamate amidohydrolase; KEGG: rru:Rru_A1300 N-formylglutamate deformylase YP_756833.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_756834.1 KEGG: ret:RHE_PE00073 imidazolonepropionase protein; TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; Amidohydrolase 3 YP_756835.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate YP_756836.1 TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: atc:AGR_C_262 histidine utilization repressor VC1206 YP_756838.1 PFAM: LytTr DNA-binding region; KEGG: ccr:CC3036 hypothetical protein YP_756839.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_1927 TonB dependent receptor YP_756840.1 PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: xoo:XOO2262 phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase bifunctional enzyme YP_756841.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_756842.1 TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis; KEGG: xcb:XC_2376 phosphoribosylformimino-5-aminoimidazole carboxam YP_756843.1 TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; SNO glutamine amidotransferase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: xoo:XOO2259 amidotransferase YP_756844.1 PFAM: imidazoleglycerol-phosphate dehydratase; histidinol dehydrogenase; KEGG: sec:SC2082 histidinal dehydrogenase (also histidinol dehydrogenase activity) YP_756845.1 PFAM: ATP phosphoribosyltransferase; Histidine biosynthesis HisG, C-terminal domain; KEGG: ppr:PBPRA1092 putative ATP phosphoribosyltransferase YP_756846.1 TIGRFAM: TrpR like protein, YerC/YecD; PFAM: Trp repressor; KEGG: chy:CHY_1082 hypothetical protein YP_756847.1 PFAM: regulatory protein, ArsR; KEGG: rpc:RPC_3223 transcriptional regulator, ArsR family YP_756848.1 PFAM: Rhodanese domain protein; KEGG: cyb:CYB_1925 rhodanese family protein YP_756849.1 PFAM: beta-lactamase domain protein; KEGG: nar:Saro_1205 beta-lactamase-like YP_756850.1 TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: sil:SPO1956 sulfate permease YP_756851.1 TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: hch:HCH_04804 acetate--CoA ligase YP_756854.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle YP_756855.1 TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: nha:Nham_1097 isocitrate lyase YP_756856.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: rpb:RPB_4200 transcriptional regulator, XRE family YP_756858.1 TIGRFAM: putative addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: ccr:CC0874 conserved hypothetical protein YP_756859.1 PFAM: plasmid stabilization system; KEGG: nmu:Nmul_B2801 plasmid stabilization system YP_756860.1 KEGG: sma:SAV2953 hypothetical protein YP_756861.1 KEGG: ccr:CC1444 hypothetical protein YP_756863.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: eli:ELI_09015 TonB-dependent receptor YP_756864.1 PFAM: beta-lactamase; KEGG: bmb:BruAb2_0256 hypothetical protein YP_756865.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: pol:Bpro_5304 glucose-methanol-choline oxidoreductase YP_756866.1 PFAM: aldehyde dehydrogenase; KEGG: mlo:mlr4051 probable coniferyl aldehyde dehydrogenase YP_756867.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: eli:ELI_07170 3-oxoacyl-[acyl-carrier-protein] reductase YP_756868.1 PFAM: response regulator receiver; KEGG: tde:TDE0492 sensor histidine kinase/response regulator YP_756869.1 KEGG: ret:RHE_CH00424 putative carboxyphosphonoenolpyruvate phosphonomutase protein YP_756870.1 KEGG: sme:SMa0128 hypothetical protein YP_756871.1 PFAM: D-aminoacylase domain protein; Amidohydrolase 3; KEGG: bja:bll1004 hypothetical protein YP_756872.1 PFAM: Bile acid:sodium symporter; KEGG: sil:SPO0797 bile acid transporter family protein YP_756873.1 PFAM: helix-turn-helix, HxlR type; KEGG: bbr:BB2332 putative transcriptional regulator YP_756874.1 SMART: Parallel beta-helix repeat; KEGG: ade:Adeh_2620 parallel beta-helix repeat protein YP_756876.1 PFAM: Fibronectin, type III domain protein; peptidase M28; KEGG: ilo:IL1071 probable aminopeptidase fused to fibronectin type 3 domain YP_756877.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rso:RSc1203 NADPH quinone oxidoreductase, putative YP_756878.1 PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: sil:SPO1965 oxidoreductase, short chain dehydrogenase/reductase family YP_756879.1 PFAM: MaoC domain protein dehydratase; KEGG: eli:ELI_12095 MaoC domain protein YP_756880.1 PFAM: AMP-dependent synthetase and ligase; KEGG: nar:Saro_0681 AMP-dependent synthetase and ligase YP_756881.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sil:SPO0879 acyl-CoA dehydrogenase family protein YP_756882.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sil:SPO1957 oxidoreductase, short chain dehydrogenase/reductase family YP_756883.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rpb:RPB_4674 acyl-CoA dehydrogenase-like YP_756884.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rme:Rmet_4574 acyl-CoA dehydrogenase-like protein YP_756885.1 PFAM: fatty acid desaturase; KEGG: cme:CMM045C stearoyl-CoA desaturase YP_756886.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: nwi:Nwi_1191 cytochrome c-type biogenesis protein CycH / CcmH YP_756887.1 PFAM: cytochrome C biogenesis protein; KEGG: nha:Nham_1440 cytochrome c biogenesis protein YP_756888.1 TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: mag:amb4201 thiol-disulfide isomerase and thioredoxins YP_756889.1 PFAM: cytochrome c assembly protein; KEGG: rru:Rru_A0035 cytochrome c-type biogenesis protein CcmF YP_756890.1 PFAM: Na+/solute symporter; KEGG: vvy:VVA1642 sodium/proline symporter YP_756891.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sil:SPO1955 glutaryl-CoA dehydrogenase YP_756892.1 PFAM: Tetratricopeptide TPR_4; KEGG: xcv:XCV1461 hypothetical protein YP_756893.1 TIGRFAM: pseudoazurin; PFAM: blue (type 1) copper domain protein; KEGG: atc:AGR_L_2859 hypothetical protein YP_756895.1 KEGG: aba:Acid345_0515 hypothetical protein YP_756896.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: aci:ACIAD0849 putative dehydrogenase YP_756897.1 PFAM: protein of unknown function DUF344; KEGG: reu:Reut_C6193 protein of unknown function DUF344 YP_756898.1 KEGG: eba:ebD23 hypothetical protein YP_756899.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sma:SAV7438 oxidoreductase YP_756900.1 PFAM: cytochrome P450; KEGG: ccr:CC0946 cytochrome P450 family protein YP_756901.1 KEGG: pae:PA1293 hypothetical protein YP_756902.1 PFAM: Peptidase M15A; KEGG: bte:BTH_II1066 hypothetical protein YP_756903.1 PFAM: alpha/beta hydrolase fold; KEGG: ccr:CC0355 hydrolase, putative YP_756904.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_A3284 enoyl-CoA hydratase/isomerase YP_756905.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: cyb:CYB_2270 oxidoreductase, 2OG-Fe(II) oxygenase family YP_756906.1 KEGG: ana:all3941 unknown protein YP_756907.1 PFAM: Rhodanese domain protein; KEGG: gox:GOX0895 hypothetical protein YP_756908.1 PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; KEGG: eli:ELI_08380 hypothetical protein YP_756909.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ccr:CC1970 TonB-dependent receptor YP_756910.1 PFAM: peptidase S9B, dipeptidylpeptidase IV domain protein; amidohydrolase; WD40 domain protein beta Propeller; Amidohydrolase 3; KEGG: ccr:CC0116 hypothetical protein YP_756911.1 PFAM: sugar transferase; KEGG: ccr:CC2425 hypothetical protein YP_756912.1 KEGG: ppu:PP1682 glycosyl hydrolase, family 5 YP_756913.1 KEGG: sma:SAV6574 hypothetical protein YP_756914.1 PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: ccr:CC2426 polysaccharide biosynthesis protein, putative YP_756915.1 PFAM: glycosyl transferase, family 2; KEGG: ccr:CC2427 glycosyl transferase family protein YP_756916.1 PFAM: polysaccharide deacetylase; KEGG: ccr:CC2428 polysaccharide deacetylase YP_756917.1 PFAM: glycosyl transferase, family 2; KEGG: ccr:CC2277 glycosyl transferase family protein YP_756918.1 PFAM: O-antigen polymerase; KEGG: ccr:CC2429 hypothetical protein YP_756919.1 KEGG: ccr:CC2430 hypothetical protein YP_756920.1 PFAM: lipopolysaccharide biosynthesis; KEGG: ccr:CC2431 hypothetical protein YP_756921.1 PFAM: polysaccharide export protein; KEGG: ccr:CC2432 conserved hypothetical protein YP_756922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_0775 ABC transporter, ATP-binding protein YP_756923.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: bfs:BF1608 putative HlyD-family transporter component YP_756924.1 PFAM: Calcium-binding EF-hand-containing protein; KEGG: hsa:2978 guanylate cyclase activator 1A (retina) YP_756925.1 KEGG: aba:Acid345_1285 ABC efflux pump, inner membrane subunit YP_756926.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: ccr:CC2433 hypothetical protein YP_756928.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: nar:Saro_1330 2OG-Fe(II) oxygenase YP_756929.1 PFAM: MscS Mechanosensitive ion channel; KEGG: ret:RHE_PC00077 hypothetical protein YP_756930.1 PFAM: protein of unknown function DUF559; KEGG: mca:MCA0550 DNA methyltransferase YP_756931.1 KEGG: bja:bll5194 hypothetical protein YP_756932.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/Yqey domain protein; GatB N-terminal region; GatB, central domain protein; KEGG: ccr:CC2436 glutamyl-tRNA(Gln) amidotransferase subunit B YP_756936.1 KEGG: ccr:CC2437 glutamyl-tRNA(Gln) amidotransferase subunit A; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase YP_756937.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_756938.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase, RNase H domain protein fold; KEGG: rpa:RPA3113 conserved hypothetical protein YP_756939.1 PFAM: Auxin Efflux Carrier; KEGG: rpc:RPC_2254 auxin efflux carrier YP_756940.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: cho:Chro.40415 hypothetical protein YP_756941.1 KEGG: eli:ELI_09855 coenzyme PQQ synthesis protein B YP_756942.1 PFAM: GCN5-related N-acetyltransferase; KEGG: aba:Acid345_2126 GCN5-related N-acetyltransferase YP_756943.1 TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: bmb:BruAb2_0625 PyrB, aspartate carbamoyltransferase YP_756944.1 PFAM: amidohydrolase; KEGG: ccr:CC2444 aspartate transcarbamoylase, pyrC' subunit YP_756945.1 PFAM: protein of unknown function DUF205; KEGG: mag:amb3613 predicted membrane protein YP_756946.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: ccr:CC2447 dprA protein YP_756948.1 PFAM: heat shock protein DnaJ domain protein; KEGG: mag:amb0578 hypothetical protein YP_756949.1 KEGG: rsp:RSP_1042 chromosome partitioning protein YP_756950.1 PFAM: Sporulation domain protein; KEGG: rru:Rru_A2353 tetratricopeptide TPR_4 YP_756951.1 KEGG: mlo:mll0196 pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase YP_756952.1 PFAM: glutamine cyclotransferase; KEGG: xcb:XC_1901 glutamine cyclotransferase YP_756953.1 PFAM: Uncharacterised conserved protein UCP032025; KEGG: atc:AGR_C_3227 hypothetical protein YP_756956.1 KEGG: ccr:CC2276 hypothetical protein YP_756957.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: ccr:CC2168 putative propionyl-CoA carboxylase alpha chain YP_756958.1 PFAM: protein of unknown function DUF817; KEGG: eli:ELI_05930 hypothetical protein YP_756959.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ccr:CC2169 enoyl-CoA hydratase/isomerase family protein YP_756962.1 PFAM: SOUL heme-binding protein; KEGG: ccr:CC2549 hypothetical protein YP_756963.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: ccr:CC0277 hypothetical protein YP_756964.1 PFAM: carboxyl transferase; KEGG: bbr:BB4948 carboxyltransferase subunit of acetyl-CoA carboxylase YP_756965.1 KEGG: sth:STH1871 hypothetical protein YP_756967.1 PFAM: cyclic nucleotide-binding; Patatin; KEGG: ccr:CC2171 hypothetical protein YP_756968.1 PFAM: protein of unknown function DUF1311; KEGG: ppu:PP0821 hypothetical protein YP_756969.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpb:RPB_3933 acyl-CoA dehydrogenase-like YP_756970.1 PFAM: glycoside hydrolase, family 24; KEGG: ccr:CC2173 lysozyme family protein YP_756971.1 PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: dre:569221 similar to actinfilin YP_756972.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: ccr:CC2174 magnesium transporter YP_756974.1 PFAM: surface presentation of antigens (SPOA) protein; KEGG: ccr:CC2175 FliN family protein YP_756975.1 TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: ccr:CC2176 lipoate-protein ligase B YP_756977.1 PFAM: protein of unknown function DUF805; KEGG: ccr:CC2778 hypothetical protein YP_756978.1 PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: ccr:CC2179 propionyl-CoA carboxylase, alpha subunit YP_756979.1 PFAM: Ion transport 2 domain protein,; KEGG: mlo:mll6635 hypothetical protein YP_756980.1 KEGG: gvi:glr1817 hypothetical protein YP_756981.1 PFAM: fatty acid desaturase; KEGG: eli:ELI_10325 hypothetical protein YP_756982.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: neu:NE0712 DUF172 YP_756983.1 TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: plasmid stabilization system; Addiction module toxin, Txe/YoeB; KEGG: atc:AGR_C_3658 hypothetical protein YP_756984.1 PFAM: carboxyl transferase; KEGG: ccr:CC1975 propionyl-CoA carboxylase beta chain YP_756985.1 KEGG: sma:SAV6574 hypothetical protein YP_756986.1 KEGG: syd:Syncc9605_1752 possible pectate lyase YP_756987.1 PFAM: protein of unknown function UPF0157; KEGG: cps:CPS_2738 hypothetical protein YP_756988.1 KEGG: gox:GOX0879 hypothetical protein YP_756989.1 PFAM: ATP12 ATPase; KEGG: rru:Rru_A2656 ATP12 ATPase YP_756990.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mag:amb3103 predicted phosphatase YP_756991.1 PFAM: protein of unknown function DUF1244; KEGG: pfo:Pfl_0889 protein of unknown function DUF1244 YP_756993.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: ccr:CC1980 ribosomal large subunit pseudouridine synthase C YP_756994.1 PFAM: Camphor resistance CrcB protein; KEGG: ccr:CC1981 crcB protein YP_756995.1 KEGG: gox:GOX1009 hypothetical protein YP_756996.1 KEGG: mlo:mll3904 hypothetical protein YP_756997.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: ccr:CC1283 ATPase, AAA family YP_756998.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mpa:MAP0826c PhnB protein YP_756999.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: rpb:RPB_2323 peptidase S1C, Do YP_757000.1 PFAM: ribosomal protein L17; KEGG: bms:BR1208 ribosomal protein L17 YP_757001.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_757002.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_757003.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_757004.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_757005.1 TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: bms:BR1213 preprotein translocase, SecY subunit YP_757006.1 PFAM: ribosomal protein L15; KEGG: eli:ELI_08090 ribosomal protein L15 YP_757007.1 PFAM: ribosomal protein L30; KEGG: sil:SPO0503 ribosomal protein L30 YP_757008.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_757009.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: ccr:CC1264 50S ribosomal protein L18 YP_757010.1 PFAM: ribosomal protein L6; KEGG: bja:bll5385 50S ribosomal protein L6 YP_757011.1 PFAM: ribosomal protein S8; KEGG: mlo:mlr0310 30S ribosomal protein S8 YP_757012.1 PFAM: ribosomal protein S14; KEGG: sme:SMc01296 30S ribosomal protein S14 YP_757013.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_757014.1 KEGG: rru:Rru_A2677 ribosomal protein L24; TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; SMART: KOW (Kyrpides, Ouzounis, Woese) domain protein YP_757015.1 TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: nha:Nham_1555 ribosomal protein L14 YP_757016.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_757017.1 PFAM: ribosomal protein L29; KEGG: rru:Rru_A2680 ribosomal protein L29 YP_757018.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_757019.1 KEGG: bme:BMEI0763 SSU ribosomal protein S3P; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3-C-terminal domain protein; KH, type 2 domain protein; Ribosomal protein S3, N-terminal domain; SMART: KH domain protein YP_757020.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_757021.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: rru:Rru_A2684 ribosomal protein S19 YP_757022.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_757023.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_757024.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_757025.1 PFAM: ribosomal protein L3; KEGG: sil:SPO3825 ribosomal protein L3 YP_757026.1 PFAM: ribosomal protein S10; KEGG: rru:Rru_A2689 ribosomal protein S10 YP_757027.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_757028.1 TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; elongation factor G, domain IV; KEGG: ccr:CC3200 translation elongation factor G YP_757029.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_757030.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_757031.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_757032.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_757033.1 PFAM: ribosomal protein L7/L12; KEGG: eli:ELI_14420 ribosomal protein L7/L12 YP_757034.1 PFAM: ribosomal protein L10; KEGG: sil:SPO3510 ribosomal protein L10 YP_757035.1 PFAM: ribosomal protein L1; KEGG: rpd:RPD_3200 ribosomal protein L1 YP_757036.1 binds directly to 23S ribosomal RNA YP_757037.1 KEGG: ccr:CC3205 transcription antitermination protein NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein YP_757038.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: atc:AGR_C_3578 preprotein translocase, SecE subunit YP_757039.1 PFAM: Methyltransferase type 11; KEGG: mma:MM0892 putative methyltransferase YP_757040.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: eli:ELI_01455 hypothetical protein YP_757041.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ccr:CC2818 TPR domain protein YP_757042.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: eli:ELI_00455 TPR domain protein YP_757043.1 SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: ccr:CC2488 hypothetical protein YP_757044.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_757045.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpc:RPC_3525 diguanylate cyclase (GGDEF domain) YP_757046.1 KEGG: rpc:RPC_0402 excinuclease ABC, C subunit-like YP_757047.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: mag:amb3149 rRNA methylase YP_757048.1 KEGG: bfr:BF3230 hypothetical protein YP_757049.1 PFAM: protein of unknown function DUF819; KEGG: ath:At5g24000 expressed protein YP_757050.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: atc:AGR_C_3433 glutathione S-transferase gst YP_757051.1 PFAM: Endoribonuclease L-PSP; KEGG: hma:rrnAC2866 hypothetical protein YP_757052.1 KEGG: eli:ELI_05285 amidohydrolase family protein; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_757053.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ccr:CC3280 ABC transporter, ATP-binding protein YP_757054.1 KEGG: ccr:CC3279 ABC transporter protein, putative YP_757056.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: cps:CPS_4968 peptidyl-prolyl cis-trans isomerase, cyclophilin-type YP_757057.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_757058.1 KEGG: ccr:CC1479 hypothetical protein YP_757059.1 KEGG: mag:amb2998 hypothetical protein YP_757060.1 KEGG: sme:SMc03789 hypothetical protein YP_757061.1 KEGG: mag:amb3000 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein YP_757062.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psb:Psyr_2295 ABC transporter, transmembrane region:ABC transporter YP_757063.1 KEGG: cps:CPS_1657 hypothetical protein YP_757064.1 KEGG: syd:Syncc9605_0173 hypothetical protein YP_757065.1 PFAM: cytochrome c, class I; KEGG: ccr:CC1210 cytochrome c family protein YP_757066.1 KEGG: rpb:RPB_4107 hypothetical protein YP_757067.1 PFAM: class II aldolase/adducin family protein; KEGG: ccr:CC1201 class II aldolase/adducin domain protein YP_757068.1 PFAM: protein of unknown function DUF323; KEGG: bbr:BB1966 hypothetical protein YP_757069.1 KEGG: ccr:CC2637 hypothetical protein YP_757070.1 KEGG: ccr:CC1221 probable inorganic polyphosphate/ATP-NAD kinase YP_757071.1 PFAM: response regulator receiver; KEGG: mag:amb0493 CheY-like receiver YP_757072.1 KEGG: ccr:CC1220 hypothetical protein YP_757073.1 KEGG: ccr:CC2323 hypothetical protein YP_757074.1 KEGG: rpb:RPB_2186 hypothetical protein YP_757076.1 PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rba:RB9586 probable oxidoreductase YP_757077.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_2531 transcriptional regulator, LysR family YP_757078.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rba:RB9584 ripening-induced protein-putative Zn-containing oxidoreductase YP_757079.1 PFAM: protein of unknown function DUF159; KEGG: rpd:RPD_0010 protein of unknown function DUF159 YP_757080.1 PFAM: peptidase M48, Ste24p; KEGG: ccr:CC0877 hypothetical protein YP_757081.1 PFAM: AsmA family protein; KEGG: mag:amb3407 uncharacterized protein involved in outer membrane biogenesis YP_757082.1 PFAM: beta and gamma crystallin; KEGG: rfr:Rfer_1384 17 kDa surface antigen YP_757083.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin YP_757084.1 PFAM: response regulator receiver; KEGG: xcb:XC_0730 histidine kinase/response regulator hybrid protein YP_757085.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation YP_757086.1 PFAM: aldehyde dehydrogenase; KEGG: cvi:CV1499 succinylglutamate 5-semialdehyde dehydrogenase YP_757087.1 PFAM: arginine N-succinyltransferase beta subunit; KEGG: ccr:CC1606 arginine N-succinyltransferase YP_757088.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: ccr:CC1605 hypothetical protein YP_757089.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: atc:AGR_L_2052 methionine gamma-lyase YP_757090.1 PFAM: porin, opacity type; OmpA/MotB domain protein; KEGG: ccr:CC3494 OmpA family protein YP_757091.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: hch:HCH_04383 hypothetical protein YP_757092.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: vfi:VFA0260 glutathione-regulated potassium-efflux system protein KefC YP_757093.1 PFAM: Carboxylesterase, type B; KEGG: dge:Dgeo_2074 carboxylesterase, type B YP_757094.1 KEGG: ccr:CC1589 hypothetical protein YP_757095.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bte:BTH_I1427 acetyltransferase, GNAT family YP_757096.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_757097.1 PFAM: Queuosine biosynthesis protein; KEGG: mlo:mll0724 S-adenosylmethionine tRNA ribosyltransferase YP_757098.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ccr:CC1585 hypothetical protein YP_757099.1 TIGRFAM: uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: sil:SPO1255 alkylhydroperoxidase AhpD family core domain protein YP_757100.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: nar:Saro_0966 peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_757101.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: ccr:CC1582 peptidyl-prolyl cis-trans isomerase, cyclophilin-type YP_757102.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_757103.1 TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; KEGG: bmb:BruAb1_1103 GyrA, DNA gyrase, A subunit YP_757104.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: ccr:CC3219 sensor histidine kinase/response regulator YP_757105.1 PFAM: transcriptional regulator domain protein; KEGG: aba:Acid345_3544 transcriptional regulator, CadC YP_757106.1 PFAM: beta-lactamase; KEGG: xcv:XCV2113 beta-lactamase precursor YP_757107.1 PFAM: Calcium-binding EF-hand-containing protein YP_757108.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: sru:SRU_2522 RB13-6 antigen YP_757109.1 KEGG: ccr:CC2898 hypothetical protein YP_757110.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: ret:RHE_PF00134 putative nucleoside-diphosphate-sugar epimerase protein YP_757111.1 PFAM: Ankyrin; peptidase M56, BlaR1; KEGG: sdn:Sden_0579 peptidase M56, BlaR1 YP_757112.1 PFAM: Penicillinase repressor; KEGG: sdn:Sden_0578 penicillinase repressor YP_757114.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: ccr:CC1468 single-strand binding protein YP_757115.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_757116.1 PFAM: Abortive infection protein; KEGG: ccr:CC2538 membrane protein, putative YP_757117.1 KEGG: ccr:CC2593 hypothetical protein YP_757118.1 KEGG: ccr:CC2596 hypothetical protein YP_757119.1 KEGG: sdn:Sden_2421 TonB-like protein YP_757120.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: sde:Sde_2614 TonB-like periplasmic protein YP_757122.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine YP_757123.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rfr:Rfer_2437 short-chain dehydrogenase/reductase SDR YP_757124.1 KEGG: ccr:CC1987 hypothetical protein YP_757125.1 PFAM: manganese and iron superoxide dismutase; KEGG: syn:slr1516 superoxide dismutase YP_757126.1 PFAM: beta-lactamase; KEGG: sco:SCO6656 hypothetical protein YP_757127.1 KEGG: pub:SAR11_0982 hypothetical protein YP_757128.1 TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: sil:SPO2320 protein-export membrane protein SecF YP_757129.1 TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: bja:bll4735 protein-export membrane protein YP_757130.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: mag:amb2515 preprotein translocase subunit YajC YP_757131.1 PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: mag:amb2518 membrane protein related to metalloendopeptidase YP_757133.1 KEGG: mag:amb2519 protein-L-isoaspartate carboxylmethyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_757134.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_757135.1 TIGRFAM: putative outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; KEGG: sde:Sde_1294 polyhydroxyalkanoate synthesis repressor PhaR YP_757136.1 KEGG: bmb:BruAb1_0897 SerS, seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); seryl-tRNA synthetase, class IIa YP_757137.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: mlo:mll1082 probable sec-independent protein translocase component YP_757138.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; KEGG: ccr:CC2002 putative sec-independent protein translocase YP_757139.1 PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: gox:GOX1241 sec-independent protein translocase protein TatA YP_757140.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: nwi:Nwi_1803 chromosome segregation and condensation protein ScpB YP_757141.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: ccr:CC2005 putative segregation and condensation protein A YP_757142.1 PFAM: glycoside hydrolase, family 3 domain protein; KEGG: ccr:CC2006 glycosyl hydrolase, family 3 YP_757143.1 PFAM: Sporulation domain protein; KEGG: mag:amb2528 periplasmic protein TonB, links inner and outer membranes YP_757144.1 KEGG: rru:Rru_A1780 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: putative deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region YP_757145.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rpc:RPC_2506 HesB/YadR/YfhF YP_757146.1 PFAM: protein of unknown function DUF1428; KEGG: lpp:lpp2085 hypothetical protein YP_757147.1 PFAM: nitroreductase; KEGG: reu:Reut_B3607 nitroreductase YP_757148.1 PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: nmu:Nmul_A2381 peptidase M1, membrane alanine aminopeptidase YP_757150.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: atc:AGR_C_3151 exodeoxyribonuclease III YP_757152.1 KEGG: hch:HCH_01598 hypothetical protein YP_757154.1 KEGG: hch:HCH_01598 hypothetical protein YP_757155.1 TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: rsp:RSP_3716 selenophosphate synthetase YP_757156.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA YP_757157.1 KEGG: eli:ELI_04735 hypothetical protein YP_757158.1 TIGRFAM: valyl-tRNA synthetase; KEGG: ccr:CC1320 valyl-tRNA synthetase YP_757159.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: ccr:CC1078 cell cycle histidine kinase CckA YP_757160.1 TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: bja:bll5809 flagellar biosynthetic protein YP_757161.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: nha:Nham_1396 flagellar biosynthetic protein FliR YP_757162.1 FliQ, with proteins FliP and FliR, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum YP_757163.1 PFAM: protein of unknown function DUF885; KEGG: ilo:IL2415 hypothetical protein YP_757164.1 PFAM: protein of unknown function DUF885; KEGG: ilo:IL2415 hypothetical protein YP_757165.1 PFAM: protein of unknown function DUF885; KEGG: ilo:IL2415 hypothetical protein YP_757166.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagella YP_757167.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_757168.1 TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: rpb:RPB_3777 flagellar basal-body rod protein FlgB YP_757169.1 KEGG: ccr:CC0952 fliO protein YP_757170.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_757171.1 KEGG: ccr:CC2058 hypothetical protein YP_757172.1 KEGG: mag:amb3500 FlaA locus 229 kDa protein YP_757173.1 KEGG: ccr:CC2060 hypothetical protein YP_757174.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum YP_757175.1 PFAM: flagellar basal body-associated protein FliL; KEGG: mag:amb3497 flagellar basal body-associated protein YP_757176.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: ccr:CC2063 flagellar basal-body rod protein FlgF YP_757177.1 makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella YP_757178.1 required for the assembly of the flagellar basal body P-ring; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum YP_757179.1 PFAM: flagellar L-ring protein; KEGG: rpc:RPC_1504 flagellar L-ring protein YP_757180.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: ccr:CC2580 dnaK suppressor protein YP_757181.1 regulator of the sigma 54 transcriptional activator FlbD; represses FlbD when the class II flagellar structure is absent and activates FlbD when the structure is present YP_757182.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_757183.1 KEGG: rru:Rru_A2850 hypothetical protein YP_757184.1 KEGG: ccr:CC2584 flagellar basal-body protein FlbY YP_757185.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: aor:AO090012000571 predicted protein YP_757186.1 KEGG: ccr:CC1465 regulatory protein FlaEY YP_757187.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mag:amb0716 predicted nucleoside-diphosphate sugar epimerase YP_757188.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ccr:CC0234 flagellin modification protein FlmB YP_757189.1 PFAM: flagellin domain protein; KEGG: ccr:CC1460 flagellin FljL YP_757191.1 PFAM: flagellin domain protein; KEGG: ccr:CC0792 flagellin FljM YP_757192.1 PFAM: flagellin domain protein; KEGG: ccr:CC0792 flagellin FljM YP_757193.1 acts as an activator of flagellin translation and may be required for filament secretion or assembly; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum YP_757194.1 post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA: Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella YP_757195.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ccr:CC1457 flagellin modification protein FlmG YP_757196.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: mag:amb0718 spore coat polysaccharide biosynthesis protein F YP_757197.1 KEGG: ccr:CC2854 flagellin modification protein FlmD YP_757198.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ccr:CC1456 flagellin modification protein FlmH YP_757199.1 PFAM: N-acetylneuraminic acid synthase, N-terminal domain; KEGG: nwi:Nwi_0647 antifreeze-like protein YP_757200.1 KEGG: pfo:Pfl_1522 GCN5-related N-acetyltransferase YP_757201.1 KEGG: gvi:glr0465 unknown protein YP_757202.1 PFAM: protein of unknown function DUF201; KEGG: sme:SMb21227 hypothetical protein YP_757203.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: bsu:BG10614 spore coat polysaccharide biosynthesis protein spsF YP_757204.1 PFAM: N-acetylneuraminic acid synthase, N-terminal domain; KEGG: tcx:Tcr_1458 N-acylneuraminate-9-phosphate synthase YP_757205.1 PFAM: Excinuclease ABC, C subunit domain protein; KEGG: ccr:CC3518 hypothetical protein YP_757207.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: ccr:CC1455 hypothetical protein YP_757208.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: son:SO1763 streptogramin A acetyl transferase YP_757209.1 KEGG: ade:Adeh_2620 parallel beta-helix repeat protein YP_757210.1 KEGG: ade:Adeh_2621 hypothetical protein YP_757211.1 PFAM: regulatory protein, TetR; KEGG: sil:SPOA0023 transcriptional regulator, TetR family YP_757212.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: aci:ACIAD1534 putative TonB-dependent receptor protein (outer membrane salicin receptor) YP_757213.1 KEGG: ccr:CC2074 hypothetical protein YP_757214.1 KEGG: sbo:SBO_2457 hypothetical protein YP_757215.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: ccr:CC1124 glutathione S-transferase family protein YP_757216.1 PFAM: Chorismate mutase; KEGG: ccr:CC1116 chorismate mutase, putative YP_757217.1 PFAM: Hpt domain protein; KEGG: ccr:CC1114 hypothetical protein YP_757219.1 KEGG: noc:Noc_0277 possible streptogramin lyase, gluconolactonase family YP_757220.1 PFAM: protein of unknown function DUF900, hydrolase family protein; KEGG: bhe:BH07710 hypothetical protein YP_757221.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rru:Rru_A0718 chemotaxis sensory transducer YP_757222.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: vvy:VVA0278 outer membrane receptor protein YP_757224.1 PFAM: Paraquat-inducible protein A; KEGG: rme:Rmet_4089 hypothetical protein YP_757225.1 PFAM: regulatory protein, MarR; KEGG: ccr:CC2188 transcriptional regulator, MarR family YP_757226.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bte:BTH_II1389 fumarylacetoacetate hydrolase family protein YP_757227.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; KEGG: bja:bll0109 maleylacetoacetate isomerase YP_757228.1 KEGG: ccr:CC0714 membrane protein, putative YP_757230.1 KEGG: ccr:CC1485 hypothetical protein YP_757231.1 KEGG: ccr:CC2321 hypothetical protein YP_757232.1 PFAM: Mammalian cell entry related domain protein; KEGG: ccr:CC2320 putative ABC transport system substrate-bindin protein YP_757233.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nar:Saro_2844 ABC transporter related YP_757234.1 PFAM: protein of unknown function DUF140; KEGG: ccr:CC2318 putative ABC transport system permease protein YP_757235.1 PFAM: major facilitator superfamily MFS_1; KEGG: ccr:CC1481 membrane protein, putative YP_757236.1 PFAM: glycosyl transferase, group 1; KEGG: sde:Sde_0485 putative glycosyl transferase YP_757237.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sde:Sde_0484 putative methyltransferase YP_757238.1 KEGG: sde:Sde_0483 hypothetical protein YP_757239.1 KEGG: tfu:Tfu_0569 hypothetical protein YP_757241.1 KEGG: ccr:CC1227 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold YP_757242.1 PFAM: sodium:neurotransmitter symporter; KEGG: mca:MCA2621 sodium-dependent transporter family protein YP_757243.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: mag:amb3517 bacterial cell division membrane protein YP_757244.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: rsp:RSP_2326 cell division protein FtsI YP_757245.1 KEGG: mag:amb3515 hypothetical protein YP_757246.1 TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: ccr:CC1544 rod shape-determining protein MreC YP_757247.1 functions in MreBCD complex in some organisms YP_757248.1 KEGG: ccr:CC1538 hypothetical protein YP_757250.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_757251.1 KEGG: ccr:CC2098 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_757252.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: bja:bll6506 serine protease DO-like precursor YP_757253.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: rpb:RPB_2039 HflC protein YP_757254.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: nha:Nham_2728 HflK protein YP_757255.1 PFAM: dihydrofolate reductase region; KEGG: ccr:CC2126 dihydrofolate reductase YP_757256.1 KEGG: sme:SMc01191 hypothetical/unknown protein YP_757257.1 PFAM: thymidylate synthase; KEGG: dar:Daro_0593 thymidylate synthase YP_757258.1 PFAM: LytTr DNA-binding region; KEGG: rru:Rru_A2128 transcriptional regulator, LytR/AlgR family YP_757259.1 PFAM: MltA-interacting MipA family protein; KEGG: atc:AGR_C_1796 putative outer membrane protein YP_757260.1 PFAM: DoxX family protein; KEGG: rme:Rmet_4682 DoxX YP_757261.1 KEGG: bxe:Bxe_B0585 hypothetical protein YP_757262.1 PFAM: protein of unknown function DUF692; KEGG: rme:Rmet_4684 protein of unknown function DUF692 YP_757263.1 KEGG: sil:SPO1281 hypothetical protein YP_757264.1 PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: nha:Nham_4408 sigma-24 (FecI-like) YP_757265.1 PFAM: protein of unknown function DUF1109; KEGG: bja:blr4929 hypothetical protein YP_757266.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nar:Saro_0439 glyoxalase/bleomycin resistance protein/dioxygenase YP_757267.1 PFAM: thymidine kinase; KEGG: sil:SPO0914 thymidine kinase YP_757268.1 KEGG: sru:SRU_2540 hypothetical protein YP_757269.1 KEGG: rru:Rru_A1712 chemotaxis sensory transducer; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_757270.1 KEGG: nmu:Nmul_A0890 hypothetical protein YP_757271.1 PFAM: protein of unknown function DUF1321; KEGG: ccr:CC2102 hypothetical protein YP_757272.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: ccr:CC2103 hypothetical protein YP_757273.1 PFAM: major facilitator superfamily MFS_1; KEGG: rsp:RSP_3245 possible transporter, major facilitator superfamily (MFS) YP_757274.1 KEGG: rpa:RPA3872 hypothetical protein YP_757275.1 PFAM: endodeoxyribonuclease RusA; KEGG: ccr:CC2107 hypothetical protein YP_757276.1 TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; KEGG: sme:SMc00149 probable fumarate hydratase class II protein YP_757279.1 KEGG: sil:SPO1129 hypothetical protein YP_757280.1 KEGG: jan:Jann_2395 uncharacterized arylsulfate sulfotransferase-like protein YP_757281.1 KEGG: sme:SMc03240 conserved hypothetical signal peptide protein YP_757282.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: jan:Jann_3408 hypothetical protein YP_757283.1 PFAM: regulatory protein, ArsR; KEGG: jan:Jann_3407 transcriptional regulator, ArsR family YP_757284.1 PFAM: Cl- channel, voltage-gated family protein; KEGG: jan:Jann_2746 Cl-channel, voltage gated YP_757285.1 KEGG: bja:bll2563 hypothetical protein YP_757287.1 PFAM: Excinuclease ABC, C subunit domain protein; KEGG: rpa:RPA3518 excinuclease ABC, C subunit, N-terminal YP_757289.1 PFAM: UvrD/REP helicase; KEGG: ccr:CC1528 DNA helicase II YP_757290.1 PFAM: methyltransferase small; ribosomal L11 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: jan:Jann_0961 ribosomal L11 methyltransferase YP_757291.1 PFAM: beta-lactamase; KEGG: aba:Acid345_0999 beta-lactamase YP_757292.1 PFAM: LytTr DNA-binding region; KEGG: ccr:CC0551 hypothetical protein YP_757293.1 PFAM: peptidase M24; KEGG: ccr:CC1525 metallopeptidase M24 family protein YP_757295.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: tbd:Tbd_1268 multi-sensor hybrid histidine kinase YP_757296.1 KEGG: nha:Nham_1290 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; NAD-dependent DNA ligase; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold YP_757297.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: ccr:CC1983 DNA repair protein RecN YP_757298.1 KEGG: ccr:CC1984 competence lipoprotein ComL, putative YP_757299.2 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_757300.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase; Tubulin/FtsZ domain protein; KEGG: jan:Jann_2750 cell division protein FtsZ YP_757302.1 PFAM: cell division protein FtsA; KEGG: mag:amb3853 actin-like ATPase involved in cell division YP_757303.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: rru:Rru_A0946 cell division protein FtsQ YP_757304.1 KEGG: ccr:CC2543 D-alanine--D-alanine ligase B; TIGRFAM: D-alanine--D-alanine ligase; PFAM: protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein YP_757306.1 KEGG: rru:Rru_A0948 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein YP_757307.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_757308.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_757309.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: ccr:CC2552 cell division protein DivB YP_757310.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_757311.1 KEGG: mag:amb3845 UDP-N-acetylmuramyl pentapeptide phosphotransferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: glycosyl transferase, family 4 YP_757312.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: rpb:RPB_1990 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase YP_757313.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetases; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: rru:Rru_A0955 UDP-N-acetylmuramyl-tripeptide synthetase YP_757314.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: mag:amb3842 cell division protein FtsI/penicillin-binding protein 2 YP_757315.1 KEGG: mag:amb3841 periplasmic protein TonB YP_757316.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: mag:amb3840 S-adenosyl-methyltransferase MraW YP_757317.1 PFAM: protein of unknown function UPF0040; KEGG: rpr:RP570 MraZ protein YP_757318.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: nar:Saro_3051 negative regulator of AmpC, AmpD YP_757319.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: ccr:CC2568 integral membrane protein YP_757320.1 KEGG: rba:RB4014 probable acetyl xylan esterase YP_757322.1 PFAM: heat shock protein DnaJ domain protein; KEGG: ccr:CC2134 DnaJ-related protein YP_757323.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: ccr:CC2369 hydantoinase/oxoprolinase YP_757324.1 PFAM: YcfA family protein; KEGG: bte:BTH_II1999 hypothetical protein YP_757325.1 PFAM: protein of unknown function UPF0150; KEGG: rsp:RSP_2748 possible transcriptional regulator, CopG family YP_757326.1 PFAM: beta-Ig-H3/fasciclin; KEGG: cya:CYA_0079 fasciclin domain protein YP_757327.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: cbu:CBU_1603 hypothetical protein YP_757328.1 TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: eli:ELI_07390 ribosomal protein S6 modification protein YP_757329.1 PFAM: protein of unknown function DUF785; KEGG: vch:VC2280 hypothetical protein YP_757331.1 PFAM: regulatory protein, ArsR; transcriptional regulator TrmB; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: sme:SMc01842 putative methyltransferase transcription regulator protein YP_757332.1 PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: vch:VC0786 D-amino acid dehydrogenase, small subunit YP_757333.1 PFAM: Abortive infection protein; KEGG: rba:RB7634 probable sodium extrusion protein NatB YP_757334.1 PFAM: regulatory protein, LuxR; KEGG: pfl:PFL_0965 transcriptional regulator, LuxR family YP_757335.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_757336.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: ccr:CC2154 dipeptidyl peptidase IV YP_757337.1 PFAM: protein of unknown function DUF45; KEGG: bur:Bcep18194_A6032 protein of unknown function DUF45 YP_757338.1 PFAM: regulatory protein, TetR; KEGG: bld:BLi01979 hypothetical protein YP_757340.1 PFAM: OmpA/MotB domain protein; KEGG: hch:HCH_01122 outer membrane protein and related peptidoglycan-associated (LipO)protein YP_757341.1 KEGG: ccr:CC2279 GAF domain-containing protein YP_757342.1 PFAM: protein of unknown function DUF114; KEGG: pab:PAB2437 hypothetical protein YP_757343.1 PFAM: S1/P1 nuclease; KEGG: hch:HCH_03919 probable endonuclease YP_757344.1 PFAM: regulatory protein, TetR; KEGG: ssp:SSP0447 putative transcriptional regulator YP_757345.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sru:SRU_0084 putative transport/efflux transmembrane protein YP_757346.1 PFAM: acriflavin resistance protein; KEGG: sil:SPO0921 transporter, AcrB/AcrD/AcrF family YP_757347.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: pub:SAR11_0280 L-lactate dehydrogenase YP_757348.1 thiamine-pyrophosphate requiring enzyme YP_757349.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator YP_757350.1 PFAM: response regulator receiver; KEGG: mlo:mlr6690 two-component response regulator YP_757351.1 KEGG: sil:SPO2999 hypothetical protein YP_757352.1 PFAM: protein of unknown function DUF541; KEGG: rpc:RPC_0217 protein of unknown function DUF541 YP_757353.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_757355.1 PFAM: peptidase M23B; KEGG: ccr:CC2297 peptidase, M23/M37 family YP_757356.1 KEGG: eli:ELI_02215 hypothetical protein YP_757357.1 KEGG: mag:amb1110 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_757358.1 PFAM: protein of unknown function UPF0047; KEGG: ret:RHE_CH02938 hypothetical protein YP_757359.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria YP_757360.1 synthesizes RNA primers at the replication forks YP_757361.1 PFAM: GatB/Yqey domain protein; KEGG: bms:BR1482 hypothetical protein YP_757362.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase, small chain; KEGG: bmb:BruAb1_1478 CarA, carbamoyl-phosphate synthase, small subunit YP_757363.1 PFAM: extracellular solute-binding protein, family 5; KEGG: sme:SMb21196 putative oligopeptide uptake ABC transporter periplasmic solute-binding protein precursor YP_757364.1 KEGG: pol:Bpro_3938 hypothetical protein YP_757365.1 PFAM: helix-turn-helix domain protein; KEGG: rpb:RPB_4482 transcriptional regulator, XRE family YP_757366.1 KEGG: pae:PA2784 hypothetical protein YP_757367.1 PFAM: beta-lactamase; KEGG: sth:STH2021 D-alanyl-D-alanine carboxypeptidase YP_757368.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_757369.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_757370.1 PFAM: Saccharopine dehydrogenase; KEGG: nwi:Nwi_1410 saccharopine dehydrogenase YP_757371.1 PFAM: peptidase M23B; peptidase M56, BlaR1; KEGG: ade:Adeh_1347 peptidase M23B YP_757372.1 PFAM: Penicillinase repressor; KEGG: sdn:Sden_0677 penicillinase repressor YP_757373.1 PFAM: protein of unknown function DUF1022; KEGG: ccr:CC2849 hypothetical protein YP_757374.1 KEGG: xcb:XC_3893 hypothetical protein YP_757375.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: ccr:CC2871 thioredoxin reductase YP_757376.1 KEGG: eli:ELI_09450 hypothetical protein YP_757377.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpc:RPC_3839 transcriptional regulator, LysR family YP_757378.1 PFAM: Ferritin, Dps family protein; KEGG: lic:LIC10606 DNA-binding stress protein YP_757379.1 PFAM: aminotransferase, class I and II; KEGG: ccr:CC1534 aspartate aminotransferase YP_757380.1 PFAM: von Willebrand factor, type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa; KEGG: ret:RHE_CH03000 hypothetical protein YP_757381.1 TIGRFAM: sortase family protein; PFAM: peptidase C60, sortase A and B; KEGG: ret:RHE_CH03001 hypothetical protein YP_757382.1 KEGG: syn:slr1753 hypothetical protein YP_757383.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cyb:CYB_0540 putative low specificity L-threonine aldolase YP_757386.1 PFAM: response regulator receiver; KEGG: ccr:CC3155 chemotaxis protein CheYIII YP_757387.1 KEGG: bja:bll7889 hypothetical protein YP_757388.1 PFAM: response regulator receiver; KEGG: mag:amb3235 FOG: CheY-like receiver YP_757389.1 PFAM: response regulator receiver; KEGG: ccr:CC2249 chemotaxis protein CheYIII YP_757390.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_757391.1 KEGG: nha:Nham_2512 hypothetical protein YP_757392.1 KEGG: nha:Nham_2514 hypothetical protein YP_757393.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: ecs:ECs1953 putative site-specific DNA-methyltransferase YP_757396.1 KEGG: eli:ELI_01055 ParA-like protein YP_757397.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pae:PA2650 hypothetical protein YP_757399.1 PFAM: peptidase S16, lon domain protein; KEGG: rpb:RPB_0295 peptidase S16, lon-like YP_757400.1 KEGG: nwi:Nwi_2989 hypothetical protein YP_757402.1 PFAM: Curlin associated repeat protein; KEGG: ret:RHE_PE00164 hypothetical protein YP_757404.1 KEGG: cvi:CV0472 probable two-component response regulator YP_757405.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: bja:bll4398 glutathione S-transferase like protein YP_757406.1 PFAM: cell wall hydrolase, SleB; KEGG: ccr:CC2967 hypothetical protein YP_757407.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_757408.1 KEGG: rpc:RPC_4348 glycine--tRNA ligase YP_757409.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: nar:Saro_1825 glutathione-dependent formaldehyde-activating, GFA YP_757411.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_757412.1 PFAM: methyltransferase small; KEGG: ccr:CC2114 hypothetical protein YP_757413.1 KEGG: ret:RHE_CH00876 hypothetical protein YP_757414.1 PFAM: Polyprenyl synthetase; KEGG: mag:amb2162 geranylgeranyl pyrophosphate synthase YP_757415.1 PFAM: glycosyl transferase, family 4; KEGG: tbd:Tbd_1872 putative undecaprenyl phosphate N-acetylglucosaminyltransferase YP_757416.1 KEGG: sil:SPO0318 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein YP_757417.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpa:RPA1038 TPR repeat YP_757418.1 PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: ret:RHE_CH01308 electrotransfer ubiquinone oxidoreductase protein YP_757419.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: rpc:RPC_4359 phage SPO1 DNA polymerase-related protein YP_757420.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bja:blr2519 hypothetical protein YP_757421.1 KEGG: bja:bll0596 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_757422.1 PFAM: ribonuclease HII/HIII; KEGG: cvi:CV2210 ribonuclease HII YP_757423.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: sil:SPO3451 modification methylase YP_757424.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: ccr:CC2521 sensor histidine kinase/response regulator YP_757425.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: sme:SMc00452 probable A/G-specific adenine glycosylase protein YP_757426.1 KEGG: ccr:CC0376 hypothetical protein YP_757427.1 KEGG: ccr:CC0375 hypothetical protein YP_757428.1 KEGG: ccr:CC0375 hypothetical protein YP_757429.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: ccr:CC0373 smc protein YP_757430.1 KEGG: bms:BR0381 ATP sythase protein I, putative YP_757431.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_757432.1 PFAM: H+-transporting two-sector ATPase, C subunit; KEGG: sme:SMc00870 probable ATP synthase subunit C transmembrane protein YP_757433.1 PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: atc:AGR_C_1299 ATP synthase subunit B' YP_757434.1 PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: sme:SMc00868 probable ATP synthase B chain transmembrane protein YP_757435.1 KEGG: sil:SPO1055 hypothetical protein YP_757436.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: sme:SMb20626 putative transcriptional regulator, AraC family protein YP_757438.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_757439.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_757440.1 TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: rpb:RPB_3739 glycine cleavage system H protein YP_757441.1 TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: pfo:Pfl_4394 glycine cleavage system T protein YP_757442.1 KEGG: cjk:jk0195 hypothetical protein YP_757443.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_757444.1 KEGG: mag:amb0765 hypothetical protein YP_757445.1 KEGG: sil:SPO3207 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein YP_757446.1 KEGG: jan:Jann_3639 hypothetical protein YP_757447.1 PFAM: ribonuclease H; KEGG: bja:blr1316 ribonuclease H YP_757448.1 KEGG: cvi:CV1621 probable sensor/response regulatory hybrid protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_757449.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: noc:Noc_0610 TonB-like protein YP_757450.1 PFAM: protein of unknown function DUF107; KEGG: ccr:CC3374 hypothetical protein YP_757451.1 PFAM: band 7 protein; KEGG: ccr:CC3375 band 7/Mec-2 family protein YP_757452.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: ccr:CC3394 AhpC/TSA family protein YP_757453.1 PFAM: protein of unknown function DUF179; KEGG: ccr:CC3395 putative transcriptional regulator YP_757454.1 PFAM: thioesterase superfamily protein; KEGG: rpd:RPD_1750 thioesterase superfamily YP_757455.1 PFAM: EAL domain protein; KEGG: ccr:CC3396 GGDEF family protein YP_757456.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bme:BMEI1452 ribosomal-protein-alanine acetyltransferase YP_757457.1 KEGG: jan:Jann_3150 SURF1 family protein YP_757458.1 PFAM: protein of unknown function DUF983; KEGG: mlo:mlr7498 hypothetical protein YP_757459.1 PFAM: cytochrome c oxidase, subunit III; KEGG: ccr:CC3402 cytochrome c oxidase, subunit III YP_757460.1 PFAM: cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: eli:ELI_02745 putative cytochrome c oxidase assembly transmembrane protein YP_757462.1 TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; KEGG: ccr:CC3405 protoheme IX farnesyl transferase YP_757463.1 PFAM: cytochrome c oxidase, subunit I; KEGG: ccr:CC3406 cytochrome c oxidase, subunit I YP_757464.1 PFAM: cytochrome c oxidase, subunit II; cytochrome C oxidase subunit II, transmembrane region; KEGG: rpa:RPA0831 cytochrome c oxidase subunit II YP_757465.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ccr:CC2031 TPR domain protein YP_757466.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: ccr:CC3411 TldD protein YP_757467.1 KEGG: ccr:CC0224 hypothetical protein YP_757468.1 KEGG: eli:ELI_00245 hypothetical protein YP_757469.1 TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region; KEGG: ccr:CC3413 peptide transporter YP_757470.1 TIGRFAM: glutamate--cysteine ligase; PFAM: glutamate--cysteine ligase, GCS2; KEGG: xcb:XC_0768 glutamate-cysteine ligase precursor YP_757471.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_757472.1 TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: nwi:Nwi_2562 4-hydroxybenzoate polyprenyl transferase YP_757473.1 PFAM: peptidase M16 domain protein; KEGG: fra:Francci3_3796 peptidase M16-like YP_757474.1 PFAM: peptidase M16 domain protein; KEGG: aba:Acid345_4406 peptidase M16-like YP_757475.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_B4070 glyoxalase/bleomycin resistance protein/dioxygenase YP_757476.1 KEGG: bms:BR1892 hypothetical protein YP_757477.1 PFAM: regulatory protein, MarR; KEGG: ccr:CC0396 transcriptional regulator, MarR family YP_757478.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bur:Bcep18194_A6045 enoyl-CoA hydratase YP_757479.1 PFAM: beta-lactamase; KEGG: bur:Bcep18194_B0204 beta-lactamase YP_757480.1 KEGG: rpb:RPB_0517 BLUF YP_757481.1 TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: ccr:CC0313 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_757482.1 PFAM: conserved hypothetical protein 730; KEGG: mca:MCA2182 decarboxylase family protein YP_757483.1 KEGG: aba:Acid345_2449 hypothetical protein YP_757484.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ilo:IL2539 threonine aldolase putative YP_757485.1 PFAM: arsenate reductase and related; KEGG: csa:Csal_0559 hypothetical protein YP_757486.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_757487.1 KEGG: eli:ELI_00505 hypothetical protein YP_757488.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; GAF domain protein; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: ccr:CC0849 phosphotransferase system, enzyme I YP_757489.1 KEGG: ccr:CC0843 aspartokinase; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein YP_757490.1 KEGG: mlo:mlr3442 3-demethylubiquinone-9 3-methyltransferase; TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12 YP_757491.1 PFAM: protein of unknown function DUF1178; KEGG: ccr:CC0827 hypothetical protein YP_757492.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rpa:RPA0599 possible nitrilase YP_757493.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: ccr:CC0829 glutaredoxin 3 YP_757494.1 PFAM: phosphoribosyltransferase; KEGG: ccr:CC0830 competence protein F YP_757495.1 PFAM: Methyltransferase type 11; KEGG: ccr:CC0831 hypothetical protein YP_757496.1 TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: rsp:RSP_1166 NTP pyrophosphohydrolase YP_757497.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: ccr:CC3067 peptidyl-prolyl cis-trans isomerase family protein YP_757498.1 TIGRFAM: preprotein translocase, SecA subunit; PFAM: SEC-C motif domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: sme:SMc04458 probable preprotein translocase SECA subunit YP_757499.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAP1p64 putative acetyltransferase YP_757500.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_757501.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: rru:Rru_A3738 phage integrase YP_757502.1 KEGG: ccr:CC3007 hypothetical protein YP_757503.1 PFAM: shikimate kinase; KEGG: ccr:CC3008 shikimate kinase YP_757504.1 PFAM: 3-dehydroquinate synthase; KEGG: ccr:CC3009 3-dehydroquinate synthase YP_757505.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: bmb:BruAb1_2002 CBS domain protein YP_757506.1 KEGG: ret:RHE_CH02575 hypothetical protein YP_757507.1 PFAM: BolA family protein; KEGG: bja:bsr0185 putative BolA protein YP_757508.1 PFAM: heat shock protein DnaJ domain protein; KEGG: ccr:CC3010 DnaJ-related protein YP_757510.1 KEGG: mag:amb3915 CobS protein; TIGRFAM: cobalt chelatase, pCobS small subunit; PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5 YP_757512.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: bte:BTH_II1959 multicopper oxidase YP_757513.1 KEGG: mfa:Mfla_1079 outer membrane efflux protein YP_757514.1 PFAM: protein of unknown function DUF156; KEGG: eli:ELI_14385 hypothetical protein YP_757515.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; KEGG: eli:ELI_08430 putative transmembrane protein YP_757516.1 PFAM: flagellin domain protein; KEGG: ccr:CC0792 flagellin FljM YP_757517.1 KEGG: ccr:CC0672 cobalamin biosynthesis protein; TIGRFAM: cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase, CobT subunit; SMART: von Willebrand factor, type A YP_757518.1 KEGG: rpd:RPD_0285 hypothetical protein YP_757519.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: ccr:CC0658 hypothetical protein YP_757520.1 PFAM: ribosomal protein L28; KEGG: sil:SPO0974 ribosomal protein L28 YP_757521.1 KEGG: rpc:RPC_0544 hypothetical protein YP_757522.1 PFAM: helicase domain protein; KEGG: rpb:RPB_0548 helicase YP_757523.1 PFAM: RNA-binding S4 domain protein; KEGG: ccr:CC0656 S4 domain protein YP_757524.1 PFAM: protein of unknown function DUF1332; KEGG: sil:SPO1309 hypothetical protein YP_757525.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: ccr:CC0654 ferredoxin A YP_757526.1 PFAM: transcription factor CarD; KEGG: ccr:CC0653 CarD family transcriptional regulator YP_757527.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: ret:RHE_CH04026 RNA polymerase sigma factor protein (sigma-70) YP_757528.1 PFAM: nuclease (SNase domain protein); KEGG: rru:Rru_A0083 nuclease, SNase-like YP_757529.1 PFAM: chemotaxis sensory transducer; KEGG: rru:Rru_A3513 chemotaxis sensory transducer YP_757530.1 PFAM: DSBA oxidoreductase; KEGG: rpa:RPA1011 DsbA oxidoreductase YP_757531.1 PFAM: TPR repeat-containing protein; EAL domain protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: GGDEF domain containing protein; Tetratricopeptide domain protein; KEGG: vvu:VV20556 predicted signal transduction protein YP_757532.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: eba:ebA578 predicted subtilase YP_757533.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bma:BMA3240 alcohol dehydrogenase, zinc-containing YP_757534.1 PFAM: protein of unknown function DUF152; KEGG: mlo:mlr2681 hypothetical protein YP_757535.1 PFAM: protein of unknown function UPF0061; KEGG: eli:ELI_02875 hypothetical protein YP_757536.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: dra:DR1485 lipase, putative YP_757538.1 PFAM: protein of unknown function DUF924; KEGG: sil:SPO2224 hypothetical protein YP_757539.1 activates fatty acids by binding to coenzyme A; may be involved in acyclic terpene utilization YP_757540.1 PFAM: protein of unknown function DUF417; KEGG: cps:CPS_4907 hypothetical protein YP_757541.1 PFAM: TatD-related deoxyribonuclease; KEGG: noc:Noc_0664 TatD-related deoxyribonuclease YP_757542.1 KEGG: ecc:c4512 hypothetical protein YP_757543.1 KEGG: ecc:c4513 hypothetical protein YP_757544.1 PFAM: KAP P-loop domain protein; KEGG: ecc:c4514 hypothetical protein YP_757545.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: atc:AGR_pAT_503 hypothetical protein YP_757547.1 SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: nfa:pnf1370 putative DNA-binding protein YP_757548.1 KEGG: nfa:nfa53570 hypothetical protein YP_757549.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: tcx:Tcr_1428 heavy metal efflux pump CzcA YP_757550.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: nha:Nham_1888 secretion protein HlyD YP_757551.1 PFAM: outer membrane efflux protein; KEGG: ccr:CC2721 metal ion efflux outer membrane factor protein family YP_757552.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: pst:PSPTO_B0036 relaxase/mobilization nuclease MobA, putative YP_757553.1 PFAM: mobilisation protein; KEGG: nmu:NmulC_2791 mobilization protein YP_757555.1 PFAM: regulatory protein, MerR; KEGG: nar:Saro_2152 transcriptional regulator, MerR family YP_757556.1 PFAM: regulatory protein, MerR; KEGG: psb:Psyr_4838 regulatory protein, MerR YP_757557.1 PFAM: Mercuric transport protein MerT; KEGG: pol:Bpro_2231 mercuric transport protein MerT YP_757558.1 PFAM: Heavy metal transport/detoxification protein; KEGG: bxe:Bxe_A0239 periplasmic mercuric ion binding protein MerP YP_757559.1 TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: sep:SE0085 putative mercuric reductase YP_757560.1 cleaves the carbon-mercury bond of organomercuric compounds YP_757561.1 KEGG: tfu:Tfu_1571 hypothetical protein YP_757562.1 PFAM: cation efflux protein; KEGG: bja:bll4927 hypothetical protein YP_757563.1 PFAM: regulatory protein, MerR; KEGG: sil:SPOA0389 transcriptional regulator, MerR family YP_757564.1 TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8, signal peptidase II; KEGG: eli:ELI_04470 putative lipoprotein signal peptidase YP_757565.1 PFAM: protein of unknown function DUF302; KEGG: nha:Nham_1910 protein of unknown function DUF302 YP_757566.1 PFAM: Na+/H+ antiporter NhaA; KEGG: pca:Pcar_1390 Na+/H+ antiporter YP_757567.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: cps:CPS_2867 heavy metal efflux pump, CzcA family YP_757568.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ppu:PP0044 cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family YP_757569.1 PFAM: outer membrane efflux protein; KEGG: neu:NE1640 outer membrane efflux protein YP_757570.1 PFAM: phage integrase family protein; KEGG: jan:Jann_1536 phage integrase YP_757572.1 PFAM: TRAG family protein; KEGG: atc:AGR_L_58 component of type IV secretion system YP_757574.1 PFAM: Antirestriction ArdA family protein; KEGG: neu:NE0260 putative antirestriction protein YP_757575.1 KEGG: ret:RHE_CH01967 putative site-specific recombinase, phage integrase family protein YP_757576.1 PFAM: Exopolysaccharide synthesis, ExoD; KEGG: neu:NE0797 hypothetical protein YP_757577.1 PFAM: Disulphide bond formation protein DsbB; KEGG: rsp:RSP_2929 putative disulfide bond formation protein DsbB YP_757578.1 PFAM: Ubiquinone biosynthesis protein COQ7; KEGG: ccr:CC2197 Coq7 family protein YP_757579.1 PFAM: protein of unknown function DUF1697; KEGG: bja:bll4334 hypothetical protein YP_757580.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: ccr:CC2200 HNH endonuclease family protein YP_757581.1 PFAM: phospholipase/Carboxylesterase; KEGG: rsp:RSP_2728 phospholipase/carboxylesterase YP_757582.1 PFAM: Excinuclease ABC, C subunit domain protein; KEGG: rpa:RPA3704 excinuclease ABC, C subunit, N-terminal YP_757583.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu YP_757585.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: ccr:CC0737 Rieske 2Fe-2S family protein YP_757586.1 PFAM: Hypoxia induced protein conserved region; KEGG: ccr:CC0730 hypothetical protein YP_757587.1 PFAM: beta-lactamase; KEGG: jan:Jann_1021 beta-lactamase YP_757588.1 TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: atc:AGR_L_2467 hypothetical protein YP_757589.1 PFAM: YceI family protein; KEGG: sil:SPO2279 hypothetical protein YP_757590.1 PFAM: beta-lactamase; KEGG: btk:BT9727_2997 beta-lactamase YP_757591.1 PFAM: transcriptional regulator PadR family protein; KEGG: aba:Acid345_3563 transcriptional regulator, PadR-like family YP_757593.1 PFAM: electron transfer flavoprotein beta-subunit; KEGG: ret:RHE_PF00405 electron transport flavoprotein, beta subunit YP_757594.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: rpa:RPA4749 electron transfer flavoprotein alpha-subunit, (ETFLS) YP_757595.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: aba:Acid345_0971 amidohydrolase 3 YP_757596.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: ret:RHE_CH02611 probable transcriptional regulator protein, AraC family YP_757598.1 PFAM: phytase; KEGG: ccr:CC1295 3-phytase, fusion, putative YP_757599.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_3988 TonB-dependent receptor YP_757600.1 PFAM: Redoxin domain protein; KEGG: nwi:Nwi_0716 thioredoxin-like protein YP_757601.1 TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: jan:Jann_0497 argininosuccinate lyase YP_757602.1 KEGG: rpd:RPD_0940 hypothetical protein YP_757603.1 TIGRFAM: MJ0042 family finger-like protein; KEGG: ccr:CC2215 hypothetical protein YP_757604.1 KEGG: ret:RHE_CH03802 cell-division ATP-binding protein; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase YP_757605.1 PFAM: protein of unknown function DUF214; KEGG: ccr:CC2217 hypothetical protein YP_757606.1 PFAM: protein of unknown function DUF218; KEGG: bmb:BruAb1_1970 hypothetical protein YP_757607.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: rru:Rru_A3257 phospholipid/glycerol acyltransferase YP_757608.1 KEGG: rsp:RSP_2286 hypothetical protein YP_757609.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase, class V; aminotransferase, class I and II; KEGG: mlo:mll3536 imidazole acetol phosphate aminotransferase YP_757610.1 PFAM: Methyltransferase type 11; KEGG: ccr:CC0520 hypothetical protein YP_757611.1 PFAM: beta-lactamase domain protein; KEGG: nar:Saro_1321 hydroxyacylglutathione hydrolase YP_757612.1 PFAM: protein of unknown function DUF985; KEGG: mag:amb0788 hypothetical protein YP_757613.1 KEGG: ccr:CC0512 hypothetical protein YP_757614.1 TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Acetoacetyl-CoA reductase; KEGG: rsp:RSP_0747 short-chain dehydrogenase/reductase YP_757615.1 TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: mlo:mll3846 hypothetical protein YP_757617.1 KEGG: ccr:CC0470 hypothetical protein YP_757618.1 PFAM: glycosyl transferase, family 2; KEGG: ccr:CC0469 glycosyl transferase family protein YP_757619.1 PFAM: glycosyl transferase, family 39; KEGG: ccr:CC0468 hypothetical protein YP_757620.1 PFAM: pyruvate carboxyltransferase; KEGG: ccr:CC0467 3-hydroxy-3-methylglutarate-CoA lyase YP_757621.1 PFAM: glycosyl transferase, family 2; KEGG: ccr:CC0465 glycosyl transferase family protein YP_757622.1 PFAM: O-antigen polymerase; KEGG: ccr:CC2301 hypothetical protein YP_757623.1 TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); TGS domain protein; Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase, SAD; KEGG: rru:Rru_A3487 threonyl-tRNA synthetase, class IIa YP_757624.1 PFAM: protein of unknown function DUF37; KEGG: atc:AGR_C_3208 hypothetical protein YP_757625.1 KEGG: ccr:CC0462 hypothetical protein YP_757628.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_757629.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_757630.1 KEGG: rpd:RPD_4327 hypothetical protein YP_757631.1 PFAM: peptidase U32; KEGG: rsp:RSP_0465 putative protease YP_757632.1 PFAM: peptidase U32; KEGG: rpd:RPD_4325 peptidase U32 YP_757633.1 PFAM: Chorismate mutase; KEGG: ppu:PP2170 chorismate mutase family protein YP_757634.1 PFAM: Alkaline phosphatase; KEGG: ccr:CC0455 alkaline phosphatase, putative YP_757635.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ccr:CC0454 TonB-dependent receptor YP_757636.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: ccr:CC0453 ribosomal large subunit pseudouridine synthase d YP_757637.1 PFAM: peptidase M24; KEGG: pae:PA4498 probable metallopeptidase YP_757638.1 PFAM: small multidrug resistance protein; KEGG: dge:Dgeo_2170 small multidrug resistance protein YP_757639.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: ccr:CC0259 glutathione S-transferase family protein YP_757640.1 KEGG: ccr:CC3224 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS YP_757642.1 KEGG: sme:SMc04459 probable metalloprotease transmembrane protein; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_757643.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: ccr:CC3227 hypothetical protein YP_757644.1 KEGG: rru:Rru_A1096 hypothetical protein YP_757645.1 PFAM: OmpA/MotB domain protein; KEGG: gox:GOX1688 peptidoglycan-associated lipoprotein YP_757646.1 PFAM: TolB, N-terminal domain protein; WD40 domain protein beta Propeller; KEGG: mag:amb3211 periplasmic component of the Tol biopolymer transport system YP_757647.1 KEGG: rpb:RPB_1811 putative TolA YP_757648.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: bmb:BruAb1_1684 TonB system transport protein, ExbD/TolR family YP_757649.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: mag:amb3214 biopolymer transport protein YP_757650.1 KEGG: spn:SP1862 hypothetical protein YP_757651.1 TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: ccr:CC3234 hypothetical protein YP_757652.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_757653.1 TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein, RuvA; RuvA domain protein; KEGG: sme:SMc03966 probable holliday junction DNA helicase protein YP_757654.1 TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; KEGG: ccr:CC3238 Holliday junction resolvase YP_757655.1 TIGRFAM: Twin-arginine translocation pathway signal YP_757656.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: bur:Bcep18194_A5862 hypothetical protein YP_757657.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: tcr:507927.20 mitochondrial oligo_U binding protein TBRGG1 Pfam: Mucin PROSITE: GLY_RICH YP_757658.1 PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein; KEGG: jan:Jann_0385 cupin 4 YP_757659.1 PFAM: Strictosidine synthase; SMP-30/Gluconolaconase/LRE domain protein; KEGG: pae:PA1293 hypothetical protein YP_757660.1 TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: rpb:RPB_0949 transketolase YP_757661.1 PFAM: phosphoglucose isomerase (PGI); KEGG: fra:Francci3_0045 glucose-6-phosphate isomerase YP_757662.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: bja:bll5968 Similar to Mannose-6-phosphate isomerase YP_757663.1 PFAM: protein of unknown function DUF28; KEGG: jan:Jann_3380 protein of unknown function DUF28 YP_757664.1 PFAM: Nucleotidyl transferase; KEGG: tbd:Tbd_1239 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_757665.1 TIGRFAM: conserved hypothetical protein; PFAM: metallophosphoesterase; KEGG: ccr:CC3244 hypothetical protein YP_757666.1 KEGG: ret:RHE_CH02901 5-methyltetrahydrofolate--homocysteine S-methyltransferase protein; TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase, DHPS; Methionine synthase, B12-binding module, cap domain protein; Vitamin B12 dependent methionine synthase, activation region; cobalamin B12-binding domain protein YP_757667.1 PFAM: homocysteine S-methyltransferase; KEGG: rpc:RPC_3735 5-methyltetrahydrofolate--homocysteine methyltransferase YP_757668.1 KEGG: ccr:CC2140 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_757669.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_757670.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_757673.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: rpa:RPA4454 antifreeze protein, type I:5-formyltetrahydrofolate cyclo-ligase YP_757674.1 PFAM: protein of unknown function DUF710; KEGG: atc:AGR_L_2200 hypothetical protein YP_757677.1 PFAM: glycosyl transferase, family 2; KEGG: mag:amb1074 predicted glycosyltransferase YP_757678.1 PFAM: Citrate transporter; TrkA-C domain protein; KEGG: hch:HCH_02743 di- and tricarboxylate transporters YP_757679.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: mag:amb3708 3'-phosphoadenosine 5'-phosphosulfate 3'-phosphatase YP_757680.1 KEGG: mlo:mlr7576 sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase; TIGRFAM: small GTP-binding protein; sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; adenylylsulfate kinase; elongation factor Tu, domain 2 protein YP_757681.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_757682.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ccr:CC3611 DegT/DnrJ/EryC1/StrS family protein YP_757683.1 TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase, class-II; sugar isomerase (SIS); KEGG: rpa:RPA2660 D-fructose-6-phosphate amidotransferase YP_757684.1 KEGG: ccr:CC1016 LpsE protein YP_757685.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: ret:RHE_CH01513 dTDP-4-dehydrorhamnose reductase protein YP_757686.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: jan:Jann_3843 dTDP-glucose 4,6-dehydratase YP_757687.1 KEGG: gox:GOX1051 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related YP_757688.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pcr:Pcryo_0625 glucose-1-phosphate thymidylyltransferase YP_757689.1 KEGG: dar:Daro_2425 integrase, catalytic region YP_757690.1 PFAM: transposase IS3/IS911 family protein; KEGG: rpd:RPD_0744 integrase, catalytic region YP_757691.1 KEGG: bfs:BF3697 hypothetical protein YP_757692.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bfs:BF3696 putative haloacid dehalogenase-like hydrolase YP_757693.1 PFAM: Nucleotidyl transferase; KEGG: mag:amb0156 dTDP-glucose pyrophosphorylase YP_757694.1 KEGG: psp:PSPPH_4679 hypothetical protein YP_757698.1 KEGG: nmu:Nmul_A0925 peptidase, M50 family YP_757701.1 KEGG: rpd:RPD_0744 integrase, catalytic region YP_757702.1 KEGG: rsp:RSP_3985 hypothetical protein YP_757704.1 PFAM: glycosyl transferase, group 1; KEGG: xcb:XC_3634 glycosyltransferase YP_757705.1 PFAM: glycosyl transferase, family 2; KEGG: nha:Nham_1054 lipopolysaccharide biosynthesis protein YP_757706.1 KEGG: ava:Ava_C0050 hemolysin-type calcium-binding region YP_757707.1 KEGG: cvi:CV2105 hypothetical protein YP_757708.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll7564 ABC transporter ATP-binding protein YP_757709.1 PFAM: ABC-2 type transporter; KEGG: nfa:nfa2190 putative ABC transporter membrane protein YP_757710.1 PFAM: glycosyl transferase, group 1; KEGG: xcb:XC_3634 glycosyltransferase YP_757711.1 KEGG: rpd:RPD_0744 integrase, catalytic region YP_757712.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: rpa:RPA3321 possible phosphomannomutase AlgC YP_757713.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: ccr:CC2382 UDP-glucose 6-dehydrogenase YP_757714.1 TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: ccr:CC0117 phosphoglucomutase/phosphomannomutase family protein YP_757715.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: ccr:CC3637 UTP--glucose-1-phosphate uridylyltransferase YP_757716.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: ccr:CC2378 NAD-dependent epimerase/dehydratase family protein YP_757717.1 KEGG: cps:CPS_4328 cadherin domain protein; PFAM: Hemolysin-type calcium-binding region; peptidase M10A and M12B, matrixin and adamalysin; Cadherin; peptidase domain protein; SMART: peptidase, metallopeptidases YP_757718.1 PFAM: outer membrane efflux protein; KEGG: csa:Csal_2630 type I secretion outer membrane protein, TolC YP_757719.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: rru:Rru_B0040 type I secretion membrane fusion protein, HlyD YP_757720.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rru:Rru_B0039 type I secretion system ATPase, PrtD YP_757721.1 KEGG: ccr:CC2263 sugar isomerase, KpsF/GutQ; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS) YP_757722.1 KEGG: xoo:XOO1460 phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase YP_757723.1 KEGG: rpc:RPC_2661 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding YP_757724.1 PFAM: pentapeptide repeat protein; KEGG: ccr:CC2260 pentapeptide repeat family protein YP_757725.1 PFAM: heat shock protein Hsp20; KEGG: ccr:CC2258 heat shock protein, Hsp20 family YP_757726.1 KEGG: ilo:IL2291 predicted O-methyltransferase YP_757727.1 KEGG: ccr:CC2255 hypothetical protein YP_757728.1 TIGRFAM: histidinol-phosphate phosphatase, putative; PFAM: inositol monophosphatase; KEGG: sil:SPO2958 inositol monophosphatase family protein YP_757729.1 PFAM: helix-turn-helix domain protein; KEGG: ccr:CC2251 transcriptional regulator, Cro/CI family YP_757730.1 PFAM: N-formylglutamate amidohydrolase; KEGG: ccr:CC0743 formiminoglutamase, putative YP_757731.1 PFAM: response regulator receiver; KEGG: ret:RHE_CH03575 probable two-component response regulator protein YP_757732.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: eli:ELI_01440 TonB-dependent receptor YP_757733.1 KEGG: sil:SPO3420 hypothetical protein YP_757734.1 PFAM: protein of unknown function DUF59; KEGG: sil:SPO1803 Mrp/NBP35 family protein YP_757735.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: zmo:ZMO0230 ABC-type cobalamin/Fe3+ transport systems YP_757736.1 PFAM: transport system permease protein; KEGG: rsp:RSP_2404 ABC cobalamin/Fe3+-siderophore transporter, inner membrane subunit YP_757737.1 KEGG: ccr:CC1191 iron compound ABC transporter, periplasmic substrate-binding protein YP_757738.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: eli:ELI_10805 TonB-dependent receptor YP_757739.1 TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: rru:Rru_A3717 glycosyl transferase WecB/TagA/CpsF YP_757741.1 PFAM: FAD dependent oxidoreductase; protein of unknown function DUF752; KEGG: ccr:CC0748 conserved hypothetical protein YP_757742.1 PFAM: protein of unknown function DUF1234; KEGG: mlo:mll0076 hypothetical protein YP_757743.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_757744.1 PFAM: major facilitator superfamily MFS_1; KEGG: ccr:CC0751 multidrug resistance protein, putative YP_757745.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: mag:amb1110 signal transduction histidine kinase YP_757746.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: ppu:PP4798 membrane-bound lytic murein transglycosylase, putative YP_757747.1 PFAM: protein of unknown function DUF1194; KEGG: rpb:RPB_1215 protein of unknown function DUF1194 YP_757748.1 PFAM: protein of unknown function DUF1194; KEGG: rpb:RPB_1215 protein of unknown function DUF1194 YP_757749.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: cps:CPS_1431 alcohol dehydrogenase, iron-containing YP_757750.1 PFAM: dienelactone hydrolase; KEGG: ret:RHE_PE00366 probable dienelactone hydrolase protein YP_757751.1 PFAM: ribosomal protein L36; KEGG: eli:ELI_10925 ribosomal protein L36 YP_757752.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ccr:CC3320 hydrolase, haloacid dehalogenase-like family YP_757753.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: jan:Jann_1503 acyl-CoA dehydrogenase-like YP_757754.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: jan:Jann_1502 acyl-CoA dehydrogenase-like YP_757755.1 KEGG: dge:Dgeo_2148 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; MASE1 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_757756.1 PFAM: response regulator receiver; KEGG: mba:Mbar_A3248 response regulator receiver YP_757757.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sil:SPO1416 TPR domain protein YP_757758.1 PFAM: alpha/beta hydrolase fold; KEGG: bja:bll7545 putative esterase YP_757759.1 KEGG: rru:Rru_A1042 hypothetical protein YP_757762.1 PFAM: protein of unknown function DUF984; KEGG: bcl:ABC3755 hypothetical protein YP_757763.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: ccr:CC3315 sigma-54 dependent DNA-binding response regulator YP_757764.1 PFAM: Abortive infection protein; KEGG: nha:Nham_2280 abortive infection protein YP_757765.1 PFAM: alpha/beta hydrolase fold; KEGG: ccr:CC3308 hydrolase, putative YP_757767.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: xac:XAC3993 two-component system regulatory protein YP_757768.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: ccr:CC1149 hypothetical protein YP_757769.1 KEGG: bcz:BCZK3120 hypothetical protein YP_757770.1 PFAM: aa3 type cytochrome c oxidase subunit IV; KEGG: ccr:CC3306 hypothetical protein YP_757771.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: ccr:CC3305 NAD(P) transhydrogenase, alpha subunit YP_757772.1 KEGG: ccr:CC3304 NAD(P) transhydrogenase, alpha2 subunit YP_757773.1 PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: ccr:CC3303 NAD(P) transhydrogenase, beta subunit YP_757774.1 KEGG: mlo:mll4935 hypothetical protein YP_757775.1 KEGG: syn:slr1025 hypothetical protein YP_757776.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ccr:CC3481 hypothetical protein YP_757777.1 KEGG: sth:STH2408 HIT family protein YP_757778.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: ccr:CC2488 hypothetical protein YP_757779.1 KEGG: eli:ELI_12150 DnaK suppressor protein, putative YP_757780.1 PFAM: DinB family protein; KEGG: mlo:mlr7920 hypothetical protein YP_757781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ccr:CC3299 ABC transporter, ATP-binding protein YP_757782.1 KEGG: ccr:CC3298 conserved hypothetical protein YP_757783.1 PFAM: helix-turn-helix, HxlR type; KEGG: pae:PA0116 hypothetical protein YP_757784.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpa:RPA0021 possible short chain dehydrogenase YP_757785.1 PFAM: DSBA oxidoreductase; KEGG: rpb:RPB_0020 DsbA oxidoreductase YP_757786.1 PFAM: ribosomal protein S21; KEGG: ccr:CC3297 30S ribosomal protein S21 YP_757787.1 TIGRFAM: rpsU-divergently transcribed protein; PFAM: COQ9 domain protein; KEGG: eli:ELI_00180 hypothetical protein YP_757788.1 PFAM: Alternative oxidase; KEGG: nar:Saro_1576 alternative oxidase YP_757789.1 PFAM: metallophosphoesterase; KEGG: tfu:Tfu_2592 putative phosphatase YP_757790.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_757791.1 KEGG: gox:GOX2394 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_757792.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ccr:CC3285 GGDEF family protein YP_757793.1 KEGG: sil:SPO0894 hypothetical protein YP_757794.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: mag:amb2302 3-polyprenyl-4-hydroxybenzoate decarboxylase YP_757795.1 PFAM: protein of unknown function DUF465; KEGG: ccr:CC3291 hypothetical protein YP_757796.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bxe:Bxe_A0959 hypothetical protein YP_757797.1 PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: pol:Bpro_3536 short-chain dehydrogenase/reductase SDR YP_757798.1 PFAM: protein of unknown function DUF1013; KEGG: bmb:BruAb1_1722 hypothetical protein YP_757799.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ccr:CC3293 alcohol dehydrogenase zinc-containing YP_757801.1 PFAM: protein of unknown function DUF1465; KEGG: ccr:CC3295 hypothetical protein YP_757802.1 PFAM: helix-turn-helix domain protein YP_757803.1 PFAM: BLUF domain protein; KEGG: rpa:RPA4282 possible activator of photopigment and puc with BLUF domain YP_757804.1 PFAM: chemotaxis sensory transducer; KEGG: mag:amb2795 methyl-accepting chemotaxis protein YP_757805.1 PFAM: ribosomal protein L31; KEGG: rpa:RPA0918 possible 50S ribosomal protein L31 YP_757806.1 KEGG: eba:ebB141 potential post-segregation antitoxin similar to CcdA YP_757807.1 KEGG: eba:ebA4007 CcdB-like toxin protein YP_757808.1 PFAM: OmpA/MotB domain protein; KEGG: rpc:RPC_0800 OmpA/MotB YP_757809.1 KEGG: mag:amb1288 hypothetical protein YP_757810.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: jan:Jann_0760 (acyl-carrier protein) phosphodiesterase YP_757811.1 KEGG: mbo:Mb3266c probable conserved integral membrane protein YP_757812.1 PFAM: inositol monophosphatase; KEGG: mlo:mlr3921 putative myo-inositol-1(or 4)-monophosphatase YP_757813.1 TIGRFAM: translation elongation factor P; PFAM: Elongation factor P/YeiP protein; Elongation factor, KOW domain protein; KEGG: bmb:BruAb1_1695 Efp, translation elongation factor P YP_757814.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: nmu:Nmul_A0104 Sel1-like repeat YP_757815.1 KEGG: nar:Saro_1962 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_757816.1 KEGG: jan:Jann_1062 peptidase S1 and S6, chymotrypsin/Hap YP_757817.1 KEGG: jan:Jann_1062 peptidase S1 and S6, chymotrypsin/Hap YP_757818.1 KEGG: jan:Jann_1062 peptidase S1 and S6, chymotrypsin/Hap YP_757819.1 PFAM: fructose-bisphosphate aldolase, class-I; KEGG: bja:bll1520 fructose bisphosphate aldolase YP_757820.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_757821.1 KEGG: ccr:CC3248 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_757822.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: noc:Noc_1509 UDP-sulfoquinovose synthase YP_757823.1 PFAM: HipA domain protein; KEGG: plu:plu2423 hypothetical protein YP_757824.1 PFAM: helix-turn-helix domain protein; KEGG: plu:plu2422 hypothetical protein YP_757825.1 TIGRFAM: acetylornithine deacetylase (ArgE); PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: ccr:CC3631 acetylornithine deacetylase YP_757826.1 KEGG: mag:amb3752 Flp pilus assembly protein TadG YP_757827.1 KEGG: mlo:mlr7847 hypothetical protein YP_757828.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: aba:Acid345_4533 peptidylprolyl isomerase, FKBP-type YP_757829.1 PFAM: peptidase M16 domain protein; KEGG: ccr:CC2638 peptidase, M16 family YP_757830.1 KEGG: sil:SPO2813 peptide/nickel/opine uptake family ABC transporter, ATP-binding protein, putative; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase YP_757831.1 KEGG: mac:MA1270 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_757832.1 PFAM: protein of unknown function DUF214; KEGG: nha:Nham_0904 protein of unknown function DUF214 YP_757833.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bld:BLi01650 similar to ABC transporter (ATP-binding protein); RBL02163 YP_757834.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ade:Adeh_2972 secretion protein HlyD YP_757836.1 SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: xcb:XC_4163 transcriptional regulator AraC family YP_757838.1 TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: pae:PA0128 PhnA protein YP_757839.1 PFAM: peptidase M16 domain protein; KEGG: ilo:IL1537 peptidase, M16 family YP_757840.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ccr:CC1571 gluconate 5-dehydrogenase YP_757841.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: ccr:CC0026 sensory box histidine kinase/response regulator YP_757842.1 PFAM: homoserine dehydrogenase; homoserine dehydrogenase, NAD-binding; KEGG: cya:CYA_1100 homoserine dehydrogenase YP_757843.1 catalyzes the formation of O-acetyl -L-homoserine from L-homoserine and acetyl-CoA YP_757844.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: xcv:XCV3176 cystathionine gamma-synthase YP_757845.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: ret:RHE_PB00026 glycerol kinase protein YP_757846.1 KEGG: mlo:mlr1612 hypothetical protein YP_757847.1 PFAM: monooxygenase, FAD-binding; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bmb:BruAb1_1388 hypothetical protein YP_757848.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: vvu:VV11680 membrane-fusion protein YP_757849.1 PFAM: acriflavin resistance protein; KEGG: cps:CPS_4620 AcrB/AcrD/AcrF family protein YP_757850.1 PFAM: glucose sorbosone dehydrogenase; KEGG: rpd:RPD_3928 glucose sorbosone dehydrogenase YP_757852.1 KEGG: ccr:CC3101 hypothetical protein YP_757853.1 KEGG: ccr:CC3101 hypothetical protein YP_757854.1 KEGG: ccr:CC3565 hypothetical protein YP_757855.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ccr:CC3566 ABC transporter, ATP-binding protein YP_757856.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_3202 ABC transporter related YP_757857.1 SMART: peptidase M14, carboxypeptidase A; KEGG: ilo:IL0199 conserved secreted Zn-dependent enzyme from deacylase/carboxypeptidase superfamily YP_757858.1 PFAM: beta-lactamase domain protein; KEGG: rme:Rmet_5415 beta-lactamase-like protein YP_757859.1 PFAM: cyclic nucleotide-binding; KEGG: neu:NE1296 cyclic nucleotide-binding domain:cAMP-dependent protein kinase YP_757860.1 SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: ccr:CC1415 hypothetical protein YP_757862.1 KEGG: ccr:CC1413 hypothetical protein YP_757863.1 KEGG: rpa:RPA0492 hypothetical protein YP_757864.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate YP_757865.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: pha:PSHAa1141 6-phosphogluconolactonase YP_757866.1 KEGG: bmb:BruAb2_0454 Zwf, glucose-6-phosphate 1-dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase YP_757867.1 KEGG: atc:AGR_C_2945 anaerobic coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_757868.1 PFAM: surface antigen (D15); KEGG: ccr:CC1603 putative outer membrane protein YP_757869.1 PFAM: protein of unknown function DUF490; KEGG: ccr:CC1604 hypothetical protein YP_757870.1 PFAM: MscS Mechanosensitive ion channel; KEGG: eba:ebA645 hypothetical protein YP_757871.1 PFAM: Mg2+ transporter protein, CorA family protein; KEGG: hch:HCH_06583 Mg2+ and Co2+ transporters YP_757872.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: cps:CPS_2003 choline/carnitine/betaine transport family protein YP_757873.1 PFAM: sulfotransferase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: eli:ELI_00455 TPR domain protein YP_757874.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: eli:ELI_00460 TonB-dependent receptor YP_757875.1 PFAM: regulatory protein, MarR; KEGG: noc:Noc_1027 transcriptional regulatory protein, MarR family YP_757876.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bms:BR1084 CaiB/BaiF family protein YP_757877.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: eli:ELI_00320 fatty oxidation complex, alpha subunit YP_757878.1 PFAM: AMP-dependent synthetase and ligase; KEGG: eli:ELI_00310 long-chain-fatty-acid--CoA ligase YP_757879.1 KEGG: ccr:CC0674 hypothetical protein YP_757880.1 KEGG: eli:ELI_10140 hypothetical protein YP_757881.1 PFAM: short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: rpd:RPD_3208 short-chain dehydrogenase/reductase SDR YP_757882.1 PFAM: aminoglycoside phosphotransferase; KEGG: nar:Saro_0994 aminoglycoside phosphotransferase YP_757883.1 PFAM: regulatory protein, TetR; KEGG: ccr:CC3192 transcriptional regulator, TetR family YP_757884.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ccr:CC3194 TonB-dependent receptor YP_757885.1 PFAM: major facilitator superfamily MFS_1; KEGG: eli:ELI_00305 hypothetical protein YP_757886.1 PFAM: protein of unknown function DUF35; KEGG: rpd:RPD_3114 protein of unknown function DUF35 YP_757887.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_757888.1 KEGG: eli:ELI_00290 hypothetical protein YP_757889.1 KEGG: nar:Saro_0867 acetyl-CoA C-acyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase YP_757890.1 PFAM: acyl-CoA thioesterase; KEGG: nar:Saro_1064 palmitoyl-CoA hydrolase YP_757891.1 KEGG: eli:ELI_07235 hypothetical protein; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein YP_757892.1 KEGG: ppu:PP5095 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent YP_757893.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_757894.1 TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: cps:CPS_3463 proline/sodium symporter YP_757895.1 KEGG: sma:SAV5878 putative 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase YP_757896.1 KEGG: sde:Sde_1018 pectic acid lyase; TIGRFAM: glucokinase; PFAM: Glucokinase YP_757897.1 PFAM: short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: reu:Reut_A1263 short chain dehydrogenase YP_757898.1 KEGG: mlo:mlr8336 hypothetical protein YP_757899.1 PFAM: RDD domain containing protein; KEGG: mlo:mll8330 hypothetical protein YP_757900.1 KEGG: ccr:CC0568 hypothetical protein YP_757901.1 PFAM: protein of unknown function DUF58; SMART: von Willebrand factor, type A; KEGG: nar:Saro_0463 protein of unknown function DUF58 YP_757902.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: ccr:CC0566 MoxR protein YP_757905.1 PFAM: amidohydrolase; KEGG: cps:CPS_3085 amidohydrolase family protein YP_757906.1 PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: bja:bll3138 NADH dehydrogenase I chain E YP_757907.1 PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: reu:Reut_A0618 NADH dehydrogenase (quinone) YP_757908.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mfa:Mfla_0720 formate dehydrogenase, alpha subunit YP_757909.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase, subunit FdhD; KEGG: rpc:RPC_4562 formate dehydrogenase family accessory protein FdhD YP_757910.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: eca:ECA1909 catalase-peroxidase YP_757911.1 PFAM: peptidase domain protein; KEGG: cya:CYA_2447 hypothetical protein YP_757912.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rso:RS02012 probable acetyl-coenzyme A synthetase (acetate--CoA ligase) protein YP_757913.1 PFAM: Endoribonuclease L-PSP; KEGG: pol:Bpro_0587 endoribonuclease L-PSP YP_757914.1 PFAM: thioesterase superfamily protein; KEGG: eba:ebA2036 putative thioesterase YP_757915.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: jan:Jann_1327 acyl-CoA dehydrogenase-like YP_757916.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_757917.1 PFAM: regulatory protein, MarR; KEGG: bja:bll3434 transcriptional regulatory protein YP_757918.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: reu:Reut_A2183 NAD-dependent epimerase/dehydratase:short-chain dehydrogenase/reductase SDR YP_757919.1 catalyzes the conversion of salicylyl-CoA to gentisyl-CoA YP_757920.1 TIGRFAM: outer membrane autotransporter barrel domain; KEGG: pfo:Pfl_0160 glycosyl hydrolase, BNR repeat YP_757921.1 TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: xcb:XC_4169 cation symporter YP_757922.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: bur:Bcep18194_C7668 GAF sensor hybrid histidine kinase YP_757923.1 PFAM: regulatory protein, LuxR; response regulator receiver; sigma-70 region 4 domain protein; KEGG: mag:amb3889 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain YP_757924.1 PFAM: carbonic anhydrase; KEGG: ccr:CC3569 carbonic anhydrase YP_757925.1 KEGG: cps:CPS_0639 hypothetical protein YP_757926.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: bmb:BruAb2_0886 hypothetical peptidyl-prolyl cis-trans isomerase YP_757927.1 TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; KEGG: bmb:BruAb2_0885 NarI, respiratory nitrate reductase, gamma subunit YP_757928.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase, delta subunit; KEGG: bmb:BruAb2_0884 NarJ, respiratory nitrate reductase, delta subunit YP_757929.1 TIGRFAM: nitrate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: bmb:BruAb2_0883 NarH, respiratory nitrate reductase, beta subunit YP_757930.1 TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: bms:BRA0299 respiratory nitrate reductase, alpha subunit YP_757931.1 KEGG: hch:HCH_04020 nitrate/nitrite transporter YP_757932.1 PFAM: major facilitator superfamily MFS_1; KEGG: bme:BMEII0948 nitrite extrusion protein YP_757933.1 upregulated by FixLJ/FixK under oxygen limitation; involved in regulation of genes involved in carbon and amino acid metabolism YP_757934.1 KEGG: xoo:XOO3105 molybdopterin guanine dinucleotide synthase YP_757935.1 KEGG: ret:RHE_CH02392 molybdenum cofactor biosynthesis protein; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB YP_757936.1 PFAM: thiamineS protein YP_757937.1 PFAM: molybdopterin biosynthesis MoaE; KEGG: eli:ELI_02790 molybdopterin converting factor, subunit 2 YP_757938.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; KEGG: ret:RHE_CH00872 molybdenum cofactor biosynthesis protein YP_757939.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: cyb:CYB_2860 molybdenum cofactor biosynthesis protein C YP_757940.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: ccr:CC3209 molybdopterin biosynthesis protein MoeA YP_757941.1 PFAM: protein of unknown function DUF81; KEGG: rba:RB9208 conserved hypothetical protein-putative integral membrane protein YP_757942.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: zmo:ZMO1283 LacI family transcriptional regulator YP_757943.1 TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: xoo:XOO0333 cation symporter YP_757944.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ccr:CC2804 TonB-dependent receptor YP_757945.1 PFAM: FAD dependent oxidoreductase; tryptophan halogenase; KEGG: ccr:CC2805 tryptophan halogenase, putative YP_757946.1 PFAM: tryptophan halogenase; KEGG: ccr:CC2806 hypothetical protein YP_757947.1 PFAM: FAD dependent oxidoreductase; tryptophan halogenase; KEGG: xoo:XOO0248 tryptophan halogenase YP_757948.1 PFAM: FAD dependent oxidoreductase; tryptophan halogenase; KEGG: sde:Sde_1096 tryptophan halogenase, putative YP_757949.1 PFAM: glycoside hydrolase, family 9; glycoside hydrolase, family 9 domain protein Ig domain protein; KEGG: ccr:CC2227 glycosyl hydrolase, family 9 YP_757950.1 PFAM: glycoside hydrolase, family 3 domain protein; KEGG: xcv:XCV1823 glucan 1,4-beta-glucosidase precursor YP_757951.1 TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; KEGG: csa:Csal_0925 gluconate transporter YP_757952.1 KEGG: xcb:XC_4205 gluconolactonase precursor; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: SMP-30/Gluconolaconase/LRE domain protein YP_757953.1 PFAM: glycoside hydrolase, family 3 domain protein; KEGG: rru:Rru_A3299 glycoside hydrolase, family 3-like YP_757954.1 TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; KEGG: rpc:RPC_3674 carbohydrate kinase, thermoresistant glucokinase YP_757955.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: eli:ELI_03580 sodium/glucose cotransport protein YP_757956.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: eli:ELI_03145 alpha-amylase, putative YP_757957.1 PFAM: FAD dependent oxidoreductase; tryptophan halogenase; KEGG: nar:Saro_1882 tryptophan halogenase YP_757958.1 PFAM: FAD dependent oxidoreductase; tryptophan halogenase; KEGG: ccr:CC2288 tryptophan halogenase, putative YP_757959.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ccr:CC2287 TonB-dependent receptor YP_757960.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: ccr:CC2285 alpha-glucosidase YP_757961.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ccr:CC2284 transcriptional regulator, LacI family YP_757962.1 PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa1356 sugar transporter YP_757963.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: nar:Saro_1890 alpha amylase, catalytic region YP_757964.1 KEGG: sde:Sde_0590 alpha-glucosidase YP_757965.1 PFAM: putative esterase; KEGG: son:SO4543 hypothetical protein YP_757966.1 SMART: transcription factor jumonji, jmjC domain protein; KEGG: xcb:XC_4055 PASs1-related protein YP_757967.1 PFAM: aldo/keto reductase; KEGG: mlo:mll2491 aryl-alcohol dehydrogenase YP_757968.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: sil:SPO0161 DNA-binding response regulator, LuxR family YP_757969.1 KEGG: rsp:RSP_0512 multisensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_757970.1 PFAM: Heme NO binding domain protein; KEGG: vvy:VV2082 guanylate cyclase-related protein YP_757971.1 KEGG: ccr:CC2628 HfaA protein YP_757972.1 KEGG: ccr:CC2629 HfaB protein YP_757973.1 KEGG: sde:Sde_1294 polyhydroxyalkanoate synthesis repressor PhaR YP_757974.1 PFAM: response regulator receiver; KEGG: mlo:mlr6691 two-component response regulator YP_757975.1 KEGG: mlo:mlr6692 similar to O-linked GlcNAc transferase YP_757977.1 PFAM: glycosyl transferase, family 2; KEGG: mlo:mlr6694 hypothetical protein YP_757980.1 PFAM: transposase IS3/IS911 family protein; KEGG: mlo:mll6089 transposase YP_757981.1 PFAM: transposase IS3/IS911 family protein; KEGG: atc:AGR_L_545 hypothetical protein YP_757982.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mlo:mll7878 UDP-glucose 4-epimerase YP_757983.1 PFAM: transposase IS3/IS911 family protein; KEGG: mag:amb3265 insertion element ISR1 hypothetical 10 kDa protein A3 YP_757984.1 KEGG: lsl:LSL_1558 capsular polysaccharide synthesis protein YP_757985.1 KEGG: jan:Jann_2025 Haemagluttinin motif precursor YP_757987.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: nmu:Nmul_A0104 Sel1-like repeat YP_757988.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: nmu:Nmul_A0104 Sel1-like repeat YP_757989.1 PFAM: permease; ASPIC/UnbV domain protein; KEGG: aba:Acid345_0954 hypothetical protein YP_757990.1 KEGG: mca:MCA1120 general secretion pathway protein K domain protein YP_757991.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; KEGG: mlo:mll6829 general secretion proteinD YP_757995.1 KEGG: pst:PSPTO3312 general secretion pathway protein J, putative YP_757998.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: mlo:mll6827 general secretion proteinG YP_757999.1 PFAM: type II secretion system protein; KEGG: bpm:BURPS1710b_0222 general secretion pathway protein F YP_758000.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: mca:MCA1114 general secretion pathway protein E YP_758001.1 TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Autotransporter beta- domain protein; KEGG: pfo:Pfl_0160 glycosyl hydrolase, BNR repeat YP_758002.1 PFAM: Integrase, catalytic region; KEGG: nar:Saro_1506 transposase YP_758004.1 fusion of ribosomal protein L21 and COG3743 YP_758005.1 involved in the peptidyltransferase reaction during translation YP_758006.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ccr:CC0317 acetyltransferase, GNAT family YP_758007.1 KEGG: ccr:CC2151 hypothetical protein YP_758009.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; GTP1/OBG sub domain protein; KEGG: ccr:CC0315 GTP-binding protein CgtA YP_758010.1 KEGG: sme:SMc03776 gamma-glutamyl kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein YP_758011.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_758012.1 KEGG: noc:Noc_2028 hypothetical protein YP_758013.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: ccr:CC3432 iojap-related protein YP_758014.1 PFAM: protein of unknown function DUF163; KEGG: sil:SPO0220 hypothetical protein YP_758015.1 PFAM: peptidase M23B; KEGG: nha:Nham_0524 peptidase M23B YP_758016.1 KEGG: ccr:CC3435 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_758017.1 PFAM: protein of unknown function DUF610, YibQ; KEGG: ccr:CC3439 hypothetical protein YP_758018.1 hydrolyzes diadenosine polyphosphate YP_758019.1 TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+-transporting two-sector ATPase, delta/epsilon subunit; KEGG: mlo:mll4059 ATP synthase epsilon subunit (ATP-9) YP_758021.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_758022.1 KEGG: sme:SMc02500 probable ATP synthase gamma chain protein; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+-transporting two-sector ATPase, gamma subunit YP_758023.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_758024.1 TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+-transporting two-sector ATPase, delta (OSCP) subunit; KEGG: ccr:CC3450 ATP synthase F1, delta subunit YP_758025.1 PFAM: Integral membrane protein TerC; KEGG: ilo:IL1429 hypothetical protein YP_758026.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_758027.1 PFAM: protein of unknown function DUF484; KEGG: mag:amb4252 hypothetical protein YP_758028.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: ret:RHE_CH03879 tyrosine site-specific integrase/recombinase protein YP_758030.1 PFAM: regulatory protein, MarR; regulatory protein, ArsR; KEGG: ccr:CC2206 hypothetical protein YP_758031.1 PFAM: GCN5-related N-acetyltransferase; KEGG: det:DET0987 acetyltransferase, GNAT family YP_758032.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ccr:CC0342 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase YP_758035.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: rsp:RSP_0964 dihydrolipoamide acetyltransferase YP_758036.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_758037.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_758038.1 KEGG: sme:SMc02480 succinyl-CoA synthetase beta chain; TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein YP_758039.1 KEGG: mag:amb1791 hypothetical protein YP_758040.1 KEGG: rme:Rmet_4682 DoxX YP_758043.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Carotenoid oxygenase; KEGG: rso:RS05214 probable dioxygenase signal peptide protein YP_758044.1 KEGG: ccr:CC0332 hypothetical protein YP_758045.1 PFAM: LytTr DNA-binding region; KEGG: ccr:CC0330 hypothetical protein YP_758046.1 KEGG: ccr:CC0326 hypothetical protein YP_758047.1 PFAM: TspO/MBR family protein; KEGG: sat:SYN_00101 CrtK protein YP_758048.1 TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase; KEGG: ccr:CC3655 malate dehydrogenase YP_758049.1 SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: sco:SCO6119 AraC family transcriptional regulator YP_758050.1 KEGG: ccr:CC2458 hypothetical protein YP_758051.1 PFAM: O-methyltransferase, family 3; KEGG: sru:SRU_2416 O-methyltransferase family protein YP_758052.1 PFAM: AFG1-family ATPase; KEGG: ccr:CC3531 hypothetical protein YP_758053.1 KEGG: cps:CPS_3113 hypothetical protein YP_758054.1 PFAM: thioesterase superfamily protein; KEGG: bpm:BURPS1710b_1824 thioesterase family protein YP_758055.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: bur:Bcep18194_B2077 iron-containing alcohol dehydrogenase YP_758057.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: ccr:CC2274 methylmalonate-semialdehyde dehydrogenase, putative YP_758058.1 TIGRFAM: outer membrane autotransporter barrel domain; PFAM: peptidase S1 and S6, chymotrypsin/Hap; Autotransporter beta- domain protein; KEGG: zmo:ZMO1482 serine protease YP_758060.1 PFAM: regulatory protein, ArsR; KEGG: rpb:RPB_1641 protein tyrosine phosphatase YP_758062.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: ret:RHE_CH03878 putative acyltransferase protein YP_758063.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_758064.1 KEGG: mlo:mll4262 hypothetical protein YP_758065.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_758066.1 PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: atc:AGR_C_4793 succinate dehydrogenase membrane anchor subunit YP_758067.1 PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: nha:Nham_3616 succinate dehydrogenase, cytochrome b subunit YP_758068.1 PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: bja:bll6494 putative oxidoreductase YP_758069.1 PFAM: protein of unknown function DUF885; KEGG: ccr:CC1056 hypothetical protein YP_758071.1 KEGG: mlo:mlr4319 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: protein of unknown function UPF0004; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_758072.1 KEGG: bja:bll0473 probable cell division protein; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; SMART: AAA ATPase YP_758073.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: bms:BR0706 hypothetical protein YP_758074.1 KEGG: mlo:mlr4321 intracellular septation protein YP_758075.1 PFAM: regulatory protein, MarR; transcriptional regulator PadR family protein; KEGG: ccr:CC3677 transcriptional regulator, MarR family YP_758076.1 PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: sil:SPO2314 periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily YP_758077.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: mlo:mlr8327 heme exporter protein C YP_758078.1 PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: pfo:Pfl_1578 cytochrome c-type biogenesis protein CcmB YP_758079.1 KEGG: sil:SPO2317 heme exporter protein CcmA; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase YP_758080.1 TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: bme:BMEI1855 aconitate hydratase YP_758081.1 PFAM: protein of unknown function DUF1223; KEGG: ccr:CC3666 hypothetical protein YP_758082.1 PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: ccr:CC0247 response regulator YP_758083.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: mlo:mlr5307 two-component, sensor histidine protein kinase YP_758084.1 PFAM: electron transport protein SCO1/SenC; KEGG: rru:Rru_A3360 electron transport protein SCO1/SenC YP_758085.1 TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: sde:Sde_1875 hypothetical protein YP_758086.1 KEGG: ret:RHE_PF00432 hypothetical protein YP_758087.1 KEGG: ccr:CC0252 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase YP_758088.1 PFAM: sodium/hydrogen exchanger; KEGG: noc:Noc_0521 sodium/hydrogen exchanger YP_758091.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: pol:Bpro_3128 glycerophosphoryl diester phosphodiesterase YP_758092.1 PFAM: Cold-shock protein, DNA-binding; Ribonuclease B, OB region N-terminal domain; SMART: Cold shock protein; KEGG: mlo:msr2658 probable cold shock protein YP_758094.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sde:Sde_2413 response regulator receiver domain protein (CheY-like) YP_758095.1 KEGG: rpb:RPB_0338 aspartate-semialdehyde dehydrogenase, USG-1 related; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region YP_758096.1 TIGRFAM: RarD protein, DMT superfamily transporter; KEGG: ade:Adeh_0760 hypothetical protein YP_758097.1 PFAM: alpha/beta hydrolase fold; KEGG: ccr:CC1229 epoxide hydrolase YP_758099.1 PFAM: beta-lactamase; KEGG: ccr:CC0255 esterase A YP_758100.1 TIGRFAM: pyridoxal kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: ccr:CC0256 pyridoxine kinase YP_758101.1 PFAM: HpcH/HpaI aldolase; KEGG: bme:BMEII0413 citrate lyase beta chain / citryl-CoA lyase subunit YP_758102.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: hch:HCH_01858 arsenate reductase YP_758103.1 KEGG: ret:RHE_CH01011 hypothetical protein YP_758104.1 KEGG: cvi:CV2106 probable transcriptional regulator YP_758105.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ccr:CC3697 transcriptional regulator, LysR family YP_758106.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bmb:BruAb2_0522 AhpC, alkyl hydroperoxide reductase C YP_758107.1 TIGRFAM: alkylhydroperoxidase, AhpD family; alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: rpc:RPC_4444 alkylhydroperoxidase, AhpD family YP_758109.1 PFAM: sodium:dicarboxylate symporter; KEGG: son:SO0922 proton/glutamate symporter YP_758110.1 KEGG: sru:SRU_2719 hypothetical protein YP_758113.1 KEGG: ccr:CC3653 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; SMART: AAA ATPase YP_758115.1 PFAM: ribosomal protein S16; KEGG: ccr:CC3652 30S ribosomal protein S16 YP_758116.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: rsp:RSP_1047 putative 16S rRNA processing protein YP_758117.1 KEGG: ccr:CC0198 tRNA (guanine-N1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase YP_758118.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_758119.1 PFAM: sulfotransferase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: nar:Saro_3035 sulfotransferase YP_758120.1 KEGG: vvy:VV1099 transglutaminase-like enzyme YP_758121.1 PFAM: protein of unknown function DUF1025; KEGG: ccr:CC3483 hypothetical protein YP_758122.1 PFAM: protein of unknown function DUF1052; KEGG: ccr:CC3467 hypothetical protein YP_758123.1 PFAM: ThiJ/PfpI domain protein; KEGG: pfo:Pfl_1835 ThiJ/PfpI YP_758124.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ilo:IL1591 glyoxalase/dioxygenase superfamily protein YP_758125.1 KEGG: pae:PA3669 hypothetical protein YP_758126.1 KEGG: pae:PA3670 hypothetical protein YP_758127.1 KEGG: pae:PA3671 putative ABC-2 type transport system permease protein YP_758128.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mca:MCA1561 ABC transporter, ATP-binding protein YP_758129.1 KEGG: atc:AGR_C_4863 hypothetical protein YP_758130.1 KEGG: ccr:CC3663 conserved hypothetical protein YP_758131.1 TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; KEGG: mag:amb4329 2'-5' RNA ligase YP_758132.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: csa:Csal_1590 protein tyrosine phosphatase YP_758133.1 PFAM: Phosphoglycerate mutase YP_758134.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cyb:CYB_1640 sensory box histidine kinase/response regulator YP_758135.1 PFAM: argininosuccinate synthase; ExsB family protein; KEGG: rsp:RSP_1212 argininosuccinate synthase YP_758136.1 PFAM: glutaminase; KEGG: ftl:FTL_1900 L-glutaminase YP_758137.1 KEGG: deh:cbdb_A1169 hypothetical protein YP_758138.1 PFAM: regulatory protein, ArsR; KEGG: ccr:CC3028 transcriptional regulator, ArsR family YP_758139.1 KEGG: rpd:RPD_0387 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase YP_758141.1 PFAM: protein of unknown function DUF1674; KEGG: jan:Jann_4039 protein of unknown function DUF1674 YP_758142.1 putative metalloprotease YP_758143.1 PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; methyltransferase small; Methyltransferase type 11; KEGG: nwi:Nwi_0156 tRNA and rRNA cytosine-C5-methylase YP_758144.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: nar:Saro_0104 ribulose-phosphate 3-epimerase YP_758145.1 PFAM: Heparinase II/III family protein; KEGG: nwi:Nwi_0157 heparinase II/III-like YP_758146.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rru:Rru_A3656 polysaccharide biosynthesis protein CapD YP_758147.1 KEGG: sil:SPO3374 bifunctional purine biosynthesis protein PurH; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme; MGS domain protein YP_758148.1 PFAM: dienelactone hydrolase; KEGG: ccr:CC0087 hypothetical protein YP_758149.1 PFAM: NAD-glutamate dehydrogenase; KEGG: ccr:CC0088 hypothetical protein YP_758151.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bja:blr4132 hypothetical protein YP_758153.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bja:bll2786 transcriptional regulatory protein YP_758154.1 PFAM: helix-turn-helix domain protein; KEGG: sme:SMc01110 DNA-binding protein YP_758156.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: ccr:CC0111 DNA-binding protein, putative YP_758157.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: ccr:CC0110 thioredoxin YP_758158.1 PFAM: protein of unknown function DUF343; KEGG: ccr:CC0108 hypothetical protein YP_758159.1 PFAM: protein of unknown function DUF971; KEGG: mag:amb0010 hypothetical protein YP_758160.1 PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: sde:Sde_1334 oxidoreductase YP_758161.1 KEGG: eli:ELI_10435 hypothetical protein YP_758162.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: ccr:CC0107 2-octaprenyl-6-methoxyphenol hydroxylase YP_758163.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: ccr:CC3704 cell division protein FtsK, putative YP_758164.1 KEGG: hch:HCH_04629 hypothetical protein YP_758165.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: mag:amb0017 outer membrane lipoprotein-sorting protein YP_758167.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rpa:RPA0281 possible exodeoxyribonuclease III YP_758169.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ccr:CC3743 DNA-binding response regulator YP_758170.1 KEGG: ccr:CC3744 hypothetical protein YP_758171.1 TIGRFAM: Protein of unknown function UPF0001; PFAM: alanine racemase domain protein; KEGG: ret:RHE_CH04115 hypothetical protein YP_758172.1 PFAM: thiamine monophosphate synthase; KEGG: ccr:CC3746 hypothetical protein YP_758173.1 KEGG: ccr:CC3747 hypothetical protein YP_758175.1 KEGG: ccr:CC3748 hypothetical protein YP_758176.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_758177.1 KEGG: ccr:CC3750 hypothetical protein YP_758178.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; KEGG: rru:Rru_A3629 DNA polymerase III, delta subunit YP_758179.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: ccr:CC3752 chromosome partitioning protein ParB YP_758180.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: ccr:CC3753 chromosome partitioning protein ParA YP_758181.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: rru:Rru_A3626 glucose inhibited division protein YP_758182.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_758183.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_758184.1 KEGG: ccr:CC3757 hypothetical protein YP_758185.1 PFAM: LytTr DNA-binding region; KEGG: xcb:XC_2338 regulatory protein YP_758186.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: ccr:CC0778 glutathione S-transferase family protein YP_758187.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sru:SRU_1538 glycerophosphodiester phosphodiesterase YP_758188.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mag:amb4555 NADPH:quinone reductase and related Zn-dependent oxidoreductase YP_758189.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_758190.1 PFAM: conserved hypothetical protein 701; KEGG: nha:Nham_0111 conserved hypothetical protein 701 YP_758191.1 PFAM: ferrochelatase; KEGG: ccr:CC3762 ferrochelatase YP_758192.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_758193.1 PFAM: protein of unknown function DUF299; KEGG: ccr:CC0001 hypothetical protein YP_758194.1 PFAM: Maf family protein; KEGG: ccr:CC0002 Maf/YceF/YhdE family protein YP_758195.1 PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; KEGG: ccr:CC0003 shikimate 5-dehydrogenase YP_758196.1 KEGG: ccr:CC0004 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_758197.1 KEGG: ccr:CC0005 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease YP_758198.1 TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB; KEGG: rpc:RPC_0298 protein-export protein SecB YP_758199.1 PFAM: import inner membrane translocase, subunit Tim44; KEGG: mag:amb4543 hypothetical protein YP_758200.1 PFAM: MltA domain protein; 3D domain protein; KEGG: tbd:Tbd_2232 membrane-bound lytic murein transglycosylase A YP_758201.1 PFAM: Smr protein/MutS2; KEGG: bja:blr0644 hypothetical protein YP_758202.1 heat shock protein involved in degradation of misfolded proteins YP_758203.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rme:Rmet_4906 glyoxalase/bleomycin resistance protein/dioxygenase YP_758206.1 heat shock protein involved in degradation of misfolded proteins YP_758207.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: dar:Daro_3588 PAS:GGDEF YP_758208.1 PFAM: PfkB domain protein; KEGG: ccr:CC3733 carbohydrate kinase, PfkB family YP_758209.1 KEGG: eli:ELI_02845 hypothetical protein YP_758210.1 KEGG: rso:RSc1005 probable endonuclease III protein; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop YP_758211.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: nha:Nham_0452 lysine exporter protein (LysE/YggA) YP_758212.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein, AraC type; methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: ccr:CC3729 ada regulatory protein YP_758214.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: csa:Csal_0685 glyoxalase/bleomycin resistance protein/dioxygenase YP_758215.1 PFAM: Helix-turn-helix, type 11 domain protein; KEGG: mlo:mlr3764 transcriptional regulator(repressor protein) YP_758216.1 PFAM: dihydrodipicolinate reductase; KEGG: ccr:CC3550 dihydrodipicolinate reductase YP_758218.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_758219.1 TIGRFAM: methyltransferase FkbM family; KEGG: bja:blr0518 hypothetical protein YP_758220.1 TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; KEGG: mlo:mll4757 heat shock protein dnaK (70) YP_758221.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: ret:RHE_CH00039 alkylated DNA repair protein YP_758222.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: sil:SPO3272 glutamate synthase family protein YP_758223.1 PFAM: GrpE protein; KEGG: mlo:mll3220 heat shock protein (HSP-70 COFACTOR), grpE YP_758224.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_758225.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_758226.1 PFAM: putative esterase; KEGG: oih:OB3377 hypothetical protein YP_758227.1 SMART: helix-turn-helix domain protein; KEGG: ccr:CC0150 transcriptional regulator, Cro/CI family YP_758229.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: mag:amb4499 HAM1 protein homolog YP_758230.1 KEGG: ccr:CC0145 oxygen-independent coproporphyrinogen III oxidase, putative; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_758231.1 KEGG: mag:amb4501 ABC-type branched-chain amino acid transport systems, periplasmic component YP_758232.1 TIGRFAM: Protein of unknown function UPF0011; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ccr:CC0144 tetrapyrrole methylase family protein YP_758233.1 PFAM: protein of unknown function UPF0102; KEGG: mlo:mlr4633 predicted endonuclease YP_758234.1 PFAM: transport-associated; KEGG: aph:APH_0192 putative osmotically inducible protein YP_758235.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_758236.1 KEGG: ccr:CC0140 ComM protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_758237.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: ccr:CC0138 sensor histidine kinase/response regulator YP_758238.1 PFAM: major facilitator superfamily MFS_1; KEGG: nmu:Nmul_A0223 major facilitator superfamily MFS_1 YP_758239.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_758240.1 This protein performs the mismatch recognition step during the DNA repair process YP_758241.1 KEGG: ccr:CC0013 [protein-pII] uridylyltransferase; TIGRFAM: protein-P-II uridylyltransferase; PFAM: amino acid-binding ACT domain protein; metal-dependent phosphohydrolase, HD sub domain; GlnD PII-uridylyltransferase; SMART: metal-dependent phosphohydrolase, HD region YP_758242.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: mag:amb4409 uncharacterized membrane protein, putative virulence factor YP_758243.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_758244.1 PFAM: protein of unknown function DUF461; KEGG: rru:Rru_A3421 protein of unknown function DUF461 YP_758246.1 KEGG: rru:Rru_A2501 conserved hypothetical cytosolic protein YP_758247.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: rsp:RSP_2214 nitrogen-fixing NifU YP_758248.1 PFAM: peptidase M22, glycoprotease; KEGG: ret:RHE_CH00380 probable O-sialoglycoprotein endopeptidase protein YP_758249.1 PFAM: GCN5-related N-acetyltransferase; KEGG: gox:GOX0774 ribosomal-protein-alanine acetyltransferase YP_758250.1 PFAM: ferric-uptake regulator; KEGG: ccr:CC0057 ferric uptake regulation protein YP_758251.1 PFAM: major facilitator superfamily MFS_1; KEGG: lic:LIC12361 permease YP_758252.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_758253.1 PFAM: PhoH family protein; KEGG: ccr:CC0055 phosphate starvation-inducible protein PhoH, putative YP_758254.1 PFAM: protein of unknown function UPF0054; KEGG: ccr:CC0054 conserved hypothetical protein YP_758255.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: ccr:CC0053 CBS domain protein YP_758256.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ccr:CC0052 apolipoprotein N-acyltransferase YP_758257.1 PFAM: helix-turn-helix domain protein; KEGG: ccr:CC0051 transcriptional regulator, Cro/CI family YP_758258.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_758259.1 PFAM: protein of unknown function DUF150; KEGG: sil:SPO0064 hypothetical protein YP_758260.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_758261.1 PFAM: protein of unknown function DUF448; KEGG: ccr:CC0043 hypothetical protein YP_758262.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_758263.1 PFAM: protein of unknown function DUF1486 YP_758264.1 PFAM: protein of unknown function DUF1486 YP_758265.1 PFAM: ribosome-binding factor A; KEGG: mag:amb4070 ribosome-binding factor A YP_758266.1 PFAM: beta-lactamase; KEGG: sth:STH2021 D-alanyl-D-alanine carboxypeptidase YP_758267.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_758268.1 PFAM: ribosomal protein S15; KEGG: ccr:CC0035 30S ribosomal protein S15 YP_758269.1 KEGG: ccr:CC0034 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein YP_758270.1 KEGG: sme:SMc00239 hypothetical protein YP_758271.1 PFAM: LytTr DNA-binding region; KEGG: xac:XAC1874 regulatory protein YP_758272.1 KEGG: ccr:CC1611 hypothetical protein YP_758273.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: ccr:CC2671 hypothetical protein YP_758274.1 KEGG: dvu:DVU2841 type II restriction endonuclease, putative YP_758275.1 PFAM: DNA mismatch endonuclease vsr; KEGG: bxe:Bxe_A3371 putative DNA mismatch endonuclease YP_758276.1 KEGG: bxe:Bxe_A3354 C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase YP_758277.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ccr:CC3717 enoyl-(acyl-carrier-protein) reductase YP_758278.1 PFAM: beta-ketoacyl synthase; KEGG: nwi:Nwi_0033 3-oxoacyl-(acyl carrier protein) synthase YP_758279.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP YP_758280.1 PFAM: protein of unknown function DUF1058; KEGG: rpb:RPB_0615 protein of unknown function DUF1058 YP_758281.1 PFAM: beta-lactamase domain protein; KEGG: sde:Sde_1764 Na-translocating NADH-quinone reductase subunit A YP_758282.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: ccr:CC3723 prolyl oligopeptidase family protein YP_758283.1 PFAM: peptidase S15; peptidase S9, prolyl oligopeptidase active site domain protein; dienelactone hydrolase; phospholipase/Carboxylesterase; KEGG: ccr:CC3723 prolyl oligopeptidase family protein YP_758284.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: ccr:CC3726 molybdopterin biosynthesis protein MoeB YP_758285.1 SMART: AAA ATPase; KEGG: pgi:PG0062 TPR domain protein YP_758286.1 TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: bme:BMEI0101 cysteine synthase A YP_758287.1 KEGG: mag:amb0201 dUTPase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase YP_758288.1 KEGG: nar:Saro_1430 methyl-accepting chemotaxis sensory transducer YP_758289.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: ccr:CC3709 ubiquinone biosynthesis protein AarF, putative YP_758291.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: ccr:CC3708 ubiquinone/menaquinone biosynthesis methlytransferase UbiE YP_758292.1 KEGG: ath:At1g62190 expressed protein YP_758293.1 KEGG: sil:SPO0146 formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycolase YP_758294.1 PFAM: GumN family protein; KEGG: ccr:CC2229 hypothetical protein YP_758295.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rme:Rmet_3162 enoyl-CoA hydratase/isomerase YP_758296.1 PFAM: ribosomal protein S20; KEGG: sme:SMc01152 30S ribosomal protein S20