-- dump date   	20250217_000532
-- class       	Genbank::Contig
-- table       	contig_comment
-- id	comment
NC_012881.1	REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001649.1.REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov)REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 3 of 12REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 3 of 12 Pseudo Genes (incomplete)         :: 8 of 12REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 3 of 12 Pseudo Genes (incomplete)         :: 8 of 12 Pseudo Genes (internal stop)      :: 2 of 12REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 3 of 12 Pseudo Genes (incomplete)         :: 8 of 12 Pseudo Genes (internal stop)      :: 2 of 12 Pseudo Genes (multiple problems)  :: 1 of 12REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 3 of 12 Pseudo Genes (incomplete)         :: 8 of 12 Pseudo Genes (internal stop)      :: 2 of 12 Pseudo Genes (multiple problems)  :: 1 of 12 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 3 of 12 Pseudo Genes (incomplete)         :: 8 of 12 Pseudo Genes (internal stop)      :: 2 of 12 Pseudo Genes (multiple problems)  :: 1 of 12 ##Genome-Annotation-Data-END## ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 3 of 12 Pseudo Genes (incomplete)         :: 8 of 12 Pseudo Genes (internal stop)      :: 2 of 12 Pseudo Genes (multiple problems)  :: 1 of 12 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfovibrio salexigens DSM 2638REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 3 of 12 Pseudo Genes (incomplete)         :: 8 of 12 Pseudo Genes (internal stop)      :: 2 of 12 Pseudo Genes (multiple problems)  :: 1 of 12 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfovibrio salexigens DSM 2638 Culture Collection ID :: DSM 2638, ATCC 14822REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 3 of 12 Pseudo Genes (incomplete)         :: 8 of 12 Pseudo Genes (internal stop)      :: 2 of 12 Pseudo Genes (multiple problems)  :: 1 of 12 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfovibrio salexigens DSM 2638 Culture Collection ID :: DSM 2638, ATCC 14822 GOLD Stamp ID         :: Gi03120REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 3 of 12 Pseudo Genes (incomplete)         :: 8 of 12 Pseudo Genes (internal stop)      :: 2 of 12 Pseudo Genes (multiple problems)  :: 1 of 12 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfovibrio salexigens DSM 2638 Culture Collection ID :: DSM 2638, ATCC 14822 GOLD Stamp ID         :: Gi03120 Isolation Site        :: mud in British GuyanaREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 3 of 12 Pseudo Genes (incomplete)         :: 8 of 12 Pseudo Genes (internal stop)      :: 2 of 12 Pseudo Genes (multiple problems)  :: 1 of 12 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfovibrio salexigens DSM 2638 Culture Collection ID :: DSM 2638, ATCC 14822 GOLD Stamp ID         :: Gi03120 Isolation Site        :: mud in British Guyana Oxygen Requirement    :: AnaerobeREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 3 of 12 Pseudo Genes (incomplete)         :: 8 of 12 Pseudo Genes (internal stop)      :: 2 of 12 Pseudo Genes (multiple problems)  :: 1 of 12 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfovibrio salexigens DSM 2638 Culture Collection ID :: DSM 2638, ATCC 14822 GOLD Stamp ID         :: Gi03120 Isolation Site        :: mud in British Guyana Oxygen Requirement    :: Anaerobe Cell Shape            :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 3 of 12 Pseudo Genes (incomplete)         :: 8 of 12 Pseudo Genes (internal stop)      :: 2 of 12 Pseudo Genes (multiple problems)  :: 1 of 12 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfovibrio salexigens DSM 2638 Culture Collection ID :: DSM 2638, ATCC 14822 GOLD Stamp ID         :: Gi03120 Isolation Site        :: mud in British Guyana Oxygen Requirement    :: Anaerobe Cell Shape            :: Rod-shaped Motility              :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 3 of 12 Pseudo Genes (incomplete)         :: 8 of 12 Pseudo Genes (internal stop)      :: 2 of 12 Pseudo Genes (multiple problems)  :: 1 of 12 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfovibrio salexigens DSM 2638 Culture Collection ID :: DSM 2638, ATCC 14822 GOLD Stamp ID         :: Gi03120 Isolation Site        :: mud in British Guyana Oxygen Requirement    :: Anaerobe Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 3 of 12 Pseudo Genes (incomplete)         :: 8 of 12 Pseudo Genes (internal stop)      :: 2 of 12 Pseudo Genes (multiple problems)  :: 1 of 12 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfovibrio salexigens DSM 2638 Culture Collection ID :: DSM 2638, ATCC 14822 GOLD Stamp ID         :: Gi03120 Isolation Site        :: mud in British Guyana Oxygen Requirement    :: Anaerobe Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 3 of 12 Pseudo Genes (incomplete)         :: 8 of 12 Pseudo Genes (internal stop)      :: 2 of 12 Pseudo Genes (multiple problems)  :: 1 of 12 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfovibrio salexigens DSM 2638 Culture Collection ID :: DSM 2638, ATCC 14822 GOLD Stamp ID         :: Gi03120 Isolation Site        :: mud in British Guyana Oxygen Requirement    :: Anaerobe Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Temperature Optimum   :: 37 CREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 3 of 12 Pseudo Genes (incomplete)         :: 8 of 12 Pseudo Genes (internal stop)      :: 2 of 12 Pseudo Genes (multiple problems)  :: 1 of 12 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfovibrio salexigens DSM 2638 Culture Collection ID :: DSM 2638, ATCC 14822 GOLD Stamp ID         :: Gi03120 Isolation Site        :: mud in British Guyana Oxygen Requirement    :: Anaerobe Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Temperature Optimum   :: 37 C Gram Staining         :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 3 of 12 Pseudo Genes (incomplete)         :: 8 of 12 Pseudo Genes (internal stop)      :: 2 of 12 Pseudo Genes (multiple problems)  :: 1 of 12 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfovibrio salexigens DSM 2638 Culture Collection ID :: DSM 2638, ATCC 14822 GOLD Stamp ID         :: Gi03120 Isolation Site        :: mud in British Guyana Oxygen Requirement    :: Anaerobe Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Temperature Optimum   :: 37 C Gram Staining         :: gram- Biotic Relationship   :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 3 of 12 Pseudo Genes (incomplete)         :: 8 of 12 Pseudo Genes (internal stop)      :: 2 of 12 Pseudo Genes (multiple problems)  :: 1 of 12 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfovibrio salexigens DSM 2638 Culture Collection ID :: DSM 2638, ATCC 14822 GOLD Stamp ID         :: Gi03120 Isolation Site        :: mud in British Guyana Oxygen Requirement    :: Anaerobe Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Temperature Optimum   :: 37 C Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 3 of 12 Pseudo Genes (incomplete)         :: 8 of 12 Pseudo Genes (internal stop)      :: 2 of 12 Pseudo Genes (multiple problems)  :: 1 of 12 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfovibrio salexigens DSM 2638 Culture Collection ID :: DSM 2638, ATCC 14822 GOLD Stamp ID         :: Gi03120 Isolation Site        :: mud in British Guyana Oxygen Requirement    :: Anaerobe Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Temperature Optimum   :: 37 C Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: MudREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 3 of 12 Pseudo Genes (incomplete)         :: 8 of 12 Pseudo Genes (internal stop)      :: 2 of 12 Pseudo Genes (multiple problems)  :: 1 of 12 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfovibrio salexigens DSM 2638 Culture Collection ID :: DSM 2638, ATCC 14822 GOLD Stamp ID         :: Gi03120 Isolation Site        :: mud in British Guyana Oxygen Requirement    :: Anaerobe Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Temperature Optimum   :: 37 C Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Mud Phenotypes            :: Sulfate reducerREFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 3 of 12 Pseudo Genes (incomplete)         :: 8 of 12 Pseudo Genes (internal stop)      :: 2 of 12 Pseudo Genes (multiple problems)  :: 1 of 12 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfovibrio salexigens DSM 2638 Culture Collection ID :: DSM 2638, ATCC 14822 GOLD Stamp ID         :: Gi03120 Isolation Site        :: mud in British Guyana Oxygen Requirement    :: Anaerobe Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Temperature Optimum   :: 37 C Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Mud Phenotypes            :: Sulfate reducer ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001649.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083800 Source DNA available from Terry C. Hazen (TCHazen@lbl.gov) Organism available from DSMZ: DSM 2638 Contacts: Terry C. Hazen (TCHazen@lbl.gov)           David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000023445.1-RS_2024_05_01 Annotation Date                   :: 05/01/2024 00:57:09 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,935 CDSs (total)                      :: 3,827 Genes (coding)                    :: 3,815 CDSs (with protein)               :: 3,815 Genes (RNA)                       :: 108 rRNAs                             :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S) tRNAs                             :: 89 ncRNAs                            :: 4 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 3 of 12 Pseudo Genes (incomplete)         :: 8 of 12 Pseudo Genes (internal stop)      :: 2 of 12 Pseudo Genes (multiple problems)  :: 1 of 12 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfovibrio salexigens DSM 2638 Culture Collection ID :: DSM 2638, ATCC 14822 GOLD Stamp ID         :: Gi03120 Isolation Site        :: mud in British Guyana Oxygen Requirement    :: Anaerobe Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Temperature Optimum   :: 37 C Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Mud Phenotypes            :: Sulfate reducer ##Metadata-END## COMPLETENESS: full length.