-- dump date   	20140619_140059
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_001338879.1	TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; SMART: AAA ATPase; KEGG: psp:PSPPH_0001 chromosomal replication initiator protein DnaA
YP_001338880.1	binds the polymerase to DNA and acts as a sliding clamp
YP_001338881.1	Required for DNA replication; binds preferentially to single-stranded, linear DNA
YP_001338882.1	KEGG: maq:Maqu_0005 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II
YP_001338883.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; TrkA-N domain protein; NmrA family protein; KEGG: eca:ECA4449 hypothetical protein
YP_001338884.1	PFAM: helix-turn-helix HxlR type; KEGG: sbo:SBO_4232 hypothetical protein
YP_001338885.1	KEGG: aha:AHA_1954 hypothetical protein
YP_001338886.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aha:AHA_1953 ferrichrome-iron receptor
YP_001338887.1	PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: aha:AHA_1952 transcriptional activator
YP_001338888.1	PFAM: major facilitator superfamily MFS_1; KEGG: rno:337920 Na+ dependent glucose transporter 1
YP_001338889.1	TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: abo:ABO_0007 histidinol-phosphatase, putatitve
YP_001338890.1	TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: aci:ACIAD1670 hypothetical protein
YP_001338891.1	TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: hch:HCH_00025 trk-type K+ transport system, membrane components
YP_001338892.1	PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: csa:Csal_2872 TrkA
YP_001338893.1	TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: sde:Sde_0019 Sun protein
YP_001338894.1	TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: ppr:PBPRA3580 putative Methionyl-tRNA formyltransferase
YP_001338895.1	TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; KEGG: psp:PSPPH_0021 peptide deformylase
YP_001338896.1	TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: sde:Sde_0023 filamentous haemagglutinin-like
YP_001338897.1	PFAM: RNA-binding S4 domain protein; KEGG: msu:MS2264 ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)
YP_001338898.1	TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: abo:ABO_0280 inositol 1-phosphatase
YP_001338899.1	PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rsq:Rsph17025_0029 alpha amylase, catalytic region
YP_001338900.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pde:Pden_4439 ABC transporter related
YP_001338901.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_2962 probable trehalosemaltose transporter permease protein
YP_001338902.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pde:Pden_4441 binding-protein-dependent transport systems inner membrane component
YP_001338903.1	PFAM: extracellular solute-binding protein family 1; KEGG: pde:Pden_4442 extracellular solute-binding protein, family 1
YP_001338904.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: tma:TM1200 transcriptional regulator, LacI family
YP_001338905.1	PFAM: protein of unknown function DUF1037; KEGG: mlo:mll3105 hypothetical protein
YP_001338906.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: atc:AGR_L_2956 probable trehalosemaltose utilization protein, function
YP_001338907.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bra:BRADO0445 putative oxidoreductase/dehydrogenase protein
YP_001338908.1	PFAM: regulatory protein TetR; KEGG: hch:HCH_03198 transcriptional regulator
YP_001338909.1	PFAM: Beta-ketoacyl synthase; KEGG: csa:Csal_2911 beta-ketoacyl synthase
YP_001338910.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pin:Ping_0572 TRAP dicarboxylate transporter, DctM subunit
YP_001338911.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pin:Ping_0571 tripartite ATP-independent periplasmic (TRAP) C4-dicarboxylate transporter subunit DctQ
YP_001338912.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pin:Ping_0570 TRAP dicarboxylate transporter-DctP subunit
YP_001338913.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rfr:Rfer_0374 transcriptional regulator, LysR family
YP_001338914.1	PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sit:TM1040_3872 GntR-like
YP_001338915.1	PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: csa:Csal_2974 mandelate racemase/muconate lactonizing enzyme
YP_001338916.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: csa:Csal_2975 alcohol dehydrogenase GroES-like protein
YP_001338917.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: mta:Moth_0422 TRAP dicarboxylate transporter, DctP subunit
YP_001338918.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: mta:Moth_0423 tripartite ATP-independent periplasmic transporter, DctQ component
YP_001338919.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: mta:Moth_0424 TRAP dicarboxylate transporter-DctM subunit
YP_001338920.1	PFAM: Malate/L-lactate dehydrogenase; KEGG: pol:Bpro_3972 malate/L-lactate dehydrogenase
YP_001338921.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: csa:Csal_2976 TRAP dicarboxylate transporter, DctP subunit
YP_001338922.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: csa:Csal_2977 tripartite ATP-independent periplasmic transporter, DctQ component
YP_001338923.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: csa:Csal_2978 TRAP dicarboxylate transporter-DctM subunit
YP_001338924.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vvy:VVA0215 transcriptional regulator
YP_001338925.1	TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: slo:Shew_3172 4-aminobutyrate aminotransferase
YP_001338926.1	TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: azo:azo1920 probable succinate-semialdehyde dehydrogenase [NAD(P)+]
YP_001338927.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: vpa:VPA1656 ferric vibrioferrin receptor
YP_001338928.1	PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sit:TM1040_3324 transcriptional regulator, GntR family
YP_001338929.1	PFAM: proline racemase; KEGG: sil:SPOA0266 proline racemase, putative
YP_001338930.1	PFAM: dihydrodipicolinate synthetase; KEGG: sit:TM1040_3198 dihydrodipicolinate synthetase
YP_001338933.1	KEGG: cph:Cpha266_2199 hypothetical protein
YP_001338934.1	KEGG: cte:CT1927 hypothetical protein
YP_001338935.1	TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: hch:HCH_00873 dihydrolipoamide dehydrogenase
YP_001338936.1	PFAM: regulatory protein TetR; KEGG: ret:RHE_CH02697 probable transcriptional regulator protein, TetR family
YP_001338937.1	Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA
YP_001338938.1	catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis
YP_001338939.1	TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: pen:PSEEN0031 shikimate 5-dehydrogenase
YP_001338940.1	PFAM: protein of unknown function DUF482; KEGG: maq:Maqu_2871 protein of unknown function DUF482
YP_001338941.1	PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: hch:HCH_06726 predicted transcriptional regulator
YP_001338942.1	PFAM: Glutathione S-transferase domain; KEGG: bra:BRADO1419 glutathione S-transferase
YP_001338943.1	flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine
YP_001338944.1	Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon
YP_001338945.1	PFAM: globin; KEGG: psa:PST_1579 protozoan/cyanobacterial globin family protein
YP_001338946.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: maq:Maqu_0061 MATE efflux family protein
YP_001338947.1	TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: atc:AGR_L_1139 shikimate 5-dehydrogenase
YP_001338948.1	PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: csa:Csal_0403 GntR-like protein
YP_001338949.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: csa:Csal_0405 FAD linked oxidase-like protein
YP_001338950.1	PFAM: Thiolase; KEGG: azo:azo0310 probable beta-ketoadipyl CoA thiolase
YP_001338951.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_001338952.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: sdn:Sden_0304 protein of unknown function DUF6, transmembrane
YP_001338953.1	PFAM: regulatory protein LuxR; KEGG: sdn:Sden_0305 protein of unknown function DUF1486
YP_001338954.1	KEGG: csa:Csal_0405 FAD linked oxidase-like protein
YP_001338955.1	PFAM: KAP P-loop domain protein; KEGG: ppr:PBPRB0094 hypothetical protein
YP_001338956.1	KEGG: sde:Sde_0128 hypothetical protein
YP_001338957.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cvi:CV0581 transcriptional regulator, LysR family
YP_001338958.1	KEGG: pin:Ping_1707 hypothetical protein
YP_001338959.1	TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: sme:SMc04263 putative amino acid carrier transmembrane protein
YP_001338960.1	KEGG: ade:Adeh_3432 phenylalanyl-tRNA synthetase, class IIc
YP_001338961.1	PFAM: major facilitator superfamily MFS_1; KEGG: rru:Rru_A2959 major facilitator superfamily MFS_1
YP_001338962.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: atc:AGR_L_1733 hypothetical protein
YP_001338963.1	KEGG: mlo:mll1820 hypothetical protein
YP_001338964.1	PFAM: regulatory protein GntR HTH; KEGG: yen:YE0931 putative GntR-family transcriptional regulatory protein
YP_001338966.1	TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; KEGG: sfr:Sfri_0224 ubiquinol oxidase, subunit II
YP_001338967.1	TIGRFAM: Cytochrome o ubiquinol oxidase subunit I; PFAM: cytochrome c oxidase subunit I; KEGG: sfr:Sfri_0223 cytochrome-c oxidase
YP_001338968.1	TIGRFAM: Cytochrome o ubiquinol oxidase subunit III; PFAM: cytochrome c oxidase subunit III; KEGG: shn:Shewana3_4033 cytochrome c oxidase, subunit III
YP_001338969.1	TIGRFAM: Cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: pat:Patl_1293 cytochrome c oxidase subunit IV
YP_001338970.1	converts protoheme IX and farnesyl diphosphate to heme O
YP_001338971.1	PFAM: Tannase and feruloyl esterase; KEGG: bra:BRADO2873 putative feruloyl esterase
YP_001338972.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sfx:S3087 putative oxidoreductase
YP_001338973.1	PFAM: regulatory protein MarR; KEGG: rle:RL3785 putative MarR family transcriptional regulator
YP_001338974.1	PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_1874 secretion protein HlyD family protein
YP_001338975.1	TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: shn:Shewana3_2224 drug resistance transporter, EmrB/QacA subfamily
YP_001338976.1	KEGG: vco:VC0395_A1915 hypothetical protein
YP_001338977.1	PFAM: methyltransferase small; Methyltransferase small domain protein; KEGG: pat:Patl_0079 rRNA (guanine-N(2)-)-methyltransferase
YP_001338978.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: hch:HCH_04209 putative threonine efflux protein
YP_001338979.1	KEGG: shm:Shewmr7_0291 acyltransferase 3
YP_001338980.1	PFAM: protein of unknown function DUF1456; KEGG: ppr:PBPRA2338 hypothetical protein
YP_001338981.1	KEGG: pcr:Pcryo_1239 hypothetical protein
YP_001338982.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: psa:PST_1666 benABC operon transcriptional activator BenR
YP_001338983.1	KEGG: tko:TK0741 hypothetical protein
YP_001338984.1	TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; KEGG: cps:CPS_3968 penicillin-binding protein
YP_001338985.1	PFAM: alpha-2-macroglobulin domain protein; KEGG: pmy:Pmen_0730 alpha-2-macroglobulin domain protein
YP_001338986.1	PFAM: major facilitator superfamily MFS_1; KEGG: pfo:Pfl_0659 major facilitator superfamily MFS_1
YP_001338987.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: stm:STM3626 ABC superfamily (atp_bind), dipeptide transport protein
YP_001338988.1	DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF
YP_001338989.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfx:S4193 dipeptide transport system permease protein 2
YP_001338990.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A2357 binding-protein-dependent transport systems inner membrane component
YP_001338991.1	PFAM: extracellular solute-binding protein family 5; KEGG: rru:Rru_A2356 extracellular solute-binding protein, family 5
YP_001338992.1	PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bms:BR0950 oxidoreductase, putative
YP_001338993.1	PFAM: lipolytic protein G-D-S-L family; KEGG: ret:RHE_CH01936 probable arylesterase protein
YP_001338994.1	PFAM: aldehyde dehydrogenase; KEGG: maq:Maqu_3572 aldehyde dehydrogenase
YP_001338995.1	PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: pfl:PFL_2312 methyl-accepting chemotaxis transducer
YP_001338996.1	PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; regulatory protein DeoR; KEGG: bpa:BPP3096 glycerol-3-phosphate regulon repressor protein
YP_001338997.1	PFAM: extracellular solute-binding protein family 1; KEGG: sit:TM1040_0544 extracellular solute-binding protein, family 1
YP_001338998.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sit:TM1040_0543 binding-protein-dependent transport systems inner membrane component
YP_001338999.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc04300 probable ferric iron transport ATP-binding protein
YP_001339000.1	KEGG: sit:TM1040_0541 beta-lactamase-like
YP_001339001.1	PFAM: Phosphoglycerate mutase; KEGG: csa:Csal_3230 phosphoglycerate mutase
YP_001339002.1	KEGG: yen:YE1682 hypothetical protein
YP_001339003.1	KEGG: asa:ASA_0718 hypothetical protein
YP_001339004.1	PFAM: protein of unknown function UPF0131; KEGG: csa:Csal_2119 protein of unknown function UPF0131
YP_001339005.1	TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Ada metal-binding domain protein; methylguanine DNA methyltransferase ribonuclease domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ent:Ent638_0045 methylated-DNA--protein-cysteine methyltransferase
YP_001339006.1	PFAM: phospholipase/Carboxylesterase; KEGG: yen:YE1144 hypothetical protein
YP_001339007.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pfo:Pfl_0657 chemotaxis sensory transducer, cache sensor
YP_001339008.1	PFAM: protein of unknown function DUF81; KEGG: ppr:PBPRA2195 hypothetical protein
YP_001339009.1	PFAM: Pectate lyase/Amb allergen; KEGG: bsu:BG10840 pectate lyase
YP_001339010.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: vvu:VV1_2053 hypothetical protein
YP_001339011.1	PFAM: Negative transcriptional regulator; KEGG: sde:Sde_3707 transcriptional regulator, PaiB-like
YP_001339012.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: hch:HCH_00862 response regulator containing a CheY-like receiver domain and a GGDEF domain
YP_001339013.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: aba:Acid345_4059 multi-sensor hybrid histidine kinase
YP_001339014.1	PFAM: protein of unknown function DUF917; KEGG: cvi:CV3147 hypothetical protein
YP_001339015.1	PFAM: major facilitator superfamily MFS_1; KEGG: pmy:Pmen_1505 major facilitator superfamily MFS_1
YP_001339016.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bra:BRADO6676 putative transcriptional regulatory protein, LysR family
YP_001339017.1	TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; KEGG: sbl:Sbal_3377 methyl-accepting chemotaxis sensory transducer
YP_001339018.1	TIGRFAM: Addiction module antidote protein HI1420; KEGG: neu:NE1355 Cro repressor helix-turn-helix motif:helix-turn-helix motif
YP_001339019.1	PFAM: major facilitator superfamily MFS_1; KEGG: gka:GK2763 hypothetical protein
YP_001339020.1	KEGG: psp:PSPPH_4299 hypothetical protein
YP_001339021.1	PFAM: FAD linked oxidase domain protein; KEGG: atc:AGR_C_3718 glycolate oxidase subunit D-like; D-lactate dehydrogenase-like
YP_001339023.1	KEGG: bpl:BURPS1106A_0536 putative syringomycin biosynthesis enzyme
YP_001339024.1	PFAM: methyladenine glycosylase; KEGG: sit:TM1040_1922 DNA-3-methyladenine glycosylase I
YP_001339025.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: jan:Jann_1407 transcriptional regulator, LysR family
YP_001339026.1	PFAM: extracellular solute-binding protein family 3; KEGG: ppr:PBPRA2185 putative amino acid ABC transporter, periplasmic amino acid-binding protein
YP_001339027.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vvu:VV1_2704 ABC-type amino acid transport system, permease component
YP_001339028.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dps:DP1436 probable amino acid ABC transporter, permease protein
YP_001339029.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRA2188 putative amino acid ABC transporter, ATP-binding protein
YP_001339030.1	PFAM: FAD dependent oxidoreductase; KEGG: rde:RD1_3866 oxidoreductase, putative
YP_001339031.1	PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_03105 histone acetyltransferase HPA2/related acetyltransferase
YP_001339032.1	KEGG: spc:Sputcn32_1461 transferase hexapeptide repeat containing protein
YP_001339033.1	KEGG: pin:Ping_2323 hypothetical protein
YP_001339034.1	PFAM: RimK domain protein ATP-grasp; KEGG: pin:Ping_2322 RimK domain protein ATP-grasp
YP_001339035.1	KEGG: pin:Ping_2321 HPr kinase
YP_001339036.1	PFAM: metallophosphoesterase; KEGG: pin:Ping_2319 hypothetical protein
YP_001339037.1	KEGG: pin:Ping_2318 hypothetical protein
YP_001339038.1	PFAM: chemotaxis sensory transducer; KEGG: mgm:Mmc1_3308 methyl-accepting chemotaxis sensory transducer
YP_001339039.1	PFAM: protein of unknown function DUF1272; KEGG: mlo:msl4947 hypothetical protein
YP_001339040.1	KEGG: sdn:Sden_1542 hypothetical protein
YP_001339041.1	PFAM: histidine acid phosphatase; KEGG: aci:ACIAD1671 hypothetical protein
YP_001339042.1	PFAM: RimK domain protein ATP-grasp; KEGG: maq:Maqu_0076 RimK domain protein ATP-grasp
YP_001339043.1	KEGG: maq:Maqu_2932 hypothetical protein
YP_001339044.1	TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: asa:ASA_4157 RarD protein
YP_001339045.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: rxy:Rxyl_0218 protein of unknown function DUF6, transmembrane
YP_001339046.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: psa:PST_1584 hypothetical protein
YP_001339047.1	PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: rru:Rru_A0758 transcriptional regulator, AraC family
YP_001339048.1	PFAM: beta-lactamase domain protein; KEGG: ret:RHE_PD00028 probable beta-lactamase like protein
YP_001339049.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: rle:pRL100135 putative 1,3-propanediol dehydrogenase
YP_001339050.1	TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: bmb:BruAb1_1628 GabD, succinate-semialdehyde dehydrogenase
YP_001339051.1	TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: ilo:IL1408 NtrC family transcriptional regulator
YP_001339052.1	PFAM: major facilitator superfamily MFS_1; KEGG: sit:TM1040_1097 major facilitator superfamily MFS_1
YP_001339053.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SNARE associated Golgi protein; KEGG: noc:Noc_0589 pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3) component and related enzyme
YP_001339054.1	KEGG: sfr:Sfri_2958 protein of unknown function DUF547
YP_001339055.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: hch:HCH_01626 transcriptional regulator
YP_001339056.1	PFAM: protein of unknown function DUF81; KEGG: hch:HCH_01625 predicted permease
YP_001339057.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA4247 ABC transporter permease protein
YP_001339058.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA4248 ABC transporter permease protein
YP_001339059.1	PFAM: extracellular solute-binding protein family 1; KEGG: eca:ECA4249 ABC transporter periplasmic binding protein
YP_001339060.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: eca:ECA4250 ABC transporter ATP-binding protein
YP_001339061.1	KEGG: hch:HCH_03300 metal-dependent hydrolase of the beta-lactamase superfamily III
YP_001339062.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bam:Bamb_4155 transcriptional regulator, LacI family
YP_001339063.1	PFAM: inositol monophosphatase; KEGG: psa:PST_1593 inositol-1-monophosphatase
YP_001339064.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: cvi:CV0812 hypothetical protein
YP_001339065.1	PFAM: protein of unknown function DUF45; KEGG: shm:Shewmr7_2516 protein of unknown function DUF45
YP_001339066.1	PFAM: Oligogalacturonate-specific porin; KEGG: vvy:VVA1381 hypothetical protein
YP_001339067.1	KEGG: pst:PSPTO_4527 hypothetical protein
YP_001339068.1	TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: vpa:VP3004 hypothetical protein
YP_001339069.1	PFAM: HPP family protein?; KEGG: she:Shewmr4_2802 HPP family protein
YP_001339070.1	PFAM: regulatory protein TetR; KEGG: she:Shewmr4_2801 transcriptional regulator, TetR family
YP_001339071.1	PFAM: protein of unknown function RIO1; KEGG: ppr:PBPRA1235 putative RIO1/ZK632.3/MJ0444 family protein
YP_001339072.1	KEGG: pcr:Pcryo_2352 hypothetical protein
YP_001339073.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: acb:A1S_3345 putative domain GGDEF protein
YP_001339074.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ppd:Ppro_2998 methyl-accepting chemotaxis sensory transducer
YP_001339075.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: ppr:PBPRA1748 putative ATP-dependent RNA helicase, DEAD boxfamily
YP_001339076.1	TIGRFAM: Na+/H+ antiporter NhaC; PFAM: Na+ antiporter NhaC; KEGG: rsh:Rsph17029_1769 Na+/H+ antiporter NhaC
YP_001339077.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cps:CPS_2473 DNA-binding response regulator
YP_001339078.1	KEGG: cps:CPS_2474 bacterial extracellular solute-binding protein, family 3
YP_001339079.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cps:CPS_2475 sensor histidine kinase/response regulator
YP_001339080.1	PFAM: FAD dependent oxidoreductase; KEGG: cps:CPS_2746 oxidoreductase, FAD-dependent
YP_001339081.1	catalyzes the formation of L-proline from L-ornithine
YP_001339082.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cps:CPS_2748 transcriptional regulator, AraC family
YP_001339083.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: maq:Maqu_3791 diguanylate cyclase
YP_001339084.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: jan:Jann_4136 TRAP dicarboxylate transporter-DctM subunit
YP_001339085.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: jan:Jann_4137 tripartite ATP-independent periplasmic transporter, DctQ component
YP_001339086.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rde:RD1_0742 C4-dicarboxylate-binding protein, putative
YP_001339087.1	KEGG: cgt:cgR_0209 hypothetical protein
YP_001339088.1	PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: chy:CHY_1273 transcriptional regulator, IclR family
YP_001339089.1	TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: mta:Moth_0420 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
YP_001339090.1	KEGG: hch:HCH_06066 hypothetical protein
YP_001339091.1	PFAM: glycoside hydrolase family 3 domain protein; KEGG: cth:Cthe_1256 glycoside hydrolase, family 3-like protein
YP_001339092.1	PFAM: regulatory protein TetR; KEGG: oih:OB0328 transcriptional regulator
YP_001339093.1	catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction
YP_001339094.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: neu:NE2510 NADH:flavin oxidoreductase/NADH oxidase
YP_001339095.1	KEGG: pau:PA14_02640 putative malonate transporter, MadM subunit
YP_001339096.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: vvy:VVA0893 methyl-accepting chemotaxis protein
YP_001339097.1	PFAM: aminotransferase class I and II; KEGG: stt:t2265 putative aminotransferase
YP_001339098.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: sde:Sde_3850 hypothetical protein
YP_001339099.1	PFAM: regulatory protein AsnC/Lrp family; KEGG: dps:DP0751 transcription regulator
YP_001339100.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: maq:Maqu_3218 integral membrane sensor signal transduction histidine kinase
YP_001339101.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: maq:Maqu_3217 two component transcriptional regulator, winged helix family
YP_001339102.1	KEGG: maq:Maqu_3214 hypothetical protein
YP_001339103.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; Oxidoreductase FAD-binding domain protein; KEGG: maq:Maqu_3213 flavodoxin/nitric oxide synthase
YP_001339104.1	PFAM: EAL domain protein; GAF domain protein; KEGG: pha:PSHAa1380 hypothetical protein
YP_001339105.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06979 ABC-type sugar transport system, ATPase components
YP_001339106.1	PFAM: Glycosyl hydrolase family 32 domain protein; KEGG: ace:Acel_1363 glycosyl hydrolase family 32, N terminal domain protein
YP_001339107.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_pAT_376 sugar ABC transporter, permease protein
YP_001339108.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_pAT_377 ABC transporter sugar permease
YP_001339109.1	PFAM: extracellular solute-binding protein family 1; KEGG: atc:AGR_pAT_379 putative sugar transport sugar binding protein
YP_001339110.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ret:RHE_PE00360 putative transcriptional regulator protein, LacI family
YP_001339111.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bvi:Bcep1808_1701 alcohol dehydrogenase, zinc-binding domain protein
YP_001339112.1	PFAM: regulatory protein AsnC/Lrp family; KEGG: bvi:Bcep1808_1700 putative transcriptional regulator, AsnC family
YP_001339113.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: hch:HCH_03503 FOG: GGDEF domain
YP_001339114.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: cps:CPS_3853 alcohol dehydrogenase, zinc-containing
YP_001339115.1	in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever
YP_001339116.1	KEGG: pha:PSHAa1823 hypothetical protein
YP_001339117.1	TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: pha:PSHAa2041 high-affinity choline transport protein
YP_001339118.1	PFAM: cytochrome B561; KEGG: pmy:Pmen_3234 cytochrome b561
YP_001339119.1	PFAM: Dual specificity protein phosphatase; diacylglycerol kinase catalytic region; SMART: Protein tyrosine phosphatase, catalytic region; KEGG: pha:PSHAb0333 methylglyoxal synthase
YP_001339120.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rpb:RPB_3829 transcriptional regulator, LysR family
YP_001339121.1	PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_4013 hypothetical protein
YP_001339122.1	TIGRFAM: cytidyltransferase-related domain; PFAM: cytidylyltransferase; KEGG: reu:Reut_B4996 hypothetical protein
YP_001339123.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sdn:Sden_1155 radical SAM
YP_001339124.1	KEGG: sit:TM1040_2126 UspA
YP_001339125.1	PFAM: MOFRL domain protein; KEGG: rde:RD1_1981 hydroxypyruvate reductase
YP_001339126.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ret:RHE_CH01024 probable phosphoglycerate dehydrogenase protein
YP_001339127.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: abo:ABO_2371 TonB-dependent receptor protein
YP_001339128.1	PFAM: periplasmic binding protein; KEGG: maq:Maqu_0274 periplasmic binding protein
YP_001339129.1	PFAM: transport system permease protein; KEGG: maq:Maqu_0275 transport system permease protein
YP_001339130.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: maq:Maqu_0276 ABC transporter related
YP_001339131.1	glycosyltransferase; polymerizes glycan strands in the peptidoglycan
YP_001339132.1	KEGG: pin:Ping_2624 hypothetical protein
YP_001339133.1	KEGG: tcx:Tcr_1336 hypothetical protein
YP_001339134.1	KEGG: hne:HNE_2363 hypothetical protein
YP_001339135.1	PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: ppu:PP_2948 transcriptional regulator, GntR family
YP_001339136.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: nmu:Nmul_A2052 protein of unknown function DUF6
YP_001339137.1	PFAM: protein of unknown function DUF1526; KEGG: shn:Shewana3_4223 protein of unknown function DUF1526
YP_001339138.1	KEGG: gme:Gmet_1115 hypothetical protein
YP_001339139.1	PFAM: AraC protein arabinose-binding/dimerisation; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: plu:plu4091 hypothetical protein
YP_001339140.1	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: plu:plu4090 hypothetical protein
YP_001339141.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1999 ABC transporter related
YP_001339142.1	PFAM: regulatory protein MarR; KEGG: bam:Bamb_1998 transcriptional regulator, MarR family
YP_001339144.1	KEGG: hch:HCH_01378 transposase and inactivated derivatives
YP_001339145.1	KEGG: bja:blr2321 hypothetical protein
YP_001339147.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pau:PA14_68290 probable C4-dicarboxylate transporter
YP_001339148.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: mgm:Mmc1_2138 tripartite ATP-independent periplasmic transporter, DctQ component
YP_001339149.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dde:Dde_0754 TRAP-type C4-dicarboxylate transport system periplasmic component-like
YP_001339150.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pde:Pden_4118 transcriptional regulator, LysR family
YP_001339151.1	KEGG: ppr:PBPRC0042 hypothetical protein
YP_001339152.1	PFAM: filamentation induced by cAMP protein Fic; KEGG: dar:Daro_2666 filamentation induced by cAMP protein Fic
YP_001339153.1	PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: sfu:Sfum_2600 transposase IS116/IS110/IS902 family protein
YP_001339156.1	KEGG: vpa:VP0107 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2
YP_001339157.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mav:MAV_1244 glyoxalase family protein
YP_001339158.1	PFAM: Helix-turn-helix type 11 domain protein; KEGG: bja:blr7851 hypothetical protein
YP_001339159.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sat:SYN_01324 response regulator protein with GGDEF domain
YP_001339160.1	TIGRFAM: homoserine kinase; PFAM: aminoglycoside phosphotransferase; KEGG: bbr:BB2102 homoserine kinase
YP_001339161.1	KEGG: csa:Csal_3209 protein of unknown function DUF1007
YP_001339162.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: csa:Csal_2500 lysine exporter protein (LysE/YggA)
YP_001339163.1	KEGG: psp:PSPPH_2905 transcriptional regulatory protein NfxB
YP_001339164.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN3125 multidrug efflux RND membrane fusion protein MexC
YP_001339165.1	TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pst:PSPTO_2592 AcrB/AcrD/AcrF family protein
YP_001339166.1	PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: maq:Maqu_3814 multiple antibiotic resistance (MarC)-related protein
YP_001339167.1	PFAM: high-affinity nickel-transporter; KEGG: bja:bll7754 hypothetical protein
YP_001339168.1	KEGG: pen:PSEEN0072 transcriptional repressor of Zn transport system Zur
YP_001339169.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_0077 zinc ABC transporter, ATP-binding protein
YP_001339170.1	PFAM: ABC-3 protein; KEGG: ppr:PBPRA1053 putative ABC-type Mn2+/Zn2+ transport system, permease component
YP_001339171.1	KEGG: eca:ECA0798 hypothetical protein
YP_001339172.1	PFAM: Ig family protein; Two component regulator propeller; KEGG: eca:ECA0799 putative outer membrane protein
YP_001339173.1	PFAM: outer membrane efflux protein; KEGG: eca:ECA0800 hypothetical protein
YP_001339174.1	KEGG: eca:ECA0801 hypothetical protein
YP_001339175.1	KEGG: eca:ECA0802 hypothetical protein
YP_001339176.1	KEGG: eca:ECA0803 hypothetical protein
YP_001339177.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: eca:ECA0786 two component system sensor kinase
YP_001339178.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: eca:ECA0785 two component system response regulator
YP_001339179.1	PFAM: Flp/Fap pilin component; KEGG: vvy:VV2013 hypothetical protein
YP_001339180.1	PFAM: peptidase A24A prepilin type IV; KEGG: eca:ECA0787 putative membrane protein
YP_001339181.1	PFAM: SAF domain protein; KEGG: eca:ECA0788 hypothetical protein
YP_001339182.1	PFAM: type II and III secretion system protein; KEGG: eca:ECA0789 putative membrane protein
YP_001339183.1	TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; KEGG: eca:ECA0790 putative lipoprotein
YP_001339184.1	PFAM: response regulator receiver; KEGG: eca:ECA0791 hypothetical protein
YP_001339185.1	PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: eca:ECA0792 putative type IV pilus protein
YP_001339186.1	PFAM: type II secretion system protein; KEGG: eca:ECA0793 putative type IV pilus protein
YP_001339187.1	PFAM: type II secretion system protein; KEGG: eca:ECA0794 putative type IV pilus protein
YP_001339188.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: eca:ECA0795 hypothetical protein
YP_001339189.1	KEGG: eca:ECA0796 hypothetical protein
YP_001339190.1	KEGG: eca:ECA0797 hypothetical protein
YP_001339191.1	PFAM: Haem oxygenase; KEGG: nme:NMB1669 iron-starvation protein PigA
YP_001339192.1	KEGG: aci:ACIAD0936 hypothetical protein
YP_001339193.1	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_001339194.1	KEGG: psb:Psyr_0044 transferase hexapeptide repeat
YP_001339195.1	PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: son:SO4699 oligopeptidase A
YP_001339196.1	KEGG: pfo:Pfl_0089 hypothetical protein
YP_001339197.1	KEGG: mgm:Mmc1_1069 hypothetical protein
YP_001339198.1	KEGG: mgm:Mmc1_1068 hypothetical protein
YP_001339199.1	PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: pin:Ping_0305 alpha amylase, catalytic region
YP_001339200.1	KEGG: pat:Patl_2735 hypothetical protein
YP_001339201.1	PFAM: nitroreductase; KEGG: atc:AGR_L_768 hypothetical protein
YP_001339202.1	involved in the import of serine and threonine coupled with the import of sodium
YP_001339203.1	KEGG: csa:Csal_0740 hypothetical protein
YP_001339204.1	PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: rme:Rmet_5002 major facilitator superfamily MFS_1
YP_001339205.1	PFAM: amino acid-binding ACT domain protein; KEGG: psa:PST_3897 glycine cleavage system regulatory protein
YP_001339206.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ilo:IL2190 transcriptional regulator, LysR family
YP_001339207.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ilo:IL2191 predicted permease, DMT superfamily
YP_001339208.1	PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: sbl:Sbal_3872 deoxyribodipyrimidine photolyase-related protein
YP_001339209.1	TIGRFAM: Cryptochrome DASH; PFAM: DNA photolyase FAD-binding; KEGG: vco:VC0395_A1410 RNA-binding cryptochrome Cry1
YP_001339210.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vpa:VPA0794 putative transcriptional regulator, LysR family
YP_001339211.1	PFAM: monooxygenase FAD-binding; KEGG: bch:Bcen2424_4900 monooxygenase, FAD-binding
YP_001339212.1	PFAM: membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG); KEGG: pha:PSHAa1562 hypothetical protein
YP_001339213.1	TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: sdn:Sden_1233 alkylphosphonate utilization operon protein PhnA
YP_001339214.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pmy:Pmen_1353 methyl-accepting chemotaxis sensory transducer
YP_001339215.1	PFAM: Siderophore-interacting protein; KEGG: aci:ACIAD2762 hypothetical protein; putative siderophore-interacting protein
YP_001339216.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: hch:HCH_03822 outer membrane receptor protein, mostly Fe transport
YP_001339217.1	PFAM: major facilitator superfamily MFS_1; KEGG: aci:ACIAD2763 putative transport protein (MFS superfamily)
YP_001339218.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: chu:CHU_3754 transcriptional regulator, AraC family
YP_001339219.1	PFAM: GCN5-related N-acetyltransferase; KEGG: asa:ASA_1326 hypothetical protein
YP_001339220.1	KEGG: abo:ABO_1656 hypothetical protein
YP_001339221.1	PFAM: helix-turn-helix HxlR type; KEGG: reh:H16_B1992 hypothetical protein
YP_001339222.1	KEGG: rru:Rru_A0338 hypothetical protein
YP_001339223.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: rpb:RPB_4387 short-chain dehydrogenase/reductase
YP_001339224.1	TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: plu:plu2280 hypothetical protein
YP_001339225.1	KEGG: gme:Gmet_2961 hypothetical protein
YP_001339226.1	PFAM: protein of unknown function DUF891; KEGG: rbe:RBE_0720 hypothetical protein
YP_001339227.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: asa:ASA_2628 alkyl hydroperoxide reductase subunit F
YP_001339228.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: vpa:VPA1683 alkyl hydroperoxide reductase c22 protein
YP_001339229.1	PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: mgm:Mmc1_3408 response regulator receiver modulated metal dependent phosphohydrolase
YP_001339230.1	TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: son:SO0859 sensory box histidine kinase/response regulator
YP_001339231.1	PFAM: Extracellular ligand-binding receptor; KEGG: rba:RB7306 probable leucine/isoleucine/valine-binding protein precursor
YP_001339232.1	TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: vfi:VF1374 regulator of kinase autophosphorylation inhibitor
YP_001339233.1	PFAM: Allophanate hydrolase subunit 1; KEGG: vfi:VF1375 kinase autophosphorylation inhibitor KipI
YP_001339234.1	PFAM: LamB/YcsF family protein; KEGG: vfi:VF1376 lactam utilization protein LamB
YP_001339235.1	PFAM: Amidase; KEGG: bvi:Bcep1808_4333 amidase
YP_001339236.1	PFAM: protein of unknown function DUF502; KEGG: pat:Patl_3463 protein of unknown function DUF502
YP_001339237.1	PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cvi:CV2851 hypothetical protein
YP_001339238.1	PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: pca:Pcar_0547 conserved OmpA/MotB domain protein
YP_001339239.1	PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; OmpF family protein; KEGG: gsu:GSU0810 OmpA domain protein
YP_001339240.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bam:Bamb_5305 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_001339241.1	PFAM: protein of unknown function UPF0074; Helix-turn-helix type 11 domain protein; KEGG: shn:Shewana3_2538 transcriptional regulator, BadM/Rrf2 family
YP_001339242.1	PFAM: Helix-turn-helix type 11 domain protein; KEGG: mlo:mll3208 transcriptional regulator, (DeoR-family)
YP_001339243.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: asa:ASA_0006 glyoxalase family protein
YP_001339244.1	PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: sit:TM1040_3169 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B
YP_001339247.1	PFAM: Glutathione S-transferase domain; KEGG: ppr:PBPRB1103 putative glutathione S-transferase
YP_001339248.1	PFAM: extracellular solute-binding protein family 1; KEGG: hch:HCH_06973 ABC-type sugar transport system, periplasmic component
YP_001339249.1	KEGG: pfo:Pfl_3631 hypothetical protein
YP_001339250.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_06970 ABC-type sugar transport system, permease component
YP_001339251.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_06969 ABC-type sugar transport system, permease components
YP_001339252.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_06968 ABC-type sugar transport system, ATPase components
YP_001339253.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_06967 ABC-type sugar transport system, ATPase components
YP_001339254.1	PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06966 transcriptional activator of acetoin/glycerol metabolism
YP_001339255.1	PFAM: Endoribonuclease L-PSP; KEGG: hch:HCH_02009 putative translation initiation inhibitor, YjgF family
YP_001339256.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: hch:HCH_02007 transcriptional regulator
YP_001339257.1	KEGG: hch:HCH_03037 hypothetical protein
YP_001339260.1	PFAM: Domain of unknown function DUF1852; KEGG: vpa:VP1992 hypothetical protein
YP_001339261.1	catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate
YP_001339262.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bxe:Bxe_B0402 transcriptional regulator, AraC family
YP_001339263.1	KEGG: atc:AGR_pAT_397 hypothetical protein
YP_001339264.1	PFAM: peptidase M42 family protein; KEGG: sde:Sde_2916 hypothetical protein
YP_001339265.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: aav:Aave_0658 transcriptional regulator, AraC family
YP_001339266.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aav:Aave_0657 TonB-dependent receptor
YP_001339267.1	PFAM: O-methyltransferase family 2; Methyltransferase type 11; Methyltransferase type 12; KEGG: aav:Aave_0656 methyltransferase type 12
YP_001339268.1	PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_0655 major facilitator superfamily MFS_1
YP_001339269.1	KEGG: aeh:Mlg_2455 hypothetical protein
YP_001339270.1	TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; KEGG: sbl:Sbal_3371 methyl-accepting chemotaxis sensory transducer
YP_001339271.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pen:PSEEN0052 hypothetical protein
YP_001339272.1	PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: ent:Ent638_3166 transcriptional regulator, AraC family
YP_001339273.1	TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: ent:Ent638_3165 2-isopropylmalate synthase
YP_001339274.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ilo:IL2065 signaling protein with a GGDEF domain
YP_001339275.1	PFAM: transport system permease protein; KEGG: rde:RD1_3479 putative hemin ABC transport protein, permease component
YP_001339276.1	PFAM: periplasmic binding protein; KEGG: rde:RD1_3480 putative iron ABC transporter, periplasmic binding protein
YP_001339277.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO0998 Fe uptake system permease
YP_001339278.1	TIGRFAM: Transcriptional activator PspF; PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: hch:HCH_05441 psp operon transcription activator PspF (sigma 54-dependent)
YP_001339279.1	TIGRFAM: Phage shock protein A; PFAM: PspA/IM30 family protein; KEGG: hch:HCH_05443 phage shock protein A (IM30), suppresses sigma54-dependent transcription
YP_001339280.1	acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding
YP_001339281.1	PFAM: PspC domain protein; KEGG: asa:ASA_2423 phage shock protein C
YP_001339282.1	PFAM: Di-haem cytochrome c peroxidase; KEGG: ava:Ava_B0145 di-haem cytochrome c peroxidase
YP_001339283.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: shn:Shewana3_0923 methyl-accepting chemotaxis sensory transducer
YP_001339284.1	PFAM: OsmC family protein; KEGG: hch:HCH_01483 predicted redox protein, regulator of disulfide bond formation
YP_001339285.1	PFAM: Glutathione S-transferase domain; KEGG: ava:Ava_3893 glutathione S-transferase-like
YP_001339286.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: she:Shewmr4_0006 transcriptional regulator, LysR family
YP_001339287.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: vpa:VP1370 hypothetical protein
YP_001339288.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rru:Rru_A0143 GCN5-related N-acetyltransferase
YP_001339289.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: bur:Bcep18194_A6312 protein of unknown function DUF6, transmembrane
YP_001339290.1	PFAM: regulatory protein AsnC/Lrp family; KEGG: bpd:BURPS668_0348 transcriptional regulator, AsnC family
YP_001339291.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: slo:Shew_0098 integral membrane sensor signal transduction histidine kinase
YP_001339292.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: saz:Sama_3534 response regulator receiver protein
YP_001339293.1	KEGG: lpl:lp_1539 lipoprotein precursor
YP_001339294.1	PFAM: regulatory protein MarR; KEGG: sfr:Sfri_0803 transcriptional regulator, MarR family protein
YP_001339295.1	PFAM: OsmC family protein; KEGG: sdn:Sden_0377 OsmC-like protein
YP_001339296.1	PFAM: transcriptional coactivator/pterin dehydratase; KEGG: pin:Ping_0706 transcriptional coactivator/pterin dehydratase
YP_001339297.1	KEGG: vco:VC0395_A0339 putative transcriptional regulator
YP_001339298.1	KEGG: hch:HCH_03006 predicted dienelactone hydrolase
YP_001339299.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: asa:ASA_3015 transcriptional regulator, AraC/XylS family
YP_001339300.1	PFAM: protein of unknown function DUF805; KEGG: saz:Sama_2633 conserved hypothetical protein
YP_001339301.1	KEGG: vco:VC0395_0310 hypothetical protein
YP_001339302.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppu:PP_2350 transcriptional regulator, LysR family
YP_001339303.1	PFAM: HPP family protein?; KEGG: tcx:Tcr_1929 HPP
YP_001339304.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: azo:azo3708 dioxygenase-family protein
YP_001339305.1	PFAM: GCN5-related N-acetyltransferase; KEGG: vvu:VV1_2448 probable acetyltransferase
YP_001339306.1	KEGG: vvu:VV1_2472 adenylate kinase
YP_001339308.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ilo:IL1815 acetyltransferase, GNAT family
YP_001339309.1	PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_05438 histone acetyltransferase HPA2/related acetyltransferase
YP_001339310.1	PFAM: class II aldolase/adducin family protein; KEGG: aci:ACIAD3485 hypothetical protein
YP_001339311.1	PFAM: extracellular solute-binding protein family 3; KEGG: bam:Bamb_3990 extracellular solute-binding protein, family 3
YP_001339312.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; ABC transporter related; SMART: AAA ATPase; KEGG: aci:ACIAD3488 putative amino acid transport protein (ABC superfamily, ATP_bind and membrane)
YP_001339313.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2103 transcriptional regulator, LysR family
YP_001339314.1	KEGG: bur:Bcep18194_C6991 flavin-containing monooxygenase FMO
YP_001339315.1	PFAM: Endoribonuclease L-PSP; KEGG: csa:Csal_2388 endoribonuclease L-PSP
YP_001339316.1	PFAM: protein of unknown function DUF1028; KEGG: pae:PA5391 hypothetical protein
YP_001339317.1	catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine
YP_001339318.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA3492 putative amino acid ABC transporter, ATP-binding protein
YP_001339319.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pin:Ping_2430 ABC polar amino acid transporter inner membrane protein
YP_001339320.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pin:Ping_2431 ABC polar amino acid transporter inner membrane protein
YP_001339321.1	PFAM: extracellular solute-binding protein family 3; KEGG: eca:ECA3495 putative amino acid ABC transporter, substrate binding protein
YP_001339322.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pat:Patl_2057 transcriptional regulator, RpiR family
YP_001339323.1	PFAM: Amidase; KEGG: pat:Patl_2055 amidase
YP_001339324.1	PFAM: gamma-glutamyltranspeptidase; KEGG: pat:Patl_2054 gamma-glutamyltransferase
YP_001339325.1	PFAM: protein of unknown function DUF81; KEGG: pha:PSHAa1469 hypothetical protein
YP_001339326.1	PFAM: aminotransferase class V; KEGG: pat:Patl_2052 aminotransferase, class V
YP_001339327.1	allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide
YP_001339328.1	PFAM: protein of unknown function DUF861 cupin_3; KEGG: fjo:Fjoh_4182 hypothetical protein
YP_001339329.1	PFAM: chemotaxis sensory transducer; KEGG: shn:Shewana3_0970 methyl-accepting chemotaxis sensory transducer
YP_001339330.1	PFAM: amino acid permease-associated region; KEGG: cps:CPS_2040 amino acid permease family protein
YP_001339331.1	PFAM: FAD dependent oxidoreductase; KEGG: vvy:VV1566 hypothetical protein
YP_001339332.1	PFAM: Endoribonuclease L-PSP; KEGG: vvy:VV1565 putative translation initiation inhibitor
YP_001339333.1	catalyzes the formation of L-proline from L-ornithine
YP_001339334.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: vvy:VV1562 AraC-type DNA-binding domain-containing protein
YP_001339335.1	PFAM: periplasmic binding protein; KEGG: hch:HCH_03455 ABC-type Fe3+-hydroxamate transport system, periplasmic component
YP_001339336.1	PFAM: transport system permease protein; KEGG: hch:HCH_03456 ABC-type Fe3+-siderophore transport system, permease component
YP_001339337.1	PFAM: transport system permease protein; ABC-3 protein; KEGG: hch:HCH_03457 ABC-type enterobactin transport system, permease component
YP_001339338.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: btl:BALH_0556 iron(III) dicitrate ABC transporter, ATP-binding protein
YP_001339339.1	KEGG: psb:Psyr_2594 unknown conserved protein in bacilli
YP_001339340.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: hch:HCH_03460 outer membrane receptor protein, mostly Fe transport
YP_001339341.1	PFAM: polysaccharide deacetylase; KEGG: reu:Reut_A2437 polysaccharide deacetylase
YP_001339342.1	PFAM: Asp/Glu racemase; KEGG: psb:Psyr_3529 Asp/Glu racemase
YP_001339343.1	PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: psp:PSPPH_3471 transcriptional regulator, GntR family
YP_001339344.1	PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: aci:ACIAD2247 putative permease
YP_001339345.1	PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: aav:Aave_3331 transcriptional regulator, IclR family
YP_001339346.1	KEGG: ppu:PP_3464 hypothetical protein
YP_001339347.1	TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; KEGG: pin:Ping_0278 ethanolamine transproter
YP_001339348.1	catalyzes the formation of acetaldehyde from ethanolamine
YP_001339349.1	PFAM: Ethanolamine ammonia lyase large subunit; KEGG: pat:Patl_1427 ethanolamine ammonia lyase large subunit
YP_001339350.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rfr:Rfer_0584 transcriptional regulator, AraC family
YP_001339351.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mag:amb0848 response regulator
YP_001339352.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Diverse 7TM receptor extracellular region 2; KEGG: har:HEAR0395 hypothetical protein; putative membrane protein
YP_001339353.1	TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; GLUG domain protein; KEGG: mgm:Mmc1_2695 filamentous haemagglutinin family outer membrane protein
YP_001339354.1	PFAM: Polypeptide-transport-associated domain protein ShlB-type; KEGG: pde:Pden_2460 polypeptide-transport-associated domain protein, ShlB-type
YP_001339355.1	PFAM: Invasion associated locus B family protein; KEGG: bja:bll1169 hypothetical protein
YP_001339356.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_B1973 transcriptional regulator, LysR family
YP_001339357.1	PFAM: protein of unknown function DUF606; KEGG: bur:Bcep18194_B1974 protein of unknown function DUF606
YP_001339358.1	KEGG: rsh:Rsph17029_3535 hypothetical protein
YP_001339359.1	KEGG: pub:SAR11_0691 hypothetical protein
YP_001339360.1	PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO3203 phosphinothricin acetyltransferase
YP_001339361.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: sdn:Sden_0646 protein of unknown function DUF6, transmembrane
YP_001339362.1	KEGG: acb:A1S_0743 hypothetical protein
YP_001339363.1	KEGG: ret:RHE_CH01067 hypothetical protein
YP_001339364.1	PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO3203 phosphinothricin acetyltransferase
YP_001339365.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_2084 transcriptional regulator, LysR family
YP_001339366.1	PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: pol:Bpro_3576 altronate dehydratase
YP_001339367.1	TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: reu:Reut_B4277 succinic semialdehyde dehydrogenase
YP_001339368.1	TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase; KEGG: rso:RSp1613 probable 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase protein
YP_001339369.1	PFAM: Uncharacterized protein UPF0065; KEGG: ecv:APECO1_2627 hypothetical protein
YP_001339371.1	PFAM: protein of unknown function DUF112 transmembrane; KEGG: rsh:Rsph17029_3054 protein of unknown function DUF112, transmembrane
YP_001339372.1	PFAM: N-acetyltransferase; KEGG: hch:HCH_05574 arylamine N-acetyltransferase
YP_001339373.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: hch:HCH_05575 permease of the drug/metabolite transporter (DMT) superfamily
YP_001339374.1	PFAM: cyclic nucleotide-binding; KEGG: hch:HCH_05578 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase
YP_001339375.1	catalyzes the formation of 5-alpha-androstane-3,17-dione from androsterone; Acts on other 3-alpha-hydroxysteroids and on 9-, 11- and 15-hydroxyprostaglandin.
YP_001339376.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; 4-vinyl reductase 4VR; Activator of aromatic catabolism; SMART: AAA ATPase; KEGG: psb:Psyr_2735 helix-turn-helix, fis-type
YP_001339377.1	PFAM: aldehyde dehydrogenase; KEGG: rso:RS05194 putative benzaldehyde dehydrogenase oxidoreductase protein
YP_001339378.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: csa:Csal_0338 transcriptional regulator, LysR family
YP_001339379.1	extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway
YP_001339380.1	PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: nar:Saro_2812 protocatechuate 4,5-dioxygenase
YP_001339381.1	PFAM: alpha/beta hydrolase fold; KEGG: xac:XAC0874 hydrolase
YP_001339382.1	PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: nar:Saro_2408 hypothetical protein
YP_001339383.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: csa:Csal_0332 TRAP dicarboxylate transporter-DctP subunit
YP_001339384.1	KEGG: csa:Csal_0333 hypothetical protein
YP_001339385.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: csa:Csal_0334 TRAP dicarboxylate transporter-DctM subunit
YP_001339386.1	PFAM: DSBA oxidoreductase; KEGG: pst:PSPTO_4177 2-hydroxychromene-2-carboxylate isomerase family protein
YP_001339387.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mll7191 putative oxidoreductase
YP_001339388.1	TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: bte:BTH_II2120 succinate-semialdehyde dehydrogenase
YP_001339389.1	catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate
YP_001339390.1	PFAM: HpcH/HpaI aldolase; KEGG: mpt:Mpe_A0189 2-dehydro-3-deoxyglucarate aldolase
YP_001339391.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pat:Patl_2862 tripartite ATP-independent periplasmic transporter, DctQ component
YP_001339392.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pat:Patl_2863 TRAP dicarboxylate transporter, DctM subunit
YP_001339393.1	PFAM: protein of unknown function DUF81; KEGG: reu:Reut_B3771 protein of unknown function DUF81
YP_001339394.1	PFAM: regulatory protein TetR; KEGG: sma:SAV669 TetR-family transcriptional regulator
YP_001339395.1	PFAM: aldo/keto reductase; KEGG: bxe:Bxe_B0085 putative norsolorinic acid reductase
YP_001339396.1	PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: pat:Patl_2860 transcriptional regulator, GntR family
YP_001339397.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sit:TM1040_3357 TRAP dicarboxylate transporter-DctP subunit
YP_001339398.1	PFAM: Peptidoglycan-binding LysM; KEGG: vpa:VPA1263 hypothetical protein
YP_001339406.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dvl:Dvul_0075 transcriptional regulator, LysR family
YP_001339407.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: eli:ELI_03715 myo-inositol-2-dehydrogenase
YP_001339408.1	PFAM: Auxin Efflux Carrier; KEGG: maq:Maqu_1182 auxin efflux carrier
YP_001339409.1	PFAM: 2OG-Fe(II) oxygenase; KEGG: ppr:PBPRB0800 putative oxidoreductase iron/ascorbatefamily
YP_001339410.1	PFAM: protein of unknown function DUF179; KEGG: maq:Maqu_3764 protein of unknown function DUF179
YP_001339411.1	PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: aha:AHA_3131 hypothetical protein
YP_001339412.1	PFAM: phosphoribosyltransferase; KEGG: pau:PA14_05270 transcriptional regulator PyrR
YP_001339413.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_001339414.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_001339415.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mfa:Mfla_1183 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
YP_001339416.1	PFAM: alanine racemase domain protein; KEGG: eca:ECA3627 putative alanine racemase
YP_001339417.1	TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: hha:Hhal_0946 pyrroline-5-carboxylate reductase
YP_001339418.1	PFAM: protein of unknown function YGGT; KEGG: psa:PST_3968 YGGT family protein
YP_001339419.1	TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain; PFAM: cytidylyltransferase; KEGG: pau:PA14_04760 phosphopantetheine adenylyltransferase
YP_001339420.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: hch:HCH_01009 ferredoxin
YP_001339421.1	PFAM: transporter-associated region; sodium/hydrogen exchanger; KEGG: psp:PSPPH_0493 sodium/hydrogen exchanger family protein
YP_001339422.1	PFAM: Ion transport 2 domain protein; KEGG: maq:Maqu_0775 ion transport 2 domain protein
YP_001339423.1	TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: asa:ASA_4202 RNA methyltransferase, TrmH family, group 2
YP_001339425.1	KEGG: ppd:Ppro_0935 hypothetical protein
YP_001339426.1	KEGG: sgl:SG1173 phage integrase
YP_001339428.1	PFAM: regulatory protein LuxR; KEGG: sth:STH26 two-component response regulator variant
YP_001339431.1	PFAM: KilA domain protein; KEGG: ecv:APECO1_2037 hypothetical protein
YP_001339433.1	PFAM: pentapeptide repeat protein; KEGG: tel:tll0709 hypothetical protein
YP_001339434.1	KEGG: hch:HCH_00373 hypothetical protein
YP_001339435.1	KEGG: hch:HCH_00374 hypothetical protein
YP_001339436.1	KEGG: psp:PSPPH_4950 hypothetical protein
YP_001339437.1	KEGG: hch:HCH_06784 hypothetical protein
YP_001339438.1	KEGG: shw:Sputw3181_2464 hypothetical protein
YP_001339440.1	KEGG: pst:PSPTO_4006 tail fiber protein H, putative
YP_001339441.1	KEGG: pst:PSPTO_4007 hypothetical protein
YP_001339442.1	KEGG: hch:HCH_06780 uncharacterized phage Mu protein GP47-like protein
YP_001339443.1	KEGG: hch:HCH_00381 probable phage protein
YP_001339444.1	TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: hch:HCH_06778 phage-related tail protein
YP_001339446.1	KEGG: har:HEAR2275 hypothetical protein; putative membrane protein
YP_001339447.1	KEGG: hch:HCH_06775 hypothetical protein
YP_001339448.1	KEGG: pat:Patl_0704 hypothetical protein
YP_001339449.1	KEGG: pat:Patl_0703 prophage PSPPH06, putative tail tube protein
YP_001339450.1	KEGG: psp:PSPPH_4964 prophage PSPPH06, putative tail sheath protein
YP_001339451.1	KEGG: hch:HCH_00390 probable phage protein
YP_001339452.1	KEGG: hch:HCH_06770 hypothetical protein
YP_001339453.1	KEGG: hch:HCH_00392 probable phage head completeion protein
YP_001339454.1	PFAM: phage small terminase subunit; KEGG: hch:HCH_06767 probable phage small terminase subunit
YP_001339455.1	TIGRFAM: phage major capsid protein, P2 family; PFAM: phage major capsid protein P2; KEGG: hch:HCH_06766 phage major capsid protein, P2 family
YP_001339456.1	KEGG: dvl:Dvul_2766 phage capsid scaffolding
YP_001339457.1	PFAM: protein of unknown function DUF264; putative terminase ATPase subunit; KEGG: hch:HCH_06764 Mu-like prophage FluMu protein GP28
YP_001339458.1	TIGRFAM: phage portal protein, PBSX family; PFAM: phage portal protein; KEGG: hch:HCH_00397 phage portal protein, PBSX family
YP_001339460.1	KEGG: aav:Aave_1721 hypothetical protein
YP_001339463.1	KEGG: pat:Patl_1844 hypothetical protein
YP_001339465.1	KEGG: atu:Atu5029 hypothetical protein
YP_001339466.1	KEGG: pau:PA14_59050 hypothetical protein
YP_001339467.1	KEGG: pca:Pcar_0990 hypothetical protein
YP_001339469.1	PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: pin:Ping_1941 ion transport protein
YP_001339470.1	PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pvi:Cvib_0082 HNH endonuclease
YP_001339471.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; MASE1 domain protein; KEGG: mgm:Mmc1_2953 multi-sensor hybrid histidine kinase
YP_001339473.1	PFAM: extracellular solute-binding protein family 1; KEGG: pin:Ping_2093 ABC glycerol-3-phosphate transporter extracellular solute-binding protein, family 1
YP_001339474.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rme:Rmet_2054 binding-protein-dependent transport systems inner membrane component
YP_001339475.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pin:Ping_2095 sn-glycerol-3-phosphate ABC transporter, binding protein inner membrane component
YP_001339476.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pin:Ping_2096 ABC transporter ATP-binding protein
YP_001339477.1	PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: pin:Ping_2092 glycerophosphodiester phosphodiesterase
YP_001339478.1	PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; regulatory protein DeoR; KEGG: hch:HCH_06963 transcriptional regulator of sugar metabolism
YP_001339479.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; KEGG: ppr:PBPRB1003 hypothetical protein
YP_001339480.1	PFAM: protein of unknown function DUF808; KEGG: aha:AHA_2589 inner membrane protein YedI
YP_001339481.1	PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: atc:AGR_C_1276 hypothetical protein
YP_001339482.1	PFAM: protein of unknown function UPF0052 and CofD; KEGG: mgm:Mmc1_2436 protein of unknown function UPF0052 and CofD
YP_001339483.1	PFAM: response regulator receiver; KEGG: hch:HCH_01662 chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain
YP_001339484.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shm:Shewmr7_3459 diguanylate cyclase
YP_001339485.1	PFAM: protein of unknown function DUF785; KEGG: fjo:Fjoh_2582 alpha-L-glutamate ligase, RimK family
YP_001339486.1	PFAM: Aldose 1-epimerase; KEGG: nmu:Nmul_A1394 aldose 1-epimerase
YP_001339487.1	TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: csa:Csal_3205 exodeoxyribonuclease III
YP_001339488.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_001339489.1	FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly
YP_001339490.1	TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: pau:PA14_70280 acetylglutamate kinase
YP_001339491.1	TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; KEGG: sec:SC3654 deoxyuridinetriphosphatase
YP_001339492.1	TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: pae:PA5320 DNA/pantothenate metabolism flavoprotein
YP_001339493.1	PFAM: DNA repair protein RadC; KEGG: aeh:Mlg_2664 DNA repair protein RadC
YP_001339494.1	PFAM: helix-turn-helix domain protein; KEGG: plu:plu0895 hypothetical protein
YP_001339495.1	PFAM: Integrase catalytic region; KEGG: pae:PA0978 hypothetical protein
YP_001339496.1	PFAM: transposase IS3/IS911 family protein; KEGG: pau:PA14_51620 possible transposase
YP_001339497.1	PFAM: HipA domain protein; KEGG: vvu:VV1_2190 hypothetical protein
YP_001339498.1	required for 70S ribosome assembly
YP_001339499.1	PFAM: ribosomal protein L33; KEGG: csa:Csal_2970 ribosomal protein L33
YP_001339500.1	TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycolase; KEGG: hch:HCH_00567 formamidopyrimidine-DNA glycosylase
YP_001339501.1	PFAM: basic membrane lipoprotein; KEGG: aha:AHA_0219 membrane lipoprotein
YP_001339502.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pin:Ping_1298 ABC transporter ATP-binding protein
YP_001339503.1	PFAM: inner-membrane translocator; KEGG: hch:HCH_02311 ABC-type uncharacterized transport system, permease component
YP_001339504.1	PFAM: inner-membrane translocator; KEGG: pin:Ping_1300 ABC sugar transporter inner membrane translocator
YP_001339505.1	TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; Cytidine and deoxycytidylate deaminase zinc-binding domain protein; KEGG: sme:SMc04124 cytidine deaminase
YP_001339506.1	PFAM: putative ammonia monooxygenase; KEGG: mlo:mlr2782 hypothetical protein
YP_001339507.1	TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: shw:Sputw3181_3077 rare lipoprotein A
YP_001339508.1	PFAM: GCN5-related N-acetyltransferase; KEGG: dar:Daro_2718 GCN5-related N-acetyltransferase:CoA-binding
YP_001339509.1	PFAM: histone deacetylase superfamily; KEGG: pat:Patl_1749 histone deacetylase superfamily
YP_001339510.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: shw:Sputw3181_0533 HAD-superfamily hydrolase, subfamily IA, variant 3
YP_001339511.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: mes:Meso_4508 TRAP dicarboxylate transporter, DctM subunit
YP_001339512.1	KEGG: mes:Meso_3714 tripartite ATP-independent periplasmic transporter, DctQ component
YP_001339513.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rme:Rmet_4846 TRAP dicarboxylate transporter-DctP subunit
YP_001339514.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: reh:H16_B0882 TRAP-type transporter, periplasmic component
YP_001339515.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pol:Bpro_2839 tripartite ATP-independent periplasmic transporter, DctQ component
YP_001339516.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pin:Ping_3544 TRAP dicarboxylate transporter, DctM subunit
YP_001339517.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pst:PSPTO_3056 transcriptional regulator, AraC family
YP_001339518.1	TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shw:Sputw3181_3163 sulfate ABC transporter, ATPase subunit
YP_001339519.1	TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vch:VC0540 sulfate transport system permease protein
YP_001339520.1	TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO3600 sulfate ABC transporter, permease protein
YP_001339521.1	TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: shw:Sputw3181_3160 sulfate ABC transporter, periplasmic sulfate-binding protein
YP_001339522.1	PFAM: FeoA family protein; KEGG: tel:tsl1204 ferrous iron transport protein A
YP_001339523.1	TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: aha:AHA_2743 ferrous iron transport protein B
YP_001339524.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pin:Ping_2916 diguanylate cyclase
YP_001339525.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: pfo:Pfl_1663 hypothetical protein
YP_001339526.1	PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: zmo:ZMO0755 hypothetical protein
YP_001339527.1	PFAM: helix-turn-helix domain protein; KEGG: lpp:lpp0074 hypothetical protein
YP_001339528.1	PFAM: Trp repressor; KEGG: pcr:Pcryo_1922 Trp operon repressor
YP_001339529.1	PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: pcr:Pcryo_1923 anthranilate synthase
YP_001339530.1	TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: pcr:Pcryo_1924 glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase
YP_001339531.1	KEGG: vch:VCA0497 hypothetical protein
YP_001339532.1	KEGG: vch:VCA0498 hypothetical protein
YP_001339533.1	KEGG: pcr:Pcryo_2476 hypothetical protein
YP_001339534.1	PFAM: helix-turn-helix domain protein; KEGG: maq:Maqu_2672 putative transcriptional regulator, XRE family
YP_001339535.1	KEGG: vch:VCA0504 RelB protein
YP_001339536.1	KEGG: bld:BLi01488 hypothetical protein
YP_001339537.1	PFAM: protein of unknown function DUF218; KEGG: shm:Shewmr7_2682 protein of unknown function DUF218
YP_001339538.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bch:Bcen2424_3651 GCN5-related N-acetyltransferase
YP_001339539.1	PFAM: lipolytic protein G-D-S-L family; KEGG: sde:Sde_2497 TonB-like
YP_001339540.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: vch:VC1273 extracellular solute-binding protein, family 7
YP_001339541.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: vch:VC1274 hypothetical protein
YP_001339542.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vvy:VV2107 hypothetical protein
YP_001339543.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; Cache type 2 domain protein; KEGG: vch:VC1276 sensor histidine kinase
YP_001339544.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: vch:VC1320 DNA-binding response regulator
YP_001339545.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: hch:HCH_04119 signal transduction histidine kinase
YP_001339546.1	PFAM: sulfatase; protein of unknown function DUF1705; KEGG: pau:PA14_21210 hypothetical protein
YP_001339547.1	PFAM: diacylglycerol kinase; KEGG: pha:PSHAa2786 diacylglycerol kinase
YP_001339548.1	PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: vvy:VV2105 transcriptional regulator
YP_001339549.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_001339550.1	KEGG: pha:PSHAa2448 endo alpha-1,4 polygalactosaminidase precusor
YP_001339551.1	PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: pin:Ping_1942 stress responsive alpha-beta barrel domain protein
YP_001339552.1	PFAM: ThiJ/PfpI domain protein; KEGG: cps:CPS_0933 ThiJ/PfpI family protein
YP_001339553.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pin:Ping_3351 transcriptional regulator, substrate-binding, LysR family protein
YP_001339554.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_0792 methyl-accepting chemotaxis sensory transducer
YP_001339555.1	PFAM: chemotaxis sensory transducer; KEGG: dar:Daro_2728 chemotaxis sensory transducer
YP_001339557.1	PFAM: isochorismatase hydrolase; KEGG: psp:PSPPH_1848 isochorismatase family protein
YP_001339558.1	PFAM: aminotransferase class I and II; KEGG: pgi:PG1327 aminotransferase, putative
YP_001339559.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: plu:plu4450 iron(III) dicitrate transport ATP-binding protein FecE
YP_001339560.1	Ferric citrate binds FecA and is transported across the outer membrane while transmits a signal across the cytoplasmic membrane protein FecR. FecR transmits a signal across the membrane and activates the cytoplasmic FecI that directs the RNA polymerase to express the fecABCDE operon (which encodes the ferric citrate outer membrane receptor and the ferric citrate ABC transporter), as well as fecIR. FecD is one of two (along with FecC) integral membrane protein components of the iron dicitrate ABC transporter.
YP_001339561.1	PFAM: transport system permease protein; KEGG: ssn:SSON_4461 citrate-dependent iron(III) transport protein, cytosolic
YP_001339562.1	PFAM: periplasmic binding protein; KEGG: plu:plu4447 iron(III) dicitrate-binding periplasmic protein precursor FecB
YP_001339563.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pin:Ping_2929 transcriptional regulator, periplasmic binding protein of LacI family protein
YP_001339564.1	TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; KEGG: pin:Ping_2936 carbohydrate kinase, thermoresistant glucokinase family protein
YP_001339565.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: C4-dicarboxylate anaerobic carrier; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pin:Ping_2935 TRAP dicarboxylate transporter, DctM subunit
YP_001339566.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pin:Ping_2934 tripartite ATP-independent periplasmic transporter, DctQ component
YP_001339567.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pin:Ping_2933 TRAP dicarboxylate transporter-DctP subunit
YP_001339568.1	PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: pin:Ping_0264 signaling protein with a cAMP-binding site and CBS domains
YP_001339569.1	PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: ilo:IL1176 3'-5' exonuclease
YP_001339570.1	PFAM: sodium/glutamate symporter; KEGG: oih:OB0718 hypothetical protein
YP_001339572.1	PFAM: methylenetetrahydrofolate reductase; KEGG: rme:Rmet_2988 methylenetetrahydrofolate reductase
YP_001339573.1	PFAM: metallophosphoesterase; KEGG: hch:HCH_02241 hypothetical protein
YP_001339574.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; KEGG: sfr:Sfri_3527 diguanylate cyclase/phosphodiesterase
YP_001339575.1	PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; Cupin 2 conserved barrel domain protein; KEGG: pat:Patl_3892 transcriptional regulator, AraC family
YP_001339576.1	catalyzes the formation of protocatechuate from 4-hydroxybenzoate
YP_001339577.1	PFAM: SEC-C motif domain protein; KEGG: pha:PSHAb0475 hypothetical protein
YP_001339578.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: csa:Csal_0306 TRAP dicarboxylate transporter-DctP subunit
YP_001339579.1	KEGG: par:Psyc_1964 TRAP-T family transporter, small inner membrane subunit
YP_001339580.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: csa:Csal_0305 TRAP dicarboxylate transporter-DctM subunit
YP_001339582.1	KEGG: hha:Hhal_1832 hypothetical protein
YP_001339583.1	KEGG: hha:Hhal_1831 tetratricopeptide TPR_4
YP_001339584.1	TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB; KEGG: maq:Maqu_3164 protein-export protein SecB
YP_001339585.1	TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: psb:Psyr_4883 glutaredoxin
YP_001339586.1	PFAM: Rhodanese domain protein; KEGG: abo:ABO_2274 rhodanese domain protein, putative
YP_001339587.1	KEGG: aha:AHA_3177 hypothetical protein
YP_001339588.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: hch:HCH_06121 transcriptional regulator
YP_001339589.1	PFAM: aldehyde dehydrogenase; KEGG: sil:SPO0235 aldehyde dehydrogenase family protein
YP_001339590.1	PFAM: FAD dependent oxidoreductase; KEGG: sme:SMc01576 putative oxidoreductase protein
YP_001339591.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rme:Rmet_0983 transcriptional regulator, LysR family
YP_001339592.1	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
YP_001339593.1	PFAM: peptidase M23B; KEGG: hch:HCH_01351 membrane-bound metallopeptidase
YP_001339594.1	TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; KEGG: pau:PA14_67810 putative carboxyl-terminal protease
YP_001339595.1	PFAM: protein of unknown function DUF610 YibQ; KEGG: abo:ABO_2277 hypothetical protein
YP_001339596.1	PFAM: Extracellular ligand-binding receptor; KEGG: pae:PA4913 putative branched-chain amino acid transport system substrate-binding protein
YP_001339597.1	PFAM: inner-membrane translocator; KEGG: pau:PA14_64890 putative permease of ABC branched chain amino acid transporter
YP_001339598.1	PFAM: inner-membrane translocator; KEGG: psp:PSPPH_0592 high-affinity branched-chain amino acid ABC transporter, permease protein BraE
YP_001339599.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_0601 high affinity branched-chain amino acid ABC transporter, ATP-binding protein
YP_001339600.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pau:PA14_64860 putative ranched-chain amino acid ABC transporter, ATP-binding protein
YP_001339601.1	PFAM: SUA5/yciO/yrdC domain; KEGG: aci:ACIAD0208 conserved hypothetical protein; putative Sua5/YciO/YrdC/YwlC family protein
YP_001339602.1	KEGG: sdy:SDY_0181 putative structural protein
YP_001339603.1	TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pau:PA14_67680 two-component response regulator NtrC
YP_001339604.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: pau:PA14_67670 two-component sensor NtrB
YP_001339605.1	TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: sde:Sde_0502 glutamate--ammonia ligase
YP_001339606.1	Required for the synthesis of the thiazole moiety
YP_001339607.1	TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: sde:Sde_0511 regulatory protein TypA
YP_001339608.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine
YP_001339609.1	PFAM: Pectinesterase; KEGG: eca:ECA3252 pectin acetylesterase
YP_001339610.1	TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: csa:Csal_0591 sec-independent protein translocase TatC
YP_001339611.1	TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: csa:Csal_0592 twin-arginine translocation protein TatB
YP_001339612.1	TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: csa:Csal_0593 twin-arginine translocation protein, TatA/E family
YP_001339613.1	PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: pfl:PFL_0423 phosphoribosyl-ATP pyrophosphohydrolase
YP_001339614.1	TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: hch:HCH_01080 2-polyprenylphenol 6-hydroxylase
YP_001339615.1	TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: vfi:VF0046 ubiquinone/menaquinone biosynthesis methyltransferase UbiE
YP_001339616.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: hch:HCH_00302 response regulator containing a CheY-like receiver domain and a GGDEF domain
YP_001339617.1	PFAM: DSBA oxidoreductase; KEGG: hch:HCH_01016 thiol-disulfide isomerase and thioredoxins
YP_001339618.1	PFAM: GTP-binding protein HSR1-related; KEGG: abo:ABO_2652 GTP-binding protein
YP_001339619.1	TIGRFAM: glutamate--cysteine ligase; KEGG: hch:HCH_06422 glutamate--cysteine ligase
YP_001339620.1	TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; KEGG: abo:ABO_2278 imidazoleglycerol phosphate synthase
YP_001339621.1	TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; KEGG: pen:PSEEN5194 imidazole glycerol phosphate synthetase, glutamine amidotransferase subunit
YP_001339622.1	PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: pau:PA14_67930 imidazoleglycerol-phosphate dehydratase
YP_001339623.1	PFAM: AsmA family protein; KEGG: pen:PSEEN5198 AsmA protein
YP_001339624.1	TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: tcx:Tcr_0120 A/G-specific adenine glycosylase
YP_001339625.1	TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: sdn:Sden_3160 chromate transporter
YP_001339626.1	PFAM: Integrase catalytic region; KEGG: pae:PA0978 hypothetical protein
YP_001339627.1	PFAM: transposase IS3/IS911 family protein; KEGG: pau:PA14_51620 possible transposase
YP_001339628.1	PFAM: Fe(II) trafficking protein YggX; KEGG: maq:Maqu_3177 Fe(II) trafficking protein YggX
YP_001339629.1	PFAM: flagellar basal body-associated protein FliL; KEGG: hch:HCH_06420 flagellar basal body-associated protein
YP_001339630.1	PFAM: Disulphide bond formation protein DsbB; KEGG: maq:Maqu_0468 disulphide bond formation protein DsbB
YP_001339631.1	binds specifically to the major sigma factor sigma 70; active in stationary phase
YP_001339632.1	SMART: WD-40 repeat protein; KEGG: sde:Sde_3587 hypothetical protein
YP_001339633.1	PFAM: protein of unknown function DUF423; KEGG: maq:Maqu_3505 protein of unknown function DUF423
YP_001339634.1	TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: putative methyltransferase; KEGG: aha:AHA_3482 tRNA (guanine-N(7)-)-methyltransferase
YP_001339635.1	PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: pmu:PM0872 VicH, DNA-binding protein H-NS homolog
YP_001339636.1	PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: ppr:PBPRA0182 conserved hypothetical protein
YP_001339637.1	PFAM: NAD(P)H dehydrogenase (quinone); KEGG: bur:Bcep18194_A3615 (acyl-carrier protein) phosphodiesterase
YP_001339638.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pau:PA14_22470 putative transcriptional regulator, LysR family
YP_001339639.1	PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: vvy:VV1746 hypothetical protein
YP_001339640.1	TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: maq:Maqu_3873 UDP-N-acetylglucosamine pyrophosphorylase
YP_001339641.1	TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: maq:Maqu_3872 glucosamine--fructose-6-phosphate aminotransferase, isomerizing
YP_001339642.1	KEGG: eca:ECA2426 oligogalacturonate lyase
YP_001339643.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2403 binding-protein-dependent transport system, inner membrane component
YP_001339644.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: yps:YPTB2360 putative sugar ABC transporter (permease)
YP_001339645.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: yps:YPTB2361 putative sugar ABC transporter, ATPase subunit
YP_001339646.1	PFAM: extracellular solute-binding protein family 1; KEGG: eca:ECA2406 periplasmic pectic oligomers binding protein
YP_001339647.1	TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vvy:VV0552 dehydrogenase
YP_001339648.1	PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: vpa:VPA0076 putative regulator
YP_001339649.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: msu:MS0567 hypothetical protein
YP_001339650.1	PFAM: Ribose/galactose isomerase; KEGG: msu:MS0564 hypothetical protein
YP_001339651.1	PFAM: regulatory protein LuxR; KEGG: reu:Reut_A1539 regulatory protein, LuxR
YP_001339652.1	PFAM: glycosyl hydrolase BNR repeat-containing protein; KEGG: bam:Bamb_6371 hypothetical protein
YP_001339653.1	PFAM: TPR repeat-containing protein; KEGG: dps:DP2106 hypothetical protein
YP_001339654.1	PFAM: outer membrane efflux protein; KEGG: dps:DP2107 hypothetical protein
YP_001339655.1	PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pin:Ping_2844 ABC transporter ATP-binding protein
YP_001339656.1	TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: dps:DP2109 related to secretion proteins
YP_001339657.1	PFAM: protein of unknown function DUF1568; KEGG: psp:PSPPH_4464 hypothetical protein
YP_001339658.1	PFAM: protein of unknown function DUF940 membrane lipoprotein putative; KEGG: vpa:VP0215 putative OtnG protein
YP_001339659.1	KEGG: vfi:VF0158 hypothetical protein
YP_001339660.1	KEGG: vpa:VP0217 putative regulator
YP_001339661.1	KEGG: pol:Bpro_1435 hypothetical protein
YP_001339662.1	KEGG: pin:Ping_0762 hypothetical protein
YP_001339663.1	PFAM: polysaccharide export protein; KEGG: pin:Ping_0763 polysaccharide export protein
YP_001339664.1	PFAM: lipopolysaccharide biosynthesis protein; KEGG: son:SO3191 chain length determinant protein
YP_001339665.1	PFAM: protein of unknown function DUF1568; KEGG: hch:HCH_03270 transposase and inactivated derivatives
YP_001339666.1	PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: maq:Maqu_2610 beta-lactamase domain protein
YP_001339667.1	PFAM: regulatory protein MarR; KEGG: lbl:LBL_1164 transcriptional regulator
YP_001339668.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sfr:Sfri_1374 NAD-dependent epimerase/dehydratase
YP_001339669.1	PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: sfr:Sfri_1373 UDP-glucose 6-dehydrogenase
YP_001339670.1	PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: pha:PSHAa0466 UDP-N-acetyl glucosamine-2-epimerase
YP_001339671.1	catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid
YP_001339673.1	PFAM: polysaccharide biosynthesis protein; KEGG: aba:Acid345_0837 polysaccharide biosynthesis protein
YP_001339674.1	PFAM: glycosyl transferase group 1; KEGG: vvy:VV0348 hypothetical protein
YP_001339675.1	KEGG: gka:GK2004 poly-gamma-glutamate biosynthesis (capsule formation)
YP_001339676.1	KEGG: cpf:CPF_0472 putative CapK protein
YP_001339677.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: vvy:VV0357 putatve zinc-binding dehydrogenase
YP_001339678.1	PFAM: Heparinase II/III family protein; KEGG: pau:PA14_23430 putative heparinase
YP_001339679.1	PFAM: glycosyl transferase group 1; KEGG: pau:PA14_23440 putative group 1 glycosyl transferase
YP_001339680.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cps:CPS_0589 sugar epimerase family protein
YP_001339681.1	PFAM: sugar transferase; KEGG: ilo:IL0563 sugar transferase
YP_001339682.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; CoA-binding domain protein; polysaccharide biosynthesis protein CapD; KEGG: vvu:VV1_0775 predicted nucleoside-diphosphate sugar epimerase
YP_001339683.1	KEGG: vvy:VV0261 hypothetical protein
YP_001339684.1	TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: vvy:VV3026 UDP-glucose 4-epimerase
YP_001339685.1	KEGG: aeh:Mlg_0863 DNA polymerase, beta domain protein region
YP_001339686.1	KEGG: hha:Hhal_0745 hypothetical protein
YP_001339687.1	KEGG: ilo:IL0619.1 Il-IS_3, transposase
YP_001339688.1	TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; KEGG: maq:Maqu_0794 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
YP_001339689.1	PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: saz:Sama_2260 UDP-glucose/GDP-mannose dehydrogenase
YP_001339690.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: msu:MS1500 MviM protein
YP_001339691.1	KEGG: acb:A1S_0054 WbbJ protein
YP_001339692.1	PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: pmy:Pmen_1860 DegT/DnrJ/EryC1/StrS aminotransferase
YP_001339693.1	KEGG: slo:Shew_1402 glucose-1-phosphate thymidylyltransferase
YP_001339694.1	catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis
YP_001339695.1	KEGG: azo:azo2679 conserved hypothetical protein, possibly an acyltransferase
YP_001339696.1	KEGG: rle:RL0798 hypothetical protein
YP_001339697.1	PFAM: Phytanoyl-CoA dioxygenase; KEGG: rle:RL0802 putative deoxygenase
YP_001339698.1	PFAM: WbqC-like family protein; KEGG: neu:NE2176 hypothetical protein
YP_001339699.1	catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis
YP_001339700.1	PFAM: acyltransferase 3; KEGG: pen:PSEEN3380 acetyltransferase Act
YP_001339701.1	PFAM: polysaccharide biosynthesis protein; KEGG: sde:Sde_2124 hypothetical protein
YP_001339702.1	PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: tdn:Tmden_1418 UDP-N-acetylglucosamine 2-epimerase
YP_001339703.1	KEGG: pcr:Pcryo_0623 hypothetical protein
YP_001339704.1	TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pat:Patl_2132 dTDP-glucose 4,6-dehydratase
YP_001339705.1	TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pat:Patl_2131 glucose-1-phosphate thymidylyltransferase
YP_001339706.1	TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; KEGG: eca:ECA1441 dTDP-6-deoxy-D-glucose-3,5 epimerase
YP_001339707.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: eca:ECA1440 dTDP-4-dehydrorhamnose reductase
YP_001339708.1	PFAM: glycosyl transferase family 2; KEGG: eca:ECA1437 O antigen biosynthesis rhamnosyltransferase rfbn
YP_001339709.1	PFAM: sugar transferase; KEGG: tcx:Tcr_1675 undecaprenyl-phosphate galactosephosphotransferase
YP_001339710.1	PFAM: O-antigen polymerase; KEGG: csa:Csal_1694 O-antigen polymerase
YP_001339711.1	PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: csa:Csal_3141 peptidylprolyl isomerase, FKBP-type
YP_001339712.1	PFAM: LmbE family protein; KEGG: pfl:PFL_0521 hypothetical protein
YP_001339713.1	PFAM: glycosyl transferase group 1; KEGG: csa:Csal_1695 glycosyl transferase, group 1
YP_001339714.1	PFAM: protein of unknown function DUF340 membrane; KEGG: aha:AHA_1683 hypothetical protein
YP_001339715.1	KEGG: gsu:GSU1367 hypothetical protein
YP_001339716.1	PFAM: Domain of unknown function DUF1814; KEGG: gsu:GSU1368 hypothetical protein
YP_001339717.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: abo:ABO_1554 MATE efflux family protein, putative
YP_001339718.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_05463 ABC-type hemin transport system, ATPase component
YP_001339719.1	PFAM: transport system permease protein; KEGG: hch:HCH_05462 ABC-type Fe3+-siderophore transport system, permease component
YP_001339720.1	PFAM: periplasmic binding protein; KEGG: hch:HCH_05461 ABC-type hemin transport system, periplasmic component
YP_001339721.1	PFAM: Haemin-degrading family protein; KEGG: pau:PA14_62330 putative hemin degrading factor
YP_001339722.1	TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ppr:PBPRA1535 hypothetical heme receptor
YP_001339723.1	PFAM: protein of unknown function DUF861 cupin_3; KEGG: ppu:PP_4665 hypothetical protein
YP_001339724.1	KEGG: sde:Sde_3607 pilus retraction protein PilT
YP_001339725.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: aav:Aave_2794 TRAP dicarboxylate transporter, DctP subunit
YP_001339726.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: gka:GK1972 transporter
YP_001339727.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: gka:GK1973 transporter
YP_001339728.1	catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate
YP_001339729.1	KEGG: aav:Aave_0753 hypothetical protein
YP_001339730.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppu:PP_2833 transcriptional regulator, LysR family
YP_001339731.1	PFAM: aldehyde dehydrogenase; KEGG: pau:PA14_36050 probable NAD-dependent aldehyde dehydrogenase
YP_001339732.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: yps:YPTB1575 putative oxidoreductase
YP_001339733.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bxe:Bxe_B2956 fumarylacetoacetate hydrolase family protein
YP_001339734.1	TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: rde:RD1_0783 sulfate transporter, permease protein, putative
YP_001339735.1	PFAM: protein of unknown function DUF442; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rde:RD1_0784 hypothetical protein
YP_001339736.1	PFAM: beta-lactamase domain protein; KEGG: nha:Nham_0946 beta-lactamase-like
YP_001339737.1	PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: aeh:Mlg_2043 sigma54 specific transcriptional regulator, fis family
YP_001339738.1	PFAM: PEBP family protein; KEGG: vvy:VVA1422 phospholipid-binding protein
YP_001339739.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: vvy:VVA1423 AraC-type DNA-binding domain-containing protein
YP_001339740.1	PFAM: ABC-2 type transporter; KEGG: shw:Sputw3181_2678 ABC-2 type transporter
YP_001339741.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shn:Shewana3_2749 ABC transporter related
YP_001339742.1	KEGG: shw:Sputw3181_2680 secretion protein HlyD family protein
YP_001339743.1	PFAM: regulatory protein TetR; KEGG: saz:Sama_3590 putative transcriptional regulator, TetR family
YP_001339744.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: vvu:VV2_0356 methyl-accepting chemotaxis protein
YP_001339745.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sde:Sde_1219 peptidoglycan-binding LysM
YP_001339746.1	KEGG: nfa:nfa40860 hypothetical protein
YP_001339747.1	KEGG: hch:HCH_03654 hypothetical protein
YP_001339748.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: saz:Sama_1400 periplasmic binding protein/LacI transcriptional regulator
YP_001339749.1	PFAM: extracellular solute-binding protein family 1; KEGG: rle:RL2796 putative solute-binding component of ABC transporter
YP_001339750.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll3316 permease of ABC sugar transporter
YP_001339751.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL100442 putative permease component of ABC transporter
YP_001339752.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: atc:AGR_L_2946 SN-glycerol-3-phosphate transport ATP-binding protein UgpC
YP_001339753.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: atc:AGR_L_2948 hypothetical protein
YP_001339754.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: atc:AGR_L_2949 hypothetical protein
YP_001339755.1	PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel; KEGG: atc:AGR_L_986 hypothetical protein
YP_001339756.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: pde:Pden_4436 oxidoreductase domain protein
YP_001339757.1	KEGG: abo:ABO_2416 hypothetical protein
YP_001339758.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pha:PSHAb0368 putative GGDEF domain membrane protein
YP_001339759.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pha:PSHAb0368 putative GGDEF domain membrane protein
YP_001339760.1	PFAM: protein of unknown function DUF88; KEGG: csa:Csal_0758 protein of unknown function DUF88
YP_001339761.1	KEGG: tbd:Tbd_1218 probable transmembrane protein
YP_001339763.1	PFAM: amidohydrolase; Amidohydrolase 3; KEGG: vvy:VV3062 cytosine deaminase
YP_001339764.1	PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: mca:MCA2305 metallo-beta-lactamase family protein
YP_001339765.1	TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; KEGG: vfi:VF2339 lysine 2,3-aminomutase
YP_001339766.1	TIGRFAM: translation elongation factor P; PFAM: Elongation factor P/YeiP protein; Elongation factor KOW domain protein; Elongation factor P; KEGG: hch:HCH_05399 translation elongation factor P
YP_001339767.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMa2341 putative LysR-family transcriptional regulator
YP_001339768.1	KEGG: sme:SMa0312 hypothetical protein
YP_001339769.1	KEGG: hne:HNE_0020 hypothetical protein
YP_001339770.1	PFAM: GCN5-related N-acetyltransferase; KEGG: shw:Sputw3181_0681 GCN5-related N-acetyltransferase
YP_001339771.1	PFAM: beta-lactamase; KEGG: nar:Saro_0215 6-aminohexanoate-dimer hydrolase
YP_001339772.1	PFAM: regulatory protein LuxR; KEGG: rso:RS03074 putative transcription regulator protein
YP_001339773.1	PFAM: DoxX family protein; KEGG: pat:Patl_1677 DoxX
YP_001339774.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll6662 ribitol 2-dehydrogenase
YP_001339775.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: hch:HCH_04191 putative NADP-dependent oxidoreductase
YP_001339776.1	PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: cps:CPS_3393 putative aminotransferase
YP_001339777.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: cps:CPS_3391 membrane protein
YP_001339778.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rde:RD1_1363 threonine efflux protein, putative
YP_001339779.1	TIGRFAM: lysyl-tRNA synthetase-related protein GenX; PFAM: tRNA synthetase class II (D K and N); KEGG: pha:PSHAa0475 fold recognizing lysyl-tRNA
YP_001339780.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: hch:HCH_00924 signal transduction histidine kinase regulating C4-dicarboxylate transport system
YP_001339781.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: hch:HCH_00326 sigma 54-dependent transcriptional activator containing CheY-like receiver domain
YP_001339782.1	TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; KEGG: pin:Ping_2396 gamma-glutamyltransferase
YP_001339783.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sit:TM1040_1811 TRAP dicarboxylate transporter-DctM subunit
YP_001339784.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: vpa:VP0911 putative C4-dicarboxylate transport protein DctQ
YP_001339785.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sil:SPO2628 TRAP transporter solute receptor, DctP family
YP_001339786.1	PFAM: protein of unknown function DUF699 ATPase putative; KEGG: aha:AHA_3837 hypothetical protein
YP_001339787.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: vvu:VV1_3142 methyl-accepting chemotaxis protein
YP_001339788.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: shw:Sputw3181_1370 methyl-accepting chemotaxis sensory transducer
YP_001339789.1	functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C
YP_001339790.1	TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase; KEGG: maq:Maqu_1665 2-methylcitrate synthase/citrate synthase II
YP_001339791.1	catalyzes the formation of pyruvate and succinate from 2-methylisocitrate
YP_001339792.1	PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: vvy:VV1528 transcriptional regulator
YP_001339793.1	KEGG: cps:CPS_2780 hypothetical protein
YP_001339794.1	PFAM: regulatory protein AsnC/Lrp family; KEGG: psp:PSPPH_2219 transcriptional regulator, AsnC family
YP_001339795.1	PFAM: Protein of unknown function DUF1826; KEGG: pat:Patl_0300 hypothetical protein
YP_001339796.1	KEGG: pin:Ping_2109 oxidoreductase, short-chain dehydrogenase/reductase family protein
YP_001339797.1	PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: ilo:IL2053 potential redox protein
YP_001339798.1	KEGG: ilo:IL0121 hypothetical protein
YP_001339799.1	Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001339800.1	YiuR; outer membrane siderophore receptor
YP_001339801.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: csa:Csal_2679 transcriptional regulator, LysR family
YP_001339802.1	KEGG: pat:Patl_0737 Zn-dependent hydrolase of the beta-lactamase fold
YP_001339803.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ppr:PBPRB1050 hypothetical protein
YP_001339804.1	KEGG: sit:TM1040_2040 hypothetical protein
YP_001339805.1	KEGG: cps:CPS_1673 hypothetical protein
YP_001339806.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cps:CPS_1672 transcriptional regulator, LysR family
YP_001339807.1	PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: chu:CHU_1731 transcriptional regulator, DeoR family
YP_001339808.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: sdn:Sden_2618 glutathione-dependent formaldehyde-activating, GFA
YP_001339809.1	PFAM: Citrate transporter; Na+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: csa:Csal_1651 Na+/H+ antiporter NhaC
YP_001339810.1	PFAM: GCN5-related N-acetyltransferase; KEGG: shw:Sputw3181_2980 GCN5-related N-acetyltransferase
YP_001339811.1	KEGG: pin:Ping_2315 hypothetical protein
YP_001339812.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pin:Ping_2316 transcriptional regulator, substrate-binding of LysR family protein
YP_001339813.1	KEGG: vch:VCA0458 hypothetical protein
YP_001339814.1	KEGG: abo:ABO_2509 branched-chain amino acid ABC transporter, putative
YP_001339815.1	PFAM: HEAT domain containing protein; inner-membrane translocator; KEGG: pin:Ping_2987 ABC transporter inner-membrane translocator
YP_001339816.1	PFAM: inner-membrane translocator; KEGG: abo:ABO_2511 branched-chain amino acid ABC transporter, permease protein
YP_001339817.1	PFAM: ABC transporter related; KEGG: pin:Ping_2989 ABC transporter ATP-binding protein
YP_001339818.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pin:Ping_2990 ABC transporter ATP-binding protein
YP_001339819.1	PFAM: Urease accessory protein UreD; KEGG: pin:Ping_2991 urease accessory protein UreD
YP_001339820.1	UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter
YP_001339821.1	TIGRFAM: urease, beta subunit; PFAM: Urease beta subunit; KEGG: rpa:RPA3662 urease beta subunit
YP_001339822.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits
YP_001339823.1	involved in the assembly of the urease metallocenter; possible nickel donor
YP_001339824.1	PFAM: Urease accessory protein UreF; KEGG: sde:Sde_0223 urease accessory protein UreF
YP_001339825.1	TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: hch:HCH_04526 urease accessory protein UreG
YP_001339826.1	PFAM: HupE/UreJ protein; KEGG: rle:pRL90274 putative transmembrane hydrogenase-related protein
YP_001339827.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: maq:Maqu_3868 integral membrane sensor hybrid histidine kinase
YP_001339828.1	PFAM: regulatory protein LuxR; response regulator receiver; KEGG: abo:ABO_1987 DNA-binding response regulator, LuxR family
YP_001339829.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: nmu:Nmul_A1739 transcriptional regulator, LysR family
YP_001339830.1	TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azo:azo1333 putative sulfate transport ATP-binding protein
YP_001339831.1	TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azo:azo1334 putative sulfate transport system permease protein
YP_001339832.1	TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azo:azo1335 sulfate transport system permease protein probably
YP_001339833.1	TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: rru:Rru_A3400 thiosulphate-binding protein
YP_001339834.1	PFAM: GCN5-related N-acetyltransferase; KEGG: eca:ECA3329 putative acetyltransferase
YP_001339835.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: shn:Shewana3_0895 methyl-accepting chemotaxis sensory transducer
YP_001339836.1	PFAM: Citrate transporter; Dicarboxylate carrier MatC domain protein; KEGG: cje:Cj0555 putative integral memnbrane protein
YP_001339837.1	PFAM: amidohydrolase 2; KEGG: rso:RS05190 probable hydrolase transmembrane protein
YP_001339838.1	PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: rso:RS03035 probable transcription regulator protein
YP_001339839.1	KEGG: bbr:BB1388 hypothetical protein
YP_001339840.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: shn:Shewana3_3975 transcriptional regulator, AraC family
YP_001339841.1	PFAM: isochorismatase hydrolase; KEGG: vpa:VP1994 putative isochorismatase-related protein
YP_001339842.1	PFAM: regulatory protein LysR; TOBE domain protein; KEGG: plt:Plut_1543 molybdenum-binding protein-like
YP_001339843.1	TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; KEGG: tbd:Tbd_1285 molybdate ABC transporter, ATP-binding protein
YP_001339844.1	TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azo:azo3838 putative molybdenum transport system permease protein
YP_001339845.1	TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: aav:Aave_2028 molybdenum ABC transporter, periplasmic molybdate-binding protein
YP_001339846.1	PFAM: histidine kinase HAMP region domain protein; SMART: metal-dependent phosphohydrolase HD region; KEGG: vvy:VV1527 hypothetical protein
YP_001339847.1	PFAM: sodium:dicarboxylate symporter; KEGG: ppr:PBPRA2381 putative sodium/dicarboxylate symporter
YP_001339848.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Nitrate and nitrite sensing domain protein; KEGG: vfi:VF0698 methyl-accepting chemotaxis protein
YP_001339849.1	KEGG: pat:Patl_1925 hypothetical protein
YP_001339850.1	KEGG: pat:Patl_1925 hypothetical protein
YP_001339851.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: tcx:Tcr_0779 DEAD/DEAH box helicase-like
YP_001339852.1	PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: sde:Sde_3097 hypothetical protein
YP_001339853.1	PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: sde:Sde_3098 protein of unknown function DUF403
YP_001339854.1	PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: sde:Sde_3099 transglutaminase-like superfamily domain protein
YP_001339855.1	PFAM: protein of unknown function DUF403; KEGG: sde:Sde_3100 hypothetical protein
YP_001339856.1	PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: sde:Sde_3101 hypothetical protein
YP_001339857.1	PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: pat:Patl_3662 monooxygenase, FAD-binding
YP_001339858.1	PFAM: Pyrrolo-quinoline quinone; KEGG: ilo:IL0790 glucose dehydrogenase
YP_001339859.1	PFAM: Na+ antiporter NhaC; KEGG: hch:HCH_01694 Na+/H+ antiporter
YP_001339860.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: hch:HCH_02049 permease of the drug/metabolite transporter (DMT) superfamily
YP_001339861.1	PFAM: regulatory protein TetR; KEGG: mpt:Mpe_A2962 transcriptional regulator, TetR family
YP_001339862.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ppd:Ppro_0331 efflux transporter, RND family, MFP subunit
YP_001339863.1	TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: yen:YE0444 multidrug efflux protein
YP_001339864.1	TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB0945 binding-protein-dependent transport system permease protein
YP_001339865.1	TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB0946 binding-protein-dependent transport systems inner membrane component
YP_001339866.1	TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvl:Dvul_1231 phosphonate ABC transporter, ATPase subunit
YP_001339867.1	TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: dvl:Dvul_1230 phosphonate ABC transporter, periplasmic phosphonate-binding protein
YP_001339868.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: dar:Daro_0477 helix-turn-helix, fis-type
YP_001339869.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: atc:AGR_C_174 probable two-component sensor
YP_001339870.1	PFAM: nitroreductase; KEGG: shm:Shewmr7_2374 nitroreductase
YP_001339871.1	PFAM: 4'-phosphopantetheinyl transferase; KEGG: gvi:glr2851 hetI protein homolog
YP_001339872.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: abo:ABO_2091 ferrioxamine receptor precursor
YP_001339873.1	TIGRFAM: cyclic peptide transporter; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: abo:ABO_2095 ABC export system,permease/ATP-binding protein
YP_001339874.1	part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome
YP_001339875.1	PFAM: periplasmic binding protein; KEGG: csa:Csal_1050 periplasmic binding protein
YP_001339876.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csa:Csal_1051 ABC transporter related
YP_001339877.1	stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein
YP_001339878.1	TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: pfl:PFL_5610 HesB/YadR/YfhF family protein
YP_001339879.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bur:Bcep18194_B3051 periplasmic sensor signal transduction histidine kinase
YP_001339880.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RS05454 probable two component response regulator transcription regulator protein
YP_001339881.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RSp0313 probable multidrug efflux system protein
YP_001339882.1	TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rso:RSp0312 probable multidrug efflux system transmembrane protein
YP_001339884.1	PFAM: protein of unknown function UPF0044; KEGG: csa:Csal_3083 protein of unknown function UPF0044
YP_001339885.1	PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: csa:Csal_3082 ribosomal RNA methyltransferase RrmJ/FtsJ
YP_001339886.1	KEGG: pst:PSPTO_4497 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase
YP_001339887.1	TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; KEGG: pae:PA4750 dihydropteroate synthase
YP_001339888.1	TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: hch:HCH_01234 phosphoglucosamine mutase
YP_001339889.1	PFAM: triosephosphate isomerase; KEGG: tcx:Tcr_0815 triosephosphate isomerase
YP_001339890.1	TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: maq:Maqu_3351 preprotein translocase, SecG subunit
YP_001339891.1	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins
YP_001339892.1	TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; NusA domain protein; SMART: KH domain protein; KEGG: pau:PA14_62770 N utilization substance protein A
YP_001339893.1	TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; Initiation factor 2 associated domain protein ; Miro domain protein; KEGG: pau:PA14_62760 translation initiation factor IF-2
YP_001339894.1	PFAM: ribosome-binding factor A; KEGG: csa:Csal_3073 ribosome-binding factor A
YP_001339895.1	TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase B; KEGG: saz:Sama_0963 pseudouridylate synthase
YP_001339896.1	PFAM: ribosomal protein S15; KEGG: hch:HCH_01243 ribosomal protein S15
YP_001339897.1	PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; SMART: KH domain protein; KEGG: hch:HCH_01244 polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)
YP_001339898.1	KEGG: tcx:Tcr_0516 hypothetical protein
YP_001339899.1	PFAM: thioesterase superfamily protein; KEGG: saz:Sama_2075 thioesterase superfamily
YP_001339900.1	KEGG: vch:VC1541 hypothetical protein
YP_001339902.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: hch:HCH_04633 response regulator containing a CheY-like receiver domain and a GGDEF domain
YP_001339903.1	TIGRFAM: glucokinase; PFAM: Glucokinase; KEGG: psp:PSPPH_1178 glucokinase
YP_001339904.1	TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; KEGG: pat:Patl_0970 glucose-6-phosphate 1-dehydrogenase
YP_001339905.1	TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: yps:YPTB2050 KHG/KDPG aldolase
YP_001339906.1	PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: pha:PSHAa2622 PhoH-like protein
YP_001339907.1	TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma-70; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 non-essential domain protein; sigma-70 region 1.2; KEGG: maq:Maqu_0658 RNA polymerase, sigma 70 subunit, RpoD family
YP_001339908.1	TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase DnaG DnaB-binding; DNA primase catalytic core domain; SMART: Toprim sub domain protein; KEGG: pfo:Pfl_5148 DNA primase
YP_001339909.1	PFAM: GatB/Yqey domain protein; KEGG: sde:Sde_0718 hypothetical protein
YP_001339910.1	PFAM: ribosomal protein S21; KEGG: sde:Sde_0719 glutamine amidotransferase of anthranilate synthase
YP_001339911.1	TIGRFAM: putative metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease; KEGG: maq:Maqu_0661 putative metalloendopeptidase, glycoprotease family
YP_001339912.1	TIGRFAM: dihydroneopterin aldolase; KEGG: xcb:XC_3887 dihydroneopterin aldolase
YP_001339913.1	PFAM: Polynucleotide adenylyltransferase region; KEGG: hch:HCH_01366 tRNA nucleotidyltransferase
YP_001339914.1	PFAM: Rhodanese domain protein; KEGG: eci:UTI89_C3925 thiosulfate sulfurtransferase GlpE
YP_001339915.1	hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP
YP_001339916.1	protein associated with Co2+ and Mg2+ efflux
YP_001339917.1	TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: pae:PA0592 rRNA (adenine-N6,N6)-dimethyltransferase
YP_001339918.1	TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; KEGG: sde:Sde_0738 4-hydroxythreonine-4-phosphate dehydrogenase
YP_001339919.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: hch:HCH_06105 parvulin-like peptidyl-prolyl isomerase
YP_001339920.1	PFAM: Organic solvent tolerance protein; KEGG: pau:PA14_07770 organic solvent tolerance protein OstA precursor
YP_001339921.1	PFAM: heat shock protein DnaJ domain protein; KEGG: nmu:Nmul_A0892 heat shock protein DnaJ-like
YP_001339922.1	KEGG: pfl:PFL_5642 hypothetical protein
YP_001339923.1	PFAM: ribulose-phosphate 3-epimerase; KEGG: pen:PSEEN0442 D-ribulose-5-phosphate 3-epimerase
YP_001339924.1	TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ppu:PP_0416 phosphoglycolate phosphatase
YP_001339925.1	PFAM: MscS Mechanosensitive ion channel; KEGG: hch:HCH_02680 small-conductance mechanosensitive channel
YP_001339926.1	PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: sde:Sde_3911 serine/threonine protein kinase
YP_001339927.1	TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: hch:HCH_06126 anthranilate/para-aminobenzoate synthases component II
YP_001339928.1	TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; KEGG: hch:HCH_06127 anthranilate phosphoribosyltransferase
YP_001339929.1	PFAM: Indole-3-glycerol phosphate synthase; KEGG: maq:Maqu_3520 indole-3-glycerol-phosphate synthase
YP_001339930.1	PFAM: OsmC family protein; KEGG: hch:HCH_06134 predicted redox protein, regulator of disulfide bond formation
YP_001339931.1	PFAM: FlgN family protein; KEGG: maq:Maqu_1173 FlgN family protein
YP_001339932.1	PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: sfr:Sfri_1157 anti-sigma-28 factor, FlgM
YP_001339933.1	KEGG: vch:VC2203 flagellar protein, putative
YP_001339934.1	PFAM: response regulator receiver; CheW domain protein; KEGG: pau:PA14_20750 putative chemotaxis signal transduction protein
YP_001339935.1	PFAM: MCP methyltransferase CheR-type; KEGG: pst:PSPTO_1928 chemotaxis protein methyltransferase CheR
YP_001339936.1	PFAM: peptidase M23B; Opacity-associated protein A; KEGG: pst:PSPTO_0607 peptidase, M23/M37 family
YP_001339937.1	TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; KEGG: sde:Sde_1088 tyrosine--tRNA ligase
YP_001339938.1	PFAM: protein of unknown function UPF0057; KEGG: pat:Patl_4140 protein of unknown function UPF0057
YP_001339939.1	PFAM: major facilitator superfamily MFS_1; KEGG: hha:Hhal_0364 major facilitator superfamily MFS_1
YP_001339940.1	PFAM: regulatory protein AsnC/Lrp family; KEGG: cvi:CV3181 transcription regulator protein
YP_001339941.1	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway
YP_001339942.1	TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: she:Shewmr4_2975 phosphoribosylaminoimidazole carboxylase, catalytic subunit
YP_001339943.1	catalyzes the formation of methylglyoxal from glycerone phosphate
YP_001339944.1	TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; KEGG: ecv:APECO1_904 pyruvate kinase II
YP_001339945.1	TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: saz:Sama_1808 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)
YP_001339946.1	catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate
YP_001339947.1	TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+ symporter; KEGG: vfi:VFA0829 sodium/proline symporter
YP_001339948.1	Represses the expression of the zwf, eda, glp and gap
YP_001339949.1	PFAM: Choline/ethanolamine kinase; aminoglycoside phosphotransferase; KEGG: ret:RHE_CH00087 putative choline kinase protein
YP_001339950.1	TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; KEGG: maq:Maqu_2269 uracil-DNA glycosylase
YP_001339951.1	PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: pfl:PFL_1444 aminomethyl transferase, putative
YP_001339952.1	PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; KEGG: pat:Patl_2248 response regulator receiver modulated metal dependent phosphohydrolase
YP_001339953.1	KEGG: sdn:Sden_3722 ATP-binding region, ATPase-like protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; MHYT domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_001339954.1	TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: ppr:PBPRA0467 putative xylulose kinase
YP_001339955.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: hch:HCH_01299 AraC-type DNA-binding domain-containing protein
YP_001339956.1	PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: hch:HCH_01298 mannitol-1-phosphate/altronate dehydrogenase
YP_001339957.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: hch:HCH_01297 ABC-type sugar transport system, ATPase components
YP_001339958.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_01296 ABC-type sugar transport system, permease component
YP_001339959.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_01295 ABC-type sugar transport system, permease components
YP_001339960.1	PFAM: extracellular solute-binding protein family 1; KEGG: hch:HCH_01294 ABC-type sugar transport system, periplasmic component
YP_001339961.1	PFAM: protein of unknown function DUF339; KEGG: hch:HCH_01788 hypothetical protein
YP_001339963.1	TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: hch:HCH_01789 L-aspartate oxidase
YP_001339964.1	TIGRFAM: RNA polymerase sigma-70; RNA polymerase sigma-70 RpoE type; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pfl:PFL_1448 RNA polymerase sigma-H factor AlgT
YP_001339965.1	KEGG: hch:HCH_01791 sigma factor AlgU negative regulatory protein MucA
YP_001339966.1	PFAM: MucB/RseB family protein; KEGG: abo:ABO_1637 negative regulator for alginate biosynthesis
YP_001339967.1	PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: pau:PA14_54400 positive regulator for alginate biosynthesis MucC
YP_001339968.1	TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: pfo:Pfl_1365 peptidase S1C, Do
YP_001339969.1	catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis
YP_001339970.1	catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis
YP_001339971.1	PFAM: adenylate cyclase; KEGG: maq:Maqu_0774 adenylate cyclase
YP_001339972.1	PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: pen:PSEEN5144 glutamine synthetase adenylyltransferase
YP_001339973.1	in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope
YP_001339974.1	TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: lmf:LMOf2365_0806 phenazine biosynthesis protein, PhzF family
YP_001339975.1	TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: hch:HCH_01947 acetylornithine transaminase
YP_001339976.1	PFAM: NAD-glutamate dehydrogenase; KEGG: rxy:Rxyl_2529 NAD-glutamate dehydrogenase
YP_001339977.1	PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pau:PA14_71070 putative transcriptional regulator, AraC family
YP_001339978.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pau:PA14_68060 putative amino acid ABC transporter, ATP-binding protein
YP_001339979.1	PFAM: extracellular solute-binding protein family 3; KEGG: pau:PA14_68070 putative ABC transporter, periplasmic amino acid-binding protein
YP_001339980.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: psb:Psyr_4913 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine
YP_001339981.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: par:Psyc_0298 ABC basic amino acid transporter, inner membrane subunit
YP_001339982.1	PFAM: nitrogen regulatory protein P-II; KEGG: tbd:Tbd_0240 nitrogen regulatory protein P-II (GlnB, GlnK)
YP_001339984.1	TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: ppu:PP_5074 uroporphyrinogen decarboxylase
YP_001339985.1	KEGG: aha:AHA_1913 hypothetical protein
YP_001339986.1	PFAM: NUDIX hydrolase; KEGG: sgl:SG1608 hypothetical protein
YP_001339987.1	catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism
YP_001339988.1	PFAM: periplasmic solute binding protein; KEGG: aha:AHA_3728 zinc ABC transporter, periplasmic zinc-binding protein
YP_001339989.1	TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KEGG: ppu:PP_1806 KpsF/GutQ family protein
YP_001339990.1	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis
YP_001339991.1	TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: rma:Rmag_1043 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family
YP_001339992.1	TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; KEGG: azo:azo1472 probable 3-deoxy-manno-octulosonate cytidylyltransferase
YP_001339993.1	KEGG: hha:Hhal_1892 ThiS, thiamine-biosynthesis
YP_001339994.1	PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: shn:Shewana3_3506 5-formyltetrahydrofolate cyclo-ligase
YP_001339995.1	PFAM: protein of unknown function DUF710; KEGG: pau:PA14_69030 hypothetical protein
YP_001339996.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_001339997.1	TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: azo:azo3348 histidinol-phosphate aminotransferase
YP_001339998.1	PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: aha:AHA_2106 YbaK/prolyl-tRNA synthetase domain protein
YP_001339999.1	KEGG: neu:NE1559 hypothetical protein
YP_001340000.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: csa:Csal_1098 sigma-24 (FecI-like)
YP_001340001.1	KEGG: csa:Csal_1097 hypothetical protein
YP_001340002.1	PFAM: GCN5-related N-acetyltransferase; KEGG: vvu:VV1_2480 putative acetyltransferase
YP_001340003.1	PFAM: protein of unknown function UPF0060; KEGG: noc:Noc_2955 hypothetical protein
YP_001340004.1	KEGG: shw:Sputw3181_0401 hypothetical protein
YP_001340005.1	PFAM: small multidrug resistance protein; KEGG: sat:SYN_01248 quaternary ammonium compound-resistance protein
YP_001340006.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: atc:AGR_pTi_70 probable NocR gene
YP_001340007.1	PFAM: C4-dicarboxylate anaerobic carrier; AbgT putative transporter; Na+ antiporter NhaC; short chain fatty acid transporter; KEGG: sha:SH0200 hypothetical protein
YP_001340008.1	catalyzes the conversion of N-acetyl_L-aspartic acid (NAA) to aspartate and acetate
YP_001340009.1	TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: maq:Maqu_2438 deoxyxylulose-5-phosphate synthase
YP_001340010.1	PFAM: Polyprenyl synthetase; KEGG: sde:Sde_3221 outer membrane lipoprotein LolB
YP_001340011.1	TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: pau:PA14_11570 exodeoxyribonuclease VII small subunit
YP_001340012.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: hch:HCH_05863 flagellar motor component
YP_001340013.1	with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella
YP_001340014.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_001340015.1	PFAM: regulatory protein MarR; transcriptional regulator TrmB; KEGG: maq:Maqu_3333 transcriptional regulator, MarR family
YP_001340016.1	PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: hch:HCH_01735 deoxyribodipyrimidine photolyase
YP_001340017.1	PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: sde:Sde_2713 protein of unknown function DUF523
YP_001340018.1	KEGG: pae:PA4657 hypothetical protein
YP_001340019.1	PFAM: regulatory protein MerR; KEGG: pfo:Pfl_0894 transcriptional regulator, MerR family
YP_001340020.1	KEGG: pin:Ping_0309 membrane protein-like protein
YP_001340021.1	PFAM: sodium:neurotransmitter symporter; KEGG: maq:Maqu_2879 sodium:neurotransmitter symporter
YP_001340022.1	TIGRFAM: L-2,4-diaminobutyric acid acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: maq:Maqu_0147 L-2,4-diaminobutyric acid acetyltransferase
YP_001340023.1	catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde
YP_001340024.1	N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid
YP_001340025.1	TIGRFAM: ectoine hydroxylase; PFAM: Phytanoyl-CoA dioxygenase; KEGG: hch:HCH_01507 phytanoyl-CoA deoxygenase family protein
YP_001340026.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP
YP_001340027.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE domain protein; KEGG: ppr:PBPRB0723 putative signal transduction protein
YP_001340028.1	PFAM: HupE/UreJ protein; KEGG: ret:RHE_PB00145 hypothetical protein
YP_001340029.1	KEGG: vvy:VV1797 hypothetical protein
YP_001340030.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: hch:HCH_05471 putative threonine efflux protein
YP_001340031.1	PFAM: zinc finger DksA/TraR C4-type; KEGG: pau:PA14_64410 putative zinc-finger containing protein
YP_001340033.1	TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; KEGG: rha:RHA1_ro05723 ribose-phosphate diphosphokinase
YP_001340034.1	PFAM: NUDIX hydrolase; KEGG: bte:BTH_II0273 conserved hypothetical protein TIGR00052
YP_001340035.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: tte:TTE0201 Transcriptional regulator
YP_001340036.1	KEGG: pat:Patl_3307 dienelactone hydrolase-like
YP_001340037.1	PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; KEGG: bsu:BG12130 similar to transcriptional regulator (AraC/XylS family)
YP_001340038.1	PFAM: major facilitator superfamily MFS_1; KEGG: cth:Cthe_2967 major facilitator superfamily MFS_1
YP_001340039.1	KEGG: shw:Sputw3181_0087 transcriptional regulator, XRE family
YP_001340040.1	KEGG: eca:ECA0274 hypothetical protein
YP_001340041.1	KEGG: eca:ECA0275 hypothetical protein
YP_001340042.1	PFAM: helix-turn-helix domain protein; KEGG: shm:Shewmr7_3944 transcriptional regulator, XRE family
YP_001340043.1	catalyzes the formation of malate from glyoxylate and acetyl-CoA
YP_001340044.1	Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates
YP_001340045.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: hch:HCH_03646 signal transduction histidine kinase
YP_001340046.1	PFAM: protein of unknown function DUF796; KEGG: vch:VCA0017 hcp protein
YP_001340047.1	PFAM: Rhs element Vgr protein; KEGG: vch:VCA0018 VgrG protein
YP_001340048.1	KEGG: hch:HCH_03768 hypothetical protein
YP_001340053.1	KEGG: vch:VC1416 VgrG protein
YP_001340055.1	PFAM: Peptidoglycan-binding LysM
YP_001340056.1	KEGG: maq:Maqu_2149 peptidoglycan-binding LysM
YP_001340058.1	PFAM: Rhs element Vgr protein; KEGG: vch:VCA0018 VgrG protein
YP_001340059.1	PFAM: protein of unknown function DUF796; KEGG: vch:VCA0017 hcp protein
YP_001340060.1	PFAM: uncharacterised conserved protein UCP028301; KEGG: vch:VCA0107 hypothetical protein
YP_001340061.1	PFAM: protein of unknown function DUF877; KEGG: vch:VCA0108 hypothetical protein
YP_001340062.1	PFAM: GPW/gp25 family protein; KEGG: vch:VCA0109 hypothetical protein
YP_001340063.1	PFAM: protein of unknown function DUF879; KEGG: vch:VCA0110 hypothetical protein
YP_001340064.1	PFAM: protein of unknown function DUF1305; KEGG: vch:VCA0111 hypothetical protein
YP_001340065.1	PFAM: Forkhead-associated protein; KEGG: vch:VCA0112 FHA domain-containing protein
YP_001340066.1	KEGG: vch:VCA0113 hypothetical protein
YP_001340067.1	PFAM: protein of unknown function DUF876; KEGG: vch:VCA0114 hypothetical protein
YP_001340068.1	KEGG: vch:VCA0115 hypothetical protein
YP_001340069.1	PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: vch:VCA0116 ClpB protein
YP_001340070.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: vch:VCA0117 sigma-54 dependent transcriptional regulator
YP_001340071.1	KEGG: vch:VCA0118 hypothetical protein
YP_001340072.1	PFAM: ImpA domain protein; KEGG: vch:VCA0119 hypothetical protein
YP_001340073.1	PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: vch:VCA0120 IcmF-related protein
YP_001340074.1	KEGG: vch:VCA0121 hypothetical protein
YP_001340075.1	PFAM: protein of unknown function DUF796; KEGG: vch:VCA0017 hcp protein
YP_001340076.1	PFAM: Rhs element Vgr protein; KEGG: vch:VCA0018 VgrG protein
YP_001340077.1	KEGG: pst:PSPTO_3850 hypothetical protein
YP_001340078.1	PFAM: Peptidoglycan-binding LysM
YP_001340082.1	KEGG: maq:Maqu_3326 hypothetical protein
YP_001340083.1	KEGG: maq:Maqu_3326 hypothetical protein
YP_001340084.1	KEGG: maq:Maqu_3325 hypothetical protein
YP_001340088.1	KEGG: abo:ABO_1733 hypothetical protein
YP_001340089.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: eca:ECA1288 LysR-family transcriptional regulator
YP_001340090.1	TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bcl:ABC0456 magnesium citrate secondary transporter
YP_001340091.1	PFAM: protein of unknown function DUF1446; KEGG: eca:ECA1286 hypothetical protein
YP_001340092.1	KEGG: eca:ECA1285 hypothetical protein
YP_001340093.1	PFAM: MgtC/SapB transporter; KEGG: pha:PSHAa1379 hypothetical protein
YP_001340094.1	PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_03985 histone acetyltransferase HPA2/related acetyltransferase
YP_001340095.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sfr:Sfri_1536 diguanylate cyclase
YP_001340096.1	KEGG: vvy:VV0984 hypothetical protein
YP_001340097.1	PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3340 integrase, catalytic region
YP_001340098.1	KEGG: dde:Dde_2987 transposase
YP_001340099.1	TIGRFAM: carboxylate/amino acid/amine transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: pha:PSHAa2186 hypothetical protein
YP_001340100.1	PFAM: OmpW family protein; OmpF family protein; KEGG: aha:AHA_3953 outer membrane protein W
YP_001340101.1	PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: pha:PSHAa1148 two-component regulator with metal-dependent phosphohydrolase, HD region
YP_001340102.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: ppu:PP_4690 rieske 2Fe-2S family protein
YP_001340103.1	PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: pfo:Pfl_4792 penicillin-binding protein 1B
YP_001340104.1	SMART: extracellular solute-binding protein family 3; KEGG: ppu:PP_3624 hypothetical protein
YP_001340105.1	TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: glycosyl transferase group 1; Starch synthase catalytic domain protein; KEGG: mgm:Mmc1_1521 glycogen/starch synthases, ADP-glucose type
YP_001340106.1	TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; KEGG: mgm:Mmc1_1522 glucose-1-phosphate adenylyltransferase
YP_001340107.1	TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: hch:HCH_02673 riboflavin synthase, alpha subunit
YP_001340108.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_001340109.1	TIGRFAM: signal peptidase I; PFAM: peptidase S24 S26A and S26B; KEGG: maq:Maqu_2247 signal peptidase I
YP_001340110.1	PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: csa:Csal_1631 ribonuclease III
YP_001340111.1	TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; Miro domain protein; KEGG: sde:Sde_2242 GTP-binding protein Era
YP_001340112.1	TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: pau:PA14_54300 DNA repair protein RecO
YP_001340113.1	TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: son:SO1352 holo-(acyl-carrier protein) synthase
YP_001340114.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: hch:HCH_01804 signal transduction histidine kinase
YP_001340115.1	TIGRFAM: cysteine synthase; cysteine synthase B; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: ppu:PP_1654 cysteine synthase B
YP_001340116.1	TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: ecv:APECO1_3746 23S rRNA (uracil-5-)-methyltransferase RumA
YP_001340117.1	TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; KEGG: pfo:Pfl_4217 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
YP_001340118.1	TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: psp:PSPPH_3715 MazG family protein
YP_001340119.1	catalyzes the formation of oxaloacetate from phosphoenolpyruvate
YP_001340120.1	PFAM: adenylate kinase; adenylate kinase lid domain protein; KEGG: tbd:Tbd_1504 adenylate kinase
YP_001340121.1	PFAM: peptidase M22 glycoprotease; KEGG: plu:plu2132 hypothetical protein
YP_001340122.1	TIGRFAM: putative undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; KEGG: pat:Patl_1046 putative undecaprenol kinase
YP_001340123.1	PFAM: protein of unknown function DUF548; KEGG: maq:Maqu_2229 protein of unknown function DUF548
YP_001340124.1	PFAM: SlyX family protein; KEGG: bja:bsl2402 SlyX protein
YP_001340125.1	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: hch:HCH_05263 cold shock protein
YP_001340126.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pat:Patl_3734 redoxin
YP_001340127.1	TIGRFAM: aspartate 1-decarboxylase; PFAM: aspartate decarboxylase; KEGG: sde:Sde_1062 aspartate 1-decarboxylase
YP_001340128.1	KEGG: hch:HCH_05262 hypothetical protein
YP_001340130.1	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.
YP_001340131.1	PFAM: arsenate reductase and related; KEGG: abo:ABO_1139 ArsC related protein
YP_001340132.1	KEGG: sde:Sde_2606 tetrahydrodipicolinate succinylase, putative
YP_001340133.1	PFAM: aminotransferase class I and II; KEGG: pfl:PFL_1173 aminotransferase, classes I and II
YP_001340134.1	KEGG: pau:PA14_17040 protein-P-II uridylyltransferase; TIGRFAM: protein-P-II uridylyltransferase; PFAM: amino acid-binding ACT domain protein; DNA polymerase beta domain protein region; metal-dependent phosphohydrolase HD sub domain; GlnD PII-uridylyltransferase; SMART: metal-dependent phosphohydrolase HD region
YP_001340135.1	TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: pin:Ping_3003 methionine aminopeptidase, type I
YP_001340136.1	PFAM: ribosomal protein S2; KEGG: maq:Maqu_2548 ribosomal protein S2
YP_001340137.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_001340138.1	Catalyzes the phosphorylation of UMP to UDP
YP_001340139.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_001340140.1	TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; KEGG: abo:ABO_1147 undecaprenyl diphosphate synthase
YP_001340141.1	PFAM: phosphatidate cytidylyltransferase; KEGG: pfl:PFL_1181 phosphatidate cytidylyltransferase
YP_001340142.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_001340143.1	TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: pae:PA3649 hypothetical zinc metalloprotease
YP_001340144.1	PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: maq:Maqu_2540 surface antigen (D15)
YP_001340145.1	PFAM: outer membrane chaperone Skp (OmpH); KEGG: hch:HCH_05242 outer membrane protein
YP_001340146.1	TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; KEGG: pae:PA3646 UDP-3-O-[3-hydroxylauroyl
YP_001340147.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_001340148.1	TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; KEGG: abo:ABO_1155 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosa MinE O-acyl
YP_001340149.1	TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; KEGG: maq:Maqu_2535 lipid-A-disaccharide synthase
YP_001340150.1	PFAM: ribonuclease HII/HIII; KEGG: plu:plu0686 ribonuclease HII (RNase HII)
YP_001340151.1	KEGG: hch:HCH_01861 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein
YP_001340152.1	TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase alpha subunit; KEGG: csa:Csal_0579 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
YP_001340153.1	TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase; KEGG: psp:PSPPH_3823 tRNA(Ile)-lysidine synthetase
YP_001340154.1	KEGG: pha:PSHAa1077 hypothetical protein
YP_001340155.1	PFAM: secretion protein HlyD family protein; KEGG: pha:PSHAa1078 secretion protein
YP_001340156.1	PFAM: Fusaric acid resistance protein conserved region; KEGG: pha:PSHAa1079 hypothetical protein ; membrane protein
YP_001340157.1	KEGG: osa:4352720 Os12g0601200
YP_001340158.1	KEGG: saz:Sama_3555 hypothetical protein
YP_001340159.1	PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ppu:PP_3738 transcriptional regulator VanR, putative
YP_001340160.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: ppu:PP_3736 vanillate demethylase A
YP_001340161.1	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: ppu:PP_3737 vanillate O-demethylase oxidoreductase
YP_001340162.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_001340163.1	PFAM: enolase; KEGG: sfr:Sfri_1052 phosphopyruvate hydratase
YP_001340164.1	PFAM: Septum formation initiator; KEGG: vfi:VF2074 cell division protein FtsB
YP_001340165.1	TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: pau:PA14_17340 4-diphosphocytidyl-2-methyl-D-erithritol synthase
YP_001340166.1	TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; KEGG: hin:HI0671 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
YP_001340167.1	PFAM: tRNA pseudouridine synthase D TruD; KEGG: aha:AHA_0825 tRNA pseudouridine synthase D
YP_001340168.1	TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; KEGG: hso:HS_1500 stationary-phase survival protein, acid phosphatase
YP_001340169.1	TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: maq:Maqu_0927 protein-L-isoaspartate O-methyltransferase
YP_001340170.1	PFAM: protein of unknown function DUF368; KEGG: gfo:orf758 membrane protein containing DUF368
YP_001340171.1	PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: ppu:PP_1622 lipoprotein NlpD
YP_001340172.1	TIGRFAM: RNA polymerase sigma factor RpoS; RNA polymerase sigma-70; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: csa:Csal_2631 sigma 28 (flagella/sporulation)
YP_001340173.1	KEGG: abo:ABO_0435 hypothetical protein
YP_001340174.1	TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase subfamily IB hypothetical 1; KEGG: cch:Cag_0409 phosphoserine phosphatase SerB
YP_001340175.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: saz:Sama_3449 regulatory protein, LysR
YP_001340177.1	TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: psb:Psyr_2137 molybdenum cofactor biosynthesis protein
YP_001340178.1	TIGRFAM: molybdenum cofactor synthesis domain; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: hch:HCH_04900 molybdopterin biosynthesis enzyme
YP_001340179.1	TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: hch:HCH_05868 molybdenum cofactor biosynthesis enzyme
YP_001340180.1	PFAM: acyl-CoA thioesterase; KEGG: pha:PSHAa0141 acyl-CoA thioesterase II
YP_001340181.1	TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: psb:Psyr_0566 4Fe-4S cluster binding
YP_001340182.1	KEGG: hch:HCH_00885 hypothetical protein
YP_001340183.1	TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: maq:Maqu_0882 acetolactate synthase, large subunit, biosynthetic type
YP_001340184.1	TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: maq:Maqu_0883 acetolactate synthase, small subunit
YP_001340185.1	PFAM: regulatory protein AsnC/Lrp family; KEGG: gvi:glr2681 AsnC family transcriptional regulatory protein
YP_001340186.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: saz:Sama_1406 protein of unknown function DUF6, transmembrane
YP_001340187.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_0976 lysine exporter protein (LysE/YggA)
YP_001340188.1	catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2
YP_001340189.1	PFAM: amino acid permease-associated region; KEGG: aha:AHA_1202 AsoB
YP_001340190.1	PFAM: regulatory protein AsnC/Lrp family; KEGG: saz:Sama_3459 putative transcriptional regulator, AsnC family
YP_001340191.1	PFAM: Chloride channel core; KEGG: sde:Sde_0832 chloride channel
YP_001340192.1	TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: hch:HCH_06248 glutamate-1-semialdehyde-2,1-aminomutase
YP_001340193.1	TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: pat:Patl_1340 CDP-diacylglycerol--serine O-phosphatidyltransferase
YP_001340194.1	in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ
YP_001340195.1	PFAM: Ferric reductase domain protein transmembrane component domain; KEGG: mca:MCA0843 hypothetical protein
YP_001340196.1	KEGG: noc:Noc_2202 hypothetical protein
YP_001340197.1	KEGG: maq:Maqu_3342 hypothetical protein
YP_001340198.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: maq:Maqu_3811 transcriptional regulator, LysR family
YP_001340199.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: maq:Maqu_3812 protein of unknown function DUF6, transmembrane
YP_001340200.1	PFAM: regulatory protein TetR; KEGG: abo:ABO_1706 transcriptional regulator, TetR family
YP_001340201.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: pat:Patl_1371 NADH:flavin oxidoreductase/NADH oxidase
YP_001340202.1	PFAM: protein of unknown function UPF0153; KEGG: cps:CPS_2168 conserved hypothetical protein
YP_001340203.1	PFAM: phospholipase D/Transphosphatidylase; KEGG: pat:Patl_1467 phospholipase D/transphosphatidylase
YP_001340204.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pat:Patl_1468 endonuclease/exonuclease/phosphatase
YP_001340205.1	KEGG: pat:Patl_4135 hypothetical protein
YP_001340206.1	KEGG: hch:HCH_01007 hypothetical protein
YP_001340207.1	TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: ppu:PP_0841 rrf2 family protein
YP_001340208.1	with SufCD activates cysteine desulfurase SufS
YP_001340209.1	TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ilo:IL0153 cysteine desulfurase activator ATPase
YP_001340210.1	TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: ilo:IL0152 cysteine desulfurase activator SufB
YP_001340211.1	TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; KEGG: ilo:IL0151 selenocysteine lyase/cysteine desulfurase
YP_001340212.1	TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: ilo:IL0150 Fe-S cluster assembly scaffold protein
YP_001340213.1	PFAM: protein of unknown function DUF59; KEGG: ilo:IL0149 predicted metal-sulfur cluster enzyme
YP_001340214.1	PFAM: Fe-S metabolism associated SufE; KEGG: ilo:IL0148 cysteine desulfurase SufE subunit
YP_001340215.1	PFAM: aminotransferase class V; KEGG: pau:PA14_14730 cysteine desulfurase
YP_001340216.1	PFAM: nucleoside diphosphate kinase; KEGG: abo:ABO_1864 nucleoside-diphosphate kinase
YP_001340217.1	TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: psb:Psyr_1245 conserved hypothetical protein 48
YP_001340218.1	KEGG: ppr:PBPRA0761 hypothetical fimbrial biogenesis and twitching motility protein
YP_001340219.1	KEGG: vch:VC0758 hypothetical protein
YP_001340220.1	TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein; KEGG: hch:HCH_04456 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
YP_001340221.1	TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; KEGG: maq:Maqu_1128 histidyl-tRNA synthetase
YP_001340222.1	KEGG: pau:PA14_14900 hypothetical protein
YP_001340223.1	SMART: Pyrrolo-quinoline quinone; KEGG: yen:YE1076 putative lipoprotein
YP_001340224.1	TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; SMART: AAA ATPase; KEGG: maq:Maqu_1131 small GTP-binding protein
YP_001340225.1	TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: protein of unknown function DUF201; glutathione synthetase ATP-binding; RimK domain protein ATP-grasp; KEGG: pat:Patl_3666 alpha-L-glutamate ligases, RimK family
YP_001340226.1	PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: sde:Sde_2033 hypothetical protein
YP_001340227.1	KEGG: pha:PSHAa0359 hypothetical protein
YP_001340228.1	PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sde:Sde_2898 radical SAM
YP_001340229.1	PFAM: thiopurine S-methyltransferase; KEGG: bpe:BP0873 thiopurine S-methyltransferase
YP_001340230.1	KEGG: aha:AHA_1634 hypothetical protein
YP_001340231.1	PFAM: protein of unknown function DUF1304; KEGG: mlo:mll3930 hypothetical protein
YP_001340232.1	PFAM: DinB family protein; KEGG: maq:Maqu_1078 DinB family protein
YP_001340233.1	PFAM: protein kinase; leucine-rich repeat protein; SMART: serine/threonine protein kinase; leucine-rich repeat-containing protein typical subtype; KEGG: pin:Ping_2351 serine/threonine protein kinase
YP_001340234.1	KEGG: dde:Dde_2987 transposase
YP_001340235.1	PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3340 integrase, catalytic region
YP_001340236.1	PFAM: 67-dimethyl-8-ribityllumazine synthase; KEGG: rha:RHA1_ro01631 riboflavin synthase beta subunit
YP_001340238.1	TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: hch:HCH_06478 precorrin-3B methylase
YP_001340239.1	TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: hch:HCH_06479 precorrin-4 C11-methyltransferase
YP_001340240.1	TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: hch:HCH_06503 putative GTPase (G3E family)
YP_001340241.1	TIGRFAM: cobaltochelatase, CobN subunit; PFAM: CobN/magnesium chelatase; KEGG: hch:HCH_06504 cobaltochelatase, CobN subunit
YP_001340242.1	PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: pmt:PMT0901 hypothetical protein
YP_001340243.1	KEGG: vvy:VV1369 hypothetical protein
YP_001340244.1	PFAM: Saccharopine dehydrogenase; KEGG: ppu:PP_2928 hypothetical protein
YP_001340245.1	TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pen:PSEEN2366 carboxynorspermidine decarboxylase NspC
YP_001340246.1	PFAM: NnrUfamily protein; KEGG: mpt:Mpe_A0055 hypothetical protein
YP_001340247.1	PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: aha:AHA_4083 methyl-accepting chemotaxis protein
YP_001340248.1	KEGG: hch:HCH_02507 molecular chaperone
YP_001340249.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: shn:Shewana3_1293 methyl-accepting chemotaxis sensory transducer
YP_001340250.1	PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_B2270 putative major facilitator superfamily (MFS)oxalate/formate antiporter
YP_001340251.1	KEGG: rpa:RPA2510 hypothetical protein
YP_001340252.1	KEGG: rpe:RPE_2231 hypothetical protein
YP_001340253.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: hch:HCH_06745 transcriptional regulator
YP_001340254.1	PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_1423 major facilitator superfamily MFS_1
YP_001340255.1	KEGG: pau:PA14_15050 hypothetical protein
YP_001340256.1	TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ppu:PP_4838 outer membrane copper receptor OprC
YP_001340257.1	PFAM: Heat shock protein 70; KEGG: pfl:PFL_5232 chaperone protein HscC
YP_001340258.1	PFAM: TPR repeat-containing protein; heat shock protein DnaJ domain protein; SMART: Tetratricopeptide domain protein; KEGG: btl:BALH_2858 TPR repeat-containing protein
YP_001340259.1	KEGG: hch:HCH_06118 hypothetical protein
YP_001340260.1	KEGG: cps:CPS_2162 hypothetical protein
YP_001340261.1	PFAM: 3'-5' exonuclease; KEGG: dar:Daro_2470 3'-5' exonuclease
YP_001340262.1	KEGG: pca:Pcar_0527 hypothetical protein
YP_001340263.1	TIGRFAM: addiction module toxin, RelE/StbE family; KEGG: pca:Pcar_0528 hypothetical protein
YP_001340264.1	TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: sde:Sde_2751 ATPase
YP_001340265.1	TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: vpa:VP1820 hypothetical protein
YP_001340266.1	TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: vpa:VP1821 putative YefM protein
YP_001340267.1	dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate
YP_001340269.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_001340270.1	PFAM: protein of unknown function DUF299; KEGG: cps:CPS_3013 hypothetical protein
YP_001340271.1	KEGG: hch:HCH_01709 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; SMART: Cold shock protein
YP_001340272.1	TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: pfl:PFL_0578 RNA methyltransferase, TrmH family, group 3
YP_001340273.1	PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: sde:Sde_0630 response regulator receiver domain protein (CheY-like)
YP_001340274.1	PFAM: cobalamin-5-phosphate synthase CobS; KEGG: shn:Shewana3_3277 cobalamin 5'-phosphate synthase
YP_001340275.1	PFAM: Phosphoglycerate mutase; KEGG: lil:LA4206 phosphoglycerate mutase
YP_001340276.1	PFAM: protein of unknown function UPF0126; KEGG: tcx:Tcr_1171 hypothetical protein
YP_001340277.1	TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: hch:HCH_06467 cob(I)alamin adenosyltransferase
YP_001340279.1	PFAM: Superoxide dismutase Ni-type; KEGG: cps:CPS_0444 putative nickel-containing superoxide dismutase
YP_001340280.1	PFAM: peptidase S24 S26A and S26B; KEGG: cps:CPS_0445 hypothetical protein
YP_001340281.1	PFAM: protein of unknown function DUF161; KEGG: eca:ECA3669 hypothetical protein
YP_001340282.1	PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: bja:bll2682 maleylacetate reductase
YP_001340283.1	PFAM: short chain fatty acid transporter; KEGG: pcr:Pcryo_0888 short chain fatty acid transporter
YP_001340284.1	PFAM: GCN5-related N-acetyltransferase; KEGG: eca:ECA0954 acetyltransferase
YP_001340285.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: abo:ABO_2537 pseudouridylate synthase
YP_001340286.1	KEGG: vpa:VP1166 hypothetical protein
YP_001340287.1	PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YcdC domain protein; KEGG: cps:CPS_1965 transcriptional regulator, TetR family
YP_001340288.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: pat:Patl_0523 multi-sensor hybrid histidine kinase
YP_001340289.1	PFAM: Dopa 45-dioxygenase; KEGG: pfl:PFL_0034 hypothetical protein
YP_001340290.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ssa:SSA_0933 acetyltransferase, GNAT family, putative
YP_001340291.1	PFAM: peptidylprolyl isomerase FKBP-type; KEGG: csa:Csal_1297 peptidylprolyl isomerase, FKBP-type
YP_001340292.1	KEGG: pmy:Pmen_0121 hypothetical protein
YP_001340293.1	KEGG: pnu:Pnuc_2058 uracil-DNA glycosylase superfamily
YP_001340294.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cps:CPS_3899 acetyltransferase, GNAT family
YP_001340295.1	TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: vvy:VVA1347 predicted epimerase
YP_001340296.1	KEGG: saz:Sama_1003 hypothetical protein
YP_001340297.1	PFAM: protein of unknown function DUF962; KEGG: pfl:PFL_0196 hypothetical protein
YP_001340299.1	PFAM: regulatory protein AsnC/Lrp family; regulatory protein ArsR; KEGG: pfl:PFL_0761 transcriptional regulator, AsnC family
YP_001340300.1	PFAM: aminotransferase class V; KEGG: rde:RD1_2293 aminotransferase, putative
YP_001340301.1	TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: cte:CT0937 nitroreductase family protein
YP_001340302.1	KEGG: pcr:Pcryo_2255 hypothetical protein
YP_001340303.1	PFAM: Na+ symporter; KEGG: maq:Maqu_0900 Na+/solute symporter
YP_001340304.1	KEGG: csa:Csal_0872 hypothetical protein
YP_001340305.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cvi:CV0163 fosfomycin resistance protein FofB
YP_001340306.1	PFAM: MOSC domain containing protein; KEGG: dar:Daro_1811 MOSC
YP_001340307.1	PFAM: aminotransferase class V; KEGG: nca:Noca_2695 aminotransferase, class V
YP_001340308.1	PFAM: regulatory protein AsnC/Lrp family; KEGG: rpc:RPC_2964 transcriptional regulator, AsnC family
YP_001340309.1	KEGG: sfr:Sfri_1779 hypothetical protein
YP_001340310.1	PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: cps:CPS_1815 cobalamin synthesis protein/P47K family protein
YP_001340311.1	PFAM: acriflavin resistance protein; KEGG: pat:Patl_3597 acriflavin resistance protein
YP_001340312.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sfr:Sfri_3678 efflux transporter, RND family, MFP subunit
YP_001340313.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sfr:Sfri_3679 RND efflux system, outer membrane lipoprotein, NodT family protein
YP_001340314.1	PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pfl:PFL_6043 transcriptional regulator, GntR family/aminotransferase, classes I and II family protein
YP_001340315.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ppr:PBPRA0299 hypothetical protein
YP_001340316.1	PFAM: Excinuclease ABC C subunit domain protein; KEGG: she:Shewmr4_0137 excinuclease ABC, C subunit domain protein
YP_001340317.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: hch:HCH_06495 lactoylglutathione lyase
YP_001340318.1	PFAM: glycosyl transferase group 1; KEGG: maq:Maqu_0779 glycosyl transferase, group 1
YP_001340319.1	TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pha:PSHAb0119 putative helicase (RecQ-like)
YP_001340320.1	catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages
YP_001340321.1	PFAM: TPR repeat-containing protein; response regulator receiver; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_04305 FOG: CheY-like receiver
YP_001340322.1	PFAM: response regulator receiver; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_04305 FOG: CheY-like receiver
YP_001340323.1	KEGG: ppr:PBPRB1854 hypothetical protein
YP_001340324.1	PFAM: chemotaxis sensory transducer; KEGG: shw:Sputw3181_1289 methyl-accepting chemotaxis sensory transducer
YP_001340325.1	TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ppu:PP_2119 ABC efflux transporter, permease/ATP-binding protein, putative
YP_001340326.1	TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: aha:AHA_3615 glycogen debranching enzyme GlgX
YP_001340327.1	TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; KEGG: aha:AHA_3616 1,4-alpha-glucan branching enzyme
YP_001340328.1	PFAM: phosphorylase kinase alphabeta; KEGG: syf:Synpcc7942_1650 phosphorylase kinase alpha subunit
YP_001340329.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ilo:IL1296 methyl-accepting chemotaxis protein
YP_001340330.1	KEGG: tcx:Tcr_0229 hypothetical protein
YP_001340331.1	PFAM: Sporulation domain protein; KEGG: mmr:Mmar10_1913 sporulation domain protein
YP_001340332.1	KEGG: ilo:IL2180 hypothetical protein
YP_001340333.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rde:RD1_2187 TRAP transporter, DctM subunit, putative
YP_001340334.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: rde:RD1_2186 TRAP transporter, DctQ-like subunit, putative
YP_001340335.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rde:RD1_2185 C4-dicarboxylate-binding periplasmic protein, putative
YP_001340336.1	PFAM: pyruvate carboxyltransferase; KEGG: reh:H16_A1235 hydroxymethylglutaryl-CoA lyase
YP_001340337.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reh:H16_A1234 predicted acyl-CoA transferase/carnitine dehydratase
YP_001340338.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppd:Ppro_1925 transcriptional regulator, LysR family
YP_001340340.1	PFAM: transglutaminase domain protein; KEGG: sde:Sde_1983 transglutaminase-like domain
YP_001340341.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: sit:TM1040_2155 multi antimicrobial extrusion protein MatE
YP_001340342.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sil:SPOA0344 transcriptional regulator, LysR family
YP_001340343.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: cps:CPS_3139 putative 4-carboxymuconolactone decarboxylase
YP_001340344.1	PFAM: HI0933 family protein; FAD dependent oxidoreductase; KEGG: vvy:VVA0173 uncharacterized FAD-dependent dehydrogenase
YP_001340345.1	TIGRFAM: 5'-nucleotidase, lipoprotein e(P4) family; PFAM: acid phosphatase (Class B); KEGG: cno:NT01CX_0594 5'-nucleotidase, lipoprotein e(P4) family
YP_001340346.1	PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: mag:amb4188 di- and tricarboxylate transporters
YP_001340347.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis
YP_001340348.1	PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: rme:Rmet_5002 major facilitator superfamily MFS_1
YP_001340349.1	KEGG: sfr:Sfri_1722 putative transcriptional regulator, fis family protein
YP_001340350.1	PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: jan:Jann_3348 sodium/hydrogen exchanger
YP_001340351.1	KEGG: rfr:Rfer_4072 protoporphyrinogen oxidase
YP_001340352.1	PFAM: GTPase EngC; KEGG: ppr:PBPRB0385 hypothetical GTPases
YP_001340353.1	PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: vpa:VP1773 hypothetical protein
YP_001340354.1	KEGG: shw:Sputw3181_2782 hypothetical protein
YP_001340355.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: sdn:Sden_3709 sigma-54 factor, interaction region
YP_001340358.1	TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; KEGG: afm:Afu5g06160 5-proFAR isomerase
YP_001340359.1	PFAM: Class I peptide chain release factor; KEGG: pau:PA14_53030 hypothetical protein
YP_001340360.1	TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cps:CPS_2546 O-acetylhomoserine/O-acetylserine sulfhydrylase
YP_001340361.1	KEGG: vch:VCA0651 hypothetical protein
YP_001340362.1	KEGG: vvy:VV0791 hypothetical protein
YP_001340363.1	KEGG: vch:VCA0649 hypothetical protein
YP_001340364.1	KEGG: vch:VCA0648 hypothetical protein
YP_001340365.1	PFAM: YHS domain protein; KEGG: vvy:VV0794 hypothetical protein
YP_001340366.1	KEGG: mmr:Mmar10_1464 hypothetical protein
YP_001340367.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: vvu:VV1_0403 putative hemolysin
YP_001340368.1	PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: vpa:VP1053 cytochrome d ubiquinol oxidase, subunit I
YP_001340369.1	TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: son:SO3285 cytochrome bd-I oxidase subunit II
YP_001340370.1	TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: sfr:Sfri_1144 cyd operon protein YbgT
YP_001340371.1	TIGRFAM: ABC transporter CydDC cysteine exporter (CydDC-E) family permease/ATP-binding protein CydD; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: aha:AHA_3029 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD
YP_001340372.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pmu:PM0571 ATP-binding transport protein, putative
YP_001340373.1	KEGG: aha:AHA_3562 alpha/beta superfamily hydrolase
YP_001340374.1	KEGG: gme:Gmet_2540 ATP-binding region, ATPase-like
YP_001340375.1	KEGG: pau:PA14_32280 hypothetical protein
YP_001340376.1	KEGG: pau:PA14_32280 hypothetical protein
YP_001340377.1	KEGG: bam:Bamb_5425 hypothetical protein
YP_001340378.1	KEGG: aeh:Mlg_0384 hypothetical protein
YP_001340379.1	KEGG: aeh:Mlg_0385 hypothetical protein
YP_001340380.1	KEGG: cvi:CV1954 hypothetical protein
YP_001340381.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: aha:AHA_1994 glucose 1-dehydrogenase
YP_001340382.1	TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: ilo:IL0070 O6-methylguanine-DNA methyltransferase
YP_001340383.1	PFAM: helix-turn-helix domain protein; KEGG: csa:Csal_0389 transcriptional regulator, XRE family
YP_001340384.1	PFAM: AzlC family protein; KEGG: bbr:BB1393 hypothetical protein
YP_001340385.1	PFAM: branched-chain amino acid transport
YP_001340386.1	KEGG: sfr:Sfri_0512 hypothetical protein
YP_001340387.1	TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: sfr:Sfri_0867 thioredoxin
YP_001340388.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pha:PSHAb0147 putative 4Fe-4S ferredoxin
YP_001340389.1	PFAM: peptidase U32; KEGG: aha:AHA_1017 peptidase, U32 family
YP_001340390.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pha:PSHAb0279 putative outer membrane receptor
YP_001340391.1	KEGG: cps:CPS_0008 hypothetical protein
YP_001340392.1	KEGG: hch:HCH_01525 protein of unknown function (DUF748)
YP_001340393.1	PFAM: protein of unknown function DUF454; KEGG: hch:HCH_04406 hypothetical protein
YP_001340394.1	Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A)
YP_001340395.1	PFAM: OmpA/MotB domain protein; KEGG: hch:HCH_04990 outer membrane protein and related peptidoglycan-associated (LipO)protein
YP_001340396.1	PFAM: argininosuccinate synthase; ExsB family protein; KEGG: csa:Csal_2127 argininosuccinate synthase
YP_001340397.1	PFAM: PfkB domain protein; KEGG: pat:Patl_3505 PfkB
YP_001340398.1	PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: pat:Patl_3506 inosine/uridine-preferring nucleoside hydrolase
YP_001340399.1	PFAM: RNP-1 like RNA-binding protein; KEGG: ppr:PBPRB1959 hypothetical protein
YP_001340401.1	catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate
YP_001340402.1	KEGG: hch:HCH_01887 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop
YP_001340403.1	in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase
YP_001340404.1	TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: maq:Maqu_0934 electron transport complex, RnfABCDGE type, G subunit
YP_001340405.1	TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: hch:HCH_01891 predicted NADH:ubiquinone oxidoreductase, subunit RnfD
YP_001340406.1	TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: abo:ABO_1611 electron transport complex protein RnfC
YP_001340407.1	part of membrane-bound complex thought to be involved in electron transport to nitrogen
YP_001340408.1	TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: hch:HCH_01895 predicted NADH:ubiquinone oxidoreductase, subunit RnfA
YP_001340409.1	TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: t-RNA-binding domain protein; tRNA synthetase class I (M); KEGG: maq:Maqu_0939 methionyl-tRNA synthetase
YP_001340410.1	KEGG: pfl:PFL_4843 ParA family protein
YP_001340411.1	TIGRFAM: deoxycytidine triphosphate deaminase; KEGG: cps:CPS_2837 deoxycytidine triphosphate deaminase
YP_001340412.1	PFAM: Integrase catalytic region; KEGG: pae:PA0978 hypothetical protein
YP_001340413.1	PFAM: transposase IS3/IS911 family protein; KEGG: pau:PA14_51620 possible transposase
YP_001340416.1	PFAM: NUDIX hydrolase; KEGG: pin:Ping_1812 nucleotide phosphate derivative pyrophosphohydrolases, MutT/NUDIX family protein
YP_001340417.1	PFAM: protein of unknown function DUF1499; KEGG: dps:DP1404 hypothetical protein
YP_001340418.1	PFAM: protein of unknown function DUF533; KEGG: ppu:PP_1487 hypothetical protein
YP_001340419.1	PFAM: protein of unknown function DUF1294; KEGG: son:SO1395 membrane protein,putative
YP_001340420.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: sfr:Sfri_1721 diguanylate cyclase with PAS/PAC sensor
YP_001340421.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_001340422.1	KEGG: pat:Patl_0386 outer membrane protein, porin family
YP_001340423.1	KEGG: tcx:Tcr_1027 hypothetical protein
YP_001340424.1	repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates
YP_001340425.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: vpa:VP2858 transcriptional regulator CpxR
YP_001340426.1	part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors
YP_001340427.1	KEGG: sde:Sde_0377 hypothetical protein
YP_001340428.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ppr:PBPRB0483 hypothetical protein
YP_001340429.1	PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: vfi:VF0737 guanine-hypoxanthine permease
YP_001340430.1	PFAM: GumN family protein; KEGG: pat:Patl_2535 GumN
YP_001340431.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: vfi:VF0653 23S rRNA methyltransferase
YP_001340432.1	PFAM: protein of unknown function DUF481; KEGG: sde:Sde_0668 putative salt-induced outer membrane protein
YP_001340433.1	PFAM: cobalamin synthesis protein P47K; KEGG: eca:ECA2733 hypothetical protein
YP_001340434.1	PFAM: acyl-CoA dehydrogenase domain protein; KEGG: ppu:PP_0368 acyl-CoA dehydrogenase, putative
YP_001340435.1	PFAM: Sterol-binding domain protein; KEGG: csa:Csal_1939 sterol-binding
YP_001340436.1	PFAM: AMP-dependent synthetase and ligase; KEGG: psp:PSPPH_1427 long-chain-fatty-acid--CoA ligase
YP_001340437.1	KEGG: bxe:Bxe_C0333 hypothetical protein
YP_001340438.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_A0450 enoyl-CoA hydratase/isomerase
YP_001340439.1	PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: pat:Patl_2146 electron transfer flavoprotein beta-subunit
YP_001340440.1	PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: pat:Patl_0655 electron transfer flavoprotein, alpha subunit
YP_001340441.1	includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids
YP_001340442.1	FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids
YP_001340443.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: vch:VCA0630 D-3-phosphoglycerate dehydrogenase-related protein
YP_001340445.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: shn:Shewana3_0923 methyl-accepting chemotaxis sensory transducer
YP_001340446.1	PFAM: amidohydrolase; Amidohydrolase 3; KEGG: hch:HCH_05147 cytosine deaminase and related metal-dependent hydrolase
YP_001340447.1	PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: csa:Csal_2351 permease for cytosine/purines, uracil, thiamine, allantoin
YP_001340448.1	TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: hch:HCH_03207 catalase/peroxidase HPI
YP_001340449.1	PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: cvi:CV3285 probable methyl-accepting chemotaxis protein
YP_001340450.1	KEGG: sfr:Sfri_1839 hypothetical protein
YP_001340451.1	PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_06946 acetyltransferase
YP_001340452.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: hch:HCH_05772 transcriptional regulator
YP_001340453.1	KEGG: sit:TM1040_3343 periplasmic binding protein/LacI transcriptional regulator
YP_001340454.1	PFAM: inner-membrane translocator; KEGG: bxe:Bxe_A1328 ABC sugar transporter, inner membrane subunit
YP_001340455.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bte:BTH_I2646 sugar ABC transporter, ATP-binding protein
YP_001340456.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: hch:HCH_05768 predicted dehydrogenase and related protein
YP_001340457.1	PFAM: PfkB domain protein; KEGG: hch:HCH_01160 sugar kinase, ribokinase family
YP_001340458.1	PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: ppr:PBPRB0476 putative acetolactate synthase
YP_001340459.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: hch:HCH_01158 sugar phosphate isomerases/epimerase
YP_001340460.1	TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: hch:HCH_01157 methylmalonate-semialdehyde dehydrogenase
YP_001340461.1	PFAM: Myo-inositol catabolism IolB domain protein; KEGG: gka:GK1889 myo-inositol catabolism protein
YP_001340462.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: mlo:mll4991 myo-inositol dehydrogenase (idhA)
YP_001340463.1	KEGG: ppu:PP_4572 hypothetical protein
YP_001340464.1	PFAM: thioesterase superfamily protein; KEGG: cvi:CV4256 hypothetical protein
YP_001340465.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: sme:SMb20366 putative transcriptional regulator protein
YP_001340466.1	KEGG: sme:SMb20151 hypothetical protein
YP_001340467.1	PFAM: inositol monophosphatase; KEGG: sme:SMb20150 putative inositol monophosphatase protein
YP_001340468.1	KEGG: sme:SMb20157 hypothetical ABC transporter periplasmic solute-binding protein
YP_001340469.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sme:SMb20156 putative ABC transporter ATP-binding protein
YP_001340470.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMb20155 putative ABC transporter permease protein
YP_001340471.1	PFAM: pentapeptide repeat protein; KEGG: shw:Sputw3181_3561 pentapeptide repeat protein
YP_001340472.1	PFAM: isochorismatase hydrolase; KEGG: pin:Ping_2119 isochorismatase hydrolase
YP_001340473.1	KEGG: sde:Sde_3389 hypothetical protein
YP_001340474.1	P-type ATPase involved in the export of lead, cadmium, zinc and mercury
YP_001340475.1	TIGRFAM: L-fucose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: csa:Csal_0364 L-fucose permease
YP_001340476.1	PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; KEGG: bcl:ABC1456 transcriptional regulator, AraC/XylS family
YP_001340477.1	TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: cps:CPS_3732 sugar:cation symporter family protein
YP_001340478.1	PFAM: glycoside hydrolase family 3 domain protein; KEGG: rle:RL4489 putative glycosyl hydrolase
YP_001340479.1	PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: net:Neut_2081 GreA/GreB family elongation factor
YP_001340480.1	TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: abo:ABO_1784 non-ribosomal peptide synthase fragment
YP_001340481.1	PFAM: major facilitator superfamily MFS_1; KEGG: nfa:pnf1250 putative transporter
YP_001340482.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mba:Mbar_A0465 Fe(III) dicitrate ABC transporter, ATP-binding protein
YP_001340483.1	PFAM: transport system permease protein; KEGG: mba:Mbar_A0466 Fe(III) dicitrate ABC transporter, permease
YP_001340484.1	TIGRFAM: isochorismate synthase; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: eca:ECA0477 enterobactin synthetase component C (isochorismate synthase)
YP_001340485.1	PFAM: isochorismatase hydrolase; phosphopantetheine-binding; KEGG: eca:ECA0479 enterobactin synthetase component B (isochorismatase)
YP_001340486.1	catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin
YP_001340487.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ppu:PP_2590 outer membrane ferric siderophore receptor
YP_001340488.1	PFAM: periplasmic binding protein; KEGG: ppu:PP_2591 ferric siderophore ABC transporter, periplasmic siderophore-binding protein
YP_001340489.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppu:PP_2592 ferric siderophore ABC transporter, ATP-binding protein
YP_001340490.1	PFAM: transport system permease protein; KEGG: pen:PSEEN2495 ferric siderophore ABC transporter, permease protein BauC
YP_001340491.1	PFAM: transport system permease protein; KEGG: ppu:PP_2594 ferric siderophore ABC transporter, permease protein
YP_001340492.1	KEGG: pen:PSEEN2502 L-lysine 6-monooxygenase (NADPH)
YP_001340493.1	PFAM: condensation domain protein; Non-ribosomal peptide synthetase; KEGG: pen:PSEEN2503 non-ribosomal peptide synthetase BasA/D
YP_001340494.1	bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate
YP_001340495.1	PFAM: isochorismatase hydrolase; phosphopantetheine-binding; KEGG: bmb:BruAb2_0014 EntB, isochorismatase
YP_001340496.1	PFAM: AMP-dependent synthetase and ligase; KEGG: aci:ACIAD2772 putative non-ribosomal peptide synthetase with condensation, AMP-binding and phosphopantetheine-binding domains
YP_001340497.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shw:Sputw3181_3814 ABC transporter related
YP_001340498.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shw:Sputw3181_3813 ABC transporter-related protein
YP_001340499.1	catalyzes the formation of histamine from L-histidine
YP_001340500.1	PFAM: condensation domain protein; phosphopantetheine-binding; KEGG: pen:PSEEN2500 non ribosomal peptide synthetase BasB
YP_001340501.1	KEGG: sde:Sde_3124 hypothetical protein
YP_001340503.1	KEGG: bta:414350 pepsinogen A
YP_001340504.1	KEGG: reu:Reut_B5476 hypothetical protein
YP_001340505.1	TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; KEGG: syn:slr2104 two-component hybrid histidine kinase
YP_001340506.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: azo:azo2403 probable two-component response regulator
YP_001340507.1	KEGG: maq:Maqu_3687 hypothetical protein
YP_001340508.1	PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: hch:HCH_06978 transcriptional regulator
YP_001340509.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06979 ABC-type sugar transport system, ATPase components
YP_001340510.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_06980 ABC-type sugar transport system, permease component
YP_001340511.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_06981 ABC-type sugar transport system, permease components
YP_001340512.1	PFAM: extracellular solute-binding protein family 1; KEGG: hch:HCH_06982 ABC-type sugar transport system, periplasmic component
YP_001340513.1	TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: cps:CPS_1008 glucosamine-6-phosphate isomerase
YP_001340514.1	PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: hch:HCH_06985 predicted N-acetylglucosamine kinase
YP_001340515.1	TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; KEGG: hch:HCH_06986 N-acetylglucosamine-6-phosphate deacetylase
YP_001340516.1	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: sde:Sde_3760 putative cold-shock DNA-binding domain protein
YP_001340517.1	PFAM: beta-Ig-H3/fasciclin; KEGG: atc:AGR_C_835 hypothetical protein
YP_001340518.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: vvy:VVA0216 hypothetical protein
YP_001340519.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppr:PBPRA1728 putative transcriptional regulator, LysR family
YP_001340520.1	TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: pat:Patl_1471 methionine aminopeptidase, type I
YP_001340521.1	KEGG: pat:Patl_1470 hypothetical protein
YP_001340522.1	TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain; KEGG: hch:HCH_06959 tryptophan synthase, alpha subunit
YP_001340523.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_001340524.1	PFAM: regulatory protein TetR; KEGG: hch:HCH_06957 transcriptional regulator
YP_001340525.1	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rba:RB11273 bicyclomycin resistance protein
YP_001340526.1	PFAM: GCN5-related N-acetyltransferase; KEGG: mxa:MXAN_0328 acetyltransferase, GNAT family
YP_001340527.1	KEGG: hch:HCH_06061 hypothetical protein
YP_001340528.1	PFAM: formyl transferase domain protein; KEGG: ppd:Ppro_0055 methionyl-tRNA formyltransferase
YP_001340529.1	PFAM: phage Tail Collar domain protein; KEGG: sit:TM1040_3286 phage tail collar
YP_001340530.1	PFAM: phage Tail Collar domain protein; KEGG: shn:Shewana3_0167 phage tail collar domain protein
YP_001340531.1	PFAM: outer membrane efflux protein; KEGG: pin:Ping_3184 outer membrane efflux protein
YP_001340532.1	KEGG: pin:Ping_3183 AcrA-like protein
YP_001340533.1	KEGG: cps:CPS_4328 cadherin domain protein; TIGRFAM: putative outer membrane adhesin like proteiin; autotransporter-associated beta strand repeat protein; PFAM: Cadherin; glycosyl hydrolase BNR repeat-containing protein; Ig family protein; Haemagluttinin repeat-containing protein; SMART: Dystroglycan-type cadherin domain protein
YP_001340534.1	KEGG: pin:Ping_3181 hypothetical protein
YP_001340535.1	PFAM: peptidase M50; KEGG: pin:Ping_3180 peptidase M50
YP_001340536.1	KEGG: rru:Rru_B0036 hypothetical protein
YP_001340537.1	KEGG: hch:HCH_01288 hypothetical protein
YP_001340538.1	TIGRFAM: Guanine deaminase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: pfo:Pfl_1794 amidohydrolase
YP_001340539.1	KEGG: pin:Ping_0382 hypothetical protein
YP_001340540.1	PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pst:PSPTO_5007 ATP-independent RNA helicase DbpA
YP_001340541.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: she:Shewmr4_3821 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s)
YP_001340542.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: hch:HCH_01829 transcriptional regulator
YP_001340543.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: maq:Maqu_0453 oligopeptide/dipeptide ABC transporter, ATPase subunit
YP_001340544.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: csa:Csal_1870 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein
YP_001340545.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_01832 ABC-type dipeptide/oligopeptide/nickel transport system, permease components
YP_001340546.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_01833 ABC-type dipeptide/oligopeptide/nickel transport system, permease components
YP_001340547.1	PFAM: extracellular solute-binding protein family 5; KEGG: hch:HCH_01834 ABC-type dipeptide transport system, periplasmic component
YP_001340548.1	KEGG: hch:HCH_00671 hypothetical protein
YP_001340549.1	PFAM: GTP-binding protein HSR1-related; KEGG: shw:Sputw3181_2273 GTP-binding protein, HSR1-related
YP_001340552.1	PFAM: fatty acid cistrans isomerase; KEGG: vpa:VPA0677 fatty acid cis/trans isomerase
YP_001340553.1	PFAM: luciferase family protein; KEGG: pat:Patl_1808 luciferase-like
YP_001340554.1	PFAM: lipid A biosynthesis acyltransferase; KEGG: csa:Csal_2628 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase
YP_001340555.1	PFAM: lipopolysaccharide kinase; KEGG: pin:Ping_0330 Mn2+-dependent serine/threonine protein kinase
YP_001340556.1	PFAM: glycosyl transferase family 9; KEGG: pin:Ping_0329 glycosyl transferase, family 9
YP_001340557.1	KEGG: pin:Ping_1289 hypothetical protein
YP_001340558.1	PFAM: protein of unknown function DUF1285; KEGG: aci:ACIAD3258 hypothetical protein
YP_001340559.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: shn:Shewana3_2606 DEAD/DEAH box helicase domain protein
YP_001340560.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfr:Sfri_2783 transcriptional regulator, LysR family protein
YP_001340561.1	PFAM: protein of unknown function DUF1255; KEGG: pfo:Pfl_3952 protein of unknown function DUF1255
YP_001340562.1	PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; MLTD_N domain protein; KEGG: cps:CPS_1998 putative membrane-bound lytic murein transglycosylase
YP_001340563.1	PFAM: beta-lactamase domain protein; KEGG: psp:PSPPH_1710 hydroxyacylglutathione hydrolase, putative
YP_001340564.1	KEGG: hch:HCH_02526 SAM-dependent methyltransferase
YP_001340565.1	PFAM: ribonuclease H; KEGG: pen:PSEEN3559 RNase HI, degrades RNA of DNA-RNA hybrids
YP_001340566.1	KEGG: maq:Maqu_1533 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease
YP_001340567.1	involved in regulation of intracellular pH under alkaline conditions
YP_001340568.1	SohB; periplasmic protein; member of the peptidase S49 family
YP_001340570.1	TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pfo:Pfl_3866 transcription-repair coupling factor
YP_001340571.1	catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate
YP_001340572.1	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
YP_001340573.1	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
YP_001340574.1	TIGRFAM: NADH:ubiquinone oxidoreductase, subunit C; PFAM: FMN-binding domain protein; KEGG: abo:ABO_1034 Na+-transporting NADH:ubiquinone oxidoreductase,subunit C
YP_001340575.1	TIGRFAM: NADH:ubiquinone oxidoreductase, subunit D; PFAM: RnfA-Nqr electron transport subunit; KEGG: hch:HCH_02688 NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit
YP_001340576.1	TIGRFAM: NADH:ubiquinone oxidoreductase, subunit E; PFAM: RnfA-Nqr electron transport subunit; KEGG: abo:ABO_1036 Na(+)-translocating NADH-ubiquinone reductase subunit E
YP_001340577.1	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
YP_001340578.1	PFAM: ApbE family lipoprotein; KEGG: csa:Csal_1575 ApbE-like lipoprotein
YP_001340579.1	PFAM: protein of unknown function DUF539; KEGG: hch:HCH_02693 hypothetical protein
YP_001340580.1	catalyzes the conversion of NADPH to NADH
YP_001340581.1	PFAM: phosphoribosyltransferase; KEGG: gsu:GSU1017 hypoxanthine phosphoribosyltransferase, putative
YP_001340582.1	TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: hit:NTHI0384 tRNA processing ribonuclease BN
YP_001340583.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_001340584.1	TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP; KEGG: maq:Maqu_1840 ATP-dependent Clp protease, proteolytic subunit ClpP
YP_001340585.1	binds and unfolds substrates as part of the ClpXP protease
YP_001340586.1	KEGG: sde:Sde_1610 endopeptidase La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase
YP_001340587.1	PFAM: histone family protein DNA-binding protein; KEGG: maq:Maqu_1837 histone family protein DNA-binding protein
YP_001340588.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: hch:HCH_02164 parvulin-like peptidyl-prolyl isomerase
YP_001340589.1	KEGG: dde:Dde_2987 transposase
YP_001340590.1	PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3340 integrase, catalytic region
YP_001340591.1	TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: sfr:Sfri_0639 Dyp-type peroxidase family protein
YP_001340592.1	KEGG: lpf:lpl2765 hypothetical protein
YP_001340593.1	PFAM: TPR repeat-containing protein; von Willebrand factor type A; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: vpa:VPA1455 hypothetical protein
YP_001340594.1	PFAM: von Willebrand factor type A; KEGG: mca:MCA3085 BatB protein, putative
YP_001340596.1	PFAM: protein of unknown function DUF58; KEGG: vpa:VPA1452 hypothetical protein
YP_001340597.1	PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: vfi:VFA0678 MoxR protein
YP_001340598.1	KEGG: sde:Sde_1749 hypothetical protein
YP_001340599.1	PFAM: dihydroorotate dehydrogenase; KEGG: sde:Sde_1750 DNA topoisomerase I
YP_001340600.1	catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA
YP_001340601.1	TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; KEGG: pau:PA14_56060 formyltetrahydrofolate deformylase
YP_001340603.1	PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: ilo:IL0619.1 Il-IS_3, transposase
YP_001340605.1	PFAM: transposase IS4 family protein; KEGG: pin:Ping_1395 transposase IS4 family protein
YP_001340608.1	TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: pha:PSHAb0172 antitoxin of toxin-antitoxin stability system
YP_001340609.1	PFAM: plasmid stabilization system; KEGG: vvu:VV1_2433 plasmid stabilization system protein
YP_001340610.1	KEGG: vfi:VF0611 hypothetical protein
YP_001340611.1	PFAM: protein of unknown function DUF446; KEGG: sde:Sde_2380 glyoxalase I
YP_001340612.1	PFAM: Domain of unknown function DUF1853; KEGG: hch:HCH_04593 hypothetical protein
YP_001340613.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: gsu:GSU2016 sensory box/GGDEF family protein
YP_001340614.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dar:Daro_3178 rRNA (guanine-N1-)-methyltransferase, putative
YP_001340615.1	PFAM: carbonic anhydrase; KEGG: aha:AHA_0375 carbonic anhydrase
YP_001340616.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pha:PSHAa1822 transcriptional regulator
YP_001340617.1	PFAM: N-acylglucosamine 2-epimerase; KEGG: xcv:XCV1601 hypothetical protein
YP_001340618.1	PFAM: ROK family protein; KEGG: bxe:Bxe_B0891 ROK
YP_001340619.1	PFAM: sigma-54 factor interaction domain-containing protein; KEGG: plu:plu2580 transcriptional regulatory protein TyrR
YP_001340620.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; KEGG: cpe:CPE0820 conserved hypothetical protein
YP_001340621.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: gsu:GSU2753 sigma-54 dependent DNA-binding response regulator
YP_001340622.1	PFAM: extracellular solute-binding protein family 3; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gsu:GSU2755 periplasmic substrate-binding protein/sensor histidine kinase
YP_001340623.1	PFAM: transposase IS3/IS911 family protein; KEGG: pau:PA14_51620 possible transposase
YP_001340624.1	PFAM: Integrase catalytic region; KEGG: pae:PA0978 hypothetical protein
YP_001340625.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: sit:TM1040_1252 TRAP transporter solute receptor, TAXI family
YP_001340626.1	TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sit:TM1040_1251 TRAP transporter, 4TM/12TM fusion protein
YP_001340627.1	PFAM: HopJ type III effector protein; KEGG: vvu:VV2_0452 hypothetical protein
YP_001340628.1	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ppr:PBPRA1545 putative multidrug resistance protein
YP_001340629.1	PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRB0255 putative ABC-type multidrug transport system, ATPase and permease component
YP_001340630.1	PFAM: small multidrug resistance protein; KEGG: sec:SC1647 putative membrane transporter of cations
YP_001340631.1	PFAM: periplasmic binding protein; KEGG: maq:Maqu_3293 periplasmic binding protein
YP_001340632.1	PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: hch:HCH_00269 glycosidase
YP_001340633.1	KEGG: hch:HCH_00270 glycosyltransferase involved in cell wall biogenesis
YP_001340634.1	catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate
YP_001340635.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: sfr:Sfri_1346 protein of unknown function DUF6, transmembrane
YP_001340636.1	KEGG: vei:Veis_4659 hypothetical protein
YP_001340638.1	PFAM: NUDIX hydrolase; KEGG: tfu:Tfu_0229 putative MutT family protein
YP_001340639.1	KEGG: pat:Patl_0907 protein of unknown function DUF1568
YP_001340640.1	KEGG: vvy:VV2188 hypothetical protein
YP_001340641.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bur:Bcep18194_A4380 GCN5-related N-acetyltransferase
YP_001340642.1	TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: vvu:VV1_2432 antitoxin of toxin-antitoxin stability system
YP_001340643.1	PFAM: plasmid stabilization system; KEGG: vvu:VV1_2433 plasmid stabilization system protein
YP_001340644.1	TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: sfr:Sfri_1665 putative adenylyl cyclase CyaB
YP_001340645.1	KEGG: stm:STM0295 putative cytoplasmic protein
YP_001340646.1	KEGG: son:SO2037 site-specific recombinase, phage integrase family
YP_001340647.1	PFAM: phage integrase family protein; KEGG: maq:Maqu_0978 phage integrase family protein
YP_001340648.1	PFAM: putative transposase; KEGG: maq:Maqu_0979 putative transposase
YP_001340650.1	KEGG: hch:HCH_05766 preprotein translocase subunit SecA (ATPase, RNA helicase)
YP_001340651.1	KEGG: ppr:PBPRB0634 hypothetical protein
YP_001340652.1	PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bam:Bamb_0707 aminotransferase, class V
YP_001340656.1	KEGG: vpa:VPA1263 hypothetical protein
YP_001340657.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: rru:Rru_A3580 protein of unknown function DUF6, transmembrane
YP_001340658.1	PFAM: Uncharacterized protein UPF0065; KEGG: hch:HCH_01639 hypothetical protein
YP_001340659.1	KEGG: hch:HCH_01640 hypothetical protein
YP_001340660.1	PFAM: protein of unknown function DUF112 transmembrane; KEGG: hch:HCH_01641 hypothetical protein
YP_001340661.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: hch:HCH_01637 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
YP_001340662.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: hch:HCH_01636 signal transduction histidine kinase
YP_001340663.1	KEGG: hch:HCH_01635 ABC-type Fe3+ transport system, periplasmic component
YP_001340664.1	KEGG: stm:STM3325 putative cytoplasmic protein
YP_001340665.1	PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; KEGG: psp:PSPPH_3486 transcriptional regulator
YP_001340666.1	KEGG: pat:Patl_0257 hypothetical protein
YP_001340667.1	KEGG: pat:Patl_0255 hypothetical protein
YP_001340668.1	PFAM: globin; KEGG: pat:Patl_0254 globin
YP_001340669.1	PFAM: permease; KEGG: shn:Shewana3_2333 permease
YP_001340670.1	KEGG: cps:CPS_3356 redox-active disulfide protein 2
YP_001340671.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: hha:Hhal_0074 alkylhydroperoxidase like protein, AhpD family
YP_001340672.1	PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: hch:HCH_04275 TRAP-type mannitol/chloroaromatic compound transport system, large permease component
YP_001340673.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: hch:HCH_04274 TRAP-type mannitol/chloroaromatic compound transport system, small permease component
YP_001340674.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: maq:Maqu_0085 TRAP dicarboxylate transporter-DctP subunit
YP_001340675.1	PFAM: regulatory protein MarR; KEGG: aci:ACIAD1747 putative transcriptionnal regulator (MarR family)
YP_001340676.1	PFAM: class II aldolase/adducin family protein; KEGG: azo:azo1995 conserved hypothetical protein
YP_001340677.1	TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: azo:azo1994 2-dehydropantoate 2-reductase
YP_001340678.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azo:azo2501 ABC transporter ATP-binding protein
YP_001340679.1	PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: azo:azo2502 probable branched-chain amino acid ABC transporter
YP_001340680.1	PFAM: inner-membrane translocator; KEGG: azo:azo1991 ABC transporter permease protein
YP_001340681.1	PFAM: Extracellular ligand-binding receptor; KEGG: azo:azo1990 putative Leu/Ile/Val-binding protein
YP_001340682.1	PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: rpb:RPB_3894 acyl-CoA dehydrogenase-like
YP_001340683.1	KEGG: rha:RHA1_ro02840 hypothetical protein
YP_001340684.1	KEGG: bch:Bcen2424_3613 hypothetical protein
YP_001340685.1	PFAM: ring hydroxylating dioxygenase alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: rpb:RPB_3895 ring hydroxylating dioxygenase, Rieske (2Fe-2S) protein
YP_001340686.1	PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: rpb:RPB_3896 aromatic-ring-hydroxylating dioxygenase, beta subunit
YP_001340687.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpb:RPB_3897 short-chain dehydrogenase/reductase SDR
YP_001340688.1	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: rfr:Rfer_0281 ferredoxin
YP_001340689.1	PFAM: flavin reductase domain protein FMN-binding; KEGG: pfo:Pfl_0712 flavin reductase-like, FMN-binding
YP_001340690.1	PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: reu:Reut_B3845 (S)-2-hydroxy-acid oxidase
YP_001340691.1	PFAM: Amidase; KEGG: rha:RHA1_ro02850 probable indoleacetamide hydrolase
YP_001340692.1	SMART: helix-turn-helix- domain containing protein AraC type; KEGG: vvy:VV1562 AraC-type DNA-binding domain-containing protein
YP_001340693.1	PFAM: aldehyde dehydrogenase; KEGG: bmb:BruAb2_1092 aldehyde dehydrogenase family protein
YP_001340694.1	SMART: helix-turn-helix- domain containing protein AraC type; KEGG: vvy:VV1562 AraC-type DNA-binding domain-containing protein
YP_001340695.1	PFAM: chemotaxis sensory transducer; KEGG: vfi:VF0872 methyl-accepting chemotaxis protein
YP_001340696.1	PFAM: amino acid permease-associated region; KEGG: cps:CPS_2040 amino acid permease family protein
YP_001340697.1	PFAM: FAD dependent oxidoreductase; KEGG: vvy:VV1566 hypothetical protein
YP_001340698.1	PFAM: Endoribonuclease L-PSP; KEGG: vvy:VV1565 putative translation initiation inhibitor
YP_001340699.1	catalyzes the formation of L-proline from L-ornithine
YP_001340700.1	PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: maq:Maqu_1035 RimK domain protein ATP-grasp
YP_001340701.1	PFAM: GCN5-related N-acetyltransferase; KEGG: sde:Sde_2914 pectic acid lyase
YP_001340702.1	PFAM: GCN5-related N-acetyltransferase; KEGG: wsu:WS1543 conserved hypothetical protein-acetyltransferase, including N-acetylase of ribosomal proteins
YP_001340703.1	PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rso:RS05504 putative low specificity L-threonine aldolase protein
YP_001340704.1	PFAM: band 7 protein; KEGG: pat:Patl_0198 band 7 protein
YP_001340705.1	PFAM: protein of unknown function DUF107; KEGG: pin:Ping_1879 inner membrane protein DUF107
YP_001340706.1	KEGG: pat:Patl_2620 hypothetical protein
YP_001340707.1	KEGG: gsu:GSU0055 hypothetical protein
YP_001340708.1	PFAM: major facilitator superfamily MFS_1; KEGG: vch:VC1071 transporter, putative
YP_001340709.1	TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: sdn:Sden_3551 glyceraldehyde-3-phosphate dehydrogenase, type I
YP_001340710.1	PFAM: regulatory protein ArsR; KEGG: shw:Sputw3181_2926 regulatory protein, ArsR
YP_001340711.1	PFAM: UspA domain protein; KEGG: shw:Sputw3181_0409 UspA domain protein
YP_001340712.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: sfr:Sfri_0790 sulphate transporter
YP_001340713.1	PFAM: Hemolysin-type calcium-binding region; SMART: PKD domain containing protein; KEGG: shm:Shewmr7_3642 putative outer membrane adhesin like protein
YP_001340714.1	TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: csa:Csal_1866 peptide methionine sulfoxide reductase
YP_001340715.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ppr:PBPRA0256 putative transcriptional repressor, LacI family
YP_001340716.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bxe:Bxe_A3673 ABC sugar transporter, periplasmic ligand binding protein
YP_001340717.1	PFAM: inner-membrane translocator; KEGG: ssp:SSP1393 ribose ABC transporter
YP_001340718.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0204 ABC-type sugar (aldose) transport system, ATPase component
YP_001340719.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: atc:AGR_L_3163 hypothetical protein
YP_001340720.1	PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel; KEGG: atc:AGR_L_986 hypothetical protein
YP_001340721.1	KEGG: csa:Csal_1899 hypothetical protein
YP_001340722.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pat:Patl_1702 diguanylate cyclase
YP_001340723.1	KEGG: hch:HCH_05440 predicted small integral membrane protein
YP_001340724.1	periplasmic substrate-binding component of the ATP-dependent xylose transport system; high affinity
YP_001340725.1	TIGRFAM: D-xylose ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRA0463 putative D-xylose transport ATP-binding protein xylG
YP_001340726.1	PFAM: inner-membrane translocator; KEGG: yps:YPTB3888 ABC xylose transporter, fused permease domains
YP_001340727.1	TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: pin:Ping_0224 xylulokinase
YP_001340728.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: eca:ECA0101 xylose operon regulatory protein
YP_001340729.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ppr:PBPRB1561 putative ribose operon repressor, rbsR
YP_001340730.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: yps:YPTB0812 ABC transporter, periplasmic sugar binding protein
YP_001340731.1	KEGG: yen:YE0819 putative lipoprotein
YP_001340732.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ypn:YPN_0777 sugar ABC transporter, ATP-binding protein
YP_001340733.1	PFAM: inner-membrane translocator; KEGG: yen:YE0821 putative sugar ABC transporter, permease protein
YP_001340734.1	PFAM: RbsD or FucU transport; KEGG: bxe:Bxe_C1273 sugar binding or transport, RbsD/FucU
YP_001340735.1	catalyzes the interconversion of D-xylose to D-xylulose
YP_001340736.1	KEGG: sma:SAV494 hypothetical protein
YP_001340737.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bsu:BG11467 similar to hypothetical proteins
YP_001340738.1	TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bha:BH2945 hypothetical protein
YP_001340739.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: wsu:WS0748 immunogenic protein
YP_001340740.1	TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: pha:PSHAa0159 aconitate hydratase
YP_001340741.1	KEGG: pat:Patl_0883 hypothetical protein
YP_001340742.1	PFAM: regulatory protein LuxR; KEGG: bur:Bcep18194_B1619 transcriptional regulator, LuxR family
YP_001340743.1	KEGG: maq:Maqu_2911 hypothetical protein
YP_001340745.1	PFAM: monooxygenase FAD-binding; KEGG: cps:CPS_3257 monooxygenase family protein
YP_001340746.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: eca:ECA3851 hypothetical protein
YP_001340747.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_001340748.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; extracellular solute-binding protein family 3; KEGG: pin:Ping_0979 sensor histidine kinase with ATPase domain, two fused
YP_001340749.1	PFAM: protein of unknown function DUF583; KEGG: ppr:PBPRA0655 hypothetical Ccm2-related protein
YP_001340750.1	PFAM: peptidase M23B; KEGG: vch:VCA1043 TagE protein
YP_001340751.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: tcx:Tcr_1015 DEAD/DEAH box helicase-like
YP_001340752.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: ppr:PBPRB1023 hypothetical ribosomal small subunit pseudouridine synthase A
YP_001340753.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: sme:SMc01324 putative oxidoreductase protein
YP_001340754.1	converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer
YP_001340755.1	KEGG: pna:Pnap_0619 putative flavoprotein involved in K+ transport
YP_001340756.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: azo:azo3875 sigma-54-dependent transcriptional regulator
YP_001340757.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tcx:Tcr_1021 diguanylate cyclase (GGDEF domain)
YP_001340758.1	PFAM: glutaredoxin; KEGG: pat:Patl_2410 glutaredoxin
YP_001340759.1	KEGG: sfr:Sfri_3620 hypothetical protein
YP_001340760.1	PFAM: protein of unknown function DUF984; KEGG: vvu:VV1_2528 hypothetical protein
YP_001340761.1	PFAM: EAL domain protein; KEGG: pha:PSHAa2203 hypothetical protein
YP_001340762.1	PFAM: NADPH-dependent FMN reductase; KEGG: abo:ABO_1539 hypothetical protein
YP_001340763.1	PFAM: sodium:dicarboxylate symporter; KEGG: saz:Sama_2768 proton/glutamate symporter
YP_001340764.1	PFAM: fumarate lyase; KEGG: pst:PSPTO_5499 aspartate ammonia-lyase
YP_001340765.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: ade:Adeh_1758 two component, sigma54 specific, transcriptional regulator, fis family
YP_001340766.1	PFAM: extracellular solute-binding protein family 3; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gsu:GSU2755 periplasmic substrate-binding protein/sensor histidine kinase
YP_001340767.1	PFAM: Domain of unknown function DUF1791; KEGG: chy:CHY_1266 hypothetical protein
YP_001340768.1	TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: pcr:Pcryo_0452 amino acid carrier protein
YP_001340769.1	PFAM: protein of unknown function DUF112 transmembrane; KEGG: csa:Csal_0165 protein of unknown function DUF112, transmembrane
YP_001340770.1	PFAM: Uncharacterized protein UPF0065; KEGG: csa:Csal_0164 uncharacterized protein UPF0065
YP_001340771.1	PFAM: protein of unknown function DUF453; KEGG: csa:Csal_0163 protein of unknown function DUF453
YP_001340772.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: csa:Csal_0162 transcriptional regulator, LysR family
YP_001340773.1	KEGG: shw:Sputw3181_1042 histidine kinase
YP_001340774.1	PFAM: sulfatase; KEGG: sdn:Sden_3562 sulfatase
YP_001340775.1	PFAM: sulfatase; protein of unknown function DUF1705; KEGG: vpa:VPA1280 putative membrane protein
YP_001340776.1	KEGG: pha:PSHAa1073 hypothetical protein
YP_001340777.1	KEGG: ppr:PBPRA2510 conserved hypothetical protein
YP_001340778.1	PFAM: PepSY-associated TM helix domain protein; KEGG: eca:ECA1775 putative iron-regulated membrane protein
YP_001340779.1	KEGG: plu:plu3520 hypothetical protein
YP_001340780.1	KEGG: saz:Sama_0845 conserved hypothetical protein
YP_001340781.1	TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; KEGG: mmr:Mmar10_1236 adenosine deaminase
YP_001340782.1	PFAM: basic membrane lipoprotein; KEGG: hch:HCH_01504 uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein
YP_001340783.1	PFAM: inner-membrane translocator; KEGG: hch:HCH_01103 uncharacterized ABC-type transport system, permease component
YP_001340784.1	PFAM: inner-membrane translocator; KEGG: hch:HCH_01102 ABC-type uncharacterized transport system, permease component
YP_001340785.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_01101 ABC-type uncharacterized transport system, ATPase components
YP_001340787.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: gsu:GSU0952 GGDEF domain protein
YP_001340788.1	TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; PFAM: pseudouridine synthase; KEGG: pat:Patl_1363 pseudouridine synthase Rlu family protein, TIGR01621
YP_001340789.1	KEGG: hso:HS_0496 conserved hypothetical protein
YP_001340790.1	PFAM: Peptidoglycan-binding domain 1 protein; KEGG: hch:HCH_04383 hypothetical protein
YP_001340791.1	PFAM: protein of unknown function UPF0153; KEGG: ilo:IL0230 Fe-S-cluster domain
YP_001340792.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: hch:HCH_06018 response regulator containing a CheY-like receiver domain and a GGDEF domain
YP_001340793.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_001340794.1	TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase; KEGG: pfo:Pfl_0836 glutamyl-tRNA(Gln) amidotransferase A subunit
YP_001340795.1	TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: psp:PSPPH_4173 glutamyl-tRNA(Gln) amidotransferase, C subunit
YP_001340796.1	functions in MreBCD complex in some organisms
YP_001340797.1	TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: pfl:PFL_0897 rod shape-determining protein MreC
YP_001340798.1	PFAM: Rod shape-determining protein MreD; KEGG: aeh:Mlg_0171 rod shape-determining protein MreD
YP_001340799.1	TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: ppu:PP_0936 maf protein
YP_001340800.1	TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: csa:Csal_2236 ribonuclease, Rne/Rng family
YP_001340801.1	KEGG: psp:PSPPH_4166 conserved hypothetical protein TIGR02099
YP_001340802.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: hch:HCH_05328 predicted amidohydrolase
YP_001340803.1	KEGG: mpe:MYPE1680 hypothetical protein
YP_001340804.1	PFAM: major facilitator superfamily MFS_1; KEGG: xfa:XF1749 transcriptional regulator
YP_001340805.1	PFAM: peptidase S15; KEGG: rle:pRL110145 hypothetical protein
YP_001340806.1	PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: rso:RSc0625 probable transcription regulator protein
YP_001340807.1	PFAM: Endonuclease I; KEGG: hch:HCH_00124 endonuclease I
YP_001340809.1	PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: nha:Nham_4367 fructose-6-phosphate phosphoketolase
YP_001340810.1	PFAM: fructose-bisphosphate aldolase class-I; KEGG: plt:Plut_0519 fructose-bisphosphate aldolase
YP_001340811.1	PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bxe:Bxe_B1342 hypothetical protein
YP_001340812.1	catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate
YP_001340813.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_001340814.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_001340815.1	TIGRFAM: F0F1-ATPase subunit, putative; KEGG: sfr:Sfri_3051 F0F1-ATPase subunit, putative
YP_001340816.1	KEGG: sfr:Sfri_3052 hypothetical protein
YP_001340817.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_001340818.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0
YP_001340819.1	PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: sfr:Sfri_3055 H(+)-transporting ATP synthase, subunit B
YP_001340820.1	produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit
YP_001340821.1	PFAM: H+transporting two-sector ATPase gamma subunit; KEGG: sfr:Sfri_3057 H+transporting two-sector ATPase, gamma subunit
YP_001340822.1	SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: net:Neut_0491 transcriptional regulator, Crp/Fnr family protein
YP_001340823.1	PFAM: heat shock protein DnaJ domain protein; KEGG: mca:MCA1727 curved DNA-binding protein
YP_001340824.1	TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: rru:Rru_A1547 hypothetical protein
YP_001340825.1	KEGG: bxe:Bxe_C0556 hypothetical protein
YP_001340826.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bxe:Bxe_C0527 putative zinc-containing alcohol dehydrogenase
YP_001340827.1	PFAM: NAD(P) transhydrogenase beta subunit; KEGG: bxe:Bxe_C0526 putative NAD(P) transhydrogenase beta subunit
YP_001340828.1	KEGG: bxe:Bxe_C0525 putative NAD(P) transhydrogenase alpha-2 subunit
YP_001340829.1	PFAM: alanine dehydrogenase/PNT domain protein; KEGG: bxe:Bxe_C0524 putative NAD(P) transhydrogenase alpha-1 subunit
YP_001340830.1	PFAM: aldehyde dehydrogenase; KEGG: bxe:Bxe_B2363 putative aldehyde dehydrogenase
YP_001340831.1	KEGG: shw:Sputw3181_2242 hypothetical protein
YP_001340832.1	PFAM: OmpA/MotB domain protein; KEGG: shw:Sputw3181_2243 OmpA/MotB domain protein
YP_001340833.1	PFAM: C4-dicarboxylate anaerobic carrier; KEGG: mes:Meso_2242 C4-dicarboxylate anaerobic carrier
YP_001340834.1	catalyzes the degradation of arginine to citruline and ammonia
YP_001340835.1	TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: cvi:CV3781 ornithine carbamoyltransferase
YP_001340836.1	KEGG: pin:Ping_2355 uncharacterized conserved coiled coil protein
YP_001340837.1	PFAM: NHL repeat containing protein; KEGG: rfr:Rfer_2727 L-sorbosone dehydrogenase
YP_001340838.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: ana:all7610 cation efflux system protein
YP_001340839.1	PFAM: peptidase S24 S26A and S26B; KEGG: shw:Sputw3181_1083 putative prophage repressor
YP_001340840.1	PFAM: UMUC domain protein DNA-repair protein; KEGG: shw:Sputw3181_1082 DNA-directed DNA polymerase
YP_001340841.1	TIGRFAM: Addiction module antidote protein HI1420; KEGG: blo:BL1325 narrowly conserved hypothetical protein with possible DNA interaction motif
YP_001340842.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: hch:HCH_02466 transcriptional regulator
YP_001340843.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: hch:HCH_02467 ABC-type sugar transport system, periplasmic component
YP_001340844.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_02469 ABC-type sugar transport system, ATPase component
YP_001340845.1	PFAM: inner-membrane translocator; KEGG: hch:HCH_02470 ribose/xylose/arabinose/galactoside ABC-type transport system, permease components
YP_001340846.1	PFAM: carbohydrate kinase FGGY; KEGG: hch:HCH_02472 sugar (pentulose and hexulose) kinase
YP_001340847.1	TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: psb:Psyr_2435 xylulokinase
YP_001340848.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bur:Bcep18194_B0889 short chain dehydrogenase
YP_001340849.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll6662 ribitol 2-dehydrogenase
YP_001340850.1	PFAM: sodium/hydrogen exchanger; KEGG: pcr:Pcryo_0534 sodium/hydrogen exchanger
YP_001340851.1	PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sil:SPO3735 major facilitator family protein
YP_001340852.1	TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: sme:SMc00182 putative transcription regulator protein
YP_001340853.1	KEGG: sfr:Sfri_2034 hypothetical protein
YP_001340854.1	TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: pca:Pcar_2713 magnesium and cobalt transport protein CorA
YP_001340855.1	PFAM: protein of unknown function DUF125 transmembrane; KEGG: pin:Ping_1569 hypothetical protein DUF125
YP_001340856.1	KEGG: sde:Sde_1986 hypothetical protein
YP_001340857.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: aci:ACIAD0422 hypothetical protein
YP_001340858.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bch:Bcen2424_4882 transcriptional regulator, LysR family
YP_001340859.1	catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding
YP_001340860.1	PFAM: dienelactone hydrolase; KEGG: hne:HNE_2027 dienelactone hydrolase family protein
YP_001340861.1	PFAM: secretion protein HlyD family protein; KEGG: pae:PA5159 multidrug resistance protein
YP_001340862.1	PFAM: major facilitator superfamily MFS_1; KEGG: cvi:CV1078 multidrug resistence transmembrane protein
YP_001340863.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sdn:Sden_3747 LysR, substrate-binding
YP_001340864.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PB00147 probable sugar ABC transporter, ATP-binding protein
YP_001340865.1	PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: atc:AGR_C_1276 hypothetical protein
YP_001340866.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pin:Ping_2010 ABC transporter substrate binding inner membrane protein
YP_001340867.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pin:Ping_2009 ABC sugar transporter inner membrane binding protein
YP_001340868.1	PFAM: glycoside hydrolase clan GH-D; KEGG: eca:ECA0754 alpha-galactosidase
YP_001340869.1	PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: pat:Patl_0898 2-keto-3-deoxy-galactonokinase
YP_001340870.1	PFAM: KDPG and KHG aldolase; KEGG: eci:UTI89_C4415 hypothetical protein
YP_001340871.1	PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: psp:PSPPH_2505 senescence marker protein-30 family protein
YP_001340872.1	PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: tma:TM1195 beta-galactosidase
YP_001340873.1	PFAM: extracellular solute-binding protein family 1; KEGG: pin:Ping_2008 ABC transporter extracellular solute-binding protein, family 1
YP_001340874.1	PFAM: extracellular solute-binding protein family 5; KEGG: vch:VCA1098 peptide transport system substrate-binding protein
YP_001340875.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vch:VCA1099 peptide transport system permease protein
YP_001340876.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vch:VCA1100 peptide transport system permease protein
YP_001340877.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pde:Pden_1344 ABC transporter related
YP_001340879.1	KEGG: mgm:Mmc1_2953 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_001340880.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: azo:azo2059 probable REC/GGDEF-domain containing protein
YP_001340881.1	TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: maq:Maqu_1732 2-isopropylmalate synthase
YP_001340882.1	PFAM: regulatory protein AsnC/Lrp family; KEGG: maq:Maqu_1733 putative transcriptional regulator, AsnC family
YP_001340883.1	catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate
YP_001340884.1	TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B0025 drug resistance transporter, EmrB/QacA subfamily
YP_001340885.1	PFAM: regulatory protein TetR; KEGG: bur:Bcep18194_B0024 transcriptional regulator, TetR family
YP_001340886.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sbo:SBO_2606 ATP-dependent RNA helicase
YP_001340887.1	PFAM: protein of unknown function DUF1415; KEGG: lpn:lpg2266 hypothetical protein
YP_001340888.1	KEGG: pin:Ping_1452 RNA binding S1 domain protein
YP_001340889.1	TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; KEGG: ppr:PBPRA0812 hypothetical 2-dehydropantoate 2-reductase
YP_001340890.1	PFAM: protein of unknown function DUF520; KEGG: xac:XAC3671 hypothetical protein
YP_001340891.1	PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: vfi:VF1575 O6-methylguanine-DNA methyltransferase
YP_001340892.1	PFAM: FxsA cytoplasmic membrane protein; KEGG: saz:Sama_0540 FxsA cytoplasmic membrane protein
YP_001340893.1	PFAM: chaperonin Cpn10; KEGG: maq:Maqu_2031 chaperonin Cpn10
YP_001340894.1	TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: ppu:PP_1361 chaperonin, 60 kDa
YP_001340895.1	PFAM: EAL domain protein; KEGG: cps:CPS_2600 EAL domain protein
YP_001340896.1	KEGG: hha:Hhal_1807 putative membrane protein; K07288 uncharacterized membrane protein
YP_001340897.1	TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; KEGG: pen:PSEEN1689 tRNA-pseudouridine synthase I
YP_001340898.1	PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: pfo:Pfl_1897 N-(5'-phosphoribosyl)anthranilate isomerase
YP_001340899.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_001340900.1	TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain; KEGG: maq:Maqu_1557 tryptophan synthase, alpha subunit
YP_001340901.1	TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: maq:Maqu_1556 acetyl-CoA carboxylase, carboxyl transferase, beta subunit
YP_001340902.1	TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; KEGG: ecs:ECs3199 dihydrofolate:folylpolyglutamate synthetase
YP_001340903.1	PFAM: Sporulation domain protein; KEGG: saz:Sama_2148 sporulation related
YP_001340904.1	PFAM: Colicin V production protein; KEGG: psp:PSPPH_1661 CvpA family protein
YP_001340905.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_001340906.1	TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: csa:Csal_1268 O-succinylhomoserine sulfhydrylase
YP_001340907.1	PFAM: acriflavin resistance protein; KEGG: cps:CPS_4620 AcrB/AcrD/AcrF family protein
YP_001340908.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cps:CPS_4621 efflux transporter, RND family, MFP subunit
YP_001340909.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pau:PA14_25020 putative ABC transporter, ATP-binding protein
YP_001340910.1	KEGG: aav:Aave_3738 hypothetical protein
YP_001340911.1	PFAM: Heat shock protein 70; KEGG: vfi:VF1517 heat shock protein 70
YP_001340912.1	KEGG: hch:HCH_03649 molecular chaperone
YP_001340913.1	PFAM: extracellular solute-binding protein family 5; KEGG: ecp:ECP_4318 putative dipeptide binding periplasmic protein
YP_001340914.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: yen:YE0490 putative transporter, permease protein
YP_001340915.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: psp:PSPPH_2744 ABC transporter, permease protein
YP_001340916.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psp:PSPPH_2745 dipeptide transporter DppD-like protein
YP_001340917.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: yen:YE0487 putative ABC transporter, ATP-binding protein
YP_001340918.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: maq:Maqu_3299 ABC transporter related
YP_001340919.1	PFAM: transport system permease protein; KEGG: maq:Maqu_3298 transport system permease protein
YP_001340920.1	PFAM: transport system permease protein; KEGG: csa:Csal_2700 transport system permease protein
YP_001340921.1	PFAM: periplasmic binding protein; KEGG: csa:Csal_2699 periplasmic binding protein
YP_001340922.1	PFAM: lipase class 3; KEGG: sde:Sde_1065 galactose-1-phosphate uridyl transferase, class I
YP_001340924.1	PFAM: Putative ParB-like nuclease; KEGG: ppr:PBPRA1740 hypothetical protein
YP_001340925.1	PFAM: GCN5-related N-acetyltransferase; KEGG: vfi:VF1344 acetyltransferase
YP_001340926.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: aci:ACIAD1021 putative (R,R)-butanediol dehydrogenase
YP_001340927.1	PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: pin:Ping_2597 multiple antibiotic resistance (MarC)-related proteins
YP_001340928.1	TIGRFAM: regulator of ribonuclease activity A; PFAM: Dimethylmenaquinone methyltransferase; KEGG: pfl:PFL_1871 protein of unknown function, TIGR01935
YP_001340929.1	KEGG: hch:HCH_04960 hypothetical protein
YP_001340930.1	PFAM: peptidase M14 carboxypeptidase A; KEGG: cps:CPS_2558 zinc carboxypeptidase family protein
YP_001340931.1	PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: csa:Csal_1078 hypothetical protein
YP_001340932.1	Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein
YP_001340933.1	TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: ilo:IL2042 rRNA methyltransferase, TrmH family
YP_001340934.1	PFAM: heat shock protein DnaJ domain protein; KEGG: bta:614588 hypothetical LOC614588
YP_001340935.1	PFAM: GGDEF domain containing protein; EAL domain protein; Diverse 7TM receptor transmembrane region; KEGG: hch:HCH_00783 predicted signal transduction protein containing sensor and EAL domains
YP_001340936.1	TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: psp:PSPPH_1122 molybdenum cofactor biosynthesis protein C
YP_001340937.1	PFAM: thiamineS protein; KEGG: rma:Rmag_0694 thiamineS protein
YP_001340938.1	PFAM: molybdopterin biosynthesis MoaE protein; KEGG: vfi:VF0943 molybdopterin converting factor, large subunit
YP_001340939.1	PFAM: phage integrase family protein; KEGG: lpf:lpl1829 hypothetical protein
YP_001340942.1	PFAM: peptidase M48 Ste24p; KEGG: csa:Csal_2820 peptidase M48, Ste24p
YP_001340943.1	PFAM: SirA family protein; KEGG: maq:Maqu_1694 SirA family protein
YP_001340944.1	PFAM: protein of unknown function UPF0118; KEGG: pau:PA14_51300 hypothetical protein
YP_001340945.1	PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: hch:HCH_00480 glycosidase
YP_001340946.1	PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: dar:Daro_0860 nucleoside:H+ symporter:major facilitator superfamily MFS_1
YP_001340947.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppu:PP_1984 transcriptional regulator, LysR family
YP_001340948.1	TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; KEGG: hch:HCH_02428 3-isopropylmalate dehydratase large subunit
YP_001340949.1	TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: maq:Maqu_1564 3-isopropylmalate dehydratase, small subunit
YP_001340950.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_001340951.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_001340952.1	PFAM: protein of unknown function DUF1275; KEGG: pat:Patl_1589 protein of unknown function DUF1275
YP_001340953.1	TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: hch:HCH_05322 ribosome-associated protein Y (PSrp-1)
YP_001340954.1	catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate
YP_001340955.1	PFAM: protein of unknown function DUF323; KEGG: gsu:GSU0897 hypothetical protein
YP_001340956.1	PFAM: tRNA--hydroxylase; KEGG: abo:ABO_1203 tRNA-(ms(2)io(6)a)-hydroxylase
YP_001340958.1	PFAM: sodium:neurotransmitter symporter; KEGG: maq:Maqu_2879 sodium:neurotransmitter symporter
YP_001340959.1	TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; KEGG: sde:Sde_1900 UDP-2,3-diacylglucosamine hydrolase
YP_001340960.1	PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: pau:PA14_41390 peptidyl-prolyl cis-trans isomerase B
YP_001340961.1	KEGG: csa:Csal_2039 hypothetical protein
YP_001340962.1	TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: pat:Patl_2961 ExsB protein
YP_001340963.1	PFAM: GCN5-related N-acetyltransferase; regulatory protein MarR; KEGG: bba:Bd1451 transcriptional regulator, MarR family
YP_001340964.1	PFAM: AzlC family protein; KEGG: hch:HCH_00878 predicted branched-chain amino acid permease (azaleucine resistance)
YP_001340965.1	PFAM: branched-chain amino acid transport; KEGG: bxe:Bxe_A1047 hypothetical protein
YP_001340966.1	catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001340967.1	TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia; KEGG: csa:Csal_2051 cysteinyl-tRNA synthetase
YP_001340968.1	PFAM: UspA domain protein; KEGG: maq:Maqu_1142 UspA domain protein
YP_001340969.1	KEGG: pau:PA14_25050 hypothetical protein
YP_001340971.1	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity
YP_001340974.1	TIGRFAM: LexA repressor; PFAM: peptidase S24 S26A and S26B; LexA DNA-binding domain protein; KEGG: hch:HCH_02068 LexA repressor
YP_001340975.1	helicase involved in DNA repair and perhaps also replication
YP_001340976.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pen:PSEEN4527 ATP-dependent RNA helicase RhlB
YP_001340977.1	PFAM: protein of unknown function UPF0061; KEGG: vch:VC1931 hypothetical protein
YP_001340978.1	PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: hch:HCH_02763 glycerol-3-phosphate dehydrogenase
YP_001340979.1	KEGG: sde:Sde_2097 glucose-1-phosphate thymidylyltransferase, long form
YP_001340980.1	TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: pau:PA14_43620 putative phosphohistidine phosphatase SixA
YP_001340981.1	PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: pst:PSPTO_2218 hydrolase, alpha/beta fold family
YP_001340982.1	KEGG: psb:Psyr_2028 hypothetical protein
YP_001340983.1	PFAM: Patatin; KEGG: hch:HCH_02419 predicted esterase of the alpha-beta hydrolase superfamily
YP_001340984.1	TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: sgl:SG1054 hypothetical protein
YP_001340985.1	PFAM: protein of unknown function DUF177; KEGG: csa:Csal_1597 protein of unknown function DUF177
YP_001340986.1	TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: ilo:IL1344 ribosomal protein L32
YP_001340987.1	PFAM: fatty acid synthesis plsX protein; KEGG: pol:Bpro_3651 fatty acid/phospholipid synthesis protein PlsX
YP_001340988.1	TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: ppr:PBPRA1194 putative malonyl Coa-acyl carrier protein transacylase
YP_001340989.1	TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: vch:VC2021 3-oxoacyl-[acyl-carrier protein] reductase
YP_001340990.1	TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: aha:AHA_2252 acyl carrier protein
YP_001340991.1	PFAM: Beta-ketoacyl synthase; KEGG: csa:Csal_1603 beta-ketoacyl synthase
YP_001340992.1	KEGG: pen:PSEEN1593 hypothetical protein
YP_001340993.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sde:Sde_1170 ribosomal protein S16
YP_001340994.1	PFAM: ABC-2 type transporter; KEGG: hch:HCH_04490 ABC-type multidrug transport system, permease component
YP_001340995.1	catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis
YP_001340996.1	PFAM: Auxin Efflux Carrier; KEGG: pae:PA0188 hypothetical protein
YP_001340997.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vch:VCA1058 transcriptional regulator, LysR family
YP_001340998.1	PFAM: aldo/keto reductase; KEGG: pin:Ping_2668 aldo/keto reductase
YP_001340999.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: chu:CHU_1893 bacterioferritin comigratory protein
YP_001341000.1	TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: hch:HCH_04906 dihydrodipicolinate synthase
YP_001341002.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_001341003.1	TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: hch:HCH_02350 ABC-type transport system, involved in lipoprotein release, permease component
YP_001341004.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sde:Sde_1810 putative ATP-binding component of ABC transporter
YP_001341005.1	KEGG: tcx:Tcr_0956 hypothetical protein
YP_001341006.1	PFAM: ComEC/Rec2-related protein; KEGG: pha:PSHAa1662 DNA internalization-related competence protein ComEC/Rec2 with metallo-beta-lactamase superfamily domain
YP_001341007.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: hch:HCH_02700 biopolymer transport protein
YP_001341008.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: maq:Maqu_1742 biopolymer transport protein ExbD/TolR
YP_001341009.1	TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; KEGG: pat:Patl_1781 tetraacyldisaccharide 4'-kinase
YP_001341010.1	PFAM: protein of unknown function DUF343; KEGG: ppu:PP_1901 hypothetical protein
YP_001341011.1	PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: vch:VC1041 phosphotyrosine protein phosphatase
YP_001341012.1	TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; KEGG: aha:AHA_4041 UDP-N-acetylenolpyruvoylglucosamine reductase
YP_001341013.1	TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase; KEGG: cps:CPS_1257 glutamate racemase
YP_001341014.1	PFAM: Patatin; KEGG: sde:Sde_1888 hypothetical protein
YP_001341015.1	catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_001341016.1	catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate
YP_001341017.1	KEGG: shn:Shewana3_3323 spermine synthase
YP_001341018.1	PFAM: FAD linked oxidase domain protein; KEGG: sde:Sde_2371 electron transport complex, RnfABCDGE type, G subunit
YP_001341019.1	KEGG: pat:Patl_0753 D-cysteine desulfhydrase, PLP-dependent enzyme
YP_001341020.1	PFAM: ATP-NAD/AcoX kinase; KEGG: hch:HCH_04592 predicted sugar kinase
YP_001341021.1	PFAM: Rhomboid family protein; KEGG: psb:Psyr_1687 rhomboid-like protein
YP_001341022.1	PFAM: protein of unknown function DUF1315; KEGG: pau:PA14_24245 hypothetical protein
YP_001341023.1	KEGG: pfl:PFL_3282 hypothetical protein
YP_001341024.1	TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: ppu:PP_2017 aminopeptidase N
YP_001341025.1	KEGG: ddi:DDB_0191136 actin binding protein
YP_001341026.1	TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase DHPS; homocysteine S-methyltransferase; Methionine synthase B12-binding module cap domain protein; Vitamin B12 dependent methionine synthase activation region; cobalamin B12-binding domain protein; KEGG: cps:CPS_1101 5-methyltetrahydrofolate--homocysteine S-methyltransferase
YP_001341027.1	TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: maq:Maqu_0278 cob(I)alamin adenosyltransferase
YP_001341028.1	PFAM: Endoribonuclease L-PSP; KEGG: vfi:VFA0002 translation initiation inhibitor
YP_001341029.1	PFAM: cyclic nucleotide-binding; KEGG: pol:Bpro_3151 cyclic nucleotide-binding domain (cNMP-BD) protein
YP_001341030.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pat:Patl_1712 ABC transporter related
YP_001341031.1	PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: vfi:VFA0264 oxidoreductase (iron-sulfur cluster biosynthesis)
YP_001341032.1	PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: psp:PSPPH_4273 decarboxylase, ornithine/DAP/arginine decarboxylase family 2
YP_001341033.1	PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: pol:Bpro_4847 protein of unknown function DUF395, YeeE/YedE
YP_001341034.1	PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: pub:SAR11_1258 hypothetical protein
YP_001341035.1	KEGG: she:Shewmr4_2245 hypothetical protein
YP_001341036.1	PFAM: protein of unknown function DUF1332; KEGG: pha:PSHAa2887 hypothetical protein
YP_001341037.1	PFAM: manganese and iron superoxide dismutase; KEGG: pha:PSHAa1215 iron superoxide dismutase
YP_001341038.1	KEGG: sde:Sde_0887 ribosomal protein L11
YP_001341039.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_001341040.1	TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: aci:ACIAD1073 ATP-sulfurylase, subunit 1
YP_001341041.1	PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: shw:Sputw3181_4001 siderophore-interacting protein
YP_001341042.1	PFAM: regulatory protein MarR; KEGG: hch:HCH_03311 transcriptional regulator
YP_001341043.1	KEGG: pin:Ping_2644 GreA/GreB family elongation factor
YP_001341044.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_001341045.1	TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; KEGG: vch:VC1847 crossover junction endodeoxyribonuclease RuvC
YP_001341046.1	TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: RuvA domain protein; DNA recombination protein RuvA domain I; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: pau:PA14_51790 Holliday junction DNA helicase RuvA
YP_001341047.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_001341048.1	TIGRFAM: Tol-Pal system TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: hch:HCH_04919 biopolymer transport protein
YP_001341049.1	TIGRFAM: Biopolymer transport TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: csa:Csal_1851 biopolymer transport protein ExbD/TolR
YP_001341050.1	TIGRFAM: TonB family protein; Tol-Pal system TolA; PFAM: TolA family protein; KEGG: pae:PA0971 TolA protein
YP_001341051.1	forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA
YP_001341052.1	TIGRFAM: Peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: csa:Csal_1854 OmpA/MotB
YP_001341053.1	TIGRFAM: Tol-Pal system YbgF; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_04913 hypothetical protein
YP_001341054.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_001341055.1	KEGG: lpn:lpg2490 LepB
YP_001341056.1	PFAM: nitroreductase; KEGG: pen:PSEEN3911 nitroreductase
YP_001341057.1	KEGG: pat:Patl_2858 hypothetical protein
YP_001341058.1	PFAM: thioesterase superfamily protein; KEGG: cch:Cag_0091 hypothetical protein
YP_001341059.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mag:amb0759 GGDEF domain
YP_001341060.1	PFAM: translation initiation factor SUI1; KEGG: maq:Maqu_2865 translation initiation factor SUI1
YP_001341061.1	PFAM: GCN5-related N-acetyltransferase; KEGG: btk:BT9727_2477 ribosomal-protein-alanine acetyltransferase
YP_001341062.1	PFAM: pseudouridine synthase; KEGG: plu:plu0665 unnamed protein product; highly similar to unknown protein YqcB of Escherichia coli
YP_001341063.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: atc:AGR_pAT_476 hypothetical protein
YP_001341064.1	PFAM: lipolytic protein G-D-S-L family; KEGG: hch:HCH_04953 lysophospholipase L1
YP_001341065.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shn:Shewana3_1538 ABC transporter related
YP_001341066.1	PFAM: protein of unknown function DUF214; KEGG: sde:Sde_3446 ABC transporter, permease protein, putative
YP_001341067.1	Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C
YP_001341068.1	PFAM: TatD-related deoxyribonuclease; KEGG: pin:Ping_0317 TatD-related deoxyribonuclease
YP_001341069.1	PFAM: Metal-dependent hydrolase HDOD; KEGG: lpp:lpp0127 hypothetical protein
YP_001341070.1	PFAM: response regulator receiver; CheW domain protein; KEGG: pen:PSEEN3735 chemotaxis protein CheV
YP_001341071.1	KEGG: vpa:VP0522 hypothetical protein
YP_001341072.1	PFAM: ferrochelatase; KEGG: csa:Csal_0897 ferrochelatase
YP_001341073.1	PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mlo:mlr6523 hypothetical protein
YP_001341075.1	PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: hpj:jhp0108 DNA topoisomerase I
YP_001341076.1	PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; domain of unknown function DUF1731; KEGG: shw:Sputw3181_1620 domain of unknown function DUF1731
YP_001341077.1	PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: hch:HCH_04767 hypothetical protein
YP_001341078.1	KEGG: gme:Gmet_3064 hypothetical protein
YP_001341079.1	KEGG: gme:Gmet_3063 hypothetical protein
YP_001341080.1	KEGG: gme:Gmet_3062 hypothetical protein
YP_001341081.1	PFAM: BolA family protein; KEGG: vvu:VV1_1820 bolA-like protein
YP_001341082.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pha:PSHAa0953 anti-sigma factor antagonist
YP_001341083.1	PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: ilo:IL1713 response regulator of sigma subunit, serine phosphatase (CheY-RsbU)
YP_001341084.1	TIGRFAM: yecA family protein; KEGG: psp:PSPPH_1517 hypothetical protein
YP_001341085.1	TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cvi:CV0477 ATP-dependent DNA helicase recQ
YP_001341086.1	PFAM: protein of unknown function DUF335 SprT; SMART: protein of unknown function SprT; KEGG: son:SO0834 sprT protein, putative
YP_001341087.1	PFAM: PP-loop domain protein; KEGG: abo:ABO_1266 hypothetical protein
YP_001341088.1	KEGG: maq:Maqu_2689 YfaZ family protein
YP_001341089.1	TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: pfo:Pfl_1810 adenine phosphoribosyl transferase
YP_001341090.1	PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: psb:Psyr_3425 cyclic nucleotide-binding:bacterial regulatory protein, Crp
YP_001341091.1	KEGG: ppu:PP_4264 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_001341092.1	KEGG: ret:RHE_PE00063 putative hydrolase protein
YP_001341093.1	PFAM: SirA family protein; KEGG: pen:PSEEN3754 hypothetical protein
YP_001341094.1	PFAM: CBS domain containing protein; KEGG: sfr:Sfri_2693 CBS domain containing protein
YP_001341096.1	PFAM: MaoC domain protein dehydratase; KEGG: MaoC family protein
YP_001341097.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cps:CPS_2291 HAD-superfamily hydrolase, subfamily IA
YP_001341098.1	TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: pfo:Pfl_4163 peptidase S49, SppA
YP_001341099.1	KEGG: mka:MK0771 hypothetical protein
YP_001341100.1	involved in methylation of ribosomal protein L3
YP_001341101.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_001341102.1	pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog
YP_001341103.1	manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily
YP_001341104.1	KEGG: vpa:VPA0446 putative methylamine utilization protein MauG precursor
YP_001341105.1	KEGG: vpa:VPA0445 hypothetical protein
YP_001341106.1	PFAM: Peptidoglycan-binding domain 1 protein; KEGG: vpa:VPA0444 hypothetical protein
YP_001341107.1	PFAM: Radical SAM domain protein; KEGG: vpa:VPA0443 hypothetical protein
YP_001341108.1	PFAM: Radical SAM domain protein; KEGG: vpa:VPA0442 hypothetical protein
YP_001341109.1	PFAM: protein of unknown function UPF0187; KEGG: pen:PSEEN4044 hypothetical protein
YP_001341110.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Cache domain protein; KEGG: eca:ECA3851 hypothetical protein
YP_001341111.1	PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rme:Rmet_5366 major facilitator superfamily MFS_1
YP_001341112.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: abo:ABO_2353 Cu(I)-exporting ATPase
YP_001341113.1	PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: csa:Csal_3005 transcriptional regulator, MerR family
YP_001341114.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pha:PSHAb0118 respiratory NADH dehydrogenase II
YP_001341115.1	PFAM: protein of unknown function DUF188; KEGG: hch:HCH_06960 hypothetical protein
YP_001341116.1	PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: cps:CPS_3686 electron transfer flavoprotein-ubiquinone oxidoreductase
YP_001341117.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pat:Patl_0656 acyl-CoA dehydrogenase-like
YP_001341118.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sde:Sde_1884 rhodanese-like
YP_001341121.1	KEGG: pae:PA4576 probable ATP-dependent protease
YP_001341122.1	TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: sde:Sde_1654 ATPase
YP_001341123.1	TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: pin:Ping_1095 DNA polymerase III, delta prime subunit
YP_001341124.1	PFAM: thymidylate kinase; KEGG: rma:Rmag_0220 dTMP kinase
YP_001341125.1	PFAM: aminodeoxychorismate lyase; KEGG: sde:Sde_1633 hypothetical protein
YP_001341126.1	PFAM: aminotransferase class IV; KEGG: noc:Noc_1662 aminotransferase, class IV
YP_001341127.1	KEGG: abo:ABO_0450 hypothetical protein
YP_001341128.1	broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor
YP_001341129.1	PFAM: peptidase M48 Ste24p; HtpX domain protein; KEGG: csa:Csal_1347 HtpX-like protein
YP_001341131.1	TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: cps:CPS_2058 formate dehydrogenase, alpha subunit
YP_001341132.1	PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: cps:CPS_2057 formate dehydrogenase, beta subunit
YP_001341133.1	catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor
YP_001341134.1	forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm
YP_001341135.1	PFAM: NAD(P) transhydrogenase beta subunit; KEGG: noc:Noc_0261 NAD(P) transhydrogenase, beta subunit
YP_001341136.1	KEGG: hch:HCH_02295 hypothetical protein
YP_001341137.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: maq:Maqu_1775 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region
YP_001341138.1	PFAM: protein of unknown function DUF462; KEGG: hit:NTHI1564 hypothetical protein
YP_001341139.1	TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: vfi:VFA0700 aminomethyltransferase
YP_001341140.1	PFAM: glycine hydroxymethyltransferase; KEGG: vvy:VVA0693 serine hydroxymethyltransferase
YP_001341141.1	part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor
YP_001341142.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine
YP_001341143.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_5204 transcriptional regulator, LysR family
YP_001341144.1	PFAM: major facilitator superfamily MFS_1; KEGG: vei:Veis_0958 major facilitator superfamily MFS_1
YP_001341145.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: maq:Maqu_3587 diguanylate cyclase
YP_001341146.1	PFAM: aldehyde dehydrogenase; KEGG: ppu:PP_1256 ketoglutarate semialdehyde dehydrogenase
YP_001341147.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: pca:Pcar_2847 putative alcohol dehydrogenase
YP_001341148.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: chy:CHY_1303 TRAP dicarboxylate transporter, DctM subunit
YP_001341149.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: chy:CHY_1302 TRAP dicarboxylate transporter, DctQ subunit
YP_001341150.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: chy:CHY_1301 TRAP dicarboxylate transporter, DctP subunit
YP_001341151.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppu:PP_2539 transcriptional regulator, LysR family
YP_001341152.1	KEGG: maq:Maqu_3852 hypothetical protein
YP_001341154.1	KEGG: bch:Bcen2424_1201 phosphatase-like protein
YP_001341155.1	PFAM: Threonyl/alanyl tRNA synthetase SAD; KEGG: vpa:VP1766 putative alanyl-tRNA synthetase
YP_001341156.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pfl:PFL_2417 transporter, LysE family
YP_001341157.1	PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: cps:CPS_2855 substrate-binding transcriptional regulator, AraC family
YP_001341158.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pfl:PFL_0418 methyl-accepting chemotaxis transducer
YP_001341159.1	TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rfr:Rfer_0923 anion transporter
YP_001341160.1	TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: psp:PSPPH_1633 ribosomal large subunit pseudouridine synthase C
YP_001341161.1	TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: pau:PA14_25560 ribonuclease E
YP_001341162.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: vpa:VP2513 sulfate permease family protein
YP_001341163.1	TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: sde:Sde_2572 hypothetical protein
YP_001341164.1	E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC
YP_001341165.1	TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; KEGG: hch:HCH_01917 nicotinate-nucleotide pyrophosphorylase
YP_001341166.1	TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: cvi:CV1531 acetate kinase
YP_001341167.1	TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; DRTGG domain protein; KEGG: aha:AHA_0890 phosphate acetyltransferase
YP_001341169.1	KEGG: rme:Rmet_0472 fimbrial protein pilin
YP_001341170.1	PFAM: type II secretion system protein E; KEGG: cpf:CPF_2570 secretion system protein E
YP_001341171.1	PFAM: type II secretion system protein; KEGG: nca:Noca_1127 type II secretion system protein
YP_001341172.1	PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: noc:Noc_0310 prepilin peptidase
YP_001341173.1	TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; KEGG: maq:Maqu_2684 dephospho-CoA kinase
YP_001341174.1	PFAM: protein of unknown function DUF329; KEGG: psb:Psyr_0794 zinc-binding protein
YP_001341175.1	PFAM: response regulator receiver; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_04305 FOG: CheY-like receiver
YP_001341176.1	PFAM: ATP-binding region ATPase domain protein; KEGG: sde:Sde_1855 signal transduction histidine kinase
YP_001341177.1	PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pat:Patl_0628 transcriptional regulator, GntR family
YP_001341178.1	TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; KEGG: pat:Patl_0629 benzoate transporter
YP_001341179.1	KEGG: sfr:Sfri_0065 ZIP zinc transporter family protein
YP_001341180.1	TIGRFAM: Ectoine/hydroxyectoine ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_00890 ABC-type polar amino acid transport system, ATPase component
YP_001341181.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; Ectoine/hydroxyectoine ABC transporter permease protein EhuD; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_00889 ABC-type amino acid transport system, permease component
YP_001341182.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; Ectoine/hydroxyectoine ABC transporter permease protein EhuC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_00888 ABC-type amino acid transport system, permease component
YP_001341183.1	TIGRFAM: Ectoine/hydroxyEctoine ABC transporter solute-binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: hch:HCH_00887 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
YP_001341184.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: eba:ebA6233 sensor histidine kinase
YP_001341185.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: eba:ebA6235 DNA-binding response regulator
YP_001341186.1	PFAM: cytochrome c biogenesis protein transmembrane region; Thioredoxin domain; KEGG: dar:Daro_4167 cytochrome c biogenesis protein, transmembrane region
YP_001341187.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: shm:Shewmr7_2154 redoxin domain protein
YP_001341188.1	KEGG: cps:CPS_2789 putative lipoprotein
YP_001341189.1	KEGG: pat:Patl_0575 hypothetical protein
YP_001341190.1	PFAM: ApbE family lipoprotein; KEGG: cps:CPS_2787 ApbE family protein
YP_001341191.1	TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: pau:PA14_56300 putative fumarase
YP_001341193.1	PFAM: histidine triad (HIT) protein; KEGG: pfl:PFL_4772 histidine triad family protein
YP_001341194.1	PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: sde:Sde_3214 hypothetical protein
YP_001341195.1	TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; YbaK/prolyl-tRNA synthetase associated region; KEGG: maq:Maqu_1735 prolyl-tRNA synthetase
YP_001341196.1	TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: aha:AHA_1678 arsenate reductase
YP_001341197.1	PFAM: flavodoxin/nitric oxide synthase; KEGG: sde:Sde_0899 TRAP dicarboxylate transporter-DctP subunit
YP_001341198.1	LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation
YP_001341199.1	PFAM: protein of unknown function DUF81; KEGG: hch:HCH_02656 predicted permease
YP_001341200.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive
YP_001341201.1	PFAM: HesB/YadR/YfhF-family protein; nitrogen-fixing NifU domain protein; KEGG: csa:Csal_1888 HesB/YadR/YfhF
YP_001341202.1	PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: hch:HCH_02538 sulfite reductase, beta subunit (hemoprotein)
YP_001341203.1	PFAM: uncharacterised conserved protein UCP030820; KEGG: mca:MCA2060 hypothetical protein
YP_001341204.1	KEGG: maq:Maqu_1880 SH3, type 3 domain protein
YP_001341205.1	PFAM: sodium/hydrogen exchanger; KEGG: sde:Sde_2015 sodium/hydrogen antiporter
YP_001341206.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_001341207.1	PFAM: aldo/keto reductase; KEGG: vfi:VFA0836 Tas protein
YP_001341208.1	PFAM: Di-haem cytochrome c peroxidase; KEGG: sit:TM1040_1422 di-haem cytochrome c peroxidase
YP_001341209.1	works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell
YP_001341210.1	TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pat:Patl_0926 septum site-determining protein MinD
YP_001341211.1	TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; Septum formation inhibitor MinC domain protein; KEGG: pat:Patl_0925 septum site-determining protein MinC
YP_001341212.1	PFAM: SMC domain protein; KEGG: yps:YPTB0915 putative ATP-dependent dsDNA exonuclease
YP_001341213.1	with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity
YP_001341214.1	PFAM: ferredoxin
YP_001341216.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: bur:Bcep18194_C6919 short chain dehydrogenase
YP_001341217.1	PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: bam:Bamb_5726 transcriptional regulator, AraC family
YP_001341218.1	TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: cvi:CV2694 aminoacyl-histidine dipeptidase precursor
YP_001341219.1	KEGG: eca:ECA2135 periplasmic pectate lyase
YP_001341220.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sde:Sde_1851 helix-turn-helix, AraC type
YP_001341223.1	TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pfo:Pfl_3649 AP endonuclease, family 1
YP_001341224.1	PFAM: regulatory protein ArsR; KEGG: vch:VC0678 transcriptional activator HlyU
YP_001341225.1	KEGG: sdn:Sden_1108 alpha/beta hydrolase fold
YP_001341226.1	catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA
YP_001341227.1	molecular chaperone
YP_001341228.1	PFAM: helix-turn-helix domain protein; KEGG: pat:Patl_3619 transcriptional regulator, XRE family
YP_001341229.1	KEGG: hch:HCH_01599 hypothetical protein
YP_001341230.1	KEGG: pat:Patl_3617 hypothetical protein
YP_001341231.1	PFAM: O-methyltransferase family 3; KEGG: ava:Ava_1652 O-methyltransferase, family 3
YP_001341232.1	PFAM: protein of unknown function DUF599; KEGG: pfl:PFL_1724 hypothetical protein
YP_001341233.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_001341234.1	PFAM: sulfatase; KEGG: bba:Bd2884 putative sulfatase
YP_001341235.1	PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: aha:AHA_2646 ATP-dependent RNA helicase
YP_001341236.1	PFAM: protein of unknown function UPF0118; KEGG: shw:Sputw3181_1622 protein of unknown function UPF0118
YP_001341237.1	PFAM: Exonuclease RNase T and DNA polymerase III; Exonuclease domain protein; SMART: Exonuclease; KEGG: hch:HCH_05002 exonuclease I
YP_001341238.1	PFAM: SEC-C motif domain protein; KEGG: vpa:VP1145 hypothetical protein
YP_001341239.1	PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dps:DP0884 two-component system response regulator (hybrid family)
YP_001341240.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: shm:Shewmr7_3307 multi-sensor hybrid histidine kinase
YP_001341241.1	KEGG: csa:Csal_2668 hypothetical protein
YP_001341242.1	PFAM: aldo/keto reductase; KEGG: btk:BT9727_1848 oxidoreductase, aldo/keto reductase family
YP_001341243.1	TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: vfi:VF1761 3-phosphoshikimate 1-carboxyvinyltransferase
YP_001341245.1	TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; KEGG: vpa:VP3022 ThiH protein
YP_001341246.1	PFAM: thiazole biosynthesis family protein; KEGG: vch:VC0065 thiG protein
YP_001341247.1	TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: sdy:SDY_3735 sulfur transfer protein involved in thiamine biosynthesis
YP_001341248.1	TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; Phosphomethylpyrimidine kinase type-1; KEGG: aha:AHA_0440 thiamine monophosphate synthase
YP_001341249.1	PFAM: thiamine biosynthesis protein ThiC; KEGG: eca:ECA0232 thiamine biosynthesis protein
YP_001341250.1	PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ecc:c3899 hypothetical protein YraL
YP_001341251.1	KEGG: hch:HCH_05894 putative lipoprotein
YP_001341252.1	PFAM: protein of unknown function UPF0102; KEGG: cps:CPS_4433 conserved hypothetical protein TIGR00252
YP_001341253.1	KEGG: pau:PA14_57500 putative phosphoheptose isomerase
YP_001341254.1	PFAM: Stringent starvation protein B; KEGG: pha:PSHAa2526 stringent starvation protein B
YP_001341255.1	PFAM: Glutathione S-transferase domain; KEGG: hch:HCH_05897 glutathione S-transferase
YP_001341256.1	PFAM: ribosomal protein S9; KEGG: shw:Sputw3181_3430 ribosomal protein S9
YP_001341257.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_001341258.1	PFAM: AFG1-family ATPase; KEGG: psp:PSPPH_4128 ATPase, putative
YP_001341259.1	KEGG: hch:HCH_05301 hypothetical protein
YP_001341260.1	PFAM: protein of unknown function DUF34; KEGG: eca:ECA1350 hypothetical protein
YP_001341261.1	PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: pfo:Pfl_0875 peptidase S1 and S6, chymotrypsin/Hap
YP_001341262.1	KEGG: chu:CHU_3707 hypothetical protein
YP_001341263.1	PFAM: histidinol dehydrogenase; KEGG: abo:ABO_0562 histidinol dehydrogenase
YP_001341264.1	TIGRFAM: ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; KEGG: pcr:Pcryo_2193 ATP phosphoribosyltransferase
YP_001341265.1	TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: csa:Csal_2214 UDP-N-acetylglucosamine 1-carboxyvinyltransferase
YP_001341266.1	PFAM: BolA family protein; KEGG: csa:Csal_2215 BolA-like protein
YP_001341267.1	PFAM: toluene tolerance family protein; KEGG: pau:PA14_57840 putative toluene tolerance protein
YP_001341268.1	PFAM: Mammalian cell entry related domain protein; KEGG: ppu:PP_0960 toluene tolerance ABC transporter, periplasmic substrate-binding protein
YP_001341269.1	PFAM: protein of unknown function DUF140; KEGG: hch:HCH_05313 ABC-type transport system involved in resistance to organic solvents, permease component
YP_001341270.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: saz:Sama_3081 ABC transporter, ATP-binding protein, putative
YP_001341271.1	TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: tdn:Tmden_1369 K+-dependent Na+/Ca+ exchanger related-protein
YP_001341272.1	PFAM: protein of unknown function DUF1239; KEGG: lpp:lpp0900 hypothetical protein
YP_001341273.1	TIGRFAM: Cell envelope biogenesis YhbN; PFAM: OstA family protein; KEGG: vpa:VP2668 putative ABC superfamily transport protein
YP_001341274.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: maq:Maqu_2714 ABC transporter related
YP_001341275.1	TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: sde:Sde_3179 response regulator receiver domain protein (CheY-like)
YP_001341276.1	PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: vvy:VV0446 nitrogen regulatory IIA protein PtsN
YP_001341277.1	TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: sde:Sde_3182 HNH nuclease
YP_001341278.1	TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: maq:Maqu_2720 magnesium transporter
YP_001341279.1	PFAM: protein of unknown function DUF615; KEGG: maq:Maqu_2721 protein of unknown function DUF615
YP_001341280.1	this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; a fusion protein of this enzyme with MsrA and thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae
YP_001341282.1	PFAM: GCN5-related N-acetyltransferase; KEGG: saz:Sama_1562 ferrichrome-binding protein
YP_001341285.1	PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: stm:STM3846.s putative reverse transcriptase
YP_001341286.1	KEGG: stm:STM3845 putative inner membrane protein
YP_001341287.1	KEGG: sde:Sde_1196 hypothetical protein
YP_001341288.1	PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: abo:ABO_2134 phosphoribosyl-AMP cyclohydrolase
YP_001341289.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: psp:PSPPH_0940 methyl-accepting chemotaxis protein
YP_001341290.1	KEGG: vch:VCA0225 hypothetical protein
YP_001341291.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pde:Pden_2377 short-chain dehydrogenase/reductase SDR
YP_001341292.1	PFAM: 2OG-Fe(II) oxygenase; KEGG: pau:PA14_01810 putative dioxygenase
YP_001341293.1	PFAM: UvrD/REP helicase; KEGG: dps:DP0882 similar to ATP-dependent DNA helicase II (Rep)
YP_001341294.1	PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: hch:HCH_00061 predicted deacylase
YP_001341295.1	KEGG: mes:Meso_4046 hypothetical protein
YP_001341296.1	KEGG: sit:TM1040_2252 ABC transporter, fused inner membrane subunits
YP_001341297.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRA2116 putative ABC-type uncharacterized transport system ATPase component
YP_001341298.1	KEGG: pcr:Pcryo_0025 hypothetical protein
YP_001341299.1	PFAM: ATPase; SMART: Sel1 domain protein repeat-containing protein; KEGG: pcr:Pcryo_0026 hypothetical protein
YP_001341300.1	PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; KEGG: cps:CPS_4909 substrate-binding transcriptional regulator, AraC family
YP_001341301.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pde:Pden_1470 lysine exporter protein (LysE/YggA)
YP_001341302.1	KEGG: pde:Pden_1598 hypothetical protein
YP_001341304.1	KEGG: mxa:MXAN_5464 hypothetical protein
YP_001341305.1	PFAM: peptidase M15D vanX D-ala-D-ala dipeptidase; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: pau:PA14_15160 hypothetical protein
YP_001341306.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pau:PA14_15180 putative ABC transport system, membrane protein
YP_001341307.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pau:PA14_15190 putative TRAP-type C4-dicarboxylate transport protein
YP_001341308.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: csa:Csal_0660 TRAP dicarboxylate transporter, DctP subunit
YP_001341309.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: csa:Csal_0659 transcriptional regulator, LysR family
YP_001341310.1	KEGG: saz:Sama_1558 conserved hypothetical protein
YP_001341311.1	TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: sde:Sde_1645 hippurate hydrolase
YP_001341312.1	catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde
YP_001341313.1	PFAM: creatinase; peptidase M24; KEGG: sde:Sde_1643 Xaa-Pro dipeptidase
YP_001341314.1	PFAM: aldehyde dehydrogenase; KEGG: sde:Sde_1642 adenylosuccinate lyase
YP_001341315.1	PFAM: SMC domain protein; SMART: AAA ATPase; KEGG: rme:Rmet_4896 SMC protein-like protein
YP_001341316.1	PFAM: CBS domain containing protein; KEGG: sfr:Sfri_2693 CBS domain containing protein
YP_001341317.1	PFAM: alpha/beta hydrolase fold; KEGG: rle:pRL100270 putative proline iminopeptidase
YP_001341318.1	PFAM: glutathione peroxidase; KEGG: aci:ACIAD0193 glutathione peroxidase
YP_001341319.1	KEGG: pin:Ping_1820 hypothetical protein
YP_001341320.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cps:CPS_4694 transcriptional regulator, AraC family
YP_001341321.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: maq:Maqu_1070 alkylhydroperoxidase like protein, AhpD family
YP_001341322.1	PFAM: nucleoside recognition domain protein; KEGG: pin:Ping_1950 nucleoside recognition domain protein
YP_001341323.1	PFAM: glycosyl transferase group 1; KEGG: maq:Maqu_3631 glycosyl transferase, group 1
YP_001341324.1	PFAM: dienelactone hydrolase; KEGG: cps:CPS_4005 carboxymethylenebutenolidase family protein
YP_001341325.1	PFAM: YaeQ family protein; KEGG: aha:AHA_2156 YaeQ
YP_001341326.1	PFAM: peptidase S24 S26A and S26B; KEGG: shw:Sputw3181_1083 putative prophage repressor
YP_001341327.1	PFAM: helix-turn-helix domain protein; peptidase S24 S26A and S26B; KEGG: sfv:SFV_0270 putative prophage repressor CI
YP_001341328.1	PFAM: carbon storage regulator; KEGG: psp:PSPPH_3260 carbon storage regulator
YP_001341329.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility domain; KEGG: sfr:Sfri_0293 NAD-dependent epimerase/dehydratase
YP_001341330.1	TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: azo:azo1920 probable succinate-semialdehyde dehydrogenase [NAD(P)+]
YP_001341331.1	TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: cps:CPS_4027 transporter, BCCT family
YP_001341332.1	PFAM: aldehyde dehydrogenase; KEGG: jan:Jann_4156 aldehyde dehydrogenase
YP_001341333.1	PFAM: luciferase family protein; KEGG: aci:ACIAD2543 conserved hypothetical protein; putative monooxygenase oxidoreductase protein
YP_001341334.1	PFAM: flavin reductase domain protein FMN-binding; KEGG: rle:pRL100244 putative flavin monooxygenase/reductase
YP_001341335.1	PFAM: alpha/beta hydrolase fold; KEGG: jan:Jann_4154 alpha/beta hydrolase
YP_001341336.1	PFAM: protein of unknown function DUF1185; KEGG: jan:Jann_4153 protein of unknown function DUF1185
YP_001341337.1	PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ret:RHE_PC00021 probable transcriptional regulator protein, GntR family
YP_001341338.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: jan:Jann_1592 carboxymuconolactone decarboxylase
YP_001341339.1	PFAM: protein of unknown function DUF1330; KEGG: pst:PSPTO_2669 hypothetical protein
YP_001341340.1	PFAM: extracellular solute-binding protein family 1; KEGG: pfo:Pfl_3241 extracellular solute-binding protein, family 1
YP_001341341.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfo:Pfl_3242 binding-protein-dependent transport systems inner membrane component
YP_001341342.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ppu:PP_3816 polyamine ABC transporter, permease protein
YP_001341343.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pfo:Pfl_3244 spermidine/putrescine ABC transporter ATP-binding subunit
YP_001341344.1	KEGG: reh:H16_A3198 hypothetical protein
YP_001341345.1	KEGG: noc:Noc_2946 putative DNA-binding protein
YP_001341346.1	TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: pat:Patl_3765 plasmid maintenance system antidote protein, XRE family
YP_001341347.1	KEGG: pat:Patl_3764 plasmid maintenance system killer
YP_001341348.1	PFAM: GCN5-related N-acetyltransferase; KEGG: plu:plu2650 hypothetical protein
YP_001341349.1	PFAM: Protein of unknown function DUF1778; KEGG: plu:plu2651 hypothetical protein
YP_001341350.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sus:Acid_4480 transcriptional regulator, AraC family
YP_001341351.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_3671 alcohol dehydrogenase, zinc-binding domain protein
YP_001341352.1	KEGG: pfo:Pfl_1151 phage protein D-like
YP_001341353.1	PFAM: phage tail X family protein; KEGG: pfo:Pfl_1150 phage tail X
YP_001341354.1	PFAM: phage P2 GpU family protein; KEGG: pfo:Pfl_1149 phage protein U-like
YP_001341355.1	PFAM: peptidylprolyl isomerase FKBP-type; KEGG: pha:PSHAa2063 trigger factor
YP_001341356.1	TIGRFAM: Phage regulatory protein Rha family; KEGG: sdy:SDY_1928 hypothetical protein
YP_001341357.1	KEGG: eca:ECA3458 hypothetical protein
YP_001341358.1	KEGG: vfi:VFA0037 hypothetical protein
YP_001341360.1	PFAM: phage late control D family protein; KEGG: pfo:Pfl_1151 phage protein D-like
YP_001341361.1	PFAM: phage tail X family protein; KEGG: pfo:Pfl_1150 phage tail X
YP_001341362.1	PFAM: phage P2 GpU family protein; KEGG: pfo:Pfl_1149 phage protein U-like
YP_001341364.1	TIGRFAM: Phage regulatory protein Rha family; KEGG: sgl:SG0739 hypothetical protein
YP_001341367.1	TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: csa:Csal_1200 TIM-barrel protein, YjbN family
YP_001341368.1	TIGRFAM: transaldolase; PFAM: Transaldolase; KEGG: sdn:Sden_2734 transaldolase
YP_001341369.1	PFAM: transferase hexapeptide repeat containing protein; KEGG: bsu:BG10043 probable maltose o-acetyltransferase
YP_001341370.1	PFAM: glucose sorbosone dehydrogenase; KEGG: ppr:PBPRB1412 hypothetical glucose dehydrogenase
YP_001341371.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pat:Patl_2703 diguanylate cyclase
YP_001341372.1	PFAM: VacJ family lipoprotein; KEGG: csa:Csal_1471 VacJ-like lipoprotein
YP_001341373.1	TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases; KEGG: noc:Noc_1301 ATP-dependent helicase HrpA
YP_001341374.1	TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: ypn:YPN_1390 cysteine synthase A
YP_001341375.1	KEGG: vpa:VPA0586 hypothetical protein
YP_001341376.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: net:Neut_1061 methyltransferase type 12
YP_001341377.1	KEGG: mfa:Mfla_0407 hypothetical protein
YP_001341378.1	PFAM: protein of unknown function DUF1706; KEGG: ilo:IL2072 hypothetical protein
YP_001341379.1	PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: ppr:PBPRA1975 hypothetical oxidoreductase
YP_001341380.1	PFAM: regulatory protein MerR; KEGG: ppr:PBPRA1976 hypothetical transcriptional regulator
YP_001341381.1	PFAM: glutamine amidotransferase class-II; KEGG: pin:Ping_1336 glutamine amidotransferase, class-II
YP_001341382.1	SMART: von Willebrand factor type A; KEGG: hch:HCH_02620 uncharacterized protein containing a von Willebrand factor type A (vWA) domain
YP_001341383.1	PFAM: protein of unknown function UPF0153; KEGG: eca:ECA2365 hypothetical protein
YP_001341384.1	PFAM: protein of unknown function DUF709; KEGG: csa:Csal_1462 protein of unknown function DUF709
YP_001341385.1	TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: pfo:Pfl_1388 ribonuclease D
YP_001341386.1	TIGRFAM: recombination protein RecR; PFAM: RecR protein; TOPRIM domain protein; SMART: Toprim sub domain protein; KEGG: sde:Sde_1337 recombinational DNA repair protein
YP_001341387.1	PFAM: conserved hypothetical protein 103; KEGG: ilo:IL1848 hypothetical protein
YP_001341388.1	KEGG: pau:PA14_44630 DNA polymerase subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase
YP_001341389.1	PFAM: Rhodanese domain protein; KEGG: shn:Shewana3_2261 rhodanese domain protein
YP_001341390.1	PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: ilo:IL0243 prolyl 4-hydroxylase alpha subunit homolog, 2OG-Fe(II) oxygenase family
YP_001341391.1	PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pat:Patl_3456 type III restriction enzyme, res subunit
YP_001341392.1	PFAM: regulatory protein TetR; KEGG: pha:PSHAa1580 transcriptional regulator of the TetR/AcrR
YP_001341393.1	KEGG: noc:Noc_2228 hypothetical protein
YP_001341394.1	PFAM: DTW domain containing protein; KEGG: sde:Sde_2921 hypothetical protein
YP_001341395.1	KEGG: ppr:PBPRA1290 hypothetical protein
YP_001341396.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hch:HCH_00830 predicted phosphatase/phosphohexomutase
YP_001341397.1	PFAM: 37kDa nucleoid-associated protein; KEGG: psb:Psyr_1083 37kDa nucleoid-associated bacterial protein
YP_001341398.1	KEGG: sde:Sde_3128 hypothetical protein
YP_001341399.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_2191 lactoylglutathione lyase
YP_001341400.1	PFAM: OmpA/MotB domain protein; KEGG: hch:HCH_00763 outer membrane protein and related peptidoglycan-associated (LipO)protein
YP_001341401.1	PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: pin:Ping_3356 2-hydroxy-3-oxopropionate reductase
YP_001341402.1	PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; regulatory protein DeoR; KEGG: hin:HI1009 glycerol-3-phosphate regulon repressor
YP_001341403.1	PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: pmu:PM1366 3-hydroxyisobutyrate dehydrogenase
YP_001341404.1	PFAM: type III effector Hrp-dependent outers; KEGG: bmb:BruAb2_0144 hypothetical protein
YP_001341405.1	PFAM: class II aldolase/adducin family protein; KEGG: pmu:PM1364 hypothetical HI1012
YP_001341406.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: aha:AHA_1058 AP endonuclease, family 2
YP_001341407.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: hin:HI1014 hypothetical protein
YP_001341408.1	PFAM: Gluconate transporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: stm:STM2913 putative permease
YP_001341409.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: hch:HCH_04127 predicted flavoprotein
YP_001341411.1	KEGG: rle:RL0322 putative iron-regulated protein
YP_001341412.1	PFAM: protein of unknown function DUF1111; KEGG: psb:Psyr_4063 protein of unknown function DUF1111
YP_001341413.1	KEGG: atc:AGR_C_489 hypothetical protein
YP_001341414.1	PFAM: uncharacterised conserved protein UCP028101; KEGG: sit:TM1040_2204 uncharacterised conserved protein UCP028101
YP_001341415.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: shw:Sputw3181_3967 diguanylate cyclase/phosphodiesterase
YP_001341416.1	PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: csa:Csal_3004 membrane protein involved in aromatic hydrocarbon degradation
YP_001341417.1	PFAM: Integrase catalytic region; KEGG: maq:Maqu_0236 integrase, catalytic region
YP_001341418.1	KEGG: vvy:VV0370 putative transposase subunit
YP_001341419.1	KEGG: ppr:PBPRB1927 putative transposase
YP_001341420.1	TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: ava:Ava_1611 amino acid adenylation
YP_001341421.1	TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; KEGG: pfo:Pfl_1845 peptide synthase
YP_001341422.1	TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: psb:Psyr_2608 amino acid adenylation
YP_001341423.1	TIGRFAM: cyclic peptide transporter; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_6469 cyclic peptide transporter
YP_001341424.1	PFAM: SMC domain protein; SMART: AAA ATPase; KEGG: atc:AGR_C_3902 hypothetical protein
YP_001341425.1	PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: mxa:MXAN_3636 non-ribosomal peptide synthetase
YP_001341426.1	TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: sco:SCO3230 CDA peptide synthetase I
YP_001341427.1	PFAM: Integrase catalytic region; KEGG: maq:Maqu_0236 integrase, catalytic region
YP_001341428.1	KEGG: IS630 ORF
YP_001341429.1	PFAM: 4'-phosphopantetheinyl transferase; KEGG: mxa:MXAN_3485 putative 4'-phosphopantetheinyl transferase
YP_001341430.1	KEGG: ppr:PBPRB0670 hypothetical protein
YP_001341431.1	PFAM: transposase IS4 family protein; KEGG: sdn:Sden_0598 transposase, IS4
YP_001341432.1	KEGG: sdn:Sden_2439 transposase, IS4
YP_001341433.1	PFAM: Thioesterase; KEGG: ava:Ava_3990 thioesterase
YP_001341434.1	KEGG: pau:PA14_51630 possible transposase
YP_001341435.1	PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3340 integrase, catalytic region
YP_001341436.1	KEGG: dde:Dde_2987 transposase
YP_001341438.1	KEGG: dvu:DVU2695 hypothetical protein
YP_001341439.1	TIGRFAM: integration host factor, alpha subunit; PFAM: histone family protein DNA-binding protein; KEGG: hch:HCH_04573 integration host factor, alpha subunit
YP_001341440.1	TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: pen:PSEEN1968 phenylalanyl-tRNA synthetase, beta subunit
YP_001341441.1	TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: maq:Maqu_2057 phenylalanyl-tRNA synthetase, alpha subunit
YP_001341442.1	TIGRFAM: ribosomal protein L20; KEGG: pfo:Pfl_1934 ribosomal protein L20
YP_001341443.1	PFAM: ribosomal protein L35; KEGG: csa:Csal_1801 ribosomal protein L35
YP_001341444.1	TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: pfl:PFL_2112 translation initiation factor IF-3
YP_001341445.1	TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); TGS domain protein; Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: pfl:PFL_2111 threonyl-tRNA synthetase
YP_001341446.1	PFAM: O-methyltransferase family 3; KEGG: mxa:MXAN_5983 O-methyltransferase family protein
YP_001341447.1	KEGG: btl:BALH_1133 hypothetical protein
YP_001341448.1	TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II; KEGG: pin:Ping_1726 2-dehydro-3-deoxyphosphoheptonate aldolase
YP_001341449.1	PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: ppr:PBPRB1321 putative transcriptional regulator, HTH_3family
YP_001341450.1	PFAM: protein of unknown function DUF442; KEGG: abo:ABO_1944 hypothetical protein
YP_001341451.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: ilo:IL2411 parvulin-like peptidyl-prolyl isomerase
YP_001341452.1	PFAM: response regulator receiver; KEGG: pha:PSHAb0169 putative two domain protein: response regulator receiver domain protein
YP_001341453.1	TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: pha:PSHAa2744 7,8-dihydro-8-oxoguanine-triphosphatase
YP_001341454.1	TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ; KEGG: hch:HCH_05872 arginine biosynthesis bifunctional protein ArgJ
YP_001341455.1	TIGRFAM: preprotein translocase, SecA subunit; PFAM: helicase domain protein; SEC-C motif domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: hch:HCH_05873 preprotein translocase, SecA subunit
YP_001341456.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_001341457.1	TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: sde:Sde_0853 cell division protein FtsZ
YP_001341458.1	PFAM: cell division protein FtsA; KEGG: pfl:PFL_5057 cell division protein FtsA
YP_001341459.1	PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: maq:Maqu_2449 cell division protein FtsQ
YP_001341460.1	TIGRFAM: D-alanine--D-alanine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; RimK domain protein ATP-grasp; KEGG: maq:Maqu_2450 D-alanine--D-alanine ligase
YP_001341461.1	TIGRFAM: UDP-N-acetylmuramate--alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: csa:Csal_2189 UDP-N-acetylmuramate--alanine ligase
YP_001341462.1	TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain; KEGG: saz:Sama_0354 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
YP_001341463.1	TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: hch:HCH_05884 bacterial cell division membrane protein
YP_001341464.1	TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: pau:PA14_57370 UDP-N-acetylmuramoylalanine-D-glutamate ligase
YP_001341465.1	TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: glycosyl transferase family 4; KEGG: pfl:PFL_5064 phospho-N-acetylmuramoyl-pentapeptide-transferase
YP_001341466.1	TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dar:Daro_3502 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D -alanyl ligase
YP_001341467.1	TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: hch:HCH_05888 UDP-N-acetylmuramyl tripeptide synthase
YP_001341468.1	PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: maq:Maqu_2458 peptidoglycan glycosyltransferase
YP_001341469.1	PFAM: cell division protein FtsL; KEGG: hch:HCH_05890 cell division protein FtsL
YP_001341470.1	TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: ppu:PP_1329 S-adenosyl-methyltransferase MraW
YP_001341471.1	TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: aeh:Mlg_2202 MraZ protein
YP_001341472.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: aba:Acid345_3845 periplasmic sensor signal transduction histidine kinase
YP_001341473.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: noc:Noc_0676 two comoponent transcriptional regulator, winged helix family
YP_001341474.1	PFAM: adenylosuccinate synthetase; KEGG: csa:Csal_1282 adenylosuccinate synthase
YP_001341475.1	PFAM: tRNA synthetase class II (G H P and S); KEGG: aeh:Mlg_0577 tRNA synthetase, class II (G, H, P and S)
YP_001341476.1	KEGG: tcx:Tcr_1092 hypothetical protein
YP_001341477.1	TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: pau:PA14_65270 protease subunit HflC
YP_001341478.1	TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: psb:Psyr_0574 HflK
YP_001341479.1	PFAM: GTP-binding protein HSR1-related; KEGG: csa:Csal_1278 GTP-binding protein, HSR1-related
YP_001341480.1	TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: pau:PA14_65310 putative host factor-I protein
YP_001341481.1	TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; KEGG: saz:Sama_3026 tRNA isopentenyltransferase
YP_001341482.1	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
YP_001341483.1	PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: hch:HCH_05387 N-acetylmuramoyl-L-alanine amidase
YP_001341484.1	PFAM: protein of unknown function UPF0079; KEGG: shn:Shewana3_0593 protein of unknown function UPF0079
YP_001341485.1	PFAM: protein of unknown function DUF81; KEGG: sfr:Sfri_3625 protein of unknown function DUF81
YP_001341486.1	3'-5' exoribonuclease specific for small oligoribonuclotides
YP_001341487.1	EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity
YP_001341488.1	PFAM: OmpA/MotB domain protein; KEGG: psp:PSPPH_0555 motility protein, MotA family
YP_001341489.1	KEGG: hch:HCH_05394 flagellar motor component
YP_001341490.1	PFAM: Metal-dependent hydrolase HDOD; KEGG: hch:HCH_05395 hypothetical protein
YP_001341491.1	TIGRFAM: phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related; KEGG: pen:PSEEN4961 phosphatidylserine decarboxylase
YP_001341492.1	TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: hch:HCH_04466 protein-export membrane protein SecF
YP_001341493.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_001341494.1	TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: pau:PA14_14610 putative preprotein translocase
YP_001341495.1	TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; KEGG: maq:Maqu_1114 queuine tRNA-ribosyltransferase
YP_001341496.1	TIGRFAM: S-adenosylmethionine--tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: pau:PA14_14590 S-adenosylmethionine:tRNA ribosyltransferase-isomerase
YP_001341497.1	KEGG: ppr:PBPRB1233 hypothetical protein
YP_001341498.1	KEGG: saz:Sama_0788 transcriptional regulator
YP_001341499.1	TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: hch:HCH_03992 Na+/alanine symporter
YP_001341500.1	catalyzes the formation of fumarate from aspartate
YP_001341501.1	PFAM: Asparaginase/glutaminase; KEGG: hch:HCH_06648 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D
YP_001341502.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: maq:Maqu_0991 glyoxalase/bleomycin resistance protein/dioxygenase
YP_001341503.1	KEGG: sde:Sde_1546 ribosomal protein L35
YP_001341504.1	PFAM: 2-nitropropane dioxygenase NPD; KEGG: pin:Ping_1940 2-nitropropane dioxygenase, NPD
YP_001341505.1	PFAM: NADPH-dependent FMN reductase; KEGG: vch:VC2111 hypothetical protein
YP_001341506.1	PFAM: GtrA family protein; KEGG: gbe:GbCGDNIH1_1448 hypothetical protein
YP_001341507.1	PFAM: Pirin domain protein; KEGG: mxa:MXAN_2232 pirin family protein
YP_001341508.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ppr:PBPRB0748 hypothetical protein
YP_001341509.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ppr:PBPRB0749 hypothetical two-component response regulator
YP_001341510.1	PFAM: glycosyl transferase family 2; KEGG: ppr:PBPRB0750 hypothetical glycosyl transferase
YP_001341511.1	PFAM: glycosyl transferase family 39; KEGG: ppr:PBPRB0751 hypothetical protein
YP_001341512.1	PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pau:PA14_71070 putative transcriptional regulator, AraC family
YP_001341513.1	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pfl:PFL_5734 oxidoreductase FAD-binding domain/oxidoreductase NAD-binding domain/2Fe-2S iron-sulfur cluster binding domain protein
YP_001341514.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: ppu:PP_0315 rieske 2Fe-2S family protein
YP_001341515.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: azo:azo2518 LysR-family transcriptional regulator
YP_001341516.1	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: ajs:Ajs_3089 oxidoreductase FAD-binding domain protein
YP_001341517.1	PFAM: ring hydroxylating dioxygenase alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: azo:azo2516 putative ring hydroxylating large subunit
YP_001341518.1	PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: rso:RSc1089 putative salicylate-5-hydroxylase small oxygenase component oxidoreductase protein
YP_001341519.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: pna:Pnap_2461 Rieske (2Fe-2S) domain protein
YP_001341520.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: csa:Csal_0342 TRAP transporter solute receptor, TAXI family
YP_001341521.1	TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: jan:Jann_3796 TRAP transporter, 4TM/12TM fusion protein
YP_001341522.1	TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN2595 maleylpyruvate isomerase
YP_001341523.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: pna:Pnap_2454 cupin 2, conserved barrel domain protein
YP_001341524.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: azo:azo2421 fumarylpyruvate hydrolase
YP_001341525.1	catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome
YP_001341526.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pat:Patl_0997 transcriptional regulator, LysR family
YP_001341528.1	KEGG: hch:HCH_03046 hypothetical protein
YP_001341529.1	KEGG: rba:RB11381 hypothetical protein
YP_001341530.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bch:Bcen2424_3226 transcriptional regulator, LysR family
YP_001341531.1	PFAM: dihydrodipicolinate synthetase; KEGG: bch:Bcen2424_3227 dihydrodipicolinate synthetase
YP_001341532.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: tth:TTC0793 hypothetical protein
YP_001341533.1	TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bld:BLi02556 hypothetical protein
YP_001341534.1	TIGRFAM: CRISPR-associated protein, Csy4 family; KEGG: pin:Ping_1400 CRISPR-associated protein, Csy4 family protein
YP_001341536.1	TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family; PFAM: protein of unknown function DUF324; KEGG: ttj:TTHB165 hypothetical protein
YP_001341537.1	TIGRFAM: CRISPR-associated protein, Cmr5 family; KEGG: pfu:PF1125 hypothetical protein
YP_001341538.1	TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324; KEGG: pfu:PF1126 hypothetical protein
YP_001341539.1	KEGG: dge:Dgeo_0963 hypothetical protein
YP_001341540.1	TIGRFAM: CRISPR-associated protein, Crm2 family; KEGG: mxa:MXAN_7281 CRISPR-associated protein Crm2
YP_001341541.1	TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family; PFAM: protein of unknown function DUF324; KEGG: tth:TT_P0117 hypothetical protein
YP_001341542.1	KEGG: ecs:ECs0285 hypothetical protein
YP_001341543.1	PFAM: plasmid stabilization system; KEGG: neu:NE1577 hypothetical protein
YP_001341544.1	TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: neu:NE1578 hypothetical protein
YP_001341545.1	TIGRFAM: Xanthine dehydrogenase accessory protein XdhC; PFAM: protein of unknown function DUF182; KEGG: hch:HCH_01097 xanthine and CO dehydrogenase maturation factor, XdhC/CoxF family
YP_001341546.1	TIGRFAM: Xanthine dehydrogenase molybdopterin binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: hch:HCH_01098 xanthine dehydrogenase, molybdopterin-binding subunit B
YP_001341547.1	TIGRFAM: Xanthine dehydrogenase small subunit; PFAM: ferredoxin; molybdopterin dehydrogenase FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: hch:HCH_01099 xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A
YP_001341548.1	KEGG: vfi:VF1080 hypothetical protein
YP_001341549.1	PFAM: NMT1/THI5 like domain protein; KEGG: rle:pRL110614 hypothetical protein
YP_001341550.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rle:pRL110613 putative ATP-binding component of ABC transporter
YP_001341551.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL110612 putative permease component of ABC transporter
YP_001341552.1	PFAM: CMP/dCMP deaminase zinc-binding; KEGG: bja:blr6153 hypothetical protein
YP_001341553.1	PFAM: 2OG-Fe(II) oxygenase; KEGG: rme:Rmet_4741 2OG-Fe(II) oxygenase
YP_001341554.1	PFAM: YcfA family protein; KEGG: plu:plu3492 hypothetical protein
YP_001341555.1	PFAM: protein of unknown function UPF0150; KEGG: plu:plu4354 hypothetical protein
YP_001341556.1	KEGG: ppr:PBPRA2262 hypothetical protein
YP_001341557.1	TIGRFAM: Hydroxyisourate hydrolase; PFAM: Transthyretin; KEGG: reh:H16_A1009 transthyretin-like protein
YP_001341558.1	PFAM: monooxygenase FAD-binding; KEGG: aci:ACIAD3540 putative flavoprotein monooxygenase acting on aromatic compound
YP_001341559.1	PFAM: regulatory protein ArsR; KEGG: atc:AGR_L_3407 hypothetical protein
YP_001341560.1	PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: mlo:mll3591 alpha-L-arabinofuranosidase
YP_001341561.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mlo:mlr3587 ALPHA-GLUCOSIDES TRANSPORT ATP-BINDING PROTEIN AGLK
YP_001341562.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_3454 binding-protein-dependent transport systems inner membrane component
YP_001341563.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sal:Sala_0749 binding-protein-dependent transport systems inner membrane component
YP_001341564.1	PFAM: extracellular solute-binding protein family 1; KEGG: vei:Veis_3456 extracellular solute-binding protein, family 1
YP_001341565.1	PFAM: Aldose 1-epimerase; KEGG: pde:Pden_2751 aldose 1-epimerase
YP_001341566.1	PFAM: periplasmic binding protein; KEGG: yps:YPTB1369 putative periplasmic iron/siderophore binding protein
YP_001341567.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pfo:Pfl_0657 chemotaxis sensory transducer, cache sensor
YP_001341569.1	PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: ppu:PP_0313 electron transfer flavoprotein, beta subunit, putative
YP_001341570.1	PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: pfo:Pfl_5221 electron transfer flavoprotein, alpha subunit
YP_001341571.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: pen:PSEEN5175 iron-sulfur cluster-binding protein
YP_001341572.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ppu:PP_0310 oxidoreductase, FMN-binding
YP_001341573.1	KEGG: cps:CPS_4018 hypothetical protein
YP_001341574.1	PFAM: peptidase M19 renal dipeptidase; KEGG: pfo:Pfl_5225 peptidase M19, renal dipeptidase
YP_001341575.1	KEGG: maq:Maqu_0006 hypothetical protein
YP_001341577.1	PFAM: 5-nucleotidase; KEGG: pcr:Pcryo_2257 5-nucleotidase
YP_001341578.1	PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; KEGG: hch:HCH_02794 threonyl-tRNA synthetase
YP_001341579.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: maq:Maqu_0349 diguanylate cyclase
YP_001341580.1	PFAM: peptidase M48 Ste24p; KEGG: abo:ABO_1191 hypothetical protein
YP_001341581.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Two component regulator propeller; Two component regulator three Y domain protein; KEGG: vch:VC1353 GGDEF family protein
YP_001341582.1	PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: sal:Sala_1017 beta-galactosidase
YP_001341583.1	TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969; KEGG: pha:PSHAa2169 fumarylacetoacetase (fumarylacetoacetate hydrolase) (beta-diketonase)(FAA)
YP_001341584.1	TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: bbr:BB3255 putative glutathione-S-transferase
YP_001341585.1	TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_B4501 4-hydroxyphenylpyruvate dioxygenase
YP_001341586.1	An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine
YP_001341587.1	PFAM: regulatory protein MarR; KEGG: rde:RD1_3650 transcriptional regulator MarR/EmrR family, putative
YP_001341588.1	PFAM: MscS Mechanosensitive ion channel; KEGG: pha:PSHAb0176 putative mechanosensitive channel
YP_001341589.1	PFAM: metal-dependent protein hydrolase; KEGG: pha:PSHAb0024 putative metal-dependent protein hydrolase
YP_001341591.1	PFAM: chemotaxis sensory transducer; SMART: PAS domain containing protein; KEGG: tdn:Tmden_0972 methyl-accepting chemotaxis sensory transducer
YP_001341592.1	PFAM: protein of unknown function DUF925; KEGG: yen:YE1214 hypothetical protein
YP_001341593.1	PFAM: protein of unknown function DUF523; KEGG: pin:Ping_1206 purine nucleoside phosphorylase
YP_001341594.1	PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: vvy:VV1746 hypothetical protein
YP_001341595.1	KEGG: noc:Noc_0084 hypothetical protein
YP_001341596.1	KEGG: csa:Csal_2378 hypothetical protein
YP_001341599.1	PFAM: peptidase M32 carboxypeptidase Taq metallopeptidase; KEGG: vch:VC1414 thermostable carboxypeptidase 1
YP_001341600.1	component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent
YP_001341601.1	PFAM: BLUF domain protein; KEGG: pat:Patl_0764 BLUF domain containing protein
YP_001341602.1	KEGG: pin:Ping_1779 esterase/lipase/thioesterase family protein
YP_001341603.1	PFAM: FAD linked oxidase domain protein; KEGG: bja:blr7970 oxidoreductase
YP_001341604.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_001341605.1	PFAM: Sarcosine oxidase gamma subunit; KEGG: cps:CPS_4035 sarcosine oxidase, gamma subunit
YP_001341606.1	TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Glycine cleavage T-protein barrel; KEGG: pfl:PFL_5726 sarcosine oxidase, alpha subunit
YP_001341607.1	TIGRFAM: sarcosine oxidase, delta subunit family; PFAM: Sarcosine oxidase delta subunit heterotetrameric; KEGG: pen:PSEEN5160 sarcosine oxidase, delta subunit
YP_001341608.1	TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; KEGG: csa:Csal_0998 sarcosine oxidase, beta subunit family
YP_001341609.1	PFAM: glycoside hydrolase family 3 domain protein; KEGG: ppr:PBPRA0461 putative xylosidase
YP_001341610.1	PFAM: extracellular solute-binding protein family 1; KEGG: bja:blr3389 probable ABC transporter substrate-binding protein
YP_001341611.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02472 putative transport system permease ABC transporter protein
YP_001341612.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:RL2327 putative transmembrane component of ABC transporter
YP_001341613.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: vvy:VVA0129 ABC-type sugar transport system, ATPase component
YP_001341614.1	KEGG: spu:761133 hypothetical protein LOC761133
YP_001341615.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5693 transcriptional regulator, LysR family
YP_001341616.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bur:Bcep18194_C7469 lysine exporter family protein (LysE/YggA)
YP_001341617.1	PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B2563 major facilitator superfamily (MFS_1) transporter
YP_001341618.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_5293 transcriptional regulator, AraC family
YP_001341619.1	PFAM: ApbE family lipoprotein; KEGG: mca:MCA0129 thiamin biosynthesis lipoprotein ApbE
YP_001341620.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ilo:IL2075 ATPase component of ABC transporters with duplicated ATPase domains
YP_001341621.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pfo:Pfl_1418 chemotaxis sensory transducer
YP_001341622.1	KEGG: aav:Aave_0246 hypothetical protein
YP_001341623.1	PFAM: Helix-turn-helix type 11 domain protein; KEGG: cvi:CV0196 probable repressor transcription regulator protein
YP_001341624.1	KEGG: pna:Pnap_4949 hypothetical protein
YP_001341625.1	PFAM: pentapeptide repeat protein; KEGG: bce:BC2348 acetyltransferase
YP_001341626.1	catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate
YP_001341627.1	PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: csa:Csal_2979 mannitol dehydrogenase-like protein
YP_001341628.1	catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism
YP_001341629.1	PFAM: glycoside hydrolase family 31; KEGG: ypn:YPN_3050 glucosidase
YP_001341630.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: msu:MS0540 hypothetical protein
YP_001341631.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: msu:MS0541 hypothetical protein
YP_001341632.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: msu:MS0542 DctP protein
YP_001341633.1	PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: vvy:VVA1589 transcriptional regulator
YP_001341634.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: lic:LIC12087 histidine kinase sensor protein
YP_001341635.1	PFAM: response regulator receiver; KEGG: mmr:Mmar10_0903 response regulator receiver protein
YP_001341636.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: dar:Daro_3990 PAS:GGDEF
YP_001341637.1	PFAM: Citrate carrier protein; KEGG: aha:AHA_1242 sodium:citrate symporter
YP_001341638.1	PFAM: ATP-binding region ATPase domain protein; KEGG: shw:Sputw3181_0200 signal transduction histidine kinase regulating citrate/malate metabolism
YP_001341639.1	PFAM: response regulator receiver; Helix-turn-helix type 11 domain protein; KEGG: shw:Sputw3181_0199 response regulator receiver
YP_001341640.1	KEGG: csa:Csal_1442 hypothetical protein
YP_001341641.1	KEGG: pen:PSEEN4793 hypothetical protein
YP_001341642.1	catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate
YP_001341643.1	TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: pau:PA14_43940 succinyl-CoA synthetase alpha chain
YP_001341644.1	TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; KEGG: cps:CPS_2221 succinyl-CoA synthase, beta subunit
YP_001341645.1	TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: pau:PA14_43970 lipoamide dehydrogenase-glc
YP_001341646.1	TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: pat:Patl_1800 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase
YP_001341647.1	TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: dehydrogenase E1 component; Transketolase central region; KEGG: hch:HCH_04745 2-oxoglutarate dehydrogenase, E1 component
YP_001341648.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase
YP_001341649.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol
YP_001341650.1	TIGRFAM: Succinate dehydrogenase hydrophobic membrane anchor; KEGG: hch:HCH_04748 succinate dehydrogenase, hydrophobic anchor subunit
YP_001341651.1	TIGRFAM: Succinate dehydrogenase cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: maq:Maqu_1150 fumarate reductase, D subunit
YP_001341652.1	TIGRFAM: citrate synthase I; PFAM: Citrate synthase; KEGG: pen:PSEEN3646 citrate synthase
YP_001341654.1	KEGG: cps:CPS_3195 hypothetical protein
YP_001341655.1	TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: vfi:VF1928 phosphoribosylaminoimidazole synthetase
YP_001341656.1	TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: pha:PSHAa1948 phosphoribosylglycinamide formyltransferase 1
YP_001341657.1	KEGG: hch:HCH_01904 hypothetical protein
YP_001341658.1	KEGG: mfa:Mfla_2295 molybdopterin-guanine dinucleotide biosynthesis protein A
YP_001341659.1	PFAM: glycosyl transferase family 3; KEGG: mag:amb3621 anthranilate phosphoribosyltransferase
YP_001341660.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: tcx:Tcr_1159 molybdopterin oxidoreductase
YP_001341661.1	TIGRFAM: nitrite reductase [NAD(P)H], small subunit; KEGG: cps:CPS_4946 nitrite reductase [NAD(P)H], small subunit
YP_001341662.1	TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: maq:Maqu_0172 nitrite reductase (NAD(P)H), large subunit
YP_001341663.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mag:amb0533 NAD(P)H-nitrite reductase
YP_001341664.1	TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tcx:Tcr_1155 nitrate transport ATP-binding subunits C and D
YP_001341665.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tcx:Tcr_1154 binding-protein-dependent transport systems inner membrane component
YP_001341666.1	KEGG: vpa:VPA1058 putative nitrate transport protein
YP_001341667.1	KEGG: aeh:Mlg_1703 nitrate transporter
YP_001341668.1	PFAM: response regulator receiver; ANTAR domain protein; KEGG: mca:MCA0588 response regulator NasT
YP_001341669.1	PFAM: regulatory protein LuxR; KEGG: nmu:Nmul_A2674 two component transcriptional regulator, LuxR family
YP_001341670.1	TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: aha:AHA_2700 secretion protein, HlyD family
YP_001341671.1	PFAM: ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: aha:AHA_2701 toxin secretion ATP-binding protein
YP_001341672.1	KEGG: azo:azo0651 conserved hypothetical protein
YP_001341673.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: dps:DP0517 hypothetical protein
YP_001341674.1	KEGG: ppr:PBPRB0581 hypothetical protein
YP_001341675.1	PFAM: protein of unknown function DUF1244; KEGG: sde:Sde_2363 deoxycytidine triphosphate deaminase
YP_001341676.1	PFAM: DTW domain containing protein; KEGG: pha:PSHAa1321 hypothetical protein
YP_001341677.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_001341678.1	KEGG: vfi:VFA0126 DNA-3-methyladenine glycosylase
YP_001341679.1	PFAM: DSBA oxidoreductase; KEGG: jan:Jann_2316 DsbA oxidoreductase
YP_001341680.1	PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pha:PSHAb0282 putative bacterioferritin-associated ferredoxin
YP_001341681.1	TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: pha:PSHAb0283 bacterioferritin (cytochrome b-1) (cytochrome b-557)
YP_001341682.1	TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: pha:PSHAb0284 bacterioferritin (cytochrome b-1) (cytochrome b-557)
YP_001341683.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_001341685.1	PFAM: GCN5-related N-acetyltransferase; KEGG: aha:AHA_0849 ribosomal-protein-alanine acetyltransferase
YP_001341686.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: vpa:VP1774 putative carbon-nitrogen hydrolase
YP_001341687.1	catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis
YP_001341688.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_001341689.1	TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: maq:Maqu_2408 lipoate-protein ligase B
YP_001341690.1	PFAM: protein of unknown function DUF493; KEGG: pau:PA14_12110 hypothetical protein
YP_001341691.1	PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: hch:HCH_05839 D-alanyl-D-alanine carboxypeptidase
YP_001341692.1	TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: hch:HCH_05840 lipoprotein
YP_001341693.1	TIGRFAM: lytic murein transglycosylase B; KEGG: cvi:CV1609 peptidoglycan N-acetylmuramoylhydrolase
YP_001341694.1	TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: hch:HCH_05842 rod shape-determining protein RodA
YP_001341695.1	PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: maq:Maqu_2413 peptidoglycan glycosyltransferase
YP_001341696.1	PFAM: protein of unknown function DUF163; KEGG: vfi:VF0749 hypothetical protein
YP_001341697.1	TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: ppu:PP_4809 hypothetical protein
YP_001341698.1	TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; KEGG: hch:HCH_05846 nicotinate (nicotinamide) nucleotide adenylyltransferase
YP_001341699.1	TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: aldehyde dehydrogenase; KEGG: hch:HCH_05847 gamma-glutamyl phosphate reductase
YP_001341700.1	PFAM: protein of unknown function UPF0066; KEGG: aha:AHA_3034 conserved hypothetical protein, putative
YP_001341702.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_001341703.1	TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; KEGG: cps:CPS_2334 cytidylate kinase
YP_001341704.1	catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate and catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_001341705.1	TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: maq:Maqu_1023 chorismate mutase
YP_001341706.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine
YP_001341707.1	TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; KEGG: psp:PSPPH_3667 DNA gyrase, A subunit
YP_001341708.1	TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: csa:Csal_1858 ubiquinone biosynthesis O-methyltransferase
YP_001341709.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sfr:Sfri_2572 short-chain dehydrogenase/reductase SDR
YP_001341710.1	PFAM: peptidase M16 domain protein; KEGG: hch:HCH_05001 secreted/periplasmic Zn-dependent peptidase, insulinase-like
YP_001341712.1	enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity
YP_001341713.1	PFAM: glycosyl transferase group 1; KEGG: pha:PSHAb0237 putative glycosyltransferase
YP_001341714.1	PFAM: protein of unknown function DUF1289; KEGG: hch:HCH_02198 predicted Fe-S protein
YP_001341715.1	PFAM: protein of unknown function DUF28; KEGG: sde:Sde_1551 transcriptional regulator, MerR family
YP_001341716.1	PFAM: aminotransferase class I and II; KEGG: mca:MCA2997 aminotransferase, class I
YP_001341717.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: aha:AHA_4207 acetyltransferase
YP_001341718.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: gsu:GSU3119 sensor histidine kinase
YP_001341719.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ppd:Ppro_2228 two component transcriptional regulator, winged helix family
YP_001341720.1	PFAM: Auxin Efflux Carrier; KEGG: azo:azo2550 putative malonate transporter
YP_001341721.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: vch:VCA0141 C4-dicarboxylate transport sensor protein, putative
YP_001341722.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: vvu:VV2_0986 response regulator
YP_001341724.1	TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: sde:Sde_1724 ATPase
YP_001341725.1	KEGG: hch:HCH_05569 hypothetical protein
YP_001341726.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: vch:VC1868 methyl-accepting chemotaxis protein
YP_001341727.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_001341728.1	PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; KEGG: pin:Ping_2776 5'-3' exonuclease
YP_001341730.1	TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: vvy:VV0583 outer membrane protein
YP_001341731.1	catalyzes the removal of amino acids from the N termini of peptides
YP_001341732.1	TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; KEGG: pfo:Pfl_1679 peptidase S41A, protease
YP_001341733.1	KEGG: aha:AHA_1533 conserved helix-turn-helix protein
YP_001341734.1	PFAM: thymidine kinase; KEGG: sdy:SDY_1290 thymidine kinase
YP_001341735.1	PFAM: putative exonuclease RdgC; KEGG: pau:PA14_21790 putative recombination associated protein RdgC
YP_001341736.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: cbu:CBU_1362 cation-efflux family protein
YP_001341737.1	PFAM: protein of unknown function DUF195; KEGG: pau:PA14_51000 hypothetical protein
YP_001341738.1	PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: plu:plu4400 hypothetical protein
YP_001341739.1	transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA
YP_001341740.1	PFAM: pseudouridine synthase; KEGG: pmu:PM1836 ribosomal large subunit pseudouridine synthase A
YP_001341742.1	KEGG: tdn:Tmden_1934 hypothetical protein
YP_001341743.1	KEGG: hypothetical protein
YP_001341744.1	PFAM: regulatory protein TetR; KEGG: rle:pRL100457 putative TetR family transcriptional regulator
YP_001341745.1	PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: rle:pRL100459 hypothetical protein
YP_001341748.1	PFAM: alpha/beta hydrolase fold; KEGG: abo:ABO_1331 hydrolase
YP_001341749.1	KEGG: abo:ABO_1928 hypothetical protein
YP_001341750.1	KEGG: sil:SPO1290 hypothetical protein
YP_001341751.1	PFAM: histone deacetylase superfamily; KEGG: hch:HCH_06553 deacetylases, including yeast histone deacetylase and acetoin utilization protein
YP_001341752.1	PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: hch:HCH_00737 HD-GYP domain
YP_001341753.1	PFAM: protein of unknown function DUF55; KEGG: vvy:VV0094 hypothetical protein
YP_001341754.1	KEGG: hch:HCH_00697 hypothetical protein
YP_001341755.1	KEGG: csa:Csal_2334 tRNA-i(6)A37 modification enzyme MiaB; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB
YP_001341756.1	PFAM: PhoH family protein; KEGG: pau:PA14_12330 PhoH family protein
YP_001341757.1	PFAM: protein of unknown function UPF0054; KEGG: vpa:VP0731 hypothetical protein
YP_001341758.1	PFAM: CBS domain containing protein; transporter-associated region; KEGG: ppu:PP_4789 metal ion transporter, putative
YP_001341759.1	TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pst:PSPTO_4808 apolipoprotein N-acyltransferase
YP_001341761.1	TIGRFAM: leucyl-tRNA synthetase; KEGG: abo:ABO_1947 leucine-tRNA synthetase
YP_001341762.1	KEGG: plu:plu1302 rare lipoprotein B precursor
YP_001341763.1	TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: pfo:Pfl_4959 DNA polymerase III, delta subunit
YP_001341764.1	PFAM: chemotaxis sensory transducer; domain of unknown function DUF1745; KEGG: bja:blr4191 hypothetical protein
YP_001341765.1	KEGG: sus:Acid_4975 hypothetical protein
YP_001341766.1	KEGG: hch:HCH_02223 conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
YP_001341767.1	PFAM: cyclic nucleotide-binding; KEGG: aav:Aave_1951 lipolytic enzyme, G-D-S-L family
YP_001341768.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: csa:Csal_2828 lysine exporter protein (LysE/YggA)
YP_001341769.1	TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: aha:AHA_3801 dihydrodipicolinate synthase
YP_001341770.1	PFAM: Transglycosylase-associated protein; KEGG: pin:Ping_1197 transglycosylase-associated protein
YP_001341771.1	KEGG: mpt:Mpe_A0426 putative mobilization protein MobD
YP_001341772.1	KEGG: csa:Csal_0251 hypothetical protein
YP_001341773.1	PFAM: Tannase and feruloyl esterase; KEGG: reu:Reut_B4873 feruloyl esterase
YP_001341774.1	PFAM: sodium/hydrogen exchanger; KEGG: pha:PSHAb0496 putative Na+/H+ antiporter
YP_001341775.1	PFAM: alpha/beta hydrolase fold; KEGG: sfr:Sfri_1987 alpha/beta hydrolase fold
YP_001341776.1	PFAM: homocysteine S-methyltransferase; KEGG: shw:Sputw3181_0088 homocysteine S-methyltransferase
YP_001341777.1	PFAM: protein of unknown function DUF330; KEGG: ppr:PBPRB1159 hypothetical protein
YP_001341778.1	PFAM: Mammalian cell entry related domain protein; KEGG: aha:AHA_3795 paraquat-inducible protein B
YP_001341779.1	TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A; KEGG: aha:AHA_3796 paraquat-inducible protein A
YP_001341780.1	KEGG: vvy:VV1824 hypothetical protein
YP_001341781.1	PFAM: Late embryogenesis abundant protein 2; SMART: Water Stress and Hypersensitive response domain protein; KEGG: ath:AT2G44060 unknown protein
YP_001341782.1	KEGG: mag:amb0306 hypothetical protein
YP_001341783.1	PFAM: protein of unknown function DUF486; KEGG: vvy:VV1505 hypothetical protein
YP_001341784.1	catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA
YP_001341785.1	PFAM: cytochrome B561; KEGG: rsp:RSP_1574 cytochrome b562
YP_001341786.1	KEGG: atc:AGR_L_852 hypothetical protein
YP_001341787.1	TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: bms:BR1197 ThiJ/PfpI family protein
YP_001341788.1	PFAM: MscS Mechanosensitive ion channel; KEGG: gfo:orf49 small-conductance mechanosensitive ion channel protein
YP_001341789.1	PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: cps:CPS_1844 conserved hypothetical protein TIGR00427
YP_001341790.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: cvi:CV4044 probable transporter, LysE family
YP_001341791.1	PFAM: alpha/beta hydrolase fold; KEGG: aha:AHA_3581 probable hydrolase protein, putative
YP_001341792.1	PFAM: NIPSNAP family containing protein; KEGG: aav:Aave_0043 NIPSNAP family containing protein
YP_001341793.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cac:CAC2539 predicted acetyltransferase
YP_001341794.1	PFAM: GCN5-related N-acetyltransferase; KEGG: sdn:Sden_2760 GCN5-related N-acetyltransferase
YP_001341796.1	KEGG: son:SO4299 chloramphenicol acetyltransferase
YP_001341799.1	PFAM: Integrase catalytic region; KEGG: pae:PA0978 hypothetical protein
YP_001341800.1	PFAM: transposase IS3/IS911 family protein; KEGG: pau:PA14_51620 possible transposase
YP_001341801.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ilo:IL1591 glyoxalase/dioxygenase superfamily protein
YP_001341802.1	KEGG: vvu:VV1_2512 hypothetical protein
YP_001341803.1	KEGG: bce:BC4946 hypothetical protein
YP_001341804.1	PFAM: putative transposase; KEGG: maq:Maqu_0979 putative transposase
YP_001341805.1	PFAM: phage integrase family protein; KEGG: maq:Maqu_0978 phage integrase family protein
YP_001341807.1	TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD synthase; KEGG: hch:HCH_05923 NAD synthase
YP_001341811.1	KEGG: hch:HCH_10022 Tfp pilus assembly protein FimT
YP_001341812.1	KEGG: csa:Csal_2423 alpha/beta hydrolase
YP_001341813.1	TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: psb:Psyr_2080 ParA-aminobenzoate synthase, component I
YP_001341814.1	PFAM: NUDIX hydrolase; KEGG: rsp:RSP_1206 putative phosphohydrolase (MutT/NUDIX family protein)
YP_001341815.1	catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite
YP_001341816.1	PFAM: regulatory protein LysR; KEGG: son:SO0997 transcriptional regulator, LysR family
YP_001341817.1	dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate
YP_001341818.1	PFAM: transposase IS3/IS911 family protein; KEGG: pau:PA14_51620 possible transposase
YP_001341819.1	PFAM: Integrase catalytic region; KEGG: pae:PA0978 hypothetical protein
YP_001341821.1	sodium/drug antiporter; functions as a Na(+)-driven Na(+)/drug antiporter; member of multidrug and toxic compound extrusion (MATE) family; extrudes acriflavines and other compounds by utilizing the sodium gradient
YP_001341822.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vfi:VFA0935 transcriptional regulators, LysR family
YP_001341823.1	PFAM: GCN5-related N-acetyltransferase; KEGG: oih:OB0334 phosphinothricin N-acetyltransferase
YP_001341824.1	KEGG: hch:HCH_06000 hypothetical protein
YP_001341825.1	PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: sde:Sde_0815 N-acetylglucosaminyltransferase, MurG
YP_001341826.1	PFAM: cytochrome c biogenesis protein transmembrane region; Thioredoxin domain; KEGG: hch:HCH_02282 thiol:disulfide interchange protein
YP_001341827.1	TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: sde:Sde_0812 phospho-N-acetylmuramoyl-pentapeptide transferase
YP_001341828.1	TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: csa:Csal_2285 acetyl-CoA carboxylase, biotin carboxylase
YP_001341829.1	TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: methyltransferase small; ribosomal L11 methyltransferase; KEGG: sdy:SDY_3436 methylase for 50S ribosomal subunit protein L11
YP_001341830.1	TIGRFAM: MJ0042 family finger-like protein; KEGG: pfl:PFL_0669 hypothetical protein
YP_001341831.1	TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: pfo:Pfl_0615 dihydrouridine synthase TIM-barrel protein nifR3
YP_001341832.1	PFAM: helix-turn-helix Fis-type; KEGG: ppu:PP_4821 DNA-binding protein Fis
YP_001341833.1	TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: MGS domain protein; AICARFT/IMPCHase bienzyme formylation region; KEGG: maq:Maqu_3450 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
YP_001341834.1	TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; KEGG: vpa:VP2898 phosphoribosylamine-glycine ligase
YP_001341836.1	PFAM: Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; KEGG: pfo:Pfl_4944 periplasmic sensor hybrid histidine kinase
YP_001341837.1	PFAM: histidine triad (HIT) protein; KEGG: rma:Rmag_0822 histidine triad (HIT) protein
YP_001341838.1	KEGG: pfl:PFL_5617 conserved hypothetical protein
YP_001341839.1	TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: pae:PA1049 pyridoxine 5'-phosphate oxidase
YP_001341840.1	KEGG: sye:Syncc9902_0853 possible alkylated DNA repair protein
YP_001341841.1	PFAM: protein of unknown function DUF1624; KEGG: bms:BR1178 hypothetical protein
YP_001341842.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_001341843.1	B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA
YP_001341844.1	PFAM: ferredoxin; KEGG: stm:STM2279 putative ferredoxin
YP_001341845.1	PFAM: CDP-alcohol phosphatidyltransferase; KEGG: ppr:PBPRA2117 putative phosphatidylglycerophosphate synthase
YP_001341846.1	PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: cps:CPS_1579 hydrolase, alpha/beta fold family
YP_001341847.1	KEGG: azo:azo3437 conserved hypothetical secreted protein
YP_001341848.1	PFAM: TonB-dependent receptor plug; KEGG: pfo:Pfl_4209 TonB-dependent receptor
YP_001341849.1	catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis
YP_001341850.1	PFAM: protein of unknown function DUF37; KEGG: pcu:pc1368 hypothetical protein
YP_001341851.1	PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pha:PSHAa0699 regulator in two-component regulatory system ; LuxR
YP_001341852.1	TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: ilo:IL2007 AMP-(fatty) acid ligase
YP_001341853.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: hch:HCH_02824 SAM-dependent methyltransferase
YP_001341854.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sde:Sde_2037 putative haloacid dehalogenase-like hydrolase
YP_001341855.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: vpa:VPA0188 immunogenic protein
YP_001341856.1	TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vvu:VV2_0984 TRAP-type uncharacterized transport system, fused permease component
YP_001341857.1	PFAM: peptidase M23B; KEGG: hch:HCH_01708 membrane protein related to metalloendopeptidase
YP_001341858.1	TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: sfr:Sfri_0748 formate dehydrogenase family accessory protein FdhD
YP_001341859.1	PFAM: cation transporter; KEGG: hch:HCH_02555 trk-type K+ transport system, membrane components
YP_001341860.1	PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: mag:amb3903 electron transfer flavoprotein, alpha subunit
YP_001341861.1	PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: pen:PSEEN3658 electron transfer flavoprotein beta-subunit
YP_001341862.1	PFAM: thioesterase superfamily protein; KEGG: rpa:RPA1788 possible 4-hydroxybenzoyl-CoA thioesterase
YP_001341863.1	catalyzes the conversion of ferulic acid to feruloyl-CoA
YP_001341864.1	PFAM: acyl-CoA dehydrogenase domain protein; KEGG: azo:azo2494 putative acyl-CoA dehydrogenase
YP_001341865.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ppu:PP_2214 3-hydroxyacyl-CoA dehydrogenase FadB2x
YP_001341866.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: eba:ebA5318 enoyl-CoA hydratase
YP_001341867.1	PFAM: Thiolase; KEGG: eba:ebA2049 putative beta-oxoacyl-CoA thiolase
YP_001341868.1	PFAM: coenzyme A transferase; KEGG: lmf:LMOf2365_2204 propionate CoA-transferase
YP_001341869.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: hch:HCH_05774 TRAP-type C4-dicarboxylate transport system, periplasmic component
YP_001341870.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: hch:HCH_05774 TRAP-type C4-dicarboxylate transport system, periplasmic component
YP_001341871.1	KEGG: csa:Csal_0283 hypothetical protein
YP_001341872.1	PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: csa:Csal_0282 TRAP dicarboxylate transporter-DctM subunit
YP_001341873.1	PFAM: regulatory protein MarR; KEGG: eba:ebA5386 bacterial regulatory protein, MarR
YP_001341874.1	TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: pae:PA4112 probable sensor/response regulator hybrid
YP_001341875.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: maq:Maqu_3853 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_001341876.1	PFAM: inositol monophosphatase; KEGG: sit:TM1040_1437 inositol monophosphatase
YP_001341877.1	PFAM: DNA polymerase beta domain protein region; KEGG: plt:Plut_1762 nucleotidyltransferase family protein
YP_001341878.1	PFAM: protein of unknown function DUF86; KEGG: psa:PST_1416 nucleotidyltransferase
YP_001341879.1	PFAM: Radical SAM domain protein; KEGG: ppr:PBPRA1610 hypothetical protein
YP_001341880.1	KEGG: vvy:VV2195 hypothetical protein
YP_001341883.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vpa:VPA0065 putative LysR-family transcriptional regulatory protein
YP_001341884.1	PFAM: beta-lactamase domain protein; KEGG: vpa:VPA0064 hypothetical protein
YP_001341885.1	KEGG: vpa:VPA0063 putative protein-disulfide isomerase
YP_001341886.1	TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: ppu:PP_3713 catechol 1,2-dioxygenase
YP_001341887.1	PFAM: Muconolactone delta-isomerase; KEGG: bam:Bamb_6586 muconolactone delta-isomerase
YP_001341888.1	TIGRFAM: muconate and chloromuconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: reh:H16_B0536 muconate cyclo-isomerase
YP_001341889.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: vpa:VP0910 C4-dicarboxylate-binding periplasmic protein
YP_001341890.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reu:Reut_A1688 regulatory protein, LysR:LysR, substrate-binding
YP_001341891.1	PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: csa:Csal_0297 transcriptional regulator, IclR family
YP_001341892.1	PFAM: coenzyme A transferase; KEGG: csa:Csal_0299 coenzyme A transferase
YP_001341893.1	PFAM: coenzyme A transferase; KEGG: csa:Csal_0300 coenzyme A transferase
YP_001341894.1	TIGRFAM: acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; KEGG: csa:Csal_0301 beta-ketoadipyl CoA thiolase
YP_001341895.1	PFAM: alpha/beta hydrolase fold; KEGG: csa:Csal_0302 carboxymuconolactone decarboxylase
YP_001341896.1	KEGG: tbd:Tbd_1279 hypothetical protein
YP_001341897.1	PFAM: short chain fatty acid transporter; KEGG: fnu:FN1858 short-chain fatty acids transporter
YP_001341898.1	TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: hch:HCH_01365 acetyl-CoA acetyltransferase
YP_001341899.1	TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; KEGG: pfl:PFL_2322 3-oxoacid CoA-transferase subunit B family enzyme
YP_001341900.1	TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; KEGG: pfl:PFL_2323 3-oxoacid CoA-transferase subunit A family enzyme
YP_001341901.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:Pfl_2077 transcriptional regulator, LysR family
YP_001341902.1	PFAM: regulatory protein LysR; KEGG: bja:blr6429 transcriptional regulatory protein
YP_001341904.1	PFAM: glycoside hydrolase family 3 domain protein; KEGG: pin:Ping_0139 glycoside hydrolase, family 3 domain protein
YP_001341905.1	TIGRFAM: Formaldehyde dehydrogenase glutathione-independent; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pat:Patl_0850 alcohol dehydrogenase GroES-like
YP_001341906.1	PFAM: Polypeptide-transport-associated domain protein ShlB-type; KEGG: dar:Daro_2107 probable activation/secretion signal peptide protein
YP_001341907.1	TIGRFAM: filamentous haemagglutinin family outer membrane protein; adhesin HecA family; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: pin:Ping_2394 filamentous haemagglutinin family outer membrane protein
YP_001341908.1	TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: nha:Nham_2232 protein of unknown function UPF0031
YP_001341909.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pfo:Pfl_3899 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_001341910.1	PFAM: aminotransferase class-III; KEGG: pol:Bpro_0052 aminotransferase class-III
YP_001341911.1	PFAM: regulatory protein AsnC/Lrp family; KEGG: bxe:Bxe_C0783 transcriptional regulator, AsnC family
YP_001341912.1	TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: reu:Reut_B4277 succinic semialdehyde dehydrogenase
YP_001341913.1	PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: reu:Reut_A3449 succinylglutamate desuccinylase/aspartoacylase
YP_001341914.1	PFAM: FAD dependent oxidoreductase; KEGG: pde:Pden_4956 FAD dependent oxidoreductase
YP_001341915.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: azo:azo0206 putative AraC-family transcriptional regulator
YP_001341916.1	PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: bch:Bcen2424_6676 ABC transporter related
YP_001341917.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B1497 ABC peptide transporter, inner membrane subunit
YP_001341918.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B1496 ABC peptide transporter, inner membrane subunit
YP_001341919.1	PFAM: extracellular solute-binding protein family 5; KEGG: psp:PSPPH_5030 peptide ABC transporter, periplasmic peptide-binding protein
YP_001341920.1	PFAM: FAD dependent oxidoreductase; KEGG: bam:Bamb_6358 FAD dependent oxidoreductase
YP_001341921.1	TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bam:Bamb_6351 haloacid dehalogenase, type II
YP_001341922.1	PFAM: aldehyde dehydrogenase; KEGG: bxe:Bxe_B1492 aldehyde dehydrogenase
YP_001341923.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_PF00334 putative acetyltransferase protein
YP_001341924.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bch:Bcen2424_6683 GCN5-related N-acetyltransferase
YP_001341925.1	TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: reu:Reut_C5899 tartrate dehydrogenase
YP_001341926.1	PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: sme:SMa1872 putative threonine dehydratase
YP_001341927.1	PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: sme:SMa1871 putative ornithine cyclodeaminase 2
YP_001341928.1	PFAM: protein of unknown function DUF861 cupin_3; KEGG: aav:Aave_2183 protein of unknown function DUF861, cupin_3
YP_001341929.1	KEGG: sde:Sde_2951 hypothetical protein
YP_001341930.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pat:Patl_1719 transcriptional regulator, LysR family
YP_001341931.1	PFAM: class II aldolase/adducin family protein; KEGG: azo:azo2608 conserved hypothetical protein
YP_001341932.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pin:Ping_0648 TRAP dicarboxylate transporter-DctP subunit
YP_001341933.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pin:Ping_0646 TRAP dicarboxylate transporter, DctM subunit
YP_001341934.1	KEGG: pin:Ping_0647 tripartite ATP-independent periplasmic (TRAP) C4-dicarboxylate transporter subunit DctQ
YP_001341935.1	catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA
YP_001341936.1	TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; Ferric reductase NAD binding; KEGG: ppu:PP_3274 ring-hydroxylation complex protein 4
YP_001341937.1	TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: ppu:PP_3275 ring-hydroxylation complex protein 3
YP_001341938.1	TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: pfl:PFL_3135 phenylacetate-CoA oxygenase, PaaI subunit
YP_001341939.1	with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation
YP_001341940.1	with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA
YP_001341941.1	TIGRFAM: phenylacetate-CoA ligase; KEGG: pen:PSEEN2796 phenylacetyl-CoA ligase
YP_001341942.1	catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA
YP_001341943.1	TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN2794 phenylacetic acid degradation protein
YP_001341944.1	converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation
YP_001341945.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_001341946.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ppu:PP_3284 enoyl-CoA hydratase/isomerase
YP_001341947.1	KEGG: pen:PSEEN2790 regulatory PhaM protein
YP_001341948.1	TIGRFAM: phenylacetic acid degradation operon negative regulatory protein PaaX; PFAM: PaaX domain protein; PaaX domain protein domain; KEGG: pfl:PFL_3128 phenylacetic acid degradation operon negative regulatory protein PaaX
YP_001341949.1	PFAM: ABC transporter transmembrane region; SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: maq:Maqu_0009 ABC transporter related
YP_001341950.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: sme:SMb21372 putative transcriptional regulator, LacI family protein
YP_001341951.1	PFAM: D-tagatose-bisphosphate aldolase class II accessory protein AgaZ; KEGG: vfi:VFA1005 tagatose-6-phosphate kinase
YP_001341952.1	PFAM: PfkB domain protein; KEGG: sbo:SBO_3129 possible carbohydrate kinase
YP_001341953.1	PFAM: inner-membrane translocator; KEGG: ecv:APECO1_3187 putative ribose transport system permease protein RbsC
YP_001341954.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ecp:ECP_3345 putative sugar uptake ABC transporter ATP-binding protein
YP_001341955.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ecv:APECO1_3185 putative ribose ABC transporter
YP_001341956.1	PFAM: inositol monophosphatase; KEGG: sit:TM1040_1437 inositol monophosphatase
YP_001341957.1	catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity
YP_001341958.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_001341959.1	PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; regulatory protein DeoR; KEGG: bmb:BruAb2_0364 transcriptional regulator, DeoR family
YP_001341960.1	PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; regulatory protein DeoR; KEGG: ecv:APECO1_1385 putative transcriptional regulator
YP_001341961.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bbr:BB3423 putative inner membrane protein
YP_001341962.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pol:Bpro_0089 tripartite ATP-independent periplasmic transporter, DctQ component
YP_001341963.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: aav:Aave_3447 TRAP dicarboxylate transporter, DctP subunit
YP_001341964.1	KEGG: pol:Bpro_0087 hypothetical protein
YP_001341965.1	PFAM: ribulose bisphosphate carboxylase large chain; KEGG: sme:SMb20393 putative ribulose bisphosphate carboxylaseoxygenase, large subunit protein
YP_001341966.1	PFAM: type III effector Hrp-dependent outers; KEGG: sme:SMb20394 hypothetical protein
YP_001341967.1	PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: sme:SMb20019 putative dihydrolipoamide succinyltransferase protein
YP_001341968.1	PFAM: dehydrogenase E1 component; Transketolase central region; Transketolase domain protein; KEGG: sme:SMb20020 putative pyruvate dehydrogenase E1 component,alpha and beta subunits protein
YP_001341969.1	PFAM: regulatory protein AsnC/Lrp family; KEGG: pau:PA14_12570 probable AsnC-family transcriptional regulator
YP_001341970.1	necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space
YP_001341971.1	involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan
YP_001341972.1	PFAM: protein of unknown function DUF980; KEGG: ilo:IL1810 predicted Zn-dependent hydrolase
YP_001341973.1	PFAM: regulatory protein LysR; KEGG: bur:Bcep18194_B2486 transcriptional regulator, LysR family
YP_001341974.1	catalyzes the formation of catechol from phenol
YP_001341975.1	PFAM: protein of unknown function DUF1486; KEGG: mca:MCA1820 hypothetical protein
YP_001341976.1	KEGG: mca:MCA1821 hypothetical protein
YP_001341977.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mca:MCA1822 hydrolase, carbon-nitrogen family
YP_001341978.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bmb:BruAb2_1091 transcriptional regulator, AraC family
YP_001341979.1	PFAM: aldehyde dehydrogenase; KEGG: sil:SPOA0104 aldehyde dehydrogenase family protein
YP_001341980.1	PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: nfa:nfa27850 putative oxidoreductase
YP_001341981.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bxe:Bxe_C0904 hypothetical protein
YP_001341982.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bja:bll6422 hypothetical protein
YP_001341983.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: bja:bll6423 hypothetical protein
YP_001341984.1	PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: bja:bll6425 hypothetical protein
YP_001341985.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: bja:bll6426 hypothetical protein
YP_001341986.1	KEGG: ppu:PP_3202 transporter, putative
YP_001341987.1	KEGG: ppu:PP_3201 BNR domain protein
YP_001341988.1	PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll6424 hypothetical protein
YP_001341989.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:bll6427 hypothetical protein
YP_001341990.1	PFAM: protein of unknown function DUF1329; KEGG: pol:Bpro_0131 protein of unknown function DUF1329
YP_001341991.1	PFAM: protein of unknown function DUF1302; KEGG: ppu:PP_3200 hypothetical protein
YP_001341992.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:blr6429 transcriptional regulatory protein
YP_001341993.1	PFAM: cyclase family protein; KEGG: nar:Saro_0716 putative cyclase
YP_001341994.1	KEGG: nar:Saro_0714 hypothetical protein
YP_001341995.1	KEGG: gbe:GbCGDNIH1_1167 hypothetical protein
YP_001341996.1	TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: psp:PSPPH_4339 cytochrome d ubiquinol oxidase, subunit II
YP_001341997.1	PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: reh:H16_B1177 bd-type quinol oxidase subunit II
YP_001341998.1	PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: ppr:PBPRB1592 hypothetical transcriptional regulator
YP_001341999.1	PFAM: uncharacterised conserved protein UCP030820; KEGG: pae:PA4129 hypothetical protein
YP_001342000.1	PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: pfl:PFL_2835 sulfite reductase (NADPH) hemoprotein, beta-component
YP_001342001.1	KEGG: pau:PA14_25840 putative electron transfer flavoprotein-ubiquinone oxidoreductase
YP_001342002.1	PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: ilo:IL0515 electron transfer flavoprotein, alpha subunit
YP_001342003.1	PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: ilo:IL0514 electron transfer flavoprotein, beta subunit
YP_001342004.1	PFAM: FAD linked oxidase domain protein; KEGG: rpc:RPC_2091 FAD linked oxidase-like
YP_001342005.1	PFAM: protein of unknown function DUF112 transmembrane; KEGG: bha:BH2009 hypothetical protein
YP_001342007.1	PFAM: Uncharacterized protein UPF0065; KEGG: pna:Pnap_0869 uncharacterized protein UPF0065
YP_001342008.1	PFAM: protein of unknown function DUF1338; KEGG: pfl:PFL_2235 hypothetical protein
YP_001342009.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: vvy:VV1566 hypothetical protein
YP_001342010.1	PFAM: Endoribonuclease L-PSP; KEGG: vvy:VV1565 putative translation initiation inhibitor
YP_001342011.1	catalyzes the formation of L-proline from L-ornithine
YP_001342012.1	TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: pen:PSEEN3095 3,4-dihydroxyphenylacetate 2,3-dioxygenase (homoprotocatechuate 2,3-dioxygenase) (HPC dioxygenase)
YP_001342013.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pin:Ping_0646 TRAP dicarboxylate transporter, DctM subunit
YP_001342014.1	KEGG: pin:Ping_0647 tripartite ATP-independent periplasmic (TRAP) C4-dicarboxylate transporter subunit DctQ
YP_001342015.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pin:Ping_0648 TRAP dicarboxylate transporter-DctP subunit
YP_001342016.1	PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: pmu:PM1532 5-carboxymethyl-2-hydroxymuconate isomerase
YP_001342017.1	TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: sbo:SBO_4411 5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase
YP_001342018.1	PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; KEGG: plu:plu4288 hypothetical protein
YP_001342019.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: oih:OB2866 decarboxylase / 4-hydroxyphenylacetate degradation bifunctional isomerase
YP_001342020.1	TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit; PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: plu:plu0989 similar to C-terminal region of 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpaG [includes: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (HHDD isomerase); 5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxylase (OPET decarboxylase)]
YP_001342021.1	TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Hydratase/decarboxylase; KEGG: hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase
YP_001342022.1	TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase; KEGG: plu:plu0982 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
YP_001342023.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN3091 4-hydroxyphenylacetate catabolism regulatory protein HpaA
YP_001342024.1	PFAM: protein of unknown function DUF336; KEGG: sso:SSO1224 hypothetical protein
YP_001342025.1	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: plu:plu0985 hypothetical protein
YP_001342026.1	PFAM: protein of unknown function DUF112 transmembrane; KEGG: vvy:VV1571 hypothetical protein
YP_001342027.1	KEGG: vvy:VV1570 hypothetical protein
YP_001342028.1	PFAM: UspA domain protein; KEGG: vvy:VV1568 universal stress protein
YP_001342029.1	PFAM: aldehyde dehydrogenase; KEGG: vvy:VV1572 NAD-dependent aldehyde dehydrogenase
YP_001342030.1	PFAM: Uncharacterized protein UPF0065; KEGG: vvy:VV1569 hypothetical protein
YP_001342031.1	PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN3105 P-hydroxyphenylacetate hydroxylase C2:oxygenase component
YP_001342032.1	PFAM: flavin reductase domain protein FMN-binding; KEGG: pen:PSEEN3104 P-hydroxyphenylacetate hydroxylase C1:reductase component
YP_001342033.1	PFAM: major facilitator superfamily MFS_1; KEGG: rpd:RPD_3380 drug resistance transporter Bcr/CflA subfamily
YP_001342034.1	TIGRFAM: homoprotocatechuate degradation operon regulator, HpaR; PFAM: regulatory protein MarR; KEGG: reh:H16_A1367 transcriptional regulator, MarR-family
YP_001342035.1	PFAM: luciferase family protein; KEGG: bca:BCE_2096 bacterial luciferase family protein
YP_001342036.1	TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: bmb:BruAb1_1628 GabD, succinate-semialdehyde dehydrogenase
YP_001342037.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pst:PSPTO_4528 transcriptional regulator, AraC family
YP_001342038.1	KEGG: pst:PSPTO_4527 hypothetical protein
YP_001342039.1	PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_6406 major facilitator superfamily MFS_1
YP_001342040.1	PFAM: Amidase; KEGG: pst:PSPTO_4526 6-aminohexanoate-cyclic-dimer hydrolase, putative
YP_001342041.1	KEGG: hch:HCH_05494 hypothetical protein
YP_001342042.1	PFAM: restriction modification system DNA specificity domain; KEGG: shn:Shewana3_3793 restriction modification system DNA specificity domain
YP_001342043.1	PFAM: N-6 DNA methylase; KEGG: abo:ABO_1830 type I restriction-modification system, M subunit
YP_001342044.1	PFAM: protein of unknown function DUF1016; KEGG: lpn:lpg1084 hypothetical protein
YP_001342045.1	PFAM: helicase domain protein; type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases; KEGG: abo:ABO_1832 type I restriction-modification system, R subunit
YP_001342046.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: hch:HCH_05030 sigma 54-dependent transcriptional activator
YP_001342047.1	KEGG: sdn:Sden_0299 hypothetical protein
YP_001342048.1	PFAM: Domain of unknown function DUF1814; KEGG: sdn:Sden_0300 hypothetical protein
YP_001342049.1	PFAM: Amidase; KEGG: ppu:PP_0613 amidase family protein
YP_001342050.1	TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pau:PA14_05810 N-carbamoyl-beta-alanine amidohydrolase
YP_001342051.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_3678 branched-chain amino acid ABC transporter, ATP-binding protein
YP_001342052.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_3677 branched-chain amino acid ABC transporter, ATP binding protein
YP_001342053.1	PFAM: inner-membrane translocator; KEGG: pfl:PFL_3676 branched-chain amino acid ABC transporter, permease protein
YP_001342054.1	PFAM: inner-membrane translocator; KEGG: ppu:PP_0618 branched-chain amino acid ABC transporter, permease protein
YP_001342055.1	KEGG: ppu:PP_0619 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein
YP_001342056.1	PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ppu:PP_0620 transcriptional regulator, GntR family
YP_001342057.1	PFAM: Sporulation domain protein; KEGG: csa:Csal_1265 sporulation related
YP_001342058.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_001342059.1	TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: maq:Maqu_0296 sulfate transporter
YP_001342060.1	TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; KEGG: mca:MCA0767 competence protein ComE, putative
YP_001342061.1	TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: vfi:VF1755 orotidine 5'-phosphate decarboxylase
YP_001342062.1	PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: csa:Csal_2154 TPR domain protein
YP_001342063.1	KEGG: csa:Csal_2153 hypothetical protein
YP_001342064.1	TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: cps:CPS_2336 integration host factor, beta subunit
YP_001342065.1	PFAM: Inorganic pyrophosphatase; KEGG: maq:Maqu_3439 inorganic diphosphatase
YP_001342066.1	TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: hch:HCH_02344 thioredoxin-disulfide reductase
YP_001342067.1	PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: hch:HCH_01736 molybdopterin biosynthesis protein MoeB
YP_001342068.1	PFAM: PfkB domain protein; KEGG: vfi:VF0911 inosine-guanosine kinase
YP_001342069.1	PFAM: CheW domain protein; KEGG: pau:PA14_45500 putative purine-binding chemotaxis protein CheW
YP_001342070.1	PFAM: import inner membrane translocase subunit Tim44; KEGG: vpa:VP0939 hypothetical protein
YP_001342071.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001342072.1	TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: ecs:ECs3676 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease
YP_001342073.1	TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: ypm:YP_2883 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease
YP_001342074.1	TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit; KEGG: aha:AHA_3976 exodeoxyribonuclease V, gamma subunit
YP_001342075.1	PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; KEGG: hch:HCH_04444 predicted signal transduction protein containing EAL and modified HD-GYP domains
YP_001342076.1	PFAM: thioesterase superfamily protein; KEGG: pat:Patl_0385 thioesterase superfamily
YP_001342077.1	KEGG: ilo:IL2412 hypothetical protein
YP_001342078.1	KEGG: cps:CPS_3093 hypothetical protein
YP_001342080.1	KEGG: tcx:Tcr_1421 hypothetical protein
YP_001342081.1	TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: csa:Csal_2134 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
YP_001342082.1	TIGRFAM: excinuclease ABC, C subunit; PFAM: Excinuclease ABC C subunit domain protein; helix-hairpin-helix motif; excinuclease ABC C subunit domain protein; UvrB/UvrC protein; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: pst:PSPTO_3023 excinuclease ABC, C subunit
YP_001342083.1	PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pst:PSPTO_3024 DNA-binding response regulator GacA
YP_001342084.1	KEGG: sde:Sde_0401 hypothetical protein
YP_001342086.1	TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: net:Neut_2304 sigma 54 modulation protein/ribosomal protein S30EA
YP_001342087.1	PFAM: protein of unknown function UPF0005; KEGG: azo:azo0911 probable carrier/transport protein
YP_001342088.1	PFAM: DsrE family protein; KEGG: vvy:VV3035 putative uncharacterized protein involved in oxidation of intracellular sulfur
YP_001342089.1	KEGG: cps:CPS_2348 putative sulfur oxidation protein DsrF
YP_001342091.1	PFAM: DsrC family protein; KEGG: hch:HCH_02545 dissimilatory sulfite reductase (desulfoviridin), gamma subunit
YP_001342092.1	TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: psp:PSPPH_3088 siroheme synthase
YP_001342093.1	TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); seryl-tRNA synthetase class IIa; KEGG: hch:HCH_02449 seryl-tRNA synthetase
YP_001342094.1	TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: hch:HCH_02448 integral membrane protein possibly involved in chromosome condensation
YP_001342095.1	PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: maq:Maqu_1548 AAA ATPase, central domain protein
YP_001342096.1	PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: pfo:Pfl_3585 outer membrane lipoprotein carrier protein LolA
YP_001342097.1	PFAM: cell divisionFtsK/SpoIIIE; KEGG: maq:Maqu_1550 cell divisionFtsK/SpoIIIE
YP_001342099.1	PFAM: leucyl/phenylalanyl-tRNA--protein transferase; KEGG: sde:Sde_1691 flavodoxin, long chain
YP_001342100.1	TIGRFAM: translation initiation factor IF-1; PFAM: RNA binding S1 domain protein; S1 IF1 family protein; KEGG: hch:HCH_02340 translation initiation factor IF-1
YP_001342101.1	TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: pau:PA14_30230 ATP-dependent clp protease, ATP-binding subunit ClpA
YP_001342102.1	PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: maq:Maqu_1758 ATP-dependent Clp protease adaptor protein ClpS
YP_001342103.1	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: ppu:PP_4010 cold-shock protein CspD
YP_001342104.1	PFAM: NUDIX hydrolase; KEGG: maq:Maqu_1761 NUDIX hydrolase
YP_001342105.1	PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: pau:PA14_30150 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
YP_001342106.1	HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis
YP_001342107.1	TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; KEGG: pae:PA2624 isocitrate dehydrogenase
YP_001342108.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_001342109.1	PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: psb:Psyr_3193 transcription factor jumonji, JmjC
YP_001342110.1	PFAM: GCN5-related N-acetyltransferase; KEGG: sde:Sde_1673 acyltransferase-like
YP_001342111.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: eca:ECA3561 LysR-family transcriptional regulator
YP_001342112.1	PFAM: aldehyde dehydrogenase; KEGG: eca:ECA3562 coniferyl aldehyde dehydrogenase
YP_001342113.1	PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: ppu:PP_0684 peptidyl-prolyl cis-trans isomerase, FKBP-type
YP_001342114.1	PFAM: UspA domain protein; KEGG: cps:CPS_1407 universal stress protein family
YP_001342115.1	decatenates replicating daughter chromosomes
YP_001342116.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: csa:Csal_1537 lysine exporter protein (LysE/YggA)
YP_001342117.1	KEGG: maq:Maqu_1768 hypothetical protein
YP_001342119.1	PFAM: phosphate transporter; KEGG: tcx:Tcr_0543 phosphate transporter
YP_001342120.1	TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; KEGG: cvi:CV2874 L-serine dehydratase
YP_001342121.1	PFAM: aldehyde dehydrogenase; KEGG: hch:HCH_01852 NAD-dependent aldehyde dehydrogenase
YP_001342122.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: hch:HCH_01851 AraC-type DNA-binding domain-containing protein
YP_001342123.1	PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_1927 major facilitator superfamily MFS_1
YP_001342124.1	PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: pen:PSEEN4778 transporter, MFS family
YP_001342125.1	KEGG: bam:Bamb_2379 hypothetical protein
YP_001342126.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_001342127.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pha:PSHAa0074 dihydrofolate reductase
YP_001342128.1	PFAM: dienelactone hydrolase; KEGG: pat:Patl_0207 twin-arginine translocation pathway signal
YP_001342129.1	KEGG: sde:Sde_1656 hypothetical protein
YP_001342130.1	PFAM: phosphoesterase PA-phosphatase related; KEGG: sde:Sde_1657 PAP2 superfamily protein
YP_001342131.1	PFAM: phospholipase A1; KEGG: sdn:Sden_0955 phospholipase A1
YP_001342132.1	PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: pha:PSHAa0329 5-carboxymethyl-2-hydroxymuconate delta isomerase
YP_001342133.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: atc:AGR_pAT_699 hypothetical protein
YP_001342134.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vei:Veis_4929 glyoxalase/bleomycin resistance protein/dioxygenase
YP_001342135.1	PFAM: chemotaxis sensory transducer; KEGG: she:Shewmr4_2097 methyl-accepting chemotaxis sensory transducer
YP_001342136.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: son:SO2118 SpoIIAA family protein
YP_001342137.1	PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: shn:Shewana3_2220 response regulator receiver and unknown domain protein
YP_001342138.1	PFAM: response regulator receiver; KEGG: shm:Shewmr7_1880 response regulator receiver protein
YP_001342139.1	PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: shn:Shewana3_2218 CheA signal transduction histidine kinases
YP_001342140.1	PFAM: CheW domain protein; KEGG: shn:Shewana3_2217 CheW protein
YP_001342141.1	TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: rpe:RPE_1195 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor
YP_001342142.1	PFAM: MCP methyltransferase CheR-type; KEGG: son:SO2124 chemotaxis protein methyltransferase CheR
YP_001342143.1	stimulates methylation of MCP proteins; PFAM: CheD family protein; KEGG: son:SO2125 chemotaxis protein CheD
YP_001342144.1	PFAM: CheB methylesterase; response regulator receiver; KEGG: pau:PA14_02180 glutamate methylesterase
YP_001342145.1	PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3340 integrase, catalytic region
YP_001342146.1	KEGG: dde:Dde_2987 transposase
YP_001342147.1	PFAM: ferredoxin-dependent glutamate synthase; KEGG: hch:HCH_00332 glutamate synthase domain 2
YP_001342148.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: hch:HCH_00494 predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain
YP_001342149.1	PFAM: protein of unknown function DUF839; KEGG: rde:RD1_A0062 hypothetical protein
YP_001342150.1	PFAM: protein of unknown function DUF419; KEGG: abo:ABO_0644 hypothetical protein
YP_001342151.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pat:Patl_4180 ABC transporter related
YP_001342154.1	KEGG: pat:Patl_3462 hypothetical protein
YP_001342155.1	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: pha:PSHAb0318 putative membrane protein with CBS regulatory domain
YP_001342156.1	KEGG: pat:Patl_0515 hypothetical protein
YP_001342157.1	PFAM: protein of unknown function DUF1460; KEGG: lpn:lpg0564 hypothetical protein
YP_001342159.1	PFAM: Thioredoxin domain; KEGG: pat:Patl_1907 thioredoxin domain
YP_001342160.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ppr:PBPRB0453 hypothetical protein
YP_001342161.1	PFAM: protein of unknown function UPF0153; KEGG: sdn:Sden_2221 protein of unknown function UPF0153
YP_001342162.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: shw:Sputw3181_1958 methyl-accepting chemotaxis sensory transducer
YP_001342163.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: shw:Sputw3181_1958 methyl-accepting chemotaxis sensory transducer
YP_001342164.1	PFAM: EAL domain protein; KEGG: rpb:RPB_3230 diguanylate cyclase/phosphodiesterase
YP_001342165.1	PFAM: helix-turn-helix domain protein; KEGG: mta:Moth_0278 transcriptional regulator, XRE family
YP_001342166.1	TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: net:Neut_0487 channel protein, hemolysin III family protein
YP_001342167.1	PFAM: amidohydrolase 2; KEGG: saz:Sama_1464 hypothetical protein
YP_001342168.1	TIGRFAM: putative undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; KEGG: dps:DP2384 undecaprenyl-diphosphatase
YP_001342169.1	mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators
YP_001342170.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: cvi:CV4135 hypothetical protein
YP_001342171.1	KEGG: hch:HCH_00523 hypothetical protein
YP_001342172.1	PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: hch:HCH_00524 DnaJ-class molecular chaperone
YP_001342173.1	PFAM: regulatory protein LuxR; KEGG: pha:PSHAa2120 transcriptional regulator
YP_001342174.1	KEGG: pha:PSHAa2121 hypothetical protein
YP_001342175.1	PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pha:PSHAa2122 hypothetical protein
YP_001342176.1	KEGG: pha:PSHAa2123 hypothetical protein
YP_001342177.1	KEGG: pha:PSHAa2124 hypothetical protein
YP_001342178.1	KEGG: pha:PSHAa2125 hypothetical protein
YP_001342179.1	KEGG: pha:PSHAa2126 hypothetical protein
YP_001342180.1	PFAM: carbon starvation protein CstA; KEGG: vvy:VV0693 carbon starvation protein
YP_001342181.1	unknown function; when overproduced it confers drug-resistance
YP_001342182.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; KEGG: vvu:VV1_0502 putative regulator of cell autolysis
YP_001342183.1	PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: shw:Sputw3181_0744 uncharacterized domain
YP_001342184.1	PFAM: Lytic transglycosylase catalytic; KEGG: vvu:VV1_1513 soluble lytic murein transglycosylase
YP_001342185.1	KEGG: bxe:Bxe_C1293 hypothetical protein
YP_001342186.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: cps:CPS_1267 methyl-accepting chemotaxis protein
YP_001342187.1	PFAM: Gluconate transporter; Citrate transporter; KEGG: ctc:CTC00709 integral membrane permease
YP_001342188.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: cps:CPS_1431 alcohol dehydrogenase, iron-containing
YP_001342189.1	TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: cps:CPS_1432 methylmalonate-semialdehyde dehydrogenase
YP_001342190.1	PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: cps:CPS_1433 transcriptional regulator, IclR family
YP_001342191.1	KEGG: fnu:FN1247 LOS biosynthesis enzyme LBGB
YP_001342192.1	PFAM: regulatory protein TetR; KEGG: vpa:VPA1299 putative transcriptional regulator
YP_001342193.1	PFAM: bifunctional deaminase-reductase domain protein; KEGG: vpa:VPA1300 hypothetical protein
YP_001342194.1	KEGG: mmr:Mmar10_0559 hypothetical protein
YP_001342195.1	PFAM: protein of unknown function DUF1568; KEGG: sde:Sde_3465 hypothetical protein
YP_001342196.1	KEGG: eca:ECA0398 hypothetical protein
YP_001342201.1	KEGG: bld:BLi02977 hypothetical protein
YP_001342202.1	PFAM: Integrase catalytic region; KEGG: pae:PA0978 hypothetical protein
YP_001342203.1	PFAM: transposase IS3/IS911 family protein; KEGG: pau:PA14_51620 possible transposase
YP_001342205.1	KEGG: chu:CHU_1410 hypothetical protein
YP_001342210.1	PFAM: Sel1 domain protein repeat-containing protein; KEGG: mgm:Mmc1_2003 Sel1 domain protein repeat-containing protein
YP_001342211.1	catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3
YP_001342212.1	TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: hch:HCH_06475 precorrin-2 C20-methyltransferase
YP_001342213.1	TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: hch:HCH_06474 precorrin-6Y C5,15-methyltransferase (decarboxylating)
YP_001342214.1	PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: hch:HCH_06473 precorrin isomerase
YP_001342215.1	PFAM: Precorrin-6x reductase CbiJ/CobK; KEGG: hch:HCH_06470 precorrin-6x reductase
YP_001342216.1	Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A
YP_001342217.1	PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: hch:HCH_06468 cobyrinic acid a,c-diamide synthase
YP_001342218.1	PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: hch:HCH_06466 magnesium chelatase ATPase subunit I
YP_001342219.1	KEGG: tdn:Tmden_0219 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_001342220.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: noc:Noc_2021 PAS sensor diguanylate cyclase/phophodiesterase
YP_001342221.1	PFAM: protein of unknown function DUF161; KEGG: csa:Csal_3276 protein of unknown function DUF161
YP_001342222.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: eca:ECA2724 LysR-family transciptional regulator
YP_001342223.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cps:CPS_1231 transcriptional regulator, LysR family
YP_001342224.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bca:BCE_0675 glyoxylase family protein
YP_001342225.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: hch:HCH_04994 peroxiredoxin
YP_001342226.1	TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: csa:Csal_2129 glutaredoxin-related protein
YP_001342227.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_001342228.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: psb:Psyr_3917 regulatory protein, LysR:LysR, substrate-binding
YP_001342229.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: maq:Maqu_2320 integral membrane sensor signal transduction histidine kinase
YP_001342230.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: hch:HCH_01757 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
YP_001342231.1	PFAM: protein of unknown function DUF1499; KEGG: sfr:Sfri_3619 protein of unknown function DUF1499
YP_001342232.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: csa:Csal_0851 pseudouridine synthase, Rsu
YP_001342233.1	TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: maq:Maqu_2527 SUA5/YciO/YrdC/YwlC family protein
YP_001342234.1	PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sde:Sde_1718 hypothetical protein
YP_001342235.1	Involved in cell division; probably involved in intracellular septation
YP_001342236.1	PFAM: YCII-related; KEGG: aeh:Mlg_0718 YCII-related
YP_001342237.1	TIGRFAM: conserved hypothetical selenoprotein; PFAM: Selenoprotein W-related; KEGG: vpa:VP0817 selenoprotein W-related protein
YP_001342238.1	PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: plu:plu0391 peptidyl-prolyl cis-trans isomerase A precursor (PPIase A) (rotamase A) (cyclophilin A)
YP_001342239.1	PFAM: FAD dependent oxidoreductase; protein of unknown function DUF752; KEGG: cvi:CV1942 hypothetical protein
YP_001342240.1	KEGG: sde:Sde_2002 hypothetical protein
YP_001342241.1	TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine acetyltransferase domain protein; KEGG: aha:AHA_0192 serine O-acetyltransferase
YP_001342242.1	PFAM: protein of unknown function UPF0270; KEGG: sat:SYN_01320 hypothetical cytosolic protein
YP_001342243.1	KEGG: hch:HCH_04729 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase
YP_001342244.1	TIGRFAM: cell division protein ZipA; PFAM: ZipA FtsZ-binding region; KEGG: maq:Maqu_1166 cell division protein ZipA
YP_001342245.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pae:PA1483 cytochrome c-type biogenesis protein
YP_001342246.1	PFAM: cytochrome C biogenesis protein; KEGG: hch:HCH_04362 cytochrome c biogenesis protein, CcmH family
YP_001342247.1	TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: vch:VC2051 thiol:disulfide interchange protein DsbE
YP_001342248.1	TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: psb:Psyr_3388 cytochrome c-type biogenesis protein CcmF
YP_001342249.1	PFAM: CcmE/CycJ protein; KEGG: pfo:Pfl_1581 CcmE/CycJ protein
YP_001342250.1	PFAM: Heme exporter protein D (CcmD); KEGG: pin:Ping_3021 heme exporter protein D (CcmD)
YP_001342251.1	TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: pen:PSEEN3780 cytochrome c-type biogenesis protein CcmC; heme ABC export system, permease protein
YP_001342252.1	PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: ppr:PBPRA0949 putative heme exporter protein B
YP_001342253.1	TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ecs:ECs3090 ATP binding protein of heme exporter A
YP_001342254.1	KEGG: psp:PSPPH_3315 hypothetical protein
YP_001342255.1	KEGG: pen:PSEEN3784 hypothetical protein
YP_001342256.1	KEGG: hch:HCH_05160 hypothetical protein
YP_001342257.1	PFAM: CheW domain protein; KEGG: sde:Sde_2155 flagellar FliF M-ring protein
YP_001342258.1	PFAM: CheW domain protein; KEGG: maq:Maqu_1967 CheW domain protein
YP_001342259.1	PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pfl:PFL_1674 ParA family protein
YP_001342260.1	PFAM: OmpA/MotB domain protein; KEGG: hch:HCH_05164 flagellar motor protein
YP_001342261.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: pst:PSPTO_1984 chemotaxis motA protein
YP_001342262.1	regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins
YP_001342263.1	PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: hch:HCH_05168 chemotaxis protein histidine kinase and related kinase
YP_001342264.1	PFAM: Chemotaxis phosphatase CheZ; KEGG: hch:HCH_05169 chemotaxis protein
YP_001342265.1	PFAM: response regulator receiver; KEGG: pfo:Pfl_1564 response regulator receiver domain protein (CheY)
YP_001342266.1	TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma-70; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: maq:Maqu_1975 RNA polymerase, sigma 28 subunit, FliA/WhiG family
YP_001342267.1	PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase; KEGG: hch:HCH_05173 flagellar GTP-binding protein
YP_001342268.1	TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: maq:Maqu_1978 flagellar biosynthesis protein FlhA
YP_001342269.1	TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: sde:Sde_2169 flagellar biosynthetic protein FlhB
YP_001342270.1	TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: pfo:Pfl_1551 flagellar biosynthesis protein FliR
YP_001342271.1	TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: pau:PA14_45760 flagellar biosynthetic protein FliQ
YP_001342272.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_001342273.1	PFAM: flagellar biosynthesis protein FliO; KEGG: fliO; flagellar biosynthesis; K02418 flagellar protein FliO/FliZ
YP_001342274.1	TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: hch:HCH_05180 flagellar motor switch protein
YP_001342275.1	with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation
YP_001342276.1	PFAM: flagellar basal body-associated protein FliL; KEGG: hch:HCH_05182 flagellar basal body-associated protein
YP_001342277.1	PFAM: flagellar hook-length control protein; KEGG: she:Shewmr4_1287 flagellar hook-length control protein
YP_001342278.1	PFAM: response regulator receiver; Stage II sporulation E family protein; KEGG: pau:PA14_20780 putative sensor histidine kinase/response regulator
YP_001342279.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: ppu:PP_4364 anti-sigma F factor antagonist, putative
YP_001342282.1	TIGRFAM: flagellar export protein FliJ; KEGG: dar:Daro_0769 flagellar FliJ and related
YP_001342283.1	KEGG: maq:Maqu_1994 flagellar protein export ATPase FliI; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase
YP_001342284.1	PFAM: flagellar assembly protein FliH; KEGG: maq:Maqu_1995 flagellar assembly protein FliH
YP_001342285.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_001342286.1	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod
YP_001342287.1	TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: maq:Maqu_1998 flagellar hook-basal body complex subunit FliE
YP_001342288.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: aha:AHA_2824 transcriptional activator
YP_001342289.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: pfl:PFL_1635 sensory box histidine kinase FleS
YP_001342290.1	PFAM: helix-turn-helix Fis-type; KEGG: xom:XOO_2447 transcriptional regulator
YP_001342291.1	TIGRFAM: dethiobiotin synthase; KEGG: hch:HCH_05366 dethiobiotin synthase
YP_001342292.1	PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN5118 biotin biosynthesis protein BioC
YP_001342293.1	PFAM: alpha/beta hydrolase fold; KEGG: pfl:PFL_5691 BioH protein
YP_001342294.1	TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; KEGG: ppu:PP_0363 8-amino-7-oxononanoate synthase
YP_001342295.1	KEGG: ppu:PP_0362 biotin synthetase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB
YP_001342296.1	KEGG: sde:Sde_3140 K+-dependent Na+/Ca+ exchanger related-protein
YP_001342297.1	TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: cph:Cpha266_0117 adenosylmethionine-8-amino-7-oxononanoate aminotransferase
YP_001342298.1	TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: psb:Psyr_3406 PAS
YP_001342299.1	TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: psb:Psyr_0585 DnaB helicase
YP_001342300.1	PFAM: ribosomal protein L9; KEGG: maq:Maqu_2383 ribosomal protein L9
YP_001342301.1	KEGG: maq:Maqu_2384 hypothetical protein
YP_001342302.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_001342303.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_001342304.1	PFAM: MltA-interacting MipA family protein; KEGG: vfi:VF1632 hypothetical outer membrane protein
YP_001342305.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: cvi:CV3339 hypothetical protein
YP_001342306.1	PFAM: protein of unknown function DUF6 transmembrane; UAA transporter; KEGG: ppd:Ppro_1999 protein of unknown function DUF6, transmembrane
YP_001342307.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: mkm:Mkms_0870 protein of unknown function DUF6, transmembrane
YP_001342308.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aha:AHA_0874 thiamine ABC transporter, ATP-binding protein
YP_001342309.1	TIGRFAM: thiamine ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ppr:PBPRA0412 putative thiamine ABC transporter,permease protein
YP_001342310.1	TIGRFAM: ABC transporter, periplasmic binding protein, thiB subfamily; thiamine ABC transporter, periplasmic binding protein; KEGG: ppr:PBPRA0413 putative ABC-type thiamine transport system,periplasmic component
YP_001342311.1	PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: vco:VC0395_A2613 3-deoxy-D-manno-octulosonic-acid transferase
YP_001342312.1	TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_02703 lipid A export ATP-binding/permease protein MsbA
YP_001342313.1	TIGRFAM: cytidyltransferase-related domain; rfaE bifunctional protein; PFAM: cytidylyltransferase; PfkB domain protein; KEGG: pae:PA4996 putative ADP-heptose synthase
YP_001342314.1	PFAM: N-acylglucosamine 2-epimerase; KEGG: bja:bll5968 Similar to Mannose-6-phosphate isomerase
YP_001342315.1	TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: tcx:Tcr_1517 ADP-L-glycero-D-manno-heptose-6-epimerase
YP_001342316.1	TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: csa:Csal_0009 lipopolysaccharide heptosyltransferase II
YP_001342317.1	PFAM: glycosyl transferase family 9
YP_001342318.1	PFAM: glycosyl transferase family 2; KEGG: fjo:Fjoh_2521 glycosyl transferase, family 2
YP_001342319.1	PFAM: glycosyl transferase group 1; KEGG: maq:Maqu_0792 transcriptional regulator, fis family
YP_001342320.1	PFAM: sulfatase; KEGG: vvy:VV0298 predicted hydrolase
YP_001342321.1	PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: vpa:VP0236 nucleotide sugar dehydrogenase
YP_001342323.1	PFAM: Rhodanese domain protein; KEGG: tbd:Tbd_2489 3-mercaptopyruvate sulfurtransferase
YP_001342324.1	TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: dar:Daro_0184 hemolysin A
YP_001342325.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: sdn:Sden_2374 MATE efflux family protein
YP_001342326.1	KEGG: hch:HCH_01256 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase
YP_001342327.1	TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: lin:lin2682 highly similar to uracil phosphoribosyltransferase
YP_001342328.1	PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3340 integrase, catalytic region
YP_001342329.1	KEGG: dde:Dde_2987 transposase
YP_001342330.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dps:DP1052 similar to putative threonine efflux protein
YP_001342331.1	PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YcdC domain protein; KEGG: reh:H16_B1594 transcriptional regulator, TetR/AcrR-family
YP_001342332.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: vfi:VFA0381 sensory transduction protein kinase
YP_001342333.1	KEGG: sit:TM1040_2583 putative glutathione S-transferase
YP_001342334.1	SMART: Lysozyme subfamily 2; KEGG: sde:Sde_0400 bax protein, putative
YP_001342335.1	PFAM: Beta-ketoacyl synthase; KEGG: csa:Csal_2934 beta-ketoacyl synthase
YP_001342336.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aha:AHA_1606 transcriptional regulator, LysR family
YP_001342337.1	PFAM: YceI family protein; KEGG: aha:AHA_1607 small protease
YP_001342340.1	PFAM: dTDP-4-dehydrorhamnose reductase; KEGG: pfl:PFL_5534 dTDP-4-dehydrorhamnose reductase
YP_001342341.1	PFAM: TatD-related deoxyribonuclease; KEGG: pat:Patl_3146 TatD-related deoxyribonuclease
YP_001342342.1	PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP
YP_001342343.1	TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: shw:Sputw3181_2302 6-phosphogluconate dehydrogenase, decarboxylating
YP_001342344.1	TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sde:Sde_1411 RNA methyltransferase, TrmH family, group 1
YP_001342345.1	PFAM: inositol monophosphatase; KEGG: pau:PA14_14680 extragenic suppressor protein SuhB
YP_001342346.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: gfo:orf1802 protein containing oxidoreductase domain
YP_001342347.1	PFAM: protein of unknown function DUF480; KEGG: vpa:VPA1223 hypothetical protein
YP_001342348.1	PFAM: Sterol desaturase; KEGG: pat:Patl_0389 sterol desaturase
YP_001342350.1	PFAM: aminotransferase class I and II; KEGG: aha:AHA_3110 putative aminotransferase B
YP_001342351.1	PFAM: regulatory protein TetR; KEGG: bch:Bcen2424_5098 transcriptional regulator, TetR family
YP_001342352.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: ppr:PBPRB1744 putative glycine betaine-binding ABC transporter
YP_001342353.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vpa:VPA1110 putative permease of ABC transporter
YP_001342354.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRB1742 putative ATP-binding component of ABC transporter
YP_001342355.1	PFAM: glutamine synthetase catalytic region; KEGG: bpm:BURPS1710b_A2022 glutamine synthetase family protein
YP_001342356.1	PFAM: FAD dependent oxidoreductase; KEGG: sit:TM1040_1839 FAD dependent oxidoreductase
YP_001342357.1	PFAM: glutamine amidotransferase class-I; KEGG: csa:Csal_1182 glutamine amidotransferase class-I
YP_001342358.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cps:CPS_4674 putrescine ABC transporter, permease protein
YP_001342359.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cps:CPS_4673 putrescine ABC transporter, permease protein
YP_001342360.1	TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: cps:CPS_4672 putrescine ABC transporter, ATP-binding protein
YP_001342361.1	PFAM: extracellular solute-binding protein family 1; KEGG: cps:CPS_4671 putrescine ABC transporter, periplasmic putrescine-binding protein
YP_001342362.1	PFAM: glutamine synthetase catalytic region; KEGG: csa:Csal_1181 glutamate--ammonia ligase
YP_001342363.1	PFAM: regulatory protein LuxR; KEGG: csa:Csal_1180 transcriptional regulator, LuxR family
YP_001342364.1	PFAM: FAD dependent oxidoreductase; KEGG: cps:CPS_4676 oxidoreductase, FAD-dependent
YP_001342365.1	PFAM: aldehyde dehydrogenase; KEGG: psb:Psyr_0227 aldehyde dehydrogenase (NAD+)
YP_001342366.1	PFAM: major facilitator superfamily MFS_1; KEGG: csa:Csal_0203 major facilitator superfamily MFS_1
YP_001342367.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: psp:PSPPH_4063 transporter, LysE family
YP_001342368.1	PFAM: regulatory protein LysR; KEGG: cps:CPS_4135 chromosome initiation inhibitor
YP_001342369.1	TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: maq:Maqu_1672 UTP-glucose-1-phosphate uridylyltransferase GalU
YP_001342370.1	PFAM: inner-membrane translocator; KEGG: rle:RL2379 putative transmembrane component of ABC transporter
YP_001342371.1	PFAM: inner-membrane translocator; KEGG: bja:blr3202 sugar ABC transporter permease protein
YP_001342372.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMb21588 putative sugar uptake ABC transporter ATP-binding protein
YP_001342373.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: shn:Shewana3_2073 periplasmic binding protein/LacI transcriptional regulator
YP_001342374.1	PFAM: Auxin Efflux Carrier; KEGG: maq:Maqu_1893 auxin efflux carrier
YP_001342375.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfr:Sfri_0207 transcriptional regulator, LysR family protein
YP_001342376.1	PFAM: Pirin domain protein; Cupin 2 conserved barrel domain protein; KEGG: vpa:VPA0042 hypothetical protein
YP_001342377.1	PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: tfu:Tfu_1860 iron-chelator utilization protein
YP_001342378.1	TIGRFAM: CRISPR-associated protein Cas2; KEGG: ppr:PBPRC0033 hypothetical protein
YP_001342379.1	TIGRFAM: CRISPR-associated protein Cas1; KEGG: ppr:PBPRC0034 hypothetical protein
YP_001342380.1	KEGG: tdn:Tmden_0480 hypothetical protein
YP_001342381.1	TIGRFAM: CRISPR-associated protein, Cse3 family; PFAM: CRISPR-associated protein CT1974; KEGG: plu:plu0750 hypothetical protein
YP_001342382.1	TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: plu:plu0749 hypothetical protein
YP_001342383.1	TIGRFAM: CRISPR-associated protein, Cse4 family; KEGG: plu:plu0748 hypothetical protein
YP_001342384.1	TIGRFAM: CRISPR-associated protein, Cse2 family; KEGG: plu:plu0747 hypothetical protein
YP_001342385.1	TIGRFAM: CRISPR-associated protein, Cse1 family; KEGG: plu:plu0746 hypothetical protein
YP_001342386.1	TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: plu:plu0745 hypothetical protein
YP_001342387.1	KEGG: vch:VC1772 hypothetical protein
YP_001342388.1	KEGG: ppr:PBPRA2469 hypothetical protein
YP_001342389.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_001342390.1	TIGRFAM: yecA family protein; KEGG: sbo:SBO_1098 hypothetical protein
YP_001342391.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_001342392.1	PFAM: protein of unknown function UPF0227; KEGG: vch:VC2432 hypothetical protein
YP_001342393.1	PFAM: protein of unknown function DUF1249; KEGG: aha:AHA_3764 phosphohydrolase
YP_001342394.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: pfl:PFL_0937 acyltransferase family protein
YP_001342395.1	PFAM: NUDIX hydrolase; KEGG: vch:VC2435 putative ADP-ribose pyrophosphatase
YP_001342396.1	TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; KEGG: plu:plu0292 DNA-3-methyladenine glycosylase I (3-methyladenine-DNA glycosylase I, constitutive) (TAG I) (DNA-3-methyladenine glycosidase I)
YP_001342397.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: shw:Sputw3181_1378 polysaccharide biosynthesis protein CapD
YP_001342398.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: par:Psyc_0654 putative DegT/DnrJ/EryC1/StrS aminotransferase
YP_001342399.1	PFAM: acylneuraminate cytidylyltransferase; KEGG: aeh:Mlg_2324 acylneuraminate cytidylyltransferase
YP_001342400.1	KEGG: cth:Cthe_2222 glycosyltransferase 28-like protein
YP_001342401.1	PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: shw:Sputw3181_1382 N-acylneuraminate-9-phosphate synthase
YP_001342402.1	KEGG: aha:AHA_1703 hypothetical protein
YP_001342404.1	PFAM: flagellar protein FliS; KEGG: pat:Patl_3082 flagellar protein FliS
YP_001342405.1	PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: aha:AHA_1701 flagellar hook-associated protein 2
YP_001342406.1	PFAM: flagellar protein FlaG protein; KEGG: shn:Shewana3_1334 flagellar protein FlaG protein
YP_001342407.1	PFAM: flagellin domain protein; KEGG: aha:AHA_1699 flagellin
YP_001342408.1	PFAM: flagellin domain protein; KEGG: aha:AHA_1699 flagellin
YP_001342409.1	PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: aha:AHA_2853 HD domain protein
YP_001342410.1	TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: aha:AHA_2832 flagellar hook-associated protein 3
YP_001342411.1	TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; KEGG: pat:Patl_3091 flagellar hook-associated protein FlgK
YP_001342412.1	TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; KEGG: maq:Maqu_1110 flagellar rod assembly protein/muramidase FlgJ
YP_001342413.1	PFAM: flagellar P-ring protein; KEGG: hch:HCH_04475 flagellar basal-body P-ring protein
YP_001342414.1	PFAM: flagellar L-ring protein; KEGG: ilo:IL1141 flagellar basal body L-ring protein
YP_001342415.1	TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: pau:PA14_50430 flagellar basal-body rod protein FlgG
YP_001342416.1	TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: ppu:PP_4386 flagellar basal-body rod protein FlgF
YP_001342417.1	PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: maq:Maqu_1105 protein of unknown function DUF1078 domain protein
YP_001342418.1	PFAM: flagellar hook capping protein; KEGG: psp:PSPPH_3406 flagellar basal-body rod modification protein FlgD
YP_001342419.1	TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: maq:Maqu_1103 flagellar basal-body rod protein FlgC
YP_001342420.1	TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: pfl:PFL_4480 flagellar basal-body rod protein FlgB
YP_001342421.1	TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pin:Ping_3190 thioredoxin
YP_001342422.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pau:PA14_69720 putative hydrolase
YP_001342423.1	PFAM: protein of unknown function DUF484; KEGG: hch:HCH_00299 hypothetical protein
YP_001342424.1	PFAM: diaminopimelate epimerase; KEGG: hch:HCH_00298 diaminopimelate epimerase
YP_001342425.1	TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: maq:Maqu_0494 diaminopimelate decarboxylase
YP_001342427.1	TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: sde:Sde_3670 response regulator receiver domain protein (CheY-like)
YP_001342428.1	TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; KEGG: saz:Sama_3254 hydroxymethylbilane synthase
YP_001342429.1	PFAM: Uroporphyrinogen III synthase HEM4; KEGG: sde:Sde_3666 Na+/H+ antiporter NhaA
YP_001342430.1	PFAM: protein of unknown function DUF513 hemX; KEGG: maq:Maqu_0485 protein of unknown function DUF513, HemX
YP_001342431.1	PFAM: HemY domain protein; KEGG: maq:Maqu_0484 HemY domain protein
YP_001342432.1	TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: shw:Sputw3181_0835 methyl-accepting chemotaxis sensory transducer
YP_001342433.1	KEGG: ppr:PBPRB0899 hypothetical protein
YP_001342434.1	PFAM: protein of unknown function DUF328; KEGG: vpa:VP0504 hypothetical protein
YP_001342435.1	TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: vfi:VF0769 peptide release factor-glutamine N5-methyltransferase
YP_001342436.1	TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: sde:Sde_3251 peptide chain release factor 1
YP_001342437.1	PFAM: glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; KEGG: pau:PA14_61710 glutamyl-tRNA reductase
YP_001342438.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: maq:Maqu_2362 tetratricopeptide TPR_2 repeat protein
YP_001342439.1	PFAM: outer membrane lipoprotein LolB; KEGG: csa:Csal_1526 outer membrane lipoprotein LolB
YP_001342440.1	TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; KEGG: hch:HCH_01727 4-diphosphocytidyl-2C-methyl-D-erythritol kinase
YP_001342441.1	TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; KEGG: hch:HCH_01726 phosphoribosylpyrophosphate synthetase
YP_001342442.1	TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: hch:HCH_01725 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
YP_001342443.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_001342444.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_001342445.1	KEGG: sde:Sde_2088 hypothetical protein
YP_001342446.1	PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: abo:ABO_0479 ATP-dependent Clp protease, ATP-binding subunit ClpB
YP_001342447.1	PFAM: protein of unknown function DUF152; KEGG: sdy:SDY_2836 hypothetical protein
YP_001342448.1	TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pfo:Pfl_4836 pseudouridine synthase, RluD
YP_001342449.1	KEGG: psb:Psyr_0725 competence lipoprotein ComL, putative
YP_001342450.1	PFAM: Glutathione S-transferase domain; KEGG: pin:Ping_1043 glutathione S-transferase, N-terminal domain
YP_001342451.1	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: tcx:Tcr_1862 cold-shock DNA-binding domain protein
YP_001342452.1	PFAM: Rh family protein/ammonium transporter; KEGG: hch:HCH_02676 ammonia permease
YP_001342453.1	KEGG: cps:CPS_2423 hypothetical protein
YP_001342454.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bxe:Bxe_A2628 putative fumarylpyruvate hydrolase (MhbH)
YP_001342455.1	KEGG: maq:Maqu_1180 anti-ECFsigma factor, ChrR
YP_001342456.1	PFAM: porin Gram-negative type; KEGG: csa:Csal_2569 porin, gram-negative type
YP_001342457.1	KEGG: maq:Maqu_0968 hypothetical protein
YP_001342458.1	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: aha:AHA_2864 hypothetical protein
YP_001342459.1	TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit; KEGG: pin:Ping_3375 oxaloacetate decarboxylase, beta subunit
YP_001342460.1	catalyzes the formation of pyruvate from oxaloacetate
YP_001342461.1	TIGRFAM: sodium pump decarboxylase, gamma subunit; PFAM: sodium pump decarboxylase gamma subunit; KEGG: maq:Maqu_0970 sodium pump decarboxylases, gamma subunit
YP_001342462.1	PFAM: dihydrouridine synthase DuS; KEGG: pat:Patl_2915 dihydrouridine synthase, DuS
YP_001342463.1	PFAM: carbon storage regulator; KEGG: ilo:IL1737 carbon storage regulatory protein
YP_001342464.1	TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; KEGG: pen:PSEEN3874 aspartate kinase, monofunctional class
YP_001342465.1	TIGRFAM: alanyl-tRNA synthetase; PFAM: alanyl-tRNA synthetase class IIc; phosphoesterase DHHA1; Threonyl/alanyl tRNA synthetase SAD; KEGG: pau:PA14_52600 alanyl-tRNA synthetase
YP_001342466.1	TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; KEGG: pae:PA5302 catabolic alanine racemase
YP_001342467.1	PFAM: FAD dependent oxidoreductase; KEGG: pin:Ping_2082 D-amino-acid dehydrogenase
YP_001342468.1	PFAM: regulatory protein RecX; KEGG: vch:VC0544 regulatory protein RecX
YP_001342469.1	TIGRFAM: ribosomal subunit interface protein; KEGG: mxa:MXAN_4815 hypothetical protein
YP_001342470.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_3998 transcriptional regulator, LysR family
YP_001342471.1	KEGG: noc:Noc_1323 hypothetical protein
YP_001342472.1	SMART: helix-turn-helix- domain containing protein AraC type; KEGG: chu:CHU_1925 transcriptional regulator
YP_001342473.1	PFAM: periplasmic binding protein; KEGG: pde:Pden_3522 periplasmic binding protein
YP_001342474.1	PFAM: transport system permease protein; KEGG: pde:Pden_3523 transport system permease protein
YP_001342475.1	PFAM: transport system permease protein; ABC-3 protein; KEGG: pde:Pden_3524 transport system permease protein
YP_001342476.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pde:Pden_3525 ABC transporter related
YP_001342477.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ppu:PP_4755 outer membrane ferrichrome-iron receptor
YP_001342478.1	PFAM: phosphoesterase PA-phosphatase related; KEGG: vfi:VF1206 phosphoesterase, PAP2 family
YP_001342479.1	PFAM: sulfatase; protein of unknown function DUF1705; KEGG: pin:Ping_1454 sulfatase
YP_001342480.1	PFAM: diacylglycerol kinase; KEGG: sfr:Sfri_1483 diacylglycerol kinase
YP_001342481.1	PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: vvu:VV1_1095 serine/threonine protein kinase
YP_001342482.1	KEGG: vfi:VF2497 hypothetical protein
YP_001342483.1	KEGG: vpa:VP0055 putative RNA polymerase ECF-type sigma factor
YP_001342484.1	PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: shw:Sputw3181_2399 RNA-directed DNA polymerase (reverse transcriptase)
YP_001342485.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: vfi:VF1323 lipoprotein
YP_001342486.1	PFAM: cytochrome c class I; KEGG: abo:ABO_2540 cytochrome c5, putative
YP_001342487.1	TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: pau:PA14_69910 ATP-dependent DNA helicase Rep
YP_001342488.1	PFAM: Bile acid:sodium symporter; KEGG: son:SO4519 sodium-dependent transporter
YP_001342489.1	TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: aha:AHA_4206 putative Mg chelatase homolog
YP_001342490.1	KEGG: pst:PSPTO_1125 hypothetical protein
YP_001342491.1	PFAM: protein of unknown function DUF526; KEGG: cvi:CV4001 hypothetical protein
YP_001342492.1	PFAM: nitrogen regulatory protein P-II; KEGG: hch:HCH_06398 nitrogen regulatory protein PII
YP_001342493.1	TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: pat:Patl_0492 Rh-like protein/ammonium transporter
YP_001342494.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: maq:Maqu_1442 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_001342495.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_001342496.1	PFAM: protein of unknown function DUF1289; KEGG: aha:AHA_2337 MutT/NUDIX family protein
YP_001342497.1	KEGG: cps:CPS_0147 hydrolase, alpha/beta fold family
YP_001342498.1	TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: cps:CPS_1432 methylmalonate-semialdehyde dehydrogenase
YP_001342499.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: csa:Csal_1124 transcriptional regulator, LysR family
YP_001342500.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pha:PSHAb0439 putative multidrug resistance protein (substrate binding lipoprotein)
YP_001342501.1	PFAM: acriflavin resistance protein; KEGG: pha:PSHAb0438 putative metabolite exporter, AcrB/D/F family
YP_001342502.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aha:AHA_0361 HTH-type transcriptional regulator YidZ
YP_001342503.1	PFAM: protein of unknown function DUF1653; KEGG: pfo:Pfl_3877 TonB box-like
YP_001342504.1	PFAM: arginine N-succinyltransferase beta subunit; KEGG: pau:PA14_52700 arginine/ornithine succinyltransferase AI subunit
YP_001342505.1	PFAM: arginine N-succinyltransferase beta subunit; KEGG: ecs:ECs2453 putative arginine N-succinyltransferase
YP_001342506.1	PFAM: aldehyde dehydrogenase; KEGG: pha:PSHAa0196 succinylglutamic semialdehyde dehydrogenase
YP_001342507.1	catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation
YP_001342508.1	KEGG: vpa:VP0563 hypothetical protein
YP_001342509.1	KEGG: tcx:Tcr_1943 hypothetical protein
YP_001342510.1	catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively
YP_001342511.1	PFAM: cobalbumin biosynthesis protein; KEGG: pen:PSEEN1384 cobinamide kinase; cobinamide phosphate guanylyltransferase CobU
YP_001342512.1	PFAM: aminotransferase class I and II; KEGG: cps:CPS_1142 CobC protein
YP_001342513.1	TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: ppu:PP_1675 cobalamin biosynthesis protein CobD
YP_001342514.1	TIGRFAM: cobyric acid synthase CobQ; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: pfl:PFL_4426 cobyric acid synthase CobQ
YP_001342515.1	TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase; KEGG: abo:ABO_0116 esterase, putative
YP_001342516.1	TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sdn:Sden_3767 alcohol dehydrogenase, zinc-binding
YP_001342517.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: csa:Csal_0984 transcriptional regulator, LysR family
YP_001342518.1	KEGG: sde:Sde_2899 hypothetical protein
YP_001342519.1	PFAM: GCN5-related N-acetyltransferase; KEGG: gfo:orf2000 GNAT family acetyltransferase
YP_001342520.1	PFAM: GCN5-related N-acetyltransferase; KEGG: shw:Sputw3181_0280 GCN5-related N-acetyltransferase
YP_001342521.1	TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: aha:AHA_3590 aspartate racemase
YP_001342522.1	PFAM: fumarate lyase; KEGG: hch:HCH_00016 fumarase
YP_001342523.1	KEGG: pst:PSPTO_4462 hypothetical protein
YP_001342524.1	PFAM: peptidylprolyl isomerase FKBP-type; KEGG: sdn:Sden_2140 peptidylprolyl isomerase, FKBP-type
YP_001342526.1	PFAM: MscS Mechanosensitive ion channel; KEGG: pat:Patl_0259 MscS mechanosensitive ion channel
YP_001342527.1	PFAM: YebG family protein; KEGG: vpa:VP2379 DNA damage-inducible gene in SOS regulon, dependent on cyclic AMP and H-NS
YP_001342528.1	KEGG: pat:Patl_2108 hypothetical protein
YP_001342529.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_3812 transcriptional regulator, LysR family
YP_001342530.1	PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRA1477 putative amino acid ABC transporter
YP_001342531.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ppr:PBPRA1476 hypothetical amino acid ABC transporter, permease protein
YP_001342532.1	PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: ppr:PBPRA1475 hypothetical binding protein component ofABC transporter
YP_001342533.1	catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine
YP_001342534.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psb:Psyr_2295 ABC transporter, transmembrane region:ABC transporter
YP_001342535.1	PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: vvy:VV3210 putative multicopper oxidase
YP_001342536.1	KEGG: sgl:SG0631 hypothetical protein
YP_001342537.1	KEGG: dps:DP1779 hypothetical protein
YP_001342538.1	KEGG: chu:CHU_2355 hypothetical protein
YP_001342539.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pau:PA14_35370 transcriptional regulator PtxS
YP_001342540.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: oih:OB2702 C4-dicarboxylate transport system C4-dicarboxylate-binding protein
YP_001342541.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: oih:OB2701 hypothetical protein
YP_001342542.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: oih:OB2700 C4-dicarboxylate transport system permease large protein
YP_001342543.1	PFAM: PfkB domain protein; KEGG: bxe:Bxe_A1980 putative sugar (2-ketogluconate) kinase, PfkB family
YP_001342544.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pfo:Pfl_2904 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_001342545.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: shn:Shewana3_3088 methyl-accepting chemotaxis sensory transducer
YP_001342546.1	TIGRFAM: signal peptidase I; PFAM: peptidase S24 S26A and S26B; KEGG: pae:PA1303 probable signal peptidase
YP_001342547.1	KEGG: pat:Patl_3952 hypothetical protein
YP_001342548.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pin:Ping_1689 transcriptional regulator, substrate-binding of LysR family protein
YP_001342549.1	PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: ret:RHE_CH00425 L-lactate dehydrogenase (cytochrome) protein
YP_001342550.1	PFAM: glycoside hydrolase family 8; KEGG: bcz:pE33L466_0086 chitosanase
YP_001342551.1	PFAM: NAD(P)H dehydrogenase (quinone); KEGG: cps:CPS_2972 FMN-dependent NADH-azoreductase
YP_001342552.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cps:CPS_2971 substrate-binding transcriptional regulator, LysR family
YP_001342553.1	PFAM: nucleoside recognition domain protein; KEGG: hch:HCH_04846 hypothetical protein
YP_001342554.1	PFAM: regulatory protein AsnC/Lrp family; KEGG: hch:HCH_04847 transcriptional regulator
YP_001342555.1	KEGG: sde:Sde_0515 ATPase-like
YP_001342556.1	PFAM: FAD dependent oxidoreductase; tryptophan halogenase; KEGG: hypothetical protein
YP_001342557.1	KEGG: cvi:CV3268 hypothetical protein
YP_001342558.1	KEGG: aha:AHA_3215 hypothetical protein
YP_001342559.1	PFAM: L-asparaginase II; KEGG: gox:GOX0809 L-asparaginase II
YP_001342560.1	KEGG: hne:HNE_0497 antibiotic biosynthesis monooxygenase domain protein
YP_001342562.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: shw:Sputw3181_3961 glyoxalase/bleomycin resistance protein/dioxygenase
YP_001342563.1	PFAM: protein kinase; Stage II sporulation E family protein; Protein phosphatase 2C-like; SMART: tyrosine protein kinase; protein phosphatase 2C domain protein; serine/threonine protein kinase; KEGG: pin:Ping_0704 serine/threonine protein kinase
YP_001342564.1	PFAM: formate/nitrite transporter; KEGG: pin:Ping_0703 formate/nitrite transporter
YP_001342565.1	catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide
YP_001342566.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: maq:Maqu_2346 methyl-accepting chemotaxis sensory transducer
YP_001342567.1	KEGG: cfa:481882 similar to filamin A interacting protein 1
YP_001342568.1	KEGG: maq:Maqu_2082 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase
YP_001342569.1	PFAM: CinA domain protein; KEGG: xcv:XCV1770 putative competence-damaged protein
YP_001342570.1	TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS III domain protein; MutS II domain protein; MutS IV domain protein; KEGG: maq:Maqu_2087 DNA mismatch repair protein MutS
YP_001342571.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: csa:Csal_0620 4Fe-4S ferredoxin, iron-sulfur binding
YP_001342572.1	PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; KEGG: hch:HCH_04444 predicted signal transduction protein containing EAL and modified HD-GYP domains
YP_001342573.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_001342574.1	PFAM: protein of unknown function DUF519; KEGG: plu:plu0374 hypothetical protein
YP_001342575.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: chy:CHY_1906 sensory box/GGDEF domain/EAL domain protein
YP_001342576.1	PFAM: protein of unknown function UPF0047; KEGG: vvy:VV2976 hypothetical protein
YP_001342577.1	PFAM: dihydrofolate reductase region; KEGG: abo:ABO_2343 dihydrofolate reductase
YP_001342578.1	ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived
YP_001342579.1	PFAM: GCN5-related N-acetyltransferase; KEGG: vvy:VV1982 acetyltransferase
YP_001342580.1	TIGRFAM: Addiction module antidote protein HI1420; KEGG: dps:DP2056 hypothetical protein
YP_001342581.1	TIGRFAM: Addiction module killer protein HI1419; PFAM: protein of unknown function DUF891; KEGG: dps:DP2055 hypothetical protein
YP_001342582.1	PFAM: prolipoprotein diacylglyceryl transferase; KEGG: hch:HCH_05858 prolipoprotein diacylglyceryl transferase
YP_001342583.1	TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; GAF domain protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: maq:Maqu_0815 PTSINtr with GAF domain, PtsP
YP_001342584.1	hydrolyzes diadenosine polyphosphate
YP_001342585.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tcx:Tcr_0999 HAD-superfamily subfamily IB, PSPase-like
YP_001342586.1	PFAM: protein of unknown function Met10; conserved hypothetical protein 95; KEGG: psb:Psyr_4764 hypothetical protein
YP_001342587.1	PFAM: Metal-dependent hydrolase HDOD; KEGG: hch:HCH_05989 predicted signal transduction protein
YP_001342588.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: tbd:Tbd_0988 transport system ATPase
YP_001342589.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pat:Patl_1597 binding-protein-dependent transport systems inner membrane component
YP_001342590.1	PFAM: extracellular solute-binding protein family 1; KEGG: ilo:IL1059 ABC-type Fe3+ transport system, periplasmic component
YP_001342591.1	PFAM: Metal-dependent hydrolase HDOD; KEGG: sfr:Sfri_0283 putative signal transduction protein
YP_001342592.1	TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: psp:PSPPH_0308 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
YP_001342593.1	PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: pau:PA14_69000 aminopeptidase P
YP_001342594.1	PFAM: protein of unknown function UPF0149; KEGG: maq:Maqu_3428 protein of unknown function UPF0149
YP_001342595.1	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate
YP_001342596.1	TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: pae:PA3725 single-stranded-DNA-specific exonuclease RecJ
YP_001342597.1	TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: saz:Sama_1663 glucose/galactose transporter
YP_001342598.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pat:Patl_1702 diguanylate cyclase
YP_001342599.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_001342600.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_001342601.1	PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: pau:PA14_16070 homoserine dehydrogenase
YP_001342602.1	KEGG: hch:HCH_01777 protein-disulfide isomerase
YP_001342603.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_001342604.1	TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; KEGG: aha:AHA_0668 tRNA (guanine-N1)-methyltransferase
YP_001342605.1	TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: maq:Maqu_2279 16S rRNA processing protein RimM
YP_001342606.1	PFAM: ribosomal protein S16; KEGG: ilo:IL1726 ribosomal protein S16
YP_001342607.1	TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; KEGG: cps:CPS_4073 signal recognition particle protein
YP_001342608.1	PFAM: cytochrome c assembly protein; KEGG: pfo:Pfl_1017 cytochrome c assembly protein
YP_001342609.1	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: maq:Maqu_2313 protein of unknown function DUF21
YP_001342610.1	PFAM: NUDIX hydrolase; KEGG: bxe:Bxe_A2504 putative ADP-ribose pyrophosphatase, NUDIX hydrolase, NudF
YP_001342611.1	KEGG: hch:HCH_02194 hypothetical protein
YP_001342612.1	PFAM: protein of unknown function DUF72; KEGG: vch:VC1165 hypothetical protein
YP_001342613.1	TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: hch:HCH_00585 transcription elongation factor GreB
YP_001342614.1	PFAM: MscS Mechanosensitive ion channel; KEGG: pha:PSHAa0396 mechanosensitive channel protein
YP_001342616.1	KEGG: maq:Maqu_0642 hypothetical protein
YP_001342617.1	PFAM: inositol monophosphatase; KEGG: csa:Csal_1824 inositol-1(or 4)-monophosphatase
YP_001342618.1	PFAM: phospholipase/Carboxylesterase; KEGG: par:Psyc_1454 probable phospholipase/carboxylesterase family
YP_001342619.1	KEGG: mca:MCA1408 hypothetical protein
YP_001342620.1	PFAM: UMUC domain protein DNA-repair protein; KEGG: maq:Maqu_2332 DNA-directed DNA polymerase
YP_001342621.1	PFAM: protein of unknown function DUF400; KEGG: maq:Maqu_3159 protein of unknown function DUF400
YP_001342622.1	KEGG: hch:HCH_01368 hypothetical protein
YP_001342625.1	PFAM: polysaccharide deacetylase; KEGG: ilo:IL0251 polysaccharide deacetylase family protein
YP_001342626.1	catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine
YP_001342627.1	converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism
YP_001342628.1	PFAM: NUDIX hydrolase; NADH pyrophosphatase-like ; Zinc ribbon NADH pyrophosphatase; KEGG: eba:ebA2022 NTP pyrophosphohydrolases containing a Zn-finger,probably nucleic-acid-binding
YP_001342629.1	catalyzes the formation of glutamate from glutamine
YP_001342630.1	PFAM: conserved hypothetical protein 730; KEGG: psb:Psyr_3498 conserved hypothetical protein 730
YP_001342631.1	PFAM: AFG1-family ATPase; KEGG: pat:Patl_2704 AFG1-like ATPase
YP_001342632.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: maq:Maqu_1367 transcriptional regulator, LysR family
YP_001342633.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_001342634.1	KEGG: tcx:Tcr_0854 hypothetical protein
YP_001342635.1	catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate
YP_001342636.1	catalyzes the formation of acetyl-CoA from acetalaldehyde
YP_001342637.1	catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate
YP_001342638.1	PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sil:SPOA0333 TRAP dicarboxylate transporter, DctM subunit
YP_001342639.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pin:Ping_2934 tripartite ATP-independent periplasmic transporter, DctQ component
YP_001342640.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: hch:HCH_03539 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component
YP_001342641.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pna:Pnap_2667 transcriptional regulator, LysR family
YP_001342642.1	PFAM: major facilitator superfamily MFS_1; KEGG: sme:SMc02603 putative transport transmembrane protein
YP_001342643.1	PFAM: peptidase M16 domain protein; KEGG: eca:ECA0879 putative zinc protease
YP_001342644.1	PFAM: TonB-dependent receptor plug; KEGG: ecv:APECO1_623 hypothetical protein
YP_001342645.1	PFAM: FecR protein; KEGG: azo:azo2512 putative transmembrane sensor
YP_001342646.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: eca:ECA0813 RNA polymerase sigma factor
YP_001342647.1	PFAM: Glutathione S-transferase domain; KEGG: eca:ECA2716 putative glutathione S transferase
YP_001342648.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rsp:RSP_4278 transcriptional regulator, AraC family
YP_001342649.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: reh:H16_B2095 outer membrane receptor, TonB dependent
YP_001342650.1	KEGG: rsp:RSP_4279 hypothetical protein
YP_001342651.1	KEGG: rsp:RSP_7398 hypothetical protein
YP_001342652.1	PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: psb:Psyr_2261 peptidase M20:peptidase M20
YP_001342653.1	PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: vei:Veis_4729 peptidase M20
YP_001342654.1	PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: pst:PSPTO_2572 peptide ABC transporter, ATP-binding protein
YP_001342655.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: vei:Veis_4731 oligopeptide/dipeptide ABC transporter, ATPase subunit
YP_001342656.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_4732 binding-protein-dependent transport systems inner membrane component
YP_001342657.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_4733 binding-protein-dependent transport systems inner membrane component
YP_001342658.1	PFAM: extracellular solute-binding protein family 5; KEGG: psb:Psyr_2267 extracellular solute-binding protein, family 5
YP_001342659.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B2306 transcriptional regulator, LysR-family
YP_001342660.1	catalyzes the formation of pyruvate from serine
YP_001342661.1	PFAM: Amidase; KEGG: bja:bll4303 putative amidase
YP_001342662.1	KEGG: csa:Csal_0652 hypothetical protein
YP_001342663.1	PFAM: AMP-dependent synthetase and ligase; KEGG: eba:ebA6242 putative long-chain-fatty-acid-CoA ligase
YP_001342664.1	KEGG: hch:HCH_06615 hypothetical protein
YP_001342665.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: aha:AHA_3220 oxidoreductase, short-chain dehydrogenase/reductase family
YP_001342666.1	PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: ilo:IL0094 TPR repeats containing protein
YP_001342667.1	PFAM: alanine dehydrogenase/PNT domain protein; KEGG: ppr:PBPRB1416 hypothetical protein
YP_001342668.1	catalyzes the formation of malonyl-CoA from malonate and CoA
YP_001342669.1	PFAM: Malonyl-CoA decarboxylase; KEGG: rde:RD1_1475 malonyl-CoA decarboxylase
YP_001342670.1	KEGG: rle:RL3596 hypothetical protein
YP_001342671.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tdn:Tmden_0836 diguanylate cyclase (GGDEF domain)
YP_001342672.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cvi:CV4135 hypothetical protein
YP_001342673.1	PFAM: 5'-Nucleotidase domain protein; KEGG: pat:Patl_3565 5'-nucleotidase-like
YP_001342674.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: pat:Patl_3566 diguanylate cyclase
YP_001342675.1	PFAM: major facilitator superfamily MFS_1; KEGG: pcr:Pcryo_0868 major facilitator superfamily MFS_1
YP_001342676.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ppr:PBPRB0653 putative methyl-accepting chemotaxis protein
YP_001342677.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: sat:SYN_02722 sensory box/GGDEF family protein
YP_001342678.1	PFAM: extracellular solute-binding protein family 1; KEGG: ilo:IL1059 ABC-type Fe3+ transport system, periplasmic component
YP_001342679.1	participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate
YP_001342680.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_001342681.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pat:Patl_2046 ABC transporter related
YP_001342682.1	PFAM: KAP P-loop domain protein; KEGG: hch:HCH_00406 hypothetical protein
YP_001342683.1	TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: ppr:PBPRB1201 putative relE protein
YP_001342684.1	TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: vco:VC0395_0822 hypothetical protein
YP_001342685.1	KEGG: pcr:Pcryo_1617 hypothetical protein
YP_001342686.1	KEGG: pcr:Pcryo_1616 abortive infection protein, internal deletion
YP_001342687.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin)
YP_001342688.1	PFAM: protein of unknown function DUF112 transmembrane; KEGG: csa:Csal_1455 protein of unknown function DUF112, transmembrane
YP_001342689.1	KEGG: csa:Csal_1454 putative tricarboxylic transport membrane protein
YP_001342690.1	PFAM: Uncharacterized protein UPF0065; KEGG: csa:Csal_1453 uncharacterized protein UPF0065
YP_001342691.1	TIGRFAM: CitB domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pol:Bpro_0640 citrate utilization protein B
YP_001342692.1	catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica
YP_001342693.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_B2501 transcriptional regulator, LysR family
YP_001342694.1	Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity
YP_001342695.1	KEGG: sde:Sde_0381 hypothetical protein
YP_001342696.1	KEGG: cvi:CV2806 probable amino acid ABC transporter
YP_001342697.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: pca:Pcar_2297 sensor histidine kinase/FOG: GGDEF domain protein
YP_001342698.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: tcx:Tcr_1297 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
YP_001342699.1	PFAM: GTPase EngC; KEGG: vfi:VFA0018 ribosome-associated GTPase
YP_001342700.1	KEGG: sde:Sde_0641 hypothetical protein
YP_001342701.1	YghU; B2989; one of eight putative glutathione transferase proteins from E. coli
YP_001342702.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pau:PA14_20140 ferredoxin--NADP+ reductase
YP_001342703.1	TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: eba:ebA872 putative peptide methionine sulfoxide reductase MsrA
YP_001342704.1	PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: sfr:Sfri_0734 OmpA domain protein transmembrane region-containing protein
YP_001342705.1	PFAM: 4'-phosphopantetheinyl transferase; KEGG: osa:4345046 Os08g0243100
YP_001342706.1	KEGG: vvu:VV1_2469 excinuclease ATPase subunit
YP_001342707.1	KEGG: pfo:Pfl_0441 hypothetical protein
YP_001342708.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: psp:PSPPH_0429 acyltransferase family protein
YP_001342709.1	KEGG: csa:Csal_2749 acyl carrier protein, putative
YP_001342710.1	PFAM: phosphopantetheine-binding; KEGG: vvy:VV1079 acyl carrier protein
YP_001342711.1	KEGG: pha:PSHAb0395 hypothetical protein
YP_001342712.1	KEGG: rme:Rmet_4381 AMP-dependent synthetase and ligase
YP_001342713.1	KEGG: aha:AHA_3389 4-hydroxybenzoyl-CoA thioesterase domain protein
YP_001342714.1	KEGG: csa:Csal_2754 hypothetical protein
YP_001342715.1	KEGG: csa:Csal_2755 hypothetical protein
YP_001342716.1	PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: saz:Sama_3389 FAD-binding protein
YP_001342717.1	KEGG: rme:Rmet_4388 hypothetical protein
YP_001342718.1	PFAM: Beta-ketoacyl synthase; KEGG: pen:PSEEN0348 3-oxoacyl-[acyl-carrier-protein] synthase (beta-ketoacyl-ACP synthase)
YP_001342719.1	KEGG: rme:Rmet_4390 hypothetical protein
YP_001342720.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_001342721.1	PFAM: Beta-ketoacyl synthase; KEGG: shw:Sputw3181_0285 beta-ketoacyl synthase
YP_001342722.1	PFAM: nitroreductase; KEGG: csa:Csal_0202 nitroreductase
YP_001342723.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pcr:Pcryo_1893 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_001342724.1	PFAM: FAD dependent oxidoreductase; KEGG: bja:bll4301 putative oxidoreductase protein
YP_001342725.1	PFAM: heat shock protein Hsp20; KEGG: sde:Sde_2837 molecular chaperone (small heat shock protein)
YP_001342726.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfr:Sfri_1404 transcriptional regulator, LysR family protein
YP_001342727.1	PFAM: nitroreductase; KEGG: pha:PSHAa1234 major NAD(P)H-flavin oxidoreductase
YP_001342728.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: zmo:ZMO0919 two-component response regulator
YP_001342729.1	PFAM: protein of unknown function DUF924; KEGG: cps:CPS_2824 hypothetical protein
YP_001342730.1	SMART: helix-turn-helix domain protein; KEGG: pen:PSEEN4322 transcriptional regulator, Cro/CI family
YP_001342731.1	PFAM: N-formylglutamate amidohydrolase; KEGG: pau:PA14_67240 N-formylglutamate amidohydrolase
YP_001342732.1	catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway
YP_001342733.1	catalyzes the degradation of histidine to urocanate and ammmonia
YP_001342734.1	catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism
YP_001342735.1	catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate
YP_001342736.1	PFAM: protein of unknown function DUF886; KEGG: sdn:Sden_1080 protein of unknown function DUF886
YP_001342737.1	TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: psb:Psyr_0366 histidine utilization repressor
YP_001342738.1	PFAM: cytochrome B561; KEGG: pat:Patl_2219 cytochrome b561
YP_001342739.1	KEGG: gfo:orf490 conserved hypothetical protein, secreted-possibly transcriptional activator
YP_001342740.1	catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters
YP_001342741.1	PFAM: Uncharacterized protein UPF0065; KEGG: rde:RD1_1867 exported protein, putative
YP_001342742.1	KEGG: rde:RD1_1866 hypothetical protein
YP_001342743.1	PFAM: protein of unknown function DUF112 transmembrane; KEGG: rde:RD1_1865 integral membrane protein, putative
YP_001342744.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ppu:PP_3950 methyl-accepting chemotaxis transducer
YP_001342745.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: csa:Csal_0292 4-hydroxyphenylpyruvate dioxygenase
YP_001342746.1	TIGRFAM: pca operon transcription factor PcaQ; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_PE00060 transcriptional regulator (activator) protein of the pca operon , LysR family
YP_001342747.1	PFAM: Auxin Efflux Carrier; KEGG: azo:azo2534 putative malonate transporter
YP_001342748.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_001342749.1	PFAM: Auxin Efflux Carrier; KEGG: eba:ebA5059 predicted permease
YP_001342750.1	PFAM: regulatory protein GntR HTH; KEGG: rle:pRL110072 putative GntR family transcriptional regulator
YP_001342751.1	PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: csa:Csal_0293 shikimate 5-dehydrogenase
YP_001342752.1	extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway
YP_001342753.1	extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway
YP_001342754.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rle:RL2855 putative LysR family transcriptional regulatory protein
YP_001342755.1	PFAM: oxidoreductase domain protein; KEGG: rpa:RPA4703 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase
YP_001342756.1	PFAM: aldo/keto reductase; KEGG: csa:Csal_1438 aldo/keto reductase
YP_001342757.1	catalyzes the formation of oxaloacetate from pyruvate
YP_001342758.1	biotin carboxylase; with subunit B, the carboxyltansferase/biotincarboxyl carrier subunit catalyzes the formation of oxaloacetate from pyruvate
YP_001342759.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: csa:Csal_1554 transcriptional regulator, LysR family
YP_001342760.1	TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: pat:Patl_3477 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor
YP_001342761.1	TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein; KEGG: pat:Patl_3477 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor
YP_001342762.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pst:PSPTO_2626 transcriptional regulator, LysR family
YP_001342763.1	PFAM: Uncharacterized protein UPF0065; KEGG: ecp:ECP_4043 hypothetical protein
YP_001342765.1	PFAM: protein of unknown function DUF112 transmembrane; KEGG: bha:BH2009 hypothetical protein
YP_001342766.1	KEGG: bpa:BPP2143 hypothetical protein
YP_001342767.1	PFAM: Rhodanese domain protein; KEGG: vei:Veis_4136 rhodanese domain protein
YP_001342768.1	TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: vpa:VP1182 cystathionine beta-lyase
YP_001342769.1	TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: maq:Maqu_0296 sulfate transporter
YP_001342770.1	extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway
YP_001342771.1	extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway
YP_001342772.1	PFAM: amidohydrolase 2; KEGG: rle:pRL120277 putative 2-pyrone-4,6-dicarboxylic acid hydrolase
YP_001342773.1	PFAM: protein of unknown function DUF453; KEGG: nar:Saro_2818 protein of unknown function DUF453
YP_001342774.1	TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; PFAM: Dimethylmenaquinone methyltransferase; KEGG: nar:Saro_2817 dimethylmenaquinone methyltransferase
YP_001342775.1	PFAM: amidohydrolase 2; KEGG: pna:Pnap_2032 amidohydrolase 2
YP_001342776.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: chy:CHY_1301 TRAP dicarboxylate transporter, DctP subunit
YP_001342777.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: rfr:Rfer_4195 tripartite ATP-independent periplasmic transporter, DctQ component
YP_001342778.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rde:RD1_2314 TRAP-type transporter, DctM subunit, putative
YP_001342779.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: hne:HNE_1052 antioxidant, AhpC/TSA family
YP_001342780.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ilo:IL2235 methyl-accepting chemotaxis protein (contains HAMP domain)
YP_001342781.1	PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: psp:PSPPH_1969 transcriptional regulator, GntR family
YP_001342782.1	KEGG: sde:Sde_2582 TonB-like
YP_001342783.1	PFAM: protein of unknown function DUF501; KEGG: csa:Csal_3040 hypothetical protein
YP_001342784.1	KEGG: aha:AHA_0302 hypothetical protein
YP_001342785.1	TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: hch:HCH_06965 glycerol kinase
YP_001342786.1	PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; regulatory protein DeoR; KEGG: csa:Csal_2105 transcriptional regulator, DeoR family
YP_001342787.1	in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane
YP_001342788.1	PFAM: protein of unknown function DUF81; KEGG: msu:MS0868 predicted permeases
YP_001342789.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pst:PSPTO_1887 transcriptional regulator, LysR family
YP_001342790.1	catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent
YP_001342791.1	KEGG: pat:Patl_1777 hypothetical protein
YP_001342793.1	PFAM: phosphoribulokinase/uridine kinase; KEGG: osa:4347509 Os09g0505800
YP_001342794.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: psb:Psyr_4776 Rieske [2Fe-2S] region
YP_001342795.1	TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: abo:ABO_0315 heat shock protein DnaJ
YP_001342796.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_001342797.1	PFAM: GrpE protein; KEGG: sde:Sde_2734 GrpE protein
YP_001342798.1	TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: maq:Maqu_3364 DNA repair protein RecN
YP_001342799.1	PFAM: ferric-uptake regulator; KEGG: hch:HCH_01221 Fe2+/Zn2+ uptake regulation protein
YP_001342800.1	PFAM: SmpA/OmlA domain protein; KEGG: noc:Noc_1195 SmpA/OmlA
YP_001342801.1	PFAM: protein of unknown function UPF0125; KEGG: hch:HCH_01218 hypothetical protein
YP_001342802.1	PFAM: cyclase/dehydrase; KEGG: ppr:PBPRA0691 hypothetical protein
YP_001342803.1	PFAM: sodium:neurotransmitter symporter; KEGG: maq:Maqu_0263 sodium:neurotransmitter symporter
YP_001342804.1	TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: hch:HCH_01215 SsrA-binding protein
YP_001342805.1	KEGG: vch:VCA0433 hypothetical protein
YP_001342807.1	KEGG: mca:MCA2959 prophage MuMc02, peptidase, family S24
YP_001342808.1	KEGG: ppu:PP_4152 hypothetical protein
YP_001342809.1	TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein MerR; KEGG: mca:MCA2639 hypothetical protein
YP_001342810.1	KEGG: pfl:PFL_0217 hypothetical protein
YP_001342811.1	PFAM: protein of unknown function DUF1282; KEGG: csa:Csal_2391 protein of unknown function DUF1282
YP_001342812.1	PFAM: chemotaxis sensory transducer; KEGG: shw:Sputw3181_1006 methyl-accepting chemotaxis sensory transducer
YP_001342813.1	subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+
YP_001342814.1	subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_001342815.1	subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone
YP_001342816.1	PFAM: cation antiporter; KEGG: cps:CPS_3815 monovalent cation/proton antiporter, MnhE/PhaE family subunit
YP_001342817.1	subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport
YP_001342818.1	TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+ antiporter subunit; KEGG: pin:Ping_1353 monovalent cation/proton antiporter, MnhG/PhaG subunit
YP_001342819.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; ammonium transporter; PFAM: GGDEF domain containing protein; EAL domain protein; Rh family protein/ammonium transporter; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: pin:Ping_2650 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
YP_001342820.1	KEGG: pat:Patl_0399 hypothetical protein
YP_001342821.1	PFAM: Ppx/GppA phosphatase; KEGG: psb:Psyr_0294 exopolyphosphatase
YP_001342822.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_001342823.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pfo:Pfl_5453 oxidoreductase FAD/NAD(P)-binding
YP_001342825.1	malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate
YP_001342826.1	PFAM: CBS domain containing protein; KEGG: aha:AHA_3571 CBS domains protein
YP_001342827.1	PFAM: Hsp33 protein; KEGG: csa:Csal_2658 HSP33 protein
YP_001342828.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psb:Psyr_0052 ABC transporter
YP_001342829.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_001342830.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_001342831.1	SMART: extracellular solute-binding protein family 3; KEGG: hch:HCH_03474 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
YP_001342832.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_001342833.1	PFAM: CMP/dCMP deaminase zinc-binding; KEGG: psp:PSPPH_1339 cytidine/deoxycytidylate deaminase family protein
YP_001342834.1	PFAM: CBS domain containing protein; KEGG: son:SO0805 CBS domain protein
YP_001342835.1	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: noc:Noc_2609 cold-shock protein, DNA-binding
YP_001342836.1	TIGRFAM: valyl-tRNA synthetase; KEGG: sde:Sde_1369 valyl-tRNA synthetase
YP_001342838.1	PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: pau:PA14_14470 leucine aminopeptidase
YP_001342839.1	PFAM: permease YjgP/YjgQ family protein; KEGG: pau:PA14_14500 putative permease
YP_001342840.1	PFAM: permease YjgP/YjgQ family protein; KEGG: pen:PSEEN4441 hypothetical protein
YP_001342841.1	PFAM: aminotransferase class I and II; KEGG: pst:PSPTO_0970 aminotransferase, classes I and II
YP_001342842.1	TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: maq:Maqu_0674 transcriptional regulator, TraR/DksA family
YP_001342843.1	PFAM: glutamyl-tRNA synthetase class Ic; KEGG: hch:HCH_06257 glutamyl-tRNA synthetase-related protein
YP_001342844.1	PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: ppu:PP_4696 nitrogen regulation protein NR(I)
YP_001342845.1	TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: maq:Maqu_0669 poly(A) polymerase
YP_001342846.1	TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: vpa:VP2505 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin e pyrophosphokinase
YP_001342847.1	TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; KEGG: hch:HCH_06264 3-methyl-2-oxobutanoate hydroxymethyltransferase
YP_001342848.1	TIGRFAM: pantoate--beta-alanine ligase; cytidyltransferase-related domain; PFAM: Pantoate-beta-alanine ligase; KEGG: pfl:PFL_5278 pantoate--beta-alanine ligase
YP_001342849.1	PFAM: phosphoglucose isomerase (PGI); KEGG: saz:Sama_0912 glucose-6-phosphate isomerase
YP_001342850.1	KEGG: azo:azo1851 conserved hypothetical protein
YP_001342851.1	KEGG: cch:Cag_1323 hypothetical protein
YP_001342852.1	PFAM: plasmid stabilization system; KEGG: cch:Cag_1322 hypothetical protein
YP_001342853.1	TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: neu:NE0713 hypothetical protein
YP_001342854.1	TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: sde:Sde_1845 hypothetical protein
YP_001342855.1	KEGG: atc:AGR_pAT_503 hypothetical protein
YP_001342856.1	PFAM: protein of unknown function DUF1349; KEGG: vch:VCA0345 hypothetical protein
YP_001342857.1	PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: bam:Bamb_3660 transcriptional regulator, AraC family
YP_001342858.1	KEGG: bpm:BURPS1710b_A0398 hypothetical protein
YP_001342859.1	Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins
YP_001342860.1	PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: she:Shewmr4_3042 methyl-accepting chemotaxis sensory transducer
YP_001342861.1	PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: bur:Bcep18194_B3158 glucose-methanol-choline oxidoreductase
YP_001342862.1	PFAM: aldehyde dehydrogenase; KEGG: bte:BTH_II0330 phenylacetaldehyde dehydrogenase
YP_001342863.1	activator of genes involved in phenylacetic acid catabolism
YP_001342864.1	TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: plu:plu4538 transcription elongation factor greA (transcript cleavage factor)
YP_001342865.1	TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: maq:Maqu_3358 carbamoyl-phosphate synthase, large subunit
YP_001342866.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_001342867.1	TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein; KEGG: ath:AT1G53280 unknown protein
YP_001342868.1	PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN0835 ribosomal-protein-alanine acetyltransferase RimI
YP_001342870.1	PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: dde:Dde_0395 extracellular solute-binding protein, family 3
YP_001342871.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc03865 putative amino-acid transport system permease ABC transporter protein
YP_001342872.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bam:Bamb_4298 L-carnitine dehydratase/bile acid-inducible protein F
YP_001342873.1	TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: cps:CPS_4027 transporter, BCCT family
YP_001342874.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: cps:CPS_1431 alcohol dehydrogenase, iron-containing
YP_001342875.1	TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: cps:CPS_1432 methylmalonate-semialdehyde dehydrogenase
YP_001342876.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4299 transcriptional regulator, LysR family
YP_001342877.1	PFAM: phosphatidylglycerophosphatase A; KEGG: pau:PA14_11470 phosphatidylglycerophosphatase A
YP_001342878.1	TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: sdn:Sden_1149 thiamine-monophosphate kinase
YP_001342879.1	KEGG: ppr:PBPRA2796 hypothetical protein
YP_001342880.1	TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: pen:PSEEN0592 transcription termination, L factor (N utilization substance protein B)
YP_001342881.1	TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: sde:Sde_3458 diaminohydroxyphosphoribosylaminopyrimidine deaminase., 5-amino-6-(5-phosphoribosylamino)uracil reductase
YP_001342882.1	PFAM: ATP-cone domain protein; KEGG: ilo:IL1871 predicted transcriptional regulator
YP_001342883.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: atc:AGR_L_1699 hypothetical protein
YP_001342884.1	ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence
YP_001342885.1	PFAM: Abi family protein; KEGG: sdn:Sden_0400 Abi-like protein
YP_001342886.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ppr:PBPRB1911 hypothetical protein
YP_001342887.1	PFAM: regulatory protein AsnC/Lrp family; KEGG: pae:PA4508 probable transcriptional regulator
YP_001342888.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: shn:Shewana3_0923 methyl-accepting chemotaxis sensory transducer
YP_001342889.1	KEGG: hch:HCH_03856 hypothetical protein
YP_001342890.1	PFAM: GTP-binding protein HSR1-related; KEGG: hch:HCH_03855 predicted GTPase
YP_001342891.1	TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; KEGG: vfi:VF0402 1-acyl-sn-glycerol-3-phosphate acyltransferase
YP_001342892.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: she:Shewmr4_1077 diguanylate cyclase/phosphodiesterase
YP_001342893.1	PFAM: protein of unknown function DUF890; KEGG: ppr:PBPRB0892 hypothetical SAM-dependent methyltransferase
YP_001342894.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vfi:VF0021 transcriptional regulators, LysR family
YP_001342895.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: shm:Shewmr7_0525 protein of unknown function DUF6, transmembrane
YP_001342896.1	KEGG: net:Neut_1871 hypothetical protein
YP_001342897.1	PFAM: EAL domain protein; KEGG: ppr:PBPRA1523 hypothetical protein
YP_001342898.1	KEGG: sde:Sde_2838 lipoprotein, putative
YP_001342899.1	KEGG: xac:XAC1382 hypothetical protein
YP_001342900.1	KEGG: psb:Psyr_0955 hypothetical protein
YP_001342901.1	PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: sde:Sde_2466 cyclopropane-fatty-acyl-phospholipid synthase
YP_001342902.1	PFAM: protein of unknown function DUF1365; KEGG: sde:Sde_2467 hypothetical protein
YP_001342903.1	PFAM: amine oxidase; KEGG: psb:Psyr_0958 amine oxidase, flavin-containing
YP_001342904.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sde:Sde_2469 TonB-dependent receptor
YP_001342905.1	PFAM: protein of unknown function DUF1486; KEGG: pen:PSEEN2706 hypothetical protein
YP_001342906.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sde:Sde_2471 sigma-24 (FecI-like)
YP_001342907.1	TIGRFAM: anti-sigma factor, putative, ChrR family; KEGG: sde:Sde_2472 anti-sigm factor, ChrR
YP_001342908.1	KEGG: hch:HCH_01153 hypothetical protein
YP_001342909.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: wsu:WS1977 putative hemolysin
YP_001342910.1	PFAM: glycoside hydrolase family 13 domain protein; KEGG: dde:Dde_2682 isoamylase protein-like
YP_001342911.1	catalyzes the formation of betaine from betaine aldehyde
YP_001342912.1	catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine
YP_001342913.1	PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: sit:TM1040_1036 twin-arginine translocation pathway signal
YP_001342914.1	KEGG: sde:Sde_3871 hypothetical protein
YP_001342915.1	PFAM: heat shock protein DnaJ domain protein; KEGG: aha:AHA_0547 molecular chaperones
YP_001342916.1	PFAM: MltA domain protein; 3D domain protein; KEGG: aha:AHA_2336 membrane-bound lytic murein transglycosylase A
YP_001342917.1	TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: aeh:Mlg_1845 TonB family protein
YP_001342918.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pat:Patl_2277 biopolymer transport protein ExbD/TolR
YP_001342919.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: hha:Hhal_0453 biopolymer transport protein ExbD/TolR
YP_001342920.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: hha:Hhal_0454 MotA/TolQ/ExbB proton channel
YP_001342921.1	TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: abo:ABO_1335 magnesium/cobalt transporter, MIT family
YP_001342922.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csa:Csal_0123 ABC transporter related
YP_001342923.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ecj:JW5545 predicted amino-acid transporter subunit
YP_001342924.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_1049 general amino acid ABC transporter, permease protein
YP_001342925.1	SMART: extracellular solute-binding protein family 3; KEGG: hch:HCH_05807 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
YP_001342926.1	PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: vpa:VP1328 putative transcription regulator
YP_001342927.1	TIGRFAM: isoaspartyl dipeptidase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: ecp:ECP_4664 isoaspartyl dipeptidase
YP_001342928.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: csa:Csal_2720 hypothetical protein
YP_001342929.1	PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: csa:Csal_2719 transcriptional regulator, AraC family
YP_001342930.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: vpa:VPA1227 hypothetical protein
YP_001342931.1	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_4258 drug resistance transporter, Bcr/CflA subfamily
YP_001342932.1	PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bur:Bcep18194_B0632 hydroxydechloroatrazine ethylaminohydrolase
YP_001342933.1	PFAM: NMT1/THI5 like domain protein; KEGG: rle:pRL110614 hypothetical protein
YP_001342934.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mes:Meso_0837 transcriptional regulator, LysR family
YP_001342935.1	PFAM: aldehyde dehydrogenase; KEGG: sit:TM1040_3325 aldehyde dehydrogenase
YP_001342936.1	catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate
YP_001342937.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rfr:Rfer_0433 short-chain dehydrogenase/reductase SDR
YP_001342938.1	PFAM: protein of unknown function DUF1238; KEGG: mes:Meso_0841 protein of unknown function DUF1238
YP_001342939.1	PFAM: inner-membrane translocator; KEGG: mes:Meso_0840 inner-membrane translocator
YP_001342940.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mes:Meso_0839 ABC transporter related
YP_001342941.1	KEGG: mes:Meso_0838 putative sugar uptake ABC transporter periplasmic solute-binding protein precursor
YP_001342942.1	PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: pat:Patl_0610 sodium/hydrogen exchanger
YP_001342943.1	KEGG: sfr:Sfri_2524 hypothetical protein
YP_001342944.1	TIGRFAM: glutamate synthase, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: psb:Psyr_0412 glutamate synthase, NADH/NADPH, small subunit 2
YP_001342945.1	catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate
YP_001342946.1	PFAM: Sporulation domain protein; KEGG: pfl:PFL_0452 DamX protein
YP_001342947.1	PFAM: 3-dehydroquinate synthase; KEGG: pfo:Pfl_0411 3-dehydroquinate synthase
YP_001342948.1	PFAM: shikimate kinase; KEGG: sde:Sde_2686 dihydropteroate synthase
YP_001342949.1	PFAM: type II and III secretion system protein; KEGG: csa:Csal_0612 type II and III secretion system protein
YP_001342952.1	TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: sde:Sde_2692 penicillin-binding protein
YP_001342953.1	PFAM: conserved hypothetical protein 730; KEGG: maq:Maqu_2975 conserved hypothetical protein 730
YP_001342954.1	PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: hch:HCH_05974 malic enzyme
YP_001342955.1	PFAM: nuclease (SNase domain protein); KEGG: pae:PA5048 probable nuclease
YP_001342956.1	PFAM: ribosomal protein L31; KEGG: saz:Sama_0447 ribosomal protein L31
YP_001342957.1	TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: ppu:PP_5088 primosomal protein N'
YP_001342958.1	PFAM: Sporulation domain protein; KEGG: hch:HCH_05978 cell division protein
YP_001342959.1	heat shock protein involved in degradation of misfolded proteins
YP_001342960.1	heat shock protein involved in degradation of misfolded proteins
YP_001342961.1	PFAM: protein of unknown function DUF971; KEGG: csa:Csal_0598 protein of unknown function DUF971
YP_001342962.1	PFAM: protein of unknown function DUF1243; KEGG: hch:HCH_01081 hypothetical protein
YP_001342963.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: bam:Bamb_4637 protein of unknown function DUF6, transmembrane
YP_001342964.1	PFAM: Asparaginase/glutaminase; KEGG: shw:Sputw3181_1933 L-asparaginases, type I
YP_001342965.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_001342966.1	TIGRFAM: threonine dehydratase, biosynthetic; PFAM: Threonine dehydratase domain protein; Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pau:PA14_04320 threonine dehydratase, biosynthetic
YP_001342967.1	TIGRFAM: ribose 5-phosphate isomerase; PFAM: Ribose 5-phosphate isomerase; KEGG: ppu:PP_5150 ribose 5-phosphate isomerase
YP_001342968.1	PFAM: Mg2 transporter protein CorA family protein; KEGG: sde:Sde_0125 magnesium transporter, putative
YP_001342969.1	PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: saz:Sama_0599 fructose-1,6-bisphosphatase
YP_001342970.1	TIGRFAM: flavoprotein WrbA; PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: hha:Hhal_0608 flavoprotein WrbA
YP_001342971.1	PFAM: sugar fermentation stimulation protein; KEGG: maq:Maqu_0675 sugar fermentation stimulation protein
YP_001342972.1	PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: eca:ECA2787 AraC-family transcriptional regulator
YP_001342973.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: eca:ECA2788 LysE-family translocator
YP_001342974.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vpa:VP0027 putative transcriptional regulator, LysR family
YP_001342975.1	PFAM: major facilitator superfamily MFS_1; KEGG: vpa:VPA1283 putative MFS transporter
YP_001342976.1	PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: cno:NT01CX_2156 ATPase AAA-like protein
YP_001342977.1	PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cno:NT01CX_2155 hypothetical protein
YP_001342978.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_001342979.1	TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; KEGG: pen:PSEEN4393 inosine-5-monophosphate dehydrogenase
YP_001342980.1	TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: sde:Sde_1458 exodeoxyribonuclease VII
YP_001342981.1	PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_A4727 major facilitator superfamily (MFS_1) transporter
YP_001342982.1	PFAM: protein of unknown function DUF81; KEGG: pau:PA14_04440 putative permease
YP_001342983.1	PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pol:Bpro_1721 peptidase dimerisation
YP_001342984.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_A4729 transcriptional regulator, LysR family
YP_001342985.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ppr:PBPRA1254 putative methyl-accepting chemotaxis protein
YP_001342986.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: hch:HCH_00696 sigma 54-dependent transcriptional activator containing CheY-like receiver domain
YP_001342987.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: hch:HCH_00695 signal transduction histidine kinase
YP_001342988.1	PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: hch:HCH_00693 cytochrome bd-type quinol oxidase, subunit 1
YP_001342989.1	TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: hch:HCH_00692 cytochrome d ubiquinol oxidase, subunit II
YP_001342990.1	TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bha:BH2945 hypothetical protein
YP_001342991.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: afu:AF0635 immunogenic protein
YP_001342992.1	KEGG: hch:HCH_01635 ABC-type Fe3+ transport system, periplasmic component
YP_001342993.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: hch:HCH_01636 signal transduction histidine kinase
YP_001342994.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: hch:HCH_01637 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
YP_001342995.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: bxe:Bxe_A0745 drug/metabolite efflux pump, DME (10TM) family, DMT superfamily
YP_001342996.1	PFAM: Ion transport protein; KEGG: maq:Maqu_3143 ion transport protein
YP_001342997.1	PFAM: aldehyde dehydrogenase; KEGG: rsp:RSP_2372 aldehyde dehydrogenase (NAD-dependent)
YP_001342998.1	PFAM: flavin-containing monooxygenase FMO; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gvi:gll1964 dimethylaniline monoxygenase
YP_001342999.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rsp:RSP_2371 3-oxoacyl-(acyl-carrier protein) reductase / short-chain dehydrogenase/reductase SDR
YP_001343000.1	PFAM: PfkB domain protein; KEGG: rsp:RSP_2370 putative sugar kinase
YP_001343001.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_2367 ABC sugar (ribose) transporter, inner membrane subunit
YP_001343002.1	PFAM: inner-membrane translocator; KEGG: rsp:RSP_2368 ABC sugar (ribose) transporter, inner membrane subunit
YP_001343003.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2366 ABC sugar (ribose) transporter, fused ATPase subunits
YP_001343004.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rsp:RSP_2365 ABC sugar (ribose) transporter, periplasmic substrate-binding subunit
YP_001343005.1	PFAM: class II aldolase/adducin family protein; KEGG: bja:bll6170 L-fuculose phosphate aldolase
YP_001343006.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rsp:RSP_2363 short-chain dehydrogenase/reductase
YP_001343007.1	PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: rsp:RSP_2362 transcriptional regulator, GntR family
YP_001343008.1	PFAM: major facilitator superfamily MFS_1; KEGG: rsp:RSP_3245 possible transporter, major facilitator superfamily (MFS)
YP_001343009.1	PFAM: MaoC domain protein dehydratase; KEGG: rha:RHA1_ro08872 possible acyl dehydratase
YP_001343010.1	PFAM: protein of unknown function DUF35; KEGG: rha:RHA1_ro08875 hypothetical protein
YP_001343011.1	KEGG: rha:RHA1_ro08876 probable acetyl-CoA C-acetyltransferase
YP_001343012.1	TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: ilo:IL0879 acetoacetyl-CoA synthase
YP_001343013.1	TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: ppu:PP_4636 beta-ketothiolase
YP_001343014.1	KEGG: pat:Patl_3711 hypothetical protein
YP_001343015.1	KEGG: vvu:VV2_0921 small-conductance mechanosensitive channel
YP_001343016.1	PFAM: Auxin Efflux Carrier; KEGG: dar:Daro_0205 auxin efflux carrier
YP_001343017.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sdy:SDY_4130 putative periplasmic ribose-binding protein of ABC transport system
YP_001343018.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: atc:AGR_C_98 putative ATP-binding ABC transporter protein
YP_001343019.1	PFAM: inner-membrane translocator; KEGG: sme:SMc02170 putative permease ABC transporter protein
YP_001343020.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: pde:Pden_0505 periplasmic binding protein/LacI transcriptional regulator
YP_001343021.1	TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: pin:Ping_2805 sensor histidine kinase/response regulator fused protein, ATPase domain
YP_001343022.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pin:Ping_2802 two component transcriptional regulator, winged helix family protein
YP_001343023.1	PFAM: ferredoxin; KEGG: bpe:BP1195 ferredoxin
YP_001343024.1	KEGG: tcx:Tcr_0554 ATP-dependent helicase HrpB
YP_001343025.1	TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases; KEGG: pin:Ping_0585 ATP-dependent helicase HrpB
YP_001343026.1	PFAM: purine or other phosphorylase family 1; KEGG: nmu:Nmul_A0542 response regulator receiver domain protein (CheY-like)
YP_001343027.1	KEGG: xcb:XC_2430 predicted transcriptional regulator
YP_001343028.1	KEGG: bam:Bamb_1969 hypothetical protein
YP_001343029.1	KEGG: bam:Bamb_1968 hypothetical protein
YP_001343030.1	PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: bam:Bamb_1967 AAA ATPase, central domain protein
YP_001343031.1	PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: bam:Bamb_1965 exonuclease, RNase T and DNA polymerase III
YP_001343033.1	KEGG: nmu:Nmul_D2827 hypothetical protein
YP_001343034.1	KEGG: noc:Noc_0672 transposase, IS4
YP_001343036.1	PFAM: transposase IS4 family protein; KEGG: noc:Noc_0672 transposase, IS4
YP_001343037.1	KEGG: lil:LA3180 hypothetical protein
YP_001343038.1	KEGG: rso:RS05060 putative signal peptide protein
YP_001343042.1	KEGG: hypothetical protein
YP_001343043.1	KEGG: ilo:IL1162 antitoxin of toxin-antitoxin stability system, StbD family
YP_001343044.1	TIGRFAM: prevent-host-death family protein; KEGG: ppd:Ppro_2533 prevent-host-death family protein
YP_001343045.1	KEGG: ava:Ava_3593 hypothetical protein
YP_001343046.1	PFAM: protein of unknown function DUF262; KEGG: ana:alr4229 hypothetical protein
YP_001343047.1	PFAM: helix-turn-helix domain protein; KEGG: vpa:VPA1391 hypothetical protein
YP_001343049.1	KEGG: vvu:VV1_3188 FOG: GGDEF domain
YP_001343050.1	PFAM: phage integrase family protein; KEGG: pst:PSPTO_4748 site-specific recombinase, phage integrase family
YP_001343051.1	KEGG: pst:PSPTO_4747 hypothetical protein
YP_001343052.1	PFAM: phage integrase family protein; KEGG: pst:PSPTO_4746 site-specific recombinase, phage integrase family domain protein
YP_001343053.1	KEGG: bxe:Bxe_A3509 hypothetical protein
YP_001343054.1	TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent domain protein; KEGG: pst:PSPTO_4735 ATP-dependent helicase HrpB
YP_001343055.1	PFAM: protein of unknown function DUF227; KEGG: dre:557894 hypothetical LOC557894
YP_001343056.1	KEGG: mlo:mlr8221 hypothetical protein
YP_001343057.1	TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; KEGG: pst:PSPTO_0809 hydroxymethylbutenyl pyrophosphate reductase
YP_001343058.1	PFAM: peptidylprolyl isomerase FKBP-type; KEGG: sde:Sde_2564 ribosomal protein S2
YP_001343059.1	TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: csa:Csal_0482 lipoprotein signal peptidase
YP_001343060.1	TIGRFAM: isoleucyl-tRNA synthetase; KEGG: maq:Maqu_0862 isoleucyl-tRNA synthetase
YP_001343061.1	TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: pen:PSEEN4693 riboflavin biosynthesis protein RibF
YP_001343062.1	TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: maq:Maqu_0860 integral membrane protein MviN
YP_001343063.1	PFAM: ribosomal protein S20; KEGG: sde:Sde_1013 ribosomal protein S20p
YP_001343064.1	PFAM: diacylglycerol kinase; KEGG: aha:AHA_2732 diacylglycerol kinase
YP_001343065.1	TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; KEGG: pen:PSEEN0829 gamma-glutamyl kinase
YP_001343066.1	TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP-binding protein HSR1-related; GTP1/OBG sub domain protein; KEGG: maq:Maqu_0857 GTP1/OBG sub domain protein
YP_001343067.1	involved in the peptidyltransferase reaction during translation
YP_001343068.1	PFAM: ribosomal protein L21; KEGG: maq:Maqu_0855 ribosomal protein L21
YP_001343069.1	PFAM: Polyprenyl synthetase; KEGG: vfi:VF0277 farnesyl pyrophosphate synthetase
YP_001343070.1	PFAM: alpha/beta hydrolase fold; KEGG: azo:azo2125 conserved hypothetical protein
YP_001343071.1	catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP
YP_001343072.1	PFAM: Beta-ketoacyl synthase; KEGG: pst:PSPTO_2210 3-oxoacyl-(acyl-carrier-protein) synthase I
YP_001343073.1	TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; KEGG: csa:Csal_0455 phospholipid/glycerol acyltransferase
YP_001343074.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: vch:VCA0921 hypothetical protein
YP_001343075.1	PFAM: peptidase M16 domain protein; Peptidase M16C associated domain protein; KEGG: sde:Sde_1857 putative metalloprotease
YP_001343076.1	PFAM: Smr protein/MutS2; KEGG: hch:HCH_05041 hypothetical protein
YP_001343077.1	TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: son:SO4028 single-strand binding protein
YP_001343078.1	PFAM: major facilitator superfamily MFS_1; KEGG: maq:Maqu_0747 major facilitator superfamily MFS_1
YP_001343079.1	TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: abo:ABO_0427 excinuclease ABC, A subunit
YP_001343080.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_001343081.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_001343082.1	PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: hch:HCH_06194 ribosomal protein S4
YP_001343083.1	PFAM: ribosomal protein S11; KEGG: hch:HCH_06195 ribosomal protein S11
YP_001343084.1	PFAM: ribosomal protein S13; KEGG: shw:Sputw3181_0178 ribosomal protein S13
YP_001343085.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_001343086.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_001343087.1	PFAM: ribosomal protein L15; KEGG: plu:plu4707 50S ribosomal protein L15
YP_001343088.1	PFAM: ribosomal protein L30; KEGG: shn:Shewana3_0217 ribosomal protein L30
YP_001343089.1	TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5; KEGG: maq:Maqu_0736 ribosomal protein S5
YP_001343090.1	TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: aci:ACIAD3203 50S ribosomal protein L18
YP_001343091.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_001343092.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_001343093.1	PFAM: ribosomal protein S14; KEGG: pha:PSHAa2817 30S ribosomal subunit protein S14
YP_001343094.1	PFAM: ribosomal protein L5; KEGG: pha:PSHAa2818 50S ribosomal subunit protein L5
YP_001343095.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_001343096.1	TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: abo:ABO_0407 50S ribosomal protein L14
YP_001343097.1	PFAM: ribosomal protein S17; KEGG: hch:HCH_06208 ribosomal protein S17
YP_001343098.1	PFAM: ribosomal protein L29; KEGG: csa:Csal_0429 ribosomal protein L29
YP_001343099.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_001343100.1	TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein; KEGG: maq:Maqu_0725 ribosomal protein S3
YP_001343101.1	TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: pfl:PFL_5577 ribosomal protein L22
YP_001343102.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_001343103.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_001343104.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_001343105.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_001343106.1	PFAM: ribosomal protein L3; KEGG: pin:Ping_3524 ribosomal protein L3
YP_001343107.1	PFAM: ribosomal protein S10; KEGG: maq:Maqu_0718 ribosomal protein S10
YP_001343108.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_001343109.1	TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: hch:HCH_06220 translation elongation factor G
YP_001343110.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_001343111.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_001343112.1	TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein; KEGG: pau:PA14_08780 DNA-directed RNA polymerase beta* chain
YP_001343113.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_001343114.1	TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: csa:Csal_0413 ribosomal protein L7/L12
YP_001343115.1	PFAM: ribosomal protein L10; KEGG: ppu:PP_0445 ribosomal protein L10
YP_001343116.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_001343117.1	binds directly to 23S ribosomal RNA
YP_001343118.1	TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides Ouzounis Woese) domain protein; KEGG: pfo:Pfl_5091 NusG antitermination factor
YP_001343119.1	TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: pen:PSEEN0476 preprotein translocase, membrane component, transport across inner membrane (general secretory pathway)
YP_001343120.1	PFAM: Sporulation domain protein; KEGG: hch:HCH_06232 hypothetical protein
YP_001343121.1	TIGRFAM: putative transcriptional activator, Baf family; PFAM: Bvg accessory factor; KEGG: pau:PA14_08630 putative transcriptional regulator
YP_001343122.1	TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein; KEGG: psb:Psyr_4564 biotin--acetyl-CoA-carboxylase ligase
YP_001343123.1	KEGG: reh:H16_A2163 carboxylesterase
YP_001343124.1	KEGG: ppr:PBPRA3447 hypothetical protein
YP_001343125.1	PFAM: glycoside hydrolase family 1; KEGG: cps:CPS_3706 beta-glucosidase
YP_001343126.1	involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans
YP_001343127.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; KEGG: rfr:Rfer_2016 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
YP_001343128.1	TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: vpa:VP2283 uracil permease
YP_001343129.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pfl:PFL_0145 RNA polymerase sigma-70 factor, ECF subfamily
YP_001343130.1	KEGG: pfl:PFL_0146 sigma factor regulatory protein, FecR/PupR family
YP_001343131.1	PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: aci:ACIAD1472 putative receptor protein
YP_001343132.1	KEGG: plu:plu3515 hypothetical protein
YP_001343133.1	KEGG: aci:ACIAD1474 conserved hypothetical protein; putative peptide signal
YP_001343134.1	PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_3497 peptidase-like
YP_001343135.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_3958 binding-protein-dependent transport systems inner membrane component
YP_001343136.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_3957 binding-protein-dependent transport systems inner membrane component
YP_001343137.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mes:Meso_3956 ABC transporter related
YP_001343138.1	PFAM: extracellular solute-binding protein family 1; KEGG: mes:Meso_3955 twin-arginine translocation pathway signal
YP_001343139.1	PFAM: chemotaxis sensory transducer; KEGG: pha:PSHAa2651 methyl-accepting chemotaxis protein
YP_001343140.1	PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sde:Sde_3388 D-3-phosphoglycerate dehydrogenase
YP_001343141.1	catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs
YP_001343142.1	KEGG: hch:HCH_05283 hypothetical protein
YP_001343143.1	PFAM: purine or other phosphorylase family 1; KEGG: gka:GK2542 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
YP_001343145.1	KEGG: vfi:VF0707 LuxP protein precursor
YP_001343146.1	TIGRFAM: ketose-bisphosphate aldolase; fructose-bisphosphate aldolase, class II, Calvin cycle subtype; PFAM: ketose-bisphosphate aldolase class-II; KEGG: hch:HCH_01538 fructose-bisphosphate aldolase, class II, Calvin cycle subtype
YP_001343147.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_001343148.1	PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: csa:Csal_0372 glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)
YP_001343149.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_001343150.1	PFAM: S-adenosylmethionine synthetase; KEGG: hch:HCH_01533 S-adenosylmethionine synthetase
YP_001343151.1	PFAM: protein of unknown function DUF558; KEGG: cps:CPS_1254 conserved hypothetical protein TIGR00046
YP_001343152.1	TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: saz:Sama_3261 type I secretion outer membrane protein, TolC
YP_001343153.1	TIGRFAM: glutathione synthetase; PFAM: glutathione synthetase domain protein; glutathione synthetase ATP-binding; RimK domain protein ATP-grasp; KEGG: psb:Psyr_0487 glutathione synthetase
YP_001343154.1	TIGRFAM: TonB family protein; KEGG: pau:PA14_05300 putative TonB domain protein
YP_001343155.1	binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters
YP_001343156.1	PFAM: protein of unknown function DUF214; KEGG: ilo:IL0228 cell division protein FtsX
YP_001343157.1	TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: maq:Maqu_3745 cell division ATP-binding protein FtsE
YP_001343158.1	TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; KEGG: maq:Maqu_3746 signal recognition particle-docking protein FtsY
YP_001343160.1	TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: sfx:S4280 putative methylase
YP_001343161.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: vvy:VV2344 methyl-accepting chemotaxis protein
YP_001343162.1	TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; KEGG: csa:Csal_3057 homoserine O-acetyltransferase
YP_001343163.1	TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; KEGG: pfl:PFL_5843 MetW protein
YP_001343164.1	TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: sde:Sde_3647 ribosomal protein L33
YP_001343165.1	KEGG: pen:PSEEN0311 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_001343166.1	TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: abo:ABO_0808 choline/carnitine/betaine transporter family protein
YP_001343167.1	PFAM: protein of unknown function UPF0016; KEGG: maq:Maqu_0115 protein of unknown function UPF0016
YP_001343168.1	PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: maq:Maqu_0267 cyclic nucleotide-binding protein
YP_001343169.1	3'-5' exonuclease of DNA polymerase III
YP_001343170.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: hch:HCH_04796 transcriptional regulator
YP_001343171.1	PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: csa:Csal_0261 alpha amylase
YP_001343172.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sme:SMc03065 alpha-glucosides transport ATP-binding ABC transporter protein
YP_001343173.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc03063 alpha-glucosides transport system permease ABC transporter protein
YP_001343174.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc03062 alpha-glucosides transport system permease ABC transporter protein
YP_001343175.1	PFAM: extracellular solute-binding protein family 1; KEGG: pin:Ping_2910 ABC alpha-glucoside transporter extracellular solute-binding protein, family 1
YP_001343176.1	PFAM: PfkB domain protein; KEGG: xft:PD1163 fructokinase
YP_001343177.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: csa:Csal_2418 two component transcriptional regulator, winged helix family
YP_001343178.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: hch:HCH_06084 signal transduction histidine kinase
YP_001343179.1	PFAM: extracellular solute-binding protein family 1; KEGG: hch:HCH_06083 ABC-type sugar transport system, periplasmic component
YP_001343180.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_06081 ABC-type sugar transport system, permease components
YP_001343181.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_2414 binding-protein-dependent transport systems inner membrane component
YP_001343182.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_06079 ABC-type sugar transport system, ATPase components
YP_001343183.1	PFAM: Peptidoglycan-binding LysM; KEGG: vpa:VPA1263 hypothetical protein
YP_001343187.1	catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides
YP_001343189.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: sde:Sde_2224 succinic semialdehyde dehydrogenase
YP_001343190.1	KEGG: hch:HCH_02015 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
YP_001343191.1	TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; KEGG: sde:Sde_3683 tRNA nucleotidyltransferase
YP_001343192.1	PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: csa:Csal_3207 conserved hypothetical protein 255
YP_001343193.1	PFAM: HipA domain protein; KEGG: ppr:PBPRA0193 hypothetical protein
YP_001343194.1	KEGG: ppr:PBPRA0192 hypothetical protein
YP_001343195.1	KEGG: vvy:VV0259 hypothetical protein
YP_001343196.1	PFAM: phosphoesterase PA-phosphatase related; KEGG: vfi:VF1206 phosphoesterase, PAP2 family
YP_001343197.1	KEGG: pmu:PM0417 hypothetical HI1476
YP_001343198.1	KEGG: pin:Ping_3076 hypothetical protein
YP_001343199.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor transmembrane region; KEGG: shn:Shewana3_0308 diguanylate cyclase
YP_001343200.1	PFAM: Ion transport protein; KEGG: shw:Sputw3181_3586 ion transport protein
YP_001343201.1	KEGG: bfs:BF1126 hypothetical protein
YP_001343202.1	KEGG: plt:Plut_0839 hypothetical protein
YP_001343203.1	KEGG: ppr:PBPRA0195 hypothetical protein
YP_001343204.1	TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: spa:M6_Spy1160 type II restriction-modification system methylation subunit
YP_001343205.1	KEGG: she:Shewmr4_3199 hypothetical protein
YP_001343206.1	PFAM: HipA domain protein; KEGG: pha:PSHAa0453 hypothetical protein
YP_001343207.1	KEGG: ppr:PBPRA0192 hypothetical protein
YP_001343208.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pat:Patl_1909 transcriptional regulator, AraC family
YP_001343209.1	PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa2409 permease
YP_001343210.1	KEGG: rso:RS05433 probable transmembrane protein
YP_001343211.1	PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: tcx:Tcr_1224 transcriptional regulator, AraC family
YP_001343212.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: shn:Shewana3_0867 ATP-binding region, ATPase domain protein domain protein
YP_001343213.1	PFAM: EAL domain protein; response regulator receiver; KEGG: hch:HCH_01619 FOG: EAL domain
YP_001343214.1	PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; KEGG: pha:PSHAa2790 guanylate kinase
YP_001343215.1	TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: pau:PA14_70450 RNA polymerase omega subunit
YP_001343216.1	KEGG: ppu:PP_5302 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region
YP_001343217.1	TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: pat:Patl_0350 putative endoribonuclease L-PSP
YP_001343218.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: mfa:Mfla_2045 NAD-dependent epimerase/dehydratase
YP_001343219.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_6070 oxidative stress regulatory protein OxyR
YP_001343220.1	TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pfl:PFL_6071 ATP-dependent DNA helicase RecG
YP_001343221.1	KEGG: dar:Daro_1500 hypothetical protein
YP_001343222.1	PFAM: regulatory protein AsnC/Lrp family; KEGG: vvy:VV1321 leucine-responsive regulatory protein
YP_001343223.1	SMART: extracellular solute-binding protein family 3; KEGG: rru:Rru_A1004 lysine-arginine-ornithine-binding periplasmic protein
YP_001343224.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A1003 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine
YP_001343225.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: psp:PSPPH_1132 amino acid ABC transporter, permease protein
YP_001343226.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vvy:VV1554 ABC-type polar amino acid transport system, ATPase component
YP_001343227.1	PFAM: Metal-dependent hydrolase HDOD; KEGG: pfo:Pfl_5560 predicted signal transduction protein
YP_001343228.1	PFAM: Chorismate lyase; KEGG: aeh:Mlg_2439 chorismate lyase
YP_001343229.1	TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: pin:Ping_3469 4-hydroxybenzoate polyprenyl transferase
YP_001343230.1	TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: csa:Csal_3253 two component transcriptional regulator, winged helix family
YP_001343231.1	TIGRFAM: Phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pae:PA5361 two-component sensor PhoR
YP_001343232.1	PFAM: response regulator receiver; KEGG: pst:PSPTO_5482 response regulator
YP_001343233.1	PFAM: protein of unknown function DUF540; KEGG: pfo:Pfl_0886 protein of unknown function DUF540
YP_001343234.1	PFAM: extracellular solute-binding protein family 5; KEGG: aha:AHA_2613 oligopeptide ABC transporter, periplasmic oligopeptide-binding protein
YP_001343235.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_01128 ABC-type dipeptide/oligopeptide/nickel transport system, permease components
YP_001343236.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aha:AHA_2611 oligopeptide ABC transporter, permease protein OppC
YP_001343237.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: spt:SPA1134 oligopeptide transport ATP-binding protein OppD
YP_001343238.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: aha:AHA_2609 oligopeptide ABC transporter, ATP-binding protein OppF
YP_001343239.1	KEGG: csa:Csal_1061 hypothetical protein
YP_001343240.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: csa:Csal_2667 multi-sensor hybrid histidine kinase
YP_001343241.1	PFAM: Hpt domain protein; KEGG: xac:XAC0494 two-component system sensor protein
YP_001343242.1	KEGG: ppu:PP_1877 GAF domain-containing protein
YP_001343243.1	TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: ppu:PP_5325 phosphate transport system regulatory protein PhoU
YP_001343244.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_001343245.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_00752 phosphate ABC transporter, permease protein PtsA
YP_001343246.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_00751 ABC-type uncharacterized transport system, permease component
YP_001343247.1	TIGRFAM: phosphate binding protein; KEGG: hch:HCH_00749 ABC-type phosphate transport system, periplasmic component
YP_001343248.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pfl:PFL_4887 sensor histidine kinase
YP_001343249.1	PFAM: magnesium chelatase ChlI subunit; response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: ecv:APECO1_4339 fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein
YP_001343250.1	KEGG: reu:Reut_D6487 extracellular ligand-binding receptor
YP_001343251.1	TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: bmb:BruAb1_1628 GabD, succinate-semialdehyde dehydrogenase
YP_001343252.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: rle:pRL100135 putative 1,3-propanediol dehydrogenase
YP_001343253.1	KEGG: pfl:PFL_5633 hypothetical protein
YP_001343254.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: mgm:Mmc1_1612 tripartite ATP-independent periplasmic transporter, DctQ component
YP_001343255.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: mgm:Mmc1_1613 TRAP dicarboxylate transporter, DctM subunit
YP_001343256.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rno:362061 crystallin, zeta
YP_001343257.1	PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; KEGG: ppr:PBPRB2001 hypothetical transcriptional regulator, AraC/XylS family
YP_001343258.1	proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain
YP_001343259.1	KEGG: vfi:VFA0830 delta-1-pyrroline-5-carboxylate dehydrogenase
YP_001343260.1	KEGG: xcb:XC_0814 periplasmic iron-binding protein
YP_001343261.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: hch:HCH_01636 signal transduction histidine kinase
YP_001343262.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: hch:HCH_01637 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
YP_001343263.1	PFAM: Uncharacterized protein UPF0065; KEGG: csa:Csal_0726 uncharacterized protein UPF0065
YP_001343264.1	KEGG: maq:Maqu_2896 putative tricarboxylic transport membrane protein
YP_001343265.1	PFAM: protein of unknown function DUF112 transmembrane; KEGG: csa:Csal_0724 protein of unknown function DUF112, transmembrane
YP_001343266.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: hch:HCH_00744 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component
YP_001343267.1	PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bxe:Bxe_A4302 transcriptional regulator, GntR family
YP_001343268.1	PFAM: class II aldolase/adducin family protein; KEGG: bte:BTH_I0804 class II aldolase/adducin domain protein
YP_001343269.1	PFAM: dihydrodipicolinate synthetase; KEGG: bte:BTH_I0803 dihydrodipicolinate synthase, putative
YP_001343270.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: hch:HCH_00744 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component
YP_001343271.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: hch:HCH_00744 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component
YP_001343272.1	PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: sdy:SDY_1847 hypothetical protein
YP_001343273.1	KEGG: cch:Cag_0584 hypothetical protein
YP_001343274.1	PFAM: UvrD/REP helicase; KEGG: sde:Sde_3764 DNA helicase II
YP_001343275.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_001343276.1	KEGG: sfr:Sfri_3568 hypothetical protein
YP_001343277.1	PFAM: phosphoesterase PA-phosphatase related; KEGG: sde:Sde_1770 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family-like
YP_001343278.1	attaches phosphoethanolamine to lipid A at the 1 position of the disaccharide backbone in contrast to other gram-negative bacteria
YP_001343279.1	PFAM: regulatory protein GntR HTH; KEGG: vvu:VV2_1354 transcriptional regulator
YP_001343280.1	PFAM: aminotransferase class V; KEGG: aha:AHA_4239 cysteine desulfurase
YP_001343281.1	PFAM: Fe-S metabolism associated SufE; KEGG: ppr:PBPRA2992 conserved hypothetical protein
YP_001343282.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: hch:HCH_00127 putative threonine efflux protein
YP_001343283.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_4411 transcriptional regulator, LysR family
YP_001343284.1	PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: atc:AGR_L_685 hypothetical ABC transporter ATP-binding protein YliA
YP_001343285.1	PFAM: extracellular solute-binding protein family 5; KEGG: atc:AGR_L_687 oligopeptide ABC transporter (oligopeptide-binding protein)
YP_001343286.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_689 oligopeptide ABC transporter (permease)
YP_001343287.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_692 oligopeptide ABC transporter (permease)
YP_001343288.1	KEGG: atc:AGR_L_695 hypothetical protein
YP_001343289.1	PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: vfi:VF0588 molybdopterin biosynthesis MoeB protein
YP_001343290.1	PFAM: transcriptional regulator TrmB; KEGG: rpa:RPA4161 hypothetical protein
YP_001343291.1	TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: hch:HCH_07070 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit)
YP_001343292.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_001343293.1	TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit; KEGG: pau:PA14_73250 ATP synthase gamma chain
YP_001343294.1	TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: hch:HCH_07073 ATP synthase F1, alpha subunit
YP_001343295.1	TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: pau:PA14_73280 ATP synthase delta chain
YP_001343296.1	TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: csa:Csal_3288 ATP synthase F0, B subunit
YP_001343297.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_001343298.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_001343299.1	PFAM: ATP synthase I chain; KEGG: pfo:Pfl_5737 ATP synthase I chain
YP_001343300.1	TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: pen:PSEEN5551 chromosomal partitioning protein ParB
YP_001343301.1	PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pau:PA14_73350 chromosome partitioning protein
YP_001343302.1	TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: pae:PA5564 glucose inhibited division protein B
YP_001343303.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_001343304.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ilo:IL1440 Zn-dependent alcohol dehydrogenase
YP_001343305.1	PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: csa:Csal_0835 transcriptional regulator, AraC family
YP_001343306.1	PFAM: regulatory protein TetR; KEGG: psb:Psyr_2754 regulatory protein, TetR
YP_001343307.1	TIGRFAM: Quinone oxidoreductase putative YhdH/YhfP; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pha:PSHAa1488 dehydrogenase, NAD(P)-binding domain and GroES-like domain
YP_001343308.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ppr:PBPRB0328 hypothetical sensor histidine kinase
YP_001343309.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ppr:PBPRB0327 putative transcriptional regulatory protein KdpE
YP_001343310.1	PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: ppr:PBPRB0326 putative potassium uptake protein
YP_001343311.1	TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: shw:Sputw3181_4032 potassium uptake protein, TrkH family
YP_001343312.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rle:RL2941 putative short-chain dehydrogenase/oxidoreductase
YP_001343313.1	PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: mlo:mlr2197 probable transcriptional regulator
YP_001343314.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_001343315.1	PFAM: 60 kDa inner membrane insertion protein; KEGG: maq:Maqu_3895 60 kDa inner membrane insertion protein
YP_001343316.1	TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: aci:ACIAD3683 RNase P, protein C5 component, processes tRNA, 4.5S RNA
YP_001343317.1	PFAM: ribosomal protein L34; KEGG: ilo:IL2640 ribosomal protein L34