-- dump date   	20240506_001058
-- class       	Genbank::Contig
-- table       	contig_comment
-- id	comment
NC_014122.1	REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002009.1.REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. WhitmanREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu)REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus MEREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sampleREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at aREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000mREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000mREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: AnaerobeREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shapedREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: ThermophileREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91CREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, MarineREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, LithotrophREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 01:52:34REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 01:52:34 Annotation Pipeline               :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 01:52:34 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 01:52:34 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 01:52:34 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 01:52:34 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 01:52:34 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 01:52:34 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,500REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 01:52:34 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,500 CDSs (total)                      :: 1,454REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 01:52:34 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,500 CDSs (total)                      :: 1,454 Genes (coding)                    :: 1,439REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 01:52:34 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,500 CDSs (total)                      :: 1,454 Genes (coding)                    :: 1,439 CDSs (with protein)               :: 1,439REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 01:52:34 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,500 CDSs (total)                      :: 1,454 Genes (coding)                    :: 1,439 CDSs (with protein)               :: 1,439 Genes (RNA)                       :: 46REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 01:52:34 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,500 CDSs (total)                      :: 1,454 Genes (coding)                    :: 1,439 CDSs (with protein)               :: 1,439 Genes (RNA)                       :: 46 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 01:52:34 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,500 CDSs (total)                      :: 1,454 Genes (coding)                    :: 1,439 CDSs (with protein)               :: 1,439 Genes (RNA)                       :: 46 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 01:52:34 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,500 CDSs (total)                      :: 1,454 Genes (coding)                    :: 1,439 CDSs (with protein)               :: 1,439 Genes (RNA)                       :: 46 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 01:52:34 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,500 CDSs (total)                      :: 1,454 Genes (coding)                    :: 1,439 CDSs (with protein)               :: 1,439 Genes (RNA)                       :: 46 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 01:52:34 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,500 CDSs (total)                      :: 1,454 Genes (coding)                    :: 1,439 CDSs (with protein)               :: 1,439 Genes (RNA)                       :: 46 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 15REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 01:52:34 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,500 CDSs (total)                      :: 1,454 Genes (coding)                    :: 1,439 CDSs (with protein)               :: 1,439 Genes (RNA)                       :: 46 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 15 CDSs (without protein)            :: 15REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 01:52:34 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,500 CDSs (total)                      :: 1,454 Genes (coding)                    :: 1,439 CDSs (with protein)               :: 1,439 Genes (RNA)                       :: 46 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 15 CDSs (without protein)            :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 01:52:34 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,500 CDSs (total)                      :: 1,454 Genes (coding)                    :: 1,439 CDSs (with protein)               :: 1,439 Genes (RNA)                       :: 46 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 15 CDSs (without protein)            :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted)       :: 6 of 15REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 01:52:34 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,500 CDSs (total)                      :: 1,454 Genes (coding)                    :: 1,439 CDSs (with protein)               :: 1,439 Genes (RNA)                       :: 46 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 15 CDSs (without protein)            :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted)       :: 6 of 15 Pseudo Genes (incomplete)         :: 7 of 15REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 01:52:34 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,500 CDSs (total)                      :: 1,454 Genes (coding)                    :: 1,439 CDSs (with protein)               :: 1,439 Genes (RNA)                       :: 46 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 15 CDSs (without protein)            :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted)       :: 6 of 15 Pseudo Genes (incomplete)         :: 7 of 15 Pseudo Genes (internal stop)      :: 4 of 15REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 01:52:34 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,500 CDSs (total)                      :: 1,454 Genes (coding)                    :: 1,439 CDSs (with protein)               :: 1,439 Genes (RNA)                       :: 46 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 15 CDSs (without protein)            :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted)       :: 6 of 15 Pseudo Genes (incomplete)         :: 7 of 15 Pseudo Genes (internal stop)      :: 4 of 15 Pseudo Genes (multiple problems)  :: 2 of 15REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 01:52:34 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,500 CDSs (total)                      :: 1,454 Genes (coding)                    :: 1,439 CDSs (with protein)               :: 1,439 Genes (RNA)                       :: 46 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 15 CDSs (without protein)            :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted)       :: 6 of 15 Pseudo Genes (incomplete)         :: 7 of 15 Pseudo Genes (internal stop)      :: 4 of 15 Pseudo Genes (multiple problems)  :: 2 of 15 CRISPR Arrays                     :: 14REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 01:52:34 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,500 CDSs (total)                      :: 1,454 Genes (coding)                    :: 1,439 CDSs (with protein)               :: 1,439 Genes (RNA)                       :: 46 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 15 CDSs (without protein)            :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted)       :: 6 of 15 Pseudo Genes (incomplete)         :: 7 of 15 Pseudo Genes (internal stop)      :: 4 of 15 Pseudo Genes (multiple problems)  :: 2 of 15 CRISPR Arrays                     :: 14 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002009.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085030 Source DNA and organism available from William B. Whitman (whitman@uga.edu) Contacts: William B. Whitman (whitman@uga.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methanocaldococcus infernus ME Culture Collection ID :: DSM 11812 GOLD Stamp ID         :: Gi02048 Greengenes ID         :: 20 Isolation Site        :: Deep-sea hydrothermal chimney sample                          collected on the Mid-Atlantic Ridge at a                          depth of 3000m Depth                 :: 3000m Oxygen Requirement    :: Anaerobe Cell Shape            :: Coccus-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Thermophile Temperature Optimum   :: 55 - 91C pH                    :: 6.5 Gram Staining         :: gram- Biotic Relationship   :: Free living Diseases              :: None Habitat               :: Deep sea, Marine Energy Source         :: Autotroph, Lithotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 01:52:34 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,500 CDSs (total)                      :: 1,454 Genes (coding)                    :: 1,439 CDSs (with protein)               :: 1,439 Genes (RNA)                       :: 46 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 15 CDSs (without protein)            :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted)       :: 6 of 15 Pseudo Genes (incomplete)         :: 7 of 15 Pseudo Genes (internal stop)      :: 4 of 15 Pseudo Genes (multiple problems)  :: 2 of 15 CRISPR Arrays                     :: 14 ##Genome-Annotation-Data-END## COMPLETENESS: full length.