-- dump date   	20240506_001423
-- class       	Genbank::Contig
-- table       	contig_comment
-- id	comment
NC_015636.1	REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002792.1.REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William WhitmanREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu)REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: JapanREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh waterREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, LithotrophREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: AnaerobeREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: YesREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at theREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough JapanREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shapedREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: ThermophileREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75CREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram-REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22 Pseudo Genes (incomplete)         :: 8 of 22REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22 Pseudo Genes (incomplete)         :: 8 of 22 Pseudo Genes (internal stop)      :: 1 of 22REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22 Pseudo Genes (incomplete)         :: 8 of 22 Pseudo Genes (internal stop)      :: 1 of 22 Pseudo Genes (multiple problems)  :: 2 of 22REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22 Pseudo Genes (incomplete)         :: 8 of 22 Pseudo Genes (internal stop)      :: 1 of 22 Pseudo Genes (multiple problems)  :: 2 of 22 CRISPR Arrays                     :: 7REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22 Pseudo Genes (incomplete)         :: 8 of 22 Pseudo Genes (internal stop)      :: 1 of 22 Pseudo Genes (multiple problems)  :: 2 of 22 CRISPR Arrays                     :: 7 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002792.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22 Pseudo Genes (incomplete)         :: 8 of 22 Pseudo Genes (internal stop)      :: 1 of 22 Pseudo Genes (multiple problems)  :: 2 of 22 CRISPR Arrays                     :: 7 ##Genome-Annotation-Data-END## COMPLETENESS: full length.
NC_015632.1	REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002793.1.REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William WhitmanREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu)REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: JapanREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh waterREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, LithotrophREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: AnaerobeREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: YesREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at theREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough JapanREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shapedREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: ThermophileREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75CREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram-REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22 Pseudo Genes (incomplete)         :: 8 of 22REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22 Pseudo Genes (incomplete)         :: 8 of 22 Pseudo Genes (internal stop)      :: 1 of 22REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22 Pseudo Genes (incomplete)         :: 8 of 22 Pseudo Genes (internal stop)      :: 1 of 22 Pseudo Genes (multiple problems)  :: 2 of 22REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22 Pseudo Genes (incomplete)         :: 8 of 22 Pseudo Genes (internal stop)      :: 1 of 22 Pseudo Genes (multiple problems)  :: 2 of 22 CRISPR Arrays                     :: 7REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22 Pseudo Genes (incomplete)         :: 8 of 22 Pseudo Genes (internal stop)      :: 1 of 22 Pseudo Genes (multiple problems)  :: 2 of 22 CRISPR Arrays                     :: 7 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002793.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086330 Source DNA and organism available from William Whitman (whitman@uga.edu) Contacts: William Whitman (whitman@uga.edu)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Methanothermococcus okinawensis IH1 collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Hydrothermal vent, Deep sea, Fresh water num_replicons       :: 2 ref_biomaterial     :: JCM 11175, DSM 14208 biotic_relationship :: Free living trophic_level       :: Autotroph, Lithotroph rel_to_oxygen       :: Anaerobe isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 finishing_strategy  :: Finished GOLD Stamp ID       :: Gi02044 Type Strain         :: Yes Greengenes ID       :: 48249 Funding Program     :: DOE-CSP 2008 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Deep-sea hydrothermal vent chimney at the                        Iheya Ridge in the Okinawa Trough Japan Cell Shape          :: Coccus-shaped Motility            :: Motile Temperature Range   :: Thermophile Temperature Optimum :: 40 - 75C pH                  :: 4.5 - 8.5 Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 02/15/2024 02:10:43 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,703 CDSs (total)                      :: 1,656 Genes (coding)                    :: 1,634 CDSs (with protein)               :: 1,634 Genes (RNA)                       :: 47 rRNAs                             :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S) tRNAs                             :: 38 ncRNAs                            :: 2 Pseudo Genes (total)              :: 22 CDSs (without protein)            :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted)       :: 15 of 22 Pseudo Genes (incomplete)         :: 8 of 22 Pseudo Genes (internal stop)      :: 1 of 22 Pseudo Genes (multiple problems)  :: 2 of 22 CRISPR Arrays                     :: 7 ##Genome-Annotation-Data-END## COMPLETENESS: full length.