-- dump date 20140619_144108 -- class Genbank::CDS -- table cds_note -- id note YP_001767023.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_001767024.1 binds the polymerase to DNA and acts as a sliding clamp YP_001767025.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: mex:Mext_0003 DNA replication and repair protein RecF YP_001767026.1 KEGG: mex:Mext_0006 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases YP_001767027.1 KEGG: mex:Mext_0011 phosphoribosylformylglycinamidine synthase II; TIGRFAM: phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_001767028.1 PFAM: BolA family protein; KEGG: mex:Mext_0012 BolA family protein YP_001767029.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: mex:Mext_0013 glutaredoxin-like protein YP_001767030.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mex:Mext_0014 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001767032.1 KEGG: mex:Mext_0017 hypothetical protein YP_001767033.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: mex:Mext_0413 peptidyl-dipeptidase DCP YP_001767034.1 PFAM: Extensin family protein; KEGG: mex:Mext_0412 extensin family protein YP_001767035.1 PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: mex:Mext_0411 ErfK/YbiS/YcfS/YnhG family protein YP_001767036.1 KEGG: syw:SYNW2120 hypothetical protein YP_001767037.1 KEGG: swi:Swit_3963 phytanoyl-CoA dioxygenase YP_001767038.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_0410 binding-protein-dependent transport systems inner membrane component YP_001767039.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_0409 binding-protein-dependent transport systems inner membrane component YP_001767040.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: mex:Mext_0408 substrate-binding region of ABC-type glycine betaine transport system YP_001767041.1 PFAM: response regulator receiver; KEGG: mex:Mext_0407 response regulator receiver YP_001767043.1 PFAM: protein of unknown function UPF0102; KEGG: mex:Mext_0406 protein of unknown function UPF0102 YP_001767044.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mex:Mext_0405 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase YP_001767045.1 KEGG: mex:Mext_0404 extracellular ligand-binding receptor YP_001767046.1 KEGG: mex:Mext_0403 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001767047.1 PFAM: protein of unknown function UPF0153; KEGG: rpe:RPE_3812 protein of unknown function UPF0153 YP_001767048.1 KEGG: mex:Mext_1186 conserved hypothetical protein; putative signal peptide YP_001767049.1 PFAM: thioesterase superfamily protein; KEGG: mex:Mext_2575 thioesterase superfamily protein YP_001767051.1 PFAM: peptidase C14 caspase catalytic subunit p20; SH3 type 3 domain protein; KEGG: rsp:RSP_4069 caspase-1, P20 YP_001767052.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_001767053.1 KEGG: mex:Mext_3196 RelA/SpoT family protein; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region YP_001767054.1 TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: mex:Mext_3194 orotate phosphoribosyltransferase YP_001767055.1 PFAM: protein of unknown function DUF88; KEGG: mex:Mext_3193 protein of unknown function DUF88 YP_001767056.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: mex:Mext_2034 NAD-dependent epimerase/dehydratase YP_001767057.1 PFAM: glycosyl transferase family 4; KEGG: mex:Mext_2033 glycosyl transferase family 4 YP_001767058.1 KEGG: mex:Mext_0290 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein YP_001767059.1 TIGRFAM: crotonyl-CoA reductase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mex:Mext_0288 crotonyl-CoA reductase YP_001767060.1 PFAM: DoxX family protein; KEGG: mex:Mext_0428 DoxX family protein YP_001767061.1 SMART: regulatory protein LuxR; KEGG: mes:Meso_3054 transcriptional regulator, LuxR family YP_001767062.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_001767063.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: mex:Mext_4736 lytic murein transglycosylase YP_001767064.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: mex:Mext_3063 diguanylate cyclase YP_001767065.1 PFAM: major facilitator superfamily MFS_1; KEGG: pap:PSPA7_3647 probable MFS transporter YP_001767066.1 molecular chaperone YP_001767067.1 3'-5' exonuclease of DNA polymerase III YP_001767068.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: bja:blr4116 hypothetical protein YP_001767069.1 PFAM: MaoC domain protein dehydratase; KEGG: reh:H16_B1770 hypothetical protein YP_001767070.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: mex:Mext_3795 MATE efflux family protein YP_001767071.1 PFAM: regulatory protein MarR; KEGG: mlo:mlr2509 probable transcriptional regulator YP_001767072.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: nwi:Nwi_3027 major facilitator superfamily MFS_1 YP_001767073.1 PFAM: aminotransferase class IV; KEGG: mex:Mext_3905 aminotransferase class IV YP_001767074.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: mex:Mext_3906 glutamine amidotransferase of anthranilate synthase YP_001767075.1 KEGG: mex:Mext_3907 para-aminobenzoate synthase, subunit I; TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like YP_001767076.1 KEGG: azc:AZC_1950 putative periplasmic substrate-binding transmembrane protein YP_001767077.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bra:BRADO1410 putative ABC transporter; permease protein YP_001767078.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbt:BBta_6692 putative ABC transporter (ATP binding subunit) YP_001767079.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bra:BRADO1408 putative two-component response regulator (OmpR family) YP_001767080.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: azc:AZC_1954 ATP-binding protein YP_001767081.1 PFAM: extracellular solute-binding protein family 1; KEGG: hch:HCH_01635 ABC-type Fe3+ transport system, periplasmic component YP_001767082.1 PFAM: PEBP family protein; KEGG: smd:Smed_4277 PEBP family protein YP_001767083.1 PFAM: Erythromycin esterase; KEGG: mes:Meso_3528 erythromycin esterase YP_001767084.1 PFAM: phospholipase/Carboxylesterase; KEGG: dra:DR_0657 serine esterase, putative YP_001767085.1 KEGG: mex:Mext_1230 hypothetical protein YP_001767086.1 PFAM: ROSMUCR transcriptional regulator; KEGG: xau:Xaut_1838 transcriptional regulator, MucR family YP_001767089.1 KEGG: bja:bll5531 hypothetical protein YP_001767090.1 PFAM: amino acid permease-associated region; KEGG: bja:bll5532 hypothetical protein YP_001767091.1 KEGG: bja:blr5533 hypothetical protein YP_001767092.1 PFAM: conserved hypothetical protein; KEGG: acr:Acry_0767 conserved hypothetical protein 245 YP_001767093.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: acr:Acry_0768 ABC transporter related YP_001767094.1 KEGG: mex:Mext_0020 hypothetical protein YP_001767096.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: mlo:mll1719 hypothetical protein YP_001767097.1 KEGG: esa:ESA_01819 hypothetical protein YP_001767098.1 PFAM: UspA domain protein; KEGG: mag:amb1529 universal stress protein UspA and related nucleotide-binding protein YP_001767099.1 PFAM: ABC-2 type transporter; KEGG: bbt:BBta_7848 putative ABC transporter (permease protein) YP_001767100.1 PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: bra:BRADO7121 putative ABC transporter (protein fusion consisting of two ATP-binding domains and permease) YP_001767101.1 PFAM: secretion protein HlyD family protein; KEGG: bra:BRADO7122 putative HlyD-family secretion protein YP_001767103.1 KEGG: eba:ebA6212 PHA synthase subunit PhaC YP_001767104.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: xac:XAC3744 ATP binding transporter 1 YP_001767105.1 KEGG: psa:PST_2889 beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase YP_001767106.1 KEGG: psa:PST_2891 glycosyltransferase YP_001767107.1 KEGG: dge:Dgeo_2530 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like YP_001767108.1 KEGG: afw:Anae109_3225 glycoside hydrolase family 5 YP_001767109.1 PFAM: cyclic nucleotide-binding; KEGG: syw:SYNW2108 hypothetical protein YP_001767110.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ava:Ava_1128 ABC transporter, transmembrane region YP_001767111.1 PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: pth:PTH_2380 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain YP_001767112.1 KEGG: pth:PTH_2381 membrane-fusion protein YP_001767114.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pde:Pden_4198 radical SAM domain protein YP_001767116.1 KEGG: saq:Sare_4565 hypothetical protein YP_001767117.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rca:Rcas_2450 radical SAM domain protein YP_001767119.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rca:Rcas_2450 radical SAM domain protein YP_001767120.1 KEGG: scl:sce8752 uncharacterized conserved protein YP_001767121.1 KEGG: fal:FRAAL6342 putative protein; putative signal peptide; putative O-methyltransferase YP_001767122.1 KEGG: scl:sce9070 hypothetical protein YP_001767123.1 KEGG: mex:Mext_1370 hypothetical protein YP_001767124.1 PFAM: glycoside hydrolase family 8; KEGG: mex:Mext_1369 cellulase YP_001767125.1 KEGG: mex:Mext_1368 hypothetical protein YP_001767126.1 KEGG: mex:Mext_1367 cellulose synthase catalytic subunit (UDP-forming); TIGRFAM: cellulose synthase catalytic subunit (UDP-forming); PFAM: glycosyl transferase family 2 YP_001767127.1 KEGG: mex:Mext_1366 hypothetical protein YP_001767128.1 PFAM: response regulator receiver; histidine kinase A domain protein; KEGG: mex:Mext_1365 response regulator receiver YP_001767129.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mex:Mext_2307 alcohol dehydrogenase GroES domain protein YP_001767130.1 KEGG: mex:Mext_2308 hypothetical protein YP_001767131.1 KEGG: sus:Acid_0874 hypothetical protein YP_001767132.1 PFAM: MmgE/PrpD family protein; KEGG: ppr:PBPRB0047 hypothetical protein YP_001767133.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azc:AZC_1839 polar amino acid uptake family ABC transporter ATP-binding protein YP_001767134.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_1838 polar amino acid uptake family ABC transporter permease protein 2 YP_001767135.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_1837 polar amino acid uptake family ABC transporter permease protein 1 YP_001767136.1 PFAM: extracellular solute-binding protein family 3; KEGG: azc:AZC_1836 polar amino acid uptake family ABC transporter periplasmic substrate-binding protein YP_001767137.1 catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids YP_001767138.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB0088 LysR family regulatory protein YP_001767141.1 PFAM: Hemolysin-type calcium-binding region; KEGG: bja:bll3109 putative Ca binding protein YP_001767143.1 PFAM: aminoglycoside phosphotransferase; KEGG: sal:Sala_1765 aminoglycoside phosphotransferase YP_001767144.1 PFAM: enolase; KEGG: vei:Veis_2870 phosphopyruvate hydratase YP_001767145.1 KEGG: fra:Francci3_2783 hypothetical protein YP_001767146.1 PFAM: Rhodanese domain protein; KEGG: xau:Xaut_2891 rhodanese domain protein YP_001767147.1 PFAM: beta-lactamase domain protein; KEGG: xau:Xaut_2892 beta-lactamase domain protein YP_001767148.1 PFAM: protein of unknown function DUF81; KEGG: xau:Xaut_2893 protein of unknown function DUF81 YP_001767149.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: mex:Mext_1142 protein of unknown function DUF395 YeeE/YedE YP_001767150.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: mex:Mext_1143 protein of unknown function DUF395 YeeE/YedE YP_001767151.1 KEGG: sme:SMa1058 hypothetical protein YP_001767152.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpc:RPC_4909 ErfK/YbiS/YcfS/YnhG YP_001767153.1 PFAM: DSBA oxidoreductase; KEGG: rpb:RPB_4361 DsbA oxidoreductase YP_001767154.1 PFAM: cytochrome c biogenesis protein transmembrane region; Thioredoxin domain; KEGG: rpc:RPC_4907 cytochrome c biogenesis protein, transmembrane region YP_001767155.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpc:RPC_4906 two component transcriptional regulator, winged helix family YP_001767156.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rpd:RPD_4242 ATP-binding region, ATPase-like YP_001767157.1 PFAM: protein of unknown function DUF336; KEGG: nha:Nham_3668 protein of unknown function DUF336 YP_001767158.1 PFAM: Domain of unknown function DUF1791; KEGG: rpa:RPA4476 hypothetical protein YP_001767159.1 PFAM: Domain of unknown function DUF1791; KEGG: nha:Nham_3670 hypothetical protein YP_001767160.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: nha:Nham_3671 twin-arginine translocation pathway signal YP_001767161.1 KEGG: bja:bll1010 hypothetical protein between SoxB and SoxA [Chlorobium tepidum TLS] YP_001767162.1 KEGG: nha:Nham_3673 sulfur oxidation protein YP_001767163.1 PFAM: Sulphur oxidation protein SoxZ; KEGG: nha:Nham_3674 sulfur oxidation protein YP_001767164.1 KEGG: bbt:BBta_0696 putative exported protein of unknown function with sulfur oxidation protein precursor SoxY domain YP_001767165.1 PFAM: cytochrome c class I; KEGG: bja:bll1014 sulfur oxidation protein YP_001767166.1 KEGG: acr:Acry_3042 cytochrome c, class I YP_001767167.1 PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: acr:Acry_3041 oxidoreductase, molybdopterin binding YP_001767168.1 PFAM: regulatory protein ArsR; KEGG: ajs:Ajs_3418 transcriptional regulator, TrmB YP_001767169.1 PFAM: beta-lactamase domain protein; KEGG: ade:Adeh_2278 beta-lactamase-like YP_001767170.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: bja:bll3505 hypothetical protein YP_001767171.1 PFAM: Calcium-binding EF-hand-containing protein; KEGG: rle:RL1893 putative transmembrane protein YP_001767172.1 KEGG: rpc:RPC_3041 transcriptional regulator, AraC family YP_001767173.1 KEGG: mes:Meso_0337 major facilitator superfamily MFS_1 YP_001767174.1 KEGG: rpc:RPC_3030 hypothetical protein YP_001767175.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pde:Pden_1425 ABC transporter related YP_001767176.1 PFAM: Thioesterase; KEGG: rpc:RPC_3033 thioesterase YP_001767178.1 PFAM: secretion protein HlyD family protein; KEGG: mca:MCA1810 hypothetical protein YP_001767179.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eli:ELI_11040 ABC transporter, ATP-binding protein YP_001767180.1 PFAM: protein of unknown function DUF214; KEGG: mca:MCA1808 ABC-transporter permease protein, putative YP_001767181.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: gvi:gll1951 phosphopantetheinyltransferase family protein YP_001767182.1 PFAM: Thioesterase; KEGG: xau:Xaut_1005 oleoyl-(acyl-carrier-protein) hydrolase YP_001767183.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; KEGG: sen:SACE_2630 modular polyketide synthase YP_001767184.1 PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: gsu:GSU1103 acyl-CoA synthetase YP_001767185.1 PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; KEGG: sen:SACE_2875 modular polyketide synthase- YP_001767186.1 KEGG: azo:azo0293 probable dialkylrecorsinol condensing enzyme YP_001767187.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; this condensing enzyme differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_001767188.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: ava:Ava_3988 phenylalanine/histidine ammonia-lyase YP_001767189.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; KEGG: oan:Oant_3233 heavy metal translocating P-type ATPase YP_001767190.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: bpt:Bpet2542 transcriptional regulator, MerR family YP_001767191.1 PFAM: protein of unknown function DUF305; KEGG: pde:Pden_0926 protein of unknown function DUF305 YP_001767192.1 KEGG: xau:Xaut_3407 hypothetical protein YP_001767193.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: mex:Mext_2831 acriflavin resistance protein YP_001767194.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: mex:Mext_2832 efflux transporter, RND family, MFP subunit YP_001767195.1 PFAM: response regulator receiver; KEGG: bja:bsr2863 two-component response regulator YP_001767196.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bja:bll3106 two-component sensor histidine kinase YP_001767198.1 PFAM: Integrase catalytic region; KEGG: rso:RSp0548 ISRSO8-transposase orfB protein YP_001767199.1 PFAM: transposase mutator type; KEGG: rpc:RPC_3939 transposase, mutator type YP_001767200.1 PFAM: glycosyl transferase group 1; KEGG: azc:AZC_0051 putative glycosyltransferase YP_001767201.1 PFAM: glycosyl transferase group 1; KEGG: azc:AZC_0050 putative glycosyltransferase YP_001767202.1 KEGG: jan:Jann_1557 hypothetical protein YP_001767204.1 KEGG: azc:AZC_0734 hypothetical protein YP_001767205.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_001767208.1 PFAM: AMP-dependent synthetase and ligase; KEGG: mex:Mext_3653 AMP-dependent synthetase and ligase YP_001767209.1 KEGG: mex:Mext_3652 hypothetical protein YP_001767212.1 KEGG: ecx:EcHS_A2080 hypothetical protein YP_001767215.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: azc:AZC_3540 putative sensory box/GGDEF family protein YP_001767217.1 KEGG: rpc:RPC_0317 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001767218.1 KEGG: mex:Mext_4428 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001767219.1 KEGG: mex:Mext_1026 hypothetical protein YP_001767220.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: mex:Mext_2384 hypothetical protein YP_001767221.1 PFAM: Glutathione S-transferase domain; KEGG: mex:Mext_2386 glutathione S-transferase domain YP_001767222.1 KEGG: mex:Mext_2387 undecaprenol kinase; TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA YP_001767223.1 PFAM: TfoX domain protein; KEGG: rle:RL2596 putative TfoX family protein YP_001767224.1 PFAM: methylmalonyl-CoA mutase; KEGG: mex:Mext_2388 methylmalonyl-CoA mutase YP_001767225.1 KEGG: mex:Mext_2389 hypothetical protein YP_001767226.1 KEGG: mex:Mext_2390 hypothetical protein YP_001767227.1 KEGG: mex:Mext_3511 hypothetical protein YP_001767228.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_001767229.1 PFAM: FAD dependent oxidoreductase; KEGG: mex:Mext_2610 FAD dependent oxidoreductase YP_001767230.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_001767231.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mex:Mext_1239 pyridoxamine 5'-phosphate oxidase-related FMN-binding YP_001767232.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mex:Mext_1238 response regulator receiver YP_001767233.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: mex:Mext_1237 ATP-binding region ATPase domain protein YP_001767234.1 PFAM: PTS system fructose subfamily IIA component; KEGG: mex:Mext_1235 PTS system fructose subfamily IIA component YP_001767235.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: mex:Mext_1234 phosphocarrier, HPr family YP_001767237.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: mex:Mext_1219 cobalamin synthesis protein P47K YP_001767238.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rpb:RPB_1750 acyl-CoA dehydrogenase-like YP_001767239.1 TIGRFAM: pimeloyl-CoA dehydrogenase, large subunit; PFAM: acyl-CoA dehydrogenase domain protein; KEGG: acr:Acry_0253 acyl-CoA dehydrogenase domain protein YP_001767240.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: ccr:CC_3189 fatty oxidation complex, alpha subunit YP_001767241.1 KEGG: vei:Veis_4960 acetyl-CoA acetyltransferases; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase YP_001767242.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpd:RPD_3206 short-chain dehydrogenase/reductase SDR YP_001767243.1 PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_B1239 long-chain-fatty-acid--CoA ligase YP_001767244.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: mex:Mext_4866 acetolactate synthase, small subunit YP_001767245.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: mex:Mext_4864 acetolactate synthase, large subunit, biosynthetic type YP_001767246.1 PFAM: CheW domain protein; KEGG: mex:Mext_2835 CheW domain protein YP_001767247.1 PFAM: MCP methyltransferase CheR-type; KEGG: mex:Mext_2836 protein-glutamate O-methyltransferase YP_001767248.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mex:Mext_2838 chemotaxis sensory transducer YP_001767249.1 PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: mex:Mext_2839 response regulator receiver YP_001767250.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: mex:Mext_2840 protein-glutamate methylesterase YP_001767251.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mex:Mext_2841 ATP-binding region ATPase domain protein YP_001767252.1 KEGG: mex:Mext_2842 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001767253.1 PFAM: adenylylsulfate kinase; KEGG: rru:Rru_A2290 sulfate adenylyltransferase, large subunit YP_001767254.1 KEGG: mex:Mext_4632 hypothetical protein YP_001767255.1 KEGG: mex:Mext_4633 hypothetical protein YP_001767256.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: mlo:mll1618 methionine gamma-lyase YP_001767258.1 KEGG: sye:Syncc9902_2182 capsular polysaccharide biosynthesis protein-like YP_001767259.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: mex:Mext_4634 sodium/hydrogen exchanger YP_001767260.1 KEGG: mex:Mext_0674 conserved hypothetical protein; putative deoxyribonuclease YP_001767261.1 heat shock protein involved in degradation of misfolded proteins YP_001767262.1 heat shock protein involved in degradation of misfolded proteins YP_001767263.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_001767264.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: mex:Mext_4637 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase YP_001767265.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: mex:Mext_4638 UDP-N-acetylmuramyl-tripeptide synthetase YP_001767266.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: mex:Mext_4639 peptidoglycan glycosyltransferase YP_001767267.1 KEGG: mex:Mext_4640 putative exported protein of unknown function YP_001767268.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: mex:Mext_4641 S-adenosyl-methyltransferase MraW YP_001767269.1 KEGG: mex:Mext_0439 hypothetical protein YP_001767270.1 PFAM: sodium/calcium exchanger membrane region; KEGG: aba:Acid345_4437 sodium/calcium antiporter YP_001767271.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mex:Mext_0440 glyoxalase/bleomycin resistance protein/dioxygenase YP_001767272.1 TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: mex:Mext_0542 aminopeptidase N YP_001767273.1 KEGG: mex:Mext_0543 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001767274.1 PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: mex:Mext_0326 (glutamate--ammonia-ligase) adenylyltransferase YP_001767275.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: bja:bll0240 transcriptional regulatory protein YP_001767276.1 catalyzes conversion of 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketobutyrate YP_001767277.1 PFAM: chemotaxis sensory transducer; KEGG: mag:amb1217 methyl-accepting chemotaxis protein YP_001767278.1 PFAM: Rhodanese domain protein; KEGG: gsu:GSU2516 rhodanese-like domain protein YP_001767279.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: mex:Mext_0328 ATP-binding region ATPase domain protein YP_001767280.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mex:Mext_0329 response regulator receiver YP_001767281.1 PFAM: ROSMUCR transcriptional regulator; KEGG: mex:Mext_4474 ROSMUCR transcriptional regulator YP_001767284.1 PFAM: response regulator receiver; KEGG: mex:Mext_4845 response regulator receiver YP_001767285.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: mex:Mext_4843 peptidoglycan-associated lipoprotein YP_001767286.1 TIGRFAM: tol-pal system protein YbgF; KEGG: mex:Mext_4842 tol-pal system protein YbgF YP_001767287.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: mex:Mext_4841 tRNA(Ile)-lysidine synthetase YP_001767288.1 KEGG: mex:Mext_4840 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001767290.1 TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; KEGG: mex:Mext_1267 septum site-determining protein MinC YP_001767291.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: mex:Mext_1268 septum site-determining protein MinD YP_001767292.1 TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; KEGG: mes:Meso_0321 cell division topological specificity factor MinE YP_001767293.1 KEGG: olu:OSTLU_25682 predicted protein YP_001767294.1 PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: mex:Mext_1971 Na+ dependent nucleoside transporter domain protein YP_001767295.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: rpc:RPC_3182 peptidase C14, caspase catalytic subunit P20 YP_001767296.1 KEGG: mex:Mext_2601 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase YP_001767297.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: sme:SMa2349 probable oxidoreductase YP_001767298.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: aav:Aave_1486 molybdopterin dehydrogenase, FAD-binding YP_001767299.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bra:BRADO2884 putative xanthine dehydrogenase, molybdenum binding subunit YP_001767300.1 Catalyzes the rate-limiting step in dNTP synthesis YP_001767301.1 PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit; KEGG: mex:Mext_1101 NADH:ubiquinone oxidoreductase 17.2 kD subunit YP_001767302.1 KEGG: mex:Mext_1100 conserved hypothetical proteinn YP_001767303.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; KEGG: mex:Mext_4873 histidine kinase dimerisation/phosphoacceptor YP_001767304.1 PFAM: response regulator receiver; KEGG: mex:Mext_4874 response regulator receiver YP_001767305.1 KEGG: mex:Mext_4875 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein YP_001767308.1 KEGG: mex:Mext_3988 hypothetical protein YP_001767309.1 KEGG: azc:AZC_0717 putative invasion protein B YP_001767310.1 PFAM: SapC family protein; KEGG: saz:Sama_0940 hypothetical protein YP_001767313.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B1065 TPR repeat protein YP_001767315.1 SMART: metal-dependent phosphohydrolase HD region; KEGG: rpb:RPB_1323 hypothetical protein YP_001767316.1 TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: xau:Xaut_0463 cytochrome c oxidase cbb3 type accessory protein FixG YP_001767317.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: rxy:Rxyl_1617 protein of unknown function DUF395, YeeE/YedE YP_001767318.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: mex:Mext_1143 protein of unknown function DUF395 YeeE/YedE YP_001767320.1 PFAM: glycosyl transferase family 2; KEGG: mex:Mext_1949 glycosyl transferase family 2 YP_001767321.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: xau:Xaut_4452 putative transcriptional regulator, AsnC family YP_001767322.1 PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; KEGG: mex:Mext_1947 beta-ketoacyl synthase YP_001767323.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aminotransferase class I and II; aminotransferase class-III; KEGG: mex:Mext_1946 8-amino-7-oxononanoate synthase YP_001767324.1 PFAM: formyl transferase domain protein; KEGG: mex:Mext_2540 formyl transferase domain protein YP_001767325.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mex:Mext_2539 short-chain dehydrogenase/reductase SDR YP_001767326.1 PFAM: Capsule polysaccharide biosynthesis protein; KEGG: dvl:Dvul_2595 capsule polysaccharide biosynthesis YP_001767327.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: swi:Swit_3963 phytanoyl-CoA dioxygenase YP_001767328.1 PFAM: Capsule polysaccharide biosynthesis protein; KEGG: sme:SMc02269 capsular polysaccharide biosynthesis/export protein YP_001767329.1 PFAM: polysaccharide export protein; KEGG: mex:Mext_2535 polysaccharide export protein YP_001767330.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sen:SACE_1944 D-isomer specific 2-hydroxyacid dehydrogenase family protein YP_001767331.1 PFAM: Extracellular ligand-binding receptor; KEGG: mex:Mext_2534 extracellular ligand-binding receptor YP_001767332.1 KEGG: mex:Mext_0675 aspartate aminotransferase YP_001767333.1 is a component of the macrolide binding site in the peptidyl transferase center YP_001767334.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_001767335.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_001767336.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_001767337.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_001767338.1 TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: mex:Mext_2181 preprotein translocase, SecY subunit YP_001767339.1 late assembly protein YP_001767340.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_001767341.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_001767342.1 binds 5S rRNA along with protein L5 and L25 YP_001767343.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_001767344.1 PFAM: ribosomal protein S8; KEGG: mex:Mext_2187 ribosomal protein S8 YP_001767345.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_001767346.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_001767347.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_001767348.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_001767349.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_001767350.1 PFAM: ribosomal protein L29; KEGG: mex:Mext_2170 ribosomal protein L29 YP_001767351.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_001767352.1 KEGG: mex:Mext_2168 ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein YP_001767353.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_001767354.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_001767355.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_001767356.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_001767357.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_001767358.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_001767359.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_001767360.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001767361.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001767362.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_001767363.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_001767364.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_001767365.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_001767366.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_001767367.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_001767368.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: azc:AZC_0726 histidine kinase YP_001767369.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mex:Mext_4012 radical SAM domain protein YP_001767370.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_001767371.1 binds directly to 23S ribosomal RNA YP_001767372.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: KOW domain protein; NGN domain protein; KEGG: mex:Mext_3997 transcription termination/antitermination factor NusG YP_001767373.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: mex:Mext_3996 preprotein translocase, SecE subunit YP_001767374.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mex:Mext_2555 chemotaxis sensory transducer YP_001767375.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001767376.1 PFAM: acylphosphatase; KEGG: mex:Mext_2998 acylphosphatase YP_001767377.1 PFAM: protein of unknown function DUF599; KEGG: mex:Mext_2999 protein of unknown function DUF599 YP_001767378.1 KEGG: mex:Mext_3000 hypothetical protein YP_001767379.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: mes:Meso_3140 dimethylmenaquinone methyltransferase YP_001767380.1 PFAM: Glutathione S-transferase domain; KEGG: mex:Mext_3002 glutathione S-transferase domain YP_001767381.1 KEGG: mex:Mext_3003 lysine 2,3-aminomutase YodO family protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein YP_001767382.1 PFAM: tRNA synthetase class II (D K and N); KEGG: mlo:mlr8260 lysyl-tRNA synthetase YP_001767383.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_001767384.1 PFAM: protein of unknown function DUF1624; KEGG: mex:Mext_3006 protein of unknown function DUF1624 YP_001767385.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: mex:Mext_3007 cold-shock protein DNA-binding YP_001767386.1 PFAM: protein of unknown function DUF192; KEGG: mex:Mext_3008 protein of unknown function DUF192 YP_001767387.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mex:Mext_3147 chemotaxis sensory transducer YP_001767388.1 PFAM: AIG2 family protein; KEGG: mex:Mext_2997 AIG2 family protein YP_001767389.1 PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: mex:Mext_2996 carbamoyl-phosphate synthase L chain ATP-binding YP_001767390.1 KEGG: mex:Mext_2995 hypothetical protein YP_001767391.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bja:blr4219 hypothetical protein YP_001767392.1 PFAM: histone deacetylase superfamily; KEGG: mex:Mext_2993 histone deacetylase superfamily YP_001767393.1 PFAM: Auxin Efflux Carrier; KEGG: rso:RSc1095 probable transmembrane protein YP_001767394.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: mex:Mext_2991 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_001767395.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_001767396.1 TIGRFAM: ribonuclease, Rne/Rng family; KEGG: mex:Mext_3659 ribonuclease, Rne/Rng family YP_001767397.1 PFAM: chemotaxis sensory transducer; KEGG: mex:Mext_2643 chemotaxis sensory transducer YP_001767398.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: gbe:GbCGDNIH1_1637 transcriptional regulators, LysR family YP_001767399.1 PFAM: NMT1/THI5 like domain protein; KEGG: rpb:RPB_2838 twin-arginine translocation pathway signal YP_001767400.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA2678 putative permease protein, subunit of ABC transporter YP_001767401.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mms:mma_3084 sulfonate/nitrate transport system ATP-binding protein YP_001767402.1 PFAM: polysaccharide deacetylase; KEGG: jan:Jann_2944 polysaccharide deacetylase YP_001767403.1 KEGG: rpb:RPB_2835 hypothetical protein YP_001767404.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: mex:Mext_1393 peptidoglycan-binding domain 1 protein YP_001767405.1 PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; SMART: Tetratricopeptide domain protein; KEGG: mex:Mext_1395 alpha-2-macroglobulin domain protein YP_001767406.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rpb:RPB_0527 transcriptional regulator, LysR family YP_001767407.1 PFAM: aldo/keto reductase; KEGG: bpt:Bpet4198 aldo/keto reductase YP_001767408.1 TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; KEGG: mex:Mext_1396 penicillin-binding protein 1C YP_001767409.1 KEGG: mex:Mext_4848 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase YP_001767411.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rpd:RPD_2710 antibiotic biosynthesis monooxygenase YP_001767412.1 KEGG: mex:Mext_4553 hypothetical protein YP_001767413.1 PFAM: heat shock protein Hsp20; KEGG: mex:Mext_4556 heat shock protein HSP20 YP_001767414.1 PFAM: alpha/beta hydrolase fold; KEGG: mex:Mext_4557 alpha/beta hydrolase fold YP_001767415.1 TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase; KEGG: mex:Mext_4559 histidinol-phosphate phosphatase YP_001767416.1 PFAM: protein of unknown function UPF0118; KEGG: mex:Mext_4560 protein of unknown function UPF0118 YP_001767417.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate YP_001767418.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mex:Mext_4563 pyridoxamine 5'-phosphate oxidase-related FMN-binding YP_001767419.1 PFAM: TOBE domain protein; KEGG: rpb:RPB_0855 molybdenum-pterin binding protein YP_001767420.1 PFAM: periplasmic binding protein; KEGG: mex:Mext_3842 periplasmic binding protein YP_001767421.1 PFAM: transport system permease protein; KEGG: mex:Mext_3843 transport system permease protein YP_001767422.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_001767423.1 TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; KEGG: bja:bsl5728 phosphoribosylformylglycinamidine synthase subunit PurS YP_001767424.1 KEGG: psa:PST_3480 acetyltransferase, CysE/LacA/LpxA/NodL family YP_001767425.1 PFAM: protein of unknown function DUF1206; KEGG: mex:Mext_2038 protein of unknown function DUF1206 YP_001767426.1 PFAM: protein of unknown function DUF533; KEGG: smd:Smed_2778 protein of unknown function DUF533 YP_001767427.1 KEGG: mex:Mext_3952 hypothetical protein YP_001767428.1 PFAM: acriflavin resistance protein; KEGG: mex:Mext_3922 acriflavin resistance protein YP_001767429.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mex:Mext_3921 efflux transporter, RND family, MFP subunit YP_001767430.1 PFAM: regulatory protein TetR; KEGG: mex:Mext_0395 regulatory protein TetR YP_001767431.1 KEGG: mex:Mext_3920 hypothetical protein YP_001767432.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: esa:ESA_02350 hypothetical protein YP_001767433.1 KEGG: spe:Spro_2928 hypothetical protein YP_001767434.1 PFAM: iron permease FTR1; KEGG: oan:Oant_3859 iron permease FTR1 YP_001767435.1 PFAM: ABC transporter related; KEGG: mex:Mext_0815 ABC transporter related YP_001767436.1 KEGG: mex:Mext_0816 capsule polysaccharide export protein-like protein YP_001767437.1 KEGG: mex:Mext_3137 hypothetical protein YP_001767438.1 PFAM: ETC complex I subunit conserved region; KEGG: mex:Mext_3134 ETC complex I subunit conserved region YP_001767439.1 KEGG: mex:Mext_3811 hypothetical protein YP_001767440.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: nha:Nham_2368 methyltransferase type 12 YP_001767441.1 PFAM: Glutathione S-transferase domain; KEGG: mex:Mext_3132 glutathione S-transferase domain YP_001767442.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mex:Mext_2047 GCN5-related N-acetyltransferase YP_001767443.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan YP_001767444.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mex:Mext_2045 Orn/DAP/Arg decarboxylase 2 YP_001767445.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mex:Mext_2044 GCN5-related N-acetyltransferase YP_001767449.1 PFAM: homospermidine synthase; KEGG: mex:Mext_2042 homospermidine synthase YP_001767450.1 PFAM: protein of unknown function DUF820; KEGG: mex:Mext_2040 protein of unknown function DUF820 YP_001767451.1 KEGG: mex:Mext_2039 hypothetical protein YP_001767452.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_001767453.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: mex:Mext_2037 polysaccharide biosynthesis protein CapD YP_001767454.1 KEGG: mex:Mext_4748 hypothetical protein YP_001767455.1 PFAM: CreA family protein; KEGG: mex:Mext_4747 CreA family protein YP_001767456.1 KEGG: mex:Mext_4746 hypothetical protein YP_001767457.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_001767458.1 PFAM: conserved hypothetical protein; KEGG: mex:Mext_4743 hypothetical protein YP_001767459.1 PFAM: Peptidoglycan-binding LysM; KEGG: mex:Mext_4742 peptidoglycan-binding LysM YP_001767460.1 PFAM: Asp/Glu/hydantoin racemase; KEGG: rme:Rmet_3887 Asp/Glu racemase YP_001767461.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr3293 ABC transporter ATP-binding protein YP_001767462.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr3292 ABC transporter permease protein YP_001767463.1 KEGG: bja:blr3291 ABC transporter substrate-binding protein YP_001767464.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bja:bll3290 transcriptional regulatory protein YP_001767465.1 PFAM: Asp/Glu/hydantoin racemase; KEGG: reh:H16_A3073 hydantoin racemase YP_001767466.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: smd:Smed_1693 transferase hexapeptide repeat containing protein YP_001767467.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate YP_001767468.1 KEGG: mex:Mext_4062 hypothetical protein YP_001767469.1 KEGG: mex:Mext_4061 hypothetical protein YP_001767470.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mex:Mext_1782 PAS sensor protein YP_001767471.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: mex:Mext_4442 thioredoxin YP_001767472.1 KEGG: mex:Mext_4443 porin YP_001767473.1 TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; KEGG: mex:Mext_4444 FolC bifunctional protein YP_001767474.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: mex:Mext_4445 acetyl-CoA carboxylase, carboxyl transferase, beta subunit YP_001767475.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_001767476.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cko:CKO_02929 hypothetical protein YP_001767478.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sil:SPO1092 transcriptional regulator, LysR family YP_001767479.1 PFAM: isochorismatase hydrolase; KEGG: bbt:BBta_5288 hypothetical protein YP_001767480.1 KEGG: ppu:PP_3487 hypothetical protein YP_001767481.1 PFAM: Domain of unknown function DUF1929; KEGG: mex:Mext_1210 galactose oxidase YP_001767482.1 KEGG: mex:Mext_2621 conserved hypothetical proteinn YP_001767483.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_001767484.1 PFAM: protein of unknown function DUF343; KEGG: mex:Mext_2253 protein of unknown function DUF343 YP_001767486.1 TIGRFAM: double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; KEGG: mex:Mext_4440 double-strand break repair helicase AddA YP_001767487.1 PFAM: cytochrome B561; KEGG: nha:Nham_3894 cytochrome b561 YP_001767488.1 TIGRFAM: double-strand break repair protein AddB; KEGG: mex:Mext_4439 double-strand break repair protein AddB YP_001767489.1 PFAM: Nucleotidyl transferase; KEGG: mex:Mext_4430 nucleotidyl transferase YP_001767490.1 PFAM: aminoglycoside phosphotransferase; protein of unknown function UPF0079; KEGG: mex:Mext_4431 protein of unknown function UPF0079 YP_001767491.1 KEGG: mex:Mext_4325 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; Amidohydrolase 3 YP_001767492.1 PFAM: sugar isomerase (SIS); KEGG: mex:Mext_4326 glutamine--fructose-6-phosphate transaminase (isomerizing) YP_001767493.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway YP_001767494.1 PFAM: extracellular solute-binding protein family 5; KEGG: azc:AZC_0023 putative oligopeptide ABC transporter YP_001767495.1 KEGG: bbt:BBta_0349 hypothetical protein YP_001767496.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_001767497.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: mex:Mext_4432 ATP-binding region ATPase domain protein YP_001767498.1 PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mex:Mext_1298 DEAD/DEAH box helicase domain protein YP_001767499.1 PFAM: Citrate transporter; TrkA-C domain protein; KEGG: sme:SMa1916 hypothetical protein YP_001767500.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mex:Mext_4518 LysR substrate-binding YP_001767501.1 KEGG: smd:Smed_5694 hypothetical protein YP_001767502.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: rpa:RPA0154 possible MotA/TolQ/ExbB proton channel family YP_001767503.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: gbe:GbCGDNIH1_1104 TolR protein YP_001767504.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: rpa:RPA0156 TonB like protein YP_001767505.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cau:Caur_1157 periplasmic binding protein/LacI transcriptional regulator YP_001767506.1 KEGG: ccr:CC_1790 hypothetical protein YP_001767507.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cvi:CV_3188 probable TonB-dependent receptor YP_001767508.1 PFAM: K potassium transporter; KEGG: mex:Mext_2282 K potassium transporter YP_001767509.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rpc:RPC_2016 transcriptional regulator, AraC family YP_001767510.1 KEGG: mex:Mext_2882 porin YP_001767511.1 PFAM: NUDIX hydrolase; KEGG: mex:Mext_0904 NUDIX hydrolase YP_001767512.1 KEGG: mex:Mext_3673 phosphohydrolase (DHH superfamily)-like protein YP_001767513.1 KEGG: osa:4332624 Os03g0309300 YP_001767514.1 PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_1916 major facilitator superfamily MFS_1 YP_001767515.1 KEGG: mex:Mext_1915 putative secreted protein YP_001767516.1 KEGG: mex:Mext_1914 transcriptional regulator, ArsR family YP_001767517.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: mex:Mext_3866 arsenical-resistance protein YP_001767518.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: mex:Mext_1910 arsenate reductase YP_001767519.1 SMART: regulatory protein ArsR; KEGG: mex:Mext_3864 regulatory protein ArsR YP_001767520.1 TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase; KEGG: mex:Mext_3863 arsenical resistance protein ArsH YP_001767521.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_1871 TRAP dicarboxylate transporter, DctP subunit YP_001767522.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpb:RPB_3545 methyl-accepting chemotaxis sensory transducer YP_001767523.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:blr6986 putative adenylate cyclase 3 YP_001767524.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bja:bll3875 hypothetical metabolite transport protein YP_001767525.1 PFAM: Aldehyde Dehydrogenase_; KEGG: bja:bll3876 aldehyde dehydrogenase YP_001767526.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bja:bll3877 transcriptional regulatory protein YP_001767527.1 PFAM: alpha/beta hydrolase fold; KEGG: bja:blr3878 putative hydrolase YP_001767529.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: ter:Tery_2417 adenylate/guanylate cyclase YP_001767530.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: bja:blr6986 putative adenylate cyclase 3 YP_001767531.1 KEGG: mex:Mext_4377 hypothetical protein YP_001767532.1 KEGG: rxy:Rxyl_2039 hypothetical protein YP_001767533.1 PFAM: rhodopsin; KEGG: rxy:Rxyl_2037 rhodopsin YP_001767534.1 PFAM: Collagen triple helix repeat; KEGG: mmu:12842 collagen, type I, alpha 1 YP_001767535.1 PFAM: protein of unknown function DUF1206; KEGG: mex:Mext_2038 protein of unknown function DUF1206 YP_001767536.1 PFAM: TPR repeat-containing protein; peptidase C14 caspase catalytic subunit p20; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pmt:PMT0296 TPR repeat YP_001767537.1 KEGG: mex:Mext_0496 hypothetical protein YP_001767538.1 PFAM: protein of unknown function DUF336; KEGG: lil:LA0341 GlcG protein YP_001767539.1 PFAM: flagellin hook IN repeat protein; KEGG: rpd:RPD_1670 hypothetical protein YP_001767541.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_1284 ABC transporter related YP_001767542.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_1285 ABC transporter related YP_001767543.1 PFAM: inner-membrane translocator; KEGG: mex:Mext_1286 inner-membrane translocator YP_001767544.1 PFAM: inner-membrane translocator; KEGG: mex:Mext_1287 inner-membrane translocator YP_001767545.1 PFAM: Extracellular ligand-binding receptor; KEGG: mex:Mext_1288 extracellular ligand-binding receptor YP_001767546.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: mex:Mext_1289 carbon-monoxide dehydrogenase (acceptor) YP_001767547.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: mex:Mext_1290 (2Fe-2S)-binding domain protein YP_001767548.1 PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: mex:Mext_1291 molybdopterin dehydrogenase FAD-binding YP_001767549.1 PFAM: regulatory protein TetR; KEGG: mex:Mext_1292 regulatory protein TetR YP_001767550.1 KEGG: mes:Meso_4140 putative transporter YP_001767551.1 PFAM: Amidase; KEGG: ade:Adeh_3433 amidase YP_001767552.1 KEGG: mex:Mext_1188 hypothetical protein YP_001767553.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: xfa:XF1743 esterase YP_001767554.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bra:BRADO2131 conserved hypothetical protein; putative signal peptide; putative aminohydrolase YP_001767555.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pla:Plav_2526 methyltransferase type 11 YP_001767556.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: azc:AZC_1897 TRAP dicarboxylate transporter DctM subunit YP_001767557.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: azc:AZC_1896 TRAP dicarboxylate transporter DctP subunit YP_001767558.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: azc:AZC_1895 transcriptional regulator YP_001767559.1 PFAM: oxidoreductase domain protein; dihydrodipicolinate reductase; SAF domain protein; KEGG: azc:AZC_1894 putative homoserine dehydrogenase YP_001767560.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: azc:AZC_1893 hypothetical protein YP_001767561.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: azc:AZC_1892 3-hydroxyisobutyrate dehydrogenase YP_001767562.1 KEGG: mex:Mext_4709 hypothetical protein YP_001767564.1 KEGG: lma:LmjF35.0290 hypothetical protein, conserved YP_001767567.1 KEGG: swi:Swit_5308 hypothetical protein YP_001767568.1 KEGG: rpe:RPE_1606 protein of unknown function DUF1476 YP_001767569.1 PFAM: protein of unknown function DUF159; KEGG: rpd:RPD_0010 protein of unknown function DUF159 YP_001767570.1 KEGG: mlo:mll8493 hypothetical protein YP_001767573.1 KEGG: cvi:CV_3566 hypothetical protein YP_001767576.1 PFAM: OmpW family protein; KEGG: bra:BRADO6590 conserved hypothetical protein; putative signal peptide; putative outer membrane protein precursor YP_001767577.1 KEGG: atc:AGR_L_450 hypothetical protein YP_001767578.1 PFAM: Integrase catalytic region; KEGG: sen:SACE_5091 transposase YP_001767579.1 KEGG: mex:Mext_4254 hypothetical protein YP_001767581.1 KEGG: mex:Mext_1785 hypothetical protein YP_001767582.1 PFAM: ROSMUCR transcriptional regulator; KEGG: xau:Xaut_1838 transcriptional regulator, MucR family YP_001767586.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: mex:Mext_3383 response regulator receiver YP_001767587.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mex:Mext_3382 ATP-binding region ATPase domain protein YP_001767588.1 TIGRFAM: urea ABC transporter, urea binding protein; KEGG: bja:blr0967 ABC transporter substrate-binding protein YP_001767589.1 TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; KEGG: mex:Mext_3380 UreA ABC transporter, permease protein UrtB YP_001767590.1 TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: mex:Mext_3379 UreA ABC transporter, permease protein UrtC YP_001767591.1 TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; KEGG: mex:Mext_3378 UreA ABC transporter, ATP-binding protein UrtD YP_001767592.1 KEGG: mex:Mext_3377 UreA ABC transporter, ATP-binding protein UrtE; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; SMART: AAA ATPase YP_001767593.1 PFAM: Acetamidase/Formamidase; KEGG: mex:Mext_3375 formamidase YP_001767594.1 TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: mex:Mext_3374 regulatory protein, FmdB family YP_001767595.1 aliphatic amidase; catalyzes the hydrolysis of short-chain aliphatic amides to their organic acids and can also transfer the acyl moiety of short-chain amides to hydroxylamine to form hydroxamates YP_001767596.1 PFAM: ATPase associated with various cellular activities AAA_5; CbbQ/NirQ/NorQ domain protein; KEGG: rsq:Rsph17025_4065 hypothetical protein YP_001767597.1 SMART: von Willebrand factor type A; KEGG: bra:BRADO5860 conserved hypothetical protein; putative Von Willebrand factor type A domain YP_001767598.1 PFAM: lipolytic protein G-D-S-L family; KEGG: nve:NEMVE_v1g200840 predicted protein Pfam: Lipase_GDSL YP_001767600.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: mex:Mext_3038 membrane bound O-acyl transferase MBOAT family protein YP_001767601.1 PFAM: thioesterase superfamily protein; KEGG: cvi:CV_3201 hypothetical protein YP_001767602.1 PFAM: globin; KEGG: azc:AZC_0683 putative hemoprotein YP_001767603.1 PFAM: ROSMUCR transcriptional regulator; KEGG: xau:Xaut_1838 transcriptional regulator, MucR family YP_001767604.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: acr:Acry_2591 gluconolactonase YP_001767605.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSp0834 probable hexuronate transporter transmembrane protein YP_001767606.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: smd:Smed_0184 transcriptional regulator, GntR family YP_001767607.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: bxe:Bxe_B1807 hypothetical protein YP_001767608.1 PFAM: aldo/keto reductase; KEGG: afw:Anae109_2886 aldo/keto reductase YP_001767609.1 KEGG: mex:Mext_3216 metallophosphoesterase YP_001767610.1 PFAM: helix-turn-helix domain protein; KEGG: rpa:RPA4327 transcriptional regulator, XRE family YP_001767611.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: swi:Swit_0640 sulphate transporter YP_001767612.1 PFAM: dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: rpb:RPB_2618 NmrA-like protein YP_001767613.1 PFAM: helix-turn-helix HxlR type; KEGG: mex:Mext_4023 helix-turn-helix HxlR type YP_001767614.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; CHASE3 domain protein; KEGG: rpb:RPB_2961 methyl-accepting chemotaxis sensory transducer YP_001767615.1 KEGG: kra:Krad_4201 hypothetical protein YP_001767616.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: dac:Daci_4315 transcriptional regulator, AraC family YP_001767618.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mex:Mext_0458 RNA polymerase sigma factor, sigma-70 family YP_001767619.1 KEGG: bcy:Bcer98_3414 putative VrrB protein YP_001767620.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: rpd:RPD_0836 response regulator receiver YP_001767621.1 PFAM: SNARE associated Golgi protein; KEGG: mex:Mext_4503 SNARE associated Golgi protein YP_001767622.1 PFAM: protein of unknown function UPF0047; KEGG: mex:Mext_3238 protein of unknown function UPF0047 YP_001767623.1 PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: mex:Mext_3237 ATP dependent DNA ligase YP_001767624.1 KEGG: mex:Mext_3236 putative mRNA 3-end processing factor YP_001767625.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mex:Mext_3235 methyltransferase type 12 YP_001767626.1 TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: mex:Mext_2075 uridylate kinase YP_001767627.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_001767628.1 KEGG: mex:Mext_2085 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_001767629.1 PFAM: phosphatidate cytidylyltransferase; KEGG: mex:Mext_2084 phosphatidate cytidylyltransferase YP_001767630.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mex:Mext_4691 chemotaxis sensory transducer YP_001767631.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_001767632.1 TIGRFAM: membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: mex:Mext_2082 membrane-associated zinc metalloprotease YP_001767633.1 TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: mex:Mext_2081 outer membrane protein assembly complex, YaeT protein YP_001767634.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: gdi:GDI2844 putative transcriptional regulator, LysR family YP_001767635.1 PFAM: ThiJ/PfpI domain protein; KEGG: gdi:GDI2843 putative intracellular protease/amidase YP_001767636.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_001767637.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_001767638.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_001767639.1 PFAM: protein of unknown function DUF1009; KEGG: mex:Mext_4677 protein of unknown function DUF1009 YP_001767640.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_001767641.1 KEGG: mex:Mext_4680 citrate synthase I; TIGRFAM: citrate synthase I; PFAM: Citrate synthase YP_001767642.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: mex:Mext_4681 glutamyl-tRNA synthetase YP_001767643.1 PFAM: ComEC/Rec2-related protein; KEGG: mex:Mext_4682 ComEC/Rec2-related protein YP_001767645.1 KEGG: bja:blr4629 hypothetical protein YP_001767646.1 PFAM: protein of unknown function DUF188; KEGG: mex:Mext_4679 protein of unknown function DUF188 YP_001767647.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: mex:Mext_4137 response regulator receiver YP_001767648.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpe:RPE_2818 TonB-dependent receptor YP_001767649.1 KEGG: mex:Mext_0437 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001767650.1 KEGG: mex:Mext_1764 hypothetical protein YP_001767651.1 PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_4750 major facilitator superfamily MFS_1 YP_001767652.1 PFAM: response regulator receiver; KEGG: mex:Mext_2973 response regulator receiver YP_001767653.1 PFAM: Ppx/GppA phosphatase; KEGG: mex:Mext_3433 Ppx/GppA phosphatase YP_001767654.1 KEGG: cvi:CV_2539 hypothetical protein YP_001767655.1 KEGG: cvi:CV_2538 hypothetical protein YP_001767656.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: mex:Mext_3432 ribosomal RNA methyltransferase RrmJ/FtsJ YP_001767657.1 KEGG: mex:Mext_4117 hypothetical protein YP_001767659.1 KEGG: pna:Pnap_4772 poly (3-hydroxybutyrate) depolymerase YP_001767660.1 KEGG: pna:Pnap_4771 hypothetical protein YP_001767661.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rpb:RPB_1647 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_001767662.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: bja:bll1209 ABC transporter ATP-binding protein YP_001767663.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_1649 binding-protein-dependent transport systems inner membrane component YP_001767664.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_1650 binding-protein-dependent transport systems inner membrane component YP_001767665.1 PFAM: extracellular solute-binding protein family 5; KEGG: rpb:RPB_1651 extracellular solute-binding protein, family 5 YP_001767666.1 PFAM: class II aldolase/adducin family protein; KEGG: rpb:RPB_1652 class II aldolase/adducin-like YP_001767667.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rpb:RPB_1653 transcriptional regulator, GntR family YP_001767668.1 PFAM: histone deacetylase superfamily; KEGG: rpb:RPB_1654 histone deacetylase superfamily YP_001767669.1 PFAM: response regulator receiver; KEGG: mex:Mext_3778 response regulator receiver YP_001767670.1 PFAM: glutamine amidotransferase class-II; KEGG: mex:Mext_3779 glutamine amidotransferase class-II YP_001767671.1 KEGG: xau:Xaut_2554 hypothetical protein YP_001767672.1 KEGG: mex:Mext_2471 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Exonuclease; Helix-hairpin-helix domain protein class 2 YP_001767673.1 KEGG: mex:Mext_0918 hypothetical protein YP_001767674.1 PFAM: ribonuclease T2; KEGG: mex:Mext_0919 ribonuclease T2 YP_001767675.1 KEGG: sps:SPs0939 SclB protein YP_001767676.1 KEGG: mex:Mext_3775 putative glutathione-S-transferase protein YP_001767677.1 TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: mex:Mext_3776 polyhydroxyalkanoate depolymerase, intracellular YP_001767678.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_001767679.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: azc:AZC_2608 hypothetical protein YP_001767680.1 PFAM: flagellin hook IN repeat protein; KEGG: rpd:RPD_1670 hypothetical protein YP_001767681.1 PFAM: flagellar FlbT family protein; KEGG: mex:Mext_1248 flagellar FlbT family protein YP_001767682.1 PFAM: protein of unknown function DUF892; KEGG: mex:Mext_2776 protein of unknown function DUF892 YP_001767683.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_4741 ABC transporter related YP_001767684.1 KEGG: rpd:RPD_4236 hypothetical protein YP_001767685.1 KEGG: rpb:RPB_2015 hypothetical protein YP_001767686.1 KEGG: mex:Mext_4740 phosphatidylserine decarboxylase related protein; TIGRFAM: phosphatidylserine decarboxylase related protein; PFAM: phosphatidylserine decarboxylase-related YP_001767687.1 KEGG: mex:Mext_4739 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_001767688.1 PFAM: CBS domain containing protein; peptidase M50; KEGG: xau:Xaut_1988 peptidase M50 YP_001767689.1 PFAM: OmpA/MotB domain protein; KEGG: mex:Mext_4749 OmpA/MotB domain protein YP_001767690.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_001767691.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_001767692.1 PFAM: Lytic transglycosylase catalytic; Tetratricopeptide TPR_4; KEGG: mex:Mext_3190 lytic transglycosylase catalytic YP_001767693.1 PFAM: protein of unknown function DUF77; KEGG: csa:Csal_2434 protein of unknown function DUF77 YP_001767694.1 KEGG: bbt:BBta_0754 putative exported protein of unknown function YP_001767695.1 KEGG: mex:Mext_3187 hypothetical protein YP_001767696.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: swi:Swit_2139 TPR repeat-containing protein YP_001767697.1 PFAM: porin; KEGG: mex:Mext_3186 porin YP_001767698.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_3185 ABC transporter related YP_001767699.1 PFAM: beta-lactamase domain protein; KEGG: xau:Xaut_1359 beta-lactamase domain protein YP_001767700.1 KEGG: bur:Bcep18194_B2011 hypothetical protein YP_001767701.1 KEGG: mex:Mext_3184 hypothetical protein YP_001767702.1 KEGG: mex:Mext_3183 hypothetical protein YP_001767703.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: mex:Mext_3182 rare lipoprotein A YP_001767704.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: mex:Mext_3181 DNA methylase N-4/N-6 domain protein YP_001767705.1 PFAM: response regulator receiver; KEGG: rpb:RPB_0497 response regulator receiver domain protein YP_001767706.1 KEGG: bja:bll0233 hypothetical protein YP_001767710.1 KEGG: mex:Mext_0048 hypothetical protein YP_001767711.1 PFAM: CsbD family protein; KEGG: aba:Acid345_2041 CsbD-like protein YP_001767714.1 KEGG: rle:RL2507 hypothetical protein YP_001767715.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: ret:RHE_CH02180 putative adenylate cyclase protein YP_001767716.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bra:BRADO6973 putative transcriptional regulator, Crp/Fnr family YP_001767718.1 PFAM: ROSMUCR transcriptional regulator; KEGG: xau:Xaut_1838 transcriptional regulator, MucR family YP_001767725.1 KEGG: bja:bll5194 hypothetical protein YP_001767726.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: azo:azo2543 putative 4-hydroxybenzoate transporter protein YP_001767729.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: smd:Smed_5774 peptidase S8 and S53 subtilisin kexin sedolisin YP_001767730.1 KEGG: mex:Mext_3086 catalase YP_001767731.1 KEGG: mex:Mext_0536 hypothetical protein YP_001767732.1 PFAM: protein of unknown function DUF892; KEGG: mex:Mext_3614 protein of unknown function DUF892 YP_001767733.1 KEGG: rpe:RPE_3641 alpha/beta hydrolase fold YP_001767734.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; KEGG: mex:Mext_4707 carbohydrate kinase, YjeF related protein YP_001767735.1 PFAM: Phosphoglycerate mutase; KEGG: nar:Saro_0181 phosphoglycerate/bisphosphoglycerate mutase YP_001767736.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; type IV pilus assembly PilZ; KEGG: ccr:CC_0593 methyl-accepting chemotaxis protein McpK YP_001767738.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mex:Mext_0458 RNA polymerase sigma factor, sigma-70 family YP_001767739.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: mmr:Mmar10_2325 transcriptional regulator, MerR family YP_001767741.1 KEGG: pna:Pnap_3987 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane YP_001767744.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: rsq:Rsph17025_0824 phosphoesterase, PA-phosphatase related YP_001767745.1 PFAM: transposase mutator type; KEGG: rpc:RPC_3939 transposase, mutator type YP_001767746.1 KEGG: pde:Pden_4272 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein YP_001767747.1 PFAM: inner-membrane translocator; KEGG: pde:Pden_4271 inner-membrane translocator YP_001767748.1 PFAM: inner-membrane translocator; KEGG: pde:Pden_4270 inner-membrane translocator YP_001767749.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pde:Pden_4269 ABC transporter related YP_001767750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pde:Pden_4268 ABC transporter related YP_001767751.1 PFAM: MlrC domain protein; Microcystin LR degradation protein MlrC-like; KEGG: pde:Pden_4266 MlrC domain protein YP_001767752.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pde:Pden_4265 GntR domain protein YP_001767754.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate YP_001767755.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: ret:RHE_PF00433 putative transcriptional regulator protein, MerR family YP_001767756.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: mex:Mext_1544 3-hydroxybutyryl-CoA dehydrogenase YP_001767757.1 PFAM: NMT1/THI5 like domain protein; KEGG: bbt:BBta_7630 putative exported protein of unknown function YP_001767758.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_7629 putative ABC transporter permease protein YP_001767759.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbt:BBta_7628 ABC transporter ATP-binding protein YP_001767760.1 PFAM: integrase family protein; KEGG: mex:Mext_0791 integrase family protein YP_001767761.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: bja:bll5646 transcriptional regulatory protein YP_001767762.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bte:BTH_II1095 major facilitator family transporter YP_001767763.1 PFAM: amidohydrolase 2; KEGG: rso:RS05190 probable hydrolase transmembrane protein YP_001767764.1 PFAM: major facilitator superfamily MFS_1; KEGG: rpc:RPC_2715 major facilitator superfamily MFS_1 YP_001767765.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: reh:H16_B1016 isocitrate dehydrogenase [NAD] YP_001767766.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: pla:Plav_2375 thiamine pyrophosphate protein domain protein TPP-binding YP_001767767.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: rle:pRL100103 putative alcohol dehydrogenase YP_001767768.1 KEGG: rle:pRL100104 hypothetical protein YP_001767769.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; PFAM: alpha/beta hydrolase fold; KEGG: rle:pRL100105 putative polyhydroxyalkanoate synthase subunit C YP_001767770.1 PFAM: coenzyme A transferase; KEGG: dsh:Dshi_0709 coenzyme A transferase YP_001767771.1 PFAM: adenylate kinase; KEGG: mex:Mext_2180 adenylate kinase YP_001767772.1 KEGG: rpc:RPC_3941 phasin 2 YP_001767773.1 PFAM: alpha/beta hydrolase fold; KEGG: azo:azo1513 probable hydrolase YP_001767774.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: pmy:Pmen_0231 succinic semialdehyde dehydrogenase YP_001767775.1 PFAM: alpha/beta hydrolase fold; KEGG: mag:amb3246 predicted hydrolase or acyltransferase YP_001767776.1 TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); KEGG: mex:Mext_0935 DNA-3-methyladenine glycosylase YP_001767777.1 KEGG: mex:Mext_0902 hypothetical protein YP_001767778.1 KEGG: bja:bll3105 hypothetical protein YP_001767779.1 KEGG: psa:PST_3072 hypothetical protein YP_001767780.1 PFAM: Patatin; KEGG: rme:Rmet_4690 patatin YP_001767781.1 PFAM: protein of unknown function UPF0118; KEGG: sme:SMa1676 hypothetical protein YP_001767782.1 PFAM: Citrate transporter; KEGG: azc:AZC_1305 putative H+/gluconate symporter YP_001767783.1 PFAM: beta-lactamase domain protein; KEGG: azc:AZC_1303 metallo-beta-lactamase superfamily protein YP_001767785.1 KEGG: tko:TK1576 hypothetical protein YP_001767791.1 KEGG: lpc:LPC_0212 hypothetical protein YP_001767798.1 PFAM: protein of unknown function DUF927; KEGG: gdi:GDI3600 hypothetical protein YP_001767800.1 PFAM: integrase family protein; KEGG: btr:Btr_0982 phage-related integrase/recombinase YP_001767802.1 PFAM: ParB domain protein nuclease YP_001767804.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: gox:GOX1060 DNA integration/recombination/invertion protein YP_001767806.1 PFAM: integrase family protein; KEGG: ret:RHE_CH00241 putative recombinase protein, phage integrase family YP_001767807.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_001767808.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpd:RPD_3320 binding-protein-dependent transport systems inner membrane component YP_001767809.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr3919 ABC transporter permease protein YP_001767810.1 PFAM: extracellular solute-binding protein family 1; KEGG: bja:blr3918 ABC transporter substrate-binding protein YP_001767811.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: azc:AZC_4208 ABC transporter ATP-binding protein YP_001767812.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: mex:Mext_4354 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding YP_001767813.1 KEGG: mex:Mext_4353 hypothetical protein YP_001767814.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: rle:pRL100103 putative alcohol dehydrogenase YP_001767815.1 KEGG: mex:Mext_1190 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001767819.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mex:Mext_2631 TonB-dependent siderophore receptor YP_001767820.1 PFAM: PepSY-associated TM helix domain protein; KEGG: rpd:RPD_0701 PepSY-associated TM helix YP_001767821.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: azc:AZC_0936 short-chain dehydrogenase YP_001767822.1 PFAM: protein of unknown function UPF0187; KEGG: mex:Mext_0368 protein of unknown function UPF0187 YP_001767823.1 PFAM: OmpA/MotB domain protein; KEGG: rpe:RPE_0907 OmpA/MotB domain protein YP_001767826.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: mex:Mext_0206 metal-dependent phosphohydrolase HD sub domain YP_001767827.1 PFAM: regulatory protein LysR; KEGG: mex:Mext_3479 regulatory protein LysR YP_001767828.1 KEGG: rsq:Rsph17025_4400 hypothetical protein YP_001767831.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mex:Mext_1018 short-chain dehydrogenase/reductase SDR YP_001767834.1 PFAM: Ethanolamine ammonia lyase large subunit; KEGG: mex:Mext_1952 ethanolamine ammonia lyase large subunit YP_001767835.1 PFAM: Ethanolamine ammonia-lyase light chain; KEGG: mex:Mext_1953 ethanolamine ammonia-lyase YP_001767836.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_001767837.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: mex:Mext_3773 ATP-binding region ATPase domain protein YP_001767838.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mex:Mext_3772 response regulator receiver YP_001767839.1 PFAM: protein of unknown function DUF526; KEGG: mex:Mext_3771 protein of unknown function DUF526 YP_001767840.1 PFAM: Protein of unknown function DUF1790; KEGG: mex:Mext_3770 protein of unknown function DUF1790 YP_001767841.1 TIGRFAM: TonB family protein; KEGG: mex:Mext_1616 TonB family protein YP_001767842.1 TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mex:Mext_1617 protein TolR YP_001767843.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: mex:Mext_1618 MotA/TolQ/ExbB proton channel YP_001767844.1 KEGG: mex:Mext_1619 hypothetical protein YP_001767845.1 KEGG: bra:BRADO0437 conserved hypothetical protein; putative glucokinase YP_001767846.1 KEGG: mex:Mext_2333 PRC-barrel YP_001767847.1 PFAM: response regulator receiver; KEGG: mex:Mext_2334 response regulator receiver YP_001767848.1 SMART: WD-40 repeat protein; KEGG: mex:Mext_2336 WD-40 repeat protein YP_001767849.1 KEGG: mex:Mext_2337 hypothetical protein YP_001767850.1 KEGG: mex:Mext_2339 hypothetical protein YP_001767851.1 PFAM: protein of unknown function DUF1025; KEGG: mex:Mext_2340 protein of unknown function DUF1025 YP_001767853.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; pyrimidine 5'-nucleotidase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mex:Mext_2341 pyrimidine 5'-nucleotidase YP_001767854.1 TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: mex:Mext_2342 acetylglutamate kinase YP_001767855.1 PFAM: regulatory protein MarR; regulatory protein LysR; LysR substrate-binding; KEGG: acr:Acry_3428 transcriptional regulator, LysR family YP_001767856.1 PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mlr2264 probable antibiotic resistance protein YP_001767857.1 catalyzes the release of C-terminal glutamate residues from N-acylating moieties YP_001767858.1 PFAM: MlrC domain protein; Microcystin LR degradation protein MlrC-like; KEGG: sil:SPO1209 MlrC domain protein YP_001767859.1 PFAM: AMP-dependent synthetase and ligase; KEGG: mex:Mext_0346 AMP-dependent synthetase and ligase YP_001767860.1 KEGG: mex:Mext_0809 chemotaxis sensory transducer YP_001767861.1 PFAM: beta-lactamase domain protein; GAF domain protein; KEGG: swo:Swol_0338 beta-lactamase-like protein YP_001767862.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mex:Mext_0802 PAS sensor protein YP_001767863.1 PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_1211 major facilitator superfamily MFS_1 YP_001767864.1 PFAM: alpha/beta hydrolase fold; KEGG: ccr:CC_0355 hydrolase, putative YP_001767865.1 KEGG: mex:Mext_3769 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent YP_001767866.1 PFAM: regulatory protein TetR; KEGG: mex:Mext_3768 putative transcriptional regulator, TetR family YP_001767867.1 PFAM: MmgE/PrpD family protein; KEGG: bbt:BBta_2745 hypothetical protein YP_001767868.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_B1252 major facilitator superfamily (MFS) multidrug efflux pump YP_001767869.1 PFAM: Haem oxygenase; KEGG: rsq:Rsph17025_4278 hypothetical protein YP_001767871.1 KEGG: acr:Acry_2063 patatin YP_001767872.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: mlo:mlr6287 ABC transporter ATP-binding protein YP_001767874.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr1355 peptide ABC transporter permease protein YP_001767875.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_6954 oligopeptide ABC transporter (substrate-binding protein) YP_001767876.1 PFAM: extracellular solute-binding protein family 5; KEGG: bbt:BBta_6955 oligopeptide ABC transporter (substrate-binding protein) YP_001767877.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bja:blr1352 aminobenzoyl-glutamate utilization protein YP_001767878.1 PFAM: flagellar FlaF family protein; KEGG: mex:Mext_1612 flagellar FlaF family protein YP_001767879.1 KEGG: mex:Mext_1613 hypothetical protein YP_001767881.1 KEGG: mex:Mext_1614 hypothetical protein YP_001767882.1 PFAM: metallophosphoesterase; KEGG: mex:Mext_1615 metallophosphoesterase YP_001767883.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: azc:AZC_0933 3-hydroxyacyl-CoA dehydrogenase type II YP_001767884.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mex:Mext_4328 endonuclease/exonuclease/phosphatase YP_001767885.1 KEGG: mes:Meso_4027 hypothetical protein YP_001767887.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: mes:Meso_4028 phospholipase D/transphosphatidylase YP_001767888.1 KEGG: mex:Mext_3592 hypothetical protein YP_001767889.1 KEGG: hch:HCH_06999 superfamily II DNA/RNA helicase, SNF2 family; PFAM: SNF2-related protein; helicase domain protein; zinc finger SWIM domain protein; SMART: DEAD-like helicases YP_001767890.1 PFAM: acriflavin resistance protein; KEGG: rpa:RPA4680 putative efflux transporter YP_001767891.1 KEGG: bbt:BBta_0556 putative HlyD family secretion protein YP_001767892.1 PFAM: OmpA/MotB domain protein; KEGG: bbt:BBta_2207 putative outer membrane protein of unknown function YP_001767893.1 PFAM: TPR repeat-containing protein; peptidase C14 caspase catalytic subunit p20; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpe:RPE_0908 peptidase C14, caspase catalytic subunit P20 YP_001767894.1 PFAM: OmpA/MotB domain protein; KEGG: mlo:mll2368 hypothetical protein YP_001767895.1 PFAM: Stage II sporulation E family protein; Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: mlo:mlr2361 probable phosphoprotein phosphatase YP_001767896.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: bja:blr3604 probable serine/threonine kinase YP_001767898.1 PFAM: OmpA/MotB domain protein; KEGG: rpb:RPB_0896 OmpA/MotB YP_001767899.1 KEGG: sus:Acid_1971 hypothetical protein; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; SMART: Nidogen extracellular domain protein YP_001767900.1 KEGG: mex:Mext_3656 metal dependent phophohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_001767901.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: bra:BRADO6981 conserved hypothetical protein; putative signal peptide YP_001767902.1 KEGG: rpd:RPD_1004 AsmA YP_001767903.1 PFAM: peptidase C14 caspase catalytic subunit p20; SMART: Peptidase C14, caspase precursor p45, core; KEGG: bja:bll5696 hypothetical protein YP_001767904.1 PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: afw:Anae109_3652 putative adenylate/guanylate cyclase YP_001767905.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_001767906.1 PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_3129 major facilitator superfamily MFS_1 YP_001767907.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mex:Mext_3128 short-chain dehydrogenase/reductase SDR YP_001767908.1 PFAM: porin; KEGG: mex:Mext_3186 porin YP_001767909.1 PFAM: SWIB/MDM2 domain protein; KEGG: mex:Mext_3127 SWIB/MDM2 domain protein YP_001767910.1 PFAM: aldo/keto reductase; KEGG: rpa:RPA1654 putative oxido-reductase YP_001767912.1 PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_1009 major facilitator superfamily MFS_1 YP_001767913.1 KEGG: mex:Mext_4176 hypothetical protein YP_001767914.1 PFAM: PRC-barrel domain protein; KEGG: mex:Mext_3126 PRC-barrel domain protein YP_001767915.1 KEGG: mlo:mll9619 hypothetical protein YP_001767916.1 Catalyzes the deamination of cytosine to uracil and ammonia YP_001767917.1 PFAM: inner-membrane translocator; KEGG: sil:SPO2805 sugar ABC transporter, permease protein YP_001767918.1 PFAM: inner-membrane translocator; KEGG: rru:Rru_A2786 inner-membrane translocator YP_001767919.1 PFAM: UbiA prenyltransferase; KEGG: mex:Mext_3163 UbiA prenyltransferase YP_001767920.1 KEGG: mex:Mext_3165 hypothetical protein YP_001767921.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: bbt:BBta_0712 putative sensor histidine kinase YP_001767922.1 PFAM: UspA domain protein; KEGG: acr:Acry_1314 UspA domain protein YP_001767923.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mex:Mext_1382 TonB-dependent receptor YP_001767924.1 KEGG: mex:Mext_1381 hypothetical protein YP_001767925.1 PFAM: cytochrome c class I; KEGG: mex:Mext_1356 cytochrome c class I YP_001767926.1 PFAM: glycosyl transferase family 2; KEGG: xfa:XF0612 dolichol-phosphate mannosyltransferase YP_001767927.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mgm:Mmc1_1427 methyltransferase type 12 YP_001767928.1 KEGG: rha:RHA1_ro04107 hypothetical protein YP_001767929.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: mex:Mext_1357 cyclic nucleotide-binding YP_001767931.1 KEGG: azc:AZC_4652 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001767933.1 PFAM: Extensin family protein; KEGG: mex:Mext_0917 extensin family protein YP_001767934.1 KEGG: mex:Mext_1589 hypothetical protein YP_001767935.1 KEGG: fal:FRAAL5473 hypothetical protein YP_001767936.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: mex:Mext_1756 phospholipid/glycerol acyltransferase YP_001767937.1 TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mex:Mext_2296 phosphoglycolate phosphatase YP_001767939.1 PFAM: Protein of unknown function DUF1778; KEGG: nwi:Nwi_2855 hypothetical protein YP_001767940.1 PFAM: Integrase catalytic region; KEGG: rso:RS05623 probable transposase protein YP_001767941.1 PFAM: transposase IS3/IS911 family protein; KEGG: ypn:YPN_3423 helix-turn-helix, fis-type YP_001767942.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: nwi:Nwi_2089 AAA ATPase YP_001767943.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_001767944.1 KEGG: mex:Mext_2933 hypothetical protein YP_001767945.1 PFAM: Fmu (Sun) domain protein; KEGG: mex:Mext_2934 Fmu (Sun) domain protein YP_001767947.1 KEGG: mex:Mext_2939 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase YP_001767952.1 KEGG: fra:Francci3_3696 metal dependent phosphohydrolase YP_001767953.1 KEGG: rpe:RPE_1591 hypothetical protein YP_001767956.1 PFAM: peptidase M10A and M12B matrixin and adamalysin; FG-GAP repeat protein; SMART: peptidase metallopeptidase; KEGG: bbt:BBta_4186 hypothetical protein YP_001767959.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: mpt:Mpe_A0409 hypothetical protein YP_001767960.1 PFAM: histone deacetylase superfamily; KEGG: xau:Xaut_1155 histone deacetylase superfamily YP_001767962.1 PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_3117 putative transport protein (MFS superfamily) YP_001767963.1 PFAM: Catalase domain protein; KEGG: mex:Mext_2314 catalase domain protein YP_001767965.1 PFAM: ROSMUCR transcriptional regulator; KEGG: mex:Mext_4463 ROSMUCR transcriptional regulator YP_001767968.1 KEGG: scl:sce4847 hypothetical protein YP_001767969.1 KEGG: amr:AM1_2608 glutathione S-transferase, putative YP_001767970.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: tbd:Tbd_1371 conserved hypothetical protein containing TPR repeat YP_001767971.1 PFAM: ROSMUCR transcriptional regulator; KEGG: azc:AZC_1086 putative transcriptional regulator YP_001767972.1 PFAM: histone family protein DNA-binding protein; KEGG: azc:AZC_3716 integration host factor beta subunit YP_001767974.1 KEGG: azc:AZC_1931 transposase YP_001767975.1 KEGG: rsq:Rsph17025_3556 hypothetical protein YP_001767976.1 KEGG: mex:Mext_3583 hypothetical protein YP_001767977.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group YP_001767979.1 KEGG: hau:Haur_2022 hypothetical protein YP_001767982.1 PFAM: NapC/NirT cytochrome c domain protein; KEGG: bbt:BBta_1860 periplasmic nitrate reductase, four-heme C-type cytochrome (NapC/NirT) YP_001767983.1 PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: rsp:RSP_4117 nitrate reductase cytochrome c-type YP_001767984.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC YP_001767985.1 PFAM: NapD family protein; KEGG: pmy:Pmen_2980 NapD family protein YP_001767986.1 PFAM: periplasmic nitrate reductase NapE; KEGG: nha:Nham_0888 periplasmic nitrate reductase NapE YP_001767987.1 KEGG: bbt:BBta_0580 putative phage integrase YP_001767988.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: xau:Xaut_1773 chromate transporter, chromate ion transporter (CHR) family YP_001767989.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mex:Mext_0141 chemotaxis sensory transducer YP_001767990.1 PFAM: Hpt domain protein; KEGG: mex:Mext_1782 PAS sensor protein YP_001767991.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: xfa:XF1743 esterase YP_001767992.1 KEGG: mex:Mext_3125 hypothetical protein YP_001767993.1 KEGG: gbe:GbCGDNIH1_1407 hypothetical protein YP_001767994.1 PFAM: ROSMUCR transcriptional regulator; KEGG: mex:Mext_4474 ROSMUCR transcriptional regulator YP_001767995.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: azc:AZC_3224 putative 4-methylmuconolactone transporter YP_001767996.1 PFAM: amidohydrolase 2; KEGG: rpa:RPA1080 possible 2-pyrone-4,6-dicarboxylate hydrolase YP_001767998.1 KEGG: mex:Mext_1485 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease YP_001767999.1 KEGG: mex:Mext_1488 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_001768000.1 TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: mex:Mext_1489 shikimate 5-dehydrogenase YP_001768001.1 PFAM: Maf family protein; KEGG: mex:Mext_1491 maf protein YP_001768003.1 PFAM: protein of unknown function DUF299; KEGG: mex:Mext_1493 protein of unknown function DUF299 YP_001768004.1 KEGG: mex:Mext_1494 uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D) YP_001768005.1 PFAM: conserved hypothetical protein; KEGG: mex:Mext_1495 hypothetical protein YP_001768006.1 KEGG: mex:Mext_1571 hypothetical protein YP_001768007.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; Ada metal-binding domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: pde:Pden_4239 methylated-DNA--protein-cysteine methyltransferase YP_001768008.1 KEGG: mxa:MXAN_5938 hypothetical protein YP_001768010.1 KEGG: mex:Mext_2963 conserved hypothetical protein; putative secreted protein YP_001768011.1 KEGG: mex:Mext_0706 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_001768012.1 PFAM: beta-lactamase domain protein; KEGG: mex:Mext_4154 beta-lactamase domain protein YP_001768013.1 PFAM: protein of unknown function DUF534; KEGG: bbt:BBta_p0039 putative ABC-type uncharacterized transport system, periplasmic component YP_001768014.1 KEGG: mex:Mext_0166 hypothetical protein YP_001768015.1 PFAM: Hydratase/decarboxylase; KEGG: mpt:Mpe_A0408 putative decarboxylase YP_001768016.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rpc:RPC_3164 GCN5-related N-acetyltransferase YP_001768017.1 PFAM: protein of unknown function DUF534; KEGG: bbt:BBta_p0039 putative ABC-type uncharacterized transport system, periplasmic component YP_001768018.1 KEGG: bbt:BBta_4905 sensor histidine kinase with multiple PAS and a response regulator receiver domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001768019.1 KEGG: gsu:GSU3082 ISGsu7, transposase OrfA YP_001768020.1 PFAM: Integrase catalytic region; KEGG: gsu:GSU3083 ISGsu7, transposase OrfB YP_001768021.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mex:Mext_0021 short-chain dehydrogenase/reductase SDR YP_001768022.1 KEGG: mex:Mext_0663 putative DNA-binding protein YP_001768023.1 KEGG: mex:Mext_0981 hypothetical protein YP_001768025.1 PFAM: protein of unknown function UPF0118; KEGG: mex:Mext_3812 protein of unknown function UPF0118 YP_001768026.1 KEGG: bja:blr5365 hypothetical protein YP_001768027.1 KEGG: lpc:LPC_0476 hypothetical protein YP_001768028.1 TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: mex:Mext_4205 polyhydroxyalkanoate depolymerase, intracellular YP_001768030.1 PFAM: glycoside hydrolase family 5; KEGG: rso:RSp0162 endoglucanase precursor (endo-1,4-beta-glucanase) protein YP_001768033.1 PFAM: HWE histidine kinase; PAS fold-4 domain protein; KEGG: mex:Mext_2022 PAS sensor protein YP_001768034.1 PFAM: glycosyl transferase group 1; KEGG: sen:SACE_6474 glycosyl transferase, group 1 YP_001768035.1 KEGG: xom:XOO_3016 GumE protein YP_001768036.1 PFAM: polysaccharide export protein; KEGG: bja:blr6311 putative exopolysaccharide production protein YP_001768037.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: bja:bll2362 succinoglycan biosynthesis transport protein YP_001768038.1 PFAM: glycosyl transferase group 1; KEGG: rle:RL4592 putative glycosyl transferase YP_001768039.1 TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase family 2; glycosyl transferase WecB/TagA/CpsF; KEGG: bvi:Bcep1808_5617 glycosyl transferase, family 2 YP_001768040.1 PFAM: glycoside hydrolase family 5; KEGG: xac:XAC0030 cellulase YP_001768041.1 PFAM: polysaccharide biosynthesis protein; KEGG: rle:RL4591 putative transmembrane teichuronic acid biosynthesis protein YP_001768042.1 TIGRFAM: methyltransferase FkbM family; KEGG: mpa:MAP1233 hypothetical protein YP_001768043.1 PFAM: glycosyl transferase group 1; KEGG: mpt:Mpe_A0723 glycosyltransferase-like protein YP_001768044.1 PFAM: glycosyl transferase family 2; KEGG: gdi:GDI2544 putative succinoglycan biosynthesis protein ExoO YP_001768045.1 PFAM: PhoH family protein; KEGG: mex:Mext_0323 PhoH family protein YP_001768046.1 PFAM: UvrD/REP helicase; KEGG: mex:Mext_0322 UvrD/REP helicase YP_001768048.1 KEGG: mex:Mext_2656 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_001768049.1 KEGG: azc:AZC_2571 hypothetical protein YP_001768050.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: mex:Mext_2657 HflC protein YP_001768051.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: mex:Mext_2658 HflK protein YP_001768052.1 PFAM: dihydrofolate reductase region; KEGG: mex:Mext_2659 dihydrofolate reductase YP_001768053.1 PFAM: thymidylate synthase; KEGG: mex:Mext_2660 thymidylate synthase YP_001768054.1 PFAM: Abortive infection protein; KEGG: mex:Mext_2661 abortive infection protein YP_001768055.1 PFAM: protein of unknown function DUF1321; KEGG: mex:Mext_2662 protein of unknown function DUF1321 YP_001768056.1 PFAM: cytochrome P450; KEGG: mex:Mext_2663 cytochrome P450 YP_001768057.1 TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; KEGG: mex:Mext_2664 fumarate hydratase, class II YP_001768058.1 KEGG: mex:Mext_2665 hypothetical protein YP_001768059.1 related to arylsulfate sulfotransferase involved in siderophore biosynthesis; KEGG: rru:Rru_A2208 hypothetical protein YP_001768060.1 PFAM: regulatory protein TetR; KEGG: xau:Xaut_4925 transcriptional regulator, TetR family YP_001768061.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mex:Mext_4341 efflux transporter, RND family, MFP subunit YP_001768062.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: mex:Mext_4340 efflux transporter, RND family, MFP subunit YP_001768063.1 PFAM: acriflavin resistance protein; KEGG: mex:Mext_4339 acriflavin resistance protein YP_001768064.1 TIGRFAM: bacterioferritin; PFAM: Rubrerythrin; Ferritin Dps family protein; KEGG: mex:Mext_1763 bacterioferritin YP_001768065.1 KEGG: bra:BRADO3287 hypothetical protein; putative signal peptide YP_001768066.1 KEGG: mex:Mext_4768 Holliday junction DNA helicase RuvB; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001768067.1 PFAM: metallophosphoesterase; KEGG: mex:Mext_4767 metallophosphoesterase YP_001768068.1 TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: mex:Mext_4765 tol-pal system-associated acyl-CoA thioesterase YP_001768069.1 PFAM: Chorismate mutase; KEGG: azc:AZC_4620 putative chorismate mutase YP_001768070.1 KEGG: mex:Mext_1760 homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold YP_001768071.1 TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: mex:Mext_1759 methionine biosynthesis protein MetW YP_001768072.1 KEGG: mxa:MXAN_2151 hypothetical protein YP_001768073.1 PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_3429 major facilitator superfamily MFS_1 YP_001768074.1 KEGG: rpa:RPA3602 hypothetical protein YP_001768075.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_001768076.1 PFAM: protein of unknown function UPF0153; KEGG: mex:Mext_0929 protein of unknown function UPF0153 YP_001768077.1 KEGG: mex:Mext_0928 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_001768078.1 PFAM: protein of unknown function DUF1214; KEGG: mex:Mext_0927 protein of unknown function DUF1214 YP_001768079.1 KEGG: mex:Mext_0926 hypothetical protein YP_001768080.1 KEGG: mex:Mext_0937 hypothetical protein YP_001768082.1 KEGG: mex:Mext_0697 hypothetical protein YP_001768083.1 PFAM: protein of unknown function DUF1491; KEGG: mex:Mext_0698 protein of unknown function DUF1491 YP_001768084.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: mex:Mext_0699 peptidoglycan-binding domain 1 protein YP_001768085.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: phosphoesterase PA-phosphatase related; Autotransporter beta- domain protein; KEGG: azc:AZC_2096 putative autotransporter YP_001768086.1 PFAM: Ion transport 2 domain protein; KEGG: mpt:Mpe_A3241 hypothetical protein YP_001768087.1 PFAM: electron transport protein SCO1/SenC; KEGG: mca:MCA0318 SCO1/SenC family protein/methylamine utilization protein MauG, putative YP_001768088.1 KEGG: mca:MCA0317 selenium-binding protein, putative YP_001768089.1 PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; KEGG: bbt:BBta_5116 putative 1,4-alpha-glucan branching enzyme YP_001768090.1 KEGG: bra:BRADO4654 hypothetical protein YP_001768091.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: rpb:RPB_2089 2OG-Fe(II) oxygenase YP_001768092.1 TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: nha:Nham_1515 MotA/TolQ/ExbB proton channel YP_001768093.1 TIGRFAM: TonB system transport protein ExbD; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpa:RPA3477 ExbD, uptake of enterochelin; TonB-dependent uptake of B colicins YP_001768094.1 TIGRFAM: TonB family protein; KEGG: nha:Nham_1517 TonB-like YP_001768095.1 PFAM: Protein of unknown function DUF1810; KEGG: mex:Mext_0712 protein of unknown function DUF1810 YP_001768096.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: bja:bll7664 putative adenylate cyclase 3 YP_001768097.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: jan:Jann_3529 phosphoesterase, PA-phosphatase related YP_001768098.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: fre:Franean1_0066 peptidase S8 and S53 subtilisin kexin sedolisin YP_001768099.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: mex:Mext_1282 methylmalonate-semialdehyde dehydrogenase YP_001768100.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xau:Xaut_3247 transcriptional regulator, LysR family YP_001768101.1 KEGG: fal:FRAAL2217 hypothetical protein; putative metalloprotease domain YP_001768105.1 PFAM: type II secretion system protein; KEGG: psp:PSPPH_3063 general secretion pathway protein GspF YP_001768107.1 KEGG: mlo:mll1857 hypothetical protein YP_001768108.1 KEGG: mex:Mext_3283 hypothetical protein YP_001768110.1 KEGG: eba:ebA5913 hypothetical protein YP_001768111.1 KEGG: mag:amb1638 hypothetical protein YP_001768112.1 KEGG: ptr:454664 keratin 9 (epidermolytic palmoplantar keratoderma) YP_001768113.1 PFAM: ROSMUCR transcriptional regulator; KEGG: mex:Mext_4463 ROSMUCR transcriptional regulator YP_001768117.1 PFAM: peptidase U35 phage prohead HK97; KEGG: oan:Oant_1504 peptidase U35 phage prohead HK97 YP_001768118.1 KEGG: she:Shewmr4_3774 signal recognition particle-docking protein FtsY YP_001768120.1 KEGG: bbr:BB3530 phage-related hypothetical protein YP_001768122.1 TIGRFAM: DNA binding domain protein, excisionase family YP_001768126.1 TIGRFAM: phage/plasmid primase, P4 family; PFAM: primase P4; KEGG: xau:Xaut_3437 phage/plasmid primase, P4 family YP_001768127.1 PFAM: Primase 1; Bifunctional DNA primase/polymerase; KEGG: cth:Cthe_1986 phage / plasmid primase, P4 family YP_001768130.1 PFAM: General secretory system II protein E domain protein; KEGG: acr:Acry_0893 type II secretion system protein E YP_001768131.1 PFAM: Fimbrial assembly family protein; KEGG: xcb:XC_3566 general secretion pathway protein L YP_001768132.1 KEGG: scl:sce7529 hypothetical protein YP_001768133.1 KEGG: mex:Mext_3861 RNA-binding S4 domain protein YP_001768134.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: mex:Mext_0031 general secretion pathway protein D YP_001768135.1 PFAM: Aldehyde Dehydrogenase_; KEGG: mex:Mext_4206 aldehyde dehydrogenase YP_001768136.1 PFAM: integrase family protein; KEGG: bja:blr8004 probable site-specific integrase/recombinase YP_001768142.1 KEGG: mex:Mext_2546 hypothetical protein YP_001768143.1 KEGG: mex:Mext_2525 hypothetical protein YP_001768149.1 KEGG: mex:Mext_0048 hypothetical protein YP_001768150.1 KEGG: mex:Mext_0531 hypothetical protein YP_001768152.1 KEGG: nha:Nham_2986 hypothetical protein YP_001768153.1 TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: bja:bll7116 aquaporin Z YP_001768154.1 PFAM: sulfatase; KEGG: xau:Xaut_3411 sulfatase YP_001768155.1 KEGG: nha:Nham_2981 NapD-like protein YP_001768156.1 PFAM: protein of unknown function DUF323; KEGG: nha:Nham_2985 protein of unknown function DUF323 YP_001768158.1 KEGG: mex:Mext_1136 acetate and butyrate kinase YP_001768159.1 KEGG: bja:bll2661 hypothetical protein YP_001768160.1 PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: rde:RD1_0529 MoxR-like ATPase, putative YP_001768161.1 PFAM: protein of unknown function DUF58; KEGG: reu:Reut_A2890 protein of unknown function DUF58 YP_001768162.1 KEGG: reh:H16_A1606 hypothetical membrane associated protein YP_001768163.1 PFAM: von Willebrand factor type A; KEGG: rba:RB9502 hypothetical protein YP_001768164.1 KEGG: bxe:Bxe_A2139 hypothetical TPR domain protein YP_001768165.1 PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rba:RB9505 hypothetical protein YP_001768166.1 KEGG: reu:Reut_A2886 hypothetical protein YP_001768167.1 PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: pfl:PFL_3450 hypothetical protein YP_001768168.1 PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: reh:H16_B0525 hypothetical protein YP_001768169.1 PFAM: secretion protein HlyD family protein; KEGG: nha:Nham_2977 secretion protein HlyD YP_001768170.1 KEGG: xau:Xaut_3415 hypothetical protein YP_001768171.1 KEGG: xau:Xaut_2298 tetratricopeptide TPR_2 repeat protein YP_001768173.1 PFAM: protein of unknown function DUF937; KEGG: mex:Mext_1884 protein of unknown function DUF937 YP_001768174.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: nha:Nham_3058 transposase IS116/IS110/IS902 YP_001768177.1 KEGG: mex:Mext_1876 hypothetical protein YP_001768178.1 KEGG: aeh:Mlg_1066 hypothetical protein YP_001768182.1 PFAM: Resolvase domain; KEGG: bja:bll5010 putative resolvase YP_001768183.1 KEGG: nar:Saro_2712 hypothetical protein YP_001768186.1 PFAM: MmgE/PrpD family protein; KEGG: nca:Noca_0040 MmgE/PrpD family protein YP_001768187.1 KEGG: mex:Mext_4877 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: regulatory protein LuxR; response regulator receiver; GAF domain protein; Sigma-70 region 4 type 2; PAS fold-3 domain protein; SMART: PAS domain containing protein YP_001768188.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: mex:Mext_4876 cyclic nucleotide-binding YP_001768190.1 PFAM: pyruvate carboxyltransferase; KEGG: psa:PST_1716 hydroxymethylglutaryl-CoA lyase YP_001768191.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: pth:PTH_0851 alcohol dehydrogenase YP_001768192.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rrs:RoseRS_0050 formyl-CoA transferase YP_001768193.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mlo:mlr8380 hypothetical protein YP_001768194.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bja:blr2170 probable ABC transporter substrate-binding protein YP_001768195.1 KEGG: mag:amb1041 insertion element IS2A hypothetical 482 kDa protein YP_001768196.1 PFAM: protein of unknown function DUF1275; KEGG: rha:RHA1_ro04188 possible membrane protein YP_001768197.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_001768198.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: dsh:Dshi_1967 catalytic domain of components of various dehydrogenase complexes YP_001768199.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: nmu:Nmul_A0515 dihydrolipoamide dehydrogenase YP_001768200.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate YP_001768201.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_001768202.1 PFAM: sodium:dicarboxylate symporter; KEGG: bja:blr4298 C4-dicarboxylate transport protein YP_001768203.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: mex:Mext_2640 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001768204.1 KEGG: mex:Mext_3469 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Beta-ketoacyl synthase YP_001768205.1 TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpb:RPB_0508 acetoacetyl-CoA reductase YP_001768206.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dar:Daro_0478 ATP-binding region, ATPase-like:histidine kinase A, N-terminal YP_001768207.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: azo:azo0447 transcriptional regulatory protein YP_001768208.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: mex:Mext_1976 cytochrome bd ubiquinol oxidase subunit I YP_001768209.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: mex:Mext_0702 cytochrome d ubiquinol oxidase, subunit II YP_001768210.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_001768211.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: rsq:Rsph17025_3267 hypothetical protein YP_001768214.1 KEGG: mex:Mext_0493 hypothetical protein YP_001768215.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rle:RL0861 putative alcohol dehydrogenase YP_001768216.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:bll5543 transcriptional regulatory protein YP_001768217.1 PFAM: protein of unknown function DUF302; KEGG: bbt:BBta_1896 hypothetical protein YP_001768219.1 PFAM: protein of unknown function DUF1458; KEGG: aeh:Mlg_2417 protein of unknown function DUF1458 YP_001768220.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mex:Mext_0667 chemotaxis sensory transducer YP_001768222.1 KEGG: kpn:KPN_pKPN5p08190 hypothetical protein YP_001768223.1 KEGG: nha:Nham_4539 purine and other phosphorylases, family 1 YP_001768224.1 PFAM: acyltransferase 3; KEGG: gdi:GDI2971 putative acyltransferase YP_001768226.1 PFAM: helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: scl:sce5529 putative SNF2/RAD54 family helicase YP_001768227.1 PFAM: helix-turn-helix domain protein; KEGG: mex:Mext_1160 helix-turn-helix domain protein YP_001768228.1 KEGG: mex:Mext_1161 type I secretion system ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase YP_001768229.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: mex:Mext_1162 type I secretion membrane fusion protein, HlyD family YP_001768230.1 KEGG: mex:Mext_1163 hypothetical protein YP_001768231.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mex:Mext_0458 RNA polymerase sigma factor, sigma-70 family YP_001768233.1 KEGG: mex:Mext_0456 hypothetical protein YP_001768234.1 PFAM: protein of unknown function DUF1236; KEGG: mex:Mext_0457 protein of unknown function DUF1236 YP_001768235.1 PFAM: glycosyl transferase group 1; KEGG: mex:Mext_1373 glycosyl transferase group 1 YP_001768237.1 KEGG: mex:Mext_1179 hypothetical protein YP_001768238.1 KEGG: mms:mma_2023 Fe2+-dicitrate sensor, membrane component YP_001768240.1 PFAM: cytochrome c class I; KEGG: mex:Mext_0924 cytochrome c class I YP_001768241.1 KEGG: sus:Acid_6276 hypothetical protein YP_001768242.1 KEGG: xau:Xaut_0293 translation initiation factor IF-2 YP_001768244.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: nha:Nham_0349 periplasmic sensor hybrid histidine kinase YP_001768246.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: mex:Mext_0779 5-formyltetrahydrofolate cyclo-ligase YP_001768247.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: mlo:mlr5693 aspartate aminotransferase YP_001768248.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: dps:DP0346 hypothetical protein YP_001768249.1 KEGG: reu:Reut_C6091 NAD-dependent epimerase/dehydratase:short-chain dehydrogenase/reductase SDR YP_001768250.1 PFAM: Na+/solute symporter; KEGG: bpu:BPUM_2976 SSS family solute:sodium (Na+) symporter YP_001768251.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rpc:RPC_0847 transcriptional regulator, AraC family YP_001768252.1 KEGG: pat:Patl_3108 hypothetical protein YP_001768253.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; cyclase/dehydrase; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; carbon monoxide dehydrogenase subunit G; KEGG: bja:blr3533 putative carbon monoxide dehydrogenase large chain YP_001768254.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: bja:blr3534 putative carbon monoxide dehydrogenase medium chain YP_001768255.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: acr:Acry_0670 (2Fe-2S)-binding domain protein YP_001768256.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rpc:RPC_0851 AMP-dependent synthetase and ligase YP_001768257.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: acr:Acry_0672 enoyl-CoA hydratase/isomerase YP_001768258.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A2078 major facilitator superfamily (MFS) metabolite/H+ symporter YP_001768259.1 PFAM: conserved hypothetical protein; KEGG: mes:Meso_1092 hypothetical protein YP_001768260.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: dsh:Dshi_3714 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_001768261.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A2070 transcriptional regulator, LysR family YP_001768262.1 TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: dsh:Dshi_3716 UbiD family decarboxylase YP_001768263.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: bja:blr0367 putative glucose dehydrogenase (acceptor) YP_001768264.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bja:bll2825 transcriptional regulatory protein YP_001768265.1 PFAM: oxidoreductase domain protein; KEGG: pol:Bpro_3819 oxidoreductase-like YP_001768266.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_3818 ABC transporter related YP_001768267.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3817 binding-protein-dependent transport systems inner membrane component YP_001768268.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3816 binding-protein-dependent transport systems inner membrane component YP_001768269.1 PFAM: extracellular solute-binding protein family 1; KEGG: pol:Bpro_3815 extracellular solute-binding protein, family 1 YP_001768270.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_001768271.1 KEGG: mes:Meso_1245 hypothetical protein YP_001768272.1 KEGG: rpe:RPE_4910 TRAP transporter solute receptor, TAXI family YP_001768273.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: swi:Swit_2633 transcriptional regulator, LysR family YP_001768274.1 TIGRFAM: benzoate 1,2-dioxygenase, large subunit; PFAM: Rieske [2Fe-2S] domain protein; Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like; KEGG: xau:Xaut_1134 ring hydroxylating dioxygenase alpha subunit YP_001768275.1 KEGG: pae:PA2517 toluate 1,2-dioxygenase beta subunit; TIGRFAM: benzoate 1,2-dioxygenase, small subunit; PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit YP_001768276.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: pfl:PFL_3856 benzoate 1,2-dioxygenase ferredoxin reductase subunit YP_001768277.1 catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol YP_001768278.1 TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: xau:Xaut_4357 catechol 1,2-dioxygenase YP_001768279.1 TIGRFAM: muconate and chloromuconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: dac:Daci_1870 muconate and chloromuconate cycloisomerase YP_001768280.1 KEGG: azc:AZC_2339 methylmuconolactone isomerase; TIGRFAM: muconolactone delta-isomerase; PFAM: Muconolactone delta-isomerase YP_001768281.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: reu:Reut_B5860 general substrate transporter:major facilitator superfamily MFS_1 YP_001768282.1 PFAM: protein of unknown function DUF849; KEGG: mex:Mext_1354 protein of unknown function DUF849 YP_001768283.1 KEGG: atc:AGR_L_563 hypothetical protein YP_001768284.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: vei:Veis_2899 transcriptional regulator, GntR family YP_001768285.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: mpt:Mpe_A3652 hypothetical protein YP_001768286.1 KEGG: xau:Xaut_5024 extracellular ligand-binding receptor YP_001768287.1 PFAM: coenzyme A transferase; KEGG: reu:Reut_C6427 coenzyme A transferase YP_001768288.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rxy:Rxyl_1762 enoyl-CoA hydratase/isomerase YP_001768289.1 KEGG: azc:AZC_4513 ABC transporter substrate binding protein YP_001768290.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bja:blr5140 hypothetical protein YP_001768291.1 PFAM: LamB/YcsF family protein; KEGG: rru:Rru_A1504 LamB/YcsF YP_001768292.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_001768293.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: acr:Acry_3533 pyridoxal-5'-phosphate-dependent enzyme, beta subunit YP_001768294.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: acr:Acry_3532 putative transcriptional regulator, AsnC family YP_001768295.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: nar:Saro_2765 transcriptional regulator, LysR family YP_001768296.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bxe:Bxe_B0926 putative oxidoreductase YP_001768297.1 PFAM: Glutathione S-transferase domain; KEGG: bxe:Bxe_B0925 putative glutathione S-transferase YP_001768298.1 PFAM: regulatory protein TetR; KEGG: mex:Mext_4357 regulatory protein TetR YP_001768299.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mex:Mext_4358 efflux transporter, RND family, MFP subunit YP_001768300.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: mex:Mext_4359 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family YP_001768302.1 KEGG: pau:PA14_40100 hypothetical protein YP_001768303.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: bbt:BBta_3387 putative RNA polymerase ECF-type sigma factor YP_001768304.1 PFAM: Patatin; KEGG: bra:BRADO2451 hypothetical protein YP_001768306.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mes:Meso_2462 transcriptional regulator, LysR family YP_001768307.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: gdi:GDI2772 putative alkyl hydroperoxide reductase YP_001768308.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: reh:H16_A1812 hypothetical membrane associated protein YP_001768309.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll2771 hypothetical protein YP_001768311.1 KEGG: mex:Mext_0047 hypothetical protein YP_001768312.1 KEGG: bja:bll6265 hypothetical protein YP_001768313.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: rpb:RPB_2517 NADPH-dependent FMN reductase YP_001768314.1 KEGG: bbr:BB1133 hypothetical protein YP_001768315.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rpb:RPB_3417 transcriptional regulator, AraC family YP_001768316.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mxa:MXAN_6157 transcriptional regulator, LysR family YP_001768317.1 KEGG: nha:Nham_2497 putative cytochrome P460 YP_001768319.1 KEGG: mex:Mext_3857 hypothetical protein YP_001768320.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: mex:Mext_3858 NADP oxidoreductase coenzyme F420-dependent YP_001768321.1 PFAM: aldo/keto reductase; KEGG: mex:Mext_3859 aldo/keto reductase YP_001768323.1 TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB; KEGG: mex:Mext_1559 protein-export protein SecB YP_001768324.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: mex:Mext_1560 import inner membrane translocase subunit Tim44 YP_001768325.1 PFAM: MltA domain protein; 3D domain protein; KEGG: mex:Mext_1561 MltA domain protein YP_001768326.1 PFAM: Smr protein/MutS2; KEGG: mex:Mext_1562 Smr protein/MutS2 YP_001768327.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_001768328.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; KEGG: bja:blr4813 hypothetical protein YP_001768329.1 PFAM: NHL repeat containing protein; KEGG: mbn:Mboo_1601 NHL repeat containing protein YP_001768330.1 KEGG: mex:Mext_4505 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001768333.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: mex:Mext_0862 ATPase associated with various cellular activities AAA_3 YP_001768334.1 KEGG: mex:Mext_0863 hypothetical protein YP_001768335.1 KEGG: mex:Mext_0864 hypothetical protein YP_001768336.1 PFAM: von Willebrand factor type A; KEGG: mex:Mext_0865 von Willebrand factor type A YP_001768337.1 SMART: von Willebrand factor type A; KEGG: mex:Mext_0866 von Willebrand factor type A YP_001768338.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: mex:Mext_0867 tetratricopeptide TPR_2 repeat protein YP_001768339.1 KEGG: mex:Mext_0868 hypothetical protein YP_001768340.1 PFAM: penicillin-binding protein transpeptidase; beta-lactamase; KEGG: nha:Nham_0446 beta-lactamase YP_001768341.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: rru:Rru_A3668 hypothetical protein YP_001768342.1 KEGG: mex:Mext_2241 hypothetical protein YP_001768343.1 PFAM: electron transport protein SCO1/SenC; KEGG: nwi:Nwi_0144 electron transport protein SCO1/SenC YP_001768345.1 PFAM: Ricin B lectin; Kelch repeat-containing protein; Domain of unknown function DUF1929; KEGG: bpl:BURPS1106A_A2233 ricin-type beta-trefoil lectin domain/galactose oxidase domain protein YP_001768346.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_001768347.1 KEGG: mex:Mext_1574 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; PFAM: transferase hexapeptide repeat containing protein YP_001768348.1 PFAM: cyclic nucleotide-binding; KEGG: mex:Mext_1575 cyclic nucleotide-binding YP_001768349.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mex:Mext_1576 response regulator receiver YP_001768350.1 PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: bov:BOV_A0588 putative exonuclease YP_001768351.1 KEGG: mex:Mext_1577 hypothetical protein YP_001768353.1 PFAM: alanine racemase domain protein; KEGG: mex:Mext_1578 alanine racemase domain protein YP_001768354.1 TIGRFAM: leucyl-tRNA synthetase; KEGG: mex:Mext_1579 leucyl-tRNA synthetase YP_001768355.1 KEGG: mex:Mext_1588 hypothetical protein YP_001768356.1 required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA YP_001768357.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: mex:Mext_1586 ParB-like partition protein YP_001768358.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: mex:Mext_1585 cobyrinic acid ac-diamide synthase YP_001768359.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: mex:Mext_1584 methyltransferase GidB YP_001768360.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_001768361.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_001768362.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space YP_001768363.1 KEGG: mex:Mext_2857 hypothetical protein YP_001768364.1 PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mex:Mext_2858 cystathionine gamma-synthase YP_001768365.1 PFAM: TspO/MBR family protein; KEGG: mex:Mext_2859 TspO/MBR family protein YP_001768366.1 PFAM: protein of unknown function DUF344; KEGG: bja:bll2813 hypothetical protein YP_001768367.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: mex:Mext_0211 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding YP_001768368.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bra:BRADO0449 isoquinoline 1-oxidoreductase alpha subunit YP_001768370.1 PFAM: aldo/keto reductase; KEGG: mex:Mext_2023 2,5-didehydrogluconate reductase YP_001768371.1 KEGG: rpb:RPB_3615 UreA/short-chain binding protein of ABC transporter YP_001768375.1 TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: mex:Mext_0873 methionine-R-sulfoxide reductase YP_001768376.1 PFAM: ribonuclease BN; KEGG: mex:Mext_0874 ribonuclease BN YP_001768377.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: mex:Mext_3131 6-phosphogluconate dehydrogenase NAD-binding YP_001768378.1 KEGG: mex:Mext_4373 hypothetical protein YP_001768379.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal YP_001768380.1 KEGG: mex:Mext_2669 hypothetical protein YP_001768381.1 SMART: extracellular solute-binding protein family 3; KEGG: bmb:BruAb2_0896 hypothetical ABC transporter, periplasmic binding protein YP_001768382.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xau:Xaut_3212 binding-protein-dependent transport systems inner membrane component YP_001768383.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:bll6488 ABC transporter ATP-binding protein YP_001768385.1 KEGG: pfl:PFL_5707 PepSY-associated membrane protein YP_001768386.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mex:Mext_1595 TonB-dependent siderophore receptor YP_001768387.1 PFAM: protein of unknown function DUF1052; KEGG: mex:Mext_2667 protein of unknown function DUF1052 YP_001768388.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001768389.1 SMART: AAA ATPase; KEGG: bja:bll4708 probable ATP-binding protein YP_001768390.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: mex:Mext_2671 phenazine biosynthesis protein PhzF family YP_001768391.1 PFAM: NUDIX hydrolase; KEGG: mex:Mext_2672 NUDIX hydrolase YP_001768392.1 KEGG: mlo:msr5347 hypothetical protein YP_001768393.1 KEGG: mex:Mext_2673 hypothetical protein YP_001768394.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_001768395.1 PFAM: Integrase catalytic region; KEGG: sen:SACE_5091 transposase YP_001768396.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: bbt:BBta_1631 putative transcriptional regulator, Crp/Fnr family YP_001768397.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: mex:Mext_2395 glucose-1-phosphate thymidylyltransferase YP_001768398.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pae:PA2319 probable transposase YP_001768399.1 PFAM: polysaccharide export protein; Protein of unknown function DUF1972; KEGG: tbd:Tbd_1781 glycosyltransferase, RfaG YP_001768400.1 PFAM: glycosyl transferase group 1; KEGG: mlo:mll2084 hypothetical protein YP_001768401.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: sme:SMb21070 putative MPA1 family auxiliary surface saccharide export protein, similar to chain-length determination proteins YP_001768402.1 KEGG: mlo:mll2088 hypothetical protein YP_001768403.1 KEGG: mlo:mlr2091 hypothetical protein YP_001768404.1 KEGG: bam:Bamb_6484 ATP-grasp enzyme-like protein YP_001768406.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: ret:RHE_PA00078 putative insertion sequence ATP-binding protein, IS21 family YP_001768407.1 PFAM: Integrase catalytic region; KEGG: swi:Swit_5106 integrase, catalytic region YP_001768410.1 KEGG: rpe:RPE_4008 hypothetical protein YP_001768411.1 KEGG: rpe:RPE_4007 hypothetical protein YP_001768412.1 PFAM: transposase IS3/IS911 family protein; KEGG: nha:Nham_3008 transposase IS3/IS911 YP_001768413.1 PFAM: IS66 Orf2 family protein; KEGG: azc:AZC_1284 putative transposase YP_001768414.1 KEGG: rpa:RPA2983 hypothetical protein YP_001768415.1 KEGG: gdi:GDI1636 putative transposase protein YP_001768416.1 KEGG: nha:Nham_3061 hypothetical protein YP_001768417.1 PFAM: integrase family protein; KEGG: ret:RHE_CH00241 putative recombinase protein, phage integrase family YP_001768420.1 KEGG: rle:pRL110111 hypothetical protein YP_001768421.1 PFAM: Resolvase domain; KEGG: rpc:RPC_3656 resolvase-like YP_001768423.1 PFAM: ParB domain protein nuclease YP_001768425.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: rpe:RPE_0558 phage integrase family protein YP_001768426.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: gdi:GDI3776 putative cytosine-specifi methyltransferase DdeI YP_001768427.1 KEGG: gdi:GDI3777 hypothetical protein YP_001768428.1 PFAM: ATP-binding region ATPase domain protein; KEGG: gdi:GDI3778 hypothetical protein YP_001768429.1 TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: gdi:GDI3779 putative repair endonuclease YP_001768430.1 KEGG: pap:PSPA7_2518 hypothetical protein YP_001768431.1 KEGG: pap:PSPA7_2519 hypothetical protein YP_001768432.1 KEGG: pap:PSPA7_2520 hypothetical protein YP_001768433.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: aha:AHA_1077 modification methylase DdeI YP_001768434.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: mca:MCA3092 uracil-DNA glycosylase YP_001768435.1 PFAM: Integrase catalytic region; KEGG: sen:SACE_5091 transposase YP_001768439.1 KEGG: aba:Acid345_4271 hypothetical protein YP_001768440.1 KEGG: pna:Pnap_4163 putative lipoprotein YP_001768441.1 KEGG: xau:Xaut_0217 hypothetical protein YP_001768443.1 KEGG: ana:all7065 unknown protein YP_001768446.1 KEGG: aae:aq_1855 DNA polymerase III gamma subunit; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase YP_001768447.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: ret:RHE_PA00078 putative insertion sequence ATP-binding protein, IS21 family YP_001768448.1 PFAM: Integrase catalytic region; KEGG: swi:Swit_5106 integrase, catalytic region YP_001768449.1 PFAM: glycoside hydrolase family 5; KEGG: mfa:Mfla_2014 glycoside hydrolase, family 5 YP_001768451.1 PFAM: glycoside hydrolase family 5; KEGG: xcb:XC_0026 cellulase YP_001768452.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bbt:BBta_1076 putative oxidoreductase YP_001768453.1 KEGG: mex:Mext_0481 integrase catalytic region YP_001768454.1 KEGG: mag:amb0045 hypothetical protein YP_001768455.1 KEGG: mlo:mll2083 hypothetical protein YP_001768456.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: azc:AZC_1334 putative pyridoxine 5'-phosphate oxidase protein YP_001768457.1 PFAM: alpha/beta hydrolase fold; KEGG: ret:RHE_PE00174 putative alpha/beta hydrolase protein YP_001768458.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: azc:AZC_1336 transcriptional regulator YP_001768459.1 KEGG: hha:Hhal_1627 dienelactone hydrolase YP_001768460.1 PFAM: regulatory protein GntR HTH; KEGG: mex:Mext_1218 GntR domain protein YP_001768462.1 PFAM: CoA-binding domain protein; KEGG: bra:BRADO4953 conserved hypothetical protein with a putative CoA binding domain; putative succinyl-CoA (or acyl-CoA) synthetase YP_001768463.1 KEGG: sat:SYN_01077 sensor proteinLuxQ; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; GAF domain protein YP_001768464.1 PFAM: response regulator receiver; KEGG: sus:Acid_4296 response regulator receiver protein YP_001768465.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; response regulator receiver; KEGG: bja:blr2288 two-component hybrid sensor and regulator YP_001768466.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; Cupin 2 conserved barrel domain protein; KEGG: bvi:Bcep1808_6704 cupin 2, conserved barrel domain protein YP_001768467.1 PFAM: Tetratricopeptide TPR_4; KEGG: bvi:Bcep1808_6705 hypothetical protein YP_001768468.1 PFAM: major facilitator superfamily MFS_1; KEGG: xcv:XCV2334 putative major facilitator superfamily protein YP_001768469.1 KEGG: mex:Mext_2525 hypothetical protein YP_001768470.1 KEGG: mex:Mext_4704 hypothetical protein YP_001768472.1 KEGG: mex:Mext_1897 hypothetical protein YP_001768473.1 PFAM: K potassium transporter; KEGG: mex:Mext_1122 K potassium transporter YP_001768475.1 PFAM: CsbD family protein; KEGG: mex:Mext_0364 CsbD family protein YP_001768477.1 KEGG: sun:SUN_0062 hypothetical protein YP_001768478.1 KEGG: syx:SynWH7803_2355 hypothetical protein YP_001768479.1 KEGG: mex:Mext_0532 hypothetical protein YP_001768480.1 KEGG: dar:Daro_2929 hypothetical protein YP_001768481.1 KEGG: mex:Mext_4257 hypothetical protein YP_001768482.1 KEGG: bja:blr0274 hypothetical protein YP_001768483.1 PFAM: protein of unknown function DUF1003; KEGG: mex:Mext_1803 protein of unknown function DUF1003 YP_001768484.1 KEGG: rpc:RPC_0081 protein of unknown function DUF201 YP_001768485.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: nwi:Nwi_0898 NAD-dependent epimerase/dehydratase YP_001768486.1 KEGG: bja:bsr4462 hypothetical protein YP_001768488.1 PFAM: protein of unknown function DUF214; KEGG: bra:BRADO0993 putative ABC transporter, permease protein YP_001768489.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbt:BBta_7063 putative ABC transporter, ATP-binding protein YP_001768490.1 KEGG: ccr:CC_3015 response regulator YP_001768492.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001768493.1 KEGG: mex:Mext_1136 acetate and butyrate kinase YP_001768494.1 KEGG: amr:AM1_1534 hypothetical protein YP_001768495.1 KEGG: mex:Mext_0048 hypothetical protein YP_001768496.1 KEGG: mex:Mext_4257 hypothetical protein YP_001768497.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mex:Mext_1140 efflux transporter, RND family, MFP subunit YP_001768498.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: mex:Mext_1139 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family YP_001768499.1 PFAM: protein of unknown function DUF344; KEGG: mex:Mext_1138 protein of unknown function DUF344 YP_001768500.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_001768501.1 KEGG: xau:Xaut_3253 hypothetical protein YP_001768502.1 KEGG: mex:Mext_0054 hypothetical protein YP_001768503.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: mex:Mext_0053 acetate kinase YP_001768504.1 PFAM: phosphate acetyl/butaryl transferase; KEGG: mex:Mext_0052 phosphate butyryltransferase YP_001768505.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mex:Mext_4256 GCN5-related N-acetyltransferase YP_001768507.1 KEGG: nha:Nham_0867 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase YP_001768508.1 KEGG: bja:bll3462 3-oxoadipate CoA-transferase subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase YP_001768509.1 KEGG: mex:Mext_0047 hypothetical protein YP_001768510.1 KEGG: mex:Mext_0050 hypothetical protein YP_001768511.1 KEGG: mex:Mext_0042 hypothetical protein YP_001768512.1 KEGG: mex:Mext_0044 hypothetical protein YP_001768513.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: mex:Mext_0043 helix-turn-helix-domain containing protein AraC type YP_001768514.1 KEGG: bbt:BBta_0348 putative cytochrome c precursor YP_001768515.1 PFAM: sodium/hydrogen exchanger; KEGG: aha:AHA_1473 Na(+)/H(+) antiporter YP_001768516.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: bja:blr0533 hypothetical protein YP_001768517.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: mex:Mext_0043 helix-turn-helix-domain containing protein AraC type YP_001768518.1 KEGG: mex:Mext_3805 hypothetical protein YP_001768519.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: mex:Mext_0049 sulphate transporter YP_001768520.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: bja:blr3474 probable Orn/Lys/Arg family decarboxylase YP_001768521.1 TIGRFAM: YidE/YbjL duplication; PFAM: TrkA-C domain protein; YidE/YbjL duplication domain protein; KEGG: bja:bll3476 hypothetical membrane protein YP_001768522.1 KEGG: mex:Mext_0041 hypothetical protein YP_001768524.1 KEGG: bbt:BBta_4860 putative luciferase-like protein, putative alkanesulfonate monooxygenase YP_001768525.1 KEGG: xau:Xaut_1129 hypothetical protein YP_001768526.1 PFAM: NLPA lipoprotein; KEGG: bxe:Bxe_B1561 putative outer membrane lipoprotein YP_001768527.1 PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: mex:Mext_3336 acyl-CoA dehydrogenase type 2 domain YP_001768528.1 PFAM: luciferase family protein; KEGG: mex:Mext_3342 alkanesulfonate monooxygenase YP_001768529.1 TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: mex:Mext_3341 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein YP_001768531.1 PFAM: ApbE family lipoprotein; KEGG: xau:Xaut_3394 ApbE family lipoprotein YP_001768532.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; Oxidoreductase FAD-binding domain protein; KEGG: xau:Xaut_4965 oxidoreductase FAD/NAD(P)-binding domain protein YP_001768533.1 KEGG: xau:Xaut_4964 hypothetical protein YP_001768534.1 KEGG: xau:Xaut_3397 hypothetical protein YP_001768535.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: xau:Xaut_3398 integral membrane sensor signal transduction histidine kinase YP_001768536.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xau:Xaut_3399 two component transcriptional regulator, winged helix family YP_001768537.1 KEGG: xau:Xaut_4960 hypothetical protein YP_001768538.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: xau:Xaut_4898 ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_001768539.1 PFAM: UspA domain protein; KEGG: xau:Xaut_3179 UspA domain protein YP_001768540.1 KEGG: aav:Aave_2582 hypothetical protein YP_001768541.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: xau:Xaut_2109 general secretion pathway protein G YP_001768542.1 KEGG: acr:Acry_0891 hypothetical protein YP_001768544.1 KEGG: xoo:XOO0852 general secretion pathway protein J YP_001768545.1 KEGG: xau:Xaut_2113 putative general secretion pathway protein K YP_001768546.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_0344 binding-protein-dependent transport systems inner membrane component YP_001768547.1 PFAM: extracellular solute-binding protein family 5; KEGG: mex:Mext_0343 extracellular solute-binding protein family 5 YP_001768548.1 PFAM: extracellular solute-binding protein family 5; KEGG: mex:Mext_0342 extracellular solute-binding protein family 5 YP_001768549.1 PFAM: Sel1 domain protein repeat-containing protein; peptidase C14 caspase catalytic subunit p20; KEGG: mgm:Mmc1_2003 Sel1 domain protein repeat-containing protein YP_001768550.1 PFAM: cytochrome c class I; KEGG: mex:Mext_0341 cytochrome c class I YP_001768551.1 KEGG: mex:Mext_0340 3-deoxy-D-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase YP_001768552.1 PFAM: prephenate dehydratase; KEGG: mex:Mext_0339 prephenate dehydratase YP_001768553.1 TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; KEGG: mex:Mext_2967 cytidine deaminase YP_001768554.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation YP_001768555.1 catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis YP_001768556.1 PFAM: Animal haem peroxidase; KEGG: nmu:Nmul_A0615 Animal heme peroxidase YP_001768557.1 KEGG: pnu:Pnuc_2050 hypothetical protein YP_001768558.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pnu:Pnuc_1328 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase YP_001768559.1 SMART: extracellular solute-binding protein family 3; KEGG: pol:Bpro_3873 extracellular solute-binding protein, family 3 YP_001768560.1 KEGG: swi:Swit_4130 hypothetical protein YP_001768561.1 PFAM: Acetamidase/Formamidase; KEGG: bbt:BBta_5975 putative acetamidase/formamidase family protein YP_001768562.1 KEGG: mex:Mext_1996 phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II YP_001768564.1 PFAM: Ferric reductase domain protein transmembrane component domain; KEGG: xau:Xaut_3512 ferric reductase domain protein transmembrane component domain YP_001768565.1 KEGG: mex:Mext_4643 hypothetical protein YP_001768566.1 PFAM: PfkB domain protein; KEGG: mex:Mext_4645 PfkB domain protein YP_001768567.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA0056 sn-glycerol 3-phosphate transport system, integral membrane protein YP_001768568.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: atc:AGR_C_533 sn-Glycerol-3-phosphate transport ATP-binding protein YP_001768569.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: azc:AZC_2799 putative acyl-CoA transferase YP_001768570.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: vei:Veis_0789 thiamine pyrophosphate enzyme domain protein TPP-binding YP_001768571.1 PFAM: fatty acid hydroxylase; KEGG: bja:blr1443 hypothetical protein YP_001768572.1 PFAM: Creatininase; KEGG: mlo:mlr3472 hypothetical protein YP_001768573.1 PFAM: extracellular solute-binding protein family 1; KEGG: rpe:RPE_0440 extracellular solute-binding protein, family 1 YP_001768574.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bra:BRADO0105 putative sugar ABC transporter (permease protein); putative glycerol 3-phosphate transport protein, UgpA-like protein YP_001768575.1 PFAM: PRC-barrel domain protein; KEGG: mex:Mext_2854 PRC-barrel domain protein YP_001768576.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bbt:BBta_2451 glutaryl-CoA dehydrogenase YP_001768577.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bbt:BBta_3263 putative class I glutamine amidotransferase-like , transcriptional regulator protein AraC/XylS family YP_001768578.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_001768579.1 PFAM: N-formylglutamate amidohydrolase; KEGG: ccr:CC_0958 formiminoglutamase YP_001768580.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_001768581.1 KEGG: bbt:BBta_6452 imidazolonepropionase; TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; Amidohydrolase 3 YP_001768582.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate YP_001768583.1 TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: bja:blr6245 transcriptional regulatory protein YP_001768584.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: mex:Mext_2687 uracil-DNA glycosylase superfamily YP_001768585.1 KEGG: mex:Mext_2688 putative membrane protein of unknown function YP_001768586.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mex:Mext_2689 histidine kinase YP_001768587.1 PFAM: protein of unknown function DUF1007; KEGG: mex:Mext_1404 protein of unknown function DUF1007 YP_001768588.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: mex:Mext_2690 heavy metal translocating P-type ATPase YP_001768589.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; KEGG: mex:Mext_0113 PAS sensor protein YP_001768590.1 PFAM: Indigoidine synthase A family protein; KEGG: mes:Meso_1265 indigoidine synthase A like protein YP_001768591.1 PFAM: UspA domain protein; KEGG: mex:Mext_1765 UspA domain protein YP_001768593.1 PFAM: NUDIX hydrolase; NADH pyrophosphatase-like ; Zinc ribbon NADH pyrophosphatase; KEGG: mex:Mext_4447 NUDIX hydrolase YP_001768594.1 PFAM: histidine triad (HIT) protein; KEGG: mex:Mext_4448 histidine triad (HIT) protein YP_001768595.1 PFAM: cyclic nucleotide-binding; KEGG: mex:Mext_0576 cyclic nucleotide-binding YP_001768597.1 KEGG: mes:Meso_2692 hypothetical protein YP_001768598.1 KEGG: mes:Meso_2691 nucleotidyl transferase YP_001768599.1 PFAM: glycosyl transferase group 1; KEGG: scl:sce6790 putative glycosyltransferase YP_001768600.1 KEGG: ade:Adeh_1016 glycosyl transferase, group 1 YP_001768601.1 PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: scl:sce1970 hypothetical protein YP_001768602.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_001768603.1 TIGRFAM: conserved hypothetical selenoprotein; PFAM: Selenoprotein W-related; KEGG: mex:Mext_2021 conserved hypothetical selenoprotein YP_001768604.1 KEGG: mex:Mext_2022 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001768605.1 PFAM: thioesterase superfamily protein; KEGG: mex:Mext_3395 thioesterase superfamily protein YP_001768606.1 KEGG: bbt:BBta_4282 hypothetical protein YP_001768608.1 PFAM: Amidase; KEGG: rru:Rru_A0983 amidase YP_001768609.1 KEGG: rsh:Rsph17029_1399 putative glucose/sorbosone dehydrogenase YP_001768610.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: mex:Mext_4438 phospholipase D/transphosphatidylase YP_001768611.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mex:Mext_4437 endonuclease/exonuclease/phosphatase YP_001768612.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_001768613.1 KEGG: mex:Mext_4778 uncharacterized relative of glutathione S-transferase MAPEG superfamily-like protein YP_001768614.1 KEGG: mex:Mext_0869 hypothetical protein YP_001768615.1 PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: mex:Mext_0325 exonuclease RNase T and DNA polymerase III YP_001768616.1 KEGG: mex:Mext_4642 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase YP_001768617.1 PFAM: extracellular solute-binding protein family 5; KEGG: bra:BRADO1743 periplasmic dipeptide transport protein precursor (dipeptide-binding protein) (DBP) (ABC transporter) YP_001768618.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1953 binding-protein-dependent transport systems inner membrane component YP_001768619.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bra:BRADO1741 dipeptide transport system permease protein DppC (ABC transporter) YP_001768620.1 KEGG: pol:Bpro_2814 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001768621.1 Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides YP_001768622.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: atc:AGR_L_911 hypothetical protein YP_001768623.1 PFAM: Hemolysin-type calcium-binding region; metallophosphoesterase; KEGG: atc:AGR_L_909 hypothetical protein YP_001768624.1 PFAM: Hemolysin-type calcium-binding region; Endonuclease/exonuclease/phosphatase; KEGG: amr:AM1_1876 5'-nucleotidase/2',3'-cyclic phosphodiesterase, putative YP_001768625.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pmy:Pmen_1953 helix-turn-helix-domain containing protein, AraC type YP_001768626.1 PFAM: AMP-dependent synthetase and ligase; KEGG: olu:OSTLU_37273 predicted protein YP_001768627.1 PFAM: PEBP family protein; KEGG: pmy:Pmen_1952 PEBP family protein YP_001768628.1 PFAM: Hemolysin-type calcium-binding region; 5'-Nucleotidase domain protein; KEGG: cph:Cpha266_1750 5'-nucleotidase domain protein YP_001768629.1 KEGG: sme:SMb20082 hypothetical protein YP_001768630.1 PFAM: metallophosphoesterase; KEGG: ret:RHE_PB00047 putative serine/threonine-specific protein phosphatase protein YP_001768631.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mex:Mext_1019 short-chain dehydrogenase/reductase SDR YP_001768632.1 PFAM: extracellular solute-binding protein family 3; KEGG: pna:Pnap_2071 extracellular solute-binding protein, family 3 YP_001768633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xau:Xaut_0176 ABC transporter related YP_001768634.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xau:Xaut_0175 polar amino acid ABC transporter, inner membrane subunit YP_001768635.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xau:Xaut_0174 polar amino acid ABC transporter, inner membrane subunit YP_001768636.1 TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: azc:AZC_3334 2-deoxy-D-gluconate 3-dehydrogenase YP_001768637.1 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate YP_001768638.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bbt:BBta_5741 putative transcriptional regulator, GntR family YP_001768639.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: kpn:KPN_00361 hypothetical protein YP_001768640.1 KEGG: sus:Acid_4610 transcriptional regulator, AraC family YP_001768641.1 PFAM: ABC-2 type transporter; KEGG: mex:Mext_0379 ABC-2 type transporter YP_001768642.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_0380 ABC transporter related YP_001768643.1 PFAM: regulatory protein LuxR; KEGG: bja:blr7275 transcriptional regulatory protein YP_001768644.1 PFAM: PDZ/DHR/GLGF domain protein; KEGG: bja:blr7274 serine protease YP_001768645.1 KEGG: mex:Mext_2221 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_001768646.1 PFAM: glycosyl transferase group 1; KEGG: mex:Mext_2224 glycosyl transferase group 1 YP_001768647.1 PFAM: glycosyl transferase group 1; KEGG: mex:Mext_2225 glycosyl transferase group 1 YP_001768649.1 PFAM: Integrase catalytic region; KEGG: sen:SACE_5091 transposase YP_001768650.1 TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: gdi:GDI0063 hypothetical protein YP_001768651.1 TIGRFAM: CRISPR-associated protein, Csd1 family; PFAM: CRISPR-associated protein CT1133; KEGG: gdi:GDI0062 hypothetical protein YP_001768652.1 TIGRFAM: CRISPR-associated protein, CT1132 family; CRISPR-associated protein, Csd2 family; PFAM: CRISPR-associated protein TM1801; KEGG: rru:Rru_A0831 CRISPR-associated TM1801 family protein YP_001768653.1 TIGRFAM: CRISPR-associated protein Cas2; KEGG: gdi:GDI0058 hypothetical protein YP_001768654.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xau:Xaut_2927 transcriptional regulator, LysR family YP_001768655.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rpe:RPE_2876 TRAP dicarboxylate transporter, DctP subunit YP_001768656.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bpt:Bpet4363 putative short chain dehydrogenase YP_001768657.1 PFAM: ribulose bisphosphate carboxylase large chain; KEGG: acr:Acry_1067 ribulose-bisphosphate carboxylase YP_001768658.1 PFAM: type III effector Hrp-dependent outers; KEGG: acr:Acry_1068 type III effector Hrp-dependent outer protein YP_001768659.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: acr:Acry_1692 short-chain dehydrogenase/reductase SDR YP_001768660.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rpe:RPE_2876 TRAP dicarboxylate transporter, DctP subunit YP_001768661.1 PFAM: alpha/beta hydrolase fold; KEGG: bch:Bcen2424_3948 alpha/beta hydrolase fold YP_001768662.1 PFAM: protein of unknown function DUF849; KEGG: dsh:Dshi_0339 protein of unknown function DUF849 YP_001768663.1 PFAM: alpha/beta hydrolase fold; KEGG: xac:XAC0283 hydrolase YP_001768664.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xau:Xaut_2425 ABC transporter related YP_001768665.1 KEGG: mlo:mlr2267 hypothetical protein YP_001768666.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azc:AZC_4408 amino acid ABC transporter ATP-binding protein YP_001768667.1 PFAM: extracellular solute-binding protein family 3; KEGG: azc:AZC_4407 putative ABC transporter periplasmic solute-binding protein YP_001768668.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_4406 amino acid ABC transporter, permease protein YP_001768669.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_4405 amino acid ABC transporter, permease protein YP_001768670.1 PFAM: GCN5-related N-acetyltransferase; regulatory protein MarR; KEGG: bra:BRADO2365 putative transcriptional regulatory protein, MarR family with a acetyltransferase (GNAT) domain YP_001768671.1 PFAM: ribosomal L11 methyltransferase; Methyltransferase type 11; KEGG: mex:Mext_4479 ribosomal L11 methyltransferase YP_001768673.1 KEGG: mex:Mext_1506 carbonic anhydrase/acetyltransferase isoleucine patch superfamily-like protein YP_001768674.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: mex:Mext_1507 molybdopterin biosynthesis MoaE protein YP_001768675.1 PFAM: protein of unknown function UPF0118; KEGG: mex:Mext_1508 protein of unknown function UPF0118 YP_001768677.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides YP_001768678.1 TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: mex:Mext_4304 folate-binding protein YgfZ YP_001768679.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: pap:PSPA7_4026 hypothetical protein YP_001768680.1 KEGG: mex:Mext_4301 hypothetical protein YP_001768681.1 KEGG: mex:Mext_2778 hypothetical protein YP_001768683.1 KEGG: mex:Mext_4292 enoyl-acyl carrier protein reductase YP_001768684.1 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate YP_001768685.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: mex:Mext_3151 protein of unknown function DUF224 cysteine-rich region domain protein YP_001768686.1 PFAM: SOUL heme-binding protein; KEGG: rpa:RPA3595 hypothetical protein YP_001768687.1 KEGG: pfo:Pfl_1438 hypothetical protein YP_001768688.1 KEGG: pfo:Pfl_1439 hypothetical protein YP_001768689.1 PFAM: FAD linked oxidase domain protein; KEGG: mex:Mext_4787 FAD linked oxidase domain protein YP_001768690.1 KEGG: mex:Mext_4786 membrane protein involved in the export of O-antigen and teichoic acid-like protein YP_001768691.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: mlo:mll2586 hypothetical protein YP_001768692.1 PFAM: CBS domain containing protein; KEGG: azo:azo2142 putative inosine-5'-monophosphate dehydrogenase related protein YP_001768693.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: mex:Mext_4784 Mg2 transporter protein CorA family protein YP_001768694.1 PFAM: chaperonin Cpn10; KEGG: mex:Mext_4783 chaperonin Cpn10 YP_001768695.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: mex:Mext_4782 chaperonin GroEL YP_001768697.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001768699.1 KEGG: mex:Mext_0136 diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001768700.1 KEGG: mex:Mext_0700 PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein YP_001768701.1 PFAM: Heavy metal transport/detoxification protein; KEGG: mex:Mext_0415 heavy metal transport/detoxification protein YP_001768702.1 PFAM: EAL domain protein; KEGG: mex:Mext_0416 EAL domain protein YP_001768703.1 KEGG: fps:FP1629 hypothetical protein YP_001768704.1 PFAM: cytochrome B561; KEGG: rpa:RPA2315 putative nickel-dependent hydrogenase, b-type cytochrome subunit YP_001768705.1 PFAM: cytochrome c prime; KEGG: rpe:RPE_3086 cytochrome c, class II YP_001768706.1 PFAM: histidine kinase HAMP region domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: mag:amb3453 serine phosphatase RsbU, regulator of sigma subunit YP_001768707.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aeh:Mlg_1012 diguanylate cyclase YP_001768708.1 KEGG: aeh:Mlg_1011 hypothetical protein YP_001768709.1 KEGG: aeh:Mlg_1010 hypothetical protein YP_001768710.1 KEGG: bmf:BAB2_0282 Leu/Ile/Val-binding protein family YP_001768711.1 TIGRFAM: preprotein translocase, SecA subunit; PFAM: SEC-C motif domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: mex:Mext_1478 preprotein translocase, SecA subunit YP_001768712.1 KEGG: mex:Mext_3295 hypothetical protein YP_001768713.1 KEGG: bra:BRADO5942 conserved hypothetical protein; putative signal peptide YP_001768715.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_3518 ABC transporter related YP_001768716.1 PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: xau:Xaut_4055 ABC transporter related YP_001768717.1 PFAM: inner-membrane translocator; KEGG: bxe:Bxe_A3707 ABC branched chain amino acid family transporter, inner membrane subunit YP_001768718.1 PFAM: Extracellular ligand-binding receptor; KEGG: xau:Xaut_4053 extracellular ligand-binding receptor YP_001768719.1 PFAM: Activator of Hsp90 ATPase 1 family protein; SMART: regulatory protein ArsR; KEGG: azc:AZC_3703 regulatory protein YP_001768720.1 KEGG: mex:Mext_3265 putative exported protein of unknown function YP_001768721.1 KEGG: mex:Mext_0048 hypothetical protein YP_001768723.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpb:RPB_4257 short-chain dehydrogenase/reductase SDR YP_001768724.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: mex:Mext_1685 cupin 2 conserved barrel domain protein YP_001768725.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: mex:Mext_3274 UTP-glucose-1-phosphate uridylyltransferase YP_001768726.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mex:Mext_3273 UDP-glucose 4-epimerase YP_001768727.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: mex:Mext_3272 lytic murein transglycosylase YP_001768728.1 PFAM: protein of unknown function DUF459; KEGG: mex:Mext_3271 protein of unknown function DUF459 YP_001768729.1 KEGG: bbt:BBta_3692 sensor histidine kinase with PAS and response regulator receiver domains; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001768730.1 PFAM: protein of unknown function DUF599; KEGG: mex:Mext_2999 protein of unknown function DUF599 YP_001768731.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_001768732.1 PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: mex:Mext_3266 glutamate synthase (ferredoxin) YP_001768733.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pla:Plav_1966 threonine aldolase YP_001768734.1 PFAM: band 7 protein; KEGG: syf:Synpcc7942_2412 band 7 protein YP_001768735.1 PFAM: regulatory protein TetR; KEGG: eli:ELI_02830 transcriptional regulator, TetR family protein YP_001768738.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: mex:Mext_4505 PAS sensor protein YP_001768739.1 PFAM: protein of unknown function DUF305; KEGG: rxy:Rxyl_0590 protein of unknown function DUF305 YP_001768740.1 PFAM: manganese containing catalase; KEGG: mex:Mext_2775 catalase YP_001768741.1 KEGG: mex:Mext_4709 hypothetical protein YP_001768742.1 PFAM: regulatory protein AsnC/Lrp family; Helix-turn-helix type 11 domain protein; KEGG: mlo:mlr6779 transcriptional regulator YP_001768743.1 TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: mes:Meso_3963 arginase YP_001768744.1 catalyzes the formation of L-proline from L-ornithine YP_001768745.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: mex:Mext_4032 diguanylate cyclase YP_001768746.1 PFAM: BLUF domain protein; KEGG: mex:Mext_4031 BLUF domain protein YP_001768747.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mex:Mext_4462 RNA polymerase sigma factor, sigma-70 family YP_001768748.1 KEGG: mex:Mext_4259 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001768749.1 PFAM: Glutathione S-transferase domain; KEGG: pol:Bpro_0387 glutathione S-transferase-like YP_001768750.1 KEGG: bpm:BURPS1710b_1545 ABC transporter, periplasmic substrate-binding protein YP_001768751.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: mex:Mext_0784 hypothetical protein YP_001768752.1 PFAM: cyclic nucleotide-binding; KEGG: mex:Mext_0784 hypothetical protein YP_001768753.1 PFAM: cyclic nucleotide-binding; KEGG: mex:Mext_0073 cyclic nucleotide-binding YP_001768755.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: bja:bll0130 hypothetical protein YP_001768756.1 KEGG: azc:AZC_0787 amidase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein YP_001768757.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mex:Mext_1218 GntR domain protein YP_001768759.1 PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_1212 major facilitator superfamily MFS_1 YP_001768760.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mex:Mext_0164 ErfK/YbiS/YcfS/YnhG family protein YP_001768761.1 PFAM: alpha/beta hydrolase fold; KEGG: mex:Mext_1453 alpha/beta hydrolase fold YP_001768762.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; KEGG: bja:blr4813 hypothetical protein YP_001768763.1 PFAM: isochorismatase hydrolase; KEGG: cvi:CV_1320 hypothetical protein YP_001768765.1 KEGG: mex:Mext_4780 hypothetical protein YP_001768766.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: mex:Mext_4779 cobyrinic acid ac-diamide synthase YP_001768767.1 KEGG: mex:Mext_4487 hypothetical protein YP_001768768.1 KEGG: mmr:Mmar10_1758 hypothetical protein YP_001768769.1 PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: mex:Mext_4485 ABC transporter domain protein YP_001768770.1 PFAM: LrgB family protein; KEGG: mex:Mext_3644 LrgB family protein YP_001768771.1 PFAM: LrgA family protein; KEGG: mex:Mext_3645 LrgA family protein YP_001768772.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group YP_001768773.1 PFAM: protein of unknown function DUF1332; KEGG: mex:Mext_3646 protein of unknown function DUF1332 YP_001768774.1 PFAM: CsbD family protein; KEGG: aba:Acid345_2041 CsbD-like protein YP_001768775.1 KEGG: mex:Mext_4377 hypothetical protein YP_001768776.1 PFAM: transposase mutator type; KEGG: rpc:RPC_3939 transposase, mutator type YP_001768781.1 KEGG: mex:Mext_2455 hypothetical protein YP_001768782.1 KEGG: rle:pRL70138 putative insertion sequence transposase-like protein YP_001768784.1 KEGG: mex:Mext_3816 hypothetical protein YP_001768785.1 KEGG: mex:Mext_3817 hypothetical protein YP_001768789.1 KEGG: mex:Mext_4377 hypothetical protein YP_001768791.1 PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_2213 putative transport protein (MFS superfamily) YP_001768793.1 KEGG: rle:pRL70138 putative insertion sequence transposase-like protein YP_001768794.1 KEGG: bbt:BBta_p0039 putative ABC-type uncharacterized transport system, periplasmic component YP_001768795.1 KEGG: bra:BRADO5230 hypothetical protein YP_001768797.1 KEGG: rle:pRL70026 putative transposase YP_001768800.1 PFAM: ROSMUCR transcriptional regulator; KEGG: mex:Mext_2438 ROSMUCR transcriptional regulator YP_001768801.1 PFAM: ROSMUCR transcriptional regulator; KEGG: azc:AZC_1086 putative transcriptional regulator YP_001768802.1 KEGG: rsq:Rsph17025_0130 phage DNA packaging protein Nu1 subunit of terminase-like protein YP_001768805.1 KEGG: mex:Mext_3988 hypothetical protein YP_001768806.1 KEGG: ade:Adeh_1681 PE-PGRS family protein YP_001768807.1 KEGG: mex:Mext_4166 hypothetical protein YP_001768808.1 KEGG: bja:bll4432 hypothetical protein YP_001768810.1 KEGG: mex:Mext_0887 hypothetical protein YP_001768811.1 KEGG: bja:bsl0169 hypothetical protein YP_001768812.1 PFAM: alpha/beta hydrolase fold; KEGG: mex:Mext_0102 alpha/beta hydrolase fold YP_001768814.1 PFAM: transposase mutator type; KEGG: rpc:RPC_3939 transposase, mutator type YP_001768815.1 PFAM: Sporulation domain protein; Lytic transglycosylase catalytic; KEGG: mex:Mext_0083 lytic transglycosylase catalytic YP_001768817.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: bbt:BBta_0881 putative metal ion transporter YP_001768818.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: swi:Swit_3963 phytanoyl-CoA dioxygenase YP_001768820.1 PFAM: glucose sorbosone dehydrogenase; KEGG: mex:Mext_1315 glucose sorbosone dehydrogenase YP_001768821.1 KEGG: mxa:MXAN_1764 transposase orfB, IS3 family YP_001768822.1 PFAM: transposase IS3/IS911 family protein; KEGG: azc:AZC_3852 transposase YP_001768823.1 PFAM: Auxin Efflux Carrier; KEGG: bra:BRADO1716 putative transporter (permease); putative malonate transporter YP_001768824.1 PFAM: thiamine pyrophosphate protein TPP binding domain protein; KEGG: bbt:BBta_2028 putative acetolactate synthase (acetohydroxy-acid synthase) (ALS), TPP-requiring enzyme YP_001768825.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: acr:Acry_0452 major facilitator superfamily MFS_1 YP_001768826.1 PFAM: pyruvate carboxyltransferase; KEGG: swi:Swit_2317 pyruvate carboxyltransferase YP_001768827.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: swi:Swit_2318 L-carnitine dehydratase/bile acid-inducible protein F YP_001768829.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: azc:AZC_2108 transcriptional regulator YP_001768830.1 PFAM: Extracellular ligand-binding receptor; KEGG: bbt:BBta_5995 putative leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor YP_001768831.1 PFAM: inner-membrane translocator; KEGG: bbt:BBta_5994 putative branched-chain amino acid ABC transporter (permease protein) YP_001768832.1 PFAM: inner-membrane translocator; KEGG: azc:AZC_2111 amino acid ABC transporter permease protein YP_001768833.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azc:AZC_2112 ABC transporter ATP-binding protein YP_001768834.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azc:AZC_2113 ABC transporter ATP-binding protein YP_001768835.1 PFAM: MmgE/PrpD family protein; KEGG: azc:AZC_2114 MmgE/PrpD family protein YP_001768836.1 KEGG: azc:AZC_2115 isocitrate lyase family protein YP_001768837.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: azc:AZC_2116 hydantoin utilization protein B YP_001768838.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: azc:AZC_2117 hydantoin utilization protein A YP_001768839.1 PFAM: isochorismatase hydrolase; KEGG: bbt:BBta_5987 putative isochorismatase family protein YP_001768840.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: azc:AZC_2105 fumarate reductase YP_001768841.1 KEGG: bra:BRADO5516 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein YP_001768842.1 KEGG: mgm:Mmc1_1780 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein YP_001768844.1 PFAM: Tetratricopeptide TPR_4; KEGG: pol:Bpro_2073 TPR repeat YP_001768845.1 KEGG: bja:bsl6675 hypothetical protein YP_001768847.1 PFAM: multicopper oxidase type 2; KEGG: afw:Anae109_3891 bilirubin oxidase YP_001768851.1 PFAM: peptidase M10A and M12B matrixin and adamalysin; FG-GAP repeat protein; SMART: peptidase metallopeptidase; KEGG: swi:Swit_0627 peptidase M10, serralysin-like protein YP_001768854.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: rxy:Rxyl_2386 poly(R)-hydroxyalkanoic acid synthase, class I YP_001768855.1 KEGG: mex:Mext_0067 hypothetical protein YP_001768857.1 PFAM: Pyridoxal-dependent decarboxylase; KEGG: mlo:mll0712 aromatic amino acid decarboxylase YP_001768858.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reu:Reut_B4131 regulatory protein, LysR:LysR, substrate-binding YP_001768859.1 PFAM: Antibiotic biosynthesis monooxygenase; Stress responsive alpha-beta barrel domain protein; KEGG: reh:H16_B0969 hypothetical protein YP_001768860.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: azc:AZC_1411 maleylacetate reductase YP_001768861.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B2575 major facilitator superfamily (MFS_1) transporter YP_001768862.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bja:bll2680 probable dehydrogenase YP_001768863.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity YP_001768864.1 PFAM: Pirin domain protein; KEGG: mex:Mext_0185 pirin domain protein YP_001768865.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: rpa:RPA3705 glycerol kinase YP_001768866.1 KEGG: swi:Swit_1319 PilT protein domain protein YP_001768868.1 KEGG: rpe:RPE_1384 extracellular solute-binding protein, family 1 YP_001768869.1 KEGG: rsq:Rsph17025_1202 small integral membrane protein-like protein YP_001768870.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpd:RPD_4065 binding-protein-dependent transport systems inner membrane component YP_001768871.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr2439 ABC transporter permease protein YP_001768872.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rpa:RPA4408 ATP-binding protein of sugar ABC transporter YP_001768873.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mes:Meso_1592 ABC transporter related YP_001768874.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane YP_001768875.1 PFAM: Extracellular ligand-binding receptor; KEGG: mag:amb1478 ABC-type branched-chain amino acid transport systems YP_001768876.1 PFAM: inner-membrane translocator; KEGG: mag:amb1477 branched-chain amino acid ABC-type transport system YP_001768877.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azc:AZC_2792 ABC transporter related protein YP_001768878.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_B0660 ABC branched chain amino acid family transporter, ATPase subunit YP_001768879.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: mlo:mlr4786 N-methylhydantoinase A (mikimopine-lactam hydrogenase) YP_001768880.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: mlo:mlr4788 N-methylhydantoinase B YP_001768881.1 PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: sil:SPO0831 xanthine dehydrogenase family protein, medium subunit YP_001768882.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: mag:amb1483 aldehyde oxidoreductase YP_001768883.1 KEGG: rpb:RPB_1667 hypothetical protein YP_001768884.1 PFAM: regulatory protein MarR; KEGG: sil:SPO0821 transcriptional regulator, MarR family YP_001768885.1 PFAM: protein of unknown function DUF375; KEGG: mag:amb1481 hypothetical protein YP_001768886.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: mgm:Mmc1_2003 Sel1 domain protein repeat-containing protein YP_001768887.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: bra:BRADO4942 hypothetical protein; putative CbxX/CfqX family protein (N-term) and peptidase (C-term) YP_001768889.1 PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_2491 major facilitator superfamily MFS_1 YP_001768890.1 PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: mex:Mext_3966 arsenical pump membrane protein YP_001768892.1 KEGG: mlo:mll7787 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein YP_001768893.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: ajs:Ajs_3408 TRAP dicarboxylate transporter-DctP subunit YP_001768894.1 KEGG: rpb:RPB_4539 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS) YP_001768895.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mex:Mext_2117 histidine kinase YP_001768897.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mex:Mext_2116 response regulator receiver YP_001768898.1 KEGG: mex:Mext_2709 hypothetical protein YP_001768899.1 KEGG: bra:BRADO1788 hypothetical protein YP_001768900.1 KEGG: mex:Mext_1547 uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_001768901.1 TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: xau:Xaut_1621 quinone oxidoreductase putative PIG3 YP_001768902.1 KEGG: mex:Mext_1545 hypothetical protein YP_001768903.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: mex:Mext_1544 3-hydroxybutyryl-CoA dehydrogenase YP_001768904.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: mex:Mext_1543 electron transfer flavoprotein alpha subunit YP_001768905.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: mex:Mext_1542 electron transfer flavoprotein alpha/beta-subunit YP_001768906.1 TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: mex:Mext_1541 ATP--cobalamin adenosyltransferase YP_001768907.1 KEGG: mex:Mext_1540 hypothetical protein YP_001768908.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: rpc:RPC_1278 Mg2+ transporter protein, CorA-like YP_001768909.1 KEGG: bja:bll3022 low-affinity inorganic phosphate transporter YP_001768910.1 KEGG: bja:bsr4462 hypothetical protein YP_001768911.1 PFAM: amino acid permease-associated region; KEGG: mex:Mext_4455 amino acid permease-associated region YP_001768913.1 KEGG: mex:Mext_1969 hypothetical protein YP_001768914.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: xau:Xaut_0346 2OG-Fe(II) oxygenase YP_001768915.1 KEGG: mex:Mext_0444 hypothetical protein YP_001768917.1 KEGG: xcb:XC_0515 hypothetical protein YP_001768919.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: xau:Xaut_2109 general secretion pathway protein G YP_001768920.1 PFAM: type II secretion system protein; KEGG: xau:Xaut_2108 type II secretion system protein YP_001768921.1 PFAM: peptidase A24A prepilin type IV; KEGG: nha:Nham_0731 peptidase A24A, prepilin type IV YP_001768922.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: rpc:RPC_3010 type II and III secretion system protein YP_001768923.1 KEGG: bja:bll6012 hypothetical protein YP_001768924.1 KEGG: bra:BRADO6340 putative general secretion pathway protein M, GspM YP_001768925.1 PFAM: Fimbrial assembly family protein; KEGG: xau:Xaut_2114 fimbrial assembly family protein YP_001768926.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: xau:Xaut_2107 type II secretion system protein E YP_001768927.1 KEGG: bra:BRADO1299 putative general secretion pathway protein K YP_001768928.1 KEGG: xau:Xaut_2112 putative general secretion pathway protein J YP_001768929.1 KEGG: bja:bll6018 probable general secretion pathway protein H precursor YP_001768930.1 KEGG: neu:NE2508 hypothetical protein YP_001768931.1 PFAM: Methyltransferase type 11; KEGG: rru:Rru_A2351 macrocin-O-methyltransferase YP_001768932.1 KEGG: xau:Xaut_1423 hypothetical protein YP_001768933.1 PFAM: FAD linked oxidase domain protein; KEGG: azc:AZC_4481 putative D-lactate dehydrogenase YP_001768934.1 KEGG: mex:Mext_2302 TRAP-type uncharacterized transport system periplasmic component-like protein YP_001768935.1 PFAM: regulatory protein RecX; KEGG: mex:Mext_2303 hypothetical protein YP_001768936.1 KEGG: mex:Mext_4377 hypothetical protein YP_001768940.1 PFAM: dienelactone hydrolase; KEGG: mex:Mext_1804 carboxymethylenebutenolidase YP_001768941.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: bja:blr5158 potassium-tellurite ethidium and proflavin transporter YP_001768942.1 KEGG: mex:Mext_0802 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001768943.1 PFAM: CheC domain protein; KEGG: rpc:RPC_4604 CheC, inhibitor of MCP methylation YP_001768944.1 PFAM: response regulator receiver; KEGG: rpe:RPE_3629 response regulator receiver protein YP_001768945.1 KEGG: rpe:RPE_3630 hypothetical protein YP_001768946.1 PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: rpc:RPC_4607 CheA signal transduction histidine kinases YP_001768947.1 PFAM: response regulator receiver; KEGG: rpe:RPE_3632 response regulator receiver protein YP_001768948.1 PFAM: MCP methyltransferase CheR-type; KEGG: rpc:RPC_4609 MCP methyltransferase, CheR-type YP_001768949.1 KEGG: rpe:RPE_3634 PBS lyase heat domain protein repeat-containing protein YP_001768950.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: rpe:RPE_3635 response regulator receiver modulated CheB methylesterase YP_001768951.1 PFAM: CheW domain protein; KEGG: rpc:RPC_4612 CheW protein YP_001768952.1 PFAM: chemotaxis sensory transducer; KEGG: rpe:RPE_3637 methyl-accepting chemotaxis sensory transducer YP_001768953.1 TIGRFAM: methyltransferase FkbM family; KEGG: saq:Sare_2645 methyltransferase FkbM family YP_001768954.1 KEGG: bja:blr7985 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; MHYT domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001768955.1 PFAM: Carbamoyltransferase; KEGG: mex:Mext_3294 carbamoyltransferase YP_001768956.1 KEGG: mex:Mext_0320 hypothetical protein YP_001768957.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: nha:Nham_3690 protein of unknown function DUF6, transmembrane YP_001768959.1 PFAM: protein of unknown function DUF985; KEGG: mex:Mext_4537 protein of unknown function DUF985 YP_001768960.1 KEGG: mex:Mext_2510 hydroxyacylglutathione hydrolase; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein YP_001768961.1 PFAM: Methyltransferase type 11; KEGG: mex:Mext_2509 methyltransferase type 11 YP_001768962.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: mex:Mext_2508 multiple antibiotic resistance (MarC)-related protein YP_001768963.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_001768964.1 catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_001768965.1 KEGG: mex:Mext_0500 hypothetical protein YP_001768966.1 PFAM: LmbE family protein; KEGG: mes:Meso_2689 LmbE-like protein YP_001768967.1 PFAM: metallothionein family 14; KEGG: mex:Mext_2843 metallothionein family 14 YP_001768968.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mex:Mext_0504 NAD-dependent epimerase/dehydratase YP_001768969.1 KEGG: mex:Mext_0505 hypothetical protein YP_001768970.1 KEGG: mex:Mext_0506 hypothetical protein YP_001768971.1 KEGG: mex:Mext_0247 hypothetical protein YP_001768972.1 PFAM: glycosyl transferase group 1; KEGG: mex:Mext_0508 glycosyl transferase group 1 YP_001768973.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mex:Mext_0249 radical SAM domain protein YP_001768974.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mex:Mext_0250 NAD-dependent epimerase/dehydratase YP_001768975.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KR domain protein; KEGG: mex:Mext_0251 NAD-dependent epimerase/dehydratase YP_001768976.1 KEGG: mex:Mext_1049 hypothetical protein YP_001768977.1 KEGG: mex:Mext_1193 hypothetical protein YP_001768978.1 KEGG: mex:Mext_4051 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001768979.1 TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: xau:Xaut_1781 pyrrolo-quinoline quinone YP_001768980.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: nha:Nham_4176 short-chain dehydrogenase/reductase SDR YP_001768981.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: bur:Bcep18194_C6939 senescence marker protein-30 (SMP-30) YP_001768982.1 PFAM: glucose-methanol-choline oxidoreductase; KEGG: bra:BRADO6328 putative oxidoreductase; putative FAD/NAD(P)-binding domain YP_001768983.1 KEGG: noc:Noc_0466 hypothetical protein YP_001768984.1 KEGG: nha:Nham_4192 hypothetical protein YP_001768985.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bra:BRADO6325 putative mandelate racemase/muconate lactonizing enzyme family protein YP_001768986.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bxe:Bxe_C1284 pyruvate decarboxylase YP_001768987.1 PFAM: lipolytic protein G-D-S-L family; KEGG: mex:Mext_3316 lipolytic protein G-D-S-L family YP_001768988.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; CHASE3 domain protein; KEGG: mex:Mext_1266 chemotaxis sensory transducer YP_001768989.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: swi:Swit_1485 hypothetical protein YP_001768990.1 PFAM: peptidase S58 DmpA; KEGG: mex:Mext_4248 peptidase S58 DmpA YP_001768991.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bbt:BBta_3537 putative component of multidrug efflux pump, MdtA-like protein YP_001768992.1 PFAM: acriflavin resistance protein; KEGG: nha:Nham_1509 acriflavin resistance protein YP_001768993.1 PFAM: conserved hypothetical protein; KEGG: mex:Mext_4300 hypothetical protein YP_001768994.1 PFAM: NUDIX hydrolase; KEGG: mex:Mext_4299 NUDIX hydrolase YP_001768995.1 KEGG: mex:Mext_4298 hypothetical protein YP_001768996.1 KEGG: xau:Xaut_2478 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding YP_001768997.1 KEGG: mex:Mext_4294 hypothetical protein YP_001768998.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: mex:Mext_4293 heat shock protein DnaJ domain protein YP_001768999.1 PFAM: FAD dependent oxidoreductase; KEGG: pla:Plav_0853 flavin-binding family monooxygenase YP_001769000.1 PFAM: protein of unknown function DUF1185; KEGG: xau:Xaut_4213 protein of unknown function DUF1185 YP_001769001.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: mex:Mext_2277 pseudouridine synthase YP_001769002.1 PFAM: methyltransferase small; Methyltransferase type 12; KEGG: mex:Mext_2276 methyltransferase small YP_001769003.1 PFAM: response regulator receiver; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; KEGG: mex:Mext_1782 PAS sensor protein YP_001769004.1 KEGG: mex:Mext_1748 diguanylate cyclase YP_001769005.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: azc:AZC_2402 acyl CoA dehydrogenase YP_001769006.1 KEGG: azc:AZC_2329 hypothetical protein YP_001769007.1 PFAM: regulatory protein TetR; KEGG: acr:Acry_3038 transcriptional regulator, TetR family YP_001769008.1 KEGG: mex:Mext_2250 hypothetical protein YP_001769009.1 PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: mex:Mext_0299 protein of unknown function DUF900 hydrolase family protein YP_001769010.1 functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins YP_001769011.1 PFAM: Phosphoglycerate mutase; KEGG: sme:SMb20250 hypothetical protein YP_001769012.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mex:Mext_0501 methyltransferase type 12 YP_001769013.1 TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: mex:Mext_3013 urease accessory protein UreG YP_001769014.1 KEGG: mex:Mext_2706 hypothetical protein YP_001769015.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: mex:Mext_2707 cobalamin synthesis protein P47K YP_001769016.1 PFAM: Urease accessory protein UreF; KEGG: mex:Mext_3014 urease accessory protein UreF YP_001769017.1 PFAM: UreE urease accessory domain protein; KEGG: mex:Mext_3015 UreE urease accessory domain protein YP_001769018.1 PFAM: FAD dependent oxidoreductase; KEGG: xau:Xaut_2304 D-amino-acid dehydrogenase YP_001769019.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: oan:Oant_1446 putative transcriptional regulator, AsnC family YP_001769020.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xau:Xaut_1507 transcriptional regulator, LysR family YP_001769021.1 PFAM: protein of unknown function DUF1445; KEGG: xau:Xaut_1503 protein of unknown function DUF1445 YP_001769022.1 PFAM: Extracellular ligand-binding receptor; KEGG: xau:Xaut_1502 extracellular ligand-binding receptor YP_001769023.1 PFAM: inner-membrane translocator; KEGG: xau:Xaut_1501 inner-membrane translocator YP_001769024.1 PFAM: inner-membrane translocator; KEGG: xau:Xaut_1500 inner-membrane translocator YP_001769025.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xau:Xaut_1499 ABC transporter related YP_001769026.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xau:Xaut_1498 ABC transporter related YP_001769027.1 PFAM: LamB/YcsF family protein; KEGG: azc:AZC_4074 lactam utilization protein YP_001769028.1 PFAM: Allophanate hydrolase subunit 1; KEGG: xau:Xaut_1496 allophanate hydrolase subunit 1 YP_001769029.1 TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: azc:AZC_4072 allophanate hydrolase subunit 2 YP_001769030.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_3420 major facilitator superfamily MFS_1 YP_001769032.1 PFAM: DoxX family protein; KEGG: mex:Mext_3428 DoxX family protein YP_001769033.1 KEGG: mex:Mext_2231 hypothetical protein YP_001769034.1 KEGG: mex:Mext_0136 diguanylate cyclase; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein YP_001769035.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: mes:Meso_0596 two component transcriptional regulator, LuxR family YP_001769036.1 KEGG: mex:Mext_1694 hypothetical protein YP_001769037.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_001769038.1 KEGG: mex:Mext_1692 hypothetical protein YP_001769039.1 KEGG: mex:Mext_1696 conserved hypothetical protein; putative signal peptide YP_001769040.1 catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway. YP_001769041.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_1698 ABC transporter related YP_001769042.1 PFAM: inner-membrane translocator; KEGG: mex:Mext_1699 inner-membrane translocator YP_001769043.1 PFAM: inner-membrane translocator; KEGG: mex:Mext_1700 inner-membrane translocator YP_001769044.1 PFAM: basic membrane lipoprotein; KEGG: mex:Mext_1708 basic membrane lipoprotein YP_001769046.1 PFAM: NUDIX hydrolase; KEGG: mex:Mext_2173 NUDIX hydrolase YP_001769047.1 PFAM: regulatory protein MarR; KEGG: mex:Mext_2174 regulatory protein MarR YP_001769048.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; L-seryl-tRNA selenium transferase; KEGG: bpd:BURPS668_A2392 L-seryl-tRNA selenium transferase YP_001769049.1 KEGG: mex:Mext_0859 hypothetical protein YP_001769050.1 PFAM: NLP/P60 protein; KEGG: mex:Mext_0858 NLP/P60 protein YP_001769051.1 PFAM: AzlC family protein; KEGG: xau:Xaut_1763 AzlC family protein YP_001769052.1 PFAM: branched-chain amino acid transport; KEGG: rpe:RPE_4696 branched-chain amino acid transport YP_001769053.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mex:Mext_0860 short-chain dehydrogenase/reductase SDR YP_001769054.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mex:Mext_0930 GCN5-related N-acetyltransferase YP_001769055.1 PFAM: AFG1-family ATPase; KEGG: mex:Mext_0934 AFG1-family ATPase YP_001769056.1 PFAM: regulatory protein TetR; KEGG: mex:Mext_1642 regulatory protein TetR YP_001769057.1 TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase; KEGG: mex:Mext_1643 malate dehydrogenase, NAD-dependent YP_001769058.1 KEGG: mex:Mext_1644 succinyl-CoA synthetase, beta subunit; TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein YP_001769059.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: mex:Mext_1645 succinyl-CoA synthetase, alpha subunit YP_001769060.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_001769061.1 PFAM: YCII-related; KEGG: rle:RL4434 hypothetical protein YP_001769062.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: mex:Mext_1647 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase YP_001769063.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpa:RPA0186 putative short-chain dehydrogenase/reductase YP_001769064.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide YP_001769065.1 PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: mex:Mext_1641 shikimate kinase, 3-dehydroquinate synthase YP_001769066.1 PFAM: shikimate kinase; KEGG: mex:Mext_1641 shikimate kinase, 3-dehydroquinate synthase YP_001769067.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: mex:Mext_2512 tyrosine recombinase XerD YP_001769068.1 PFAM: protein of unknown function DUF55; KEGG: mex:Mext_0729 protein of unknown function DUF55 YP_001769069.1 KEGG: mex:Mext_3950 hypothetical protein YP_001769070.1 PFAM: PRC-barrel domain protein; KEGG: mex:Mext_3285 PRC-barrel domain protein YP_001769071.1 D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm YP_001769072.1 TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: mex:Mext_3281 peptide methionine sulfoxide reductase YP_001769073.1 KEGG: mex:Mext_3286 hypothetical protein YP_001769074.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mex:Mext_3293 HAD-superfamily hydrolase, subfamily IA, variant 3 YP_001769075.1 PFAM: NADPH-dependent FMN reductase; KEGG: mex:Mext_3404 NADPH-dependent FMN reductase YP_001769076.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: nha:Nham_0349 periplasmic sensor hybrid histidine kinase YP_001769077.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: mex:Mext_2501 RNA polymerase sigma-54 factor, RpoN YP_001769078.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_2500 ABC transporter related YP_001769079.1 PFAM: GrpE protein; KEGG: mex:Mext_0336 ribulose-phosphate 3-epimerase YP_001769080.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein YP_001769081.1 TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: NMT1/THI5 like domain protein; KEGG: mex:Mext_0334 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein YP_001769082.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_0332 binding-protein-dependent transport systems inner membrane component YP_001769083.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_0331 ABC transporter related YP_001769084.1 PFAM: OsmC family protein; KEGG: mex:Mext_0330 OsmC family protein YP_001769085.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: mex:Mext_2502 ribosomal subunit interface protein YP_001769086.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: mex:Mext_2503 PTS IIA-like nitrogen-regulatory protein PtsN YP_001769087.1 KEGG: mex:Mext_2504 hypothetical protein YP_001769088.1 PFAM: protein of unknown function DUF218; KEGG: mex:Mext_2865 protein of unknown function DUF218 YP_001769089.1 PFAM: protein of unknown function DUF214; KEGG: mex:Mext_2864 protein of unknown function DUF214 YP_001769090.1 KEGG: mex:Mext_2863 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase YP_001769091.1 TIGRFAM: MJ0042 family finger-like protein; KEGG: mex:Mext_2862 MJ0042 family finger-like protein YP_001769092.1 KEGG: mex:Mext_2861 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_001769093.1 PFAM: response regulator receiver; KEGG: mex:Mext_2860 response regulator receiver YP_001769094.1 PFAM: AMP-dependent synthetase and ligase; KEGG: mex:Mext_4434 AMP-dependent synthetase and ligase YP_001769095.1 PFAM: nitroreductase; KEGG: mex:Mext_4435 nitroreductase YP_001769096.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: bja:bll7260 leucine-responsive transcriptional regulatory protein YP_001769097.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain YP_001769098.1 KEGG: rfr:Rfer_1093 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001769099.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rpc:RPC_4889 PAS/PAC sensor hybrid histidine kinase YP_001769100.1 PFAM: response regulator receiver; KEGG: atc:AGR_C_3618 hypothetical protein YP_001769101.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Phytochrome central region domain protein; PAS fold-2 domain protein; KEGG: psa:PST_4182 phytochrome family protein, putative YP_001769102.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: sil:SPO1213 oligopeptide ABC transporter, ATP-binding protein YP_001769103.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpt:Bpet4042 probable ABC transporter, permease protein YP_001769104.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_1224 binding-protein-dependent transport systems inner membrane component YP_001769105.1 PFAM: extracellular solute-binding protein family 5; KEGG: rpa:RPA1218 putative ABC transporter periplasmic protein YP_001769106.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_001769107.1 KEGG: bra:BRADO3560 putative RNA ligase YP_001769108.1 KEGG: mex:Mext_3019 urease, gamma subunit; TIGRFAM: urease, beta subunit; urease, gamma subunit; PFAM: Urease beta subunit; Urease gamma subunit region YP_001769109.1 PFAM: Urease accessory protein UreD; KEGG: mex:Mext_3020 urease accessory protein UreD YP_001769110.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: mex:Mext_4554 cupin 2 conserved barrel domain protein YP_001769111.1 PFAM: peptidase M16 domain protein; KEGG: mex:Mext_2329 peptidase M16 domain protein YP_001769112.1 PFAM: peptidase M16 domain protein; KEGG: mex:Mext_2328 peptidase M16 domain protein YP_001769113.1 KEGG: mex:Mext_2327 hypothetical protein YP_001769114.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_001769115.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family; some organisms carry two different copies of this enzyme YP_001769117.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: mex:Mext_0420 riboflavin biosynthesis protein RibF YP_001769118.1 PFAM: response regulator receiver; KEGG: mex:Mext_0419 response regulator receiver YP_001769119.1 KEGG: mex:Mext_0418 chemotaxis protein YP_001769120.1 TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mex:Mext_1499 HAD-superfamily hydrolase, subfamily IIA YP_001769121.1 KEGG: gdi:GDI2526 adenine deaminase; TIGRFAM: adenine deaminase; PFAM: amidohydrolase; Amidohydrolase 3 YP_001769122.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mex:Mext_0426 short-chain dehydrogenase/reductase SDR YP_001769123.1 FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_001769124.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP YP_001769125.1 PFAM: ferric-uptake regulator; KEGG: mex:Mext_0423 ferric-uptake regulator YP_001769126.1 PFAM: protein of unknown function DUF1058; KEGG: mex:Mext_0422 protein of unknown function DUF1058 YP_001769127.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: mex:Mext_0421 glyoxylate reductase YP_001769128.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mex:Mext_0575 amine oxidase YP_001769129.1 KEGG: acr:Acry_0558 hypothetical protein YP_001769130.1 KEGG: swi:Swit_2879 hypothetical protein YP_001769131.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: ccr:CC_1101 hypothetical protein YP_001769132.1 KEGG: mex:Mext_4155 hypothetical protein YP_001769133.1 KEGG: bja:bll0406 hypothetical protein YP_001769134.1 KEGG: bja:bll0405 hypothetical protein YP_001769135.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: mex:Mext_1007 NADH dehydrogenase YP_001769136.1 PFAM: protein of unknown function DUF540; KEGG: mex:Mext_0573 protein of unknown function DUF540 YP_001769137.1 KEGG: mex:Mext_0905 hypothetical protein YP_001769138.1 PFAM: glutamate--cysteine ligase GCS2; KEGG: mex:Mext_4653 glutamate--cysteine ligase GCS2 YP_001769139.1 PFAM: protein of unknown function DUF558; KEGG: mex:Mext_0899 protein of unknown function DUF558 YP_001769140.1 TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: mex:Mext_0897 4-hydroxybenzoate polyprenyl transferase YP_001769141.1 KEGG: mex:Mext_0896 hypothetical protein YP_001769142.1 PFAM: inositol monophosphatase; KEGG: mex:Mext_0895 inositol monophosphatase YP_001769143.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_001769144.1 KEGG: ret:RHE_CH01073 hypothetical protein YP_001769145.1 KEGG: mex:Mext_3217 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase YP_001769146.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mex:Mext_4068 chemotaxis sensory transducer YP_001769147.1 PFAM: protein of unknown function DUF323; KEGG: mex:Mext_3218 protein of unknown function DUF323 YP_001769148.1 KEGG: mex:Mext_3219 hypothetical protein YP_001769149.1 KEGG: nha:Nham_2422 hypothetical protein YP_001769150.1 PFAM: heat shock protein DnaJ domain protein; KEGG: rpd:RPD_3059 heat shock protein DnaJ-like YP_001769151.1 PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Sporulation domain protein; KEGG: mex:Mext_4800 serine-type D-Ala-D-Ala carboxypeptidase YP_001769152.1 KEGG: mlo:mll0665 hypothetical protein YP_001769153.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: mex:Mext_4801 ATP-dependent Clp protease adaptor protein ClpS YP_001769154.1 KEGG: mex:Mext_4802 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase YP_001769155.1 KEGG: mex:Mext_4803 hypothetical protein YP_001769156.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: mex:Mext_2974 cold-shock protein DNA-binding YP_001769157.1 PFAM: nitroreductase; KEGG: mes:Meso_1481 nitroreductase YP_001769158.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: mex:Mext_1265 GTP-binding protein TypA YP_001769159.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: rpc:RPC_2525 TRAP transporter solute receptor, TAXI family YP_001769161.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: chy:CHY_2228 high affinity branched-chain amino acid ABC transporter, ATP-binding protein YP_001769162.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_2978 ABC transporter related YP_001769163.1 PFAM: inner-membrane translocator; KEGG: rso:RS01987 probable amino-acid transmembrane ABC transporter protein YP_001769164.1 PFAM: inner-membrane translocator; KEGG: rso:RS01986 probable amino-acid transmembrane lipoprotein ABC transporter YP_001769165.1 PFAM: Extracellular ligand-binding receptor; KEGG: rso:RS01985 probable amino acid-binding periplasmic (PBP) ABC transporter protein YP_001769166.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: mex:Mext_0975 protein of unknown function DUF306 MetA and HslJ YP_001769167.1 KEGG: mex:Mext_0976 hypothetical protein YP_001769168.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mex:Mext_0977 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001769169.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll1253 ATP-binding protein of ABC transporter YP_001769170.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_6456 putative ABC transporter (permease protein) YP_001769171.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; NMT1/THI5 like domain protein; KEGG: bja:blr6246 ABC transporter substrate-binding protein YP_001769173.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; KEGG: rpe:RPE_3014 signal transduction histidine kinase YP_001769174.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mex:Mext_0990 HAD-superfamily hydrolase, subfamily IA, variant 3 YP_001769175.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: mex:Mext_0980 phosphoribulokinase YP_001769176.1 PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: mex:Mext_0979 inositol phosphatase/fructose-16-bisphosphatase YP_001769177.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mex:Mext_0978 LysR substrate-binding YP_001769178.1 PFAM: LmbE family protein; KEGG: mex:Mext_2686 LmbE family protein YP_001769179.1 PFAM: glycosyl transferase group 1; KEGG: mex:Mext_2685 glycosyl transferase group 1 YP_001769180.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: mex:Mext_2684 xylose isomerase domain protein TIM barrel YP_001769181.1 PFAM: protein of unknown function DUF181; KEGG: mex:Mext_2683 protein of unknown function DUF181 YP_001769182.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: mex:Mext_2682 oxidoreductase domain protein YP_001769183.1 PFAM: Methyltransferase type 11; KEGG: mex:Mext_2681 methyltransferase type 11 YP_001769184.1 KEGG: mex:Mext_2680 hypothetical protein YP_001769185.1 PFAM: Myo-inositol-1-phosphate synthase; Myo-inositol-1-phosphate synthase GAPDH domain protein; KEGG: mex:Mext_2679 inositol-3-phosphate synthase YP_001769186.1 PFAM: Lytic transglycosylase catalytic; KEGG: mex:Mext_2678 lytic transglycosylase catalytic YP_001769187.1 PFAM: ferredoxin; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: sil:SPO0901 adenylate/guanylate cyclase YP_001769188.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: gdi:GDI0019 putative cation transporter protein YP_001769189.1 KEGG: mex:Mext_1255 hypothetical protein YP_001769190.1 PFAM: ROK family protein; KEGG: mex:Mext_2323 ROK family protein YP_001769191.1 PFAM: sodium:dicarboxylate symporter; KEGG: mex:Mext_2324 sodium:dicarboxylate symporter YP_001769192.1 KEGG: mex:Mext_0872 hypothetical protein YP_001769193.1 PFAM: regulatory protein TetR; KEGG: bpe:BP2741 putative TetR-family transcriptional regulator YP_001769194.1 PFAM: major facilitator superfamily MFS_1; KEGG: bpt:Bpet2649 putative transmembrane transport protein YP_001769195.1 KEGG: rpd:RPD_3472 hypothetical protein YP_001769196.1 PFAM: Asparaginase/glutaminase; KEGG: kra:Krad_3608 asparaginase/glutaminase YP_001769198.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_1555 ABC transporter related YP_001769199.1 KEGG: rpc:RPC_4179 putative branched-chain amino acid ABC transport system substrate-binding protein YP_001769200.1 PFAM: inner-membrane translocator; KEGG: rpc:RPC_4178 inner-membrane translocator YP_001769201.1 PFAM: inner-membrane translocator; KEGG: xau:Xaut_1862 inner-membrane translocator YP_001769202.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bbt:BBta_5715 putative long-chain-fatty-acid-CoA ligase YP_001769203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr5962 ABC transporter ATP-binding protein YP_001769204.1 PFAM: regulatory protein TetR; KEGG: xau:Xaut_1858 transcriptional regulator, TetR family YP_001769205.1 KEGG: bbt:BBta_5720 putative phenylacetate-CoA ligase YP_001769206.1 KEGG: scl:sce5012 hypothetical protein YP_001769208.1 PFAM: HpcH/HpaI aldolase; KEGG: mlo:mlr0906 citrate lyase beta chain YP_001769209.1 PFAM: MaoC domain protein dehydratase; KEGG: pla:Plav_2683 MaoC domain protein dehydratase YP_001769210.1 PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pla:Plav_2788 carbamoyl-phosphate synthase L chain ATP-binding YP_001769211.1 PFAM: carboxyl transferase; KEGG: mmr:Mmar10_1734 propionyl-CoA carboxylase YP_001769212.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bbt:BBta_6658 isovaleryl-CoA dehydrogenase YP_001769213.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rpb:RPB_0580 AMP-dependent synthetase and ligase YP_001769214.1 PFAM: regulatory protein ArsR; KEGG: mlo:mlr0745 transcriptional regulator YP_001769215.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mlo:mlr0746 hypothetical protein YP_001769216.1 PFAM: peptidase S14 ClpP; KEGG: mex:Mext_2416 ATP-dependent Clp protease, proteolytic subunit ClpP YP_001769217.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: mex:Mext_1391 pyridoxal-5'-phosphate-dependent protein beta subunit YP_001769218.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates YP_001769220.1 PFAM: protein of unknown function DUF81; KEGG: ret:RHE_CH01566 hypothetical conserved membrane protein YP_001769221.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_001769222.1 PFAM: Glutathione S-transferase domain; KEGG: pla:Plav_2848 glutathione S-transferase domain YP_001769223.1 PFAM: protein of unknown function DUF1127; KEGG: psp:PSPPH_3637 domain of unknown function (DUF1127) family YP_001769224.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rru:Rru_A2214 transcriptional regulator, LysR family YP_001769225.1 PFAM: protein of unknown function DUF1007; KEGG: mex:Mext_1404 protein of unknown function DUF1007 YP_001769226.1 PFAM: high-affinity nickel-transporter; KEGG: mex:Mext_1403 high-affinity nickel-transporter YP_001769227.1 PFAM: beta-lactamase domain protein; KEGG: mex:Mext_4456 beta-lactamase domain protein YP_001769228.1 KEGG: mex:Mext_4458 ABC-type multidrug transport system ATPase and permease components-like protein YP_001769229.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: mex:Mext_2030 putative ferredoxin-NAD reductase component YP_001769230.1 KEGG: mex:Mext_2031 hypothetical protein YP_001769231.1 PFAM: response regulator receiver; KEGG: bcs:BCAN_A0105 response regulator receiver protein YP_001769232.1 KEGG: mex:Mext_2032 diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein YP_001769233.1 PFAM: peptidase M16 domain protein; KEGG: mex:Mext_3253 processing peptidase YP_001769234.1 KEGG: mex:Mext_3254 threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_001769235.1 PFAM: Surfeit locus 1 family protein; KEGG: mex:Mext_3256 surfeit locus 1 family protein YP_001769236.1 PFAM: protein of unknown function DUF983; KEGG: mex:Mext_3257 protein of unknown function DUF983 YP_001769237.1 PFAM: cytochrome c oxidase subunit III; KEGG: mex:Mext_3258 cytochrome c oxidase subunit III YP_001769238.1 PFAM: cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: mex:Mext_3259 cytochrome c oxidase assembly protein CtaG/Cox11 YP_001769239.1 KEGG: mex:Mext_3260 conserved protein CoxF YP_001769240.1 converts protoheme IX and farnesyl diphosphate to heme O YP_001769241.1 KEGG: mex:Mext_3262 cytochrome c oxidase, subunit I; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I YP_001769242.1 KEGG: mex:Mext_3263 cytochrome c oxidase, subunit II; TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome C oxidase subunit II transmembrane region YP_001769243.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: azc:AZC_1079 transcriptional regulator YP_001769244.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: cvi:CV_1639 hypothetical protein YP_001769245.1 PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: mex:Mext_4404 NADH dehydrogenase (ubiquinone) 24 kDa subunit YP_001769246.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: mex:Mext_4405 NADH dehydrogenase (quinone) YP_001769247.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: mex:Mext_3264 formate dehydrogenase family accessory protein FdhD YP_001769248.1 KEGG: mex:Mext_4407 hypothetical protein YP_001769249.1 TIGRFAM: CRISPR-associated protein Cas2; KEGG: gdi:GDI0058 hypothetical protein YP_001769250.1 PFAM: cytochrome B561; KEGG: eba:ebA5023 probable cytochrome b561 YP_001769251.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: azc:AZC_4171 putative pyrimidine reductase YP_001769252.1 catalyzes the formation of formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine from GTP YP_001769253.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mex:Mext_4752 methyltransferase type 11 YP_001769254.1 SMART: helix-turn-helix domain protein; KEGG: bch:Bcen2424_2428 transcriptional regulator, XRE family YP_001769255.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: azc:AZC_2466 methyl-accepting chemotaxis sensory transducer YP_001769256.1 KEGG: mex:Mext_3878 hypothetical protein YP_001769257.1 TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpa:RPA1056 putative dehydrogenase (zinc-binding alcohol dehydrogenase, NADPH quinone oxidoreductase, oxidoreductase) YP_001769258.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: mex:Mext_3876 transcription elongation factor GreA/GreB domain protein YP_001769259.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mex:Mext_4279 LysR substrate-binding YP_001769260.1 stationary phase protein that binds TrpR repressor YP_001769261.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: mex:Mext_4105 SUA5/YciO/YrdC/YwlC family protein YP_001769262.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: mex:Mext_4104 acyl-CoA dehydrogenase domain protein YP_001769263.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mex:Mext_3610 enoyl-CoA hydratase/isomerase YP_001769264.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mex:Mext_3611 short-chain dehydrogenase/reductase SDR YP_001769265.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mex:Mext_3612 short-chain dehydrogenase/reductase SDR YP_001769266.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: mex:Mext_3613 magnesium and cobalt transport protein CorA YP_001769267.1 PFAM: protein of unknown function DUF159; KEGG: mex:Mext_4315 protein of unknown function DUF159 YP_001769268.1 PFAM: (Uracil-5)-methyltransferase; KEGG: mex:Mext_4312 (uracil-5)-methyltransferase YP_001769269.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: mex:Mext_4311 hemolysin A YP_001769270.1 PFAM: superoxide dismutase copper/zinc binding; KEGG: mex:Mext_4310 superoxide dismutase copper/zinc binding YP_001769271.1 PFAM: type II secretion system protein; KEGG: mex:Mext_2485 type II secretion system protein YP_001769272.1 PFAM: type II secretion system protein; KEGG: mex:Mext_2484 type II secretion system protein YP_001769273.1 PFAM: type II secretion system protein E; KEGG: mex:Mext_2483 type II secretion system protein E YP_001769274.1 KEGG: mex:Mext_2482 putative pilus assembly protein CpaE YP_001769275.1 TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; PFAM: Pilus biogenesis CpaD family protein; KEGG: mex:Mext_2481 pilus (Caulobacter type) biogenesis lipoprotein CpaD YP_001769276.1 PFAM: type II and III secretion system protein; transport-associated; KEGG: mex:Mext_2480 type II and III secretion system protein YP_001769277.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: mex:Mext_2479 Flp pilus assembly protein CpaB YP_001769278.1 PFAM: peptidase A24A prepilin type IV; KEGG: mex:Mext_2478 peptidase A24A prepilin type IV YP_001769279.1 PFAM: Flp/Fap pilin component; KEGG: nwi:Nwi_0304 Flp/Fap pilin component YP_001769280.1 KEGG: mex:Mext_2476 hypothetical protein YP_001769281.1 PFAM: TadE family protein; KEGG: rpb:RPB_1789 TadE-like YP_001769282.1 KEGG: mlo:mll5590 hypothetical protein YP_001769283.1 KEGG: bbt:BBta_7351 putative exported protein of unknown function with protease domajn YP_001769284.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_001769285.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_001769286.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_001769287.1 PFAM: Endonuclease V; KEGG: mex:Mext_2472 deoxyribonuclease V YP_001769288.1 PFAM: MaoC domain protein dehydratase; KEGG: mex:Mext_2486 MaoC domain protein dehydratase YP_001769289.1 PFAM: Lytic transglycosylase catalytic; KEGG: mex:Mext_3465 lytic transglycosylase catalytic YP_001769290.1 KEGG: bja:blr0925 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase; PFAM: Thiolase YP_001769291.1 consists of N-terminal helix-turn-helix domain and C-terminal shikimate kinase-like domain which may bind benzoyl-CoA; controls inducible expression of the bzd catabolic operon that is involved in the anaerobic catabolism of benzoate YP_001769292.1 PFAM: alpha/beta hydrolase fold; KEGG: bxe:Bxe_A1579 putative hydrolase YP_001769293.1 KEGG: mex:Mext_2111 serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine acetyltransferase domain protein YP_001769294.1 KEGG: rpd:RPD_3286 hypothetical protein YP_001769295.1 KEGG: mex:Mext_2109 hypothetical protein YP_001769296.1 PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: mex:Mext_2256 transglutaminase family protein cysteine peptidase BTLCP YP_001769297.1 PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: mex:Mext_2257 transglutaminase family protein cysteine peptidase BTLCP YP_001769298.1 PFAM: isochorismatase hydrolase; KEGG: mex:Mext_1015 isochorismatase hydrolase YP_001769299.1 KEGG: mex:Mext_4322 hypothetical protein YP_001769300.1 PFAM: type IV pilus assembly PilZ; KEGG: mex:Mext_4321 type IV pilus assembly PilZ YP_001769301.1 PFAM: beta-lactamase domain protein; KEGG: mex:Mext_0647 hypothetical protein YP_001769304.1 KEGG: rpd:RPD_2731 hypothetical protein YP_001769305.1 PFAM: Curlin associated repeat protein; KEGG: she:Shewmr4_0721 curlin associated repeat protein YP_001769306.1 KEGG: spl:Spea_3235 curlin associated repeat protein YP_001769307.1 KEGG: rpd:RPD_2726 hypothetical protein YP_001769308.1 SMART: regulatory protein LuxR; KEGG: mlo:mll6760 two component system response regulator YP_001769309.1 PFAM: Curli production assembly/transport component CsgG; KEGG: rpd:RPD_2732 putative curli production assembly/transport component CsgG precursor YP_001769311.1 PFAM: Gp37Gp68 family protein; KEGG: rsp:RSP_3795 hypothetical protein YP_001769313.1 PFAM: protein of unknown function DUF849; KEGG: fno:Fnod_0209 protein of unknown function DUF849 YP_001769314.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rpe:RPE_0278 transcriptional regulator, AraC family YP_001769315.1 PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; KEGG: sha:SH0313 hypothetical protein YP_001769316.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_001769317.1 TIGRFAM: cobyric acid synthase CobQ; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: mex:Mext_4723 cobyric acid synthase CobQ YP_001769318.1 KEGG: mex:Mext_2745 porin YP_001769319.1 KEGG: bbt:BBta_3139 Cob(I)yrinic acid a,c-diamide adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_001769320.1 PFAM: cobalbumin biosynthesis protein; KEGG: mex:Mext_1447 adenosylcobinamide-phosphate guanylyltransferase YP_001769321.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: swi:Swit_0554 transcriptional regulator, LysR family YP_001769322.1 PFAM: major facilitator superfamily MFS_1; KEGG: ppu:PP_2535 hypothetical protein YP_001769323.1 TIGRFAM: cobalt transporter, subunit CbtB; PFAM: Cobalt transporter subunit CbtB putative; KEGG: mex:Mext_1444 cobalt transporter, subunit CbtB YP_001769324.1 TIGRFAM: cobalt transporter, subunit CbtA; PFAM: Cobalt transporter subunit CbtA putative; KEGG: mex:Mext_1443 cobalt transporter, subunit CbtA YP_001769325.1 PFAM: protein of unknown function DUF1636; KEGG: rsh:Rsph17029_1466 protein of unknown function DUF1636 YP_001769326.1 TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: mex:Mext_1441 cobalamin biosynthesis protein CobW YP_001769327.1 with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism YP_001769328.1 PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: mex:Mext_1438 precorrin-3B synthase YP_001769329.1 PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: mex:Mext_1437 precorrin-8X methylmutase YP_001769330.1 TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mex:Mext_1436 precorrin-2 C20-methyltransferase YP_001769331.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mex:Mext_1435 precorrin-3B C17-methyltransferase YP_001769332.1 KEGG: mex:Mext_4722 precorrin-6x reductase; TIGRFAM: precorrin-6x reductase; PFAM: Precorrin-6x reductase CbiJ/CobK YP_001769333.1 KEGG: mex:Mext_1034 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_001769334.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: mex:Mext_1035 putative CobE protein YP_001769335.1 TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mex:Mext_1039 precorrin-4 C11-methyltransferase YP_001769337.1 PFAM: RHS protein; YD repeat-containing protein; KEGG: sdn:Sden_2443 YD repeat YP_001769338.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: ret:RHE_PA00078 putative insertion sequence ATP-binding protein, IS21 family YP_001769339.1 PFAM: Integrase catalytic region; KEGG: swi:Swit_5106 integrase, catalytic region YP_001769340.1 TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: xom:XOO_2165 RhsD protein YP_001769341.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A YP_001769342.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid YP_001769343.1 PFAM: helix-turn-helix domain protein; KEGG: mex:Mext_1041 helix-turn-helix domain protein YP_001769344.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: mex:Mext_1042 antibiotic biosynthesis monooxygenase YP_001769345.1 PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_1043 major facilitator superfamily MFS_1 YP_001769346.1 TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: mex:Mext_1044 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase YP_001769350.1 PFAM: major facilitator superfamily MFS_1; KEGG: bpd:BURPS668_2112 permeases of the major facilitator superfamily YP_001769351.1 TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain protein; tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: mex:Mext_4005 aspartyl-tRNA synthetase YP_001769352.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pla:Plav_0768 GCN5-related N-acetyltransferase YP_001769353.1 KEGG: mex:Mext_3393 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_001769354.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: mex:Mext_3392 iron-sulfur cluster assembly accessory protein YP_001769355.1 KEGG: mex:Mext_3391 hypothetical protein YP_001769356.1 KEGG: bja:bll5312 hypothetical protein YP_001769358.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_001769359.1 KEGG: rde:RD1_1633 hypothetical protein YP_001769360.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:bll3953 transcriptional regulatory protein YP_001769361.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: azc:AZC_0575 methylmalonate-semialdehyde dehydrogenase YP_001769362.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rpa:RPA3448 acyl-CoA dehydrogenase YP_001769363.1 SMART: helix-turn-helix domain protein; KEGG: sus:Acid_7034 hypothetical protein YP_001769364.1 KEGG: mex:Mext_1486 protein of unknown function DUF497 YP_001769365.1 TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: rpe:RPE_2387 3-hydroxyisobutyrate dehydrogenase YP_001769366.1 KEGG: mex:Mext_3396 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase YP_001769367.1 PFAM: Sporulation domain protein; KEGG: mex:Mext_3397 sporulation domain protein YP_001769368.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: mex:Mext_3398 beta-N-acetylhexosaminidase YP_001769369.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: rpb:RPB_2747 chromosome segregation and condensation protein ScpA YP_001769370.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: azc:AZC_1734 prokaryotic chromosome segregation and condensation protein YP_001769371.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_001769372.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; KEGG: mex:Mext_3400 twin-arginine translocation protein, TatB subunit YP_001769373.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: mex:Mext_3401 sec-independent protein translocase, TatC subunit YP_001769374.1 PFAM: protein of unknown function DUF815; KEGG: mex:Mext_4230 protein of unknown function DUF815 YP_001769375.1 KEGG: mex:Mext_1581 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; SMART: PAC repeat-containing protein YP_001769376.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: mex:Mext_4229 preprotein translocase, YajC subunit YP_001769377.1 TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: mex:Mext_4228 protein-export membrane protein SecD YP_001769378.1 TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: mex:Mext_4227 protein-export membrane protein SecF YP_001769379.1 PFAM: protein of unknown function DUF498; KEGG: mex:Mext_4226 protein of unknown function DUF498 YP_001769380.1 PFAM: Squalene/phytoene synthase; KEGG: mex:Mext_4225 squalene/phytoene synthase YP_001769381.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine YP_001769382.1 PFAM: protein of unknown function DUF1127 YP_001769383.1 KEGG: mex:Mext_3887 PDZ/DHR/GLGF domain protein YP_001769384.1 KEGG: mex:Mext_3890 hypothetical protein YP_001769385.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: mex:Mext_3891 excinuclease ABC, A subunit YP_001769386.1 TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: mex:Mext_0180 signal peptide peptidase SppA, 36K type YP_001769387.1 TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: mex:Mext_0179 integration host factor, beta subunit YP_001769388.1 KEGG: mex:Mext_0178 hypothetical protein YP_001769389.1 PFAM: ornithine cyclodeaminase/mu-crystallin; Shikimate/quinate 5-dehydrogenase; KEGG: mlo:mlr3204 ornithine cyclodeaminase YP_001769390.1 KEGG: rpe:RPE_2587 hypothetical protein YP_001769391.1 PFAM: heat shock protein Hsp20; KEGG: mex:Mext_4263 heat shock protein HSP20 YP_001769392.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: mex:Mext_0177 phosphoribosylanthranilate isomerase YP_001769393.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_001769394.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: rpa:RPA3475 putative transposase YP_001769395.1 KEGG: amr:AM1_E0006 transposase, IS4 family, putative YP_001769396.1 KEGG: mex:Mext_2739 type I secretion system ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase YP_001769397.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: mex:Mext_2740 type I secretion membrane fusion protein, HlyD family YP_001769398.1 KEGG: ret:RHE_CH00336 hypothetical protein YP_001769399.1 KEGG: xau:Xaut_5096 transposase mutator type YP_001769400.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pae:PA2319 probable transposase YP_001769401.1 PFAM: Integrase catalytic region; KEGG: sen:SACE_5091 transposase YP_001769402.1 PFAM: Integrase catalytic region; KEGG: bcn:Bcen_5102 integrase, catalytic region YP_001769403.1 KEGG: mex:Mext_4254 hypothetical protein YP_001769404.1 PFAM: UspA domain protein; KEGG: bbr:BB2667 putative universal stress protein YP_001769405.1 KEGG: cbe:Cbei_4385 putative cell wall binding repeat-containing protein YP_001769407.1 KEGG: xau:Xaut_1298 putative ABC branched-chain amino transporter, periplasmic binding protein YP_001769408.1 PFAM: cytochrome P450; KEGG: bxe:Bxe_A2330 putative cytochrome P450 hydroxylase(monooxygenase) YP_001769409.1 An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine YP_001769410.1 KEGG: xau:Xaut_3332 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969 YP_001769411.1 KEGG: rsq:Rsph17025_3837 hypothetical protein YP_001769412.1 PFAM: alpha/beta hydrolase fold; KEGG: mex:Mext_3642 alpha/beta hydrolase fold YP_001769414.1 KEGG: fre:Franean1_7146 hypothetical protein YP_001769415.1 PFAM: transposase IS3/IS911 family protein; KEGG: azc:AZC_3852 transposase YP_001769416.1 KEGG: mex:Mext_3635 molybdate ABC transporter, ATPase subunit; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase YP_001769417.1 TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: reh:H16_A3075 D-hydantoinase YP_001769418.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mex:Mext_2285 chemotaxis sensory transducer YP_001769419.1 PFAM: BLUF domain protein; KEGG: mex:Mext_0114 BLUF domain protein YP_001769420.1 KEGG: nwi:Nwi_0981 hypothetical protein YP_001769421.1 PFAM: oxidoreductase domain protein; dihydrodipicolinate reductase; SAF domain protein; KEGG: xau:Xaut_0880 SAF domain protein YP_001769422.1 KEGG: ccr:CC_0893 hypothetical protein YP_001769423.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rrs:RoseRS_0015 short-chain dehydrogenase/reductase SDR YP_001769424.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: mex:Mext_1570 acid phosphatase YP_001769425.1 PFAM: Integral membrane protein TerC; KEGG: mex:Mext_1566 integral membrane protein TerC YP_001769426.1 similar to YegS from E. coli YP_001769427.1 KEGG: mex:Mext_1568 hypothetical protein YP_001769428.1 KEGG: mex:Mext_1569 hypothetical protein YP_001769429.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_001769430.1 PFAM: gamma-glutamyltranspeptidase; KEGG: azc:AZC_0771 gamma-glutamyltranspeptidase YP_001769431.1 PFAM: inositol monophosphatase; KEGG: smd:Smed_3755 inositol-phosphate phosphatase YP_001769433.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bja:blr2219 dehydrogenase YP_001769434.1 PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: mex:Mext_2814 molybdopterin dehydrogenase FAD-binding YP_001769435.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: mex:Mext_2813 (2Fe-2S)-binding domain protein YP_001769436.1 KEGG: rle:pRL110319 putative regulator; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001769437.1 PFAM: Patatin; KEGG: mex:Mext_4578 patatin YP_001769438.1 KEGG: mex:Mext_2465 hypothetical protein YP_001769439.1 PFAM: Protein of unknown function YqcI/YcgG; KEGG: mex:Mext_2464 protein of unknown function YqcI/YcgG YP_001769440.1 PFAM: methyltransferase small; Methyltransferase type 12; KEGG: mex:Mext_2463 methyltransferase small YP_001769441.1 KEGG: mex:Mext_2462 hypothetical protein YP_001769442.1 KEGG: mex:Mext_0184 hypothetical protein YP_001769443.1 KEGG: mex:Mext_1215 hypothetical protein YP_001769444.1 catalyzes the formation of oxalyl-CoA from oxalate and Formyl-CoA YP_001769445.1 PFAM: formyl transferase domain protein; KEGG: pnu:Pnuc_0641 methionyl-tRNA formyltransferase YP_001769446.1 PFAM: Glutathione S-transferase domain; KEGG: eba:ebA4663 glutathione S-transferase family protein YP_001769447.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mex:Mext_0912 ATP-binding region ATPase domain protein YP_001769448.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: mex:Mext_0913 (2Fe-2S)-binding domain protein YP_001769449.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: mex:Mext_0914 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding YP_001769450.1 KEGG: mex:Mext_1518 uracil-DNA glycosylase superfamily YP_001769451.1 KEGG: bja:blr3152 HSP70 family molecular chaperone YP_001769452.1 PFAM: ferrochelatase; KEGG: mex:Mext_1470 ferrochelatase YP_001769453.1 KEGG: aba:Acid345_0738 hypothetical protein YP_001769455.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: mex:Mext_1472 5'-nucleotidase YP_001769456.1 TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; KEGG: mex:Mext_1473 uracil-DNA glycosylase superfamily YP_001769457.1 TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: bja:bll7116 aquaporin Z YP_001769458.1 PFAM: Myo-inositol-1-phosphate synthase; Myo-inositol-1-phosphate synthase GAPDH domain protein; KEGG: ret:RHE_CH02739 probable myo-inositol-1-phosphate synthase protein YP_001769459.1 PFAM: MaoC domain protein dehydratase; KEGG: bja:bll3460 nodulation protein N YP_001769460.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: mex:Mext_1477 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001769461.1 KEGG: smd:Smed_5314 hypothetical protein YP_001769462.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: mex:Mext_4771 GCN5-related N-acetyltransferase YP_001769463.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_001769464.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_001769465.1 KEGG: mex:Mext_3940 hypothetical protein YP_001769466.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_001769467.1 KEGG: mex:Mext_3938 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase YP_001769468.1 KEGG: mex:Mext_3937 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_001769469.1 PFAM: cytochrome B561; KEGG: rpa:RPA0507 possible cytochrome b561 YP_001769470.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_001769471.1 PFAM: Colicin V production protein; KEGG: mex:Mext_3933 colicin V production protein YP_001769472.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_001769473.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mex:Mext_3931 short-chain dehydrogenase/reductase SDR YP_001769474.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mex:Mext_4669 chemotaxis sensory transducer YP_001769475.1 KEGG: mex:Mext_3930 dihydrofolate reductase YP_001769477.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_001769478.1 KEGG: mex:Mext_4042 hypothetical protein YP_001769479.1 PFAM: NnrUfamily protein; KEGG: mex:Mext_4041 NnrU family protein YP_001769480.1 KEGG: mex:Mext_4040 hypothetical protein YP_001769481.1 PFAM: thioesterase superfamily protein; KEGG: mag:amb0828 predicted thioesterase YP_001769482.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: mex:Mext_2695 tRNA pseudouridine synthase B YP_001769483.1 PFAM: ribosome-binding factor A; KEGG: mex:Mext_2696 ribosome-binding factor A YP_001769484.1 TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; GTP-binding protein HSR1-related; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; Initiation factor 2 associated domain protein; KEGG: mex:Mext_2697 translation initiation factor IF-2 YP_001769485.1 PFAM: protein of unknown function DUF448; KEGG: mex:Mext_2698 protein of unknown function DUF448 YP_001769486.1 KEGG: mex:Mext_2699 transcription termination factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; KH type 1 domain protein; NusA domain protein; SMART: KH domain protein YP_001769487.1 PFAM: protein of unknown function DUF150; KEGG: mex:Mext_2700 protein of unknown function DUF150 YP_001769488.1 KEGG: rsq:Rsph17025_2420 DNA/RNA non-specific endonuclease YP_001769489.1 KEGG: xau:Xaut_4153 ABC transporter related; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; SMART: AAA ATPase YP_001769490.1 KEGG: mlo:mll0758 probable ATP-binding component of ABC transporter; TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; SMART: AAA ATPase YP_001769491.1 TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: xau:Xaut_4151 inner-membrane translocator YP_001769492.1 TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; KEGG: azc:AZC_1759 ABC transporter permease protein precursor YP_001769493.1 KEGG: rpa:RPA3669 putative UreA short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein precursor YP_001769494.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: ret:RHE_CH02260 putative trehalose synthase (glycosyl hydrolase) protein YP_001769495.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_001769496.1 TIGRFAM: guanine deaminase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: mex:Mext_1727 guanine deaminase YP_001769497.1 PFAM: type III effector Hrp-dependent outers; KEGG: bja:blr2930 hypothetical protein YP_001769498.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: xau:Xaut_1026 hydroxypyruvate isomerase YP_001769499.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: xau:Xaut_1027 3-hydroxyisobutyrate dehydrogenase YP_001769500.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: xau:Xaut_1029 periplasmic binding protein/LacI transcriptional regulator YP_001769501.1 PFAM: class II aldolase/adducin family protein; KEGG: rle:pRL120619 putative aldolase YP_001769502.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_001769503.1 PFAM: protein of unknown function DUF1330; KEGG: mex:Mext_1521 protein of unknown function DUF1330 YP_001769504.1 Converts isocitrate to alpha ketoglutarate YP_001769505.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: mex:Mext_3144 RNA methyltransferase, TrmH family, group 1 YP_001769506.1 KEGG: mex:Mext_3149 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II YP_001769507.1 PFAM: response regulator receiver; KEGG: mex:Mext_3150 response regulator receiver YP_001769508.1 catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol YP_001769509.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: mex:Mext_1982 low molecular weight phosphotyrosine protein phosphatase YP_001769510.1 PFAM: conserved hypothetical protein; KEGG: mex:Mext_1983 hypothetical protein YP_001769511.1 PFAM: histidinol dehydrogenase; KEGG: mex:Mext_1984 histidinol dehydrogenase YP_001769512.1 KEGG: mex:Mext_1985 hypothetical protein YP_001769513.1 KEGG: mex:Mext_1986 hypothetical protein YP_001769514.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_001769516.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine YP_001769517.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mex:Mext_4221 GCN5-related N-acetyltransferase YP_001769518.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_001769519.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_001769520.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_001769521.1 KEGG: mex:Mext_1781 hypothetical protein YP_001769522.1 PFAM: Bile acid:sodium symporter; KEGG: mlo:mlr6784 hypothetical protein YP_001769523.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: acr:Acry_1099 transcriptional regulator, LysR family YP_001769524.1 PFAM: protein of unknown function UPF0057; KEGG: mes:Meso_3465 protein of unknown function UPF0057 YP_001769525.1 KEGG: mex:Mext_2878 excinuclease ABC, C subunit; TIGRFAM: excinuclease ABC, C subunit; PFAM: Excinuclease ABC C subunit domain protein; excinuclease ABC C subunit domain protein; UvrB/UvrC protein; SMART: Helix-hairpin-helix DNA-binding class 1 YP_001769526.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: mex:Mext_2877 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001769527.1 TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: mex:Mext_2876 molybdopterin converting factor, subunit 1 YP_001769528.1 KEGG: mxa:MXAN_3888 hypothetical protein YP_001769529.1 PFAM: periplasmic solute binding protein; KEGG: mex:Mext_2875 periplasmic solute binding protein YP_001769530.1 KEGG: bja:blr2726 hypothetical protein YP_001769531.1 PFAM: isochorismatase hydrolase; KEGG: mex:Mext_1695 isochorismatase hydrolase YP_001769533.1 PFAM: carbonic anhydrase; KEGG: rpd:RPD_0785 carbonate dehydratase YP_001769534.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: xau:Xaut_2974 protein of unknown function DUF6 transmembrane YP_001769535.1 KEGG: mex:Mext_2078 hypothetical protein YP_001769536.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mex:Mext_2077 GCN5-related N-acetyltransferase YP_001769537.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_001769538.1 KEGG: mex:Mext_2569 hypothetical protein YP_001769539.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mex:Mext_2705 GCN5-related N-acetyltransferase YP_001769540.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: azc:AZC_2978 general substrate transporter YP_001769541.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: mex:Mext_0834 peptidase M20 YP_001769542.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: mex:Mext_0835 (2Fe-2S)-binding domain protein YP_001769543.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: mex:Mext_0836 molybdopterin dehydrogenase FAD-binding YP_001769544.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: mex:Mext_0837 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding YP_001769545.1 PFAM: Phosphoglycerate mutase; KEGG: gbe:GbCGDNIH1_2335 fructose-2,6-bisphosphatase YP_001769546.1 KEGG: sme:SMb20248 hypothetical protein YP_001769547.1 PFAM: Ankyrin; KEGG: bja:blr7997 hypothetical protein YP_001769548.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bja:blr7998 putative ferredoxin-NAD reductase component YP_001769549.1 KEGG: bja:bll7999 hypothetical protein YP_001769550.1 catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids YP_001769551.1 TIGRFAM: hydrolase, peptidase M42 family; PFAM: peptidase M42 family protein; KEGG: pla:Plav_0814 peptidase M42 family protein YP_001769552.1 KEGG: rru:Rru_A1988 GCN5-related N-acetyltransferase; TIGRFAM: GNAT-family acetyltransferase TIGR03103; PFAM: GCN5-related N-acetyltransferase; RimK domain protein ATP-grasp YP_001769553.1 KEGG: mex:Mext_4868 asparagine synthase family amidotransferase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); asparagine synthase family amidotransferase; PFAM: glutamine amidotransferase class-II; asparagine synthase YP_001769554.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mex:Mext_4169 ATP-binding region ATPase domain protein YP_001769555.1 PFAM: response regulator receiver; KEGG: mex:Mext_4170 response regulator receiver YP_001769556.1 KEGG: mex:Mext_1782 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001769557.1 PFAM: class II aldolase/adducin family protein; KEGG: bra:BRADO4793 L-fuculose-1-phosphate aldolase YP_001769558.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bbt:BBta_1882 putative phosphatidylethanolamine N-methyltransferase YP_001769559.1 KEGG: nwi:Nwi_0697 hypothetical protein YP_001769560.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: mex:Mext_2248 NADH:flavin oxidoreductase/NADH oxidase YP_001769561.1 PFAM: AMP-dependent synthetase and ligase; KEGG: mex:Mext_1958 AMP-dependent synthetase and ligase YP_001769562.1 PFAM: AMP-dependent synthetase and ligase; KEGG: mex:Mext_4171 AMP-dependent synthetase and ligase YP_001769563.1 PFAM: protein of unknown function DUF465; KEGG: nwi:Nwi_1004 protein of unknown function DUF465 YP_001769564.1 PFAM: protein of unknown function DUF465; KEGG: mex:Mext_1960 protein of unknown function DUF465 YP_001769565.1 KEGG: mex:Mext_1962 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_001769566.1 KEGG: mex:Mext_1963 phosphoribosylaminoimidazole carboxylase, ATPase subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp YP_001769567.1 PFAM: beta-lactamase; KEGG: rfr:Rfer_2189 beta-lactamase YP_001769568.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mex:Mext_1964 tetratricopeptide TPR_2 repeat protein YP_001769569.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rpa:RPA2506 possible acetyltransferase YP_001769570.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_001769571.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_001769572.1 KEGG: mex:Mext_1957 hypothetical protein YP_001769573.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mex:Mext_1956 exodeoxyribonuclease III Xth YP_001769574.1 PFAM: extracellular solute-binding protein family 5; KEGG: mex:Mext_1277 extracellular solute-binding protein family 5 YP_001769575.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_1278 binding-protein-dependent transport systems inner membrane component YP_001769576.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_1279 binding-protein-dependent transport systems inner membrane component YP_001769577.1 KEGG: pol:Bpro_0383 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001769578.1 KEGG: azc:AZC_1549 oligopeptide/dipeptide ABC transporter; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001769579.1 KEGG: mex:Mext_4084 hypothetical protein YP_001769580.1 TIGRFAM: membrane protein; KEGG: mex:Mext_4083 hypothetical protein YP_001769581.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: azc:AZC_2466 methyl-accepting chemotaxis sensory transducer YP_001769582.1 PFAM: cell wall hydrolase SleB; KEGG: mex:Mext_2889 cell wall hydrolase SleB YP_001769583.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_001769584.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mex:Mext_2893 ErfK/YbiS/YcfS/YnhG family protein YP_001769585.1 KEGG: mex:Mext_2227 diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; SMART: PAS domain containing protein YP_001769586.1 thiamine-pyrophosphate requiring enzyme YP_001769587.1 KEGG: mex:Mext_2597 hypothetical protein YP_001769588.1 KEGG: ccr:CC_2531 fumarylacetoacetate hydrolase family protein YP_001769589.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mex:Mext_2894 glyoxalase/bleomycin resistance protein/dioxygenase YP_001769590.1 KEGG: rpd:RPD_0919 hypothetical protein YP_001769591.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: ajs:Ajs_0231 short-chain dehydrogenase/reductase SDR YP_001769592.1 PFAM: cyclic nucleotide-binding; KEGG: mex:Mext_2896 cyclic nucleotide-binding YP_001769593.1 KEGG: mlo:mlr3255 contains weak similarity to ABC transporter (ATP-binding protein) YP_001769595.1 KEGG: mex:Mext_2898 hypothetical protein YP_001769598.1 in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media YP_001769599.1 KEGG: bja:bsr7796 hypothetical protein YP_001769600.1 PFAM: protein of unknown function DUF1328; KEGG: mex:Mext_2903 protein of unknown function DUF1328 YP_001769602.1 KEGG: mex:Mext_2902 hypothetical protein YP_001769603.1 KEGG: xau:Xaut_3311 conserved hypothetical protein, possibly involved in molybdenum cofactor biosynthesis YP_001769604.1 PFAM: beta-lactamase domain protein; KEGG: mex:Mext_2901 beta-lactamase domain protein YP_001769605.1 KEGG: mex:Mext_2900 hypothetical protein YP_001769606.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rpe:RPE_4352 AMP-dependent synthetase and ligase YP_001769607.1 KEGG: mex:Mext_1557 hypothetical protein YP_001769608.1 PFAM: TspO/MBR family protein; KEGG: mxa:MXAN_0641 TspO/MBR family protein YP_001769609.1 KEGG: rpe:RPE_0239 hypothetical protein YP_001769610.1 PFAM: extracellular solute-binding protein family 3; KEGG: pla:Plav_0286 prephenate dehydratase YP_001769611.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: mex:Mext_0820 chemotaxis sensory transducer YP_001769612.1 TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: xau:Xaut_1535 transketolase YP_001769613.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: mex:Mext_2094 TRAP C4-dicarboxylate transport system permease DctM subunit YP_001769614.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: mex:Mext_2093 TRAP dicarboxylate transporter, DctP subunit YP_001769615.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: xau:Xaut_1538 3-hydroxyisobutyrate dehydrogenase YP_001769616.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: mex:Mext_2092 transketolase central region YP_001769617.1 PFAM: Transketolase domain protein; KEGG: mex:Mext_2091 transketolase domain protein YP_001769618.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mex:Mext_2090 short-chain dehydrogenase/reductase SDR YP_001769619.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mex:Mext_3111 tetratricopeptide TPR_2 repeat protein YP_001769620.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_001769621.1 PFAM: Polyprenyl synthetase; KEGG: mex:Mext_3108 polyprenyl synthetase YP_001769622.1 PFAM: regulatory protein TetR; KEGG: bja:blr2424 transcriptional regulatory protein YP_001769623.1 PFAM: acriflavin resistance protein; KEGG: nha:Nham_1082 acriflavin resistance protein YP_001769624.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bja:blr2422 putative efflux protein YP_001769625.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; KEGG: rpb:RPB_4126 signal transduction histidine kinase YP_001769626.1 KEGG: mex:Mext_3107 hypothetical protein YP_001769627.1 PFAM: methyltransferase small; Methyltransferase type 12; KEGG: mex:Mext_3106 methyltransferase small YP_001769628.1 KEGG: ret:RHE_CH00902 hypothetical protein YP_001769629.1 PFAM: peptidase S49; KEGG: mex:Mext_3105 peptidase S49 YP_001769630.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_001769631.1 KEGG: mex:Mext_3096 glycyl-tRNA synthetase, beta subunit; TIGRFAM: glycyl-tRNA synthetase, beta subunit YP_001769632.1 KEGG: hal:VNG0920H hypothetical protein YP_001769635.1 KEGG: mex:Mext_4525 hypothetical protein YP_001769644.1 KEGG: tva:TVAG_281590 conserved hypothetical protein PROSITE: GLN_RICH PRO_RICH YP_001769645.1 TIGRFAM: methyltransferase FkbM family; KEGG: dde:Dde_2894 methyltransferase FkbM YP_001769647.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rfr:Rfer_2229 methyltransferase type 11 YP_001769648.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: afw:Anae109_1600 helix-turn-helix-domain containing protein AraC type YP_001769650.1 PFAM: Aldehyde Dehydrogenase_; KEGG: mex:Mext_3423 aldehyde dehydrogenase YP_001769651.1 PFAM: Acetamidase/Formamidase; KEGG: syf:Synpcc7942_1548 probable amidase YP_001769652.1 PFAM: periplasmic solute binding protein; KEGG: sus:Acid_0826 periplasmic solute binding protein YP_001769653.1 PFAM: ABC-3 protein; KEGG: sus:Acid_0827 ABC-3 protein YP_001769654.1 KEGG: mex:Mext_1317 hypothetical protein YP_001769655.1 KEGG: mex:Mext_1327 hypothetical protein YP_001769656.1 KEGG: bur:Bcep18194_C6834 cytochrome c, class I YP_001769657.1 PFAM: NHL repeat containing protein; KEGG: reu:Reut_A2541 putative membrane-bound dehydrogenase oxidoreductase protein YP_001769659.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: bra:BRADO2417 hypothetical protein YP_001769660.1 PFAM: transcriptional regulator domain protein; KEGG: bra:BRADO2418 putative transcriptional regulatory protein, possibly two-component response regulator YP_001769661.1 KEGG: nha:Nham_4600 feruloyl esterase YP_001769662.1 PFAM: DSBA oxidoreductase; KEGG: sit:TM1040_1347 DsbA oxidoreductase YP_001769663.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; response regulator receiver; KEGG: bja:blr2864 two-component response regulator YP_001769664.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: ret:RHE_PA00078 putative insertion sequence ATP-binding protein, IS21 family YP_001769665.1 PFAM: Integrase catalytic region; KEGG: swi:Swit_5106 integrase, catalytic region YP_001769666.1 PFAM: response regulator receiver; KEGG: bja:bsr2863 two-component response regulator YP_001769667.1 PFAM: Integrase catalytic region; KEGG: sen:SACE_5091 transposase YP_001769668.1 KEGG: fre:Franean1_7146 hypothetical protein YP_001769669.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; response regulator receiver; histidine kinase A domain protein; KEGG: sme:SMb20358 putative regulatory protein YP_001769670.1 PFAM: response regulator receiver; KEGG: sus:Acid_4296 response regulator receiver protein YP_001769671.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: smd:Smed_3764 multi-sensor hybrid histidine kinase YP_001769672.1 KEGG: sme:SMb20355 hypothetical protein YP_001769673.1 catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica YP_001769674.1 PFAM: integrase family protein; KEGG: mex:Mext_3783 integrase family protein YP_001769675.1 KEGG: mex:Mext_3890 hypothetical protein YP_001769676.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: nha:Nham_3058 transposase IS116/IS110/IS902 YP_001769677.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:blr6986 putative adenylate cyclase 3 YP_001769679.1 KEGG: mex:Mext_0131 hemolysin-type calcium-binding region YP_001769680.1 KEGG: smd:Smed_2656 adenylyl cyclase class-3/4/guanylyl cyclase YP_001769681.1 KEGG: bbt:BBta_p0039 putative ABC-type uncharacterized transport system, periplasmic component YP_001769683.1 PFAM: PRC-barrel domain protein; KEGG: mex:Mext_1105 PRC-barrel domain protein YP_001769684.1 PFAM: MscS Mechanosensitive ion channel; KEGG: sus:Acid_1634 MscS mechanosensitive ion channel YP_001769685.1 PFAM: UspA domain protein; sodium/hydrogen exchanger; KEGG: mlo:mlr2268 Na/H antiporter YP_001769687.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mex:Mext_3062 diguanylate cyclase YP_001769688.1 PFAM: response regulator receiver; KEGG: bja:bll2758 two-component response regulator YP_001769695.1 KEGG: mex:Mext_0450 hypothetical protein YP_001769696.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: mex:Mext_0135 rare lipoprotein A YP_001769698.1 KEGG: mex:Mext_4421 hypothetical protein YP_001769701.1 PFAM: regulatory protein MarR; KEGG: mex:Mext_0133 regulatory protein MarR YP_001769702.1 KEGG: mex:Mext_3511 hypothetical protein YP_001769703.1 KEGG: rpd:RPD_0919 hypothetical protein YP_001769704.1 PFAM: gamma-glutamyltranspeptidase; KEGG: mpt:Mpe_A3055 gamma-glutamyltransferase YP_001769705.1 PFAM: extracellular solute-binding protein family 5; KEGG: azc:AZC_0777 ABC transporter substrate binding protein YP_001769706.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_0775 ABC transporter permease protein YP_001769707.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_0774 ABC transporter permease protein YP_001769708.1 KEGG: azc:AZC_0773 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001769709.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: azc:AZC_0772 oligopeptide ABC transporter ATP-binding protein YP_001769710.1 KEGG: mex:Mext_0802 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001769711.1 PFAM: protein of unknown function DUF1458; KEGG: rxy:Rxyl_1669 protein of unknown function DUF1458 YP_001769713.1 PFAM: ApbE family lipoprotein; KEGG: bbt:BBta_6013 nitrous oxide reductase accessory protein NosX (required for nitrous oxide reduction), ApbE-like lipoprotein YP_001769714.1 PFAM: NosL family protein; KEGG: bbt:BBta_6012 nitrous oxide reductase accessory protein NosL (required for nitrous oxide reduction) YP_001769715.1 KEGG: bbt:BBta_6011 copper ABC transporter, permease protein NosY YP_001769716.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbt:BBta_6010 copper ABC transporter, ATP-binding protein NosF YP_001769717.1 PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: bbt:BBta_6009 copper ABC transporter, periplasmic binding protein NosD YP_001769718.1 reduces nitrous oxide to nitrogen YP_001769719.1 PFAM: FMN-binding domain protein; KEGG: bbt:BBta_6007 nitrous oxide reductase regulatory protein NosR YP_001769720.1 PFAM: Rubrerythrin; KEGG: bbt:BBta_6006 hypothetical protein YP_001769721.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine YP_001769722.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: mex:Mext_0968 transcriptional regulator, Rrf2 family YP_001769723.1 PFAM: response regulator receiver; KEGG: bja:bll2758 two-component response regulator YP_001769724.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mex:Mext_0039 HAD-superfamily hydrolase, subfamily IA, variant 3 YP_001769725.1 PFAM: glycoside hydrolase family 65 domain protein; glycoside hydrolase family 65 central catalytic; KEGG: mex:Mext_0038 kojibiose phosphorylase YP_001769726.1 PFAM: protein of unknown function DUF1476; KEGG: rru:Rru_A0714 protein of unknown function DUF1476 YP_001769728.1 PFAM: phosphoribosyltransferase; Erythromycin esterase; KEGG: pna:Pnap_2186 erythromycin esterase YP_001769729.1 KEGG: mex:Mext_3501 hypothetical protein YP_001769730.1 KEGG: mex:Mext_0050 hypothetical protein YP_001769731.1 PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; phosphopantetheine-binding; KEGG: pol:Bpro_3393 AMP-dependent synthetase and ligase YP_001769732.1 PFAM: AMP-dependent synthetase and ligase; KEGG: nmu:Nmul_A1417 AMP-dependent synthetase and ligase YP_001769735.1 KEGG: mex:Mext_1356 cytochrome c class I YP_001769736.1 PFAM: UspA domain protein; KEGG: mex:Mext_1355 UspA domain protein YP_001769737.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: ret:RHE_PD00022 hypothetical protein YP_001769738.1 KEGG: rpc:RPC_1153 hypothetical protein YP_001769739.1 PFAM: protein of unknown function DUF534; KEGG: bbt:BBta_p0039 putative ABC-type uncharacterized transport system, periplasmic component YP_001769741.1 KEGG: mex:Mext_3805 hypothetical protein YP_001769742.1 KEGG: mex:Mext_3583 hypothetical protein YP_001769743.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: rru:Rru_B0010 resolvase YP_001769744.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pcr:Pcryo_0130 ubiquinone biosynthesis O-methyltransferase YP_001769745.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: azo:azo3595 hypothetical protein YP_001769746.1 PFAM: glycosyl transferase family 28; KEGG: gvi:gll2420 hypothetical protein YP_001769750.1 PFAM: Integrase catalytic region; KEGG: sen:SACE_5091 transposase YP_001769751.1 KEGG: mex:Mext_0780 hypothetical protein YP_001769752.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: mex:Mext_0779 5-formyltetrahydrofolate cyclo-ligase YP_001769754.1 PFAM: protein of unknown function DUF534; KEGG: rle:pRL110111 hypothetical protein YP_001769755.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: mex:Mext_0183 RNA methyltransferase, TrmH family, group 3 YP_001769756.1 PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: mex:Mext_3081 CHAD domain containing protein YP_001769757.1 TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; KEGG: rpc:RPC_1279 phosphonate metabolism, 1,5-bisphosphokinase (PRPP-forming) PhnN YP_001769758.1 TIGRFAM: phosphonate metabolism protein PhnM; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bbt:BBta_5842 putative metal-dependent hydrolase involved in phosphonate metabolism YP_001769759.1 KEGG: xau:Xaut_1311 phosphonate C-P lyase system protein PhnL; TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; SMART: AAA ATPase YP_001769760.1 KEGG: xau:Xaut_1312 phosphonate C-P lyase system protein PhnK; TIGRFAM: phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter related; SMART: AAA ATPase YP_001769761.1 PFAM: phosphonate metabolism PhnJ; KEGG: azc:AZC_3395 putative C-P (carbon-phosphorus) lyase component protein YP_001769762.1 PFAM: phosphonate metabolism; KEGG: rpb:RPB_4091 phosphonate metabolism YP_001769763.1 TIGRFAM: phosphonate C-P lyase system protein PhnH; PFAM: phosphonate metabolism; KEGG: xau:Xaut_1315 phosphonate metabolism YP_001769764.1 TIGRFAM: phosphonate C-P lyase system protein PhnG; PFAM: phosphonate metabolism PhnG; KEGG: azc:AZC_3392 phosphonate metabolism protein YP_001769765.1 TIGRFAM: phosphonates metabolism transcriptional regulator PhnF; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: xau:Xaut_1317 transcriptional regulator, GntR family YP_001769766.1 KEGG: pna:Pnap_1125 hypothetical protein YP_001769767.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_1055 phosphonate uptake transporter YP_001769768.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_1056 phosphonate uptake transporter YP_001769769.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter, periplasmic phosphonate binding protein; KEGG: azc:AZC_1057 phosphonate-binding periplasmic protein YP_001769770.1 KEGG: rpa:RPA0700 PhnC protein, phosphonate ABC transporter, ATP-binding component; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_001769771.1 TIGRFAM: phosphonate metabolim protein, transferase hexapeptide repeat family; KEGG: xau:Xaut_1753 putative acetyltransferase YP_001769772.1 TIGRFAM: phosphonate metabolism protein; PFAM: protein of unknown function DUF1045; KEGG: azc:AZC_0704 hypothetical protein YP_001769773.1 TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; KEGG: mta:Moth_2503 selenocysteine-specific translation elongation factor YP_001769774.1 PFAM: integrase family protein; KEGG: bps:BPSL2586 putative phage integrase YP_001769775.1 PFAM: transposase IS4 family protein; KEGG: gdi:GDI1551 putative transposase YP_001769776.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr7101 probable ABC transporter permease protein YP_001769777.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bra:BRADO1220 probable ABC transporter permease protein YP_001769778.1 PFAM: extracellular solute-binding protein family 1; KEGG: bra:BRADO1221 probable ABC transporter substrate-binding protein YP_001769779.1 KEGG: mex:Mext_4207 collagen triple helix repeat YP_001769780.1 KEGG: pol:Bpro_3971 hypothetical protein YP_001769782.1 KEGG: mex:Mext_2546 hypothetical protein YP_001769783.1 KEGG: tcr:509149.60 60S ribosomal protein L19 YP_001769784.1 KEGG: mex:Mext_3026 hypothetical protein YP_001769785.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mex:Mext_1926 ATP-binding region ATPase domain protein YP_001769786.1 PFAM: domain of unknown function DUF1745; KEGG: mex:Mext_1925 domain of unknown function DUF1745 YP_001769787.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: mex:Mext_4220 response regulator receiver YP_001769788.1 PFAM: carbon starvation protein CstA; KEGG: mex:Mext_2017 carbon starvation protein CstA YP_001769789.1 PFAM: protein of unknown function DUF466; KEGG: mex:Mext_2016 protein of unknown function DUF466 YP_001769790.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rpc:RPC_3194 protein of unknown function DUF6, transmembrane YP_001769791.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: tfu:Tfu_0100 RNA binding S1:resolvase, RNase H-like fold YP_001769792.1 KEGG: mex:Mext_2559 hypothetical protein YP_001769793.1 TIGRFAM: phasin; PFAM: Phasin 2 family protein; KEGG: mex:Mext_2560 phasin YP_001769794.1 KEGG: mlo:mll6540 two component histidine protein kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001769795.1 KEGG: rsq:Rsph17025_2221 ABC-type branched-chain amino acid transport systems periplasmic component-like protein YP_001769796.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rso:RSp0075 putative alpha-ketoglutarate permease transmembrane protein YP_001769798.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_001769799.1 PFAM: protein of unknown function DUF485; KEGG: mex:Mext_2563 protein of unknown function DUF485 YP_001769800.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: mex:Mext_2564 SSS sodium solute transporter superfamily YP_001769801.1 KEGG: mex:Mext_1856 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase YP_001769802.1 PFAM: glycosyl transferase group 1; KEGG: mex:Mext_1857 glycosyl transferase group 1 YP_001769803.1 PFAM: polysaccharide export protein; KEGG: mex:Mext_1858 polysaccharide export protein YP_001769804.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: mex:Mext_1859 lipopolysaccharide biosynthesis protein YP_001769805.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mex:Mext_2002 ErfK/YbiS/YcfS/YnhG family protein YP_001769806.1 PFAM: protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein; KEGG: gvi:gll3552 hypothetical protein YP_001769807.1 PFAM: protein of unknown function DUF1696; KEGG: mex:Mext_3944 protein of unknown function DUF1696 YP_001769808.1 PFAM: protein of unknown function DUF1674; KEGG: mex:Mext_0550 protein of unknown function DUF1674 YP_001769809.1 PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; methyltransferase small; Methyltransferase type 11; KEGG: mex:Mext_0551 Fmu (Sun) domain protein YP_001769810.1 PFAM: Heparinase II/III family protein; KEGG: mex:Mext_2567 heparinase II/III family protein YP_001769811.1 KEGG: mex:Mext_2566 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: MGS domain protein; AICARFT/IMPCHase bienzyme formylation region YP_001769812.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mex:Mext_1748 diguanylate cyclase YP_001769813.1 KEGG: azc:AZC_0737 uncharacterized membrane-anchored protein YP_001769814.1 KEGG: xau:Xaut_4672 hypothetical protein YP_001769816.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: bja:bll1209 ABC transporter ATP-binding protein YP_001769817.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bam:Bamb_1486 peptidase M20 YP_001769818.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_0810 peptide ABC transporter permease protein YP_001769819.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_0811 peptide ABC transporter permease protein YP_001769820.1 PFAM: extracellular solute-binding protein family 5; KEGG: azc:AZC_0812 peptide ABC transporter periplasmic peptide-binding protein YP_001769821.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: azc:AZC_0813 transcriptional regulator YP_001769822.1 KEGG: mex:Mext_0194 hypothetical protein YP_001769824.1 KEGG: mex:Mext_2777 hypothetical protein YP_001769825.1 KEGG: mex:Mext_1897 hypothetical protein YP_001769826.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: mex:Mext_4164 cold-shock protein DNA-binding YP_001769827.1 KEGG: mex:Mext_0887 hypothetical protein YP_001769828.1 KEGG: mex:Mext_4165 hypothetical protein YP_001769829.1 KEGG: mex:Mext_4166 hypothetical protein YP_001769831.1 KEGG: mex:Mext_0360 hypothetical protein YP_001769832.1 KEGG: mex:Mext_0092 hypothetical protein YP_001769833.1 KEGG: mex:Mext_0093 hypothetical protein YP_001769834.1 KEGG: smd:Smed_6357 hypothetical protein YP_001769835.1 KEGG: mex:Mext_0094 putative cytochrome c oxidase subunit III protein YP_001769836.1 TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; KEGG: mex:Mext_0095 cytochrome c oxidase, subunit I YP_001769837.1 KEGG: mex:Mext_0096 cytochrome c oxidase, subunit II; TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I YP_001769838.1 PFAM: cytochrome c class I; KEGG: mex:Mext_0097 cytochrome c class I YP_001769839.1 SMART: extracellular solute-binding protein family 3; KEGG: mex:Mext_0098 extracellular solute-binding protein family 3 YP_001769840.1 TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: mex:Mext_0099 PQQ-dependent dehydrogenase, methanol/ethanol family YP_001769841.1 PFAM: regulatory protein TetR; KEGG: bra:BRADO3290 putative transcriptional regulator, TetR family YP_001769842.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bra:BRADO3291 putative oxidoreductase, short-chain dehydrogenase/reductase family YP_001769843.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mca:MCA2813 4Fe-4S binding domain protein YP_001769844.1 KEGG: fal:FRAAL1385 hypothetical protein YP_001769845.1 PFAM: acyltransferase 3; KEGG: ret:RHE_CH03393 probable acetyltransferase protein YP_001769846.1 KEGG: xcb:XC_3757 methyltransferase; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein YP_001769848.1 KEGG: gdi:GDI2531 hypothetical protein YP_001769850.1 PFAM: Lytic transglycosylase catalytic; KEGG: rpa:RPA3145 possible transglycosylase SLT domain YP_001769853.1 PFAM: Hemolysin-type calcium-binding region; KEGG: bja:bll7673 hypothetical protein YP_001769854.1 PFAM: helix-turn-helix domain protein; KEGG: acr:Acry_2262 helix-turn-helix domain protein YP_001769855.1 KEGG: bja:bll1339 hypothetical protein YP_001769856.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_001769857.1 TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: bam:Bamb_5904 dihydroorotate dehydrogenase family protein YP_001769858.1 PFAM: Oxidoreductase FAD-binding domain protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: bam:Bamb_5905 oxidoreductase FAD-binding domain protein YP_001769859.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rso:RS01910 probable transport transmembrane protein YP_001769862.1 KEGG: mex:Mext_3987 hypothetical protein YP_001769863.1 PFAM: Cupin domain protein; Cupin 2 conserved barrel domain protein; KEGG: mex:Mext_1173 cupin 2 conserved barrel domain protein YP_001769864.1 KEGG: nwi:Nwi_2991 hypothetical protein YP_001769865.1 PFAM: ABC-1 domain protein; KEGG: mex:Mext_1021 ABC-1 domain protein YP_001769866.1 KEGG: mex:Mext_3840 tetratricopeptide TPR_4 YP_001769867.1 PFAM: glycosyl transferase family 51; KEGG: mex:Mext_4776 penicillin-binding protein, 1A family YP_001769868.1 KEGG: rme:Rmet_1640 putative UreA/short-chain amide ABC transporter YP_001769869.1 KEGG: acr:Acry_2893 hypothetical protein YP_001769870.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium have one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thin flagellum YP_001769871.1 PFAM: flagellar basal body-associated protein FliL; KEGG: mex:Mext_0626 flagellar basal body-associated protein FliL YP_001769872.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_2874 ABC transporter related YP_001769873.1 PFAM: glycosyl transferase family 2; KEGG: mex:Mext_0347 glycosyl transferase family 2 YP_001769875.1 KEGG: mex:Mext_1782 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001769876.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: rpa:RPA1696 hypothetical protein YP_001769877.1 PFAM: cytochrome c class I; KEGG: mex:Mext_0924 cytochrome c class I YP_001769878.1 PFAM: FAD linked oxidase domain protein; KEGG: mex:Mext_0923 FAD linked oxidase domain protein YP_001769879.1 KEGG: mex:Mext_0616 hypothetical protein YP_001769880.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: azc:AZC_1143 putative methyltransferase YP_001769881.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: azc:AZC_4484 amine oxidase precursor YP_001769885.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: mex:Mext_4798 2-alkenal reductase YP_001769886.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mex:Mext_1782 PAS sensor protein YP_001769887.1 MDM; functions in conversion of succinate to propionate YP_001769888.1 PFAM: peptidase M23B; KEGG: mex:Mext_1023 peptidase M23B YP_001769890.1 PFAM: protein of unknown function DUF820; KEGG: ttj:TTHA1711 hypothetical protein YP_001769891.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: azc:AZC_3275 oxidoreductase with iron-sulfur subunit YP_001769892.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bra:BRADO2413 isoquinoline 1-oxidoreductase beta subunit YP_001769893.1 KEGG: reh:H16_A3576 cytochrome c553 YP_001769894.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome c sulphide dehydrogenase flavin-binding; KEGG: bja:bll2735 flavocytochrome c flavoprotein subunit YP_001769895.1 KEGG: rpa:RPA0183 hypothetical protein YP_001769896.1 KEGG: atc:AGR_pTi_287 hypothetical protein YP_001769897.1 KEGG: rpa:RPA3629 hypothetical protein YP_001769900.1 responsible for transport of beta-1,2-glucans from the cytoplasm to periplasm; inner membrane ABC transporter permease component; Cgt; ChvA; NdvA YP_001769901.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: mex:Mext_4830 MotA/TolQ/ExbB proton channel YP_001769902.1 PFAM: OmpA/MotB domain protein; KEGG: mex:Mext_4831 OmpA/MotB domain protein YP_001769903.1 PFAM: SCP-like extracellular; KEGG: mex:Mext_4832 SCP-like extracellular YP_001769904.1 PFAM: MscS Mechanosensitive ion channel; KEGG: mex:Mext_4833 MscS mechanosensitive ion channel YP_001769905.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mex:Mext_4834 HNH endonuclease YP_001769907.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: gdi:GDI2584 3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase YP_001769908.1 PFAM: porin; KEGG: mex:Mext_4835 porin YP_001769909.1 KEGG: mex:Mext_4836 porin opacity type YP_001769910.1 PFAM: porin opacity type; KEGG: mex:Mext_4837 hypothetical protein YP_001769911.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_001769912.1 KEGG: rpc:RPC_2799 hypothetical protein YP_001769914.1 PFAM: PfkB domain protein; KEGG: psb:Psyr_2510 carbohydrate kinase, PfkB YP_001769915.1 KEGG: bja:blr3923 KHG-KDPG bifunctional aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase YP_001769916.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: mex:Mext_2363 5-formyltetrahydrofolate cyclo-ligase YP_001769917.1 PFAM: metallophosphoesterase; KEGG: mex:Mext_2362 metallophosphoesterase YP_001769918.1 KEGG: mex:Mext_2361 hypothetical protein YP_001769919.1 PFAM: OmpA/MotB domain protein; KEGG: mex:Mext_2360 OmpA/MotB domain protein YP_001769920.1 KEGG: mex:Mext_2028 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_001769921.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: azc:AZC_4114 alpha amylase YP_001769922.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_001769923.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mex:Mext_0381 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_001769924.1 KEGG: mex:Mext_0382 hypothetical protein YP_001769925.1 KEGG: mex:Mext_0383 hypothetical protein YP_001769926.1 KEGG: mex:Mext_0384 hypothetical protein YP_001769927.1 KEGG: mex:Mext_0385 molybdopterin-guanine dinucleotide biosynthesis protein A YP_001769928.1 KEGG: mex:Mext_0386 hypothetical protein YP_001769929.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: mex:Mext_0387 cytoplasmic chaperone TorD family protein YP_001769930.1 TIGRFAM: formate dehydrogenase region TAT target; KEGG: mex:Mext_0388 formate dehydrogenase region TAT target YP_001769931.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mex:Mext_0389 molybdopterin oxidoreductase YP_001769932.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mex:Mext_0390 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_001769933.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: mex:Mext_0391 formate dehydrogenase, gamma subunit YP_001769934.1 KEGG: mex:Mext_0392 hypothetical protein YP_001769935.1 KEGG: mex:Mext_0393 hypothetical protein YP_001769936.1 PFAM: phospholipase/Carboxylesterase; KEGG: azc:AZC_0243 putative esterase YP_001769937.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mex:Mext_2153 glyoxalase/bleomycin resistance protein/dioxygenase YP_001769938.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mex:Mext_2152 LysR substrate-binding YP_001769939.1 KEGG: mex:Mext_3156 hypothetical protein YP_001769940.1 KEGG: nha:Nham_0244 hypothetical protein YP_001769941.1 PFAM: protein of unknown function DUF81; KEGG: rpc:RPC_0741 protein of unknown function DUF81 YP_001769942.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: mex:Mext_3246 Sel1 domain protein repeat-containing protein YP_001769943.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: xau:Xaut_3063 putative transcriptional regulator, MerR family YP_001769944.1 PFAM: WD-40 repeat protein; cytochrome c class I; KEGG: mex:Mext_2844 WD-40 repeat protein YP_001769945.1 TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: mex:Mext_3167 riboflavin synthase, alpha subunit YP_001769946.1 TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: mex:Mext_3168 riboflavin biosynthesis protein RibD YP_001769947.1 PFAM: ATP-cone domain protein; KEGG: mex:Mext_3169 ATP-cone domain protein YP_001769948.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_001769949.1 PFAM: SlyX family protein; KEGG: mex:Mext_3034 SlyX family protein YP_001769950.1 PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: mex:Mext_1377 peptidoglycan-binding domain 1 protein YP_001769951.1 KEGG: mex:Mext_2922 hypothetical protein YP_001769952.1 PFAM: protein of unknown function DUF461; nuclear export factor GLE1; KEGG: mex:Mext_1378 protein of unknown function DUF461 YP_001769953.1 PFAM: peptidase M29 aminopeptidase II; KEGG: mex:Mext_3472 peptidase M29 aminopeptidase II YP_001769954.1 KEGG: mex:Mext_3473 hypothetical protein YP_001769955.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: acr:Acry_2211 carbon-monoxide dehydrogenase (acceptor) YP_001769956.1 PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: oan:Oant_3441 glycosyl transferase group 1 YP_001769957.1 KEGG: oan:Oant_3440 putative membrane-anchored protein YP_001769960.1 KEGG: bur:Bcep18194_A5633 hypothetical protein YP_001769961.1 KEGG: bpd:BURPS668_3246 capsular polysaccharide biosynthesis protein YP_001769962.1 KEGG: swi:Swit_3996 hypothetical protein YP_001769963.1 PFAM: GSCFA domain protein; KEGG: swi:Swit_3997 GSCFA YP_001769964.1 KEGG: gbe:GbCGDNIH1_1931 O-methyltransferase YP_001769965.1 KEGG: dol:Dole_1287 capsular polysaccharide biosynthesis protein-like protein YP_001769967.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bbt:BBta_6807 ATPase, ParA type YP_001769968.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: smd:Smed_3742 GntR domain protein YP_001769969.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: mes:Meso_2516 6-phosphogluconate dehydrogenase, NAD-binding YP_001769970.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xau:Xaut_0174 polar amino acid ABC transporter, inner membrane subunit YP_001769971.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pna:Pnap_2073 polar amino acid ABC transporter, inner membrane subunit YP_001769972.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azc:AZC_3281 ABC transporter YP_001769973.1 PFAM: extracellular solute-binding protein family 3; KEGG: pna:Pnap_2071 extracellular solute-binding protein, family 3 YP_001769974.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity YP_001769975.1 PFAM: PfkB domain protein; KEGG: dra:DR_A0055 ribokinase YP_001769976.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: rsq:Rsph17025_3907 glucose/sorbosone dehydrogenase-like protein YP_001769977.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: nha:Nham_1181 twin-arginine translocation pathway signal YP_001769978.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: pae:PA1602 probable oxidoreductase YP_001769979.1 KEGG: gfo:GFO_1672 conserved hypothetical protein, secreted YP_001769980.1 PFAM: Asparaginase/glutaminase; KEGG: mex:Mext_4329 asparaginase YP_001769981.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: mex:Mext_2762 single-stranded-DNA-specific exonuclease RecJ YP_001769982.1 PFAM: NAD(P) transhydrogenase beta subunit; KEGG: mex:Mext_2761 NAD(P)(+) transhydrogenase (AB-specific) YP_001769983.1 KEGG: mex:Mext_2760 PntAB, NAD(P) transhydrogenase, alpha2 subunit YP_001769984.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: mex:Mext_2759 NAD(P)(+) transhydrogenase (AB-specific) YP_001769985.1 KEGG: mex:Mext_2758 hypothetical protein YP_001769986.1 PFAM: ABC-1 domain protein; KEGG: mex:Mext_2757 ABC-1 domain protein YP_001769987.1 PFAM: protein of unknown function DUF156; KEGG: bcy:Bcer98_2404 protein of unknown function DUF156 YP_001769988.1 TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: mex:Mext_2754 oligoendopeptidase, PepF/M3 family YP_001769989.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mex:Mext_2753 sigma-54 factor interaction domain-containing protein YP_001769990.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: mex:Mext_2752 peptidoglycan-binding domain 1 protein YP_001769991.1 PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; protein of unknown function DUF882; Peptidase M15A; KEGG: mex:Mext_2751 protein of unknown function DUF882 YP_001769992.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_3439 ABC transporter related YP_001769993.1 PFAM: ABC-2 type transporter; KEGG: mex:Mext_3438 ABC-2 type transporter YP_001769994.1 PFAM: Glutathione S-transferase domain; KEGG: rru:Rru_A3193 glutathione S-transferase-like YP_001769995.1 PFAM: Phosphoglycerate mutase; KEGG: psa:PST_2428 fructose-2,6-bisphosphatase YP_001769996.1 TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mex:Mext_3436 phytoene desaturase YP_001769997.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: mex:Mext_3435 phospholipid/glycerol acyltransferase YP_001769998.1 PFAM: glycosyl transferase family 2; KEGG: mex:Mext_3434 glycosyl transferase family 2 YP_001769999.1 PFAM: Amidase; KEGG: pfl:PFL_3680 hypothetical protein YP_001770000.1 PFAM: protein of unknown function DUF82; KEGG: rso:RS02617 hypothetical protein YP_001770001.1 PFAM: protein of unknown function DUF427; KEGG: mex:Mext_4401 protein of unknown function DUF427 YP_001770002.1 KEGG: mex:Mext_4400 HAD-superfamily hydrolase, subfamily IIB; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; Haloacid dehalogenase domain protein hydrolase type 3 YP_001770003.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: mex:Mext_4646 peptidylprolyl isomerase FKBP-type YP_001770004.1 PFAM: porin; KEGG: azc:AZC_3726 outer membrane protein Omp31 precursor YP_001770005.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_1576 ABC transporter related YP_001770006.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_1577 ABC transporter related YP_001770007.1 PFAM: inner-membrane translocator; KEGG: rpc:RPC_4169 inner-membrane translocator YP_001770008.1 PFAM: inner-membrane translocator; KEGG: rpa:RPA4035 possible ABC transport system permease protein YP_001770009.1 KEGG: rpb:RPB_1574 ABC transporter, periplasmic branched chain amino acid binding protein YP_001770010.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: rfr:Rfer_2596 transcriptional regulator, IclR family YP_001770012.1 KEGG: rso:RSc0232 hypothetical protein YP_001770013.1 PFAM: helix-turn-helix domain protein; CI repressor; KEGG: ret:RHE_PF00441 hypothetical protein YP_001770014.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: ang:An08g09680 hypothetical protein YP_001770015.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbr:BB1113 probable short chain dehydrogenase YP_001770016.1 PFAM: protein of unknown function DUF849; KEGG: reu:Reut_B5853 protein of unknown function DUF849, prokaryotic YP_001770017.1 PFAM: helix-turn-helix domain protein; KEGG: azc:AZC_0013 putative transcriptional regulator YP_001770018.1 Transfers the fatty acyl group on membrane lipoproteins YP_001770019.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: mex:Mext_3207 CBS domain containing protein YP_001770020.1 PFAM: protein of unknown function UPF0054; KEGG: mex:Mext_3206 protein of unknown function UPF0054 YP_001770021.1 PFAM: PhoH family protein; KEGG: mex:Mext_3205 PhoH family protein YP_001770022.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_001770023.1 KEGG: mex:Mext_2704 hypothetical protein YP_001770024.1 KEGG: mex:Mext_2703 hypothetical protein YP_001770025.1 KEGG: mex:Mext_2702 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region YP_001770026.1 PFAM: Aldehyde Dehydrogenase_; KEGG: rfr:Rfer_0880 aldehyde dehydrogenase YP_001770027.1 KEGG: mex:Mext_2692 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_001770028.1 PFAM: Aldose 1-epimerase; KEGG: mex:Mext_2623 aldose 1-epimerase YP_001770029.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: mex:Mext_4288 tyrosine recombinase XerC YP_001770030.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rru:Rru_A2785 ABC transporter component YP_001770031.1 PFAM: basic membrane lipoprotein; KEGG: sil:SPO2802 bmp family protein YP_001770032.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; Phytochrome central region domain protein; PAS fold-2 domain protein; PAS fold domain protein; KEGG: mex:Mext_4081 histidine kinase dimerisation/phosphoacceptor YP_001770033.1 Essential for recycling GMP and indirectly, cGMP YP_001770034.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: mex:Mext_1999 domain of unknown function DUF1732 YP_001770035.1 PFAM: aminodeoxychorismate lyase; KEGG: mex:Mext_0560 aminodeoxychorismate lyase YP_001770037.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: mex:Mext_0559 3-oxoacyl-(acyl-carrier-protein) synthase 2 YP_001770038.1 carries the fatty acid chain in fatty acid biosynthesis YP_001770039.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: mex:Mext_0557 3-oxoacyl-(acyl-carrier-protein) reductase YP_001770040.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: mex:Mext_0556 malonyl CoA-acyl carrier protein transacylase YP_001770041.1 KEGG: mlo:mlr0116 integral membrane lipid kinase-like protein; TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA YP_001770042.1 KEGG: mex:Mext_0737 hypothetical protein YP_001770043.1 PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; KEGG: bur:Bcep18194_A3874 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_001770044.1 KEGG: mex:Mext_3805 hypothetical protein YP_001770046.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_001770047.1 KEGG: mex:Mext_1252 hypothetical protein YP_001770048.1 PFAM: acyltransferase 3; KEGG: mex:Mext_1250 acyltransferase 3 YP_001770049.1 KEGG: mex:Mext_0614 GatB/YqeY YP_001770050.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase small chain; KEGG: mex:Mext_0615 carbamoyl-phosphate synthase, small subunit YP_001770051.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mex:Mext_3027 NAD-dependent epimerase/dehydratase YP_001770052.1 KEGG: mex:Mext_0643 chemotaxis MotA protein YP_001770053.1 PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: mex:Mext_0642 flagellar motor switch protein FliM YP_001770054.1 KEGG: mex:Mext_0641 hypothetical protein YP_001770055.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: mex:Mext_0639 flagellar motor switch protein FliN YP_001770056.1 PFAM: flagellar motor switch protein FliG; KEGG: mex:Mext_0638 flagellar motor switch protein FliG YP_001770057.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thin flagella YP_001770058.1 KEGG: mex:Mext_0636 hypothetical protein YP_001770059.1 PFAM: transcriptional regulator domain protein; KEGG: mex:Mext_0635 transcriptional regulator domain protein YP_001770060.1 PFAM: Lytic transglycosylase catalytic; KEGG: mex:Mext_0634 lytic transglycosylase catalytic YP_001770061.1 KEGG: mex:Mext_0633 hypothetical protein YP_001770062.1 a periplasmic protein that interacts with and stabilizes MotB; in Rhizobium, interactions between MotB and MotC at the periplasmic surface of the motor control the energy flux or the energy coupling that drives flagellar rotation YP_001770063.1 PFAM: OmpA/MotB domain protein; KEGG: mex:Mext_0631 OmpA/MotB domain protein YP_001770064.1 KEGG: mex:Mext_0630 hypothetical protein YP_001770065.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_001770066.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit YP_001770067.1 PFAM: isochorismatase hydrolase; KEGG: mex:Mext_3904 nicotinamidase YP_001770068.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mex:Mext_3903 alcohol dehydrogenase zinc-binding domain protein YP_001770069.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: mex:Mext_3901 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family YP_001770070.1 PFAM: Patatin; KEGG: mex:Mext_2263 patatin YP_001770071.1 PFAM: CBS domain containing protein; KEGG: mex:Mext_2262 CBS domain containing protein YP_001770072.1 PFAM: Rhomboid family protein; KEGG: mex:Mext_2260 rhomboid family protein YP_001770073.1 PFAM: protein of unknown function DUF1457; KEGG: mex:Mext_2259 protein of unknown function DUF1457 YP_001770074.1 PFAM: type IV pilus assembly PilZ; KEGG: mex:Mext_2258 type IV pilus assembly PilZ YP_001770075.1 PFAM: formate-tetrahydrofolate ligase FTHFS; KEGG: mex:Mext_0414 formate--tetrahydrofolate ligase YP_001770076.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate YP_001770079.1 KEGG: xau:Xaut_2298 tetratricopeptide TPR_2 repeat protein YP_001770080.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mex:Mext_4078 glyoxalase/bleomycin resistance protein/dioxygenase YP_001770081.1 PFAM: inner-membrane translocator; KEGG: azc:AZC_4515 putative ABC transporter, permease protein precursor YP_001770082.1 PFAM: inner-membrane translocator; KEGG: mag:amb2326 branched-chain amino acid ABC-type transport system, permease components YP_001770083.1 KEGG: xau:Xaut_1437 extracellular ligand-binding receptor YP_001770084.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nha:Nham_1673 ABC transporter related YP_001770085.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA2275 putative branched-chain amino acid transport system ATP-binding protein YP_001770086.1 PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_1558 major facilitator superfamily MFS_1 YP_001770087.1 PFAM: ChaC family protein; AIG2 family protein; KEGG: rpd:RPD_0947 ChaC-like protein YP_001770088.1 KEGG: mex:Mext_1590 conserved hypothetical proteinn YP_001770089.1 PFAM: creatinase; peptidase M24; KEGG: mex:Mext_4480 peptidase M24 YP_001770090.1 PFAM: acriflavin resistance protein; KEGG: mlo:mll1426 probable RND efflux transporter YP_001770091.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mlo:mll1427 probable RND efflux membrane fusion protein precursor YP_001770092.1 PFAM: regulatory protein TetR; KEGG: fal:FRAAL5169 putative TetR-family transcriptional regulator YP_001770093.1 KEGG: mex:Mext_1193 hypothetical protein YP_001770094.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: xau:Xaut_0058 integral membrane sensor hybrid histidine kinase YP_001770095.1 KEGG: mex:Mext_2108 peptidase S24 and S26 domain protein YP_001770096.1 PFAM: protein of unknown function DUF952; KEGG: mex:Mext_2107 protein of unknown function DUF952 YP_001770097.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_001770098.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: xau:Xaut_1467 MATE efflux family protein YP_001770099.1 KEGG: mex:Mext_3152 hypothetical protein YP_001770100.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: mex:Mext_3153 alpha/beta hydrolase fold-3 domain protein YP_001770101.1 KEGG: mex:Mext_1611 hypothetical protein YP_001770102.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: reu:Reut_B4643 mandelate racemase/muconate lactonizing enzyme YP_001770103.1 PFAM: major facilitator superfamily MFS_1; KEGG: rpc:RPC_4631 D-galactonate transporter YP_001770104.1 KEGG: azc:AZC_2636 galactarate dehydratase; TIGRFAM: galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein YP_001770105.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mex:Mext_4582 formate dehydrogenase, alpha subunit YP_001770106.1 PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: mex:Mext_4581 respiratory-chain NADH dehydrogenase domain 51 kDa subunit YP_001770107.1 KEGG: mex:Mext_4580 hypothetical protein YP_001770108.1 PFAM: UspA domain protein; KEGG: mex:Mext_1355 UspA domain protein YP_001770109.1 CcoN; FixN YP_001770110.1 CcoO; FixO YP_001770111.1 PFAM: Cbb3-type cytochrome oxidase component; KEGG: mmr:Mmar10_1151 Cbb3-type cytochrome oxidase component YP_001770112.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; KEGG: bbt:BBta_2794 cytochrome-c oxidase FixP chain YP_001770113.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: mex:Mext_2848 molybdenum cofactor synthesis domain protein YP_001770114.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: mex:Mext_2847 molybdopterin-guanine dinucleotide biosynthesis protein B YP_001770115.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: mex:Mext_2846 molybdenum cofactor synthesis domain protein YP_001770116.1 PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: mex:Mext_2845 molybdopterin binding domain YP_001770117.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: mex:Mext_3245 acyl-CoA dehydrogenase domain protein YP_001770118.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001770119.1 KEGG: mex:Mext_3243 hypothetical protein YP_001770120.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: mex:Mext_3241 3-hydroxyacyl-CoA dehydrogenase NAD-binding YP_001770121.1 PFAM: Endoribonuclease L-PSP; KEGG: rpd:RPD_0853 endoribonuclease L-PSP YP_001770122.1 PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_1951 major facilitator superfamily MFS_1 YP_001770124.1 PFAM: Catalase domain protein; KEGG: mex:Mext_3210 catalase YP_001770125.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mex:Mext_3211 LysR substrate-binding YP_001770126.1 TIGRFAM: membrane protein AbrB duplication; PFAM: putative ammonia monooxygenase; KEGG: mex:Mext_3212 membrane protein AbrB duplication YP_001770127.1 TIGRFAM: threonine dehydratase, biosynthetic; PFAM: Threonine dehydratase domain protein; Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: mex:Mext_3032 threonine dehydratase, biosynthetic YP_001770128.1 PFAM: prolipoprotein diacylglyceryl transferase; KEGG: mex:Mext_2885 prolipoprotein diacylglyceryl transferase YP_001770129.1 PFAM: protein of unknown function DUF185; KEGG: mex:Mext_2884 protein of unknown function DUF185 YP_001770130.1 PFAM: protein of unknown function DUF152; KEGG: mex:Mext_2883 protein of unknown function DUF152 YP_001770131.1 KEGG: mex:Mext_2882 porin YP_001770132.1 KEGG: dge:Dgeo_0823 SMC protein-like protein YP_001770133.1 PFAM: protein of unknown function DUF892; KEGG: nwi:Nwi_2664 protein of unknown function DUF892 YP_001770134.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mex:Mext_0060 glyoxalase/bleomycin resistance protein/dioxygenase YP_001770135.1 PFAM: Glucokinase; KEGG: mex:Mext_4399 glucokinase YP_001770136.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: dsy:DSY4723 hypothetical protein YP_001770137.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bja:blr1043 transcriptional regulatory protein YP_001770138.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB2682 probable LysR-family transcriptional regulator YP_001770139.1 PFAM: dihydrodipicolinate synthetase; KEGG: mes:Meso_3139 dihydrodipicolinate synthetase YP_001770140.1 KEGG: pol:Bpro_0028 NADPH-dependent FMN reductase YP_001770142.1 KEGG: mex:Mext_0047 hypothetical protein YP_001770143.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: swi:Swit_4518 glucose-methanol-choline oxidoreductase YP_001770144.1 PFAM: glycosyl transferase family 2; KEGG: ret:RHE_CH03198 probable glycosyltransferase protein YP_001770145.1 PFAM: polysaccharide deacetylase; KEGG: aeh:Mlg_0110 polysaccharide deacetylase YP_001770146.1 PFAM: glycosyl transferase family 2; KEGG: mma:MM_2103 putative methyltransferase YP_001770147.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mlr1948 ATP-binding protein of ABC transporter YP_001770148.1 KEGG: mex:Mext_3640 hypothetical protein YP_001770149.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: bvi:Bcep1808_3862 UDP-N-acetylglucosamine 2-epimerase YP_001770150.1 KEGG: xau:Xaut_1734 general secretory system II protein E domain protein YP_001770151.1 PFAM: chemotaxis sensory transducer; KEGG: bbt:BBta_3999 hypothetical protein YP_001770154.1 SMART: regulatory protein LuxR; KEGG: mes:Meso_3054 transcriptional regulator, LuxR family YP_001770155.1 KEGG: mex:Mext_2739 type I secretion system ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase YP_001770156.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: biotin/lipoyl attachment domain-containing protein; secretion protein HlyD family protein; KEGG: mex:Mext_2740 type I secretion membrane fusion protein, HlyD family YP_001770157.1 KEGG: aha:AHA_2697 structural toxin protein RtxA YP_001770158.1 KEGG: dar:Daro_1934 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001770160.1 PFAM: carbonic anhydrase; KEGG: mex:Mext_4100 carbonic anhydrase YP_001770161.1 SMART: HNH nuclease; KEGG: mlo:mll7975 hypothetical protein YP_001770165.1 PFAM: helix-turn-helix domain protein; KEGG: hne:HNE_1597 DNA-binding protein YP_001770166.1 KEGG: rpd:RPD_2727 curlin associated YP_001770167.1 TIGRFAM: outer membrane adhesin like proteiin; KEGG: aha:AHA_3491 flagellin hook IN motif family YP_001770169.1 PFAM: Flp/Fap pilin component; KEGG: dps:DP1538 similar to pilus assembly protein pilin subunit YP_001770170.1 KEGG: mlo:mll0948 hypothetical protein YP_001770172.1 PFAM: Integrase catalytic region; KEGG: mex:Mext_3531 integrase catalytic region YP_001770173.1 PFAM: transposase IS3/IS911 family protein; KEGG: mex:Mext_3530 transposase IS3/IS911 family protein YP_001770175.1 KEGG: mex:Mext_2455 hypothetical protein YP_001770176.1 KEGG: oan:Oant_1708 hypothetical protein YP_001770178.1 PFAM: ROSMUCR transcriptional regulator; KEGG: azc:AZC_1086 putative transcriptional regulator YP_001770179.1 PFAM: regulatory protein LuxR; KEGG: mlo:mll6762 two component system response regulator YP_001770180.1 PFAM: CDP-diacylglycerol pyrophosphatase; KEGG: bba:Bd0518 CDP-diacylglycerol pyrophosphatase YP_001770182.1 KEGG: mex:Mext_2525 hypothetical protein YP_001770184.1 PFAM: SH3 type 3 domain protein YP_001770187.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: eli:ELI_01055 ParA-like protein YP_001770190.1 PFAM: integrase family protein; KEGG: fra:Francci3_2304 phage integrase YP_001770191.1 KEGG: mex:Mext_2455 hypothetical protein YP_001770193.1 PFAM: histone family protein DNA-binding protein; KEGG: azc:AZC_3716 integration host factor beta subunit YP_001770195.1 PFAM: Integrase catalytic region; KEGG: bcn:Bcen_5102 integrase, catalytic region YP_001770196.1 PFAM: Ion transport 2 domain protein; KEGG: bja:blr3465 hypothetical protein YP_001770197.1 PFAM: Integrase catalytic region; KEGG: sen:SACE_5091 transposase YP_001770198.1 PFAM: glucose sorbosone dehydrogenase; KEGG: mex:Mext_1315 glucose sorbosone dehydrogenase YP_001770199.1 KEGG: mex:Mext_1107 hypothetical protein YP_001770200.1 PFAM: Integrase catalytic region; KEGG: nwi:Nwi_2917 integrase, catalytic region YP_001770201.1 PFAM: glycosyl transferase family 2; chitin synthase; KEGG: nis:NIS_0181 glucosaminyltransferase YP_001770202.1 KEGG: sme:SMb21465 protein secretion protein, HlyD family YP_001770203.1 TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: mex:Mext_4157 glucosamine--fructose-6-phosphate aminotransferase, isomerizing YP_001770206.1 KEGG: mex:Mext_2739 type I secretion system ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase YP_001770207.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: mex:Mext_2740 type I secretion membrane fusion protein, HlyD family YP_001770208.1 KEGG: pol:Bpro_1019 hypothetical protein YP_001770209.1 KEGG: rci:RCIX562 hypothetical protein YP_001770210.1 KEGG: pna:Pnap_2655 hypothetical protein YP_001770211.1 TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: TolB domain protein; WD40 domain protein beta Propeller; KEGG: mex:Mext_4760 Tol-Pal system beta propeller repeat protein TolB YP_001770212.1 TIGRFAM: protein TolA; PFAM: Tol-Pal system TolA; KEGG: mex:Mext_4761 protein TolA YP_001770213.1 TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mex:Mext_4762 biopolymer transport protein ExbD/TolR YP_001770214.1 TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: mex:Mext_4763 protein TolQ YP_001770215.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: mex:Mext_3201 phospholipid/glycerol acyltransferase YP_001770216.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: mex:Mext_3200 GCN5-related N-acetyltransferase YP_001770217.1 PFAM: peptidase M22 glycoprotease; KEGG: mex:Mext_3199 peptidase M22 glycoprotease YP_001770218.1 PFAM: nitrogen-fixing NifU domain protein; Scaffold protein Nfu/NifU; KEGG: mex:Mext_3198 scaffold protein Nfu/NifU YP_001770219.1 PFAM: UspA domain protein; KEGG: azc:AZC_4680 UspA protein YP_001770220.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_001770221.1 PFAM: GtrA family protein; KEGG: xau:Xaut_2749 GtrA family protein YP_001770222.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rba:RB10971 probable short-chain dehydrogenase YP_001770223.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: mex:Mext_1088 carbamoyl-phosphate synthase, large subunit YP_001770224.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_001770225.1 KEGG: mex:Mext_1090 hypothetical protein YP_001770226.1 PFAM: tRNA synthetase class II (G H P and S); KEGG: mex:Mext_4596 hypothetical protein YP_001770227.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: mex:Mext_4597 acyl-CoA dehydrogenase domain protein YP_001770228.1 KEGG: rpa:RPA4599 hypothetical protein YP_001770229.1 TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: rru:Rru_A1484 glycosyl transferase WecB/TagA/CpsF YP_001770230.1 KEGG: sfu:Sfum_3332 coenzyme F390 synthetase-like YP_001770231.1 PFAM: regulatory protein TetR; KEGG: reh:H16_B0715 transcriptional regulator, TetR/AcrR-family YP_001770232.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rpe:RPE_3619 acyl-CoA dehydrogenase domain protein YP_001770233.1 PFAM: pseudouridine synthase; KEGG: mex:Mext_2722 pseudouridine synthase YP_001770234.1 KEGG: mex:Mext_2723 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_001770235.1 TIGRFAM: intracellular septation protein A; PFAM: Intracellular septation protein A; KEGG: mex:Mext_2724 intracellular septation protein A YP_001770236.1 PFAM: helix-hairpin-helix motif; SMART: HhH-GPD family protein; KEGG: mex:Mext_2718 HhH-GPD family protein YP_001770237.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001770238.1 TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bpt:Bpet3236 2-haloalkanoic acid dehalogenase YP_001770239.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_001770240.1 PFAM: protein of unknown function DUF924; KEGG: xau:Xaut_1927 protein of unknown function DUF924 YP_001770241.1 PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mex:Mext_2821 helicase domain protein YP_001770242.1 KEGG: mex:Mext_4184 hypothetical protein YP_001770243.1 PFAM: glycoside hydrolase family 5; KEGG: rso:RSp0162 endoglucanase precursor (endo-1,4-beta-glucanase) protein YP_001770244.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: psb:Psyr_4298 protein of unknown function DUF6 YP_001770245.1 KEGG: mes:Meso_4140 putative transporter YP_001770247.1 PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_4199 major facilitator superfamily MFS_1 YP_001770248.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: mex:Mext_4648 L-carnitine dehydratase/bile acid-inducible protein F YP_001770249.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bbt:BBta_7506 putative methyl-accepting chemotaxis protein YP_001770250.1 PFAM: extracellular solute-binding protein family 1; KEGG: pna:Pnap_0227 extracellular solute-binding protein, family 1 YP_001770251.1 PFAM: PfkB domain protein; KEGG: xau:Xaut_2416 PfkB domain protein YP_001770252.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: ccr:CC_0537 PTS system, fructose-specific EIIA/HPr/EI components YP_001770253.1 TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease EIIA 1 domain; KEGG: ccr:CC_0537 PTS system, fructose-specific EIIA/HPr/EI components YP_001770254.1 KEGG: rso:RSp1284 putative sucrose-6-phosphate hydrolase (sucrase invertase) protein; TIGRFAM: sucrose-6-phosphate hydrolase; PFAM: Glycosyl hydrolase family 32 domain protein; SMART: glycoside hydrolase family 32 YP_001770255.1 TIGRFAM: PTS system, sucrose-specific IIBC subunit; PFAM: phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC; KEGG: rso:RSp1285 probable PTS system, sucrose-specific (IIBC component) transmembrane protein YP_001770256.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rso:RSp1286 putative DNA-binding sucrose operon transcriptional repressor transcription regulator protein YP_001770257.1 PFAM: porin LamB type; KEGG: aha:AHA_2981 sucrose porin YP_001770258.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mms:mma_2030 RNA polymerase sigma-70 factor, ECF subfamily YP_001770259.1 PFAM: FecR protein; KEGG: mms:mma_1160 Fe2+-dicitrate sensor, membrane component YP_001770260.1 PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: bxe:Bxe_C1048 ABC transporter, fused ATPase and inner membrane subunits YP_001770261.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bxe:Bxe_C1049 TonB-dependent siderophore receptor YP_001770262.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine YP_001770263.1 PFAM: NnrUfamily protein; KEGG: atc:AGR_L_945 hypothetical protein YP_001770264.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: sit:TM1040_3751 molybdopterin binding domain YP_001770265.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: mex:Mext_1042 antibiotic biosynthesis monooxygenase YP_001770266.1 TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpc:RPC_1973 TonB-dependent haem/haemoglobin receptor YP_001770267.1 KEGG: nha:Nham_2665 hypothetical protein YP_001770268.1 KEGG: bpt:Bpet0543 conserved hypothetical protein, putative esterase/lipase YP_001770269.1 KEGG: bxe:Bxe_C0154 ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein YP_001770270.1 PFAM: binding-protein-dependent transport systems inner membrane component; ABC transporter related; SMART: AAA ATPase; KEGG: mms:mma_2483 ABC-type sulfonate/nitrate transport system permease protein YP_001770271.1 KEGG: scl:sce8959 putative monooxygenase YP_001770272.1 KEGG: swi:Swit_3154 O-succinylhomoserine (thiol)-lyase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_001770273.1 KEGG: mex:Mext_3594 hypothetical protein YP_001770274.1 KEGG: mex:Mext_2630 hypothetical protein YP_001770275.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_4372 ABC transporter related YP_001770276.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_4371 binding-protein-dependent transport systems inner membrane component YP_001770277.1 KEGG: mex:Mext_4370 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein YP_001770278.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: bbt:BBta_1984 4-carboxymuconolactone decarboxylase YP_001770279.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rme:Rmet_4214 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_001770280.1 PFAM: conserved hypothetical protein; KEGG: pap:PSPA7_5649 hypothetical protein YP_001770281.1 PFAM: Endoribonuclease L-PSP; KEGG: rle:pRL110457 hypothetical protein YP_001770282.1 PFAM: proline racemase; KEGG: rle:pRL120535 putative proline racemase YP_001770283.1 PFAM: FAD dependent oxidoreductase; KEGG: mlo:mll6285 D-amino acid dehydrogenase, small subunit YP_001770284.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: csa:Csal_1756 iron-containing alcohol dehydrogenase YP_001770285.1 KEGG: mex:Mext_1782 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001770287.1 PFAM: class II aldolase/adducin family protein; KEGG: bra:BRADO4089 hypothetical protein YP_001770288.1 KEGG: rpa:pRPA1 replication protein YP_001770289.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: mex:Mext_2832 efflux transporter, RND family, MFP subunit YP_001770290.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: xau:Xaut_3406 heavy metal efflux pump, CzcA family YP_001770291.1 KEGG: xau:Xaut_3985 hypothetical protein YP_001770293.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: azc:AZC_0724 putative histidine kinase YP_001770294.1 PFAM: porin; KEGG: mex:Mext_3186 porin YP_001770295.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ccr:CC_2412 putative 3-hydroxyphenylpropionic transporter MhpT YP_001770296.1 PFAM: CoA-binding domain protein; KEGG: nar:Saro_0674 CoA-binding protein YP_001770297.1 catalyzes the conversion of feruloyl-CoA to vanillin and acetyl-CoA YP_001770298.1 PFAM: Aldehyde Dehydrogenase_; KEGG: ccr:CC_2402 vanillin dehydrogenase YP_001770299.1 PFAM: regulatory protein MarR; KEGG: nar:Saro_1381 transcriptional regulator, MarR family YP_001770300.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rsh:Rsph17029_3030 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein YP_001770301.1 KEGG: gdi:GDI1518 hypothetical protein YP_001770302.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rpc:RPC_4891 alpha amylase, catalytic region YP_001770303.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mex:Mext_4650 regulatory protein GntR HTH YP_001770304.1 PFAM: FAD linked oxidase domain protein; KEGG: mex:Mext_4204 D-lactate dehydrogenase (cytochrome) YP_001770305.1 PFAM: aminotransferase class V; KEGG: rme:Rmet_5630 aminotransferase, class V YP_001770306.1 PFAM: Collagen triple helix repeat; KEGG: acr:Acry_1166 collagen triple helix repeat YP_001770307.1 PFAM: Tail Collar domain protein; KEGG: mxa:MXAN_0326 phage tail collar domain protein YP_001770309.1 PFAM: Tail Collar domain protein; KEGG: mxa:MXAN_0326 phage tail collar domain protein YP_001770310.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mxa:MXAN_0328 acetyltransferase, GNAT family YP_001770311.1 PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: cps:CPS_4429 aspartyl/asparaginyl beta-hydroxylase family protein YP_001770312.1 KEGG: pen:PSEEN0742 hypothetical protein YP_001770313.1 KEGG: acr:Acry_0387 glycosyltransferase sugar-binding region containing DXD motif YP_001770314.1 PFAM: glycosyl transferase family 2; KEGG: acr:Acry_0383 glycosyl transferase, family 2 YP_001770315.1 PFAM: alpha/beta hydrolase fold; KEGG: mex:Mext_0061 alpha/beta hydrolase fold YP_001770316.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bra:BRADO3099 putative amidohydrolase family protein YP_001770317.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: hha:Hhal_1255 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001770318.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bra:BRADO3098 ABC transporter ATP-binding protein (TauB-like) YP_001770319.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bra:BRADO3097 putative ABC transporter permease YP_001770320.1 KEGG: bra:BRADO3096 putative ABC transporter periplasmic substrate-binding protein YP_001770321.1 PFAM: aldo/keto reductase; KEGG: bxe:Bxe_A0784 putative aldo/keto reductase family oxidoreductase YP_001770322.1 PFAM: protein of unknown function DUF156; KEGG: xau:Xaut_3401 protein of unknown function DUF156 YP_001770323.1 PFAM: high-affinity nickel-transporter; KEGG: xau:Xaut_3402 high-affinity nickel-transporter YP_001770325.1 KEGG: mex:Mext_1134 hypothetical protein YP_001770326.1 PFAM: glycosyl transferase family 2; KEGG: mex:Mext_1133 cellulose synthase (UDP-forming) YP_001770327.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mnin Bacillus subtilis the protein in this cluster is considered non-essential YP_001770328.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bte:BTH_I2606 oxidoreductase, short chain dehydrogenase/reductase family superfamily YP_001770329.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mfa:Mfla_1148 short-chain dehydrogenase/reductase SDR YP_001770330.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mfa:Mfla_1149 transcriptional regulator, LysR family YP_001770331.1 PFAM: protein of unknown function UPF0126; KEGG: sal:Sala_2223 protein of unknown function UPF0126 YP_001770332.1 PFAM: cytochrome P450; KEGG: xcv:XCV2150 cytochrome P-450 YP_001770334.1 PFAM: dihydrodipicolinate synthetase; KEGG: mlo:mll3981 dihydrodipicolinate synthase YP_001770335.1 PFAM: inner-membrane translocator; KEGG: azo:azo0121 putative branched-chain amino acid transport permease YP_001770336.1 PFAM: inner-membrane translocator; KEGG: eba:ebA3426 probable transmembrane ABC transporter protein YP_001770337.1 PFAM: Extracellular ligand-binding receptor; KEGG: reu:Reut_B3887 possible UreA/short-chain amide ABC transporter YP_001770338.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eba:ebA3429 ABC transporter subunit YP_001770339.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bte:BTH_I3331 branched-chain amino acid ABC transporter, ATP-binding protein YP_001770340.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rme:Rmet_5099 transcriptional regulator, GntR family YP_001770341.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate YP_001770342.1 KEGG: xau:Xaut_2416 PfkB domain protein YP_001770343.1 TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: mex:Mext_0855 glycine cleavage system T protein YP_001770344.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_001770345.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_001770346.1 KEGG: azc:AZC_1049 Nif-specific regulatory protein; TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001770347.1 TIGRFAM: alkylhydroperoxidase, AhpD family; alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: azc:AZC_1050 alkylhydroperoxidase YP_001770348.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bmt:BSUIS_B0694 hypothetical protein YP_001770349.1 KEGG: azc:AZC_1052 hypothetical protein YP_001770350.1 TIGRFAM: modD protein; PFAM: Quinolinate phosphoribosyl transferase; KEGG: azc:AZC_1053 putative molybdenum utilization protein YP_001770351.1 nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; in R. etli there are three essentially identical copies of nifH which are actively expressed during symbiosis YP_001770352.1 KEGG: mlo:mlr5906 nitrogenase molybdenum-iron protein alpha chain, NifD; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1 YP_001770353.1 KEGG: mlo:mlr5907 nitrogenase molybdenum-iron protein beta chain, NifK; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1 YP_001770354.1 KEGG: mlo:mlr5908 nitrogenase molybdenum-cofactor synthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1 YP_001770355.1 functions with NifE to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe YP_001770356.1 TIGRFAM: nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: mlo:mlr5911 nitrogenase molybdenum-iron protein NifX YP_001770357.1 TIGRFAM: nitrogen fixation protein; PFAM: protein of unknown function DUF269; KEGG: mlo:mlr5912 hypothetical protein YP_001770358.1 PFAM: protein of unknown function DUF683; KEGG: azc:AZC_3451 hypothetical 7.7 kDa protein in FixX 3'region YP_001770359.1 TIGRFAM: ferredoxin III, nif-specific; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ret:RHE_PD00302 electron transfer ferredoxin B protein YP_001770360.1 PFAM: NifQ family protein; KEGG: rpd:RPD_1082 NifQ YP_001770361.1 KEGG: azc:AZC_2247 bacterioferritin-associated ferredoxin YP_001770362.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: rpa:RPA4633 short-chain dehydrogenase YP_001770363.1 PFAM: sodium:dicarboxylate symporter; KEGG: rme:Rmet_4299 sodium:dicarboxylate symporter YP_001770364.1 NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate YP_001770365.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: bja:bll0130 hypothetical protein YP_001770366.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: aau:AAur_pTC20109 proline-betaine transporter YP_001770367.1 PFAM: pentapeptide repeat protein; KEGG: mex:Mext_4216 pentapeptide repeat protein YP_001770368.1 PFAM: protein of unknown function UPF0118; KEGG: mex:Mext_4214 protein of unknown function UPF0118 YP_001770369.1 PFAM: response regulator receiver; KEGG: mex:Mext_4215 response regulator receiver YP_001770370.1 KEGG: mex:Mext_3138 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_001770371.1 KEGG: mex:Mext_3808 hypothetical protein YP_001770372.1 KEGG: mex:Mext_3807 hypothetical protein YP_001770373.1 KEGG: mex:Mext_4217 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE3 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001770374.1 PFAM: Dak kinase; Dak phosphatase; KEGG: mex:Mext_1031 glycerone kinase YP_001770375.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bam:Bamb_4327 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_001770376.1 TIGRFAM: plasmid partitioning protein RepA; PFAM: regulatory protein MerR; Cobyrinic acid ac-diamide synthase; KEGG: nha:Nham_4281 cobyrinic acid a,c-diamide synthase YP_001770377.1 TIGRFAM: parB-like partition protein; plasmid partitioning protein RepB; PFAM: ParB domain protein nuclease; RepB plasmid partition; KEGG: nha:Nham_4280 RepB plasmid partition YP_001770378.1 KEGG: sme:SMb21562 hypothetical membrane-anchored protein YP_001770379.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sme:SMb21561 putative two component response regulator protein YP_001770380.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sme:SMb21560 putative two component sensor histidine kinase protein YP_001770381.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sme:SMb20214 putative oxidoreductase protein YP_001770382.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: rle:RL4053 putative AraC family transcriptional regulator YP_001770383.1 PFAM: peptidase M19 renal dipeptidase; KEGG: sth:STH1775 putative dipeptidase YP_001770385.1 PFAM: CBS domain containing protein; transport-associated; SMART: Transport-associated and nodulation region; KEGG: rpc:RPC_4051 putative signal-transduction protein with CBS domains YP_001770386.1 PFAM: UspA domain protein; KEGG: xau:Xaut_3179 UspA domain protein YP_001770387.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: bja:bll2518 putative phosphoketolase YP_001770388.1 PFAM: TOBE domain protein; KEGG: mex:Mext_2622 TOBE domain protein YP_001770389.1 KEGG: rle:pRL100197 ferredoxin-like protein YP_001770390.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; KEGG: bbt:BBta_5870 FixC protein YP_001770391.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: bra:BRADO5385 protein FixB; electron transfer flavoprotein alpha chain YP_001770392.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: azc:AZC_3447 FixA protein YP_001770393.1 PFAM: nitrogen fixation protein NifW; KEGG: mlo:mll5864 nitrogenase stabilizing/protective protein YP_001770394.1 TIGRFAM: serine O-acetyltransferase; KEGG: azc:AZC_3388 serine O-acetyltransferase YP_001770395.1 TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; KEGG: xau:Xaut_0150 homocitrate synthase YP_001770396.1 TIGRFAM: cysteine desulfurase NifS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gdi:GDI0448 cysteine desulfurase (nitrogenase metalloclusters biosynthesis protein NifS) YP_001770397.1 TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: gdi:GDI0447 nitrogen fixation protein NifU YP_001770398.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: mlo:mll5942 hypothetical protein YP_001770399.1 TIGRFAM: bacteriochlorophyll 4-vinyl reductase; PFAM: 4-vinyl reductase 4VR; KEGG: rru:Rru_A0613 bacteriochlorophyll 4-vinyl reductase YP_001770400.1 KEGG: bra:BRADO1652 Mg-protoporphyrin IX monomethyl ester oxidative cyclase 66kD subunit; TIGRFAM: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001770401.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: bja:bll2223 probable transcriptional regulator YP_001770402.1 PFAM: extracellular solute-binding protein family 3; KEGG: bja:blr2224 ABC transporter amino acid-binding protein YP_001770403.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr2225 amino acid ABC transporter permease protein YP_001770404.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr2226 amino acid ABC transporter ATP-binding protein YP_001770405.1 PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: vei:Veis_0184 FAD dependent oxidoreductase YP_001770406.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: rha:RHA1_ro00656 probable dehydrogenase YP_001770407.1 PFAM: Hydratase/decarboxylase; KEGG: ppf:Pput_2159 hydratase/decarboxylase YP_001770408.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: nha:Nham_1949 heavy metal translocating P-type ATPase YP_001770409.1 PFAM: protein of unknown function DUF1476; KEGG: bbt:BBta_5410 hypothetical protein YP_001770410.1 KEGG: azc:AZC_3568 hypothetical protein YP_001770411.1 PFAM: CBS domain containing protein; transport-associated; KEGG: bxe:Bxe_A1873 hypothetical protein YP_001770412.1 KEGG: mlo:mll5853 hypothetical protein YP_001770413.1 TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU family protein; KEGG: bra:BRADO5422 FixU nitrogen fixation protein YP_001770414.1 PFAM: NifZ family protein; KEGG: ret:RHE_PD00231 nitrogen fixation protein YP_001770415.1 PFAM: leucine rich repeat variant; LRV FeS4 cluster domain protein; KEGG: xau:Xaut_0138 LRV Fes4 cluster domain protein YP_001770416.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bbt:BBta_5932 ferredoxin YP_001770417.1 TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein; KEGG: mlo:mll5855 nitrogen fixation protein NifB YP_001770418.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: rpb:RPB_2084 amidohydrolase YP_001770419.1 KEGG: rpb:RPB_2080 hypothetical protein YP_001770420.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azc:AZC_3896 ABC transporter ATPase protein YP_001770421.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_3895 putative ABC transporter permease protein YP_001770422.1 PFAM: NMT1/THI5 like domain protein; KEGG: azc:AZC_3894 putative ABC transporter periplasmic substrate binding protein YP_001770423.1 PFAM: amidohydrolase; KEGG: azc:AZC_3893 putative cytosine deaminase YP_001770424.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rpb:RPB_2079 transcriptional regulator, GntR family YP_001770425.1 KEGG: afw:Anae109_4212 LigA YP_001770426.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: mex:Mext_4181 protein of unknown function DUF6 transmembrane YP_001770427.1 catalyzes the release of the N-terminal amino acid from a tripeptide YP_001770428.1 KEGG: mex:Mext_0521 adenylyl cyclase class-3/4/guanylyl cyclase YP_001770429.1 PFAM: monooxygenase FAD-binding; KEGG: mex:Mext_0568 monooxygenase FAD-binding YP_001770430.1 PFAM: Aldehyde Dehydrogenase_; KEGG: mex:Mext_3423 aldehyde dehydrogenase YP_001770432.1 PFAM: domain of unknown function DUF1745; KEGG: mex:Mext_1925 domain of unknown function DUF1745 YP_001770433.1 PFAM: ApbE family lipoprotein; KEGG: mex:Mext_1333 ApbE family lipoprotein YP_001770434.1 PFAM: FMN-binding domain protein; KEGG: mex:Mext_1334 FMN-binding domain protein YP_001770435.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: mex:Mext_1335 40-residue YVTN family beta-propeller repeat protein YP_001770436.1 KEGG: mex:Mext_1336 hypothetical protein YP_001770437.1 KEGG: mex:Mext_1337 cytochrome c550 YP_001770438.1 SMART: extracellular solute-binding protein family 3; KEGG: mex:Mext_1338 extracellular solute-binding protein family 3 YP_001770439.1 TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: mex:Mext_1339 PQQ-dependent dehydrogenase, methanol/ethanol family YP_001770441.1 KEGG: mex:Mext_4542 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001770443.1 KEGG: mex:Mext_3816 hypothetical protein YP_001770444.1 KEGG: mex:Mext_3817 hypothetical protein YP_001770446.1 SMART: extracellular solute-binding protein family 3; KEGG: bja:blr8117 ABC transporter substrate-binding protein YP_001770447.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr8118 ABC transporter permease protein YP_001770448.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr8119 ABC transporter ATP-binding protein YP_001770449.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:blr8120 putative dehdyrogenase YP_001770450.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bja:blr8121 putative cycloisomerase YP_001770451.1 PFAM: FAD dependent oxidoreductase; KEGG: azc:AZC_0820 FAD dependent oxidoreductase YP_001770452.1 PFAM: monooxygenase FAD-binding; KEGG: bja:bll6080 hypothetical protein YP_001770453.1 PFAM: Cupin domain protein; protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein; KEGG: bja:blr6079 hypothetical protein YP_001770454.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oan:Oant_4002 ABC transporter related YP_001770455.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oan:Oant_4001 ABC transporter related YP_001770456.1 PFAM: inner-membrane translocator; KEGG: oan:Oant_4000 inner-membrane translocator YP_001770457.1 PFAM: inner-membrane translocator; KEGG: oan:Oant_3999 inner-membrane translocator YP_001770458.1 PFAM: Extracellular ligand-binding receptor; KEGG: oan:Oant_3998 extracellular ligand-binding receptor YP_001770459.1 PFAM: Methyltransferase type 11; KEGG: oan:Oant_2454 methyltransferase type 11 YP_001770460.1 KEGG: noc:Noc_2145 L-sorbosone dehydrogenase YP_001770461.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: csa:Csal_0815 alcohol dehydrogenase, zinc-binding YP_001770462.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_001770463.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: nwi:Nwi_0688 3-demethylubiquinone-9 3-methyltransferase YP_001770464.1 KEGG: mex:Mext_2879 hypothetical protein YP_001770465.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mex:Mext_2880 ErfK/YbiS/YcfS/YnhG family protein YP_001770466.1 KEGG: mex:Mext_2881 putative periplasmic ligand-binding sensor protein YP_001770467.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA YP_001770468.1 PFAM: Phosphoglycerate mutase; KEGG: rpc:RPC_3479 phosphoglycerate mutase YP_001770469.1 PFAM: thioesterase superfamily protein; KEGG: reu:Reut_A1410 phenylacetic acid degradation-related protein YP_001770470.1 KEGG: mex:Mext_2721 MiaB-like tRNA modifying enzyme; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_001770471.1 PFAM: diaminopimelate epimerase; KEGG: mex:Mext_2720 diaminopimelate epimerase YP_001770472.1 PFAM: transcription activator effector binding; KEGG: mex:Mext_2719 transcription activator effector binding YP_001770473.1 TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: mex:Mext_2614 periplasmic protein thiol--disulphide oxidoreductase DsbE YP_001770474.1 TIGRFAM: heme exporter protein CcmD; PFAM: Heme exporter protein D (CcmD); KEGG: mex:Mext_2613 heme exporter protein CcmD YP_001770475.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: mex:Mext_2612 heme exporter protein CcmC YP_001770476.1 PFAM: protein of unknown function DUF1328; KEGG: mex:Mext_3158 protein of unknown function DUF1328 YP_001770477.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: mex:Mext_2634 heme exporter protein CcmB YP_001770478.1 KEGG: mex:Mext_2635 heme exporter protein CcmA; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase YP_001770479.1 TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: mex:Mext_2637 aconitate hydratase 1 YP_001770480.1 KEGG: mex:Mext_3595 hypothetical protein YP_001770481.1 KEGG: mex:Mext_4396 hypothetical protein YP_001770482.1 required for 70S ribosome assembly YP_001770483.1 PFAM: domain of unknown function DUF1745; KEGG: mex:Mext_1925 domain of unknown function DUF1745 YP_001770484.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: xau:Xaut_1433 uncharacterized peroxidase-related enzyme YP_001770485.1 PFAM: NAD-glutamate dehydrogenase; KEGG: bja:blr7995 hypothetical protein YP_001770486.1 KEGG: mex:Mext_2003 cob(II)yrinic acid a,c-diamide reductase; TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase YP_001770487.1 KEGG: mex:Mext_2004 hypothetical protein YP_001770488.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium have one thick flagellum and several thin flagella; the proteins in this cluster are associated with the thin flagella YP_001770489.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella YP_001770490.1 PFAM: flagellar hook-basal body complex protein FliE; KEGG: mex:Mext_0620 flagellar hook-basal body complex protein FliE YP_001770491.1 makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella YP_001770492.1 TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: mex:Mext_0622 FlgA, flagellar basal-body P-ring formation protein YP_001770493.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thin flagella YP_001770494.1 KEGG: mex:Mext_0624 conserved hypothetical proteinn YP_001770495.1 PFAM: flagellar L-ring protein; KEGG: mex:Mext_0625 flagellar L-ring protein YP_001770496.1 Essential for efficient processing of 16S rRNA YP_001770497.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_001770498.1 KEGG: mex:Mext_0651 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_001770499.1 KEGG: mex:Mext_0650 hypothetical protein YP_001770500.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: mex:Mext_4178 alpha/beta hydrolase fold-3 domain protein YP_001770501.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mex:Mext_4179 short-chain dehydrogenase/reductase SDR YP_001770502.1 TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; KEGG: mes:Meso_0321 cell division topological specificity factor MinE YP_001770503.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: mex:Mext_1268 septum site-determining protein MinD YP_001770504.1 blocks the formation of polar Z-ring septums YP_001770505.1 PFAM: type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: fal:FRAAL2151 conserved hypothetical protein; putative ATP binding domain YP_001770506.1 TIGRFAM: allophanate hydrolase; PFAM: Amidase; KEGG: rle:pRL90294 putative UreA amidolyase YP_001770507.1 PFAM: hydroxyneurosporene synthase; KEGG: mex:Mext_2725 hydroxyneurosporene synthase YP_001770508.1 TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mex:Mext_2726 phytoene desaturase YP_001770509.1 PFAM: Polyprenyl synthetase; KEGG: mex:Mext_2727 polyprenyl synthetase YP_001770510.1 PFAM: O-methyltransferase family 2; Methyltransferase type 12; KEGG: mex:Mext_2728 O-methyltransferase family 2 YP_001770511.1 TIGRFAM: chlorophyll synthesis pathway, BchC; PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: mex:Mext_2729 chlorophyll synthesis pathway, BchC YP_001770512.1 KEGG: mex:Mext_2730 chlorophyllide reductase iron protein subunit X; TIGRFAM: chlorophyllide reductase iron protein subunit X; PFAM: NifH/frxC-family protein YP_001770513.1 TIGRFAM: chlorophyllide reductase subunit Y; PFAM: oxidoreductase/nitrogenase component 1; KEGG: mex:Mext_2731 chlorophyllide reductase subunit Y YP_001770514.1 TIGRFAM: chlorophyllide reductase subunit Z; PFAM: oxidoreductase/nitrogenase component 1; protein of unknown function DUF1197; KEGG: mex:Mext_2732 chlorophyllide reductase subunit Z YP_001770515.1 KEGG: mex:Mext_2733 hypothetical protein YP_001770516.1 PFAM: antenna complex alpha/beta subunit; KEGG: mex:Mext_2734 antenna complex alpha/beta subunit YP_001770517.1 PFAM: antenna complex alpha/beta subunit; KEGG: mex:Mext_2735 antenna complex alpha/beta subunit YP_001770518.1 TIGRFAM: photosynthetic reaction center L subunit; PFAM: photosynthetic reaction centre protein; KEGG: mex:Mext_2736 photosynthetic reaction center L subunit YP_001770519.1 TIGRFAM: photosynthetic reaction center, M subunit; PFAM: photosynthetic reaction centre protein; KEGG: mex:Mext_2737 photosynthetic reaction center, M subunit YP_001770520.1 PFAM: photosynthetic reaction centre cytochrome c subunit; KEGG: mex:Mext_2738 photosynthetic reaction centre cytochrome c subunit YP_001770521.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Nitrate and nitrite sensing domain protein; KEGG: mex:Mext_3893 nitrate and nitrite sensing domain protein YP_001770522.1 KEGG: mex:Mext_4521 hypothetical protein YP_001770523.1 PFAM: acriflavin resistance protein; KEGG: mex:Mext_4520 acriflavin resistance protein YP_001770524.1 KEGG: mex:Mext_4824 hypothetical protein YP_001770525.1 PFAM: TspO/MBR family protein; KEGG: mex:Mext_4823 TspO/MBR family protein YP_001770526.1 TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: mex:Mext_4822 geranylgeranyl reductase YP_001770527.1 PFAM: PUCC protein; major facilitator superfamily MFS_1; KEGG: mex:Mext_4821 PucC protein YP_001770528.1 TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase; KEGG: mex:Mext_4820 bacteriochlorophyll/chlorophyll synthetase YP_001770529.1 KEGG: mex:Mext_4819 transcriptional regulator PpsR; TIGRFAM: transcriptional regulator PpsR; PFAM: helix-turn-helix Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001770530.1 PFAM: cobalamin B12-binding domain protein; KEGG: mex:Mext_4818 cobalamin B12-binding YP_001770531.1 PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: mex:Mext_4817 2-vinyl bacteriochlorophyllide hydratase YP_001770532.1 light-independent reduction of protochlorophyllide to form chlorophyllide a YP_001770533.1 light-independent reduction of protochlorophyllide to form chlorophyllide a YP_001770534.1 involved in chelation of magnesium into protoporphyrin IX; involved in bacteriochlorophyll biosynthesis; the enzyme from Rhodobacter capsulatus contains an Fe-S cluster; part of a complex with BchI, BchD, and BchH YP_001770535.1 light-independent; with chlN(bchN) and chlB(bchB) reduces ring D of protochlorophyllide to form chlorophyllide a in chlorophyll/bacteriochlorophyll production YP_001770536.1 catalyzes the formation of Mg-protoporphyrin IX methyl ester and S-adenosyl-L-homocysteine from Mg-protoporphyrin IX and S-adenosyl-L-methionine YP_001770537.1 PFAM: PUCC protein; major facilitator superfamily MFS_1; KEGG: mex:Mext_4811 PucC protein YP_001770538.1 TIGRFAM: photosynthetic reaction center H subunit; PFAM: PRC-barrel domain protein; Photosynthetic reaction centre H subunit; KEGG: mex:Mext_4810 photosynthetic reaction center H subunit YP_001770539.1 KEGG: mex:Mext_4809 putative photosynthetic complex assembly protein YP_001770540.1 KEGG: mex:Mext_4808 hypothetical protein YP_001770541.1 KEGG: mex:Mext_4807 hypothetical protein YP_001770542.1 oxidative; catalyzes the formation of divinylprotochlorophyllide from magnesium-protoporphyrin IX 13-monomethyl ester in isocyclic ring formation in chlorophyll biosynthesis YP_001770543.1 KEGG: mex:Mext_4805 hypothetical protein YP_001770544.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine YP_001770545.1 KEGG: mex:Mext_2505 magnesium chelatase ATPase subunit I; TIGRFAM: magnesium chelatase ATPase subunit I; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase YP_001770546.1 involved in chelation of magnesium into protoporphyrin IX; involved in bacteriochlorophyll biosynthesis; part of a complex with BchI, BchD, and BchH YP_001770547.1 TIGRFAM: magnesium chelatase accessory protein; PFAM: alpha/beta hydrolase fold; KEGG: mex:Mext_3010 magnesium chelatase accessory protein YP_001770548.1 TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mex:Mext_3011 phytoene desaturase YP_001770549.1 PFAM: Squalene/phytoene synthase; KEGG: mex:Mext_3012 squalene/phytoene synthase YP_001770551.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine YP_001770552.1 TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: mex:Mext_4501 transketolase YP_001770553.1 PFAM: glycoside hydrolase 15-related; KEGG: mex:Mext_4500 glycoside hydrolase 15-related YP_001770554.1 KEGG: lma:LmjF35.0290 hypothetical protein, conserved YP_001770555.1 PFAM: response regulator receiver; ANTAR domain protein; KEGG: mex:Mext_4498 ANTAR domain protein YP_001770556.1 KEGG: mex:Mext_4497 putative nitrate transport protein YP_001770557.1 KEGG: mex:Mext_4496 twin-arginine translocation pathway signal YP_001770558.1 TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_4495 nitrate ABC transporter, inner membrane subunit YP_001770559.1 KEGG: mex:Mext_4494 nitrate ABC transporter, ATPase subunits C and D; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase YP_001770560.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: mex:Mext_4493 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001770561.1 ferredoxin-dependent assimilatory nitrite reductase YP_001770562.1 Catalyzes the reduction of sulfite to sulfide, an essential step in the anaerobic sulfate-respiration pathway YP_001770563.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: mex:Mext_3222 nitrate reductase YP_001770564.1 TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mex:Mext_3223 uroporphyrin-III C-methyltransferase YP_001770566.1 KEGG: mex:Mext_3588 hypothetical protein YP_001770567.1 PFAM: regulatory protein TetR; KEGG: bpt:Bpet1332 transcriptional regulator, TetR-family YP_001770568.1 PFAM: major facilitator superfamily MFS_1; KEGG: bpt:Bpet1333 permease of the major facilitator family YP_001770569.1 PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: xft:PD0499 colicin V secretion ABC transporter ATP-binding protein YP_001770570.1 KEGG: ccr:CC_0683 HlyD family secretion protein YP_001770574.1 KEGG: sit:TM1040_1220 phosphopantetheine-binding YP_001770575.1 PFAM: MaoC domain protein dehydratase; KEGG: oan:Oant_1389 MaoC domain protein dehydratase YP_001770576.1 PFAM: outer membrane efflux protein; KEGG: bra:BRADO2662 putative outer TolC membrane protein YP_001770577.1 KEGG: mlo:mlr0488 hypothetical protein YP_001770580.1 PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: azc:AZC_3025 D-3-phosphoglycerate dehydrogenase YP_001770581.1 PFAM: electron transport protein SCO1/SenC; KEGG: mex:Mext_3224 electron transport protein SCO1/SenC YP_001770582.1 KEGG: mex:Mext_3225 glycosyl transferase family 2 YP_001770583.1 PFAM: extracellular solute-binding protein family 3; KEGG: mex:Mext_3226 extracellular solute-binding protein family 3 YP_001770584.1 PFAM: Glutathione S-transferase domain; KEGG: mex:Mext_4867 glutathione S-transferase domain YP_001770586.1 PFAM: aminotransferase class V; KEGG: rru:Rru_A3040 aminotransferase, class V YP_001770587.1 KEGG: mex:Mext_3617 hypothetical protein YP_001770588.1 PFAM: protein of unknown function DUF937; KEGG: mex:Mext_1884 protein of unknown function DUF937 YP_001770589.1 KEGG: mex:Mext_1204 hypothetical protein YP_001770590.1 PFAM: OsmC family protein; KEGG: mex:Mext_1205 OsmC family protein YP_001770591.1 PFAM: ribonuclease BN; KEGG: mex:Mext_1115 ribonuclease BN YP_001770592.1 KEGG: mex:Mext_0064 hypothetical protein YP_001770593.1 KEGG: mex:Mext_0063 hypothetical protein YP_001770597.1 PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: pla:Plav_0008 penicillin-binding protein, 1A family YP_001770598.1 KEGG: mex:Mext_3720 hypothetical protein YP_001770599.1 KEGG: mex:Mext_4768 Holliday junction DNA helicase RuvB; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001770600.1 KEGG: noc:Noc_0462 protein of unknown function DUF202 YP_001770601.1 KEGG: csa:Csal_2956 hypothetical protein YP_001770602.1 KEGG: mex:Mext_0194 hypothetical protein YP_001770603.1 KEGG: har:HEAR0069 putative permease YP_001770604.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mex:Mext_1093 LysR substrate-binding YP_001770605.1 KEGG: mex:Mext_1092 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001770606.1 PFAM: protein of unknown function DUF1022; KEGG: mex:Mext_1091 protein of unknown function DUF1022 YP_001770607.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: azc:AZC_1147 transcriptional regulatory protein YP_001770608.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: bbt:BBta_6290 hypothetical protein YP_001770609.1 KEGG: pla:Plav_3056 hypothetical protein YP_001770610.1 PFAM: peptidase M23B; KEGG: mex:Mext_1023 peptidase M23B YP_001770611.1 PFAM: protein of unknown function DUF111; KEGG: rxy:Rxyl_0176 protein of unknown function DUF111 YP_001770612.1 KEGG: gvi:gll2047 hypothetical protein YP_001770613.1 KEGG: syg:sync_0783 putative circadian phase modifier CpmA homolog YP_001770614.1 PFAM: aldo/keto reductase; KEGG: sus:Acid_3862 aldo/keto reductase YP_001770615.1 PFAM: HupE/UreJ protein; KEGG: azc:AZC_0613 hydrogenase/urease accessory protein YP_001770616.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mex:Mext_1032 methyltransferase type 11 YP_001770618.1 PFAM: Integrase catalytic region; KEGG: sen:SACE_5091 transposase YP_001770621.1 PFAM: ABC-2 type transporter; KEGG: mex:Mext_2467 ABC-2 type transporter YP_001770622.1 PFAM: carboxyl transferase; KEGG: mex:Mext_0282 carboxyl transferase YP_001770623.1 PFAM: metallophosphoesterase; KEGG: mex:Mext_2910 metallophosphoesterase YP_001770625.1 PFAM: aminotransferase class-III; KEGG: mex:Mext_2908 aminotransferase class-III YP_001770626.1 KEGG: mex:Mext_2907 protein of unknown function UPF0153 YP_001770627.1 KEGG: bbt:BBta_1315 cyanuric acid amidohydrolase; TIGRFAM: ring-opening amidohydrolase; PFAM: Amidohydrolase ring-opening AtzD/TrzD YP_001770628.1 KEGG: mex:Mext_4460 hypothetical protein YP_001770629.1 PFAM: glycosyl transferase group 1; KEGG: pol:Bpro_4925 glycosyl transferase, group 1 YP_001770630.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: smd:Smed_0883 type I secretion membrane fusion protein, HlyD family YP_001770631.1 KEGG: smd:Smed_0884 type I secretion system ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase YP_001770632.1 PFAM: aminotransferase class I and II; KEGG: mex:Mext_2070 aminotransferase class I and II YP_001770633.1 KEGG: eli:ELI_07140 hypothetical protein YP_001770635.1 PFAM: acriflavin resistance protein; KEGG: mex:Mext_3922 acriflavin resistance protein YP_001770636.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mex:Mext_3921 efflux transporter, RND family, MFP subunit YP_001770637.1 KEGG: smd:Smed_6196 NodH sulfotransferase YP_001770638.1 TIGRFAM: ABC-2 type transporter, NodJ family; PFAM: ABC-2 type transporter; KEGG: ret:RHE_PD00277 nod factor ABC transporter, permease protein YP_001770639.1 KEGG: smd:Smed_6187 nodulation ABC transporter NodI; TIGRFAM: nodulation ABC transporter NodI; PFAM: ABC transporter related; SMART: AAA ATPase YP_001770640.1 PFAM: glycosyl transferase family 2; chitin synthase; KEGG: bja:blr2027 chitin synthase YP_001770641.1 PFAM: polysaccharide deacetylase; KEGG: sme:SMa0868 NodB chitooligosaccharide deacetylase YP_001770642.1 catalyzes the transfer of a fatty acyl group onto Nod factor, beta-(1,4)-N-acetylglucosamine oligosaccharide YP_001770643.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:bll2023 transcriptional regulatory protein YP_001770644.1 KEGG: ana:alr7249 unknown protein YP_001770645.1 PFAM: proline racemase; KEGG: sen:SACE_3252 proline racemase YP_001770646.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: azc:AZC_2999 amidohydrolase YP_001770647.1 PFAM: Extracellular ligand-binding receptor; KEGG: azc:AZC_3000 ABC transport solute-binding protein YP_001770648.1 PFAM: inner-membrane translocator; KEGG: azc:AZC_3001 ABC transport permease protein YP_001770649.1 PFAM: inner-membrane translocator; KEGG: azc:AZC_3002 ABC transport permease protein YP_001770650.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azc:AZC_3003 ABC transport ATP-binding protein YP_001770651.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azc:AZC_3005 ABC transport ATP-binding protein YP_001770653.1 PFAM: dihydrodipicolinate synthetase; KEGG: chy:CHY_1156 dihydrodipicolinate synthase YP_001770654.1 PFAM: Aldehyde Dehydrogenase_; KEGG: bpt:Bpet2435 putative NAD-dependent aldehyde dehydrogenase YP_001770655.1 PFAM: FAD dependent oxidoreductase; KEGG: rso:RSc0507 probable amino acid dehydrogenase transmembrane protein YP_001770656.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: ppr:PBPRA0298 hypothetical transcriptional regulator YP_001770657.1 PFAM: NAD-glutamate dehydrogenase; KEGG: bja:blr7995 hypothetical protein YP_001770658.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: mes:Meso_4315 transposase IS116/IS110/IS902 YP_001770659.1 PFAM: amidohydrolase 2; KEGG: bxe:Bxe_B2538 putative amidohydrolase YP_001770660.1 KEGG: bxe:Bxe_B2540 ABC spermidine/putrescine transporter, ATPase subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase YP_001770661.1 PFAM: FAD dependent oxidoreductase; KEGG: bxe:Bxe_B2541 putative phytoene dehydrogenase YP_001770662.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rsq:Rsph17025_2837 AMP-dependent synthetase and ligase YP_001770663.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B2542 ABC spermidine/putrescine transporter, inner membrane subunit YP_001770664.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B2543 ABC spermidine/putrescine transporter, inner membrane subunit YP_001770665.1 PFAM: extracellular solute-binding protein family 1; KEGG: bxe:Bxe_B2544 ABC spermidine/putrescine transporter, periplasmic ligand binding protein YP_001770666.1 PFAM: Aldehyde Dehydrogenase_; KEGG: rsh:Rsph17029_3176 betaine-aldehyde dehydrogenase YP_001770667.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_B2546 transcriptional regulator, LysR family YP_001770668.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pau:PA14_65940 putative NADH:flavin oxidoreductase YP_001770669.1 PFAM: extracellular solute-binding protein family 1; KEGG: bja:bll6825 ABC transporter substrate-binding protein YP_001770670.1 KEGG: bbt:BBta_2418 putative sperimidine/putrescine transport protein (ABC superfamily, atp_bind); TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase YP_001770671.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr6647 ABC transporter permease protein YP_001770672.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll6253 ABC transporter permease protein YP_001770673.1 PFAM: FAD dependent oxidoreductase; glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: pde:Pden_4916 FAD dependent oxidoreductase YP_001770674.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: ppu:PP_2868 transcriptional regulator, Cro/CI family YP_001770675.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate YP_001770676.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: ret:RHE_PF00433 putative transcriptional regulator protein, MerR family YP_001770678.1 KEGG: mex:Mext_1249 hypothetical protein YP_001770681.1 KEGG: bra:BRADO6948 hypothetical protein YP_001770684.1 KEGG: bja:bll5004 hypothetical protein YP_001770685.1 PFAM: integrase family protein; KEGG: oan:Oant_0882 phage integrase family protein YP_001770686.1 PFAM: integrase family protein; KEGG: rsh:Rsph17029_3294 phage integrase family protein YP_001770688.1 PFAM: isochorismatase hydrolase; KEGG: mex:Mext_3854 isochorismatase hydrolase YP_001770689.1 KEGG: mex:Mext_3785 chromosome segregation ATPase-like protein YP_001770690.1 KEGG: rle:pRL70138 putative insertion sequence transposase-like protein YP_001770691.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: ret:RHE_PA00078 putative insertion sequence ATP-binding protein, IS21 family YP_001770692.1 PFAM: Integrase catalytic region; KEGG: swi:Swit_5106 integrase, catalytic region YP_001770693.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: kra:Krad_2428 NADH:flavin oxidoreductase/NADH oxidase YP_001770694.1 PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_0182 extracellular ligand-binding receptor YP_001770695.1 PFAM: class II aldolase/adducin family protein; KEGG: pnu:Pnuc_1545 hypothetical protein YP_001770696.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xau:Xaut_0881 transcriptional regulator, LysR family YP_001770697.1 KEGG: mlo:mlr1044 cytochrome c oxidase subunit IV YP_001770698.1 PFAM: cytochrome c oxidase subunit III; KEGG: mlo:mlr1043 cytochrome c oxidase subunit III YP_001770699.1 KEGG: bja:bll3783 cytochrome c oxidase YP_001770700.1 KEGG: bja:bll3784 cytochrome c oxidase; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I YP_001770701.1 PFAM: cytochrome c oxidase subunit II; KEGG: mes:Meso_2474 cytochrome c oxidase, subunit II YP_001770702.1 KEGG: mlo:mll1046 cytochrome c oxidase subunit I YP_001770703.1 PFAM: Cache type 2 domain protein; KEGG: bja:bll7295 hypothetical protein YP_001770704.1 KEGG: mex:Mext_3063 diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001770705.1 PFAM: heat shock protein Hsp20; KEGG: sal:Sala_0383 heat shock protein HSP20 YP_001770706.1 KEGG: pna:Pnap_4542 hypothetical protein YP_001770707.1 KEGG: mex:Mext_4322 hypothetical protein YP_001770709.1 PFAM: monooxygenase FAD-binding; KEGG: bvi:Bcep1808_6380 hypothetical protein YP_001770710.1 PFAM: protein of unknown function DUF485; KEGG: psa:PST_1431 hypothetical protein YP_001770711.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: rru:Rru_A0635 Na+/solute symporter YP_001770712.1 KEGG: msm:MSMEG_6488 hypothetical protein YP_001770713.1 PFAM: regulatory protein TetR; KEGG: reu:Reut_B5643 regulatory protein, TetR YP_001770714.1 KEGG: mex:Mext_1455 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001770716.1 KEGG: mex:Mext_2196 hypothetical protein YP_001770718.1 KEGG: xau:Xaut_3249 VanZ family protein YP_001770719.1 PFAM: TadE family protein; KEGG: mex:Mext_0138 TadE family protein YP_001770720.1 KEGG: mex:Mext_0137 hypothetical protein YP_001770722.1 PFAM: extracellular solute-binding protein family 5; KEGG: bja:blr3931 probable substrate-binding protein YP_001770723.1 KEGG: azc:AZC_2011 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001770724.1 KEGG: azc:AZC_2012 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001770725.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_5120 putative ABC transporter permease protein YP_001770726.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr3342 ABC transporter permease protein YP_001770727.1 PFAM: extracellular solute-binding protein family 5; KEGG: bja:blr3341 ABC transporter substrate-binding protein YP_001770728.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides YP_001770729.1 KEGG: mex:Mext_2123 hypothetical protein YP_001770730.1 PFAM: Hydratase/decarboxylase; KEGG: reh:H16_B0884 2-oxopent-4-enoate hydratase YP_001770731.1 PFAM: peptidase M32 carboxypeptidase Taq metallopeptidase; KEGG: mex:Mext_0276 carboxypeptidase Taq YP_001770733.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: afw:Anae109_1554 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001770734.1 KEGG: pfl:PFL_1534 hypothetical protein YP_001770735.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rpc:RPC_0910 L-carnitine dehydratase/bile acid-inducible protein F YP_001770736.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pae:PA2552 probable acyl-CoA dehydrogenase YP_001770737.1 PFAM: flagellin domain protein; KEGG: mex:Mext_0677 flagellin domain protein YP_001770738.1 PFAM: protein of unknown function YGGT; KEGG: mex:Mext_3782 protein of unknown function YGGT YP_001770739.1 PFAM: protein of unknown function DUF167; KEGG: xau:Xaut_0507 protein of unknown function DUF167 YP_001770740.1 PFAM: MaoC domain protein dehydratase; KEGG: mex:Mext_3781 MaoC domain protein dehydratase YP_001770741.1 PFAM: regulatory protein MarR; iron dependent repressor; KEGG: mex:Mext_3596 iron dependent repressor YP_001770742.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_2850 binding-protein-dependent transport systems inner membrane component YP_001770743.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_2851 ABC transporter related YP_001770744.1 PFAM: extracellular solute-binding protein family 1; KEGG: bja:bll6227 hypothetical protein YP_001770745.1 KEGG: mex:Mext_1373 glycosyl transferase group 1 YP_001770746.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mex:Mext_0824 response regulator receiver YP_001770747.1 involved in type III protein export during flagellum assembly YP_001770748.1 TIGRFAM: flagellar export protein FliJ; KEGG: mex:Mext_0822 flagellar export protein FliJ YP_001770749.1 PFAM: GCN5-related N-acetyltransferase; KEGG: swi:Swit_1399 GCN5-related N-acetyltransferase YP_001770750.1 PFAM: alpha/beta hydrolase fold; KEGG: aeh:Mlg_1591 alpha/beta hydrolase fold YP_001770751.1 KEGG: mex:Mext_0821 hypothetical protein YP_001770752.1 KEGG: dvl:Dvul_2627 hypothetical protein YP_001770753.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rpe:RPE_0509 cation diffusion facilitator family transporter YP_001770754.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: dac:Daci_4907 L-carnitine dehydratase/bile acid-inducible protein F YP_001770755.1 PFAM: Citrate synthase; KEGG: mlo:mlr3843 citrate synthase II YP_001770756.1 membrane protein involved in the flagellar export apparatus YP_001770757.1 KEGG: bja:bll8026 hypothetical protein YP_001770758.1 KEGG: mex:Mext_0817 hypothetical protein YP_001770760.1 KEGG: bra:BRADO2937 conserved hypothetical protein; putative signal peptide YP_001770763.1 PFAM: response regulator receiver; KEGG: mex:Mext_0851 response regulator receiver YP_001770764.1 KEGG: amr:AM1_1534 hypothetical protein YP_001770765.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:bll4537 hypothetical protein YP_001770766.1 KEGG: bja:blr4539 hypothetical protein YP_001770767.1 PFAM: protein of unknown function DUF181; KEGG: bja:blr4538 hypothetical protein YP_001770768.1 KEGG: mmu:77922 RIKEN cDNA A030005L19 gene YP_001770770.1 KEGG: mex:Mext_4377 hypothetical protein YP_001770773.1 KEGG: mex:Mext_4377 hypothetical protein YP_001770777.1 PFAM: protein of unknown function DUF534; KEGG: rle:pRL110111 hypothetical protein YP_001770778.1 KEGG: jan:Jann_0234 hypothetical protein YP_001770779.1 KEGG: xau:Xaut_1087 AAA ATPase YP_001770781.1 PFAM: Prophage CP4-57 regulatory YP_001770782.1 PFAM: integrase family protein; KEGG: atc:AGR_L_2007 hypothetical protein YP_001770783.1 KEGG: mex:Mext_4522 hypothetical protein YP_001770784.1 KEGG: net:Neut_0153 hypothetical protein YP_001770785.1 PFAM: glycosyl transferase group 1; KEGG: cch:Cag_1481 glycosyltransferase-like YP_001770786.1 PFAM: glycosyl transferase group 1; KEGG: sus:Acid_6233 glycosyl transferase, group 1 YP_001770787.1 KEGG: sun:SUN_1733 hypothetical protein YP_001770788.1 KEGG: mex:Mext_0832 hypothetical protein YP_001770790.1 KEGG: mmr:Mmar10_1833 hypothetical protein YP_001770792.1 PFAM: transposase IS3/IS911 family protein; KEGG: hha:Hhal_0617 transposase IS3/IS911 family protein YP_001770796.1 PFAM: glycosyl transferase family 2; KEGG: ana:alr3176 probable glycosyl transferase YP_001770797.1 KEGG: mex:Mext_0832 hypothetical protein YP_001770798.1 KEGG: oan:Oant_0651 hypothetical protein YP_001770799.1 KEGG: bra:BRADO0294 putative transposase IS66 family YP_001770801.1 KEGG: chy:CHY_2107 Na+/H+ antiporter YP_001770802.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pae:PA2319 probable transposase YP_001770803.1 PFAM: Integrase catalytic region; KEGG: sen:SACE_5091 transposase YP_001770804.1 PFAM: transposase IS3/IS911 family protein; KEGG: aav:Aave_4117 transposase IS3/IS911 family protein YP_001770805.1 KEGG: mlo:mlr2295 probable transporter YP_001770806.1 PFAM: monooxygenase FAD-binding; KEGG: scl:sce4847 hypothetical protein YP_001770807.1 KEGG: mex:Mext_0739 hypothetical protein YP_001770808.1 PFAM: Integrase catalytic region; KEGG: sen:SACE_5091 transposase YP_001770810.1 PFAM: transposase IS4 family protein; KEGG: ana:alr7249 unknown protein YP_001770811.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: rpa:RPA3475 putative transposase YP_001770812.1 KEGG: amr:AM1_E0006 transposase, IS4 family, putative YP_001770813.1 PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_4038 major facilitator superfamily MFS_1 YP_001770814.1 PFAM: BLUF domain protein; KEGG: swi:Swit_4662 BLUF domain protein YP_001770815.1 KEGG: mag:amb0411 transposase YP_001770816.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: rpe:RPE_4261 GDP-mannose 4,6-dehydratase YP_001770817.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: hne:HNE_2698 NAD-dependent epimerase/dehydratase family protein YP_001770818.1 PFAM: polysaccharide export protein; KEGG: mes:Meso_0652 polysaccharide export protein YP_001770819.1 PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_2752 glycosyl transferase group 1 YP_001770820.1 PFAM: glycosyl transferase group 1; KEGG: mth:MTH173 LPS biosynthesis RfbU related protein YP_001770821.1 PFAM: glycosyl transferase family 2; KEGG: rxy:Rxyl_3149 glycosyl transferase, family 2 YP_001770822.1 PFAM: glycosyl transferase family 2; KEGG: gme:Gmet_2879 glycosyl transferase, family 2 YP_001770823.1 PFAM: O-antigen polymerase; KEGG: sma:SAV5357 hypothetical protein YP_001770824.1 KEGG: sus:Acid_3644 alpha-N-arabinofuranosidase YP_001770825.1 PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: ret:RHE_CH03771 putative polysaccharide biosynthesis associated protein YP_001770826.1 KEGG: acr:Acry_1523 non-specific protein-tyrosine kinase YP_001770827.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: amr:AM1_2189 NAD-dependent epimerase/dehydratase YP_001770828.1 PFAM: Nucleotidyl transferase; KEGG: har:HEAR1136 glucose-1-phosphate cytidylyltransferase (CDP-glucose pyrophosphorylase) YP_001770829.1 PFAM: sugar transferase; KEGG: ret:RHE_CH03328 exopolysaccharide production protein YP_001770830.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ade:Adeh_3061 DegT/DnrJ/EryC1/StrS aminotransferase YP_001770831.1 PFAM: glycosyl transferase group 1; KEGG: fra:Francci3_1364 phosphatidyl-myo-inositol alpha-mannosyltransferase YP_001770832.1 PFAM: glycosyl transferase family 2; KEGG: reu:Reut_B4384 glycosyl transferase, family 2 YP_001770833.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: mex:Mext_2763 cyclic nucleotide-binding YP_001770834.1 PFAM: cyclic nucleotide-binding; KEGG: bja:blr1247 hypothetical protein YP_001770835.1 PFAM: Transthyretin; KEGG: bja:blr3283 hypothetical transthyretin-like protein YP_001770836.1 PFAM: Amidase; KEGG: pol:Bpro_0559 amidase YP_001770837.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: azc:AZC_1972 ABC transporter ATP-binding protein YP_001770838.1 PFAM: extracellular solute-binding protein family 1; KEGG: bra:BRADO0873 putative ABC transporter (substrate binding protein) YP_001770839.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_1970 ABC transporter permease protein 2 YP_001770840.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll3284 ABC transporter permease protein YP_001770841.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: azc:AZC_1967 regulatory protein YP_001770842.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: mex:Mext_3055 lytic murein transglycosylase YP_001770843.1 KEGG: bja:blr0401 hypothetical protein YP_001770844.1 PFAM: protein of unknown function UPF0061; KEGG: bja:bll4142 hypothetical protein YP_001770845.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mex:Mext_1218 GntR domain protein YP_001770846.1 KEGG: mex:Mext_1206 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001770847.1 catalyzes the formation of oxalyl-CoA from oxalate and Formyl-CoA YP_001770848.1 PFAM: CBS domain containing protein; HPP family protein?; KEGG: atc:AGR_C_2783 CBS domain-containing membrane protein YP_001770849.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: acr:Acry_2400 cupin 2, conserved barrel domain protein YP_001770850.1 PFAM: phospholipase/Carboxylesterase; KEGG: mex:Mext_1208 phospholipase/carboxylesterase YP_001770851.1 catalyzes the formation of formyl-CoA from oxalyl-CoA YP_001770852.1 PFAM: band 7 protein; KEGG: oan:Oant_3650 band 7 protein YP_001770853.1 PFAM: phosphate-selective porin O and P; KEGG: mex:Mext_3657 phosphate-selective porin O and P YP_001770856.1 TIGRFAM: methyltransferase FkbM family; KEGG: bja:blr2062 nodulation protein YP_001770857.1 PFAM: integrase family protein; KEGG: mex:Mext_4388 integrase family protein YP_001770858.1 PFAM: protein of unknown function DUF1643; KEGG: smu:SMU.1230c hypothetical protein YP_001770862.1 PFAM: plasmid stabilization system; KEGG: rpc:RPC_3073 plasmid stabilization system YP_001770863.1 PFAM: helix-turn-helix domain protein; KEGG: rpc:RPC_3072 transcriptional regulator, XRE family YP_001770866.1 KEGG: ade:Adeh_1681 PE-PGRS family protein YP_001770867.1 PFAM: RecT protein; KEGG: nar:Saro_2699 RecT protein YP_001770868.1 KEGG: oan:Oant_1550 hypothetical protein YP_001770874.1 PFAM: peptidase S24 and S26 domain protein; KEGG: mes:Meso_1193 putative phage repressor YP_001770882.1 KEGG: mgm:Mmc1_2765 putative bacteriophage-related protein YP_001770884.1 PFAM: MT-A70 family protein; KEGG: rsh:Rsph17029_0660 MT-A70 family protein YP_001770887.1 PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; KEGG: azc:AZC_0834 DnaB helicase YP_001770888.1 KEGG: ppf:Pput_3394 hypothetical protein YP_001770889.1 PFAM: ROSMUCR transcriptional regulator; KEGG: mlo:mll6119 transcriptional regulatory protein YP_001770893.1 KEGG: rsq:Rsph17025_0097 hypothetical protein YP_001770905.1 KEGG: rsh:Rsph17029_3334 hypothetical protein YP_001770906.1 KEGG: mex:Mext_4382 hypothetical protein YP_001770907.1 PFAM: ROSMUCR transcriptional regulator; KEGG: mlo:mlr4210 MucR family transcriptional regulatory protein YP_001770908.1 KEGG: smd:Smed_1636 putative transmembrane protein YP_001770911.1 KEGG: spn:SP_1772 cell wall surface anchor family protein YP_001770913.1 KEGG: bte:BTH_I1345 GP48, putative YP_001770915.1 PFAM: late control D family protein; KEGG: oan:Oant_1485 phage late control D family protein YP_001770916.1 PFAM: tail X family protein YP_001770917.1 PFAM: P2 GpU family protein; KEGG: csa:Csal_1373 phage P2 GpU YP_001770918.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: oan:Oant_0888 phage tail tape measure protein, TP901 family YP_001770920.1 PFAM: major tail tube protein; KEGG: oan:Oant_1490 phage tail tube protein FII-like protein YP_001770921.1 KEGG: oan:Oant_1491 hypothetical protein YP_001770922.1 KEGG: oan:Oant_2296 hypothetical protein YP_001770924.1 KEGG: ppu:PP_3056 pyocin R2_PP, tail fiber protein, putative YP_001770925.1 TIGRFAM: phage tail protein I; PFAM: tail protein I; KEGG: xac:XAC2656 phage-related tail protein YP_001770926.1 PFAM: Baseplate J family protein; KEGG: sit:TM1040_1291 baseplate J-like protein YP_001770927.1 PFAM: GPW/gp25 family protein; KEGG: oan:Oant_1499 gpW/GP25 family protein YP_001770929.1 TIGRFAM: phage baseplate assembly protein V; KEGG: btr:Btr_2619 phage-related baseplate assembly protein YP_001770930.1 KEGG: oan:Oant_1501 hypothetical protein YP_001770931.1 KEGG: oan:Oant_1502 hypothetical protein YP_001770932.1 KEGG: mes:Meso_1217 phage protein GP20 YP_001770933.1 KEGG: bxe:Bxe_A3061 putative phage protein GP19 YP_001770934.1 PFAM: peptidase S49; KEGG: rsq:Rsph17025_0104 peptidase S49 YP_001770936.1 TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; KEGG: nha:Nham_2391 phage portal protein, lambda YP_001770937.1 PFAM: terminase GpA; KEGG: oan:Oant_1506 phage terminase GpA YP_001770938.1 KEGG: rsq:Rsph17025_0101 hypothetical protein YP_001770939.1 KEGG: rle:RL1523 hypothetical protein YP_001770942.1 KEGG: abo:ABO_0763 hypothetical protein YP_001770944.1 KEGG: ddi:DDBDRAFT_0187223 hypothetical protein YP_001770945.1 KEGG: bbt:BBta_6604 hypothetical protein YP_001770948.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nwi:Nwi_2018 GCN5-related N-acetyltransferase YP_001770953.1 KEGG: mex:Mext_3698 putative insertion sequence transposase protein YP_001770954.1 KEGG: bja:bll6810 transcriptional regulatory protein YP_001770955.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pae:PA2319 probable transposase YP_001770956.1 PFAM: regulatory protein LacI; KEGG: ret:RHE_CH01213 probable transcriptional regulator protein, LacI family YP_001770957.1 PFAM: transposase mutator type; KEGG: swi:Swit_4911 transposase, mutator type YP_001770958.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: nha:Nham_4315 transposase IS116/IS110/IS902 YP_001770959.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: mex:Mext_4442 thioredoxin YP_001770960.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rba:RB9386 probable FixW protein YP_001770961.1 PFAM: peptidase M16 domain protein; KEGG: mex:Mext_2328 peptidase M16 domain protein YP_001770962.1 PFAM: peptidase M16 domain protein; KEGG: mex:Mext_2329 peptidase M16 domain protein YP_001770963.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: azc:AZC_4173 short-chain dehydrogenase YP_001770964.1 TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: mex:Mext_4375 peptide chain release factor 3 YP_001770965.1 PFAM: response regulator receiver; KEGG: mex:Mext_0948 response regulator receiver YP_001770966.1 PFAM: BLUF domain protein; KEGG: mex:Mext_0949 BLUF domain protein YP_001770967.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: mex:Mext_0950 protein of unknown function DUF1078 domain protein YP_001770968.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; KEGG: mex:Mext_0951 flagellar hook-associated protein FlgK YP_001770969.1 KEGG: mex:Mext_0952 hypothetical protein YP_001770970.1 KEGG: mex:Mext_3110 porin YP_001770971.1 KEGG: mex:Mext_3043 hypothetical protein YP_001770972.1 KEGG: mex:Mext_3042 hypothetical protein YP_001770973.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_001770974.1 KEGG: mex:Mext_3040 hypothetical protein YP_001770975.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: mex:Mext_3038 membrane bound O-acyl transferase MBOAT family protein YP_001770976.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: mex:Mext_3036 RNA polymerase-binding protein DksA YP_001770977.1 PFAM: GcrA cell cycle regulator; KEGG: mmr:Mmar10_0485 GcrA cell cycle regulator YP_001770978.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod YP_001770979.1 TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: mex:Mext_3046 flagella basal body P-ring formation protein FlgA YP_001770980.1 TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: mex:Mext_3047 flagellar basal-body rod protein FlgG YP_001770981.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum YP_001770982.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring YP_001770983.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum YP_001770984.1 KEGG: mex:Mext_3051 hypothetical protein YP_001770985.1 KEGG: mex:Mext_3052 hypothetical protein YP_001770986.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: azc:AZC_0724 putative histidine kinase YP_001770987.1 PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; KEGG: pen:PSEEN2193 DNA topoisomerase III YP_001770988.1 KEGG: mex:Mext_0906 hypothetical protein YP_001770990.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; KEGG: mlo:mlr3504 hypothetical protein YP_001770991.1 KEGG: mex:Mext_4417 hypothetical protein YP_001770992.1 KEGG: mex:Mext_4416 hypothetical protein YP_001770993.1 PFAM: ribosomal protein L21; KEGG: mex:Mext_4414 ribosomal protein L21 YP_001770994.1 involved in the peptidyltransferase reaction during translation YP_001770995.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mex:Mext_4412 GCN5-related N-acetyltransferase YP_001770996.1 TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP-binding protein HSR1-related; GTP1/OBG sub domain protein; KEGG: mex:Mext_4410 GTP-binding protein Obg/CgtA YP_001770997.1 PFAM: response regulator receiver; KEGG: mex:Mext_3363 response regulator receiver YP_001770998.1 KEGG: mex:Mext_1190 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001770999.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_001771000.1 KEGG: mex:Mext_3098 hypothetical protein YP_001771001.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_001771002.1 TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; KEGG: mex:Mext_2869 nicotinate (nicotinamide) nucleotide adenylyltransferase YP_001771003.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: mex:Mext_2870 iojap-like protein YP_001771004.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_001771005.1 PFAM: peptidase M23B; KEGG: mex:Mext_2288 peptidase M23B YP_001771006.1 KEGG: mex:Mext_2287 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_001771007.1 PFAM: protein of unknown function DUF610 YibQ; KEGG: mex:Mext_2286 protein of unknown function DUF610 YibQ YP_001771008.1 PFAM: NUDIX hydrolase; KEGG: bbt:BBta_0412 (di)nucleoside polyphosphate hydrolase YP_001771009.1 KEGG: mex:Mext_2283 hypothetical protein YP_001771010.1 PFAM: Carbohydrate-selective porin OprB; KEGG: mex:Mext_1384 carbohydrate-selective porin OprB YP_001771011.1 PFAM: heat shock protein Hsp20; KEGG: mex:Mext_1620 heat shock protein HSP20 YP_001771012.1 PFAM: protein of unknown function DUF1150; KEGG: mex:Mext_1621 protein of unknown function DUF1150 YP_001771013.1 KEGG: mex:Mext_1622 hypothetical protein YP_001771014.1 PFAM: glycosyl transferase group 1; KEGG: mex:Mext_1623 glycosyl transferase group 1 YP_001771015.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_001771016.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile YP_001771017.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: mex:Mext_1632 UBA/ThiF-type NAD/FAD binding protein YP_001771018.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_001771019.1 KEGG: sme:SMc01097 hypothetical/unknown transmembrane protein YP_001771020.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: oan:Oant_2454 methyltransferase type 11 YP_001771021.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_001771022.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: mex:Mext_1635 methionyl-tRNA formyltransferase YP_001771023.1 KEGG: mex:Mext_1636 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_001771024.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_001771025.1 PFAM: conserved hypothetical protein; KEGG: mex:Mext_1860 hypothetical protein YP_001771026.1 KEGG: mex:Mext_1861 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase YP_001771027.1 PFAM: alpha/beta hydrolase fold; KEGG: psa:PST_2922 hydrolase, alpha/beta fold family YP_001771028.1 PFAM: peptidase S45 penicillin amidase; KEGG: oih:OB3304 penicillin acylase YP_001771030.1 TIGRFAM: helicase, RecD/TraA family; SMART: Helix-hairpin-helix DNA-binding class 1; AAA ATPase; KEGG: mex:Mext_0009 helicase, RecD/TraA family YP_001771031.1 KEGG: mex:Mext_0585 putative membrane protein of unknown function YP_001771032.1 KEGG: mex:Mext_0586 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein YP_001771033.1 KEGG: mex:Mext_3155 putative ICC-like phosphoesterase YP_001771034.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases; KEGG: mex:Mext_3154 DEAD/H associated domain protein YP_001771035.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_001771036.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_001771037.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_001771038.1 PFAM: OsmC family protein; KEGG: azc:AZC_2977 organic hydroperoxide resistance protein YP_001771039.1 PFAM: regulatory protein MarR; KEGG: bja:blr0736 transcriptional regulatory protein YP_001771040.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bur:Bcep18194_B1242 NADH-flavin oxidoreductase/NADH oxidase YP_001771041.1 PFAM: Class I peptide chain release factor; KEGG: mex:Mext_3233 class I peptide chain release factor YP_001771043.1 PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: mex:Mext_1928 transglutaminase family protein cysteine peptidase BTLCP YP_001771044.1 PFAM: Putative ParB-like nuclease; KEGG: mex:Mext_0727 putative ParB-like nuclease YP_001771046.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mex:Mext_3587 ErfK/YbiS/YcfS/YnhG family protein YP_001771047.1 KEGG: noc:Noc_1207 hypothetical protein YP_001771048.1 KEGG: noc:Noc_1208 hypothetical protein YP_001771049.1 KEGG: noc:Noc_1209 hypothetical protein YP_001771050.1 PFAM: polysaccharide deacetylase; KEGG: bcs:BCAN_A0355 chitin deacetylase YP_001771051.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cph:Cpha266_1072 GCN5-related N-acetyltransferase YP_001771052.1 KEGG: azc:AZC_3687 hypothetical protein YP_001771054.1 TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); KEGG: mex:Mext_0935 DNA-3-methyladenine glycosylase YP_001771055.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: azc:AZC_4114 alpha amylase YP_001771056.1 PFAM: glutamine amidotransferase class-I; KEGG: mex:Mext_3437 glutamine amidotransferase class-I YP_001771057.1 PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mex:Mext_1181 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001771058.1 TIGRFAM: phasin; PFAM: Phasin 2 family protein; KEGG: mex:Mext_2560 phasin YP_001771059.1 PFAM: CsbD family protein; KEGG: aba:Acid345_2041 CsbD-like protein YP_001771060.1 KEGG: mex:Mext_4503 SNARE associated Golgi protein YP_001771061.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mex:Mext_0021 short-chain dehydrogenase/reductase SDR YP_001771062.1 PFAM: sodium/hydrogen exchanger; KEGG: gdi:GDI1813 putative cell volume regulation protein A YP_001771063.1 KEGG: cvi:CV_1661 hypothetical protein YP_001771064.1 PFAM: conserved hypothetical protein; KEGG: pol:Bpro_3011 twin-arginine translocation pathway signal YP_001771065.1 KEGG: pol:Bpro_3010 hypothetical protein YP_001771066.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: pol:Bpro_3009 protein of unknown function DUF112, transmembrane YP_001771067.1 PFAM: Integrase catalytic region; KEGG: gsu:GSU3083 ISGsu7, transposase OrfB YP_001771068.1 KEGG: gsu:GSU3082 ISGsu7, transposase OrfA YP_001771069.1 KEGG: bpd:BURPS668_3045 signal recognition particle GTPase YP_001771070.1 KEGG: bpd:BURPS668_3046 hypothetical protein YP_001771072.1 KEGG: nwi:Nwi_1140 phage integrase YP_001771078.1 KEGG: rpa:RPA3773 hypothetical protein YP_001771081.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: tbd:Tbd_1371 conserved hypothetical protein containing TPR repeat YP_001771082.1 KEGG: amr:AM1_2608 glutathione S-transferase, putative YP_001771083.1 PFAM: monooxygenase FAD-binding; KEGG: scl:sce4847 hypothetical protein YP_001771085.1 PFAM: cytochrome P450; KEGG: mes:Meso_4213 fatty acid alpha hydroxylase, cytochrome P450 YP_001771086.1 PFAM: transposase IS111A/IS1328/IS1533; KEGG: acr:Acry_3394 transposase IS116/IS110/IS902 family protein YP_001771087.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pla:Plav_2291 methyltransferase type 11 YP_001771088.1 PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_3099 putative oxalate/formate antiporter YP_001771089.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: mex:Mext_2628 maf protein YP_001771090.1 PFAM: protein of unknown function DUF329; KEGG: xau:Xaut_2724 protein of unknown function DUF329 YP_001771091.1 KEGG: xcb:XC_2373 hypothetical protein YP_001771092.1 KEGG: mmu:100042292 similar to CG10953-PA YP_001771093.1 TIGRFAM: DNA repair protein RecO; KEGG: mex:Mext_1051 DNA repair protein RecO YP_001771094.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001771095.1 activates fatty acids by binding to coenzyme A; may be involved in acyclic terpene utilization YP_001771096.1 KEGG: rpb:RPB_1001 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_001771097.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis YP_001771098.1 PFAM: polysaccharide biosynthesis protein; KEGG: pla:Plav_2996 polysaccharide biosynthesis protein YP_001771099.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mex:Mext_0961 alcohol dehydrogenase zinc-binding domain protein YP_001771100.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: rpd:RPD_4378 cytochrome bd ubiquinol oxidase, subunit I YP_001771101.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: pde:Pden_4011 cytochrome d ubiquinol oxidase, subunit II YP_001771103.1 KEGG: rle:pRL90275 putative transcriptional regulator YP_001771104.1 KEGG: mex:Mext_3290 hypothetical protein YP_001771105.1 PFAM: protein of unknown function DUF1465; KEGG: mex:Mext_2354 protein of unknown function DUF1465 YP_001771106.1 TIGRFAM: ribosomal protein L31; KEGG: mex:Mext_2355 ribosomal protein L31 YP_001771107.1 KEGG: mex:Mext_2356 lipid A ABC exporter family, fused ATPase and inner membrane subunits; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase YP_001771108.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; FeS assembly scaffold SufA; PFAM: HesB/YadR/YfhF-family protein; KEGG: mex:Mext_3982 FeS assembly scaffold SufA YP_001771109.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mex:Mext_3983 diguanylate cyclase YP_001771110.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mex:Mext_3984 DEAD/DEAH box helicase domain protein YP_001771112.1 KEGG: mex:Mext_4443 porin YP_001771113.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/Yqey domain protein; GatB region; GatB central domain protein; KEGG: mex:Mext_3064 glutamyl-tRNA(Gln) amidotransferase, B subunit YP_001771114.1 KEGG: mex:Mext_3324 hypothetical protein YP_001771115.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001771116.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: mex:Mext_3322 glutamyl-tRNA(Gln) amidotransferase, C subunit YP_001771117.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: psp:PSPPH_5174 ABC transporter, permease protein YP_001771118.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xau:Xaut_1270 ABC transporter related YP_001771120.1 PFAM: beta-lactamase domain protein; KEGG: sme:SMc01354 metal-dependent hydrolase YP_001771121.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: mex:Mext_3319 Holliday junction resolvase YqgF YP_001771122.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: mex:Mext_3315 DNA protecting protein DprA YP_001771123.1 PFAM: protein of unknown function DUF205; KEGG: mex:Mext_3314 protein of unknown function DUF205 YP_001771124.1 KEGG: mex:Mext_3313 dihydroorotase, multifunctional complex type; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase YP_001771126.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_001771127.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_001771129.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001771130.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:bll5566 putative sorbitol dehydrogenase YP_001771131.1 KEGG: mex:Mext_2391 hypothetical protein YP_001771132.1 PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: rpa:RPA1931 methyl-accepting chemotaxis receptor/sensory transducer YP_001771133.1 KEGG: mex:Mext_4757 hypothetical protein YP_001771134.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rle:RL2084 putative acetyltransferase YP_001771135.1 KEGG: mex:Mext_4758 hypothetical protein YP_001771136.1 PFAM: Glutathione S-transferase domain; KEGG: mex:Mext_4759 glutathione S-transferase domain YP_001771137.1 KEGG: mex:Mext_2011 hypothetical protein YP_001771138.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_001771139.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rpa:RPA4231 putative oxidoreductase YP_001771140.1 KEGG: mex:Mext_2013 hypothetical protein YP_001771141.1 PFAM: regulatory protein ArsR; UbiE/COQ5 methyltransferase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: mex:Mext_1599 methyltransferase type 11 YP_001771142.1 KEGG: mex:Mext_1600 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_001771143.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity YP_001771144.1 KEGG: mex:Mext_1452 hypothetical protein YP_001771145.1 KEGG: mex:Mext_1451 hypothetical protein YP_001771146.1 TIGRFAM: formaldehyde-activating enzyme; PFAM: Formaldehyde-activating enzyme (Fae); KEGG: mex:Mext_1450 formaldehyde-activating enzyme YP_001771147.1 PFAM: Collagen triple helix repeat; KEGG: mex:Mext_0878 collagen triple helix repeat YP_001771148.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mex:Mext_0879 HI0933 family protein YP_001771149.1 PFAM: Integral membrane protein TerC; KEGG: mex:Mext_0880 integral membrane protein TerC YP_001771150.1 PFAM: aminotransferase class V; KEGG: rme:Rmet_5630 aminotransferase, class V YP_001771151.1 PFAM: Peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase family 2; KEGG: mex:Mext_0941 N-acetylmuramoyl-L-alanine amidase family 2 YP_001771152.1 PFAM: heat shock protein DnaJ domain protein; KEGG: mex:Mext_0942 heat shock protein DnaJ domain protein YP_001771153.1 KEGG: mex:Mext_0943 hypothetical protein YP_001771154.1 PFAM: UreE urease accessory domain protein; KEGG: mex:Mext_0944 UreE urease accessory domain protein YP_001771155.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: mex:Mext_0946 dihydrouridine synthase DuS YP_001771156.1 KEGG: mex:Mext_0907 conserved hypothetical transmembrane signal peptide protein YP_001771157.1 PFAM: protein of unknown function DUF1289; KEGG: mex:Mext_0908 protein of unknown function DUF1289 YP_001771158.1 PFAM: cobalamin-5-phosphate synthase CobS; KEGG: mex:Mext_0910 cobalamin 5'-phosphate synthase YP_001771159.1 KEGG: mex:Mext_0911 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_001771160.1 KEGG: mex:Mext_4419 hypothetical protein YP_001771162.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: rso:RS05067 probable transmembrane protein YP_001771163.1 KEGG: ter:Tery_2708 tetratricopeptide TPR_2 YP_001771164.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: mex:Mext_0820 chemotaxis sensory transducer YP_001771165.1 PFAM: SCP-like extracellular; KEGG: mex:Mext_1086 SCP-like extracellular YP_001771166.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: mex:Mext_1085 NADH-ubiquinone/plastoquinone oxidoreductase chain 3 YP_001771167.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_001771168.1 KEGG: mex:Mext_1083 NADH (or F420H2) dehydrogenase, subunit C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit YP_001771169.1 KEGG: mex:Mext_1082 NADH dehydrogenase I, D subunit; TIGRFAM: NADH dehydrogenase I, D subunit; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa YP_001771170.1 KEGG: mex:Mext_1081 NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit YP_001771171.1 part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase YP_001771172.1 Catalyzes the transfer of electrons from NADH to quinone YP_001771173.1 Catalyzes the transfer of electrons from NADH to quinone YP_001771174.1 Catalyzes the transfer of electrons from NADH to quinone YP_001771175.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: mex:Mext_1076 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_001771176.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: mex:Mext_1075 NADH-ubiquinone oxidoreductase chain 4L YP_001771177.1 KEGG: mex:Mext_1074 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I) YP_001771178.1 KEGG: mex:Mext_1073 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_001771179.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: mex:Mext_1072 proton-translocating NADH-quinone oxidoreductase, chain N YP_001771180.1 TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: mex:Mext_1071 biotin--acetyl-CoA-carboxylase ligase YP_001771181.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: mex:Mext_1070 beta-lactamase domain protein YP_001771182.1 KEGG: azc:AZC_1684 methylmalonyl-CoA epimerase; TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_001771183.1 PFAM: protein of unknown function DUF1467; KEGG: mex:Mext_1068 protein of unknown function DUF1467 YP_001771184.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_001771185.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: mex:Mext_1065 lipoprotein releasing system, transmembrane protein, LolC/E family YP_001771186.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_1064 ABC transporter related YP_001771187.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_2515 binding-protein-dependent transport systems inner membrane component YP_001771188.1 KEGG: mex:Mext_2516 hypothetical protein YP_001771189.1 PFAM: aminotransferase class V; aminotransferase class I and II; KEGG: mex:Mext_2517 aminotransferase class I and II YP_001771191.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mex:Mext_2519 efflux transporter, RND family, MFP subunit YP_001771192.1 PFAM: acriflavin resistance protein; KEGG: mex:Mext_2520 acriflavin resistance protein YP_001771193.1 PFAM: acriflavin resistance protein; KEGG: mex:Mext_2521 acriflavin resistance protein YP_001771194.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: mex:Mext_2522 RND efflux system, outer membrane lipoprotein, NodT family YP_001771195.1 KEGG: bra:BRADO0587 conserved hypothetical protein; putative vWFA domain YP_001771196.1 PFAM: restriction endonuclease; KEGG: mex:Mext_4774 restriction endonuclease YP_001771197.1 PFAM: protein of unknown function DUF1194; KEGG: rpd:RPD_1316 protein of unknown function DUF1194 YP_001771198.1 PFAM: ROSMUCR transcriptional regulator; KEGG: azc:AZC_1086 putative transcriptional regulator YP_001771199.1 KEGG: mex:Mext_4777 adenylyl cyclase class-3/4/guanylyl cyclase YP_001771200.1 KEGG: mex:Mext_0456 hypothetical protein YP_001771201.1 KEGG: bra:BRADO1923 conserved hypothetical protein; putative signal peptide; putative calcium-binding protein YP_001771202.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: ret:RHE_CH02715 probable hemolysin protein YP_001771203.1 PFAM: type IV pilus assembly PilZ; KEGG: mex:Mext_2258 type IV pilus assembly PilZ YP_001771204.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mex:Mext_2513 diguanylate cyclase YP_001771205.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mex:Mext_2513 diguanylate cyclase YP_001771206.1 PFAM: cytochrome C biogenesis protein; KEGG: mex:Mext_1405 cytochrome c biogenesis protein YP_001771207.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: mex:Mext_1406 cytochrome c assembly protein YP_001771208.1 PFAM: CcmE/CycJ protein; KEGG: mex:Mext_1407 CcmE/CycJ protein YP_001771209.1 TIGRFAM: cytochrome c-type biogenesis protein CcmI; KEGG: mex:Mext_1408 cytochrome c-type biogenesis protein CcmI YP_001771210.1 PFAM: major facilitator superfamily MFS_1; KEGG: bpt:Bpet2901 MFS permease YP_001771211.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: mex:Mext_1409 ATP-binding region ATPase domain protein YP_001771212.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mex:Mext_1411 response regulator receiver YP_001771214.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: mex:Mext_1429 peptidase S1 and S6 chymotrypsin/Hap YP_001771215.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: mex:Mext_1430 peptidase S1 and S6 chymotrypsin/Hap YP_001771216.1 PFAM: DoxX family protein; KEGG: xau:Xaut_0302 DoxX family protein YP_001771217.1 KEGG: mex:Mext_0436 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: histidine kinase dimerisation/phosphoacceptor; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001771218.1 PFAM: Fe-S metabolism associated SufE; KEGG: bbt:BBta_5927 SufE protein probably involved in Fe-S center assembly YP_001771219.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: mex:Mext_0431 oligopeptidase B YP_001771220.1 PFAM: regulatory protein ArsR; Helix-turn-helix type 11 domain protein; KEGG: aav:Aave_2096 transcriptional regulator, ArsR family YP_001771222.1 KEGG: mex:Mext_4567 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller YP_001771223.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: mex:Mext_2243 single-strand binding protein YP_001771224.1 PFAM: alpha/beta hydrolase fold; KEGG: mex:Mext_3841 alpha/beta hydrolase fold YP_001771225.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mex:Mext_3329 ErfK/YbiS/YcfS/YnhG family protein YP_001771226.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mex:Mext_2558 ErfK/YbiS/YcfS/YnhG family protein YP_001771228.1 KEGG: mex:Mext_2556 hypothetical protein YP_001771229.1 KEGG: mex:Mext_0308 hypothetical protein YP_001771230.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: mex:Mext_2244 alcohol dehydrogenase zinc-binding domain protein YP_001771231.1 KEGG: mex:Mext_2245 conserved hypothetical protein; putative secreted protein YP_001771232.1 KEGG: mex:Mext_2246 hypothetical protein YP_001771233.1 KEGG: mex:Mext_2247 hypothetical protein YP_001771234.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_001771235.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: mex:Mext_4570 peptidyl-prolyl cis-trans isomerase cyclophilin type YP_001771236.1 KEGG: mex:Mext_4571 hypothetical protein YP_001771237.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: mex:Mext_4572 peptidyl-prolyl cis-trans isomerase cyclophilin type YP_001771238.1 PFAM: peptidase S16 lon domain protein; KEGG: mex:Mext_2252 peptidase S16 lon domain protein YP_001771239.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: mex:Mext_2251 thioredoxin domain YP_001771240.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_2624 ABC transporter related YP_001771241.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: mex:Mext_0973 cysteine synthase A YP_001771242.1 KEGG: mex:Mext_3031 hypothetical protein YP_001771245.1 PFAM: oxidoreductase molybdopterin binding; KEGG: mex:Mext_2124 oxidoreductase molybdopterin binding YP_001771246.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: mex:Mext_2125 oxidoreductase FAD-binding domain protein YP_001771247.1 PFAM: FAD linked oxidase domain protein; KEGG: mex:Mext_0214 FAD linked oxidase domain protein YP_001771248.1 KEGG: mex:Mext_1311 putative ABC-type Co2+ transport system, periplasmic component YP_001771249.1 PFAM: regulatory protein LuxR; KEGG: pol:Bpro_1379 transcriptional regulator, LuxR family YP_001771250.1 PFAM: Polynucleotide adenylyltransferase region; KEGG: mex:Mext_1464 polynucleotide adenylyltransferase region YP_001771251.1 KEGG: mex:Mext_1463 hypothetical protein YP_001771252.1 PFAM: NUDIX hydrolase; KEGG: mex:Mext_1462 NUDIX hydrolase YP_001771253.1 PFAM: protein of unknown function DUF1285; KEGG: mex:Mext_1461 protein of unknown function DUF1285 YP_001771254.1 PFAM: thioesterase superfamily protein; KEGG: mex:Mext_1460 thioesterase superfamily protein YP_001771255.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: mex:Mext_1459 ATPase associated with various cellular activities AAA_3 YP_001771256.1 PFAM: protein of unknown function DUF58; KEGG: mex:Mext_1458 protein of unknown function DUF58 YP_001771257.1 TIGRFAM: conserved hypothetical membrane protein; KEGG: mex:Mext_1457 hypothetical protein YP_001771258.1 KEGG: mex:Mext_1456 hypothetical protein YP_001771259.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mex:Mext_0345 GCN5-related N-acetyltransferase YP_001771260.1 PFAM: extracellular solute-binding protein family 3; KEGG: mlo:mll6987 ABC transporter, periplasmic binding-protein YP_001771261.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH02141 octopine ABC transporter, permease protein YP_001771262.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH02140 octopine ABC transporter, permease protein YP_001771263.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oan:Oant_3521 ABC transporter related YP_001771264.1 TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: bbt:BBta_3301 D-methionine ABC transporter protein, periplasmic binding protein YP_001771265.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bra:BRADO4287 D-and L-methionine ABC transporter, permease protein YP_001771266.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_3225 ABC transporter related YP_001771267.1 KEGG: rru:Rru_A1207 exopolyphosphatase-related protein YP_001771268.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpd:RPD_2925 GGDEF domain YP_001771269.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mex:Mext_2307 alcohol dehydrogenase GroES domain protein YP_001771270.1 KEGG: mex:Mext_2308 hypothetical protein YP_001771271.1 KEGG: mex:Mext_4576 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein YP_001771272.1 KEGG: mex:Mext_4575 hypothetical protein YP_001771273.1 KEGG: mex:Mext_4574 hypothetical protein YP_001771275.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mex:Mext_4462 RNA polymerase sigma factor, sigma-70 family YP_001771276.1 PFAM: CsbD family protein; KEGG: mex:Mext_2136 CsbD family protein YP_001771277.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: mex:Mext_3326 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family YP_001771278.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mex:Mext_3327 efflux transporter, RND family, MFP subunit YP_001771280.1 PFAM: protein of unknown function DUF849; KEGG: azc:AZC_2881 prokaryotic protein of unknown function YP_001771281.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: xau:Xaut_4290 3-hydroxyacyl-CoA dehydrogenase NAD-binding YP_001771282.1 KEGG: afw:Anae109_3868 ABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein YP_001771283.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dar:Daro_2152 binding-protein-dependent transport systems inner membrane component YP_001771284.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_1260 ABC transporter related YP_001771285.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_001771286.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbt:BBta_6129 putative transcriptional regulatory protein, LysR family YP_001771287.1 PFAM: DoxX family protein; KEGG: mex:Mext_4059 DoxX family protein YP_001771288.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mex:Mext_4060 glyoxalase/bleomycin resistance protein/dioxygenase YP_001771289.1 KEGG: gdi:GDI1146 hypothetical protein YP_001771291.1 KEGG: mex:Mext_0842 hypothetical protein YP_001771292.1 KEGG: mex:Mext_1402 hypothetical protein YP_001771294.1 PFAM: Sporulation domain protein; Lytic transglycosylase catalytic; KEGG: mex:Mext_1931 lytic transglycosylase catalytic YP_001771295.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_1933 ABC transporter related YP_001771296.1 KEGG: mex:Mext_1934 phosphopentomutase; TIGRFAM: phosphopentomutase; PFAM: metalloenzyme domain protein; Phosphopentomutase domain protein YP_001771297.1 PFAM: cytochrome P450; KEGG: gdi:GDI2592 putative cytochrome P450 YP_001771298.1 PFAM: regulatory protein TetR; KEGG: mex:Mext_2708 regulatory protein TetR YP_001771299.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_001771300.1 PFAM: acyltransferase 3; KEGG: psa:PST_4158 sugar acetylase YP_001771301.1 TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: mex:Mext_2915 ribonuclease D YP_001771302.1 PFAM: type IV pilus assembly PilZ; KEGG: rpc:RPC_1549 type IV pilus assembly PilZ YP_001771303.1 KEGG: mex:Mext_0658 tRNA (guanine-N1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase YP_001771304.1 PFAM: type IV pilus assembly PilZ; KEGG: mex:Mext_4321 type IV pilus assembly PilZ YP_001771305.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: rpa:RPA1994 hypothetical protein YP_001771306.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_001771307.1 PFAM: GCN5-related N-acetyltransferase; KEGG: reu:Reut_A1932 GCN5-related N-acetyltransferase YP_001771308.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_001771309.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: mex:Mext_0733 uroporphyrinogen III synthase HEM4 YP_001771310.1 KEGG: mex:Mext_0734 hypothetical protein YP_001771311.1 PFAM: HemY domain protein; Tetratricopeptide TPR_4; KEGG: mex:Mext_0735 HemY domain protein YP_001771312.1 KEGG: mex:Mext_2642 hypothetical protein YP_001771313.1 PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: mex:Mext_2641 ethyl tert-butyl ether degradation EthD YP_001771314.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: mex:Mext_2640 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001771315.1 PFAM: protein of unknown function DUF938; KEGG: sal:Sala_1866 protein of unknown function DUF938 YP_001771316.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: mex:Mext_2677 mandelate racemase/muconate lactonizing protein YP_001771317.1 PFAM: protein of unknown function DUF1611; KEGG: mex:Mext_2676 protein of unknown function DUF1611 YP_001771318.1 PFAM: extracellular solute-binding protein family 3; KEGG: mex:Mext_3961 extracellular solute-binding protein family 3 YP_001771319.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_3962 polar amino acid ABC transporter, inner membrane subunit YP_001771320.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_3963 polar amino acid ABC transporter, inner membrane subunit YP_001771321.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_3964 ABC transporter related YP_001771322.1 KEGG: mex:Mext_2100 hypothetical protein YP_001771323.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: gdi:GDI0659 transcriptional regulator, LysR family YP_001771324.1 PFAM: conserved hypothetical protein; KEGG: oan:Oant_0027 conserved hypothetical protein 698 YP_001771325.1 PFAM: protein of unknown function UPF0005; KEGG: rle:pRL110005 putative transmembrane protein YP_001771326.1 KEGG: mex:Mext_1375 hypothetical protein YP_001771327.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; possibly involved in prevention of copper toxicity YP_001771328.1 KEGG: mex:Mext_1754 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_001771329.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: smd:Smed_3064 lysine exporter protein (LysE/YggA) YP_001771330.1 KEGG: mex:Mext_1660 hypothetical protein YP_001771331.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: mex:Mext_1640 radical SAM enzyme, Cfr family YP_001771332.1 KEGG: mex:Mext_3291 hypothetical protein YP_001771333.1 PFAM: aminoglycoside phosphotransferase; KEGG: rso:RSc2016 hypothetical protein YP_001771335.1 PFAM: regulatory protein MarR; KEGG: mex:Mext_0844 regulatory protein MarR YP_001771336.1 PFAM: Creatininase; KEGG: mex:Mext_2133 creatininase YP_001771337.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: mex:Mext_1778 cobalamin synthesis protein P47K YP_001771338.1 KEGG: mex:Mext_4421 hypothetical protein YP_001771339.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bra:BRADO3435 putative transcriptional regulatory protein, Crp/Fnr family YP_001771341.1 KEGG: mex:Mext_2141 hypothetical protein YP_001771342.1 KEGG: mex:Mext_4535 hypothetical protein YP_001771344.1 KEGG: mex:Mext_4533 phosphoenolpyruvate carboxylase YP_001771345.1 catalyzes the formation of glutamate from glutamine YP_001771347.1 PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: xau:Xaut_1141 glutamate--ammonia ligase YP_001771348.1 PFAM: ribonuclease BN; KEGG: mex:Mext_2230 ribonuclease BN YP_001771349.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: mex:Mext_2229 protein of unknown function DUF6 transmembrane YP_001771350.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: mex:Mext_2228 acyl-CoA dehydrogenase domain protein YP_001771351.1 PFAM: BLUF domain protein; KEGG: rpa:RPA4282 possible activator of photopigment and puc with BLUF domain YP_001771352.1 KEGG: bja:bll5864 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; SMART: PAS domain containing protein YP_001771353.1 Synthesizes thioester adducts of fatty acids enzymatically to the phosphopantetheine group of acyl carrier protein YP_001771354.1 PFAM: YiaAB two helix domain protein; KEGG: mex:Mext_2956 YiaAB two helix domain protein YP_001771355.1 PFAM: PspA/IM30 family protein; KEGG: mex:Mext_2957 PspA/IM30 family protein YP_001771356.1 PFAM: regulatory protein TetR; KEGG: bja:blr7614 transcriptional regulatory protein YP_001771357.1 KEGG: bja:blr2101 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase YP_001771359.1 PFAM: dienelactone hydrolase; KEGG: mlo:mlr4903 hypothetical protein YP_001771360.1 PFAM: acyltransferase 3; KEGG: fal:FRAAL4780 putative membrane-bound acyl-transferase YP_001771361.1 KEGG: mex:Mext_4396 hypothetical protein YP_001771362.1 PFAM: protein of unknown function DUF1236; KEGG: mex:Mext_0452 protein of unknown function DUF1236 YP_001771363.1 KEGG: mex:Mext_2646 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_001771364.1 KEGG: mex:Mext_2645 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001771365.1 KEGG: mex:Mext_2644 quinolinate synthetase complex, A subunit; TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A YP_001771366.1 KEGG: mex:Mext_4472 hypothetical protein YP_001771367.1 PFAM: protein of unknown function DUF482; KEGG: mex:Mext_4316 protein of unknown function DUF482 YP_001771368.1 KEGG: mex:Mext_1970 hypothetical protein YP_001771369.1 KEGG: bra:BRADO3425 hypothetical protein YP_001771371.1 KEGG: rpb:RPB_1673 hypothetical protein YP_001771372.1 PFAM: cyclic nucleotide-binding; Patatin; KEGG: ccr:CC_2171 hypothetical protein YP_001771373.1 PFAM: cytochrome P450; KEGG: mex:Mext_4000 cytochrome P450 YP_001771374.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mxa:MXAN_4126 ferredoxin reductase YP_001771375.1 KEGG: mex:Mext_4002 ferredoxin protein YP_001771376.1 KEGG: bxe:Bxe_A3010 putative glutathione S-transferase domain protein YP_001771377.1 KEGG: mex:Mext_3248 hypothetical protein YP_001771378.1 KEGG: mex:Mext_3249 hypothetical protein YP_001771379.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: mex:Mext_3250 phosphoesterase PA-phosphatase related YP_001771380.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: azc:AZC_0802 enoyl-CoA hydratase YP_001771381.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: bxe:Bxe_A0886 serine/threonine dehydratase YP_001771382.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: rle:RL4572 hypothetical protein YP_001771383.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: rpa:RPA1895 possible peptidase YP_001771384.1 PFAM: carbonic anhydrase; KEGG: mex:Mext_2827 carbonate dehydratase YP_001771385.1 forms a direct contact with the tRNA during translation YP_001771386.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_001771387.1 PFAM: thioesterase superfamily protein; KEGG: mex:Mext_2490 thioesterase superfamily protein YP_001771388.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mex:Mext_4436 enoyl-CoA hydratase/isomerase YP_001771389.1 KEGG: mex:Mext_2489 CoA-binding domain protein YP_001771390.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: nha:Nham_3524 magnesium transporter YP_001771391.1 PFAM: protein of unknown function DUF1452; KEGG: mex:Mext_1887 protein of unknown function DUF1452 YP_001771392.1 PFAM: Amidase; KEGG: pol:Bpro_1387 amidase YP_001771393.1 PFAM: extracellular solute-binding protein family 5; KEGG: mex:Mext_1277 extracellular solute-binding protein family 5 YP_001771394.1 PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: acr:Acry_2598 2-keto-3-deoxy-galactonokinase YP_001771395.1 PFAM: KDPG and KHG aldolase; KEGG: acr:Acry_2597 KDPG and KHG aldolase YP_001771396.1 TIGRFAM: phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related; KEGG: bja:bll6631 probable phosphatidylserine decarboxylase proenzyme YP_001771397.1 PFAM: aminotransferase class-III; KEGG: bja:blr6632 hypothetical protein YP_001771398.1 KEGG: csa:Csal_0281 hypothetical protein YP_001771400.1 PFAM: lipolytic protein G-D-S-L family; KEGG: pla:Plav_1957 protein of unknown function DUF459 YP_001771401.1 KEGG: swi:Swit_3459 hypothetical protein YP_001771402.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: pla:Plav_1959 membrane bound O-acyl transferase MBOAT family protein YP_001771404.1 KEGG: mex:Mext_4259 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001771405.1 PFAM: Aldose 1-epimerase; KEGG: ccr:CC_1418 aldose 1-epimerase YP_001771406.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bja:blr3205 dehydrogenase YP_001771407.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: bbt:BBta_2136 putative gluconolactonase YP_001771408.1 KEGG: mex:Mext_0450 hypothetical protein YP_001771409.1 PFAM: regulatory protein MarR; transcriptional regulator PadR family protein; KEGG: mex:Mext_0133 regulatory protein MarR YP_001771410.1 PFAM: regulatory protein LuxR; KEGG: mex:Mext_1995 regulatory protein LuxR YP_001771411.1 KEGG: mex:Mext_3953 hypothetical protein YP_001771412.1 KEGG: mex:Mext_0731 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein YP_001771413.1 KEGG: bja:bll4882 hypothetical protein YP_001771414.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dar:Daro_1834 TonB-dependent siderophore receptor YP_001771415.1 PFAM: protein of unknown function DUF849; KEGG: acr:Acry_2778 protein of unknown function DUF849 YP_001771416.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: vei:Veis_4703 3-hydroxyacyl-CoA dehydrogenase, NAD-binding YP_001771417.1 PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: xau:Xaut_0428 ABC transporter related YP_001771418.1 PFAM: inner-membrane translocator; KEGG: xau:Xaut_0429 inner-membrane translocator YP_001771419.1 PFAM: Extracellular ligand-binding receptor; KEGG: xau:Xaut_0430 extracellular ligand-binding receptor YP_001771420.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: xau:Xaut_0431 transcriptional regulator, GntR family YP_001771421.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xau:Xaut_0432 short-chain dehydrogenase/reductase SDR YP_001771422.1 PFAM: Ankyrin; KEGG: mex:Mext_4065 ankyrin YP_001771423.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate YP_001771424.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: ppf:Pput_3124 regulatory protein, IclR YP_001771425.1 TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: bja:blr2333 protocatechuate 3,4-dioxygenase beta chain YP_001771426.1 KEGG: kpn:KPN_01949 intradiol ring-cleavage dioxygenase; TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase YP_001771427.1 PFAM: protein of unknown function DUF849; KEGG: mex:Mext_1354 protein of unknown function DUF849 YP_001771428.1 PFAM: fumarate lyase; KEGG: pap:PSPA7_0316 3-carboxy-cis,cis-muconate cycloisomerase YP_001771429.1 TIGRFAM: 4-carboxymuconolactone decarboxylase; 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; Carboxymuconolactone decarboxylase; KEGG: reh:H16_B2288 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase YP_001771430.1 KEGG: azc:AZC_1921 putative large exoprotein YP_001771431.1 KEGG: bra:BRADO5968 putative haemagglutinin-like (or adhesin-like) with a signal peptide YP_001771432.1 KEGG: mex:Mext_1767 hypothetical protein YP_001771433.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: rpe:RPE_1377 transcriptional regulator, DeoR family YP_001771434.1 PFAM: Ferritin Dps family protein; KEGG: mex:Mext_4770 ferritin Dps family protein YP_001771435.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: mex:Mext_4769 peptidoglycan-binding domain 1 protein YP_001771436.1 KEGG: mex:Mext_3386 hypothetical protein YP_001771437.1 KEGG: mex:Mext_4317 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_001771438.1 PFAM: histidine triad (HIT) protein; KEGG: mex:Mext_4320 histidine triad (HIT) protein YP_001771439.1 KEGG: mex:Mext_0649 hypothetical protein YP_001771440.1 PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mex:Mext_4450 DEAD/DEAH box helicase domain protein YP_001771441.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: hne:HNE_2698 NAD-dependent epimerase/dehydratase family protein YP_001771443.1 SMART: serine/threonine protein kinase; leucine-rich repeat-containing protein typical subtype; KEGG: mex:Mext_3080 serine/threonine protein kinase YP_001771444.1 KEGG: bra:BRADO5461 hypothetical protein YP_001771447.1 PFAM: gamma-glutamyltranspeptidase; KEGG: bpt:Bpet3220 ggt3 YP_001771448.1 PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: bpt:Bpet1254 hypothetical protein YP_001771449.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: azc:AZC_2999 amidohydrolase YP_001771450.1 PFAM: isochorismatase hydrolase; KEGG: rrs:RoseRS_0048 isochorismatase hydrolase YP_001771451.1 PFAM: regulatory protein TetR; KEGG: rru:Rru_A3418 transcriptional regulator, TetR family YP_001771452.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bra:BRADO1540 putative ABC transporter (permease protein) YP_001771453.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bra:BRADO1541 putative ABC transporter (ATP-binding protein) YP_001771454.1 PFAM: extracellular solute-binding protein family 1; KEGG: bra:BRADO1542 putative ABC transporter (substrate binding protein) YP_001771455.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bra:BRADO1543 putative ABC transporter (permease protein) YP_001771456.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bra:BRADO1544 amidohydrolase family enzyme, putative imidazolonepropionase YP_001771457.1 PFAM: cobalamin synthesis protein P47K; KEGG: bra:BRADO1545 putative cobalamin synthesis protein CobW YP_001771462.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mex:Mext_0458 RNA polymerase sigma factor, sigma-70 family YP_001771463.1 KEGG: mex:Mext_4254 hypothetical protein YP_001771464.1 KEGG: azc:AZC_1026 methyl-accepting chemotaxis receptor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein YP_001771465.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: drm:Dred_1895 NAD-dependent epimerase/dehydratase YP_001771466.1 KEGG: nha:Nham_3895 putative transposase YP_001771467.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bam:Bamb_4305 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase YP_001771468.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: rpd:RPD_2367 5-oxoprolinase (ATP-hydrolyzing) YP_001771469.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: rpd:RPD_2368 5-oxoprolinase (ATP-hydrolyzing) YP_001771470.1 PFAM: Extracellular ligand-binding receptor; KEGG: mex:Mext_2534 extracellular ligand-binding receptor YP_001771471.1 PFAM: Integrase catalytic region; KEGG: swi:Swit_5106 integrase, catalytic region YP_001771472.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: ret:RHE_PA00078 putative insertion sequence ATP-binding protein, IS21 family YP_001771473.1 KEGG: fal:FRAAL4621 putative transposase YP_001771474.1 PFAM: protein of unknown function DUF985; KEGG: sco:SCO4051 hypothetical protein YP_001771475.1 PFAM: protein of unknown function DUF1458; KEGG: rxy:Rxyl_1669 protein of unknown function DUF1458 YP_001771477.1 PFAM: transposase IS3/IS911 family protein; KEGG: mex:Mext_3547 transposase IS3/IS911 family protein YP_001771478.1 KEGG: nha:Nham_4212 integrase, catalytic region YP_001771479.1 KEGG: mex:Mext_0438 hypothetical protein YP_001771480.1 TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: mex:Mext_4205 polyhydroxyalkanoate depolymerase, intracellular YP_001771481.1 KEGG: mex:Mext_0018 ATP-binding region ATPase domain protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein YP_001771482.1 KEGG: mex:Mext_0019 non-specific serine/threonine protein kinase; PFAM: KaiA binding; SMART: AAA ATPase YP_001771484.1 KEGG: bja:bll4765 hypothetical protein YP_001771485.1 PFAM: periplasmic binding protein; KEGG: mex:Mext_2668 periplasmic binding protein YP_001771486.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine YP_001771490.1 KEGG: mex:Mext_3583 hypothetical protein YP_001771495.1 KEGG: cbe:Cbei_4385 putative cell wall binding repeat-containing protein YP_001771496.1 PFAM: ROSMUCR transcriptional regulator; KEGG: ccr:CC_0949 transcriptional regulator YP_001771497.1 KEGG: mex:Mext_3525 hypothetical protein YP_001771498.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: rsp:RSP_2676 hypothetical protein YP_001771499.1 KEGG: mlo:mlr2180 hypothetical protein YP_001771500.1 PFAM: short chain fatty acid transporter; KEGG: mex:Mext_2348 short chain fatty acid transporter YP_001771502.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bra:BRADO2547 putative ABC transporter ATP-binding protein YP_001771503.1 KEGG: bja:blr5574 ABC transporter substrate-binding protein YP_001771504.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B1360 ABC spermidine/putrescine transporter, inner membrane subunit YP_001771505.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1008 binding-protein-dependent transport systems inner membrane component YP_001771506.1 KEGG: mex:Mext_0871 hypothetical protein YP_001771507.1 KEGG: mex:Mext_0239 TRAP-type uncharacterized transport system periplasmic component-like protein YP_001771508.1 KEGG: mex:Mext_0959 ubiquinone biosynthesis O-methyltransferase; TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12 YP_001771509.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: dac:Daci_0235 glycerophosphoryl diester phosphodiesterase YP_001771510.1 KEGG: mex:Mext_0958 aspartate kinase; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein YP_001771511.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; GAF domain protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: mex:Mext_0957 phosphoenolpyruvate-protein phosphotransferase YP_001771512.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_001771513.1 TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; Methyltransferase type 11; KEGG: mex:Mext_0954 protein-(glutamine-N5) methyltransferase, release factor-specific YP_001771514.1 KEGG: mex:Mext_0953 hypothetical protein YP_001771515.1 catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids YP_001771516.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bra:BRADO5599 putative transcriptional regulatory protein, LysR family YP_001771517.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_001771518.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bja:bll5462 hypothetical metabolite transport protein YP_001771519.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: azc:AZC_1454 putative 4-hydroxyphenylpyruvate dioxygenase protein YP_001771520.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_001771521.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pol:Bpro_3342 short-chain dehydrogenase/reductase SDR YP_001771522.1 KEGG: smd:Smed_2449 cupin 2 conserved barrel domain protein YP_001771523.1 PFAM: Extracellular ligand-binding receptor; KEGG: rpa:RPA1741 possible branched-chain amino acid transport system substrate-binding protein YP_001771524.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: nar:Saro_2477 transcriptional regulator, LysR family YP_001771525.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: amr:AM1_0254 DUF6 domain transmembrane protein YP_001771526.1 PFAM: Extracellular ligand-binding receptor; KEGG: rpa:RPA1741 possible branched-chain amino acid transport system substrate-binding protein YP_001771527.1 PFAM: inner-membrane translocator; KEGG: bja:blr6443 ABC transporter permease protein YP_001771528.1 PFAM: inner-membrane translocator; KEGG: bja:blr6444 ABC transporter permease protein YP_001771529.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbt:BBta_4092 putative ABC transporter (ATP-binding protein) YP_001771530.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_001771531.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pae:PA1885 hypothetical protein YP_001771532.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: bam:Bamb_1025 transcriptional regulator, XRE family YP_001771533.1 KEGG: rpe:RPE_0842 hypothetical protein YP_001771534.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: mex:Mext_3061 sigma-54 factor interaction domain-containing protein YP_001771535.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mex:Mext_3060 ATP-binding region ATPase domain protein YP_001771536.1 PFAM: sodium:dicarboxylate symporter; KEGG: mex:Mext_3059 sodium:dicarboxylate symporter YP_001771537.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: xau:Xaut_0183 acyl-CoA dehydrogenase domain protein YP_001771538.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bja:blr4511 probable ABC transporter substrate-binding protein YP_001771540.1 KEGG: mex:Mext_2297 hypothetical protein YP_001771541.1 KEGG: mex:Mext_2298 ribose 5-phosphate isomerase; TIGRFAM: ribose 5-phosphate isomerase; PFAM: Ribose 5-phosphate isomerase YP_001771542.1 KEGG: mex:Mext_2299 hypothetical protein YP_001771543.1 PFAM: O-antigen polymerase; KEGG: mex:Mext_2300 O-antigen polymerase YP_001771544.1 TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: mex:Mext_2301 pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_001771545.1 KEGG: bja:bll6165 hypothetical protein YP_001771546.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space YP_001771547.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: xau:Xaut_2316 alcohol dehydrogenase zinc-binding domain protein YP_001771548.1 KEGG: xau:Xaut_2315 hypothetical protein YP_001771549.1 PFAM: glycosyl transferase group 1; KEGG: azc:AZC_4168 putative glycosyltransferase YP_001771550.1 KEGG: azc:AZC_4169 hypothetical protein YP_001771551.1 KEGG: xau:Xaut_0977 putative transmembrane anti-sigma factor YP_001771552.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: xau:Xaut_0976 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001771554.1 PFAM: blue (type 1) copper domain protein; KEGG: nha:Nham_2673 blue (type 1) copper domain YP_001771555.1 PFAM: metallophosphoesterase; KEGG: xau:Xaut_0974 metallophosphoesterase YP_001771556.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: mex:Mext_1729 molybdopterin dehydrogenase FAD-binding YP_001771557.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: mex:Mext_1728 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding YP_001771558.1 PFAM: protein of unknown function DUF949; KEGG: mex:Mext_4733 protein of unknown function DUF949 YP_001771559.1 KEGG: mex:Mext_4732 hypothetical protein YP_001771560.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_001771561.1 PFAM: Patatin; KEGG: nha:Nham_3555 patatin YP_001771562.1 TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mex:Mext_4730 3-hydroxybutyrate dehydrogenase YP_001771563.1 PFAM: Amidase; KEGG: mex:Mext_0916 amidase YP_001771565.1 KEGG: mex:Mext_4395 hypothetical protein YP_001771566.1 PFAM: helicase domain protein; KEGG: mex:Mext_4394 helicase domain protein YP_001771567.1 PFAM: RNA-binding S4 domain protein; KEGG: mex:Mext_4393 RNA-binding S4 domain protein YP_001771568.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mex:Mext_3879 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_001771569.1 PFAM: transcription factor CarD; KEGG: mex:Mext_3880 transcription factor CarD YP_001771570.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma-32 is responsible for the expression of heat shock promoters; there are paralogs in Rhizobium and Sinorhizobium; the proteins in this cluster act as secondary heat shock sigma factors; the Rhizobium sigma-32 factor may also be involved in exopolysaccharide production YP_001771571.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: xau:Xaut_2457 4'-phosphopantetheinyl transferase YP_001771572.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mex:Mext_3526 LysR substrate-binding YP_001771573.1 KEGG: mex:Mext_0314 arginine biosynthesis bifunctional protein ArgJ; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ YP_001771574.1 PFAM: protein of unknown function DUF541; KEGG: mex:Mext_0313 protein of unknown function DUF541 YP_001771575.1 PFAM: NUDIX hydrolase; KEGG: mex:Mext_0312 mutator MutT protein YP_001771576.1 PFAM: protein of unknown function DUF427; KEGG: rpa:RPA1599 hypothetical protein YP_001771577.1 PFAM: Methyltransferase type 11; KEGG: mex:Mext_0309 methyltransferase type 11 YP_001771578.1 PFAM: phosphoribosyltransferase; KEGG: mex:Mext_0307 competence protein F YP_001771579.1 catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide YP_001771580.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_1146 nitrate ABC transporter, ATPase subunits C and D YP_001771581.1 TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_1147 nitrate ABC transporter, inner membrane subunit YP_001771582.1 KEGG: mex:Mext_1148 ABC transporter nitrate-binding protein YP_001771583.1 KEGG: mex:Mext_2770 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; AAA ATPase YP_001771584.1 KEGG: rpb:RPB_0305 putative acyl-CoA dehydrogenase YP_001771585.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: scl:sce3254 putative short-chain dehydrogenase YP_001771586.1 KEGG: mex:Mext_0545 glucose-6-phosphate 1-dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase YP_001771587.1 TIGRFAM: methyltransferase FkbM family; KEGG: fal:FRAAL2042 hypothetical protein YP_001771588.1 PFAM: Invasion associated locus B family protein; KEGG: mex:Mext_3054 invasion associated locus B family protein YP_001771589.1 PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_0306 major facilitator superfamily MFS_1 YP_001771590.1 PFAM: Glutathione S-transferase domain; KEGG: scl:sce6741 hypothetical protein YP_001771591.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_001771592.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_001771593.1 PFAM: protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein; KEGG: rxy:Rxyl_1265 transcriptional regulator, XRE family with cupin sensor YP_001771594.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: azc:AZC_2788 putative metabolite transport protein YP_001771595.1 KEGG: mms:mma_0888 hypothetical protein YP_001771596.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: mms:mma_0889 ferredoxin/oxidoreductase FAD/NAD(P)-binding YP_001771597.1 KEGG: mex:Mext_0881 hypothetical protein YP_001771598.1 PFAM: MCP methyltransferase CheR-type; KEGG: mex:Mext_1533 protein-glutamate O-methyltransferase YP_001771599.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: mex:Mext_1532 protein-glutamate methylesterase YP_001771600.1 PFAM: response regulator receiver; KEGG: rpb:RPB_3918 response regulator receiver domain protein YP_001771601.1 PFAM: CheW domain protein; KEGG: mex:Mext_1530 CheW domain protein YP_001771602.1 PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: mex:Mext_1529 ATP-binding region ATPase domain protein YP_001771603.1 KEGG: mex:Mext_1528 hypothetical protein YP_001771604.1 PFAM: inositol monophosphatase; KEGG: mex:Mext_1527 inositol monophosphatase YP_001771605.1 KEGG: rpb:RPB_3923 hypothetical protein YP_001771606.1 PFAM: conserved hypothetical protein; KEGG: mex:Mext_1791 hypothetical protein YP_001771607.1 KEGG: mex:Mext_1790 hypothetical protein YP_001771608.1 KEGG: mex:Mext_1789 hypothetical protein YP_001771609.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mlo:mll8067 two-component sensor histidine kinase YP_001771611.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mex:Mext_1787 diaminopimelate decarboxylase YP_001771612.1 KEGG: mex:Mext_1537 hypothetical protein YP_001771613.1 PFAM: Hypoxia induced protein conserved region; KEGG: mex:Mext_1538 hypoxia induced protein conserved region YP_001771614.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; KEGG: mex:Mext_4182 histidine kinase dimerisation/phosphoacceptor YP_001771616.1 PFAM: protein of unknown function UPF0118; KEGG: mex:Mext_4551 protein of unknown function UPF0118 YP_001771617.1 Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides YP_001771618.1 PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: mex:Mext_4547 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ YP_001771619.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_001771620.1 FabF, beta-Ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP. YP_001771621.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mex:Mext_4544 short-chain dehydrogenase/reductase SDR YP_001771622.1 KEGG: mex:Mext_4543 SH3 type 3 domain protein YP_001771623.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mex:Mext_4541 alcohol dehydrogenase zinc-binding domain protein YP_001771624.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA YP_001771625.1 PFAM: protein of unknown function DUF1223; KEGG: rpd:RPD_0526 protein of unknown function DUF1223 YP_001771626.1 PFAM: regulatory protein MarR; KEGG: bxe:Bxe_A3581 transcriptional regulator, MarR family YP_001771627.1 PFAM: Fusaric acid resistance protein conserved region; KEGG: bra:BRADO4669 putative efflux transporter permease; putative fusaric acid resistance pump YP_001771628.1 PFAM: protein of unknown function DUF1656; KEGG: cvi:CV_2846 hypothetical protein YP_001771629.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bja:blr3854 hypothetical protein YP_001771630.1 PFAM: major facilitator superfamily MFS_1; KEGG: ccr:CC_2354 major facilitator family transporter YP_001771632.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: mex:Mext_4724 cobalamin biosynthesis protein CobD YP_001771633.1 TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; KEGG: mex:Mext_4725 L-threonine-O-3-phosphate decarboxylase YP_001771634.1 KEGG: mex:Mext_4085 capsule polysaccharide export protein-like protein YP_001771635.1 KEGG: mex:Mext_4086 hypothetical protein YP_001771636.1 KEGG: mex:Mext_3138 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_001771637.1 KEGG: mex:Mext_1649 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001771638.1 PFAM: ThiJ/PfpI domain protein; KEGG: azc:AZC_2741 DJ-1/PfpI family protein YP_001771639.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: azc:AZC_2740 transcriptional regulator YP_001771640.1 PFAM: glutamyl-tRNA synthetase class Ic; KEGG: mex:Mext_1025 glutamyl-tRNA synthetase class Ic YP_001771641.1 PFAM: HhH-GPD family protein; KEGG: bcs:BCAN_A1687 HhH-GPD family protein YP_001771642.1 PFAM: phospholipase/Carboxylesterase; KEGG: xau:Xaut_3842 phospholipase/carboxylesterase YP_001771643.1 PFAM: HpcH/HpaI aldolase; KEGG: rle:pRL110432 putative 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase YP_001771644.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_001771645.1 PFAM: glycosyl transferase family 2; KEGG: mex:Mext_0588 glycosyl transferase family 2 YP_001771646.1 PFAM: glycosyl transferase family 2; KEGG: mex:Mext_0589 glycosyl transferase family 2 YP_001771647.1 KEGG: mex:Mext_0590 hypothetical protein YP_001771648.1 PFAM: Invasion associated locus B family protein; KEGG: mex:Mext_0591 invasion associated locus B family protein YP_001771649.1 KEGG: mex:Mext_0592 hypothetical protein YP_001771650.1 PFAM: protein of unknown function DUF45; KEGG: mex:Mext_0593 protein of unknown function DUF45 YP_001771651.1 TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: mex:Mext_0594 polyhydroxyalkanoate depolymerase, intracellular YP_001771652.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mex:Mext_0595 ATP-binding region ATPase domain protein YP_001771653.1 PFAM: response regulator receiver; KEGG: mex:Mext_0596 response regulator receiver YP_001771654.1 PFAM: gamma-glutamyltranspeptidase; KEGG: mex:Mext_1030 gamma-glutamyltransferase YP_001771655.1 KEGG: mex:Mext_0597 putative exported protein of unknown function YP_001771656.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans YP_001771657.1 KEGG: mex:Mext_4506 hypothetical protein YP_001771658.1 KEGG: rsh:Rsph17029_4169 molybdenum ABC transporter, periplasmic molybdate-binding protein YP_001771659.1 KEGG: pap:PSPA7_5605 hypothetical protein YP_001771660.1 PFAM: oxidoreductase molybdopterin binding; KEGG: rso:RSc0620 hypothetical protein YP_001771661.1 KEGG: xau:Xaut_0968 hypothetical protein YP_001771662.1 KEGG: afw:Anae109_0338 hypothetical protein YP_001771663.1 PFAM: Radical SAM domain protein; KEGG: xau:Xaut_0967 radical SAM domain protein YP_001771664.1 PFAM: glycosyl transferase family 2; KEGG: xau:Xaut_0966 glycosyl transferase family 2 YP_001771665.1 PFAM: aminotransferase class I and II; KEGG: sme:SMc04326 putative aminotransferase protein YP_001771666.1 PFAM: aminotransferase class I and II; KEGG: mex:Mext_2582 aminotransferase class I and II YP_001771667.1 KEGG: mex:Mext_2583 hypothetical protein YP_001771668.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_001771669.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_001771670.1 KEGG: tfu:Tfu_1728 drug resistance transporter Bcr/CflA subfamily YP_001771671.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: mex:Mext_4034 cell divisionFtsK/SpoIIIE YP_001771672.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: mex:Mext_4033 outer membrane lipoprotein carrier protein LolA YP_001771673.1 TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mex:Mext_4030 exodeoxyribonuclease III Xth YP_001771674.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: azc:AZC_2273 transcriptional regulator YP_001771675.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bja:bll6360 putative bifunctional enzyme 2-hydroxyhepta-2,4-diene-1,7-dioatesomerase 5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioatedecarboxylase protein YP_001771676.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll6359 putative oxidoreductase protein YP_001771677.1 PFAM: major facilitator superfamily MFS_1; KEGG: azc:AZC_2268 putative MFS permease YP_001771678.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_001771679.1 KEGG: mex:Mext_4027 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein YP_001771680.1 KEGG: mex:Mext_4024 hypothetical protein YP_001771681.1 PFAM: Pathogenesis-related transcriptional factor and ERF protein; KEGG: atc:AGR_L_2371 hypothetical protein YP_001771683.1 PFAM: Transglycosylase-associated protein; KEGG: rpe:RPE_3640 transglycosylase-associated protein YP_001771684.1 PFAM: Endoribonuclease L-PSP; KEGG: xau:Xaut_2376 endoribonuclease L-PSP YP_001771685.1 PFAM: extracellular solute-binding protein family 1; KEGG: mex:Mext_4019 extracellular solute-binding protein family 1 YP_001771686.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: mex:Mext_4453 response regulator receiver YP_001771687.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: mex:Mext_0135 rare lipoprotein A YP_001771688.1 KEGG: mex:Mext_2468 hypothetical protein YP_001771690.1 KEGG: mex:Mext_3926 hypothetical protein YP_001771691.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: mex:Mext_4249 RarD protein, DMT superfamily transporter YP_001771692.1 KEGG: hal:VNG1060H hypothetical protein YP_001771693.1 PFAM: conserved hypothetical protein; KEGG: azc:AZC_2829 hypothetical protein YP_001771694.1 KEGG: mex:Mext_0889 hypothetical protein YP_001771695.1 PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_0890 major facilitator superfamily MFS_1 YP_001771696.1 PFAM: protein of unknown function DUF140; KEGG: mex:Mext_0891 protein of unknown function DUF140 YP_001771697.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_0892 ABC transporter related YP_001771698.1 PFAM: Mammalian cell entry related domain protein; KEGG: mex:Mext_0893 mammalian cell entry related domain protein YP_001771699.1 KEGG: mex:Mext_0894 protein of unknown function DUF330 YP_001771700.1 KEGG: mex:Mext_3511 hypothetical protein YP_001771701.1 PFAM: helix-turn-helix domain protein; CI repressor; Cupin 2 conserved barrel domain protein; KEGG: mex:Mext_4469 helix-turn-helix domain protein YP_001771702.1 KEGG: azc:AZC_1826 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1 YP_001771703.1 KEGG: mex:Mext_4471 thiamine-phosphate diphosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_001771704.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: eca:ECA4490 hypothetical protein YP_001771705.1 PFAM: metallophosphoesterase; KEGG: mex:Mext_1794 metallophosphoesterase YP_001771706.1 PFAM: glycosyl transferase group 1; KEGG: mex:Mext_1793 glycosyl transferase group 1 YP_001771707.1 PFAM: ROSMUCR transcriptional regulator; KEGG: mex:Mext_2834 ROSMUCR transcriptional regulator YP_001771708.1 KEGG: mex:Mext_3413 conserved hypothetical proteinn YP_001771710.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: mex:Mext_3094 sodium/hydrogen exchanger YP_001771711.1 KEGG: mex:Mext_4797 hypothetical protein YP_001771715.1 KEGG: ret:RHE_CH01976 hypothetical protein YP_001771716.1 PFAM: regulatory protein MarR YP_001771719.1 PFAM: Resolvase domain; KEGG: bja:bll5010 putative resolvase YP_001771721.1 PFAM: integrase family protein; KEGG: rme:Rmet_2561 phage integrase YP_001771722.1 KEGG: aeh:Mlg_2370 capsular polysaccharide biosynthesis protein-like protein YP_001771723.1 PFAM: Methyltransferase type 11; Methyltransferase type 12 YP_001771725.1 PFAM: protein of unknown function DUF1275; KEGG: mex:Mext_2335 protein of unknown function DUF1275 YP_001771727.1 KEGG: mex:Mext_3360 hypothetical protein YP_001771728.1 PFAM: cyclic nucleotide-binding; KEGG: mex:Mext_2120 cyclic nucleotide-binding YP_001771729.1 KEGG: gvi:glr1790 unknown protein YP_001771730.1 PFAM: glycosyl transferase family 2; KEGG: ace:Acel_1932 glycosyl transferase, family 2 YP_001771731.1 KEGG: bra:BRADO4751 conserved hypothetical protein; putative COG3206, uncharacterized protein involved in exopolysaccharide biosynthesis YP_001771732.1 TIGRFAM: glucose-1-phosphate cytidylyltransferase; KEGG: rsh:Rsph17029_0189 glucose-1-phosphate cytidylyltransferase YP_001771733.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: cau:Caur_1215 NAD-dependent epimerase/dehydratase YP_001771734.1 PFAM: glycosyl transferase group 1; KEGG: smd:Smed_4356 glycosyl transferase group 1 YP_001771735.1 KEGG: xau:Xaut_3565 polysaccharide biosynthesis protein YP_001771736.1 PFAM: Methyltransferase type 11; KEGG: lip:LIC104 NA YP_001771738.1 PFAM: polysaccharide deacetylase; KEGG: bja:bll6305 hypothetical protein YP_001771739.1 PFAM: aldo/keto reductase; KEGG: mex:Mext_2023 2,5-didehydrogluconate reductase YP_001771740.1 PFAM: acyltransferase 3; KEGG: bxe:Bxe_B0486 hypothetical protein YP_001771742.1 KEGG: rsp:RSP_3136 hypothetical protein YP_001771743.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: mlo:mll6762 two component system response regulator YP_001771745.1 KEGG: rsp:RSP_3136 hypothetical protein YP_001771746.1 PFAM: O-antigen polymerase YP_001771747.1 PFAM: glycosyl transferase group 1; Protein of unknown function DUF1972; KEGG: mes:Meso_2878 glycosyl transferase, group 1 YP_001771748.1 KEGG: sco:SCO0396 hypothetical protein YP_001771749.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; Methyltransferase domain protein; C-methyltransferase; KEGG: rpe:RPE_4255 C-methyltransferase YP_001771750.1 PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; KEGG: cau:Caur_1214 dTDP-4-dehydrorhamnose 3,5-epimerase YP_001771752.1 TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: bja:blr2358 probable glycosyl transferase YP_001771753.1 PFAM: regulatory protein Crp; KEGG: mex:Mext_3552 regulatory protein Crp YP_001771755.1 PFAM: regulatory protein MarR; KEGG: rpd:RPD_2769 regulatory protein, MarR YP_001771756.1 KEGG: rpd:RPD_2768 hypothetical protein YP_001771757.1 KEGG: rpd:RPD_2767 hypothetical protein YP_001771759.1 PFAM: cobalamin B12-binding domain protein; KEGG: mbu:Mbur_1602 Fe-S protein, radical SAM family YP_001771760.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: sil:SPO0323 hypothetical protein YP_001771761.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: azc:AZC_2706 AraC-family transcriptional regulator YP_001771762.1 PFAM: NUDIX hydrolase; KEGG: mex:Mext_3476 NUDIX hydrolase YP_001771763.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: mex:Mext_3475 fumarylacetoacetate (FAA) hydrolase YP_001771764.1 PFAM: FAD linked oxidase domain protein; KEGG: mex:Mext_3474 FAD linked oxidase domain protein YP_001771765.1 KEGG: mex:Mext_3113 hypothetical protein YP_001771766.1 KEGG: mex:Mext_1855 hypothetical protein YP_001771767.1 PFAM: pentapeptide repeat protein; KEGG: bja:blr6202 hypothetical protein YP_001771768.1 KEGG: mex:Mext_1852 hypothetical protein YP_001771769.1 PFAM: ABC-2 type transporter; KEGG: mex:Mext_1851 ABC-2 type transporter YP_001771770.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_1850 ABC transporter related YP_001771771.1 KEGG: mex:Mext_1849 hypothetical protein YP_001771772.1 KEGG: mex:Mext_1848 hypothetical protein YP_001771773.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: mex:Mext_1847 40-residue YVTN family beta-propeller repeat protein YP_001771774.1 KEGG: mex:Mext_1846 putative exported protein of unknown function YP_001771775.1 KEGG: mex:Mext_1845 hypothetical protein YP_001771776.1 PFAM: protein of unknown function DUF556; KEGG: mex:Mext_1844 hypothetical protein YP_001771777.1 PFAM: aspartate/glutamate/uridylate kinase; KEGG: mex:Mext_1843 aspartate/glutamate/uridylate kinase YP_001771778.1 PFAM: dihydropteroate synthase DHPS; KEGG: mex:Mext_1842 dihydropteroate synthase DhpS YP_001771779.1 KEGG: mex:Mext_1841 hypothetical protein YP_001771780.1 KEGG: mex:Mext_1839 conserved hypothetical protein; putative signal peptide YP_001771781.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: NHL repeat containing protein; KEGG: bja:bll4706 hypothetical protein YP_001771783.1 PFAM: luciferase family protein; KEGG: mex:Mext_3408 alkanesulfonate monooxygenase YP_001771785.1 KEGG: mex:Mext_1780 hypothetical protein YP_001771786.1 PFAM: glutathione peroxidase; KEGG: mex:Mext_3053 peroxiredoxin YP_001771788.1 PFAM: protein of unknown function DUF1348; KEGG: mlo:mll3526 hypothetical protein YP_001771789.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis YP_001771790.1 KEGG: mex:Mext_4476 hypothetical protein YP_001771791.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: bra:BRADO5906 conserved hypothetical protein with a putative signal peptide, a caspase-like domain (N-terminal) and a TolA-like domain (middle) YP_001771792.1 KEGG: bxe:Bxe_B0469 hypothetical protein YP_001771793.1 PFAM: protein of unknown function DUF323; peptidase C14 caspase catalytic subunit p20; KEGG: bxe:Bxe_B0467 hypothetical protein YP_001771794.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bbt:BBta_0052 putative peptidase M20 family YP_001771795.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: mex:Mext_4449 metal-dependent phosphohydrolase HD sub domain YP_001771796.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: xau:Xaut_0076 transcriptional regulator, BadM/Rrf2 family YP_001771797.1 KEGG: mex:Mext_1524 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase YP_001771798.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bmu:Bmul_2372 transcriptional regulator, GntR family YP_001771799.1 PFAM: major facilitator superfamily MFS_1; KEGG: rme:Rmet_1926 major facilitator superfamily MFS_1 YP_001771800.1 KEGG: azc:AZC_0476 hypothetical protein YP_001771801.1 KEGG: bja:blr0921 hypothetical protein YP_001771802.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_001771803.1 KEGG: dac:Daci_0564 L-asparaginase, type II; TIGRFAM: L-asparaginase, type II; PFAM: Asparaginase/glutaminase YP_001771804.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: mex:Mext_1978 diguanylate cyclase YP_001771805.1 PFAM: regulatory protein LuxR; KEGG: mex:Mext_1977 regulatory protein LuxR YP_001771806.1 KEGG: mex:Mext_1974 putative DNA topoisomerase I YP_001771807.1 PFAM: glycosyl transferase group 1; KEGG: mex:Mext_1973 glycosyl transferase group 1 YP_001771808.1 KEGG: mex:Mext_1972 hypothetical protein YP_001771809.1 PFAM: Patatin; KEGG: mex:Mext_1598 patatin YP_001771810.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_001771811.1 PFAM: K potassium transporter; KEGG: mex:Mext_1596 K potassium transporter YP_001771812.1 PFAM: protein of unknown function DUF1205; KEGG: bja:bll2692 putative glycosyltransferase YP_001771813.1 KEGG: pol:Bpro_4794 hypothetical protein YP_001771814.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pol:Bpro_4793 sigma-24 (FecI-like) YP_001771815.1 KEGG: ade:Adeh_3739 hypothetical protein YP_001771816.1 PFAM: protein of unknown function DUF1223; KEGG: bra:BRADO5149 conserved hypothetical protein; putative signal peptide YP_001771817.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_001771818.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: mex:Mext_1955 Sel1 domain protein repeat-containing protein YP_001771819.1 PFAM: Glutathione S-transferase domain; KEGG: sal:Sala_2088 glutathione S-transferase-like protein YP_001771820.1 KEGG: oan:Oant_3254 L-lysine 6-monooxygenase (NADPH) YP_001771821.1 PFAM: IucA/IucC family protein; KEGG: oan:Oant_3255 IucA/IucC family protein YP_001771822.1 KEGG: oan:Oant_3256 hypothetical protein YP_001771823.1 PFAM: IucA/IucC family protein; KEGG: oan:Oant_3257 IucA/IucC family protein YP_001771824.1 PFAM: major facilitator superfamily MFS_1; KEGG: oan:Oant_3258 major facilitator superfamily MFS_1 YP_001771825.1 TIGRFAM: siderophore transporter, RhtX/FptX family; PFAM: major facilitator superfamily MFS_1; KEGG: oan:Oant_3259 siderophore transporter RhtX/FptX family YP_001771827.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: azc:AZC_1327 transcriptional regulatory protein YP_001771828.1 KEGG: azc:AZC_0788 hypothetical protein; TIGRFAM: OHCU decarboxylase; urate catabolism protein; PFAM: polysaccharide deacetylase YP_001771829.1 PFAM: glycosyl transferase group 1; KEGG: mex:Mext_4511 glycosyl transferase group 1 YP_001771830.1 PFAM: Rhodanese domain protein; KEGG: mex:Mext_4510 rhodanese domain protein YP_001771831.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mex:Mext_4509 efflux transporter, RND family, MFP subunit YP_001771832.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: mex:Mext_4508 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family YP_001771833.1 KEGG: bja:blr3670 probable substrate-binding protein YP_001771834.1 KEGG: mex:Mext_3414 hypothetical protein YP_001771835.1 PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: mex:Mext_3415 transglutaminase domain protein YP_001771836.1 PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: mex:Mext_3416 protein of unknown function DUF404 YP_001771837.1 PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: mex:Mext_3417 transglutaminase domain protein YP_001771838.1 PFAM: protein of unknown function DUF1192; KEGG: bja:bsr1504 hypothetical protein YP_001771839.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_001771840.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: mex:Mext_2352 ribonuclease P protein component YP_001771841.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: mex:Mext_2351 60 kDa inner membrane insertion protein YP_001771842.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_001771843.1 PFAM: protein of unknown function DUF423; KEGG: mex:Mext_2349 protein of unknown function DUF423 YP_001771844.1 PFAM: metallophosphoesterase; KEGG: mex:Mext_2347 metallophosphoesterase YP_001771845.1 KEGG: mex:Mext_2346 ATP-dependent chaperone ClpB; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase YP_001771846.1 PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: mex:Mext_2344 MOSC domain containing protein YP_001771847.1 KEGG: mex:Mext_2343 hypothetical protein YP_001771848.1 KEGG: rpc:RPC_1488 hypothetical protein YP_001771849.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: reh:H16_A0806 nucleobase:cation symporter 2 (NCS2) family transporter YP_001771850.1 PFAM: dienelactone hydrolase; phospholipase/Carboxylesterase; BAAT/Acyl-CoA thioester hydrolase; KEGG: mex:Mext_0171 dienelactone hydrolase YP_001771851.1 PFAM: major facilitator superfamily MFS_1; KEGG: ppf:Pput_5023 major facilitator superfamily MFS_1 YP_001771852.1 PFAM: pyruvate carboxyltransferase; KEGG: pfo:Pfl_1315 pyruvate carboxyltransferase YP_001771853.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pfo:Pfl_1314 L-carnitine dehydratase/bile acid-inducible protein F YP_001771854.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpe:RPE_3611 methyl-accepting chemotaxis sensory transducer YP_001771855.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:Pfl_1313 transcriptional regulator, LysR family YP_001771856.1 KEGG: mex:Mext_3794 DoxX family protein YP_001771857.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: mex:Mext_3651 leucyl aminopeptidase YP_001771858.1 PFAM: permease YjgP/YjgQ family protein; KEGG: mex:Mext_3650 permease YjgP/YjgQ family protein YP_001771859.1 PFAM: permease YjgP/YjgQ family protein; KEGG: mex:Mext_3649 permease YjgP/YjgQ family protein YP_001771860.1 PFAM: Organic solvent tolerance protein; KEGG: mex:Mext_3648 organic solvent tolerance protein YP_001771861.1 KEGG: mex:Mext_3638 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA YP_001771862.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_001771863.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: mex:Mext_2254 import inner membrane translocase subunit Tim44 YP_001771864.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: mex:Mext_2255 PAS sensor protein YP_001771865.1 TIGRFAM: FeS assembly SUF system protein; PFAM: protein of unknown function DUF59; KEGG: mex:Mext_3981 FeS assembly SUF system protein YP_001771866.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mex:Mext_3980 cysteine desulfurase, SufS subfamily YP_001771867.1 TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: mex:Mext_3979 FeS assembly protein SufD YP_001771868.1 KEGG: mex:Mext_3978 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase YP_001771869.1 TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: mex:Mext_3977 FeS assembly protein SufB YP_001771870.1 PFAM: aminotransferase class V; KEGG: mex:Mext_3976 aminotransferase class V YP_001771871.1 KEGG: mex:Mext_3975 conserved hypothetical protein; putative alpha/beta hydrolase domain YP_001771872.1 PFAM: protein of unknown function DUF559; KEGG: rpc:RPC_1182 hypothetical protein YP_001771873.1 KEGG: rpc:RPC_1183 hypothetical protein YP_001771874.1 SMART: AAA ATPase; KEGG: rpc:RPC_1184 ATPase YP_001771875.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mex:Mext_4099 ATP-binding region ATPase domain protein YP_001771876.1 PFAM: SNARE associated Golgi protein; KEGG: mex:Mext_4098 SNARE associated Golgi protein YP_001771877.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mex:Mext_4097 phosphatidylethanolamine N-methyltransferase YP_001771878.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_001771879.1 PFAM: flagellar hook-length control protein; KEGG: mex:Mext_4095 flagellar hook-length control protein YP_001771880.1 PFAM: flagellar hook capping protein; KEGG: mex:Mext_4094 flagellar hook capping protein YP_001771881.1 PFAM: protein of unknown function DUF1153; KEGG: mex:Mext_4093 protein of unknown function DUF1153 YP_001771882.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mex:Mext_4088 sigma-54 factor interaction domain-containing protein YP_001771883.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: mex:Mext_4089 flagellar motor switch protein FliN YP_001771884.1 binds to and inhibits the function of flagella specific ATPase FliI YP_001771885.1 One of three proteins involved in switching the direction of the flagellar rotation YP_001771886.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_001771887.1 KEGG: mex:Mext_4390 hypothetical protein YP_001771889.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_3407 ABC transporter related YP_001771890.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_3406 binding-protein-dependent transport systems inner membrane component YP_001771891.1 PFAM: NADPH-dependent FMN reductase; KEGG: mex:Mext_3404 NADPH-dependent FMN reductase YP_001771892.1 KEGG: mex:Mext_1400 vault protein inter-alpha-trypsin domain protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: von Willebrand factor type A; PT repeat-containing protein; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa YP_001771893.1 PFAM: peptidase C60 sortase A and B; KEGG: mex:Mext_1399 sortase family protein YP_001771894.1 SMART: helix-turn-helix domain protein; KEGG: mex:Mext_1398 helix-turn-helix domain protein YP_001771895.1 PFAM: flagellin domain protein; KEGG: mex:Mext_0677 flagellin domain protein YP_001771896.1 PFAM: flagellin domain protein; KEGG: mex:Mext_0677 flagellin domain protein YP_001771897.1 PFAM: flagellin domain protein; KEGG: mex:Mext_0677 flagellin domain protein YP_001771898.1 KEGG: mlo:mlr2941 flagellar biosynthesis repressor FlbT YP_001771899.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sil:SPO2551 peptide/opine/nickel uptake family ABC transporter, ATP-binding protein YP_001771900.1 PFAM: binding-protein-dependent transport systems inner membrane component; ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: sil:SPO2552 peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein YP_001771901.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMb20477 putative didpeptide ABC transporter permease protein YP_001771902.1 PFAM: extracellular solute-binding protein family 5; KEGG: hch:HCH_00013 ABC-type dipeptide transport system, periplasmic component YP_001771903.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: bja:blr8000 hypothetical protein YP_001771904.1 KEGG: mex:Mext_1229 hypothetical protein YP_001771906.1 PFAM: Patatin; KEGG: bte:BTH_I0122 patatin-like phospholipase YP_001771907.1 PFAM: regulatory protein MarR; transcriptional regulator TrmB; KEGG: mex:Mext_2899 regulatory protein MarR YP_001771908.1 KEGG: mex:Mext_2602 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein YP_001771909.1 TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: mex:Mext_2603 flagellar biosynthetic protein FlhB YP_001771910.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: mex:Mext_2604 flagellar biosynthetic protein FliR YP_001771911.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: mex:Mext_2605 flagellar biosynthetic protein FliQ YP_001771912.1 PFAM: flagellar hook-basal body complex protein FliE; KEGG: mex:Mext_2606 flagellar hook-basal body complex subunit FliE YP_001771913.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_001771914.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum YP_001771915.1 KEGG: mex:Mext_2609 hypothetical protein YP_001771916.1 KEGG: mex:Mext_0427 flagellar biosynthetic protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein YP_001771917.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: mex:Mext_0429 tetratricopeptide TPR_4 protein YP_001771918.1 PFAM: Ppx/GppA phosphatase; KEGG: mex:Mext_2068 Ppx/GppA phosphatase YP_001771919.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_001771920.1 PFAM: Chromosomal replication initiator DnaA; KEGG: mex:Mext_2066 chromosomal replication initiator DnaA YP_001771921.1 PFAM: protein of unknown function UPF0118; KEGG: mex:Mext_2065 protein of unknown function UPF0118 YP_001771922.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: nha:Nham_2117 CDP-alcohol phosphatidyltransferase YP_001771923.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_001771924.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: mex:Mext_2062 phosphoribosylglycinamide formyltransferase YP_001771925.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: mex:Mext_0852 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_001771926.1 PFAM: GCN5-related N-acetyltransferase; regulatory protein MarR; KEGG: mes:Meso_2109 transcriptional regulator, MarR family with acetyltransferase activity YP_001771927.1 KEGG: mex:Mext_0857 8-amino-7-oxononanoate synthase; TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class V; aminotransferase class I and II YP_001771928.1 TIGRFAM: dethiobiotin synthase; KEGG: mex:Mext_2332 dethiobiotin synthase YP_001771929.1 KEGG: rle:RL2731 putative two-component sensor histidine kinase transcriptional regulatory protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein YP_001771930.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ret:RHE_PF00265 probable two-component sensor histidine kinase/response regulator hybrid protein YP_001771931.1 PFAM: response regulator receiver; KEGG: mxa:MXAN_0710 response regulator YP_001771932.1 KEGG: mxa:MXAN_0709 hypothetical protein; PFAM: KaiA binding; SMART: AAA ATPase YP_001771933.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ade:Adeh_2090 GAF sensor signal transduction histidine kinase YP_001771934.1 KEGG: mex:Mext_1979 hypothetical protein YP_001771935.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: mex:Mext_3354 diguanylate cyclase YP_001771936.1 PFAM: Methyltransferase type 12; KEGG: mex:Mext_3355 hypothetical protein YP_001771937.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: mex:Mext_2565 major facilitator superfamily MFS_1 YP_001771938.1 PFAM: Protein of unknown function DUF1800; KEGG: rpa:RPA3597 hypothetical protein YP_001771939.1 PFAM: protein of unknown function DUF1501; KEGG: azc:AZC_3729 hypothetical protein YP_001771940.1 KEGG: mex:Mext_1980 hypothetical protein YP_001771942.1 KEGG: mex:Mext_3766 hypothetical protein YP_001771944.1 PFAM: ROSMUCR transcriptional regulator; KEGG: mex:Mext_4474 ROSMUCR transcriptional regulator YP_001771945.1 KEGG: mex:Mext_4793 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein YP_001771946.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: mex:Mext_4125 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I YP_001771947.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: azc:AZC_0053 GDP-6-deoxy-D-lyxo-4-hexulose reductase YP_001771948.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: azc:AZC_0054 GDP-mannose 4,6-dehydratase YP_001771949.1 PFAM: glycosyl transferase group 1; KEGG: azc:AZC_1777 putative glycosyltransferase YP_001771950.1 KEGG: azc:AZC_3322 putative membrane-anchored protein YP_001771951.1 KEGG: mex:Mext_3028 nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_001771952.1 PFAM: metallophosphoesterase; KEGG: mex:Mext_3446 metallophosphoesterase YP_001771953.1 PFAM: MaoC domain protein dehydratase; KEGG: mex:Mext_3444 MaoC domain protein dehydratase YP_001771954.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: mex:Mext_3443 tRNA/rRNA methyltransferase (SpoU) YP_001771955.1 KEGG: acr:Acry_0783 hypothetical protein YP_001771956.1 TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mex:Mext_3441 phytoene desaturase YP_001771957.1 KEGG: mex:Mext_3440 hypothetical protein YP_001771958.1 PFAM: protein of unknown function DUF820; KEGG: mex:Mext_2040 protein of unknown function DUF820 YP_001771959.1 KEGG: mex:Mext_2750 hypothetical protein YP_001771960.1 PFAM: protein of unknown function DUF1244; KEGG: bra:BRADO1187 hypothetical protein YP_001771961.1 PFAM: N-formylglutamate amidohydrolase; KEGG: mex:Mext_2748 N-formylglutamate amidohydrolase YP_001771962.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bbt:BBta_5977 putative fumarylacetoacetate hydrolase family protein YP_001771963.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: azc:AZC_0443 conserved hypothetical transmembrane protein precursor YP_001771964.1 PFAM: MOFRL domain protein; KEGG: mex:Mext_2747 hydroxypyruvate reductase YP_001771965.1 PFAM: protein of unknown function DUF1036; KEGG: mex:Mext_2746 protein of unknown function DUF1036 YP_001771966.1 KEGG: mex:Mext_2744 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta YP_001771967.1 PFAM: alpha/beta hydrolase fold; KEGG: mex:Mext_2743 alpha/beta hydrolase fold YP_001771968.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mex:Mext_2742 tetratricopeptide TPR_2 repeat protein YP_001771969.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif YP_001771970.1 PFAM: chemotaxis sensory transducer; KEGG: bbt:BBta_4739 putative chemotaxis sensory transducer YP_001771971.1 KEGG: mex:Mext_0725 DedA family YP_001771972.1 KEGG: mex:Mext_0726 disulphide bond formation protein DsbB YP_001771973.1 PFAM: protein of unknown function DUF1178; KEGG: mex:Mext_3279 protein of unknown function DUF1178 YP_001771974.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mex:Mext_3278 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001771975.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: mex:Mext_3277 glutaredoxin 3 YP_001771976.1 PFAM: response regulator receiver; KEGG: mex:Mext_3276 response regulator receiver YP_001771977.1 KEGG: mex:Mext_3302 rhamnosyltransferase YP_001771978.1 PFAM: N-formylglutamate amidohydrolase; KEGG: mex:Mext_3275 N-formylglutamate amidohydrolase YP_001771979.1 PFAM: HpcH/HpaI aldolase; KEGG: mex:Mext_2147 citrate (pro-3S)-lyase YP_001771982.1 KEGG: mex:Mext_0933 hypothetical protein YP_001771983.1 PFAM: TadE family protein; KEGG: mex:Mext_0932 hypothetical protein YP_001771984.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpa:RPA2049 TrapT family, DctM subunit, C4-dicarboxylate transport YP_001771985.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: rpd:RPD_2114 tripartite ATP-independent periplasmic transporter, DctQ component YP_001771986.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rpa:RPA2047 TrapT family, DctP subunit, C4-dicarboxylate periplasmic binding protein YP_001771987.1 KEGG: rpa:RPA1610 hypothetical protein YP_001771988.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bov:BOV_A0749 acyl-CoA dehydrogenase family protein YP_001771989.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bra:BRADO4810 putative carnitine dehydratase/acyl-CoA transferases-related (COG1804) YP_001771992.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001771993.1 KEGG: sma:SAV4495 hypothetical protein YP_001771994.1 KEGG: mex:Mext_1186 conserved hypothetical protein; putative signal peptide YP_001771995.1 KEGG: pde:Pden_2307 cytochrome c1 YP_001771996.1 TIGRFAM: phasin; KEGG: mex:Mext_2560 phasin YP_001771997.1 KEGG: xau:Xaut_2298 tetratricopeptide TPR_2 repeat protein YP_001771998.1 KEGG: mex:Mext_3987 hypothetical protein YP_001772000.1 KEGG: mex:Mext_4286 hypothetical protein YP_001772001.1 KEGG: mex:Mext_3850 hypothetical protein YP_001772002.1 KEGG: bpm:BURPS1710b_A0946 phosphotransferase enzyme family protein YP_001772003.1 PFAM: CBS domain containing protein; Chloride channel core; KEGG: ret:RHE_CH02492 chloride channel protein YP_001772004.1 KEGG: mex:Mext_4687 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_001772005.1 PFAM: ribonuclease H; KEGG: mex:Mext_0936 ribonuclease H YP_001772006.1 TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: bbt:BBta_2047 putative purine permease YgfU-like (NCS2 family) YP_001772007.1 KEGG: scl:sce4023 putative uricase; TIGRFAM: urate oxidase; PFAM: Uricase YP_001772008.1 TIGRFAM: hydroxyisourate hydrolase; OHCU decarboxylase; PFAM: Transthyretin; Hydroxyisourate hydrolase; KEGG: bja:bll6163 hypothetical protein YP_001772009.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mex:Mext_4287 glyoxalase/bleomycin resistance protein/dioxygenase YP_001772010.1 KEGG: bra:BRADO6076 conserved hypothetical protein; putative signal peptide YP_001772011.1 PFAM: glucose-methanol-choline oxidoreductase; KEGG: bja:blr7491 putative 2-keto-gluconate dehydrogenase YP_001772012.1 PFAM: Phenolic acid decarboxylase; KEGG: sen:SACE_6202 phenolic acid decarboxylase YP_001772013.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: psa:PST_2684 transcriptional regulator, LysR family YP_001772014.1 KEGG: azc:AZC_0964 hypothetical protein YP_001772015.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_001772016.1 PFAM: Prephenate dehydrogenase; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: mex:Mext_1592 prephenate dehydrogenase YP_001772017.1 PFAM: Patatin; KEGG: mex:Mext_4420 patatin YP_001772019.1 paralogs to the E1 component of pyruvate dehydrogenase subunit E1 YP_001772020.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: afw:Anae109_4127 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase YP_001772021.1 PFAM: protein of unknown function DUF519; KEGG: mex:Mext_0920 protein of unknown function DUF519 YP_001772023.1 PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_1951 major facilitator superfamily MFS_1 YP_001772024.1 PFAM: glutamine amidotransferase class-II; KEGG: mex:Mext_4461 glutamine amidotransferase class-II YP_001772026.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: rle:RL1518 putative HD domain protein YP_001772027.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mex:Mext_4462 RNA polymerase sigma factor, sigma-70 family YP_001772028.1 PFAM: protein of unknown function DUF1236; KEGG: mex:Mext_2581 protein of unknown function DUF1236 YP_001772029.1 KEGG: mex:Mext_2580 hypothetical protein YP_001772030.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: aav:Aave_2207 trans-aconitate 2-methyltransferase YP_001772031.1 PFAM: OstA family protein; KEGG: mex:Mext_2499 OstA family protein YP_001772032.1 PFAM: protein of unknown function DUF1239; KEGG: mex:Mext_2498 protein of unknown function DUF1239 YP_001772033.1 PFAM: 3'-5' exonuclease; KEGG: mex:Mext_2497 3'-5' exonuclease YP_001772034.1 PFAM: helix-hairpin-helix motif; KEGG: mex:Mext_2496 hypothetical protein YP_001772035.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_001772037.1 TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: mex:Mext_3468 polyhydroxyalkanoate synthesis repressor PhaR YP_001772038.1 KEGG: mex:Mext_3469 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Beta-ketoacyl synthase YP_001772039.1 TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mex:Mext_3470 acetoacetyl-CoA reductase YP_001772040.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: mex:Mext_2331 oxidoreductase FAD/NAD(P)-binding domain protein YP_001772041.1 PFAM: Asp/Glu/hydantoin racemase; KEGG: pol:Bpro_1006 Asp/Glu racemase YP_001772042.1 KEGG: mex:Mext_1594 hypothetical protein YP_001772043.1 PFAM: peptidase M48 Ste24p; KEGG: mex:Mext_3303 peptidase M48 Ste24p YP_001772044.1 KEGG: mex:Mext_3304 hypothetical protein YP_001772045.1 PFAM: helix-turn-helix domain protein; KEGG: mex:Mext_3305 helix-turn-helix domain protein YP_001772046.1 PFAM: S-adenosylmethionine synthetase; KEGG: mex:Mext_3306 methionine adenosyltransferase YP_001772047.1 KEGG: mex:Mext_3307 tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: putative methyltransferase YP_001772048.1 KEGG: mex:Mext_3300 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001772049.1 KEGG: bja:bll5199 hypothetical protein YP_001772050.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; response regulator receiver; KEGG: bja:blr2864 two-component response regulator YP_001772051.1 PFAM: response regulator receiver; KEGG: bja:bsr2863 two-component response regulator YP_001772052.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Cache domain protein; KEGG: bja:blr2862 two-component hybrid sensor and regulator YP_001772053.1 KEGG: bja:blr5116 Nrd protein YP_001772054.1 PFAM: nitroreductase; KEGG: xau:Xaut_1130 nitroreductase YP_001772055.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: mlo:mlr1674 hypothetical protein YP_001772056.1 KEGG: pde:Pden_5118 hypothetical protein YP_001772057.1 TIGRFAM: integral membrane protein MviN; PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; KEGG: mex:Mext_3297 integral membrane protein MviN YP_001772058.1 PFAM: glycosyl transferase family 2; KEGG: azo:azo0749 conserved hypothetical glycosyltransferase YP_001772059.1 PFAM: YdjC family protein; KEGG: azo:azo0748 cellobiose phosphorylase YP_001772060.1 PFAM: manganese and iron superoxide dismutase; KEGG: mex:Mext_3298 superoxide dismutase YP_001772061.1 KEGG: mex:Mext_3299 hypothetical protein YP_001772062.1 TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mex:Mext_3296 haloacid dehalogenase, type II YP_001772063.1 PFAM: protein of unknown function DUF949; KEGG: mex:Mext_4457 protein of unknown function DUF949 YP_001772064.1 PFAM: protein of unknown function DUF1643; KEGG: smd:Smed_1928 protein of unknown function DUF1643 YP_001772066.1 TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: mex:Mext_4211 lipoate-protein ligase B YP_001772067.1 PFAM: surface presentation of antigens (SPOA) protein; KEGG: mex:Mext_4210 surface presentation of antigens (SpoA) protein YP_001772068.1 KEGG: sma:SAV203 hypothetical protein YP_001772069.1 KEGG: bbt:BBta_0888 hypothetical protein YP_001772070.1 KEGG: mex:Mext_1630 phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit YP_001772071.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_001772072.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_001772073.1 PFAM: ribosomal protein L35; KEGG: mex:Mext_1627 ribosomal protein L35 YP_001772074.1 PFAM: glycosyl transferase group 1; KEGG: mex:Mext_1626 glycosyl transferase group 1 YP_001772075.1 PFAM: Amylo-alpha-16-glucosidase; KEGG: mex:Mext_1625 amylo-alpha-16-glucosidase YP_001772076.1 PFAM: protein of unknown function UPF0066; KEGG: mex:Mext_0709 protein of unknown function UPF0066 YP_001772077.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: azc:AZC_0660 methyl-accepting chemotaxis protein YP_001772078.1 KEGG: mex:Mext_0986 hypothetical protein YP_001772079.1 PFAM: polysaccharide biosynthesis protein; KEGG: mex:Mext_0987 polysaccharide biosynthesis protein YP_001772080.1 TIGRFAM: amino acid adenylation domain protein; non-ribosomal peptide synthetase; PFAM: AMP-dependent synthetase and ligase; transferase hexapeptide repeat containing protein; KEGG: mex:Mext_3972 non-ribosomal peptide synthetase YP_001772081.1 PFAM: Phosphoglycerate mutase; KEGG: mex:Mext_4289 phosphoglycerate mutase YP_001772082.1 PFAM: protein of unknown function DUF344; KEGG: mex:Mext_4290 protein of unknown function DUF344 YP_001772083.1 KEGG: xau:Xaut_3114 hypothetical protein YP_001772084.1 PFAM: glycosyl transferase family 2; KEGG: mex:Mext_3302 rhamnosyltransferase YP_001772085.1 KEGG: mex:Mext_2577 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II YP_001772086.1 PFAM: aldo/keto reductase; KEGG: aav:Aave_3016 aldo/keto reductase YP_001772087.1 PFAM: beta-lactamase domain protein; KEGG: mex:Mext_2576 beta-lactamase domain protein YP_001772088.1 PFAM: tyrosinase; KEGG: hch:HCH_03392 probable oxidoreductase containing common central domain of tyrosinase YP_001772089.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: bja:bll7569 probable O-methyltransferase YP_001772090.1 PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: mex:Mext_1245 glycosyl transferase family 51 YP_001772091.1 KEGG: mex:Mext_1244 hypothetical protein YP_001772092.1 KEGG: mex:Mext_1602 hypothetical protein YP_001772094.1 PFAM: protein of unknown function DUF336; KEGG: mex:Mext_4271 protein of unknown function DUF336 YP_001772095.1 PFAM: extracellular solute-binding protein family 5; KEGG: mex:Mext_4272 extracellular solute-binding protein family 5 YP_001772096.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_4273 binding-protein-dependent transport systems inner membrane component YP_001772097.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_4274 binding-protein-dependent transport systems inner membrane component YP_001772098.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsh:Rsph17029_0129 ABC transporter related YP_001772099.1 KEGG: rpd:RPD_2771 hypothetical protein YP_001772100.1 PFAM: beta-lactamase; KEGG: mex:Mext_4402 beta-lactamase YP_001772101.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: azc:AZC_2867 2-nitropropane dioxygenase YP_001772102.1 KEGG: spo:SPAC11D3.04c hypothetical protein YP_001772103.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aha:AHA_3854 HTH-type transcriptional regulator TrpI YP_001772104.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bam:Bamb_5694 lysine exporter protein (LysE/YggA) YP_001772105.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_001772106.1 PFAM: beta-lactamase domain protein; KEGG: xau:Xaut_1641 beta-lactamase domain protein YP_001772107.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: mex:Mext_0548 CutA1 divalent ion tolerance protein YP_001772108.1 PFAM: ATP-NAD/AcoX kinase; KEGG: mex:Mext_0549 NAD(+) kinase YP_001772110.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: mex:Mext_3510 ATP-binding region ATPase domain protein YP_001772111.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: mex:Mext_3509 metal-dependent phosphohydrolase HD sub domain YP_001772112.1 KEGG: rpc:RPC_2531 hypothetical protein YP_001772113.1 PFAM: protein of unknown function DUF1130; KEGG: mex:Mext_3900 protein of unknown function DUF1130 YP_001772114.1 PFAM: glycoside hydrolase family 25; KEGG: mex:Mext_3899 glycoside hydrolase family 25 YP_001772115.1 PFAM: ribonuclease HII/HIII; KEGG: mex:Mext_1792 ribonuclease H YP_001772116.1 activates fatty acids by binding to coenzyme A YP_001772117.1 KEGG: xau:Xaut_3907 hypothetical protein YP_001772118.1 PFAM: Hly-III family protein; KEGG: mex:Mext_1608 Hly-III family protein YP_001772119.1 PFAM: cytochrome oxidase assembly; KEGG: mex:Mext_1607 cytochrome oxidase assembly YP_001772120.1 KEGG: mex:Mext_1606 hypothetical protein YP_001772121.1 KEGG: mex:Mext_1605 hypothetical protein YP_001772122.1 PFAM: polysaccharide deacetylase; KEGG: mex:Mext_1604 polysaccharide deacetylase YP_001772123.1 KEGG: mex:Mext_1603 conserved hypothetical protein; putative acyl-CoA N-acyltransferase related protein YP_001772125.1 PFAM: glycine hydroxymethyltransferase; KEGG: azc:AZC_3051 serine hydroxymethyltransferase YP_001772127.1 TIGRFAM: parB-like partition protein; plasmid partitioning protein RepB; PFAM: ParB domain protein nuclease; RepB plasmid partition; KEGG: xau:Xaut_4790 ParB-like partition protein YP_001772128.1 TIGRFAM: plasmid partitioning protein RepA; PFAM: regulatory protein MerR; Cobyrinic acid ac-diamide synthase; KEGG: xau:Xaut_4789 cobyrinic acid ac-diamide synthase YP_001772129.1 KEGG: rpa:RPA3353 putative serine/threonine protein phosphatase YP_001772130.1 PFAM: BA14K family protein; KEGG: mex:Mext_2493 BA14K family protein YP_001772131.1 PFAM: CsbD family protein; KEGG: mex:Mext_0367 CsbD family protein YP_001772132.1 PFAM: CsbD family protein; KEGG: mex:Mext_2136 CsbD family protein YP_001772133.1 KEGG: mex:Mext_0365 conserved hypothetical membrane spanning protein YP_001772134.1 PFAM: CsbD family protein; KEGG: mex:Mext_0364 CsbD family protein YP_001772135.1 PFAM: ferric-uptake regulator; KEGG: mex:Mext_1045 Fe2+/Zn2+ uptake regulation protein-like protein YP_001772137.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_1046 ABC transporter related YP_001772138.1 PFAM: ABC-3 protein; KEGG: mex:Mext_1047 ABC-3 protein YP_001772139.1 PFAM: glycosyl transferase group 1; Tetratricopeptide TPR_4; KEGG: mex:Mext_1373 glycosyl transferase group 1 YP_001772140.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mes:Meso_3107 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001772141.1 KEGG: mex:Mext_0938 hypothetical protein YP_001772142.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: mex:Mext_4674 molybdenum cofactor synthesis domain protein YP_001772143.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: mex:Mext_4673 molybdenum cofactor biosynthesis protein C YP_001772144.1 PFAM: Indole-3-glycerol phosphate synthase; KEGG: mex:Mext_4672 indole-3-glycerol-phosphate synthase YP_001772145.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001772146.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: mex:Mext_4670 glutamine amidotransferase of anthranilate synthase YP_001772147.1 KEGG: eba:ebA7093 hypothetical protein YP_001772148.1 KEGG: mex:Mext_4668 anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like YP_001772149.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: mex:Mext_4667 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001772150.1 PFAM: triosephosphate isomerase; KEGG: pla:Plav_3166 triose-phosphate isomerase YP_001772151.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: mex:Mext_4662 preprotein translocase, SecG subunit YP_001772152.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_001772153.1 PFAM: protein of unknown function DUF350; KEGG: mex:Mext_4660 protein of unknown function DUF350 YP_001772154.1 KEGG: mex:Mext_4659 integral membrane protein-like protein YP_001772155.1 PFAM: glutathionylspermidine synthase; KEGG: mex:Mext_4658 glutathionylspermidine synthase YP_001772156.1 PFAM: DNA polymerase III chi subunit HolC; KEGG: mex:Mext_4656 DNA polymerase III chi subunit HolC YP_001772157.1 PFAM: peptidase S10 serine carboxypeptidase; KEGG: mex:Mext_4655 peptidase S10 serine carboxypeptidase YP_001772158.1 KEGG: mex:Mext_4654 hypothetical protein YP_001772159.1 KEGG: mex:Mext_0989 OpgC protein YP_001772160.1 KEGG: mex:Mext_0988 hypothetical protein YP_001772161.1 KEGG: mex:Mext_4006 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB YP_001772162.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mex:Mext_2089 LysR substrate-binding YP_001772164.1 PFAM: regulatory protein LuxR; KEGG: mlo:mll6760 two component system response regulator YP_001772166.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mex:Mext_1768 radical SAM domain protein YP_001772167.1 KEGG: mex:Mext_1769 hypothetical protein YP_001772168.1 TIGRFAM: molybdenum cofactor synthesis domain protein; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: mex:Mext_0995 molybdenum cofactor biosynthesis protein B YP_001772169.1 PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: mex:Mext_4245 protein of unknown function zinc metallopeptidase putative YP_001772170.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: mex:Mext_4246 phage SPO1 DNA polymerase-related protein YP_001772171.1 PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: mex:Mext_4247 electron-transferring-flavoprotein dehydrogenase YP_001772172.1 PFAM: sodium:dicarboxylate symporter; KEGG: rme:Rmet_1122 sodium:dicarboxylate symporter YP_001772173.1 PFAM: extracellular solute-binding protein family 3; KEGG: bam:Bamb_6249 extracellular solute-binding protein, family 3 YP_001772174.1 PFAM: leucyl/phenylalanyl-tRNA--protein transferase; KEGG: mex:Mext_1097 leucyltransferase YP_001772175.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: mex:Mext_1096 acetyl-CoA carboxylase, biotin carboxylase YP_001772176.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: mex:Mext_1095 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_001772177.1 PFAM: DSBA oxidoreductase; KEGG: mex:Mext_3655 DsbA oxidoreductase YP_001772178.1 PFAM: aminotransferase class I and II; KEGG: mex:Mext_3658 aminotransferase class I and II YP_001772179.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: mex:Mext_0991 ribulose-phosphate 3-epimerase YP_001772180.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_001772181.1 PFAM: Extracellular ligand-binding receptor; KEGG: xau:Xaut_3905 extracellular ligand-binding receptor YP_001772182.1 KEGG: oan:Oant_1116 hypothetical protein YP_001772183.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azc:AZC_2945 amino acid ABC transporter ATP-binding protein YP_001772184.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: oan:Oant_1001 lysine exporter protein (LysE/YggA) YP_001772185.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcs:BCAN_A1827 ABC transporter related YP_001772186.1 PFAM: inner-membrane translocator; KEGG: azc:AZC_2943 branched-chain amino acid ABC transporter permease protein YP_001772187.1 PFAM: inner-membrane translocator; KEGG: azc:AZC_2942 branched-chain amino acid ABC transporter permease protein YP_001772188.1 PFAM: cyclase/dehydrase; carbon monoxide dehydrogenase subunit G; KEGG: bja:bll5666 hypothetical protein YP_001772189.1 KEGG: spl:Spea_0607 conserved hypothetical protein YP_001772190.1 KEGG: ttj:TTHA0886 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like YP_001772191.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: azc:AZC_2939 carbon-monoxide dehydrogenase small subunit YP_001772192.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: azc:AZC_2938 carbon-monoxide dehydrogenase large subunit YP_001772193.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: bbt:BBta_5317 putative carbon monoxide dehydrogenase medium subunit, CoxM-like protein YP_001772194.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: pde:Pden_1963 plasmid maintenance system antidote protein, XRE family YP_001772195.1 PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rpd:RPD_1784 ATPase associated with various cellular activities, AAA_5 YP_001772196.1 PFAM: VWA containing CoxE family protein; KEGG: mes:Meso_1291 VWA containing CoxE-like YP_001772197.1 PFAM: protein of unknown function DUF182; KEGG: mex:Mext_1055 protein of unknown function DUF182 YP_001772198.1 KEGG: mex:Mext_1056 xanthine dehydrogenase accessory factor YP_001772199.1 PFAM: molybdopterin binding domain; KEGG: mex:Mext_1057 molybdopterin binding domain YP_001772200.1 KEGG: mex:Mext_1058 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_001772201.1 PFAM: Exopolysaccharide synthesis ExoD; KEGG: mex:Mext_1063 exopolysaccharide synthesis ExoD YP_001772202.1 PFAM: Usg family protein; KEGG: bra:BRADO2894 conserved hypothetical protein; putative Usg protein YP_001772203.1 KEGG: mex:Mext_1062 hypothetical protein YP_001772204.1 PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: acr:Acry_1728 deoxyribodipyrimidine photolyase-related protein YP_001772205.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mex:Mext_1061 short-chain dehydrogenase/reductase SDR YP_001772206.1 PFAM: formyl transferase domain protein; KEGG: mex:Mext_1060 formyl transferase domain protein YP_001772207.1 KEGG: mex:Mext_1059 hypothetical protein YP_001772208.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: mex:Mext_2291 diguanylate cyclase YP_001772209.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: xau:Xaut_4936 drug resistance transporter, Bcr/CflA subfamily YP_001772211.1 PFAM: autoinducer synthesis protein; KEGG: mex:Mext_4513 autoinducer synthesis protein YP_001772212.1 PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: mex:Mext_4514 autoinducer-binding domain protein YP_001772213.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: mex:Mext_4782 chaperonin GroEL YP_001772214.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_001772217.1 TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: mex:Mext_3405 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein YP_001772218.1 PFAM: protein of unknown function UPF0005; KEGG: mex:Mext_2268 protein of unknown function UPF0005 YP_001772219.1 PFAM: protein of unknown function DUF214; KEGG: mex:Mext_2269 protein of unknown function DUF214 YP_001772220.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_3993 ABC transporter related YP_001772221.1 PFAM: lipolytic protein G-D-S-L family; KEGG: mex:Mext_3994 lipolytic protein G-D-S-L family YP_001772222.1 TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: mex:Mext_3995 2'-5' RNA ligase YP_001772223.1 PFAM: regulatory protein TetR; KEGG: mex:Mext_1522 regulatory protein TetR YP_001772224.1 KEGG: mex:Mext_1523 hypothetical protein YP_001772225.1 PFAM: glutathione peroxidase; KEGG: mex:Mext_0316 glutathione peroxidase YP_001772226.1 KEGG: mex:Mext_0584 sulfate ABC transporter, ATPase subunit; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_001772227.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_0583 sulfate ABC transporter, inner membrane subunit CysW YP_001772228.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_0121 sulfate ABC transporter, inner membrane subunit CysT YP_001772229.1 KEGG: mex:Mext_2232 sulfate adenylyltransferase, large subunit; TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; extracellular solute-binding protein family 1 YP_001772230.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_001772231.1 KEGG: mex:Mext_2234 adenylylsulfate reductase, thioredoxin dependent; TIGRFAM: adenylylsulfate reductase, thioredoxin dependent; PFAM: phosphoadenosine phosphosulfate reductase YP_001772232.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: mex:Mext_2235 regulatory protein AsnC/Lrp family YP_001772233.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: mex:Mext_2236 flavodoxin/nitric oxide synthase YP_001772234.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide YP_001772235.1 PFAM: aminotransferase class IV; KEGG: mex:Mext_4602 aminotransferase class IV YP_001772236.1 PFAM: protein of unknown function DUF861 cupin_3; KEGG: mex:Mext_4603 protein of unknown function DUF861 cupin_3 YP_001772237.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: mex:Mext_4595 alpha/beta hydrolase fold-3 domain protein YP_001772238.1 PFAM: ROSMUCR transcriptional regulator; KEGG: mlo:mll9315 transcriptional regulatory protein YP_001772240.1 KEGG: mex:Mext_0887 hypothetical protein YP_001772241.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: mex:Mext_0886 cold-shock protein DNA-binding YP_001772242.1 KEGG: mex:Mext_4152 hypothetical protein YP_001772243.1 KEGG: gbe:GbCGDNIH1_0092 hypothetical protein YP_001772244.1 KEGG: mex:Mext_0885 hypothetical protein YP_001772245.1 KEGG: mex:Mext_0883 hypothetical protein YP_001772246.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: mex:Mext_0882 intracellular protease, PfpI family YP_001772247.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: mex:Mext_2101 cell divisionFtsK/SpoIIIE YP_001772248.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: mex:Mext_2099 ammonium transporter YP_001772249.1 PFAM: nitrogen regulatory protein P-II; KEGG: mex:Mext_2098 nitrogen regulatory protein P-II YP_001772250.1 KEGG: mex:Mext_2097 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase YP_001772251.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: mex:Mext_2088 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family YP_001772252.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space YP_001772253.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans YP_001772254.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: mex:Mext_4156 UDP-N-acetylglucosamine pyrophosphorylase YP_001772255.1 KEGG: sus:Acid_5124 hypothetical protein YP_001772256.1 KEGG: mex:Mext_3888 RNA polymerase sigma factor, sigma-70 family YP_001772257.1 KEGG: mex:Mext_3889 uncharacterized protein-like protein YP_001772258.1 TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: mex:Mext_4157 glucosamine--fructose-6-phosphate aminotransferase, isomerizing YP_001772259.1 PFAM: cation efflux protein; KEGG: mlo:mlr2295 probable transporter YP_001772261.1 KEGG: azc:AZC_3153 methyl-accepting chemotaxis receptor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein YP_001772262.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: mex:Mext_3065 cation diffusion facilitator family transporter YP_001772263.1 KEGG: mex:Mext_3066 hypothetical protein YP_001772264.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_001772265.1 KEGG: mex:Mext_3071 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase YP_001772266.1 KEGG: mex:Mext_3073 hypothetical protein YP_001772267.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sal:Sala_2416 transcriptional regulator, LysR family YP_001772268.1 PFAM: FAD dependent oxidoreductase; KEGG: mes:Meso_1861 FAD dependent oxidoreductase YP_001772269.1 PFAM: extracellular solute-binding protein family 3; KEGG: sil:SPO2667 polar amino acid uptake family ABC transporter, periplasmic substrate-binding protein YP_001772270.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_1837 polar amino acid uptake family ABC transporter permease protein 1 YP_001772271.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sil:SPO3042 polar amino acid uptake family ABC transporter, permease protein YP_001772272.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sil:SPO3043 glutamine ABC transporter, ATP-binding protein YP_001772273.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: sth:STH135 ComE operon protein 4 YP_001772274.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: smd:Smed_5465 NADH:flavin oxidoreductase/NADH oxidase YP_001772275.1 PFAM: FAD dependent oxidoreductase; KEGG: bja:bll6826 putative oxidoreductase YP_001772276.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bja:bll6827 2-haloalkanoic acid dehalogenase YP_001772277.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:blr6829 transcriptional regulatory protein YP_001772278.1 KEGG: xau:Xaut_3229 putative ABC branched-chain amino transporter, periplasmic binding protein YP_001772279.1 KEGG: fre:Franean1_1420 transposase YP_001772280.1 KEGG: rru:Rru_A2278 transposase IS66 YP_001772281.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: ret:RHE_PA00078 putative insertion sequence ATP-binding protein, IS21 family YP_001772282.1 PFAM: Integrase catalytic region; KEGG: swi:Swit_5106 integrase, catalytic region YP_001772283.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bpt:Bpet3908 probable short chain dehydrogenase YP_001772284.1 PFAM: major facilitator superfamily MFS_1; KEGG: msm:MSMEG_5347 transporter, major facilitator family protein YP_001772285.1 PFAM: protein of unknown function DUF849; KEGG: bpt:Bpet3914 hypothetical protein YP_001772286.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pde:Pden_4528 helix-turn-helix-domain containing protein, AraC type YP_001772287.1 TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); KEGG: mex:Mext_0935 DNA-3-methyladenine glycosylase YP_001772288.1 KEGG: mex:Mext_0085 hypothetical protein YP_001772289.1 KEGG: mex:Mext_0084 hypothetical protein YP_001772290.1 KEGG: mex:Mext_0009 helicase, RecD/TraA family; TIGRFAM: helicase, RecD/TraA family; SMART: Helix-hairpin-helix DNA-binding class 1 YP_001772291.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: bja:blr5556 hypothetical protein YP_001772292.1 KEGG: amr:AM1_E0006 transposase, IS4 family, putative YP_001772293.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: rpa:RPA3475 putative transposase YP_001772294.1 KEGG: ana:alr7249 unknown protein YP_001772295.1 KEGG: azc:AZC_2751 globin; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001772297.1 KEGG: mex:Mext_0168 hypothetical protein YP_001772298.1 KEGG: reu:Reut_A1647 putative depolymerase YP_001772299.1 KEGG: smd:Smed_6421 hypothetical protein YP_001772301.1 KEGG: mex:Mext_0450 hypothetical protein YP_001772302.1 PFAM: Sporulation domain protein; Lytic transglycosylase catalytic; KEGG: mex:Mext_0083 lytic transglycosylase catalytic YP_001772304.1 PFAM: ROSMUCR transcriptional regulator; KEGG: ccr:CC_0949 transcriptional regulator YP_001772305.1 PFAM: ROSMUCR transcriptional regulator; KEGG: mex:Mext_2438 ROSMUCR transcriptional regulator YP_001772307.1 KEGG: rpb:RPB_2400 hypothetical protein YP_001772308.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: rpc:RPC_1278 Mg2+ transporter protein, CorA-like YP_001772311.1 PFAM: sodium/hydrogen exchanger; KEGG: sen:SACE_4782 possible sodium/hydrogen antiporter YP_001772312.1 KEGG: oan:Oant_4519 putative transposase YP_001772313.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mms:mma_0091 transcriptional regulator, GntR family YP_001772314.1 KEGG: bxe:Bxe_A0019 ABC branched-chain amino acid family transporter, periplasmic ligand binding protein YP_001772315.1 KEGG: mex:Mext_3808 hypothetical protein YP_001772316.1 KEGG: mex:Mext_3807 hypothetical protein YP_001772317.1 KEGG: rle:pRL70101 conserved hypothetical protein, possible fusion protein YP_001772318.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: amr:AM1_5320 ferredoxin subunits of nitrite reductase and ring-hydroxylating YP_001772319.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: mex:Mext_4782 chaperonin GroEL YP_001772320.1 PFAM: chaperonin Cpn10; KEGG: mex:Mext_4783 chaperonin Cpn10 YP_001772321.1 KEGG: mex:Mext_1881 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001772322.1 KEGG: mex:Mext_0783 cyclic nucleotide-binding YP_001772323.1 PFAM: GAF domain protein; HWE histidine kinase; KEGG: mlo:mlr9680 sensory transduction histidine kinase YP_001772324.1 PFAM: extracellular solute-binding protein family 1; KEGG: rpe:RPE_0440 extracellular solute-binding protein, family 1 YP_001772325.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: mex:Mext_2113 ATP-binding region ATPase domain protein YP_001772326.1 KEGG: nha:Nham_3895 putative transposase YP_001772327.1 PFAM: Integrase catalytic region; KEGG: sen:SACE_5091 transposase YP_001772328.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mex:Mext_2270 ATP-binding region ATPase domain protein YP_001772329.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: nha:Nham_3939 transposase IS116/IS110/IS902 YP_001772330.1 PFAM: Integrase catalytic region; KEGG: bcn:Bcen_5102 integrase, catalytic region YP_001772331.1 KEGG: aav:Aave_4118 integrase, catalytic region YP_001772332.1 PFAM: transposase IS3/IS911 family protein; KEGG: aav:Aave_4117 transposase IS3/IS911 family protein YP_001772333.1 KEGG: ang:An05g02280 hypothetical protein Pfam: PGAP1 Abhydrolase_1 YP_001772334.1 PFAM: GAF domain protein; HWE histidine kinase; KEGG: mlo:mlr9680 sensory transduction histidine kinase YP_001772335.1 KEGG: mex:Mext_0783 cyclic nucleotide-binding YP_001772336.1 KEGG: mex:Mext_0739 hypothetical protein YP_001772337.1 PFAM: PRC-barrel domain protein; KEGG: ret:RHE_CH00479 hypothetical protein YP_001772338.1 PFAM: ThiJ/PfpI domain protein; KEGG: gdi:GDI2843 putative intracellular protease/amidase YP_001772339.1 PFAM: dihydrodipicolinate synthetase; KEGG: rxy:Rxyl_2258 dihydrodipicolinate synthase YP_001772341.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: sus:Acid_3767 4-oxalocrotonate tautomerase YP_001772342.1 PFAM: transcriptional regulator domain protein; KEGG: sme:SMb20702 putative regulatory protein, possibly two-component response regulator YP_001772343.1 KEGG: eca:ECA1285 hypothetical protein YP_001772344.1 PFAM: protein of unknown function DUF1446; KEGG: bra:BRADO1397 hypothetical protein YP_001772345.1 TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: Citrate transporter; KEGG: bur:Bcep18194_A4510 citrate transporter YP_001772346.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bmu:Bmul_1930 transcriptional regulator, LysR family YP_001772347.1 PFAM: globin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: swi:Swit_3173 globin YP_001772348.1 PFAM: amidohydrolase 2; KEGG: bra:BRADO3864 conserved hypothetical protein; putative amidohydrolase; putative exported protein YP_001772349.1 PFAM: amidohydrolase 2; KEGG: pol:Bpro_3820 amidohydrolase 2 YP_001772350.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: bja:blr2277 hypothetical protein YP_001772351.1 PFAM: major facilitator superfamily MFS_1; KEGG: rpc:RPC_2715 major facilitator superfamily MFS_1 YP_001772352.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: bpt:Bpet0386 putative transferase YP_001772353.1 PFAM: Phosphogluconate dehydrogenase, NAD-binding, putative-like; KEGG: bja:blr2279 hypothetical protein YP_001772354.1 PFAM: FAD linked oxidase domain protein; KEGG: rpc:RPC_2718 FAD linked oxidase-like YP_001772355.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_5395 major facilitator superfamily MFS_1 YP_001772356.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bja:blr2275 transcriptional regulatory protein YP_001772357.1 KEGG: bxe:Bxe_C1302 putative deaminase-reductase YP_001772358.1 KEGG: gsu:GSU3082 ISGsu7, transposase OrfA YP_001772359.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: scl:sce5642 putative zinc-binding oxidoreductase YP_001772360.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: bam:Bamb_6385 cupin 2, conserved barrel domain protein YP_001772361.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: bam:Bamb_6387 metal-dependent phosphohydrolase, HD subdomain YP_001772362.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bpt:Bpet3002 transcriptional regulator, GntR-family YP_001772363.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbt:BBta_0225 putative 3-oxoacyl-(acyl-carrier-protein) reductase 1 (fabG1) YP_001772364.1 KEGG: ret:RHE_CH00445 hypothetical protein YP_001772365.1 PFAM: amidohydrolase; KEGG: sfu:Sfum_2145 allantoinase YP_001772366.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_2144 ABC transporter related YP_001772367.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_2143 ABC transporter related YP_001772368.1 PFAM: inner-membrane translocator; KEGG: sfu:Sfum_2142 inner-membrane translocator YP_001772369.1 PFAM: inner-membrane translocator; KEGG: sfu:Sfum_2141 inner-membrane translocator YP_001772370.1 PFAM: Extracellular ligand-binding receptor; KEGG: sfu:Sfum_2140 extracellular ligand-binding receptor YP_001772371.1 KEGG: rle:pRL120139 hypothetical protein YP_001772372.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: rxy:Rxyl_2744 cobalamin synthesis protein, P47K YP_001772373.1 PFAM: regulatory protein TetR; KEGG: smd:Smed_3330 transcriptional regulator, TetR family YP_001772374.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: oan:Oant_4582 5-oxoprolinase (ATP-hydrolyzing) YP_001772375.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: oan:Oant_4581 5-oxoprolinase (ATP-hydrolyzing) YP_001772376.1 PFAM: PRC-barrel domain protein; KEGG: azc:AZC_0981 hypothetical protein YP_001772377.1 PFAM: protein of unknown function DUF892; KEGG: mex:Mext_2776 protein of unknown function DUF892 YP_001772378.1 PFAM: monooxygenase FAD-binding; KEGG: azc:AZC_0736 FAD-binding monooxygenase YP_001772379.1 PFAM: chalcone and stilbene synthase domain protein; FAE1/Type III polyketide synthase-like protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: bbt:BBta_0202 putative type III polyketide synthase YP_001772380.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: rsh:Rsph17029_1869 isoprenylcysteine carboxyl methyltransferase YP_001772381.1 PFAM: protein of unknown function DUF892; KEGG: mex:Mext_1129 protein of unknown function DUF892 YP_001772382.1 KEGG: mex:Mext_1855 hypothetical protein YP_001772383.1 KEGG: noc:Noc_1447 hypothetical protein YP_001772385.1 PFAM: cyclic nucleotide-binding; KEGG: rpe:RPE_1778 transcriptional regulator, Crp/Fnr family YP_001772386.1 PFAM: carboxyl transferase; KEGG: mex:Mext_0282 carboxyl transferase YP_001772387.1 TIGRFAM: crotonyl-CoA reductase; PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: xau:Xaut_1195 crotonyl-CoA reductase YP_001772388.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: acr:Acry_2334 transcriptional regulator, LysR family YP_001772389.1 KEGG: rpd:RPD_0652 hypothetical protein YP_001772390.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rpd:RPD_0653 NADH/ubiquinone/plastoquinone (complex I) YP_001772391.1 KEGG: gvi:glr2085 hypothetical protein YP_001772394.1 PFAM: Propeptide PepSY amd peptidase M4; KEGG: mex:Mext_3968 propeptide PepSY amd peptidase M4 YP_001772396.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro07103 probable NADH dehydrogenase YP_001772397.1 KEGG: aav:Aave_0803 methyl-accepting chemotaxis sensory transducer YP_001772398.1 PFAM: NnrS family protein; KEGG: rpe:RPE_1288 NnrS family protein YP_001772399.1 PFAM: protein of unknown function DUF59; KEGG: bpd:BURPS668_2681 phenylacetic acid degradation protein PaaD YP_001772400.1 KEGG: nwi:Nwi_3002 hypothetical protein YP_001772401.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: rpc:RPC_4554 molybdopterin binding domain YP_001772402.1 KEGG: azc:AZC_0899 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001772403.1 PFAM: carbonic anhydrase; KEGG: hne:HNE_1567 carbonic anhydrase YP_001772404.1 KEGG: hne:HNE_1566 hypothetical protein YP_001772406.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: azc:AZC_1429 putative peptidyl-prolyl cis-trans isomerase YP_001772407.1 KEGG: azc:AZC_1428 nitrate reductase gamma subunit protein; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit YP_001772408.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase delta subunit; KEGG: pde:Pden_4234 nitrate reductase molybdenum cofactor assembly chaperone YP_001772409.1 TIGRFAM: nitrate reductase, beta subunit; KEGG: azc:AZC_1426 nitrate reductase beta subunit protein YP_001772410.1 TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: azc:AZC_1425 nitrate reductase alpha subunit protein YP_001772411.1 PFAM: major facilitator superfamily MFS_1; KEGG: saq:Sare_0190 nitrate/nitrite transporter-like protein YP_001772412.1 PFAM: major facilitator superfamily MFS_1; KEGG: hne:HNE_1559 nitrite extrusion protein YP_001772414.1 PFAM: beta-lactamase domain protein; KEGG: azc:AZC_1303 metallo-beta-lactamase superfamily protein YP_001772415.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: bja:blr3358 putative ferredoxin YP_001772417.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr3357 ABC transporter ATP-binding protein YP_001772418.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xau:Xaut_0642 ABC transporter related YP_001772419.1 PFAM: inner-membrane translocator; KEGG: xau:Xaut_0643 inner-membrane translocator YP_001772420.1 PFAM: inner-membrane translocator; KEGG: xau:Xaut_0644 inner-membrane translocator YP_001772421.1 PFAM: Extracellular ligand-binding receptor; KEGG: xau:Xaut_0645 extracellular ligand-binding receptor YP_001772422.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; carbon monoxide dehydrogenase subunit G; KEGG: xau:Xaut_0646 (2Fe-2S)-binding domain protein YP_001772423.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: xau:Xaut_0647 molybdopterin dehydrogenase FAD-binding YP_001772424.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: xau:Xaut_0648 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding YP_001772425.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides YP_001772426.1 PFAM: regulatory protein MarR; KEGG: xau:Xaut_0651 transcriptional regulator, MarR family YP_001772427.1 PFAM: alpha/beta hydrolase fold; KEGG: mex:Mext_4268 putative alpha/beta hydrolase fold YP_001772428.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: acr:Acry_0452 major facilitator superfamily MFS_1 YP_001772429.1 Catalyzes the conversion of citrate to isocitrate YP_001772430.1 TIGRFAM: esterase, PHB depolymerase family; PFAM: putative esterase; KEGG: mex:Mext_3819 esterase, PHB depolymerase family YP_001772431.1 KEGG: mex:Mext_3818 hypothetical protein YP_001772432.1 KEGG: bra:BRADO0251 hypothetical protein YP_001772433.1 KEGG: mex:Mext_3808 hypothetical protein YP_001772435.1 KEGG: mex:Mext_0738 hypothetical protein YP_001772436.1 KEGG: gdi:GDI1813 putative cell volume regulation protein A YP_001772437.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: scl:sce3055 hypothetical protein with NDP-sugar oxidoreductase domain YP_001772439.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: ade:Adeh_1998 periplasmic sensor signal transduction histidine kinase YP_001772440.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: rpd:RPD_3789 response regulator receiver YP_001772441.1 PFAM: PRC-barrel domain protein; KEGG: sme:SMc00885 hypothetical transmembrane signal peptide protein YP_001772442.1 KEGG: nca:Noca_4376 putative integral membrane protein YP_001772443.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: rpa:RPA3054 possible transcriptional regulator, Crp/Fnr family YP_001772444.1 TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: afw:Anae109_1202 haloacid dehalogenase, type II YP_001772445.1 PFAM: glycosyl transferase group 1; Tetratricopeptide TPR_4; KEGG: mex:Mext_1373 glycosyl transferase group 1 YP_001772446.1 TIGRFAM: methyltransferase FkbM family; KEGG: mex:Mext_4516 methyltransferase FkbM family YP_001772448.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: mlo:mlr2581 hypothetical protein YP_001772449.1 KEGG: mex:Mext_2717 radical SAM domain protein YP_001772450.1 PFAM: manganese containing catalase; KEGG: mex:Mext_4224 manganese containing catalase YP_001772451.1 KEGG: mra:MRA_1459 PE-PGRS family protein YP_001772452.1 KEGG: mmu:100041170 similar to loricrin YP_001772453.1 KEGG: sco:SCO5706 probable translational initiation factor YP_001772454.1 PFAM: Surfeit locus 1 family protein; KEGG: bbt:BBta_2034 putative SURF1 family protein YP_001772455.1 TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: mex:Mext_4334 cytochrome o ubiquinol oxidase subunit IV YP_001772456.1 TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; KEGG: bbr:BB1308 cytochrome ubiquinol oxidase subunit III YP_001772457.1 KEGG: smd:Smed_4371 cytochrome o ubiquinol oxidase subunit I; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I YP_001772458.1 TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; COX aromatic rich domain protein; KEGG: mex:Mext_4337 ubiquinol oxidase, subunit II YP_001772459.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: mex:Mext_4338 putative transmembrane transporter protein YP_001772460.1 PFAM: thioesterase superfamily protein; KEGG: bbt:BBta_0932 hypothetical protein YP_001772462.1 KEGG: mex:Mext_1186 conserved hypothetical protein; putative signal peptide YP_001772463.1 KEGG: sma:SAV6022 dihydrolipoamide S-succinyltransferase YP_001772464.1 KEGG: mex:Mext_2560 phasin YP_001772465.1 KEGG: bra:BRADO3490 hypothetical protein YP_001772466.1 PFAM: protein of unknown function DUF87; KEGG: rpd:RPD_2094 protein of unknown function DUF87 YP_001772468.1 KEGG: mex:Mext_3447 hypothetical protein YP_001772469.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: mex:Mext_1805 transcriptional coactivator/pterin dehydratase YP_001772470.1 KEGG: mex:Mext_1806 putative ABC transporter periplasmic solute-binding protein YP_001772471.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_1807 binding-protein-dependent transport systems inner membrane component YP_001772472.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_1808 ABC transporter related YP_001772473.1 PFAM: beta-lactamase domain protein; KEGG: xau:Xaut_1782 beta-lactamase domain protein YP_001772474.1 TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: mex:Mext_1809 PQQ-dependent dehydrogenase, methanol/ethanol family YP_001772475.1 KEGG: mex:Mext_1810 hypothetical protein YP_001772476.1 SMART: extracellular solute-binding protein family 3; KEGG: mex:Mext_1811 extracellular solute-binding protein family 3 YP_001772477.1 KEGG: xau:Xaut_1778 hypothetical protein YP_001772478.1 KEGG: mex:Mext_1812 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK YP_001772479.1 TIGRFAM: dihydroneopterin aldolase; KEGG: mex:Mext_1813 dihydroneopterin aldolase YP_001772480.1 KEGG: mex:Mext_1814 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_001772481.1 PFAM: Sulphur oxidation protein SoxZ; KEGG: xau:Xaut_1777 sulphur oxidation protein SoxZ YP_001772482.1 PFAM: cyclase family protein; KEGG: rru:Rru_A0142 putative cyclase YP_001772483.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: mex:Mext_1822 ATP-binding region ATPase domain protein YP_001772484.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mex:Mext_1821 response regulator receiver YP_001772485.1 Required for coenzyme pyrroloquinoline quinone (PQQ) biosynthesis; probably provides the glutamate and tyrosine residues that are cross-linked and modified to form the coenzyme YP_001772486.1 Required for coenzyme pyrroloquinoline quinone (PQQ) biosynthesis; probably provides the glutamate and tyrosine residues that are cross-linked and modified to form the coenzyme YP_001772487.1 possibly involved in transport of pyrroloquinoline quinone transport YP_001772488.1 Required in the synthesis of PPQ, but its exact function is unknown YP_001772489.1 PFAM: coenzyme PQQ synthesis D; KEGG: mex:Mext_1818 coenzyme PQQ biosynthesis protein C YP_001772490.1 TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: Radical SAM domain protein; KEGG: mex:Mext_1817 coenzyme PQQ biosynthesis protein E YP_001772491.1 KEGG: mex:Mext_1816 hypothetical protein YP_001772492.1 KEGG: mex:Mext_1815 hypothetical protein YP_001772493.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: rso:RSc3335 hypothetical protein YP_001772494.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bch:Bcen2424_4790 transcriptional regulator, LysR family YP_001772495.1 TIGRFAM: formylmethanofuran dehydrogenase subunit C; PFAM: glutamate synthase alpha subunit domain protein; KEGG: mex:Mext_1824 formylmethanofuran dehydrogenase subunit C YP_001772496.1 catalyzes the transfer of a formyl group from formylmethanofuran to tetrahydromethanopterin tetrahydromethanopterin YP_001772497.1 TIGRFAM: formylmethanofuran dehydrogenase subunit A; PFAM: Amidohydrolase 3; KEGG: mex:Mext_1826 formylmethanofuran dehydrogenase subunit A YP_001772498.1 KEGG: mex:Mext_1827 tungsten-containing formylmethanofuran dehydrogenase, subunit B YP_001772499.1 TIGRFAM: beta-ribofuranosylaminobenzene 5'-phosphate synthase family; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: mex:Mext_1828 beta-ribofuranosylaminobenzene 5'-phosphate synthase family YP_001772500.1 PFAM: Methylene-tetrahydromethanopterin dehydrogenase; KEGG: mex:Mext_1829 methylene-tetrahydromethanopterin dehydrogenase YP_001772501.1 PFAM: protein of unknown function DUF201; KEGG: mex:Mext_1830 protein of unknown function DUF201 YP_001772502.1 catalyzes the reversible formation of methenyl-H(4)methanopterin from N(5)-formyl-H(4)methanopterin YP_001772503.1 TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: mex:Mext_1832 alpha-L-glutamate ligase, RimK family YP_001772504.1 PFAM: triphosphoribosyl-dephospho-CoA protein; KEGG: mex:Mext_1833 triphosphoribosyl-dephospho-CoA protein YP_001772505.1 TIGRFAM: formaldehyde-activating enzyme; PFAM: Formaldehyde-activating enzyme (Fae); KEGG: mex:Mext_1834 formaldehyde-activating enzyme YP_001772506.1 KEGG: mmw:Mmwyl1_0483 invasion associated locus B family protein YP_001772507.1 TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; GLUG domain protein; KEGG: mmw:Mmwyl1_0481 filamentous haemagglutinin family outer membrane protein YP_001772508.1 PFAM: Polypeptide-transport-associated domain protein ShlB-type; KEGG: pde:Pden_2460 polypeptide-transport-associated domain protein, ShlB-type YP_001772509.1 PFAM: histidine biosynthesis protein; KEGG: mex:Mext_1835 histidine biosynthesis protein YP_001772510.1 TIGRFAM: H4MPT-linked C1 transfer pathway protein; KEGG: mex:Mext_1836 H4MPT-linked C1 transfer pathway protein YP_001772511.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: mfa:Mfla_0665 diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains) with PAS/PAC and GAF sensor(s) YP_001772513.1 PFAM: ChaC family protein; KEGG: mex:Mext_1050 ChaC family protein YP_001772516.1 KEGG: mex:Mext_4706 hypothetical protein YP_001772517.1 KEGG: rpb:RPB_3707 hypothetical protein YP_001772518.1 KEGG: mex:Mext_3990 hypothetical protein YP_001772520.1 KEGG: xau:Xaut_2465 hypothetical protein YP_001772521.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: mex:Mext_0648 Rieske (2Fe-2S) domain protein YP_001772522.1 KEGG: mex:Mext_4369 hypothetical protein YP_001772523.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: mex:Mext_4008 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase YP_001772524.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: mex:Mext_4009 membrane protein involved in aromatic hydrocarbon degradation YP_001772525.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: mex:Mext_3093 poly(R)-hydroxyalkanoic acid synthase, class I YP_001772526.1 KEGG: mex:Mext_3092 hypothetical protein YP_001772527.1 PFAM: aminotransferase class I and II; KEGG: mex:Mext_3091 aminotransferase class I and II YP_001772528.1 KEGG: mex:Mext_3090 hypothetical protein YP_001772529.1 KEGG: mex:Mext_3089 hypothetical protein YP_001772531.1 KEGG: sus:Acid_7575 hypothetical protein YP_001772532.1 PFAM: regulatory protein MarR; KEGG: oan:Oant_3938 transcriptional regulator, MarR family YP_001772533.1 PFAM: CBS domain containing protein; Chloride channel core; KEGG: ret:RHE_PC00165 probable chloride channel protein YP_001772535.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dac:Daci_0134 cyclopropane-fatty-acyl-phospholipid synthase YP_001772536.1 PFAM: cytochrome c oxidase subunit III; KEGG: nha:Nham_4178 cytochrome c oxidase, subunit III YP_001772537.1 KEGG: nha:Nham_4179 cytochrome c oxidase, subunit I; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I YP_001772538.1 TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; KEGG: nha:Nham_4180 cytochrome c oxidase, subunit II YP_001772539.1 KEGG: nha:Nham_4181 hypothetical protein YP_001772540.1 KEGG: nha:Nham_4182 hypothetical protein YP_001772541.1 KEGG: nha:Nham_4183 hypothetical protein YP_001772542.1 KEGG: nha:Nham_4184 hypothetical protein YP_001772543.1 KEGG: mex:Mext_0218 hypothetical protein YP_001772544.1 PFAM: Polysulphide reductase NrfD; KEGG: mex:Mext_0217 polysulphide reductase NrfD YP_001772545.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mex:Mext_0216 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_001772546.1 KEGG: mex:Mext_0215 chaperone protein HtpG YP_001772547.1 PFAM: Polysulphide reductase NrfD; KEGG: rxy:Rxyl_2726 polysulphide reductase, NrfD YP_001772548.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ade:Adeh_0823 4Fe-4S ferredoxin, iron-sulfur binding protein YP_001772550.1 PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: ade:Adeh_0825 molybdopterin oxidoreductase Fe4s4 region YP_001772551.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: ade:Adeh_0824 formate dehydrogenase YP_001772553.1 KEGG: mex:Mext_0066 hypothetical protein YP_001772554.1 PFAM: Rubrerythrin; protein of unknown function DUF125 transmembrane; KEGG: rpd:RPD_3902 rubrerythrin YP_001772555.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001772556.1 KEGG: mex:Mext_2392 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_001772557.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mex:Mext_3691 dTDP-glucose 4,6-dehydratase YP_001772558.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mex:Mext_3692 dTDP-4-dehydrorhamnose reductase YP_001772559.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: mex:Mext_2395 glucose-1-phosphate thymidylyltransferase YP_001772560.1 KEGG: mex:Mext_2987 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib YP_001772561.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_001772562.1 KEGG: mex:Mext_2989 hypothetical protein YP_001772563.1 PFAM: cell wall hydrolase/autolysin; KEGG: mex:Mext_3661 N-acetylmuramoyl-L-alanine amidase YP_001772564.1 KEGG: mex:Mext_3662 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_001772566.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: mex:Mext_2982 peptide chain release factor 2 YP_001772567.1 PFAM: peptidase M23B; KEGG: mex:Mext_2983 peptidase M23B YP_001772568.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mex:Mext_2984 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_001772569.1 KEGG: mex:Mext_2985 hypothetical protein YP_001772570.1 KEGG: bbt:BBta_6246 putative exported protein of unknown function YP_001772571.1 PFAM: PfkB domain protein; KEGG: mes:Meso_3570 PfkB YP_001772572.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: mfa:Mfla_2299 transcriptional regulator, GntR family YP_001772573.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mex:Mext_2049 HAD-superfamily hydrolase, subfamily IA, variant 1 YP_001772574.1 KEGG: mex:Mext_0088 hypothetical protein YP_001772575.1 PFAM: Silent information regulator protein Sir2; KEGG: mex:Mext_2216 silent information regulator protein Sir2 YP_001772576.1 PFAM: AsmA family protein; KEGG: mex:Mext_2918 AsmA family protein YP_001772577.1 KEGG: mex:Mext_2919 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase YP_001772578.1 KEGG: mex:Mext_2920 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase YP_001772579.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3401 major facilitator superfamily MFS_1 YP_001772580.1 PFAM: luciferase family protein; KEGG: bja:blr5498 putative oxidoreductase protein YP_001772581.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_0571 binding-protein-dependent transport systems inner membrane component YP_001772582.1 PFAM: extracellular solute-binding protein family 1; KEGG: mex:Mext_0570 extracellular solute-binding protein family 1 YP_001772583.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mex:Mext_0569 ABC transporter related YP_001772584.1 KEGG: mex:Mext_2921 hypothetical protein YP_001772585.1 PFAM: glycosyl transferase family 39; KEGG: mex:Mext_4173 glycosyl transferase family 39 YP_001772586.1 PFAM: glycosyl transferase family 2; KEGG: rpa:RPA2557 glycosyl transferase, family 2 YP_001772587.1 PFAM: lipid A biosynthesis domain protein; KEGG: azc:AZC_1583 hypothetical protein YP_001772588.1 PFAM: protein of unknown function DUF302; KEGG: bbt:BBta_1896 hypothetical protein YP_001772589.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mex:Mext_4258 pyridoxamine 5'-phosphate oxidase-related FMN-binding YP_001772590.1 TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: mex:Mext_4252 cystathionine beta-lyase YP_001772591.1 TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; SMART: extracellular solute-binding protein family 3; KEGG: bra:BRADO3913 putative amino-acid ABC transporter, substrate-binding protein YP_001772592.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vpa:VP1621 amino acid ABC transporter, permease protein YP_001772593.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ppf:Pput_4426 polar amino acid ABC transporter, inner membrane subunit YP_001772594.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azc:AZC_1588 general L-amino acid ABC transporter ATP-binding protein YP_001772595.1 PFAM: Rhodanese domain protein; KEGG: mex:Mext_2568 rhodanese domain protein YP_001772597.1 PFAM: protein of unknown function DUF1328; KEGG: mex:Mext_2903 protein of unknown function DUF1328 YP_001772598.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: mex:Mext_4697 protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_001772599.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: mex:Mext_4696 type I secretion outer membrane protein, TolC family YP_001772600.1 KEGG: mex:Mext_4695 hypothetical protein YP_001772601.1 TIGRFAM: valyl-tRNA synthetase; KEGG: mex:Mext_4694 valyl-tRNA synthetase YP_001772602.1 KEGG: mex:Mext_4693 hypothetical protein YP_001772605.1 KEGG: osa:4328743 Os02g0218800 YP_001772606.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: AAA ATPase; KEGG: sme:SMa1591 putative adenylate cyclase YP_001772607.1 PFAM: protein of unknown function UPF0060; KEGG: mex:Mext_2715 protein of unknown function UPF0060 YP_001772608.1 KEGG: mex:Mext_4692 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_001772609.1 KEGG: bja:bll4862 hypothetical protein YP_001772610.1 PFAM: major facilitator superfamily MFS_1; KEGG: rpc:RPC_2478 major facilitator superfamily MFS_1 YP_001772611.1 KEGG: mex:Mext_2782 putative transmembrane protein YP_001772612.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis YP_001772613.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_001772614.1 PFAM: Septum formation initiator; KEGG: mex:Mext_2785 septum formation initiator YP_001772615.1 KEGG: mex:Mext_2786 pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit; TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit; PFAM: dehydrogenase E1 component YP_001772616.1 catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase YP_001772617.1 KEGG: mex:Mext_2788 hypothetical protein YP_001772618.1 PFAM: protein of unknown function DUF820; KEGG: mxa:MXAN_0519 hypothetical protein YP_001772619.1 KEGG: mex:Mext_2789 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein YP_001772620.1 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_001772621.1 KEGG: mex:Mext_0137 hypothetical protein YP_001772622.1 PFAM: TadE family protein; KEGG: mex:Mext_0138 TadE family protein YP_001772623.1 KEGG: bja:blr6986 putative adenylate cyclase 3 YP_001772625.1 KEGG: nha:Nham_3962 hypothetical protein YP_001772626.1 KEGG: mac:MA0970 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001772627.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mpt:Mpe_A0617 methylase involved in ubiquinone/menaquinone biosynthesis-like protein YP_001772628.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mex:Mext_2795 ErfK/YbiS/YcfS/YnhG family protein YP_001772630.1 KEGG: mex:Mext_3619 hypothetical protein YP_001772631.1 KEGG: spl:Spea_3975 hypothetical protein YP_001772634.1 KEGG: pol:Bpro_0278 putative esterase YP_001772636.1 KEGG: mlo:mlr8082 similar to circadian clock gene KaiC; PFAM: Circadian clock protein KaiC central region; KaiA binding; SMART: AAA ATPase YP_001772637.1 PFAM: HWE histidine kinase; KEGG: mlo:mlr9680 sensory transduction histidine kinase YP_001772638.1 PFAM: Transglycosylase-associated protein; KEGG: xau:Xaut_3895 transglycosylase-associated protein YP_001772639.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_001772640.1 PFAM: cyclase/dehydrase; KEGG: mex:Mext_2800 cyclase/dehydrase YP_001772641.1 PFAM: CinA domain protein; KEGG: mex:Mext_2816 CinA domain protein YP_001772642.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MECDP-synthase; KEGG: mex:Mext_2817 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_001772643.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: mex:Mext_2818 TIM-barrel protein, nifR3 family YP_001772644.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mex:Mext_2819 PAS sensor protein YP_001772645.1 KEGG: mex:Mext_2820 nitrogen regulation protein NR(I); TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001772647.1 PFAM: ROSMUCR transcriptional regulator; KEGG: xau:Xaut_1838 transcriptional regulator, MucR family YP_001772649.1 PFAM: beta-lactamase domain protein; KEGG: mex:Mext_3934 beta-lactamase domain protein YP_001772650.1 PFAM: electron transport protein SCO1/SenC; KEGG: mex:Mext_3935 electron transport protein SCO1/SenC YP_001772651.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: scl:sce5373 hypothetical protein YP_001772653.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: azc:AZC_0389 RNA polymerase ECF-type sigma factor YP_001772654.1 KEGG: mex:Mext_2822 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001772655.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: mex:Mext_2823 sigma-54 factor interaction domain-containing protein YP_001772656.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: mex:Mext_2824 RNA chaperone Hfq YP_001772657.1 TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: mex:Mext_2825 GTP-binding protein HflX YP_001772658.1 KEGG: mex:Mext_1950 hypothetical protein YP_001772659.1 KEGG: mex:Mext_4313 capsular polysaccharide biosynthesis protein-like protein YP_001772660.1 PFAM: Catalase domain protein; KEGG: mex:Mext_2314 catalase domain protein YP_001772661.1 TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: mex:Mext_3913 MazG family protein YP_001772662.1 PFAM: plasmid encoded RepA protein; KEGG: mex:Mext_3914 plasmid encoded RepA protein YP_001772663.1 KEGG: mex:Mext_3915 hypothetical protein YP_001772664.1 KEGG: mes:Meso_1193 putative phage repressor YP_001772666.1 PFAM: NGN domain protein; KEGG: mex:Mext_3997 transcription termination/antitermination factor NusG YP_001772668.1 PFAM: lipase class 3; KEGG: bam:Bamb_6262 lipase, class 3 YP_001772670.1 TIGRFAM: phage uncharacterized protein; PFAM: protein of unknown function DUF264; KEGG: nar:Saro_3004 phage uncharacterized protein-like YP_001772671.1 TIGRFAM: phage-associated protein, HI1409 family; PFAM: conserved hypothetical protein; KEGG: mlo:mlr8004 hypothetical protein YP_001772672.1 KEGG: smd:Smed_1894 hypothetical protein YP_001772673.1 KEGG: gbe:GbCGDNIH1_1580 hypothetical protein YP_001772674.1 KEGG: smd:Smed_1892 hypothetical protein YP_001772679.1 KEGG: azc:AZC_1117 hypothetical protein YP_001772680.1 KEGG: rsq:Rsph17025_1759 hypothetical protein YP_001772681.1 KEGG: smd:Smed_1323 hypothetical protein YP_001772682.1 KEGG: pde:Pden_1000 phage tape measure protein YP_001772683.1 PFAM: conserved hypothetical protein; KEGG: rsp:RSP_2476 hypothetical protein YP_001772684.1 PFAM: conserved hypothetical protein; KEGG: rpc:RPC_1822 phage conserved hypothetical protein BR0599 YP_001772685.1 PFAM: protein of unknown function DUF47; KEGG: smd:Smed_3394 protein of unknown function DUF47 YP_001772686.1 PFAM: phosphate transporter; KEGG: ret:RHE_CH00946 phosphate transporter protein YP_001772687.1 TIGRFAM: phage cell wall peptidase, NlpC/P60 family; PFAM: NLP/P60 protein; KEGG: nha:Nham_1425 putative phage cell wall peptidase, NlpC/P60 YP_001772688.1 KEGG: pla:Plav_0919 gene transfer agent (GTA) like protein YP_001772690.1 PFAM: glycoside hydrolase family 24; KEGG: mex:Mext_1416 glycoside hydrolase family 24 YP_001772692.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: mex:Mext_4566 molybdopterin-guanine dinucleotide biosynthesis protein A YP_001772693.1 KEGG: mex:Mext_4565 MRP protein-like protein YP_001772694.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rsh:Rsph17029_2674 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001772695.1 PFAM: von Willebrand factor type A; KEGG: sde:Sde_0824 arginine biosynthesis protein ArgJ YP_001772698.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: atc:AGR_C_1817 3-oxoacyl-[acyl-carrier protein] reductase YP_001772699.1 TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: mex:Mext_3289 argininosuccinate lyase YP_001772700.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mex:Mext_3288 redoxin domain protein YP_001772701.1 KEGG: reh:H16_B2375 hypothetical protein YP_001772702.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH YP_001772703.1 KEGG: mex:Mext_1048 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein YP_001772705.1 KEGG: mex:Mext_0901 glutamate--cysteine ligase; TIGRFAM: glutamate--cysteine ligase; PFAM: glutamate--cysteine ligase GCS2 YP_001772706.1 KEGG: mex:Mext_0902 hypothetical protein YP_001772707.1 PFAM: SirA family protein; KEGG: mes:Meso_2429 SirA-like YP_001772708.1 PFAM: NUDIX hydrolase; KEGG: mex:Mext_0904 NUDIX hydrolase YP_001772709.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mex:Mext_2647 ErfK/YbiS/YcfS/YnhG family protein YP_001772710.1 PFAM: protein of unknown function DUF710; KEGG: xau:Xaut_3073 protein of unknown function DUF710 YP_001772711.1 KEGG: mex:Mext_2365 hypothetical protein YP_001772712.1 KEGG: mex:Mext_2366 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_001772713.1 KEGG: mex:Mext_2367 hypothetical protein YP_001772714.1 PFAM: phosphoglycerate kinase; KEGG: mex:Mext_2368 phosphoglycerate kinase YP_001772715.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis YP_001772716.1 PFAM: thiamine monophosphate synthase; KEGG: mex:Mext_2370 thiamine monophosphate synthase YP_001772717.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: mex:Mext_2371 Sel1 domain protein repeat-containing protein YP_001772718.1 PFAM: inositol monophosphatase; KEGG: mex:Mext_0601 inositol-phosphate phosphatase YP_001772719.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_001772720.1 KEGG: sus:Acid_6197 hypothetical protein YP_001772721.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xau:Xaut_1997 GCN5-related N-acetyltransferase YP_001772722.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xau:Xaut_1996 short-chain dehydrogenase/reductase SDR YP_001772723.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: xau:Xaut_1995 NAD-dependent epimerase/dehydratase YP_001772724.1 KEGG: mex:Mext_0816 capsule polysaccharide export protein-like protein YP_001772725.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: mex:Mext_2584 ATP-binding region ATPase domain protein YP_001772726.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mex:Mext_2585 response regulator receiver YP_001772727.1 PFAM: regulatory protein MarR; KEGG: mex:Mext_2586 regulatory protein MarR YP_001772728.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_001772729.1 KEGG: mex:Mext_2588 hypothetical protein YP_001772731.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xau:Xaut_4653 transcriptional regulator, LysR family YP_001772733.1 PFAM: multi antimicrobial extrusion protein MatE; KEGG: mex:Mext_2591 multi antimicrobial extrusion protein MatE YP_001772734.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: mex:Mext_2592 potassium efflux system protein YP_001772735.1 PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_0642 putative major facilitator superfamily (MFS) transporter YP_001772736.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_001772737.1 KEGG: mex:Mext_2594 homoserine kinase; TIGRFAM: homoserine kinase; PFAM: aminoglycoside phosphotransferase YP_001772738.1 PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_4726 major facilitator superfamily MFS_1 YP_001772739.1 KEGG: mex:Mext_4727 hypothetical protein YP_001772740.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mex:Mext_1385 GntR domain protein YP_001772741.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: mex:Mext_1386 TRAP dicarboxylate transporter-DctP subunit YP_001772742.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: mex:Mext_1387 tripartite ATP-independent periplasmic transporter DctQ component YP_001772743.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: mex:Mext_1388 TRAP dicarboxylate transporter, DctM subunit YP_001772744.1 PFAM: Malonyl-CoA decarboxylase; KEGG: mex:Mext_4728 malonyl-CoA decarboxylase YP_001772745.1 catalyzes the formation of malonyl-CoA from malonate and CoA YP_001772748.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mex:Mext_3598 LysR substrate-binding YP_001772749.1 TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: mex:Mext_3600 succinate dehydrogenase, cytochrome b556 subunit YP_001772750.1 TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: mex:Mext_3601 succinate dehydrogenase, hydrophobic membrane anchor protein YP_001772751.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_001772752.1 KEGG: mex:Mext_0287 hypothetical protein YP_001772753.1 TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: mex:Mext_3604 succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_001772754.1 KEGG: mex:Mext_3605 outer membrane lipoprotein omp19 YP_001772755.1 PFAM: alanine racemase domain protein; KEGG: rpb:RPB_3203 alanine racemase-like YP_001772756.1 PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: scl:sce1885 hypothetical protein YP_001772759.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bba:Bd0447 putative dimethyladenosine transferase YP_001772760.1 PFAM: Auxin Efflux Carrier; KEGG: gur:Gura_4411 auxin efflux carrier YP_001772763.1 KEGG: mex:Mext_3606 conserved hypothetical proteinn YP_001772764.1 PFAM: GCN5-related N-acetyltransferase; KEGG: atc:AGR_C_1598 phosphinothricin N-acetyltransferase YP_001772765.1 TIGRFAM: methyltransferase; PFAM: conserved hypothetical protein; KEGG: xau:Xaut_3093 putative methyltransferase YP_001772766.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: mex:Mext_3861 RNA-binding S4 domain protein YP_001772767.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: mex:Mext_3870 CMP/dCMP deaminase zinc-binding YP_001772768.1 PFAM: alpha/beta hydrolase fold; KEGG: mex:Mext_0102 alpha/beta hydrolase fold YP_001772769.1 TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: natural resistance-associated macrophage protein; KEGG: mex:Mext_3597 Mn2+/Fe2+ transporter, NRAMP family YP_001772770.1 PFAM: transglutaminase domain protein; KEGG: mex:Mext_2611 transglutaminase domain protein YP_001772771.1 KEGG: mlo:mll6303 hypothetical protein YP_001772772.1 PFAM: alpha/beta hydrolase fold; KEGG: mex:Mext_3868 alpha/beta hydrolase fold YP_001772773.1 KEGG: mex:Mext_3871 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase YP_001772774.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_001772775.1 KEGG: mex:Mext_4465 hypothetical protein YP_001772776.1 PFAM: ferredoxin; KEGG: mex:Mext_4466 ferredoxin YP_001772777.1 PFAM: Hpt domain protein; KEGG: mex:Mext_4467 Hpt domain protein YP_001772778.1 KEGG: mex:Mext_4468 hypothetical protein YP_001772779.1 KEGG: mex:Mext_3873 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type YP_001772780.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: mex:Mext_4529 (2Fe-2S)-binding domain protein YP_001772781.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: mex:Mext_4528 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding YP_001772782.1 KEGG: mex:Mext_4527 hypothetical protein YP_001772783.1 KEGG: xau:Xaut_1484 hypothetical protein YP_001772784.1 KEGG: mex:Mext_3875 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_001772785.1 PFAM: protein of unknown function DUF1013; KEGG: mex:Mext_4278 protein of unknown function DUF1013 YP_001772786.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_001772788.1 PFAM: phosphopantetheine-binding; KEGG: rha:RHA1_ro06664 non-ribosomal peptide synthetase YP_001772789.1 PFAM: AMP-dependent synthetase and ligase; KEGG: scl:sce8262 non-ribosomal peptide synthetase YP_001772790.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: afw:Anae109_3182 radical SAM domain protein YP_001772791.1 KEGG: wsu:WS0251 hypothetical protein YP_001772792.1 KEGG: bja:bll6026 probable outer membrane protein B YP_001772793.1 KEGG: mca:MCA0623 hypothetical protein YP_001772795.1 PFAM: adenylate cyclase; KEGG: mex:Mext_3082 adenylate cyclase YP_001772796.1 PFAM: glycosyl transferase group 1; KEGG: bra:BRADO7071 putative glycosyltransferase, group 1 YP_001772797.1 PFAM: glycosyl transferase group 1; KEGG: rpe:RPE_0810 glycosyl transferase, group 1 YP_001772798.1 PFAM: polysaccharide deacetylase; KEGG: rpe:RPE_0809 polysaccharide deacetylase YP_001772799.1 PFAM: virulence factor MVIN family protein; KEGG: bra:BRADO7074 putative virulence factor MviN-like protein YP_001772800.1 KEGG: bra:BRADO7075 hypothetical protein YP_001772801.1 PFAM: glycosyl transferase group 1; KEGG: rpe:RPE_0808 glycosyl transferase, group 1 YP_001772802.1 KEGG: rpe:RPE_0807 lipopolysaccharide biosynthesis YP_001772803.1 PFAM: glycosyl transferase group 1; KEGG: bra:BRADO7078 putative glycosyl transferase, group 1 family protein YP_001772804.1 KEGG: atc:AGR_L_2559 hypothetical protein YP_001772805.1 KEGG: mex:Mext_4591 hypothetical protein YP_001772806.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: xau:Xaut_0631 magnesium-translocating P-type ATPase YP_001772807.1 KEGG: mlo:mll6593 hypothetical protein YP_001772808.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: hha:Hhal_2060 acetate kinase YP_001772809.1 PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: sil:SPO0115 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase YP_001772810.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_001772811.1 PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: xau:Xaut_2009 poly-beta-hydroxybutyrate polymerase domain protein YP_001772812.1 KEGG: sil:SPO1245 ABC transporter, permease protein YP_001772813.1 PFAM: UspA domain protein; KEGG: xau:Xaut_2353 UspA domain protein YP_001772814.1 PFAM: heat shock protein Hsp20; KEGG: mex:Mext_3498 heat shock protein HSP20 YP_001772815.1 KEGG: mlo:mll1605 hypothetical protein YP_001772816.1 TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: pde:Pden_4206 alcohol dehydrogenase GroES domain protein YP_001772817.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: mex:Mext_3505 regulatory protein Crp YP_001772818.1 PFAM: response regulator receiver; KEGG: rpd:RPD_1341 response regulator receiver YP_001772819.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: mex:Mext_3506 response regulator receiver YP_001772820.1 KEGG: mex:Mext_3507 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001772821.1 PFAM: YD repeat-containing protein; KEGG: nmu:Nmul_B2808 peptidase C39, bacteriocin processing YP_001772822.1 KEGG: bba:Bd0704 cell wall surface anchor family protein YP_001772823.1 KEGG: mva:Mvan_5886 hypothetical protein YP_001772825.1 PFAM: Radical SAM domain protein; KEGG: fal:FRAAL3572 coenzyme PQQ synthesis protein E (pyrroloquinoline quinone biosynthesis protein E) YP_001772826.1 TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: pde:Pden_2723 selenide, water dikinase YP_001772827.1 PFAM: chemotaxis sensory transducer; type IV pilus assembly PilZ; KEGG: mag:amb2517 methyl-accepting chemotaxis protein YP_001772830.1 PFAM: protein of unknown function DUF59; KEGG: bmn:BMA10247_1695 hypothetical protein YP_001772831.1 KEGG: mag:amb1262 hypothetical protein YP_001772832.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: mlo:mlr6129 transcriptional regulator YP_001772833.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pna:Pnap_1360 protein of unknown function DUF6, transmembrane YP_001772834.1 PFAM: argininosuccinate synthase; KEGG: ang:An12g01280 hypothetical protein Pfam: Asn_synthase Arginosuc_synth YP_001772835.1 KEGG: vvy:VVA0217 hypothetical protein YP_001772838.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: acr:Acry_1580 putative transcriptional regulator, Crp/Fnr family YP_001772840.1 PFAM: UspA domain protein; KEGG: mex:Mext_1355 UspA domain protein YP_001772841.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: mex:Mext_1357 cyclic nucleotide-binding YP_001772842.1 KEGG: dsh:Dshi_0715 protein of unknown function DUF465 YP_001772843.1 KEGG: nwi:Nwi_2845 outer membrane autotransporter barrel YP_001772844.1 PFAM: extracellular solute-binding protein family 1; KEGG: bja:blr4797 hypothetical protein YP_001772845.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: azc:AZC_2978 general substrate transporter YP_001772846.1 PFAM: extracellular solute-binding protein family 1; KEGG: gur:Gura_1306 extracellular solute-binding protein, family 1 YP_001772847.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xau:Xaut_2264 two component transcriptional regulator, winged helix family YP_001772848.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: xau:Xaut_2263 histidine kinase YP_001772849.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll3150 putative oxalate:formate antiporter YP_001772850.1 PFAM: protein of unknown function DUF81; KEGG: rpc:RPC_0777 protein of unknown function DUF81 YP_001772851.1 PFAM: protein of unknown function DUF606; KEGG: mex:Mext_3239 protein of unknown function DUF606 YP_001772852.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_B2701 transcriptional regulator, LysR family YP_001772853.1 PFAM: extracellular solute-binding protein family 3; KEGG: bja:blr3096 ABC transporter substrate-binding protein YP_001772854.1 PFAM: aminotransferase class V; KEGG: bja:blr3095 probable aminotransferase YP_001772855.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bja:bll3094 transcriptional regulatory protein YP_001772856.1 KEGG: ccr:CC_2729 ISCc3, transposase OrfB YP_001772857.1 KEGG: bpt:Bpet2397 hypothetical protein YP_001772858.1 KEGG: psa:PST_3160 biotin carboxylase YP_001772859.1 PFAM: protein of unknown function DUF606; KEGG: mex:Mext_4539 protein of unknown function DUF606 YP_001772861.1 KEGG: bja:bll3081 hypothetical protein YP_001772862.1 KEGG: nha:Nham_1869 hypothetical protein YP_001772863.1 PFAM: manganese and iron superoxide dismutase; KEGG: rme:Rmet_6201 manganese and iron superoxide dismutase YP_001772864.1 PFAM: protein of unknown function LppY and LpqO; KEGG: aba:Acid345_3442 protein of unknown function LppY and LpqO YP_001772865.1 KEGG: rme:Rmet_6198 hypothetical protein YP_001772866.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: mex:Mext_1475 chromate transporter, chromate ion transporter (CHR) family YP_001772867.1 SMART: Rhodanese domain protein; KEGG: rle:RL3185 putative chromate resistance protein YP_001772868.1 PFAM: ROSMUCR transcriptional regulator; KEGG: mex:Mext_4463 ROSMUCR transcriptional regulator YP_001772869.1 PFAM: Chloride channel core; KEGG: mex:Mext_3157 chloride channel core YP_001772870.1 KEGG: mex:Mext_2936 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein YP_001772872.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_1592 short-chain dehydrogenase/reductase SDR YP_001772873.1 KEGG: nha:Nham_3495 hypothetical protein YP_001772874.1 PFAM: dihydrodipicolinate synthetase; KEGG: eca:ECA4425 putative dihydrodipicolinate synthetase YP_001772875.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_001772878.1 PFAM: cell wall hydrolase SleB; KEGG: mex:Mext_2798 cell wall hydrolase SleB YP_001772879.1 KEGG: bbt:BBta_5564 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta YP_001772881.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: mlo:mlr7900 hypothetical protein YP_001772884.1 KEGG: bbt:BBta_7050 putative exported protein of unknown function YP_001772885.1 KEGG: mex:Mext_0662 translation initiation factor, aIF-2BI family; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related YP_001772887.1 KEGG: mex:Mext_4307 hypothetical protein YP_001772888.1 KEGG: mex:Mext_4306 metal-dependent phosphohydrolase HD sub domain YP_001772889.1 PFAM: methyladenine glycosylase; KEGG: mex:Mext_4305 DNA-3-methyladenine glycosylase I YP_001772890.1 KEGG: mex:Mext_2655 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase YP_001772891.1 KEGG: mex:Mext_2654 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_001772892.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: mex:Mext_2653 6-phosphogluconate dehydrogenase NAD-binding YP_001772893.1 PFAM: extracellular solute-binding protein family 3; KEGG: sme:SMc00140 putative amino-acid binding periplasmic protein YP_001772894.1 PFAM: type IV pilus assembly PilZ; KEGG: azc:AZC_3349 methyl-accepting chemotaxis sensory transducer YP_001772895.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bpt:Bpet3984 transcriptional regulator, LysR-family YP_001772896.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bpt:Bpet3983 quinone oxidoreductase YP_001772897.1 KEGG: mex:Mext_2650 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001772898.1 PFAM: protein of unknown function DUF971; KEGG: sme:SMc00145 hypothetical protein YP_001772900.1 KEGG: mex:Mext_0547 hypothetical protein YP_001772901.1 KEGG: azc:AZC_0416 putative signaling protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001772905.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:blr5870 transcriptional regulatory protein YP_001772906.1 KEGG: bbt:BBta_6488 (D)-glucarate dehydratase 1; TIGRFAM: glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing protein YP_001772907.1 PFAM: HpcH/HpaI aldolase; KEGG: azc:AZC_0555 2-dehydro-3-deoxyglucarate aldolase YP_001772908.1 KEGG: bja:blr3168 oxidoredutase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding YP_001772910.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bra:BRADO3435 putative transcriptional regulatory protein, Crp/Fnr family YP_001772911.1 PFAM: CheB methylesterase; KEGG: ret:RHE_PF00075 protein-glutamate methylesterase protein YP_001772912.1 TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase CheR-type; HWE histidine kinase; PAS fold-4 domain protein; KEGG: bra:BRADO2290 putative chemotaxis protein methyltransferase YP_001772913.1 PFAM: response regulator receiver; KEGG: mex:Mext_2557 response regulator receiver YP_001772914.1 PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mex:Mext_4631 AAA ATPase central domain protein YP_001772915.1 PFAM: Phosphoglycerate mutase; KEGG: mex:Mext_4627 phosphoglycerate mutase YP_001772916.1 KEGG: mex:Mext_4626 hypothetical protein YP_001772917.1 PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: mex:Mext_1783 protein of unknown function DUF463 YcjX family protein YP_001772918.1 PFAM: conserved hypothetical protein; KEGG: mex:Mext_1784 hypothetical protein YP_001772919.1 TIGRFAM: addiction module antidote protein, HigA family; KEGG: rpc:RPC_3187 plasmid maintenance system antidote protein, XRE family YP_001772920.1 PFAM: plasmid maintenance system killer; KEGG: rpc:RPC_3186 plasmid maintenance system killer YP_001772921.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate YP_001772922.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: ccr:CC_2403 transcriptional regulator, AraC family YP_001772923.1 PFAM: aldo/keto reductase; KEGG: bbr:BB2876 hypothetical protein YP_001772924.1 KEGG: mex:Mext_1012 putative exported protein of unknown function YP_001772925.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: mex:Mext_0666 tRNA/rRNA methyltransferase (SpoU) YP_001772926.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_0665 ABC transporter related YP_001772927.1 PFAM: SmpA/OmlA domain protein; KEGG: mex:Mext_2050 SmpA/OmlA domain protein YP_001772928.1 KEGG: mex:Mext_2051 ubiquinol-cytochrome c chaperone YP_001772929.1 KEGG: mex:Mext_2052 hypothetical protein YP_001772930.1 TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: mex:Mext_2053 fatty acid/phospholipid synthesis protein PlsX YP_001772931.1 KEGG: mex:Mext_2054 3-oxoacyl-(acyl-carrier-protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_001772932.1 TIGRFAM: integration host factor, alpha subunit; PFAM: histone family protein DNA-binding protein; KEGG: mex:Mext_2055 histone family protein DNA-binding protein YP_001772933.1 PFAM: regulatory protein MerR; KEGG: mex:Mext_2056 regulatory protein MerR YP_001772934.1 KEGG: mex:Mext_2057 hypothetical protein YP_001772936.1 KEGG: mex:Mext_2058 hypothetical protein YP_001772937.1 PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: mex:Mext_2059 PrkA AAA domain protein YP_001772938.1 PFAM: protein of unknown function DUF444; KEGG: mex:Mext_2060 protein of unknown function DUF444 YP_001772939.1 PFAM: SpoVR family protein; KEGG: mex:Mext_2061 SpoVR family protein YP_001772940.1 PFAM: protein of unknown function DUF1476; KEGG: nar:Saro_2521 protein of unknown function DUF1476 YP_001772941.1 TIGRFAM: esterase, PHB depolymerase family; PFAM: putative esterase; KEGG: bbt:BBta_5379 putative esterase, PHB depolymerase YP_001772942.1 KEGG: bja:bll4998 hypothetical protein YP_001772943.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: mex:Mext_4223 L-lactate transport YP_001772944.1 PFAM: Glutathione S-transferase domain; KEGG: azc:AZC_3266 glutathione S-transferase YP_001772945.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rle:RL1264 putative alcohol dehydrogenase YP_001772946.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mlo:mlr5541 transcriptional regulator YP_001772947.1 KEGG: xau:Xaut_2283 AAA ATPase YP_001772948.1 KEGG: mex:Mext_3113 hypothetical protein YP_001772949.1 KEGG: mex:Mext_3927 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein YP_001772950.1 KEGG: bja:blr6648 ABC transporter substrate-binding protein YP_001772951.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: mex:Mext_3928 2-polyprenylphenol 6-hydroxylase YP_001772952.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mex:Mext_3929 ubiquinone/menaquinone biosynthesis methyltransferase YP_001772954.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_001772955.1 KEGG: mex:Mext_2925 hypothetical protein YP_001772956.1 PFAM: protein of unknown function DUF502; KEGG: mex:Mext_4159 protein of unknown function DUF502 YP_001772957.1 PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: mex:Mext_2218 glycosyl transferase family 2 YP_001772962.1 KEGG: rpb:RPB_3069 hypothetical protein YP_001772963.1 PFAM: Hemolysin-type calcium-binding region; KEGG: mex:Mext_0131 hemolysin-type calcium-binding region YP_001772966.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mex:Mext_2595 redoxin domain protein YP_001772967.1 KEGG: pla:Plav_0682 hypothetical protein YP_001772968.1 PFAM: protein of unknown function DUF179; KEGG: mex:Mext_2596 protein of unknown function DUF179 YP_001772969.1 KEGG: mex:Mext_2959 hypothetical protein YP_001772970.1 KEGG: mex:Mext_2960 chaperone protein DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70 YP_001772971.1 TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: mex:Mext_2961 chaperone protein DnaJ YP_001772972.1 KEGG: mex:Mext_2962 phospholipid N-methyltransferase YP_001772973.1 PFAM: protein of unknown function DUF336; KEGG: mex:Mext_4158 protein of unknown function DUF336 YP_001772974.1 KEGG: mex:Mext_3072 conserved hypothetical protein; putative exported protein YP_001772976.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: mex:Mext_3390 rare lipoprotein A YP_001772977.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: mex:Mext_2917 serine-type D-Ala-D-Ala carboxypeptidase YP_001772978.1 PFAM: thymidylate kinase; KEGG: mex:Mext_4191 dTMP kinase YP_001772979.1 KEGG: mex:Mext_4190 DNA-directed DNA polymerase YP_001772980.1 KEGG: bcy:Bcer98_1459 hypothetical protein YP_001772981.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_2917 putative reductase YP_001772982.1 PFAM: luciferase family protein; KEGG: mex:Mext_3670 luciferase family protein YP_001772983.1 class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine YP_001772985.1 KEGG: xau:Xaut_1460 hypothetical protein YP_001772986.1 KEGG: mex:Mext_4549 hypothetical protein YP_001772988.1 KEGG: pin:Ping_0445 membrane protein involved in colicin uptake-like protein YP_001772990.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bur:Bcep18194_B0828 transcriptional regulator, GntR family with aminotransferase activity YP_001772991.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bsu:BSU05230 hypothetical protein YP_001772992.1 KEGG: mex:Mext_2318 hypothetical protein YP_001772993.1 KEGG: rrs:RoseRS_4060 hypothetical protein YP_001772994.1 PFAM: nitroreductase; KEGG: mex:Mext_2317 nitroreductase YP_001772995.1 KEGG: mex:Mext_2316 hypothetical protein YP_001772996.1 KEGG: mex:Mext_2310 hypothetical protein YP_001772997.1 KEGG: mex:Mext_2309 conserved hypothetical proteinn YP_001772998.1 PFAM: ROSMUCR transcriptional regulator; KEGG: azc:AZC_1086 putative transcriptional regulator YP_001772999.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: dsh:Dshi_1966 dihydrolipoamide dehydrogenase YP_001773000.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: dsh:Dshi_1967 catalytic domain of components of various dehydrogenase complexes YP_001773001.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_001773002.1 PFAM: protein of unknown function DUF1275; KEGG: mex:Mext_3234 protein of unknown function DUF1275 YP_001773003.1 KEGG: nha:Nham_2697 hypothetical protein YP_001773004.1 KEGG: mex:Mext_3039 hypothetical protein YP_001773006.1 KEGG: mex:Mext_4647 hypothetical protein YP_001773007.1 KEGG: mex:Mext_2633 hypothetical protein YP_001773008.1 KEGG: mex:Mext_4163 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases YP_001773009.1 PFAM: protein of unknown function DUF339; KEGG: mex:Mext_4162 protein of unknown function DUF339 YP_001773010.1 catalyzes branch migration in Holliday junction intermediates YP_001773011.1 KEGG: mex:Mext_4167 hypothetical protein YP_001773012.1 KEGG: mex:Mext_4168 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II-like protein YP_001773013.1 PFAM: Invasion associated locus B family protein; KEGG: mex:Mext_3384 invasion associated locus B family protein YP_001773014.1 TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region; KEGG: mex:Mext_3918 hemimethylated DNA binding protein YP_001773015.1 PFAM: HpcH/HpaI aldolase; KEGG: mex:Mext_3917 HpcH/HpaI aldolase YP_001773016.1 PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: esa:ESA_04130 hypothetical protein YP_001773017.1 PFAM: Patatin; KEGG: mex:Mext_3916 patatin YP_001773018.1 PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: mex:Mext_2264 phosphoribosyl-AMP cyclohydrolase YP_001773019.1 PFAM: GTP cyclohydrolase I; KEGG: mex:Mext_2265 GTP cyclohydrolase I YP_001773020.1 KEGG: mex:Mext_2266 nitrogen-fixing NifU domain protein YP_001773021.1 PFAM: protein of unknown function DUF37; KEGG: mex:Mext_2267 protein of unknown function DUF37 YP_001773022.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_001773023.1 PFAM: PhnA protein; KEGG: atc:AGR_pTi_201 PhnA protein YP_001773024.1 PFAM: NUDIX hydrolase; KEGG: bur:Bcep18194_B1502 NUDIX hydrolase YP_001773025.1 KEGG: bja:bll8086 hypothetical protein YP_001773026.1 KEGG: mex:Mext_0008 hypothetical protein YP_001773027.1 PFAM: response regulator receiver; KEGG: mex:Mext_4573 response regulator receiver YP_001773029.1 KEGG: mex:Mext_3448 hypothetical protein YP_001773030.1 PFAM: Glutathione S-transferase domain; KEGG: mex:Mext_3449 glutathione S-transferase domain YP_001773032.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: atc:AGR_L_117 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase YP_001773033.1 PFAM: MltA-interacting MipA family protein; KEGG: rpc:RPC_0793 MltA-interacting MipA YP_001773034.1 PFAM: amidinotransferase; KEGG: mex:Mext_3451 non-specific serine/threonine protein kinase YP_001773035.1 TIGRFAM: membrane protein; PFAM: conserved hypothetical protein; KEGG: mex:Mext_3452 membrane protein YP_001773036.1 KEGG: mex:Mext_3453 toluene tolerance family protein YP_001773037.1 TIGRFAM: hopanoid biosynthesis associated glycosyl transferase protein HpnI; PFAM: glycosyl transferase family 2; KEGG: mex:Mext_3454 putative glucosyltransferase YP_001773038.1 KEGG: mex:Mext_3455 hopanoid biosynthesis associated radical SAM protein HpnJ; TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnJ; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001773039.1 TIGRFAM: hopanoid biosynthesis associated protein HpnK; PFAM: YdjC family protein; KEGG: mex:Mext_3456 hopanoid biosynthesis associated protein HpnK YP_001773040.1 TIGRFAM: hopanoid biosynthesis associated RND transporter like protein HpnN; KEGG: mex:Mext_3458 hopanoid biosynthesis associated RND transporter like protein HpnN YP_001773041.1 TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: Radical SAM domain protein; KEGG: mex:Mext_3460 hopanoid biosynthesis associated radical SAM protein HpnH YP_001773042.1 KEGG: mex:Mext_3461 hypothetical protein YP_001773043.1 PFAM: protein of unknown function DUF218; KEGG: rpa:RPA3160 DUF218 YP_001773044.1 PFAM: luciferase family protein; KEGG: mex:Mext_1273 putative dehydrogenase protein YP_001773045.1 KEGG: mex:Mext_1944 squalene-hopene cyclase; TIGRFAM: squalene/oxidosqualene cyclase; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase YP_001773046.1 TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase; KEGG: mex:Mext_1943 squalene-associated FAD-dependent desaturase YP_001773047.1 TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; KEGG: mex:Mext_1942 squalene synthase HpnD YP_001773048.1 TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: mex:Mext_1941 squalene synthase HpnC YP_001773049.1 TIGRFAM: hopanoid-associated sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: mex:Mext_1940 hopanoid-associated sugar epimerase YP_001773050.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_001773051.1 KEGG: mex:Mext_1938 hypothetical protein YP_001773052.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: mex:Mext_1937 DNA/RNA non-specific endonuclease YP_001773053.1 KEGG: mex:Mext_1936 hypothetical protein YP_001773054.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_001773055.1 PFAM: polysaccharide export protein; KEGG: mex:Mext_2535 polysaccharide export protein YP_001773056.1 KEGG: mex:Mext_2131 hypothetical protein YP_001773057.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: mex:Mext_3464 Cof-like hydrolase YP_001773058.1 KEGG: mex:Mext_2533 protein tyrosine phosphatase YP_001773059.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: mex:Mext_2532 TRAP dicarboxylate transporter-DctP subunit YP_001773061.1 PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: mex:Mext_2531 deoxyribodipyrimidine photo-lyase YP_001773062.1 KEGG: rsh:Rsph17029_3809 hypothetical protein YP_001773063.1 PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mex:Mext_0275 AAA ATPase central domain protein YP_001773064.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: rru:Rru_A2329 cobyrinic acid a,c-diamide synthase YP_001773065.1 KEGG: mex:Mext_0278 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase YP_001773066.1 KEGG: osa:4347303 Os09g0463700 YP_001773067.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mex:Mext_0280 HAD-superfamily hydrolase, subfamily IA, variant 1 YP_001773068.1 PFAM: ATP12 ATPase; KEGG: mex:Mext_0281 ATP12 ATPase YP_001773070.1 PFAM: LemA family protein; KEGG: mex:Mext_2020 LemA family protein YP_001773071.1 PFAM: protein of unknown function DUF477; KEGG: mex:Mext_2019 protein of unknown function DUF477 YP_001773072.1 PFAM: protein of unknown function DUF477; KEGG: mex:Mext_2018 protein of unknown function DUF477 YP_001773074.1 PFAM: Patatin; KEGG: rms:RMA_0689 putative esterase of the alpha/beta hydrolase superfamily protein YP_001773077.1 KEGG: mex:Mext_4194 ABC transporter related; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase YP_001773078.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_4193 binding-protein-dependent transport systems inner membrane component YP_001773079.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_4192 ornithine carbamoyltransferase YP_001773080.1 KEGG: mex:Mext_0933 hypothetical protein YP_001773081.1 KEGG: mex:Mext_0932 hypothetical protein YP_001773082.1 PFAM: TadE family protein; KEGG: mex:Mext_0931 TadE family protein YP_001773083.1 PFAM: protein of unknown function DUF490; KEGG: mex:Mext_2766 protein of unknown function DUF490 YP_001773084.1 PFAM: surface antigen (D15); KEGG: mex:Mext_2765 surface antigen (D15) YP_001773085.1 PFAM: histone deacetylase superfamily; KEGG: mex:Mext_0713 histone deacetylase superfamily YP_001773087.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: mex:Mext_2976 leucyl aminopeptidase YP_001773088.1 PFAM: Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mex:Mext_2977 tetratricopeptide TPR_2 repeat protein YP_001773089.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_001773090.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: mex:Mext_4308 exodeoxyribonuclease VII, small subunit YP_001773092.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_001773093.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate YP_001773094.1 PFAM: monooxygenase FAD-binding; KEGG: sus:Acid_6736 monooxygenase, FAD-binding YP_001773095.1 PFAM: regulatory protein TetR; KEGG: rpa:RPA3791 probable transcriptional regulator, TetR family YP_001773096.1 KEGG: mex:Mext_2916 hypothetical protein YP_001773097.1 PFAM: integrase family protein; KEGG: sme:SMc02297 putative integrase/resolvase recombinase protein YP_001773098.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: mex:Mext_3182 rare lipoprotein A YP_001773099.1 KEGG: bra:BRADO5751 putative response regulator receiver (CheY-like protein) YP_001773100.1 KEGG: bhe:BH06900 anti-repressor protein YP_001773101.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bra:BRADO3435 putative transcriptional regulatory protein, Crp/Fnr family YP_001773102.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: rpa:RPA4541 DNA invertase gene RlgA YP_001773103.1 KEGG: mag:amb4049 hypothetical protein YP_001773105.1 PFAM: Integrase catalytic region; KEGG: gsu:GSU3083 ISGsu7, transposase OrfB YP_001773106.1 KEGG: gsu:GSU3082 ISGsu7, transposase OrfA YP_001773108.1 KEGG: mex:Mext_1125 hypothetical protein YP_001773110.1 PFAM: transposase IS3/IS911 family protein; KEGG: dvu:DVU2179 ISDvu2, transposase OrfA YP_001773111.1 PFAM: Integrase catalytic region; KEGG: atc:AGR_L_551 hypothetical protein YP_001773112.1 PFAM: small multidrug resistance protein; KEGG: dac:Daci_0685 small multidrug resistance protein YP_001773113.1 PFAM: response regulator receiver; KEGG: mex:Mext_1895 response regulator receiver YP_001773115.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; Peptidoglycan-binding domain 1 protein; KEGG: rpd:RPD_2423 peptidase S1 and S6, chymotrypsin/Hap YP_001773117.1 KEGG: bbt:BBta_7385 putative membrane protein of unknown function YP_001773118.1 PFAM: protein of unknown function DUF534; KEGG: bbt:BBta_p0039 putative ABC-type uncharacterized transport system, periplasmic component YP_001773119.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase HAMP region domain protein; KEGG: rle:pRL110112 putative transcriptional regulator adenylate cyclase YP_001773121.1 PFAM: CBS domain containing protein; HPP family protein?; KEGG: mex:Mext_2087 HPP family protein? YP_001773122.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ade:Adeh_2883 methyltransferase type 11 YP_001773123.1 PFAM: major facilitator superfamily MFS_1; KEGG: pde:Pden_1166 major facilitator superfamily MFS_1 YP_001773124.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pde:Pden_0940 transcriptional regulator, LysR family YP_001773125.1 catalyzes the formation of fumarate from aspartate YP_001773126.1 PFAM: sodium:dicarboxylate symporter; KEGG: rfr:Rfer_3455 sodium:dicarboxylate symporter YP_001773127.1 KEGG: mex:Mext_1113 hypothetical protein YP_001773128.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: nha:Nham_0213 sigma-24 (FecI-like) YP_001773129.1 KEGG: nha:Nham_0214 hypothetical protein YP_001773130.1 KEGG: mlo:mll8137 hypothetical protein YP_001773131.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: scl:sce9118 nitrate reductase YP_001773132.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:blr6986 putative adenylate cyclase 3 YP_001773133.1 KEGG: azc:AZC_0855 hypothetical protein YP_001773134.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: mex:Mext_1671 histidine kinase YP_001773135.1 KEGG: mex:Mext_1672 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein YP_001773136.1 KEGG: mes:Meso_3331 hypothetical protein YP_001773137.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mex:Mext_4051 PAS sensor protein YP_001773138.1 KEGG: rpd:RPD_3087 ATP-binding region, ATPase-like; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001773142.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mex:Mext_0458 RNA polymerase sigma factor, sigma-70 family YP_001773143.1 PFAM: conserved hypothetical protein; KEGG: bja:blr3189 hypothetical protein YP_001773145.1 KEGG: xau:Xaut_2671 putative sulfite:cytochrome c oxidoreductase subunit B YP_001773146.1 PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: xau:Xaut_2672 oxidoreductase molybdopterin binding YP_001773147.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bpt:Bpet0409 D-3-phosphoglycerate dehydrogenase YP_001773148.1 PFAM: Alkaline phosphatase; KEGG: ret:RHE_CH04099 alkaline phosphatase protein YP_001773149.1 KEGG: azc:AZC_2986 hypothetical protein YP_001773150.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rle:RL4711 putative ATP-binding component of ABC transporter YP_001773151.1 PFAM: protein of unknown function DUF214; KEGG: rle:RL4710 putative transmembrane transporter component YP_001773152.1 KEGG: mex:Mext_0139 hypothetical protein YP_001773157.1 PFAM: protein of unknown function DUF892; KEGG: mex:Mext_4862 protein of unknown function DUF892 YP_001773158.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: dar:Daro_2846 hypothetical protein YP_001773159.1 KEGG: mex:Mext_4185 beta-lactamase-like protein YP_001773160.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: mex:Mext_4186 hydrolase, TatD family YP_001773161.1 TIGRFAM: methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); KEGG: mex:Mext_4187 methionyl-tRNA synthetase YP_001773162.1 PFAM: cytochrome c class I; KEGG: psa:PST_0367 hypothetical protein YP_001773163.1 similr to RedA of Sinorhizobium meliloti megaplasmid 2 (unknown function; KEGG: mlo:mlr3248 similar to RedA [Sinorhizobium meliloti] megaplasmid 2 (unknown function) YP_001773164.1 PFAM: glycosyl transferase group 1; KEGG: rle:pRL110049 putative glycosyl transferase YP_001773165.1 PFAM: glycosyl transferase group 1; KEGG: mlo:mll3259 hypothetical protein YP_001773166.1 PFAM: Glycosyltransferase 28 domain; KEGG: sil:SPO0551 hypothetical protein YP_001773167.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PE00042 probable oligopeptide ABC transporter, ATP-binding protein YP_001773168.1 KEGG: osa:4324538 Os01g0496900 YP_001773169.1 PFAM: extracellular solute-binding protein family 5; KEGG: sil:SPO0560 oligopeptide ABC transporter, periplasmic oligopeptide-binding protein YP_001773170.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rde:RD1_1100 oligopeptide ABC transporter, permease protein, putative YP_001773171.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4595 binding-protein-dependent transport systems inner membrane component YP_001773173.1 KEGG: rpc:RPC_0590 hypothetical protein YP_001773174.1 PFAM: protein of unknown function DUF1508; KEGG: mex:Mext_2572 protein of unknown function DUF1508 YP_001773175.1 PFAM: peptidase S41; WD40 domain protein beta Propeller; SMART: PDZ/DHR/GLGF domain protein; KEGG: vco:VC0395_0089 tricorn protease YP_001773176.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mex:Mext_2571 DEAD/DEAH box helicase domain protein YP_001773177.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: xac:XAC1290 2-nitropropane dioxygenase YP_001773178.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pla:Plav_2711 major facilitator superfamily MFS_1 YP_001773179.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: bbt:BBta_1992 putative exported protein of unknown function YP_001773180.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: bra:BRADO2597 putative hypothetical oxidoreductase YP_001773181.1 PFAM: Extracellular ligand-binding receptor; KEGG: rpc:RPC_1695 extracellular ligand-binding receptor YP_001773182.1 PFAM: inner-membrane translocator; KEGG: rpc:RPC_1696 inner-membrane translocator YP_001773183.1 PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_1697 ABC transporter related YP_001773184.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_1698 ABC transporter related YP_001773185.1 PFAM: major facilitator superfamily MFS_1; KEGG: pde:Pden_2772 major facilitator superfamily MFS_1 YP_001773186.1 PFAM: BolA family protein; KEGG: mex:Mext_3232 BolA family protein YP_001773187.1 PFAM: heat shock protein DnaJ domain protein; KEGG: mex:Mext_3231 heat shock protein DnaJ domain protein YP_001773188.1 KEGG: mex:Mext_3230 cobalt chelatase, pCobS small subunit; TIGRFAM: cobalt chelatase, pCobS small subunit; PFAM: ATPase associated with various cellular activities AAA_5 YP_001773189.1 KEGG: mex:Mext_3229 cobalt chelatase, pCobT subunit; TIGRFAM: cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase CobT subunit; SMART: von Willebrand factor type A YP_001773190.1 KEGG: mex:Mext_4522 hypothetical protein YP_001773191.1 PFAM: transcriptional regulator domain protein; KEGG: mex:Mext_0676 transcriptional regulator domain protein YP_001773192.1 PFAM: type IV pilus assembly PilZ; KEGG: mex:Mext_0678 type IV pilus assembly PilZ YP_001773193.1 KEGG: mex:Mext_0679 hypothetical protein YP_001773194.1 KEGG: mex:Mext_0680 protein of unknown function DUF1217 YP_001773195.1 PFAM: protein of unknown function DUF1217; KEGG: mex:Mext_0680 protein of unknown function DUF1217 YP_001773196.1 PFAM: flagellar basal body rod protein; KEGG: mex:Mext_0681 flagellar basal body rod protein YP_001773197.1 involved in type III protein export during flagellum assembly YP_001773198.1 the hook connects flagellar basal body to the flagellar filament YP_001773199.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook YP_001773200.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thin flagella YP_001773201.1 acts as an activator or flagellin translation and may be required for filament secretion or assembly; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella YP_001773202.1 post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA: Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella YP_001773203.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella YP_001773204.1 FliQ, with proteins FliP and FliR, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium have one thick flagellum and several thin flagella; the proteins in this cluster are associated with the thin flagella YP_001773206.1 membrane protein involved in the flagellar export apparatus YP_001773207.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium has one thick and several thin flagella; the Bradyrhizobium protein in this cluster are associated with the thin flagella YP_001773208.1 KEGG: mex:Mext_0692 hypothetical protein YP_001773209.1 KEGG: mex:Mext_0693 hypothetical protein YP_001773210.1 KEGG: mex:Mext_0694 hypothetical protein YP_001773211.1 KEGG: mex:Mext_0695 hypothetical protein YP_001773212.1 PFAM: Heparinase II/III family protein; KEGG: mex:Mext_0617 hypothetical protein YP_001773213.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: mex:Mext_4600 thiamine pyrophosphate protein domain protein TPP-binding YP_001773214.1 KEGG: bja:bll0956 hypothetical protein YP_001773215.1 KEGG: bra:BRADO6292 conserved hypothetical protein; putative acyl carrier domain YP_001773216.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bra:BRADO6291 putative 2-succinylbenzoate--CoA ligase (OSB-CoA synthetase) (o-succinylbenzoyl-CoA synthetase) YP_001773217.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mex:Mext_4592 short-chain dehydrogenase/reductase SDR YP_001773218.1 PFAM: protein of unknown function DUF937; KEGG: mex:Mext_4053 protein of unknown function DUF937 YP_001773219.1 PFAM: Glutathione S-transferase domain; KEGG: pol:Bpro_3007 glutathione S-transferase-like YP_001773220.1 KEGG: mex:Mext_4039 hypothetical protein YP_001773221.1 PFAM: thioesterase superfamily protein; KEGG: azc:AZC_4095 acyl-CoA thioester hydrolase YP_001773222.1 PFAM: major facilitator superfamily MFS_1; KEGG: pla:Plav_3596 major facilitator superfamily MFS_1 YP_001773223.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; PAS fold domain protein; KEGG: mex:Mext_4037 PAS sensor protein YP_001773224.1 TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS III domain protein; MutS II domain protein; MutS IV domain protein; KEGG: mex:Mext_4282 DNA mismatch repair protein MutS YP_001773225.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_001773226.1 TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: mex:Mext_4076 ornithine carbamoyltransferase YP_001773227.1 TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: mex:Mext_4075 acetylornithine and succinylornithine aminotransferase YP_001773228.1 PFAM: Endoribonuclease L-PSP; KEGG: mex:Mext_4070 endoribonuclease L-PSP YP_001773229.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: mex:Mext_4069 glycerophosphoryl diester phosphodiesterase YP_001773230.1 Catalyzes the deamination of dCTP to form dUTP YP_001773231.1 protein associated with Co2+ and Mg2+ efflux YP_001773232.1 TIGRFAM: acetylornithine deacetylase (ArgE); PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: mex:Mext_0369 acetylornithine deacetylase (ArgE) YP_001773233.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sme:SMa2301 putative response regulator YP_001773234.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: acr:Acry_2082 lysine exporter protein (LysE/YggA) YP_001773235.1 PFAM: PRC-barrel domain protein; KEGG: rle:RL0913 putative PRC family protein YP_001773236.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_001773237.1 KEGG: mex:Mext_4284 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases YP_001773238.1 KEGG: mex:Mext_2129 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region YP_001773239.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_001773240.1 PFAM: conserved hypothetical protein; KEGG: mex:Mext_2126 hypothetical protein YP_001773242.1 PFAM: aminotransferase class V; KEGG: mex:Mext_1795 serine--glyoxylate transaminase YP_001773243.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: mex:Mext_1796 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding YP_001773244.1 PFAM: Shikimate/quinate 5-dehydrogenase; Methylene-tetrahydromethanopterin dehydrogenase; KEGG: mex:Mext_1797 methylenetetrahydrofolate dehydrogenase (NADP(+)) YP_001773245.1 PFAM: Formiminotransferase-cyclodeaminase; KEGG: mex:Mext_1798 formiminotransferase-cyclodeaminase YP_001773246.1 catalyzes the formation of malyl-CoA from malate and CoA YP_001773247.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_001773248.1 PFAM: phosphoenolpyruvate carboxylase; KEGG: mex:Mext_1801 phosphoenolpyruvate carboxylase YP_001773249.1 PFAM: HpcH/HpaI aldolase; KEGG: mex:Mext_1802 citrate (pro-3S)-lyase YP_001773250.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_4101 drug resistance transporter, EmrB/QacA subfamily YP_001773251.1 PFAM: secretion protein HlyD family protein; KEGG: mex:Mext_4102 secretion protein HlyD family protein YP_001773252.1 PFAM: regulatory protein TetR; KEGG: mex:Mext_4103 regulatory protein TetR YP_001773253.1 PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: xcv:XCV1322 hypothetical protein YP_001773254.1 PFAM: ATP-binding region ATPase domain protein; KEGG: nfa:nfa32130 putative sigma activity regulating kinase YP_001773255.1 PFAM: ATP-binding region ATPase domain protein; KEGG: nfa:nfa32130 putative sigma activity regulating kinase YP_001773256.1 KEGG: rca:Rcas_0676 anti-sigma-factor antagonist YP_001773257.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: fal:FRAAL1275 positive regulator of sigma-B YP_001773258.1 PFAM: cyclic nucleotide-binding; KEGG: mex:Mext_4195 cyclic nucleotide-binding YP_001773259.1 PFAM: MgtC/SapB transporter; KEGG: rpa:RPA0863 possible MgtC-magnesium transport YP_001773260.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: mex:Mext_0398 protein of unknown function DUF6 transmembrane YP_001773261.1 TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; 6-phosphogluconate dehydrogenase NAD-binding; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: sme:SMb21051 putative UDPglucoseGDPmannose dehydrogenase protein YP_001773262.1 KEGG: ddi:DDBDRAFT_0219802 hypothetical protein YP_001773263.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_4267 ABC transporter related YP_001773264.1 PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: mex:Mext_4231 peptidase M23B YP_001773265.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: mex:Mext_4232 protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_001773266.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_001773267.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001773269.1 PFAM: protein of unknown function DUF28; KEGG: mex:Mext_0982 protein of unknown function DUF28 YP_001773270.1 PFAM: ROSMUCR transcriptional regulator; KEGG: azc:AZC_1086 putative transcriptional regulator YP_001773271.1 PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: mex:Mext_2414 multicopper oxidase type 3 YP_001773272.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_001773273.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_001773274.1 binds and unfolds substrates as part of the ClpXP protease YP_001773275.1 KEGG: mex:Mext_2418 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001773276.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: mex:Mext_2373 carbohydrate kinase, YjeF related protein YP_001773277.1 PFAM: nitrogen regulatory protein P-II; KEGG: mex:Mext_2374 nitrogen regulatory protein P-II YP_001773278.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: mex:Mext_2377 glutamine synthetase, type I YP_001773279.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mex:Mext_2555 chemotaxis sensory transducer YP_001773280.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mll0994 probable transport protein YP_001773281.1 PFAM: secretion protein HlyD family protein; KEGG: bja:blr7958 multidrug resistance efflux pump YP_001773282.1 PFAM: regulatory protein TetR; KEGG: bja:blr4685 transcriptional regulatory protein YP_001773283.1 PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: mex:Mext_1220 serine-type D-Ala-D-Ala carboxypeptidase YP_001773284.1 PFAM: Radical SAM domain protein; KEGG: mex:Mext_1221 hypothetical protein YP_001773285.1 TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: mex:Mext_1225 queuosine biosynthesis protein QueD YP_001773286.1 PFAM: Negative transcriptional regulator; KEGG: spe:Spro_1466 FMN-binding negative transcriptional regulator YP_001773287.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: mex:Mext_1226 ExsB protein YP_001773288.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001773289.1 PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: azc:AZC_3340 altronate hydrolase YP_001773290.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_B1522 major facilitator superfamily (MFS) metabolite (proline/betaine)/H+ symporter YP_001773291.1 PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: mag:amb2073 DNA polymerase III epsilon subunit and related 3'-5' exonuclease YP_001773292.1 KEGG: mex:Mext_3039 hypothetical protein YP_001773293.1 PFAM: ROSMUCR transcriptional regulator; KEGG: mex:Mext_0432 ROSMUCR transcriptional regulator YP_001773294.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mex:Mext_0302 ErfK/YbiS/YcfS/YnhG family protein YP_001773295.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mex:Mext_0141 chemotaxis sensory transducer YP_001773296.1 KEGG: mex:Mext_0714 ceramide glucosyltransferase YP_001773297.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: bra:BRADO6844 putative prolyl oligopeptidase YP_001773298.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bbt:BBta_6201 putative accessory protein to ABC-type macrolide transport protein MacB YP_001773299.1 PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: dac:Daci_2316 ABC transporter related YP_001773300.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bur:Bcep18194_B1747 RND efflux system, outer membrane lipoprotein, NodT family YP_001773301.1 TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: protein synthesis factor GTP-binding; GTP-binding protein HSR1-related; KH type 2 domain protein; Miro domain protein; KEGG: mex:Mext_2275 GTP-binding protein Era YP_001773302.1 PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: mex:Mext_2274 ribonuclease III YP_001773303.1 KEGG: mex:Mext_2273 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein YP_001773304.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_001773305.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_001773306.1 PFAM: PRC-barrel domain protein; KEGG: mex:Mext_3124 PRC-barrel domain protein YP_001773307.1 PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_3123 major facilitator superfamily MFS_1 YP_001773308.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_3122 ABC transporter related YP_001773309.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: mex:Mext_2306 uracil-DNA glycosylase superfamily YP_001773310.1 PFAM: Radical SAM domain protein; KEGG: mex:Mext_2305 radical SAM domain protein YP_001773311.1 KEGG: mex:Mext_3412 hypothetical protein YP_001773312.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: mex:Mext_3251 oxidoreductase domain protein YP_001773313.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: mex:Mext_4265 DNA mismatch repair protein MutL YP_001773314.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: mex:Mext_3957 NAD-dependent epimerase/dehydratase YP_001773315.1 KEGG: cal:CaO19_4975 hyphally regulated cell wall protein YP_001773316.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: mex:Mext_4281 thiol:disulfide interchange protein, putative YP_001773317.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mpt:Mpe_A1488 hypothetical protein YP_001773318.1 KEGG: mex:Mext_1525 NUDIX hydrolase YP_001773319.1 PFAM: NUDIX hydrolase; KEGG: mex:Mext_1525 NUDIX hydrolase YP_001773320.1 PFAM: carbonic anhydrase; KEGG: azc:AZC_2766 carbonic anhydrase YP_001773321.1 KEGG: mex:Mext_3411 pyridine nucleotide-disulfide oxidoreductase family YP_001773322.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_001773323.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_001773324.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_001773325.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_001773326.1 TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: mex:Mext_1469 ATP synthase F1, delta subunit YP_001773327.1 PFAM: DSBA oxidoreductase; KEGG: mex:Mext_1504 DsbA oxidoreductase YP_001773328.1 PFAM: DSBA oxidoreductase; KEGG: mex:Mext_2292 DsbA oxidoreductase YP_001773329.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_001773330.1 KEGG: mex:Mext_0300 hypothetical protein YP_001773331.1 TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; KEGG: mex:Mext_2530 monofunctional biosynthetic peptidoglycan transglycosylase YP_001773332.1 PFAM: Polyprenyl synthetase; KEGG: mex:Mext_2529 polyprenyl synthetase YP_001773333.1 KEGG: mex:Mext_2524 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_001773334.1 PFAM: sodium/hydrogen exchanger; KEGG: mex:Mext_0940 sodium/hydrogen exchanger YP_001773335.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; dihydroorotate dehydrogenase; KEGG: bpe:BP0484 L-lactate dehydrogenase YP_001773339.1 KEGG: bra:BRADO3437 hypothetical protein YP_001773340.1 KEGG: mex:Mext_0877 hypothetical protein YP_001773342.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mex:Mext_3626 short-chain dehydrogenase/reductase SDR YP_001773343.1 KEGG: mex:Mext_2194 hypothetical protein YP_001773344.1 PFAM: protein of unknown function DUF808; KEGG: rle:RL2395 putative transmembrane protein YP_001773345.1 PFAM: glutamate--cysteine ligase GCS2; KEGG: mex:Mext_4045 glutamate--cysteine ligase GCS2 YP_001773346.1 KEGG: azc:AZC_3547 hypothetical protein YP_001773347.1 PFAM: cytochrome P450; KEGG: atc:AGR_C_2890 cytochrome P450 hydroxylase YP_001773348.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll4140 probable ABC transporter permease protein YP_001773349.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll4139 probable ABC transporter permease protein YP_001773350.1 PFAM: extracellular solute-binding protein family 1; KEGG: bja:bll4138 probable ABC transporter substrate-binding protein YP_001773351.1 PFAM: metallophosphoesterase; KEGG: bpt:Bpet0076 putative cAMP phosphodiesterase YP_001773352.1 PFAM: TPR repeat-containing protein; peptidase C14 caspase catalytic subunit p20; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bra:BRADO5923 conserved hypothetical protein with a TPR motif and a caspase domain; putative signal peptide YP_001773353.1 KEGG: ade:Adeh_0244 LigA YP_001773354.1 PFAM: GumN family protein; KEGG: ret:RHE_CH03880 hypothetical protein YP_001773355.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: bra:BRADO6925 putative HlyD family secretion protein YP_001773356.1 KEGG: bra:BRADO6923 hypothetical protein; putative RTX family exoprotein YP_001773357.1 KEGG: mex:Mext_2380 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein YP_001773358.1 PFAM: protein of unknown function DUF983; KEGG: mex:Mext_2381 protein of unknown function DUF983 YP_001773359.1 PFAM: NUDIX hydrolase; KEGG: mex:Mext_2382 NUDIX hydrolase YP_001773360.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mex:Mext_4068 chemotaxis sensory transducer YP_001773361.1 PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_4418 major facilitator superfamily MFS_1 YP_001773362.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_001773363.1 KEGG: smd:Smed_4399 hypothetical protein YP_001773364.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: mex:Mext_0967 diguanylate cyclase YP_001773365.1 PFAM: response regulator receiver; KEGG: mex:Mext_0966 response regulator receiver YP_001773366.1 KEGG: mex:Mext_0965 hypothetical protein YP_001773367.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_001773368.1 PFAM: Domain of unknown function DUF1849; KEGG: mex:Mext_4720 domain of unknown function DUF1849 YP_001773369.1 PFAM: GcrA cell cycle regulator; KEGG: mex:Mext_4719 GcrA cell cycle regulator YP_001773370.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mex:Mext_4718 phosphate regulon transcriptional regulatory protein PhoB YP_001773371.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: mex:Mext_4717 phosphate transport system regulatory protein PhoU YP_001773372.1 KEGG: mex:Mext_4716 phosphate ABC transporter, ATPase subunit; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_001773373.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_4715 phosphate ABC transporter, inner membrane subunit PstA YP_001773374.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_4714 phosphate ABC transporter, inner membrane subunit PstC YP_001773375.1 TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: mex:Mext_4713 phosphate ABC transporter, periplasmic phosphate-binding protein YP_001773376.1 KEGG: mex:Mext_4712 hypothetical protein YP_001773377.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mex:Mext_4462 RNA polymerase sigma factor, sigma-70 family YP_001773379.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: mex:Mext_2954 DNA repair protein RecN YP_001773380.1 KEGG: mex:Mext_2951 putative lipoprotein YP_001773381.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_001773382.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: mex:Mext_2949 cell division protein FtsZ YP_001773383.1 PFAM: cell division protein FtsA; KEGG: mex:Mext_2948 cell division protein FtsA YP_001773384.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: mex:Mext_2947 polypeptide-transport-associated domain protein FtsQ-type YP_001773385.1 KEGG: mex:Mext_2945 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein YP_001773386.1 KEGG: mex:Mext_2943 putative phage-related transcriptional regulator YP_001773387.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_001773388.1 PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain; KEGG: mex:Mext_2941 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase YP_001773389.1 PFAM: cell cycle protein; KEGG: mex:Mext_2940 cell cycle protein YP_001773390.1 catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; catalyzes isomerization of glucose 6-phosphate and fructose 6-phosphate YP_001773391.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate YP_001773392.1 KEGG: bbt:BBta_p0094 glucose-6-phosphate 1-dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase YP_001773393.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: mex:Mext_4827 6-phosphogluconolactonase YP_001773394.1 KEGG: azc:AZC_1070 hypothetical protein YP_001773395.1 TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: xau:Xaut_0463 cytochrome c oxidase cbb3 type accessory protein FixG YP_001773396.1 PFAM: FixH family protein; KEGG: bja:blr2768 FixH protein YP_001773397.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: bbt:BBta_2797 nitrogen fixation protein FixI YP_001773398.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: smd:Smed_5928 cytochrome oxidase maturation protein, cbb3-type YP_001773399.1 KEGG: mex:Mext_3923 metal dependent phophohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region YP_001773400.1 Represses a number of genes involved in the response to DNA damage YP_001773402.1 KEGG: mex:Mext_4523 hypothetical protein YP_001773405.1 PFAM: protein of unknown function DUF534; KEGG: bbt:BBta_p0039 putative ABC-type uncharacterized transport system, periplasmic component YP_001773406.1 PFAM: integrase family protein; KEGG: rsq:Rsph17025_0112 phage integrase family protein YP_001773407.1 PFAM: Prophage CP4-57 regulatory YP_001773409.1 KEGG: xau:Xaut_1087 AAA ATPase YP_001773412.1 KEGG: lpc:LPC_0212 hypothetical protein YP_001773413.1 KEGG: hau:Haur_0541 hypothetical protein YP_001773415.1 PFAM: Integrase catalytic region; KEGG: sen:SACE_5091 transposase YP_001773416.1 PFAM: transposase IS3/IS911 family protein; KEGG: mex:Mext_3547 transposase IS3/IS911 family protein YP_001773417.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: mlo:mll5961 transposase YP_001773418.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: nmu:Nmul_A2202 hypothetical protein YP_001773419.1 KEGG: rle:pRL70138 putative insertion sequence transposase-like protein YP_001773420.1 PFAM: CHRD domain containing protein; KEGG: nha:Nham_1308 CHRD YP_001773421.1 KEGG: bja:blr1343 hypothetical protein YP_001773422.1 PFAM: ROSMUCR transcriptional regulator; KEGG: xau:Xaut_1838 transcriptional regulator, MucR family YP_001773425.1 PFAM: ROSMUCR transcriptional regulator; KEGG: azc:AZC_1086 putative transcriptional regulator YP_001773426.1 PFAM: ROSMUCR transcriptional regulator; KEGG: mex:Mext_2438 ROSMUCR transcriptional regulator YP_001773428.1 PFAM: protein of unknown function DUF534; KEGG: bja:bll7751 hypothetical protein YP_001773429.1 PFAM: Resolvase domain; KEGG: ajs:Ajs_4249 resolvase, N-terminal domain YP_001773430.1 KEGG: mex:Mext_2857 hypothetical protein YP_001773431.1 PFAM: protein of unknown function DUF323; KEGG: mex:Mext_0792 protein of unknown function DUF323 YP_001773432.1 PFAM: sulfatase; KEGG: mex:Mext_0793 sulfatase YP_001773433.1 KEGG: mex:Mext_0531 hypothetical protein YP_001773434.1 PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: xau:Xaut_0423 protein of unknown function DUF1214 YP_001773435.1 KEGG: swi:Swit_5308 hypothetical protein YP_001773436.1 PFAM: transposase mutator type; KEGG: rpc:RPC_3939 transposase, mutator type YP_001773437.1 PFAM: monooxygenase FAD-binding; KEGG: mex:Mext_2203 monooxygenase FAD-binding YP_001773438.1 KEGG: mex:Mext_2204 hypothetical protein YP_001773439.1 KEGG: xau:Xaut_2728 protein of unknown function DUF1236 YP_001773440.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: mex:Mext_2206 methionine aminopeptidase, type I YP_001773441.1 PFAM: DNA repair protein RadC; KEGG: mex:Mext_2207 DNA repair protein RadC YP_001773442.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: mex:Mext_2208 protein of unknown function DUF404 YP_001773443.1 PFAM: protein of unknown function DUF403; KEGG: mex:Mext_2209 protein of unknown function DUF403 YP_001773444.1 PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: mex:Mext_2214 transglutaminase domain protein YP_001773446.1 KEGG: mex:Mext_2215 putative proteasome-type protease YP_001773447.1 PFAM: thiamine monophosphate synthase; KEGG: mex:Mext_0602 thiamine monophosphate synthase YP_001773448.1 PFAM: thiazole biosynthesis family protein; KEGG: mex:Mext_0603 thiazole biosynthesis family protein YP_001773449.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: mex:Mext_0604 thiamine biosynthesis protein ThiS YP_001773450.1 TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; KEGG: mex:Mext_0605 glycine oxidase ThiO YP_001773451.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: mex:Mext_0606 adenylyl cyclase class-3/4/guanylyl cyclase YP_001773452.1 KEGG: mex:Mext_1179 hypothetical protein YP_001773453.1 SMART: peptidase metallopeptidase; KEGG: mex:Mext_3516 hypothetical protein YP_001773454.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria YP_001773455.1 synthesizes RNA primers at the replication forks YP_001773456.1 PFAM: glutamine amidotransferase class-I; KEGG: mex:Mext_3437 glutamine amidotransferase class-I YP_001773457.1 KEGG: mex:Mext_4776 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_001773458.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpe:RPE_2818 TonB-dependent receptor YP_001773459.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: mex:Mext_4452 ATP-binding region ATPase domain protein YP_001773460.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: mex:Mext_4453 response regulator receiver YP_001773461.1 KEGG: bbt:BBta_5564 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta YP_001773462.1 KEGG: mag:amb3176 probable tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_001773463.1 TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: mag:amb3177 permease of the major facilitator superfamily YP_001773464.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rde:RD1_3787 transcriptional regulator, GntR family, putative YP_001773465.1 PFAM: acyltransferase 3; KEGG: rle:RL0234 exopolysaccharide production protein ExoZ YP_001773466.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: mlo:mll2240 hypothetical protein YP_001773467.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis YP_001773468.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_001773469.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_001773470.1 TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; KEGG: mex:Mext_2551 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YP_001773471.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_001773472.1 KEGG: mex:Mext_2549 hypothetical protein YP_001773473.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_001773474.1 Catalyzes the reversible phosphorolysis of 5'-deoxy-5'- methylthioadenosine (MTA) to adenine and 5-methylthio-D-ribose-1- phosphate YP_001773475.1 PFAM: cytochrome c1; KEGG: mex:Mext_2544 cytochrome c1 YP_001773476.1 PFAM: Cytochrome b/b6 domain; KEGG: mex:Mext_2543 cytochrome b/b6 domain YP_001773477.1 TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: mex:Mext_2542 ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_001773478.1 PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_3117 putative transport protein (MFS superfamily) YP_001773479.1 KEGG: mex:Mext_3162 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase YP_001773480.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: mex:Mext_3161 transcription antitermination factor NusB YP_001773481.1 KEGG: mex:Mext_3160 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein YP_001773482.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_001773483.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: gbe:GbCGDNIH1_1142 molybdopterin dependent oxidoreductase YP_001773484.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001773485.1 KEGG: mex:Mext_2714 1,4-alpha-glucan branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain YP_001773486.1 KEGG: mex:Mext_2713 trehalose synthase; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_001773487.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: mex:Mext_2712 alpha amylase catalytic region YP_001773488.1 amylomaltase; acts to release glucose from maltodextrins YP_001773489.1 KEGG: mex:Mext_2710 malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_001773490.1 KEGG: mex:Mext_1549 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_001773491.1 PFAM: protein of unknown function DUF779; KEGG: mex:Mext_3221 protein of unknown function DUF779 YP_001773492.1 PFAM: Aldehyde Dehydrogenase_; KEGG: mex:Mext_3423 aldehyde dehydrogenase YP_001773493.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: rpa:RPA1207 PAS domain:sigma-54-dependent transcriptional regulator, fis family YP_001773494.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE3 domain protein; KEGG: sme:SMa1103 probable adenylate cyclase YP_001773495.1 PFAM: protein of unknown function DUF1234; KEGG: mex:Mext_1786 protein of unknown function DUF1234 YP_001773496.1 KEGG: mex:Mext_1536 UV damage repair endonuclease YP_001773497.1 KEGG: mex:Mext_1554 hypothetical protein YP_001773498.1 KEGG: mex:Mext_1553 hypothetical protein YP_001773499.1 KEGG: mex:Mext_1552 protein of unknown function DUF1469 YP_001773500.1 KEGG: mex:Mext_1551 hypothetical protein YP_001773501.1 PFAM: glycosyl transferase family 20; KEGG: mex:Mext_1550 alpha,alpha-trehalose-phosphate synthase (UDP-forming) YP_001773502.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: atc:AGR_L_1183 hypothetical protein YP_001773503.1 PFAM: major facilitator superfamily MFS_1; KEGG: reh:H16_A1194 MFS transporter, DHA1 family YP_001773504.1 PFAM: beta-lactamase; KEGG: pau:PA14_34700 putative beta lactamase YP_001773505.1 KEGG: sal:Sala_1606 AAA family ATPase, CDC48 subfamily; TIGRFAM: AAA family ATPase, CDC48 subfamily; PFAM: AAA ATPase VAT domain protein; AAA ATPase central domain protein; cell division protein 48 CDC48 domain 2; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001773506.1 PFAM: metallophosphoesterase; KEGG: mex:Mext_2972 metallophosphoesterase YP_001773507.1 PFAM: glycosyl transferase group 1; Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: mex:Mext_2970 three-deoxy-D-manno-octulosonic-acid transferase domain protein YP_001773508.1 KEGG: mex:Mext_2969 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase YP_001773509.1 KEGG: mex:Mext_2968 hypothetical protein YP_001773510.1 PFAM: regulatory protein MarR; KEGG: mex:Mext_4235 regulatory protein MarR YP_001773511.1 KEGG: mex:Mext_4236 hypothetical protein YP_001773512.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mex:Mext_4237 enoyl-CoA hydratase/isomerase YP_001773513.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_001773514.1 KEGG: mex:Mext_4239 hypothetical protein YP_001773515.1 TIGRFAM: threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; amino acid-binding ACT domain protein; KEGG: xau:Xaut_4294 threonine dehydratase YP_001773516.1 PFAM: RDD domain containing protein; KEGG: mex:Mext_4240 RDD domain containing protein YP_001773517.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_001773519.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: bra:BRADO4942 hypothetical protein; putative CbxX/CfqX family protein (N-term) and peptidase (C-term) YP_001773521.1 TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: mex:Mext_0996 adenylosuccinate lyase YP_001773522.1 PFAM: aminotransferase class IV; KEGG: mex:Mext_0997 aminotransferase class IV YP_001773523.1 KEGG: mex:Mext_0998 hypothetical protein YP_001773524.1 PFAM: adenylosuccinate synthetase; KEGG: nwi:Nwi_2965 adenylosuccinate synthetase YP_001773525.1 KEGG: mex:Mext_1000 hypothetical protein YP_001773526.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters YP_001773527.1 KEGG: mex:Mext_1005 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase YP_001773528.1 PFAM: Glutathione S-transferase domain; KEGG: gbe:GbCGDNIH1_1353 glutathione S-transferase YP_001773529.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: bte:BTH_II0571 pectin degradation protein KdgF YP_001773530.1 KEGG: mex:Mext_0030 acyl transferase domain protein YP_001773531.1 KEGG: mex:Mext_0029 triphosphoribosyl-dephospho-CoA synthase MdcB; TIGRFAM: triphosphoribosyl-dephospho-CoA synthase MdcB; PFAM: triphosphoribosyl-dephospho-CoA protein YP_001773532.1 KEGG: mex:Mext_0028 hypothetical protein YP_001773533.1 TIGRFAM: malonate decarboxylase, gamma subunit; PFAM: malonate decarboxylase gamma subunit; KEGG: mex:Mext_0027 malonate decarboxylase, gamma subunit YP_001773534.1 The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A YP_001773535.1 acyl carrier protein of malonate decarboxylase YP_001773536.1 TIGRFAM: malonate decarboxylase, alpha subunit; KEGG: mex:Mext_0024 malonate decarboxylase, alpha subunit YP_001773537.1 TIGRFAM: malonate transporter, MadL subunit; PFAM: malonate transporter MadL subunit; KEGG: bja:blr1277 malonate carrier protein YP_001773538.1 TIGRFAM: malonate transporter, MadM subunit; PFAM: malonate/sodium symporter MadM subunit; KEGG: bja:blr1278 malonate transporter YP_001773539.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mex:Mext_0022 GntR domain protein YP_001773540.1 KEGG: mlo:mll6033 transposase YP_001773541.1 PFAM: protein of unknown function DUF1345; KEGG: rru:Rru_A1722 protein of unknown function DUF1345 YP_001773542.1 PFAM: helix-turn-helix HxlR type; KEGG: oan:Oant_2549 transcriptional regulator, HxlR family YP_001773543.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gdi:GDI0565 putative glyoxalase YP_001773544.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: sus:Acid_5224 activator of HSP90 ATPase 1 family protein YP_001773545.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: ret:RHE_CH02579 probable dihydrofolate reductase protein YP_001773546.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mex:Mext_2118 glyoxalase/bleomycin resistance protein/dioxygenase YP_001773547.1 KEGG: mex:Mext_3785 chromosome segregation ATPase-like protein YP_001773548.1 KEGG: rpa:RPA3773 hypothetical protein YP_001773549.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro02388 benzoate transporter, MFS superfamily YP_001773550.1 catalyzes the formation of catechol from phenol YP_001773551.1 PFAM: regulatory protein MarR; KEGG: bja:bll0108 transcriptional regulatory protein YP_001773555.1 KEGG: mex:Mext_3583 hypothetical protein YP_001773558.1 KEGG: gdi:GDI0301 putative transposase YP_001773559.1 KEGG: nha:Nham_3062 hypothetical protein YP_001773560.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mex:Mext_0458 RNA polymerase sigma factor, sigma-70 family YP_001773561.1 PFAM: Resolvase domain; KEGG: oan:Oant_3278 resolvase domain protein YP_001773571.1 PFAM: ROSMUCR transcriptional regulator; KEGG: xau:Xaut_2239 transcriptional regulator, MucR family YP_001773572.1 KEGG: mex:Mext_2197 hypothetical protein YP_001773573.1 KEGG: mex:Mext_0875 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein YP_001773574.1 KEGG: mex:Mext_0731 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001773575.1 KEGG: nwi:Nwi_1257 hypothetical protein YP_001773576.1 KEGG: mex:Mext_3697 transposase and inactivated derivatives-like protein YP_001773577.1 KEGG: mex:Mext_3698 putative insertion sequence transposase protein YP_001773581.1 PFAM: transposase IS4 family protein; KEGG: ret:RHE_PA00092 probable insertion sequence transposase protein, IS4 family YP_001773582.1 KEGG: sme:SMc01182 hypothetical protein YP_001773583.1 PFAM: protein of unknown function DUF534; KEGG: rle:pRL110111 hypothetical protein YP_001773584.1 PFAM: Resolvase domain; KEGG: bja:bll5010 putative resolvase YP_001773585.1 PFAM: Integrase catalytic region; KEGG: sen:SACE_5091 transposase YP_001773586.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: ret:RHE_PA00078 putative insertion sequence ATP-binding protein, IS21 family YP_001773587.1 PFAM: Integrase catalytic region; KEGG: swi:Swit_5106 integrase, catalytic region YP_001773588.1 KEGG: jan:Jann_2898 hypothetical protein YP_001773591.1 PFAM: Prophage CP4-57 regulatory; KEGG: nha:Nham_2156 putative transcriptional regulator YP_001773592.1 PFAM: integrase family protein; KEGG: nha:Nham_2157 phage integrase YP_001773594.1 KEGG: dsh:Dshi_0108 hypothetical protein YP_001773595.1 PFAM: GYD family protein; KEGG: ret:RHE_CH02949 hypothetical protein YP_001773596.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: mex:Mext_3505 regulatory protein Crp YP_001773597.1 KEGG: mex:Mext_1356 cytochrome c class I YP_001773598.1 PFAM: natural resistance-associated macrophage protein; KEGG: bxe:Bxe_C0750 Mn2+/Fe2+ transporter, NRAMP family YP_001773600.1 PFAM: glycosyl transferase group 1; KEGG: aae:aq_1080 hypothetical protein YP_001773601.1 KEGG: ter:Tery_1488 hypothetical protein YP_001773602.1 KEGG: cya:CYA_1012 macrocin-O-methyltransferase domain protein YP_001773604.1 KEGG: mex:Mext_4555 hypothetical protein YP_001773606.1 TIGRFAM: methyltransferase FkbM family; KEGG: azc:AZC_3004 methyltransferase YP_001773607.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: mex:Mext_3180 A/G-specific adenine glycosylase YP_001773608.1 PFAM: protein of unknown function DUF1159; KEGG: mex:Mext_3178 protein of unknown function DUF1159 YP_001773609.1 PFAM: DSBA oxidoreductase; KEGG: mex:Mext_3177 DsbA oxidoreductase YP_001773610.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: xau:Xaut_1981 chromosome segregation protein SMC YP_001773611.1 KEGG: mex:Mext_3176 conserved hypothetical proteinn YP_001773612.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_001773613.1 PFAM: H+transporting two-sector ATPase C subunit; KEGG: mex:Mext_3174 H+transporting two-sector ATPase C subunit YP_001773614.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: mex:Mext_3173 H+transporting two-sector ATPase B/B' subunit YP_001773615.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: mex:Mext_3172 H+transporting two-sector ATPase B/B' subunit YP_001773617.1 PFAM: alpha/beta hydrolase fold; KEGG: mex:Mext_0377 alpha/beta hydrolase fold YP_001773618.1 TIGRFAM: methyltransferase FkbM family; KEGG: mex:Mext_0376 methyltransferase FkbM family YP_001773619.1 PFAM: sugar fermentation stimulation protein; KEGG: mex:Mext_0375 sugar fermentation stimulation protein YP_001773620.1 PFAM: molybdopterin binding domain; KEGG: mex:Mext_0374 molybdopterin binding domain YP_001773621.1 catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively YP_001773622.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mex:Mext_1014 short-chain dehydrogenase/reductase SDR YP_001773623.1 PFAM: cytochrome c class I; KEGG: bbt:BBta_2764 putative cytochrome c, putative SoxX protein YP_001773624.1 with SoxZ catalyzes the oxidation of sulfur compounds YP_001773625.1 PFAM: Sulphur oxidation protein SoxZ; KEGG: bja:bll2733 probable sulfur oxidation protein YP_001773626.1 KEGG: bra:BRADO2408 putative diheme cytochrome c; sulfur oxidizing protein SoxA YP_001773627.1 KEGG: bbt:BBta_4085 nitrile hydratase subunit alpha (nitrilase) (NHase); TIGRFAM: nitrile hydratase, alpha subunit; PFAM: Nitrile hydratase alpha chain YP_001773628.1 PFAM: nitrile hydratase beta subunit; KEGG: mlo:mll1423 nitrile hydratase beta subunit YP_001773629.1 KEGG: ret:RHE_CH02781 hypothetical protein YP_001773630.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_001773631.1 TIGRFAM: agmatinase; PFAM: Oxidoreductase domain; Arginase/agmatinase/formiminoglutamase; KEGG: mex:Mext_3924 agmatinase