-- dump date 20140619_144917 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_112542.1 53802710 3103716 44..1921 1 NC_002977.6 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 1921 gidA 3103716 gidA Methylococcus capsulatus str. Bath tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_112542.1 44 D 243233 CDS YP_112543.1 53802709 3103227 1936..2553 1 NC_002977.6 identified by similarity to SP:P17113; match to protein family HMM PF02527; match to protein family HMM TIGR00138; glucose-inhibited division protein B 2553 gidB 3103227 gidB Methylococcus capsulatus str. Bath glucose-inhibited division protein B YP_112543.1 1936 D 243233 CDS YP_112544.1 53802708 3103531 2554..3342 1 NC_002977.6 identified by match to protein family HMM PF01656; ParA family protein 3342 3103531 MCA0003 Methylococcus capsulatus str. Bath ParA family protein YP_112544.1 2554 D 243233 CDS YP_112545.1 53802707 3104305 3364..4212 1 NC_002977.6 identified by similarity to SP:P26497; match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB family protein 4212 3104305 MCA0004 Methylococcus capsulatus str. Bath ParB family protein YP_112545.1 3364 D 243233 CDS YP_112546.1 53802706 3102651 4268..4639 1 NC_002977.6 identified by similarity to SP:P25760; match to protein family HMM PF03899; ATP synthase I 4639 3102651 MCA0005 Methylococcus capsulatus str. Bath ATP synthase I YP_112546.1 4268 D 243233 CDS YP_112547.1 53802705 3102513 4667..5446 1 NC_002977.6 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 5446 atpB-1 3102513 atpB-1 Methylococcus capsulatus str. Bath ATP synthase F0F1 subunit A YP_112547.1 4667 D 243233 CDS YP_112548.1 53802704 3104954 5502..5747 1 NC_002977.6 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C 5747 atpE-1 3104954 atpE-1 Methylococcus capsulatus str. Bath ATP synthase F0F1 subunit C YP_112548.1 5502 D 243233 CDS YP_112549.1 53802695 3103660 5810..6283 1 NC_002977.6 identified by similarity to SP:P00859; match to protein family HMM PF00430; match to protein family HMM TIGR01144; ATP synthase F0 subunit B 6283 atpF 3103660 atpF Methylococcus capsulatus str. Bath ATP synthase F0 subunit B YP_112549.1 5810 D 243233 CDS YP_112550.1 53802694 3103811 6290..6826 1 NC_002977.6 identified by similarity to SP:P00831; match to protein family HMM PF00213; match to protein family HMM TIGR01145; ATP synthase F1 subunit delta 6826 atpH 3103811 atpH Methylococcus capsulatus str. Bath ATP synthase F1 subunit delta YP_112550.1 6290 D 243233 CDS YP_112551.1 53802693 3104176 6842..8383 1 NC_002977.6 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 8383 atpA-1 3104176 atpA-1 Methylococcus capsulatus str. Bath ATP synthase F0F1 subunit alpha YP_112551.1 6842 D 243233 CDS YP_112552.1 53802692 3104702 8394..9257 1 NC_002977.6 identified by similarity to SP:P00837; match to protein family HMM PF00231; match to protein family HMM TIGR01146; ATP synthase F1 subunit gamma 9257 atpG-1 3104702 atpG-1 Methylococcus capsulatus str. Bath ATP synthase F1 subunit gamma YP_112552.1 8394 D 243233 CDS YP_112553.1 53802691 3103591 9293..10675 1 NC_002977.6 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 10675 atpD-1 3103591 atpD-1 Methylococcus capsulatus str. Bath ATP synthase F0F1 subunit beta YP_112553.1 9293 D 243233 CDS YP_112554.1 53802690 3103663 10701..11123 1 NC_002977.6 identified by similarity to SP:P00832; match to protein family HMM PF00401; match to protein family HMM PF02823; match to protein family HMM TIGR01216; ATP synthase F1 subunit epsilon 11123 atpC-1 3103663 atpC-1 Methylococcus capsulatus str. Bath ATP synthase F1 subunit epsilon YP_112554.1 10701 D 243233 CDS YP_112555.1 53802689 3102609 11242..12627 1 NC_002977.6 identified by similarity to SP:P17114; match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM TIGR01173; UDP-N-acetylglucosamine pyrophosphorylase 12627 glmU 3102609 glmU Methylococcus capsulatus str. Bath UDP-N-acetylglucosamine pyrophosphorylase YP_112555.1 11242 D 243233 CDS YP_112556.1 53802680 3104608 12615..14447 1 NC_002977.6 identified by similarity to SP:P17169; match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135; glucosamine--fructose-6-phosphate aminotransferase 14447 glmS 3104608 glmS Methylococcus capsulatus str. Bath glucosamine--fructose-6-phosphate aminotransferase YP_112556.1 12615 D 243233 CDS YP_112557.1 53802679 3102580 14534..16618 1 NC_002977.6 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 16618 metG 3102580 metG Methylococcus capsulatus str. Bath methionyl-tRNA synthetase YP_112557.1 14534 D 243233 CDS YP_112558.1 53802678 3102887 16626..17981 1 NC_002977.6 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 17981 bioA 3102887 bioA Methylococcus capsulatus str. Bath adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_112558.1 16626 D 243233 CDS YP_112559.1 53802677 3102640 17988..18719 1 NC_002977.6 identified by match to protein family HMM PF04452; match to protein family HMM TIGR00046; hypothetical protein 18719 3102640 MCA0018 Methylococcus capsulatus str. Bath hypothetical protein YP_112559.1 17988 D 243233 CDS YP_112560.1 53802676 3104337 18756..19217 1 NC_002977.6 identified by similarity to OMNI:NTL03PA01045; hypothetical protein 19217 3104337 MCA0019 Methylococcus capsulatus str. Bath hypothetical protein YP_112560.1 18756 D 243233 CDS YP_112561.1 53802675 3102559 complement(19221..20051) 1 NC_002977.6 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 20051 djlA 3102559 djlA Methylococcus capsulatus str. Bath Dna-J like membrane chaperone protein YP_112561.1 19221 R 243233 CDS YP_112562.1 53802674 3105016 20139..21032 1 NC_002977.6 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 21032 purC 3105016 purC Methylococcus capsulatus str. Bath phosphoribosylaminoimidazolesuccinocarboxamide synthase YP_112562.1 20139 D 243233 CDS YP_112563.1 53802666 3102667 complement(21053..22330) 1 NC_002977.6 identified by similarity to SP:P06961; match to protein family HMM PF01743; match to protein family HMM PF01966; tRNA nucleotidyltransferase 22330 cca 3102667 cca Methylococcus capsulatus str. Bath tRNA nucleotidyltransferase YP_112563.1 21053 R 243233 CDS YP_112564.1 53802665 3103683 22396..23280 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00341; match to protein family HMM PF01925; hypothetical protein 23280 3103683 MCA0023 Methylococcus capsulatus str. Bath hypothetical protein YP_112564.1 22396 D 243233 CDS YP_112565.1 53802664 3103654 complement(23287..23994) 1 NC_002977.6 identified by similarity to GP:4558604; match to protein family HMM TIGR01198; 6-phosphogluconolactonase 23994 pgl-1 3103654 pgl-1 Methylococcus capsulatus str. Bath 6-phosphogluconolactonase YP_112565.1 23287 R 243233 CDS YP_112566.1 53802663 3102311 complement(23996..25483) 1 NC_002977.6 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 25483 zwf-1 3102311 zwf-1 Methylococcus capsulatus str. Bath glucose-6-phosphate 1-dehydrogenase YP_112566.1 23996 R 243233 CDS YP_112567.1 53802662 3102063 complement(25693..28341) 1 NC_002977.6 identified by similarity to SP:P08764; match to protein family HMM PF04851; type III restriction-modification system, R subunit 28341 3102063 MCA0026 Methylococcus capsulatus str. Bath type III restriction-modification system, R subunit YP_112567.1 25693 R 243233 CDS YP_112568.1 53802661 3102403 complement(28538..29773) 1 NC_002977.6 identified by match to protein family HMM PF00872; ISMca5, transposase 29773 3102403 MCA0027 Methylococcus capsulatus str. Bath ISMca5, transposase YP_112568.1 28538 R 243233 CDS YP_112569.1 53802660 3103672 complement(29878..30168) 1 NC_002977.6 identified by similarity to GP:19913854; match to protein family HMM PF01909; nucleotidyltransferase 30168 3103672 MCA0028 Methylococcus capsulatus str. Bath nucleotidyltransferase YP_112569.1 29878 R 243233 CDS YP_112570.1 53802651 3103808 complement(30165..30551) 1 NC_002977.6 identified by similarity to OMNI:NMB1852; match to protein family HMM PF04480; hypothetical protein 30551 3103808 MCA0029 Methylococcus capsulatus str. Bath hypothetical protein YP_112570.1 30165 R 243233 CDS YP_112571.1 53802799 3103937 32445..32984 1 NC_002977.6 identified by similarity to OMNI:PG0277; ISMca6, transposase, OrfA 32984 3103937 MCA0031 Methylococcus capsulatus str. Bath ISMca6, transposase, OrfA YP_112571.1 32445 D 243233 CDS YP_112572.1 53802798 3104102 32956..33549 1 NC_002977.6 identified by similarity to OMNI:PG0277; ISMca6, transposase, OrfB 33549 3104102 MCA0032 Methylococcus capsulatus str. Bath ISMca6, transposase, OrfB YP_112572.1 32956 D 243233 CDS YP_112573.1 53802797 3102996 complement(33699..34586) 1 NC_002977.6 identified by similarity to SP:P23840; DNA-damage-inducible protein D 34586 dinD 3102996 dinD Methylococcus capsulatus str. Bath DNA-damage-inducible protein D YP_112573.1 33699 R 243233 CDS YP_112574.1 53802796 3103223 complement(34606..35553) 1 NC_002977.6 hypothetical protein 35553 3103223 MCA0034 Methylococcus capsulatus str. Bath hypothetical protein YP_112574.1 34606 R 243233 CDS YP_112575.1 53802795 3104338 complement(35550..36155) 1 NC_002977.6 hypothetical protein 36155 3104338 MCA0035 Methylococcus capsulatus str. Bath hypothetical protein YP_112575.1 35550 R 243233 CDS YP_112576.1 53802794 3104322 complement(36152..37243) 1 NC_002977.6 hypothetical protein 37243 3104322 MCA0036 Methylococcus capsulatus str. Bath hypothetical protein YP_112576.1 36152 R 243233 CDS YP_112577.1 53802793 3103171 38085..39914 1 NC_002977.6 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 39914 edd 3103171 edd Methylococcus capsulatus str. Bath phosphogluconate dehydratase YP_112577.1 38085 D 243233 CDS YP_112578.1 53802784 3104233 39904..40569 1 NC_002977.6 identified by similarity to SP:P10177; match to protein family HMM PF01081; match to protein family HMM TIGR01182; 4-hydroxy-2-ketovalerate aldolase 40569 eda 3104233 eda Methylococcus capsulatus str. Bath 4-hydroxy-2-ketovalerate aldolase YP_112578.1 39904 D 243233 CDS YP_112579.1 53802783 3104088 40860..41498 1 NC_002977.6 identified by similarity to OMNI:NTL02ML4093; match to protein family HMM PF02734; dihydroxyacetone phosphatase 41498 3104088 MCA0039 Methylococcus capsulatus str. Bath dihydroxyacetone phosphatase YP_112579.1 40860 D 243233 CDS YP_112580.1 53802782 3104091 complement(41511..42500) 1 NC_002977.6 identified by similarity to OMNI:NTL02ML4088; match to protein family HMM PF02733; dihydroxyacetone kinase 42500 3104091 MCA0040 Methylococcus capsulatus str. Bath dihydroxyacetone kinase YP_112580.1 41511 R 243233 CDS YP_112581.1 53802781 3104315 complement(42530..43546) 1 NC_002977.6 identified by similarity to OMNI:NTL01BH3849; match to protein family HMM PF01408; match to protein family HMM PF02894; Gfo/Idh/MocA family oxidoreductase 43546 3104315 MCA0041 Methylococcus capsulatus str. Bath Gfo/Idh/MocA family oxidoreductase YP_112581.1 42530 R 243233 CDS YP_112582.1 53802780 3103930 43745..44251 1 NC_002977.6 identified by similarity to SP:Q9BGI1; match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein 44251 3103930 MCA0042 Methylococcus capsulatus str. Bath anti-oxidant AhpCTSA family protein YP_112582.1 43745 D 243233 CDS YP_112583.1 53802779 3103899 44293..44721 1 NC_002977.6 identified by similarity to SP:P37351; match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120; ribose 5-phosphate isomerase B 44721 rpiB 3103899 rpiB Methylococcus capsulatus str. Bath ribose 5-phosphate isomerase B YP_112583.1 44293 D 243233 CDS YP_112584.1 53802778 3103384 44934..45155 1 NC_002977.6 identified by similarity to GP:17132485; hypothetical protein 45155 3103384 MCA0044 Methylococcus capsulatus str. Bath hypothetical protein YP_112584.1 44934 D 243233 CDS YP_112585.1 53802777 3104052 complement(45165..45833) 1 NC_002977.6 Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures; endonuclease V 45833 3104052 MCA0045 Methylococcus capsulatus str. Bath endonuclease V YP_112585.1 45165 R 243233 CDS YP_112586.1 53802767 3103304 complement(45837..46625) 1 NC_002977.6 identified by similarity to OMNI:CC1747; match to protein family HMM PF03819; match to protein family HMM TIGR00444; MazG family protein 46625 3103304 MCA0046 Methylococcus capsulatus str. Bath MazG family protein YP_112586.1 45837 R 243233 CDS YP_112587.1 53802766 3103486 complement(46628..47560) 1 NC_002977.6 identified by match to protein family HMM PF00294; carbohydrate kinase 47560 3103486 MCA0047 Methylococcus capsulatus str. Bath carbohydrate kinase YP_112587.1 46628 R 243233 CDS YP_112588.1 53802765 3104297 complement(47616..47978) 1 NC_002977.6 identified by similarity to SP:P00556; match to protein family HMM PF01219; diacylglycerol kinase 47978 dgkA 3104297 dgkA Methylococcus capsulatus str. Bath diacylglycerol kinase YP_112588.1 47616 R 243233 CDS YP_112589.1 53802764 3103006 48224..50446 1 NC_002977.6 identified by match to protein family HMM PF00553; cellulose-binding domain-containing protein 50446 3103006 MCA0049 Methylococcus capsulatus str. Bath cellulose-binding domain-containing protein YP_112589.1 48224 D 243233 CDS YP_112590.1 53802763 3103650 complement(50597..51697) 1 NC_002977.6 identified by match to protein family HMM PF01609; ISMca1, transposase 51697 3103650 MCA0050 Methylococcus capsulatus str. Bath ISMca1, transposase YP_112590.1 50597 R 243233 CDS YP_112591.1 53802762 3103108 complement(51863..52246) 1 NC_002977.6 identified by similarity to SP:P23884; match to protein family HMM PF01597; match to protein family HMM TIGR00527; glycine cleavage system H protein 52246 gcvH 3103108 gcvH Methylococcus capsulatus str. Bath glycine cleavage system H protein YP_112591.1 51863 R 243233 CDS YP_112592.1 53802761 3103568 52436..53521 1 NC_002977.6 identified by similarity to SP:P21590; match to protein family HMM PF01883; mrP protein 53521 3103568 MCA0052 Methylococcus capsulatus str. Bath mrP protein YP_112592.1 52436 D 243233 CDS YP_112593.1 53802760 3103476 53532..54098 1 NC_002977.6 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 54098 dcd 3103476 dcd Methylococcus capsulatus str. Bath deoxycytidine triphosphate deaminase YP_112593.1 53532 D 243233 CDS YP_112594.1 53802751 3103970 54127..55407 1 NC_002977.6 identified by similarity to SP:P23893; match to protein family HMM PF00202; match to protein family HMM TIGR00713; glutamate-1-semialdehyde-2,1-aminomutase 55407 hemL 3103970 hemL Methylococcus capsulatus str. Bath glutamate-1-semialdehyde-2,1-aminomutase YP_112594.1 54127 D 243233 CDS YP_112595.1 53802750 3103906 55404..57329 1 NC_002977.6 identified by match to protein family HMM PF00597; DedA family protein 57329 3103906 MCA0055 Methylococcus capsulatus str. Bath DedA family protein YP_112595.1 55404 D 243233 CDS YP_112596.1 53802749 3104250 complement(57326..58582) 1 NC_002977.6 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 58582 rho 3104250 rho Methylococcus capsulatus str. Bath transcription termination factor Rho YP_112596.1 57326 R 243233 CDS YP_112597.1 53802748 3103609 complement(58769..59098) 1 NC_002977.6 identified by similarity to SP:P00274; match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 59098 trxA-1 3103609 trxA-1 Methylococcus capsulatus str. Bath thioredoxin YP_112597.1 58769 R 243233 CDS YP_112598.1 53802747 3103625 complement(59262..60029) 1 NC_002977.6 identified by similarity to SP:Q59601; match to protein family HMM PF01553; 1-acyl-sn-glycerol-3-phosphate acyltransferase 60029 3103625 MCA0058 Methylococcus capsulatus str. Bath 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_112598.1 59262 R 243233 CDS YP_112599.1 53802746 3103267 complement(60004..60780) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04351; hypothetical protein 60780 3103267 MCA0059 Methylococcus capsulatus str. Bath hypothetical protein YP_112599.1 60004 R 243233 CDS YP_112600.1 53802745 3103026 complement(60908..61717) 1 NC_002977.6 identified by similarity to OMNI:VC2444; general secretion pathway protein B 61717 3103026 MCA0060 Methylococcus capsulatus str. Bath general secretion pathway protein B YP_112600.1 60908 R 243233 CDS YP_112601.1 53802744 3103088 complement(61739..63388) 1 NC_002977.6 identified by similarity to SP:P45754; match to protein family HMM PF01471; general secretion pathway protein A 63388 exeA 3103088 exeA Methylococcus capsulatus str. Bath general secretion pathway protein A YP_112601.1 61739 R 243233 CDS YP_112602.1 53802735 3104869 complement(63501..64397) 1 NC_002977.6 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 64397 3104869 MCA0062 Methylococcus capsulatus str. Bath protoheme IX farnesyltransferase YP_112602.1 63501 R 243233 CDS YP_112603.1 53802734 3102450 64477..65856 1 NC_002977.6 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 65856 3102450 MCA0063 Methylococcus capsulatus str. Bath M16 family peptidase YP_112603.1 64477 D 243233 CDS YP_112604.1 53802733 3102554 65846..67171 1 NC_002977.6 identified by match to protein family HMM PF05193; hypothetical protein 67171 3102554 MCA0064 Methylococcus capsulatus str. Bath hypothetical protein YP_112604.1 65846 D 243233 CDS YP_112605.1 53802732 3102473 67161..67727 1 NC_002977.6 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; methyltransferase 67727 3102473 MCA0065 Methylococcus capsulatus str. Bath methyltransferase YP_112605.1 67161 D 243233 CDS YP_112606.1 53802731 3103520 67724..68212 1 NC_002977.6 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01510; pantetheine-phosphate adenylyltransferase 68212 coaD 3103520 coaD Methylococcus capsulatus str. Bath pantetheine-phosphate adenylyltransferase YP_112606.1 67724 D 243233 CDS YP_112607.1 53802730 3104893 complement(68235..70733) 1 NC_002977.6 identified by similarity to SP:P11217; match to protein family HMM PF00343; match to protein family HMM TIGR02093; glycogen phosphorylase 70733 glgP-1 3104893 glgP-1 Methylococcus capsulatus str. Bath glycogen phosphorylase YP_112607.1 68235 R 243233 CDS YP_112608.1 53802729 3103736 complement(70801..71184) 1 NC_002977.6 polyphosphate kinase 71184 3103736 MCA0068 Methylococcus capsulatus str. Bath polyphosphate kinase YP_112608.1 70801 R 243233 CDS YP_112609.1 53802728 3103109 71264..71794 1 NC_002977.6 hypothetical protein 71794 3103109 MCA0069 Methylococcus capsulatus str. Bath hypothetical protein YP_112609.1 71264 D 243233 CDS YP_112610.1 53802719 3102049 71806..73416 1 NC_002977.6 identified by match to protein family HMM PF02690; Na/Pi-cotransporter family protein 73416 3102049 MCA0070 Methylococcus capsulatus str. Bath Na/Pi-cotransporter family protein YP_112610.1 71806 D 243233 CDS YP_112611.1 53802718 3105039 complement(73668..74252) 1 NC_002977.6 identified by match to protein family HMM PF01871; match to protein family HMM TIGR00296; hypothetical protein 74252 3105039 MCA0071 Methylococcus capsulatus str. Bath hypothetical protein YP_112611.1 73668 R 243233 CDS YP_112612.1 53802717 3103347 complement(74221..75024) 1 NC_002977.6 identified by similarity to SP:O67039; match to protein family HMM PF01875; hypothetical protein 75024 3103347 MCA0072 Methylococcus capsulatus str. Bath hypothetical protein YP_112612.1 74221 R 243233 CDS YP_112613.1 53802716 3103968 75126..76223 1 NC_002977.6 identified by similarity to OMNI:MT3225; match to protein family HMM PF04055; pyruvate formate lyase-activating enzyme 76223 3103968 MCA0073 Methylococcus capsulatus str. Bath pyruvate formate lyase-activating enzyme YP_112613.1 75126 D 243233 CDS YP_112614.1 53802715 3102765 76264..76875 1 NC_002977.6 identified by similarity to SP:P39100; match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase 76875 gst 3102765 gst Methylococcus capsulatus str. Bath glutathione S-transferase YP_112614.1 76264 D 243233 CDS YP_112615.1 53802714 3104792 76932..77942 1 NC_002977.6 identified by match to protein family HMM PF01764; lipase 77942 3104792 MCA0075 Methylococcus capsulatus str. Bath lipase YP_112615.1 76932 D 243233 CDS YP_112616.1 53802713 3104372 78087..79778 1 NC_002977.6 patatin family protein 79778 3104372 MCA0076 Methylococcus capsulatus str. Bath patatin family protein YP_112616.1 78087 D 243233 CDS YP_112617.1 53802712 3103592 79817..80146 1 NC_002977.6 identified by similarity to GP:17427297; hypothetical protein 80146 3103592 MCA0077 Methylococcus capsulatus str. Bath hypothetical protein YP_112617.1 79817 D 243233 CDS YP_112618.1 53802703 3104472 complement(80931..84017) 1 NC_002977.6 AcrB/AcrD/AcrF family protein 84017 3104472 MCA0079 Methylococcus capsulatus str. Bath AcrB/AcrD/AcrF family protein YP_112618.1 80931 R 243233 CDS YP_112619.1 53802702 3102368 complement(84017..84919) 1 NC_002977.6 hypothetical protein 84919 3102368 MCA0080 Methylococcus capsulatus str. Bath hypothetical protein YP_112619.1 84017 R 243233 CDS YP_112620.1 53802701 3103555 85182..85664 1 NC_002977.6 identified by similarity to SP:P30856; match to protein family HMM PF00254; FKBP-type peptidyl-prolyl cis-trans isomerase 85664 slyD 3103555 slyD Methylococcus capsulatus str. Bath FKBP-type peptidyl-prolyl cis-trans isomerase YP_112620.1 85182 D 243233 CDS YP_112621.1 53802700 3104493 complement(85707..87020) 1 NC_002977.6 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125; MiaB-like tRNA modifying enzyme YliG 87020 3104493 MCA0082 Methylococcus capsulatus str. Bath MiaB-like tRNA modifying enzyme YliG YP_112621.1 85707 R 243233 CDS YP_112622.1 53802699 3102910 87198..88115 1 NC_002977.6 identified by similarity to OMNI:NTL01SS01907; UbiE/COQ5 family methlytransferase 88115 3102910 MCA0083 Methylococcus capsulatus str. Bath UbiE/COQ5 family methlytransferase YP_112622.1 87198 D 243233 CDS YP_112623.1 53802698 3103231 88186..89226 1 NC_002977.6 hypothetical protein 89226 3103231 MCA0084 Methylococcus capsulatus str. Bath hypothetical protein YP_112623.1 88186 D 243233 CDS YP_112624.1 53802697 3103216 89266..89619 1 NC_002977.6 hypothetical protein 89619 3103216 MCA0085 Methylococcus capsulatus str. Bath hypothetical protein YP_112624.1 89266 D 243233 CDS YP_112625.1 53802696 3103989 complement(89664..90116) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04557; match to protein family HMM PF00114; type 4 fimbrial biogenesis protein PilE 90116 pilE 3103989 pilE Methylococcus capsulatus str. Bath type 4 fimbrial biogenesis protein PilE YP_112625.1 89664 R 243233 CDS YP_112626.1 53802688 3104693 complement(90123..93521) 1 NC_002977.6 hypothetical protein 93521 3104693 MCA0087 Methylococcus capsulatus str. Bath hypothetical protein YP_112626.1 90123 R 243233 CDS YP_112627.1 53802687 3104695 complement(93547..94095) 1 NC_002977.6 hypothetical protein 94095 3104695 MCA0088 Methylococcus capsulatus str. Bath hypothetical protein YP_112627.1 93547 R 243233 CDS YP_112628.1 53802686 3104913 complement(94123..95196) 1 NC_002977.6 identified by similarity to GP:17429699; pilin-like protein 95196 3104913 MCA0089 Methylococcus capsulatus str. Bath pilin-like protein YP_112628.1 94123 R 243233 CDS YP_112629.1 53802685 3104848 complement(95226..95816) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04552; type IV fimbrial biogenesis protein PilV 95816 3104848 MCA0090 Methylococcus capsulatus str. Bath type IV fimbrial biogenesis protein PilV YP_112629.1 95226 R 243233 CDS YP_112630.1 53802684 3102475 complement(95813..96361) 1 NC_002977.6 identified by similarity to GP:17431765; hypothetical protein 96361 3102475 MCA0091 Methylococcus capsulatus str. Bath hypothetical protein YP_112630.1 95813 R 243233 CDS YP_112631.1 53802683 3104296 complement(96425..97483) 1 NC_002977.6 identified by similarity to SP:P32066; RNA 2'-O-ribose methyltransferase 97483 3104296 MCA0092 Methylococcus capsulatus str. Bath RNA 2'-O-ribose methyltransferase YP_112631.1 96425 R 243233 CDS YP_112632.1 53802682 3104451 97563..98783 1 NC_002977.6 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 98783 3104451 MCA0093 Methylococcus capsulatus str. Bath ABC transporter ATP-binding protein YP_112632.1 97563 D 243233 CDS YP_112633.1 53802681 3104783 98827..99231 1 NC_002977.6 identified by match to protein family HMM PF01398; Mov34/MPN/PAD-1 family protein 99231 3104783 MCA0094 Methylococcus capsulatus str. Bath Mov34/MPN/PAD-1 family protein YP_112633.1 98827 D 243233 CDS YP_112634.1 53802673 3104594 complement(99236..101890) 1 NC_002977.6 identified by similarity to SP:P37278; match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation transporter E1-E2 family ATPase 101890 3104594 MCA0095 Methylococcus capsulatus str. Bath cation transporter E1-E2 family ATPase YP_112634.1 99236 R 243233 CDS YP_112635.1 53802672 3102799 102004..103104 1 NC_002977.6 identified by match to protein family HMM PF01609; ISMca1, transposase 103104 3102799 MCA0096 Methylococcus capsulatus str. Bath ISMca1, transposase YP_112635.1 102004 D 243233 CDS YP_112636.1 53802671 3104460 complement(103385..104815) 1 NC_002977.6 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 104815 gatB 3104460 gatB Methylococcus capsulatus str. Bath aspartyl/glutamyl-tRNA amidotransferase subunit B YP_112636.1 103385 R 243233 CDS YP_112637.1 53802670 3102578 complement(104842..106299) 1 NC_002977.6 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 106299 gatA 3102578 gatA Methylococcus capsulatus str. Bath aspartyl/glutamyl-tRNA amidotransferase subunit A YP_112637.1 104842 R 243233 CDS YP_112638.1 53802669 3102309 complement(106353..106640) 1 NC_002977.6 identified by similarity to SP:O06492; match to protein family HMM PF02686; match to protein family HMM TIGR00135; glutamyl-tRNA(Gln) amidotransferase subunit C 106640 gatC 3102309 gatC Methylococcus capsulatus str. Bath glutamyl-tRNA(Gln) amidotransferase subunit C YP_112638.1 106353 R 243233 CDS YP_112639.1 53802668 3102764 106745..107788 1 NC_002977.6 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 107788 mreB 3102764 mreB Methylococcus capsulatus str. Bath rod shape-determining protein MreB YP_112639.1 106745 D 243233 CDS YP_112640.1 53802667 3102561 107807..108709 1 NC_002977.6 identified by similarity to SP:P16926; match to protein family HMM PF04085; match to protein family HMM TIGR00219; rod shape-determining protein MreC 108709 mreC 3102561 mreC Methylococcus capsulatus str. Bath rod shape-determining protein MreC YP_112640.1 107807 D 243233 CDS YP_112641.1 53802659 3103344 108696..109187 1 NC_002977.6 identified by similarity to SP:P16927; match to protein family HMM PF04093; rod shape-determining protein MreD 109187 mreD 3103344 mreD Methylococcus capsulatus str. Bath rod shape-determining protein MreD YP_112641.1 108696 D 243233 CDS YP_112642.1 53802658 3103518 109218..111053 1 NC_002977.6 identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 2 111053 mrdA 3103518 mrdA Methylococcus capsulatus str. Bath penicillin-binding protein 2 YP_112642.1 109218 D 243233 CDS YP_112643.1 53802657 3102616 111050..112183 1 NC_002977.6 identified by similarity to SP:P15035; match to protein family HMM PF01098; match to protein family HMM TIGR02210; rod shape-determining protein RodA 112183 rodA 3102616 rodA Methylococcus capsulatus str. Bath rod shape-determining protein RodA YP_112643.1 111050 D 243233 CDS YP_112644.1 53802656 3103059 112342..113520 1 NC_002977.6 identified by similarity to SP:P08506; match to protein family HMM PF00144; match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase 113520 3103059 MCA0105 Methylococcus capsulatus str. Bath D-alanyl-D-alanine carboxypeptidase YP_112644.1 112342 D 243233 CDS YP_112645.1 53802655 3102068 113538..114389 1 NC_002977.6 identified by similarity to SP:P54692; match to protein family HMM PF01063; D-amino acid aminotransferase 114389 3102068 MCA0106 Methylococcus capsulatus str. Bath D-amino acid aminotransferase YP_112645.1 113538 D 243233 CDS YP_112646.1 53802654 3104125 114386..114649 1 NC_002977.6 identified by similarity to GP:17427335; match to protein family HMM PF04359; hypothetical protein 114649 3104125 MCA0107 Methylococcus capsulatus str. Bath hypothetical protein YP_112646.1 114386 D 243233 CDS YP_112647.1 53802650 3103451 114744..116189 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00914; match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter 116189 mgtE 3103451 mgtE Methylococcus capsulatus str. Bath magnesium transporter YP_112647.1 114744 D 243233 CDS YP_112648.1 53802649 3104249 116196..116819 1 NC_002977.6 identified by similarity to SP:Q9PDV9; match to protein family HMM PF03099; match to protein family HMM TIGR00214; lipoate-protein ligase B 116819 lipB 3104249 lipB Methylococcus capsulatus str. Bath lipoate-protein ligase B YP_112648.1 116196 D 243233 CDS YP_112649.1 53802648 3103690 116816..117784 1 NC_002977.6 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 117784 lipA 3103690 lipA Methylococcus capsulatus str. Bath lipoyl synthase YP_112649.1 116816 D 243233 CDS YP_112650.1 53802647 3104692 117877..118479 1 NC_002977.6 identified by similarity to OMNI:MT0787; hypothetical protein 118479 3104692 MCA0111 Methylococcus capsulatus str. Bath hypothetical protein YP_112650.1 117877 D 243233 CDS YP_112651.1 53802646 3104561 118557..119105 1 NC_002977.6 identified by similarity to SP:P17288; match to protein family HMM PF00719; inorganic pyrophosphatase 119105 ppa 3104561 ppa Methylococcus capsulatus str. Bath inorganic pyrophosphatase YP_112651.1 118557 D 243233 CDS YP_112652.1 53802645 3103299 complement(119053..119595) 1 NC_002977.6 identified by similarity to GP:1313919; HoxW protein 119595 hoxW 3103299 hoxW Methylococcus capsulatus str. Bath HoxW protein YP_112652.1 119053 R 243233 CDS YP_112653.1 53802627 3103239 complement(119597..121081) 1 NC_002977.6 identified by similarity to SP:P22320; NAD-reducing hydrogenase subunit beta 121081 3103239 MCA0114 Methylococcus capsulatus str. Bath NAD-reducing hydrogenase subunit beta YP_112653.1 119597 R 243233 CDS YP_112654.1 53802626 3102860 complement(121147..122544) 1 NC_002977.6 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 122544 hemN 3102860 hemN Methylococcus capsulatus str. Bath coproporphyrinogen III oxidase YP_112654.1 121147 R 243233 CDS YP_112655.1 53802624 3102999 122641..123078 1 NC_002977.6 identified by similarity to GP:19914581; match to protein family HMM PF06803; hypothetical protein 123078 3102999 MCA0116 Methylococcus capsulatus str. Bath hypothetical protein YP_112655.1 122641 D 243233 CDS YP_112656.1 53802625 3103327 123087..123560 1 NC_002977.6 identified by similarity to OMNI:VC1575; hypothetical protein 123560 3103327 MCA0117 Methylococcus capsulatus str. Bath hypothetical protein YP_112656.1 123087 D 243233 CDS YP_112657.1 53802623 3103606 complement(123533..124576) 1 NC_002977.6 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 124576 3103606 MCA0118 Methylococcus capsulatus str. Bath glycosyl transferase group 2 family protein YP_112657.1 123533 R 243233 CDS YP_112658.1 53802622 3102815 complement(124746..125204) 1 NC_002977.6 identified by match to protein family HMM PF00583; acetyltransferase 125204 3102815 MCA0119 Methylococcus capsulatus str. Bath acetyltransferase YP_112658.1 124746 R 243233 CDS YP_112659.1 53802621 3104254 125396..126508 1 NC_002977.6 identified by match to protein family HMM PF01594; hypothetical protein 126508 3104254 MCA0120 Methylococcus capsulatus str. Bath hypothetical protein YP_112659.1 125396 D 243233 CDS YP_112660.1 53802620 3104575 complement(126518..128167) 1 NC_002977.6 hypothetical protein 128167 3104575 MCA0121 Methylococcus capsulatus str. Bath hypothetical protein YP_112660.1 126518 R 243233 CDS YP_112661.1 53802610 3103269 complement(128160..129140) 1 NC_002977.6 identified by similarity to GP:9106685; hypothetical protein 129140 3103269 MCA0122 Methylococcus capsulatus str. Bath hypothetical protein YP_112661.1 128160 R 243233 CDS YP_112662.1 53802609 3104197 complement(129258..129545) 1 NC_002977.6 hypothetical protein 129545 3104197 MCA0123 Methylococcus capsulatus str. Bath hypothetical protein YP_112662.1 129258 R 243233 CDS YP_112663.1 53802608 3102901 complement(129689..129907) 1 NC_002977.6 hypothetical protein 129907 3102901 MCA0124 Methylococcus capsulatus str. Bath hypothetical protein YP_112663.1 129689 R 243233 CDS YP_112664.1 53802607 3102679 complement(129888..130016) 1 NC_002977.6 hypothetical protein 130016 3102679 MCA0125 Methylococcus capsulatus str. Bath hypothetical protein YP_112664.1 129888 R 243233 CDS YP_112665.1 53802606 3102830 complement(131324..131806) 1 NC_002977.6 hypothetical protein 131806 3102830 MCA0126 Methylococcus capsulatus str. Bath hypothetical protein YP_112665.1 131324 R 243233 CDS YP_112666.1 53802605 3102268 132057..133697 1 NC_002977.6 identified by similarity to SP:P75790; match to protein family HMM PF00005; ABC transporter ATP-binding protein 133697 3102268 MCA0127 Methylococcus capsulatus str. Bath ABC transporter ATP-binding protein YP_112666.1 132057 D 243233 CDS YP_112667.1 53802604 3103925 133709..134128 1 NC_002977.6 identified by similarity to GP:17133833; match to protein family HMM PF00472; peptidyl-tRNA hydrolase domain-containing protein 134128 3103925 MCA0128 Methylococcus capsulatus str. Bath peptidyl-tRNA hydrolase domain-containing protein YP_112667.1 133709 D 243233 CDS YP_112668.1 53802603 3102831 complement(134125..135210) 1 NC_002977.6 identified by similarity to SP:P41780; match to protein family HMM PF02424; thiamin biosynthesis lipoprotein ApbE 135210 apbE 3102831 apbE Methylococcus capsulatus str. Bath thiamin biosynthesis lipoprotein ApbE YP_112668.1 134125 R 243233 CDS YP_112669.1 53802594 3104743 complement(135314..135628) 1 NC_002977.6 hypothetical protein 135628 3104743 MCA0130 Methylococcus capsulatus str. Bath hypothetical protein YP_112669.1 135314 R 243233 CDS YP_112670.1 53802593 3104862 135692..136360 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00111; hypothetical protein 136360 3104862 MCA0131 Methylococcus capsulatus str. Bath hypothetical protein YP_112670.1 135692 D 243233 CDS YP_112671.1 53802592 3103127 136367..136987 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00112; hypothetical protein 136987 3103127 MCA0132 Methylococcus capsulatus str. Bath hypothetical protein YP_112671.1 136367 D 243233 CDS YP_112672.1 53802591 3104032 136994..139009 1 NC_002977.6 identified by match to protein family HMM PF00448; match to protein family HMM PF02628; match to protein family HMM PF02881; match to protein family HMM TIGR00064; cytochrome oxidase assembly family protein/cell division protein FtsY 139009 ftsY 3104032 ftsY Methylococcus capsulatus str. Bath cytochrome oxidase assembly family protein/cell division protein FtsY YP_112672.1 136994 D 243233 CDS YP_112673.1 53802590 3104660 139014..139676 1 NC_002977.6 identified by similarity to SP:P10115; match to protein family HMM PF00005; cell division ATP-binding protein FtsE 139676 ftsE 3104660 ftsE Methylococcus capsulatus str. Bath cell division ATP-binding protein FtsE YP_112673.1 139014 D 243233 CDS YP_112674.1 53802589 3103268 139769..140671 1 NC_002977.6 identified by similarity to SP:P10122; match to protein family HMM PF02687; protein insertion permease FtsX 140671 3103268 MCA0135 Methylococcus capsulatus str. Bath protein insertion permease FtsX YP_112674.1 139769 D 243233 CDS YP_112675.1 53802588 3103365 140773..141633 1 NC_002977.6 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 141633 rpoH 3103365 rpoH Methylococcus capsulatus str. Bath RNA polymerase factor sigma-32 YP_112675.1 140773 D 243233 CDS YP_112676.1 53802580 3103529 complement(141683..142552) 1 NC_002977.6 identified by similarity to SP:P00394; match to protein family HMM PF02219; match to protein family HMM TIGR00676; 5,10-methylenetetrahydrofolate reductase 142552 metF 3103529 metF Methylococcus capsulatus str. Bath 5,10-methylenetetrahydrofolate reductase YP_112676.1 141683 R 243233 CDS YP_112677.1 53802579 3104008 complement(142710..144128) 1 NC_002977.6 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 144128 ahcY 3104008 ahcY Methylococcus capsulatus str. Bath S-adenosyl-L-homocysteine hydrolase YP_112677.1 142710 R 243233 CDS YP_112678.1 53802578 3104970 complement(144326..145495) 1 NC_002977.6 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 145495 metK-1 3104970 metK-1 Methylococcus capsulatus str. Bath S-adenosylmethionine synthetase YP_112678.1 144326 R 243233 CDS YP_112679.1 53802577 3102337 145748..146482 1 NC_002977.6 identified by match to protein family HMM PF00535; glycosyl transferase family protein 146482 3102337 MCA0140 Methylococcus capsulatus str. Bath glycosyl transferase family protein YP_112679.1 145748 D 243233 CDS YP_112680.1 53802576 3104696 146679..147149 1 NC_002977.6 identified by similarity to GP:17430491; match to protein family HMM PF01161; match to protein family HMM TIGR00481; hypothetical protein 147149 3104696 MCA0141 Methylococcus capsulatus str. Bath hypothetical protein YP_112680.1 146679 D 243233 CDS YP_112681.1 53802575 3103491 147294..148376 1 NC_002977.6 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00378; calcium/proton exchanger 148376 cax-1 3103491 cax-1 Methylococcus capsulatus str. Bath calcium/proton exchanger YP_112681.1 147294 D 243233 CDS YP_112682.1 53802574 3103503 148339..149970 1 NC_002977.6 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D 149970 mdoD 3103503 mdoD Methylococcus capsulatus str. Bath glucan biosynthesis protein D YP_112682.1 148339 D 243233 CDS YP_112683.1 53802567 3105078 150561..151805 1 NC_002977.6 hypothetical protein 151805 3105078 MCA0145 Methylococcus capsulatus str. Bath hypothetical protein YP_112683.1 150561 D 243233 CDS YP_112684.1 53802566 3104638 151827..152975 1 NC_002977.6 hypothetical protein 152975 3104638 MCA0146 Methylococcus capsulatus str. Bath hypothetical protein YP_112684.1 151827 D 243233 CDS YP_112685.1 53802565 3105023 153160..154554 1 NC_002977.6 identified by similarity to GP:4972659; match to protein family HMM PF02397; polysaccharide biosynthesis protein 154554 3105023 MCA0147 Methylococcus capsulatus str. Bath polysaccharide biosynthesis protein YP_112685.1 153160 D 243233 CDS YP_112686.1 53802564 3102338 154610..155443 1 NC_002977.6 identified by similarity to SP:Q46629; match to protein family HMM PF02563; capsular polysaccharide export protein 155443 3102338 MCA0148 Methylococcus capsulatus str. Bath capsular polysaccharide export protein YP_112686.1 154610 D 243233 CDS YP_112687.1 53802563 3102859 155447..156865 1 NC_002977.6 identified by match to protein family HMM PF02706; chain length determinant protein 156865 3102859 MCA0149 Methylococcus capsulatus str. Bath chain length determinant protein YP_112687.1 155447 D 243233 CDS YP_112688.1 53802562 3105015 156890..157759 1 NC_002977.6 hypothetical protein 157759 3105015 MCA0150 Methylococcus capsulatus str. Bath hypothetical protein YP_112688.1 156890 D 243233 CDS YP_112689.1 53802561 3103836 157813..159324 1 NC_002977.6 hypothetical protein 159324 3103836 MCA0151 Methylococcus capsulatus str. Bath hypothetical protein YP_112689.1 157813 D 243233 CDS YP_112690.1 53802560 3104172 159293..160504 1 NC_002977.6 identified by match to protein family HMM PF00534; glycosyl transferase family protein 160504 3104172 MCA0152 Methylococcus capsulatus str. Bath glycosyl transferase family protein YP_112690.1 159293 D 243233 CDS YP_112691.1 53802551 3104421 160501..162054 1 NC_002977.6 hypothetical protein 162054 3104421 MCA0153 Methylococcus capsulatus str. Bath hypothetical protein YP_112691.1 160501 D 243233 CDS YP_112692.1 53802550 3104647 162081..163163 1 NC_002977.6 identified by similarity to OMNI:VC0925; match to protein family HMM PF00534; glycosyl transferase family protein 163163 3104647 MCA0154 Methylococcus capsulatus str. Bath glycosyl transferase family protein YP_112692.1 162081 D 243233 CDS YP_112693.1 53802549 3102122 163290..164384 1 NC_002977.6 hypothetical protein 164384 3102122 MCA0155 Methylococcus capsulatus str. Bath hypothetical protein YP_112693.1 163290 D 243233 CDS YP_112694.1 53802548 3102919 complement(165395..169414) 1 NC_002977.6 hypothetical protein 169414 3102919 MCA0157 Methylococcus capsulatus str. Bath hypothetical protein YP_112694.1 165395 R 243233 CDS YP_112695.1 53802547 3102913 complement(169485..170849) 1 NC_002977.6 identified by similarity to SP:P37773; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01081; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 170849 mpl 3102913 mpl Methylococcus capsulatus str. Bath UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_112695.1 169485 R 243233 CDS YP_112696.1 53802546 3104181 171127..171963 1 NC_002977.6 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 171963 apaH 3104181 apaH Methylococcus capsulatus str. Bath diadenosine tetraphosphatase YP_112696.1 171127 D 243233 CDS YP_112697.1 53802536 3103019 complement(172102..172326) 1 NC_002977.6 hypothetical protein 172326 3103019 MCA0160 Methylococcus capsulatus str. Bath hypothetical protein YP_112697.1 172102 R 243233 CDS YP_112698.1 53802535 3102510 complement(172400..173236) 1 NC_002977.6 identified by similarity to SP:P19932; match to protein family HMM PF04809; hydrogenase expression/formation protein 173236 3102510 MCA0161 Methylococcus capsulatus str. Bath hydrogenase expression/formation protein YP_112698.1 172400 R 243233 CDS YP_112699.1 53802534 3103626 complement(173279..173884) 1 NC_002977.6 identified by similarity to SP:Q03004; match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140; match to protein family HMM TIGR00141; hydrogenase expression/formation protein 173884 3103626 MCA0162 Methylococcus capsulatus str. Bath hydrogenase expression/formation protein YP_112699.1 173279 R 243233 CDS YP_112700.1 53802533 3102455 complement(173889..174575) 1 NC_002977.6 identified by similarity to SP:Q43953; match to protein family HMM PF01292; match to protein family HMM TIGR02125; nickel-iron hydrogenase, small subunit 174575 3102455 MCA0163 Methylococcus capsulatus str. Bath nickel-iron hydrogenase, small subunit YP_112700.1 173889 R 243233 CDS YP_112701.1 53802532 3103229 complement(174586..175164) 1 NC_002977.6 identified by similarity to GP:19421553; match to protein family HMM PF04955; nickel-iron hydrogenase, accessory protein 175164 3103229 MCA0164 Methylococcus capsulatus str. Bath nickel-iron hydrogenase, accessory protein YP_112701.1 174586 R 243233 CDS YP_112702.1 53802531 3103582 complement(175203..176996) 1 NC_002977.6 identified by similarity to SP:P18636; match to protein family HMM PF00374; nickel-iron hydrogenase, large subunit 176996 3103582 MCA0165 Methylococcus capsulatus str. Bath nickel-iron hydrogenase, large subunit YP_112702.1 175203 R 243233 CDS YP_112703.1 53802530 3102900 complement(177012..178100) 1 NC_002977.6 identified by similarity to SP:P21950; match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; nickel-iron hydrogenase, small subunit 178100 3102900 MCA0166 Methylococcus capsulatus str. Bath nickel-iron hydrogenase, small subunit YP_112703.1 177012 R 243233 CDS YP_112704.1 53802520 3103913 complement(178279..178866) 1 NC_002977.6 identified by similarity to GP:7380649; match to protein family HMM PF04367; hypothetical protein 178866 3103913 MCA0167 Methylococcus capsulatus str. Bath hypothetical protein YP_112704.1 178279 R 243233 CDS YP_112705.1 53802519 3102828 179106..179753 1 NC_002977.6 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 179753 3102828 MCA0168 Methylococcus capsulatus str. Bath ABC transporter ATP-binding protein YP_112705.1 179106 D 243233 CDS YP_112706.1 53802518 3104612 179753..180544 1 NC_002977.6 identified by similarity to OMNI:TM0193; match to protein family HMM PF03649; match to protein family HMM TIGR00245; ABC transporter permease 180544 3104612 MCA0169 Methylococcus capsulatus str. Bath ABC transporter permease YP_112706.1 179753 D 243233 CDS YP_112707.1 53802517 3104788 complement(180589..181929) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00287; match to protein family HMM PF00487; fatty acid desaturase 181929 3104788 MCA0170 Methylococcus capsulatus str. Bath fatty acid desaturase YP_112707.1 180589 R 243233 CDS YP_112708.1 53802516 3102331 complement(181951..182469) 1 NC_002977.6 identified by similarity to GP:17427325; lipoprotein 182469 3102331 MCA0171 Methylococcus capsulatus str. Bath lipoprotein YP_112708.1 181951 R 243233 CDS YP_112709.1 53802515 3103434 complement(182469..183383) 1 NC_002977.6 identified by similarity to GP:17427324; match to protein family HMM PF02470; Mce family protein 183383 3103434 MCA0172 Methylococcus capsulatus str. Bath Mce family protein YP_112709.1 182469 R 243233 CDS YP_112710.1 53802514 3103729 complement(183385..184155) 1 NC_002977.6 identified by similarity to OMNI:NTL01SM01832; match to protein family HMM PF00005; ABC transporter ATP-binding protein 184155 3103729 MCA0173 Methylococcus capsulatus str. Bath ABC transporter ATP-binding protein YP_112710.1 183385 R 243233 CDS YP_112711.1 53802513 3102330 complement(184152..185372) 1 NC_002977.6 identified by match to protein family HMM PF02405; ABC transporter permease 185372 3102330 MCA0174 Methylococcus capsulatus str. Bath ABC transporter permease YP_112711.1 184152 R 243233 CDS YP_112712.1 53802504 3103423 185402..185557 1 NC_002977.6 hypothetical protein 185557 3103423 MCA0175 Methylococcus capsulatus str. Bath hypothetical protein YP_112712.1 185402 D 243233 CDS YP_112713.1 53802503 3104998 complement(185617..187227) 1 NC_002977.6 identified by similarity to GP:17431587; match to protein family HMM PF02321; match to protein family HMM TIGR01845; outer membrane efflux protein 187227 3104998 MCA0176 Methylococcus capsulatus str. Bath outer membrane efflux protein YP_112713.1 185617 R 243233 CDS YP_112714.1 53802502 3102857 complement(187233..188453) 1 NC_002977.6 identified by similarity to GP:17432073; match to protein family HMM TIGR01730; hypothetical protein 188453 3102857 MCA0177 Methylococcus capsulatus str. Bath hypothetical protein YP_112714.1 187233 R 243233 CDS YP_112715.1 53802501 3104714 complement(188453..191623) 1 NC_002977.6 AcrB/AcrD/AcrF family protein 191623 3104714 MCA0178 Methylococcus capsulatus str. Bath AcrB/AcrD/AcrF family protein YP_112715.1 188453 R 243233 CDS YP_112716.1 53802500 3104744 191804..192571 1 NC_002977.6 hypothetical protein 192571 3104744 MCA0179 Methylococcus capsulatus str. Bath hypothetical protein YP_112716.1 191804 D 243233 CDS YP_112717.1 53802499 3103222 193094..193498 1 NC_002977.6 hypothetical protein 193498 3103222 MCA0180 Methylococcus capsulatus str. Bath hypothetical protein YP_112717.1 193094 D 243233 CDS YP_112718.1 53802498 3102052 complement(193505..193699) 1 NC_002977.6 hypothetical protein 193699 3102052 MCA0181 Methylococcus capsulatus str. Bath hypothetical protein YP_112718.1 193505 R 243233 CDS YP_112719.1 53802497 3103667 complement(193696..195099) 1 NC_002977.6 identified by match to protein family HMM PF01565; match to protein family HMM PF02913; oxidoreductase, FAD-binding 195099 3103667 MCA0182 Methylococcus capsulatus str. Bath oxidoreductase, FAD-binding YP_112719.1 193696 R 243233 CDS YP_112720.2 77128442 3102806 complement(195116..195703) 1 NC_002977.6 identified by similarity to SP:P51001; match to protein family HMM PF01380; match to protein family HMM TIGR00441; phosphoheptose isomerase 195703 gmhA 3102806 gmhA Methylococcus capsulatus str. Bath phosphoheptose isomerase YP_112720.2 195116 R 243233 CDS YP_112721.1 53802488 3104347 complement(195700..196071) 1 NC_002977.6 identified by similarity to GP:17430288; match to protein family HMM PF02021; match to protein family HMM TIGR00252; hypothetical protein 196071 3104347 MCA0184 Methylococcus capsulatus str. Bath hypothetical protein YP_112721.1 195700 R 243233 CDS YP_112722.1 53802653 3103974 complement(196071..197948) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04424; match to protein family HMM PF04348; lipoprotein 197948 3103974 MCA0185 Methylococcus capsulatus str. Bath lipoprotein YP_112722.1 196071 R 243233 CDS YP_112723.1 53802652 3104548 197976..198851 1 NC_002977.6 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; hypothetical protein 198851 3104548 MCA0186 Methylococcus capsulatus str. Bath hypothetical protein YP_112723.1 197976 D 243233 CDS YP_112724.1 53802644 3102877 198875..199819 1 NC_002977.6 identified by similarity to OMNI:NTL01SM00894; match to protein family HMM PF01522; hypothetical protein 199819 3102877 MCA0187 Methylococcus capsulatus str. Bath hypothetical protein YP_112724.1 198875 D 243233 CDS YP_112725.1 53802643 3102428 complement(199830..200285) 1 NC_002977.6 identified by similarity to OMNI:NTL01EC04037; hypothetical protein 200285 3102428 MCA0188 Methylococcus capsulatus str. Bath hypothetical protein YP_112725.1 199830 R 243233 CDS YP_112726.1 53802642 3102734 201156..201560 1 NC_002977.6 hypothetical protein 201560 3102734 MCA0189 Methylococcus capsulatus str. Bath hypothetical protein YP_112726.1 201156 D 243233 CDS YP_112727.1 53802641 3102619 complement(201762..201935) 1 NC_002977.6 hypothetical protein 201935 3102619 MCA0190 Methylococcus capsulatus str. Bath hypothetical protein YP_112727.1 201762 R 243233 CDS YP_112728.1 53802640 3102091 203115..203288 1 NC_002977.6 hypothetical protein 203288 3102091 MCA0192 Methylococcus capsulatus str. Bath hypothetical protein YP_112728.1 203115 D 243233 CDS YP_112729.1 53802639 3103153 complement(203337..203693) 1 NC_002977.6 hypothetical protein 203693 3103153 MCA0193 Methylococcus capsulatus str. Bath hypothetical protein YP_112729.1 203337 R 243233 CDS YP_112730.1 53802638 3102790 complement(203782..203961) 1 NC_002977.6 hypothetical protein 203961 3102790 MCA0194 Methylococcus capsulatus str. Bath hypothetical protein YP_112730.1 203782 R 243233 CDS YP_112731.1 53802637 3104824 complement(203966..205396) 1 NC_002977.6 identified by similarity to GP:18893765; match to protein family HMM PF01139; hypothetical protein 205396 3104824 MCA0195 Methylococcus capsulatus str. Bath hypothetical protein YP_112731.1 203966 R 243233 CDS YP_112732.1 53802636 3102499 complement(205411..205842) 1 NC_002977.6 identified by similarity to GP:18893692; match to protein family HMM PF01951; hypothetical protein 205842 3102499 MCA0196 Methylococcus capsulatus str. Bath hypothetical protein YP_112732.1 205411 R 243233 CDS YP_112733.1 53802635 3102955 205955..206404 1 NC_002977.6 identified by similarity to OMNI:NTL02SS0707; match to protein family HMM PF01864; hypothetical protein 206404 3102955 MCA0197 Methylococcus capsulatus str. Bath hypothetical protein YP_112733.1 205955 D 243233 CDS YP_112734.1 53802634 3104997 complement(206364..207377) 1 NC_002977.6 identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase 207377 3104997 MCA0198 Methylococcus capsulatus str. Bath Ser/Thr protein phosphatase YP_112734.1 206364 R 243233 CDS YP_112735.1 53802633 3102587 complement(207374..207688) 1 NC_002977.6 hypothetical protein 207688 3102587 MCA0199 Methylococcus capsulatus str. Bath hypothetical protein YP_112735.1 207374 R 243233 CDS YP_112736.1 53802632 3102524 207834..208223 1 NC_002977.6 identified by similarity to GP:15020688; hypothetical protein 208223 3102524 MCA0200 Methylococcus capsulatus str. Bath hypothetical protein YP_112736.1 207834 D 243233 CDS YP_112737.1 53802631 3103074 208220..208843 1 NC_002977.6 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 208843 3103074 MCA0201 Methylococcus capsulatus str. Bath hypothetical protein YP_112737.1 208220 D 243233 CDS YP_112738.1 53802630 3104708 complement(208872..209183) 1 NC_002977.6 identified by similarity to OMNI:NTL02ML3042; match to protein family HMM PF05169; match to protein family HMM TIGR02174; hypothetical protein 209183 3104708 MCA0202 Methylococcus capsulatus str. Bath hypothetical protein YP_112738.1 208872 R 243233 CDS YP_112739.1 53802629 3102962 complement(209180..209413) 1 NC_002977.6 identified by similarity to SP:P20190; hypothetical protein 209413 3102962 MCA0203 Methylococcus capsulatus str. Bath hypothetical protein YP_112739.1 209180 R 243233 CDS YP_112740.1 53802628 3103905 209618..211186 1 NC_002977.6 identified by similarity to SP:P27714; match to protein family HMM PF02579; match to protein family HMM PF04055; match to protein family HMM TIGR01290; nitrogenase cofactor biosynthesis protein NifB 211186 3103905 MCA0204 Methylococcus capsulatus str. Bath nitrogenase cofactor biosynthesis protein NifB YP_112740.1 209618 D 243233 CDS YP_112741.1 53802619 3103964 211303..211527 1 NC_002977.6 identified by similarity to GP:1518927; match to protein family HMM PF00037; ferredoxin, 4Fe-4S 211527 3103964 MCA0205 Methylococcus capsulatus str. Bath ferredoxin, 4Fe-4S YP_112741.1 211303 D 243233 CDS YP_112742.1 53802618 3104865 211539..211922 1 NC_002977.6 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; HesB/YadR/YfhF family protein 211922 3104865 MCA0206 Methylococcus capsulatus str. Bath HesB/YadR/YfhF family protein YP_112742.1 211539 D 243233 CDS YP_112743.1 53802617 3103900 211941..212474 1 NC_002977.6 identified by similarity to GP:142364; hypothetical protein 212474 3103900 MCA0207 Methylococcus capsulatus str. Bath hypothetical protein YP_112743.1 211941 D 243233 CDS YP_112744.1 53802616 3102282 212455..213246 1 NC_002977.6 identified by match to protein family HMM PF01816; hypothetical protein 213246 3102282 MCA0208 Methylococcus capsulatus str. Bath hypothetical protein YP_112744.1 212455 D 243233 CDS YP_112745.1 53802615 3103988 213268..213588 1 NC_002977.6 identified by similarity to SP:P08533; match to protein family HMM PF04319; nifZ protein 213588 3103988 MCA0209 Methylococcus capsulatus str. Bath nifZ protein YP_112745.1 213268 D 243233 CDS YP_112746.1 53802614 3104700 213585..213854 1 NC_002977.6 nifZ protein 213854 3104700 MCA0210 Methylococcus capsulatus str. Bath nifZ protein YP_112746.1 213585 D 243233 CDS YP_112747.1 53802613 3103111 213900..214244 1 NC_002977.6 identified by similarity to GP:12620472; hypothetical protein 214244 3103111 MCA0211 Methylococcus capsulatus str. Bath hypothetical protein YP_112747.1 213900 D 243233 CDS YP_112748.1 53802612 3103373 214241..215389 1 NC_002977.6 identified by similarity to SP:Q43884; match to protein family HMM PF00266; cysteine desulfurase 215389 nifS 3103373 nifS Methylococcus capsulatus str. Bath cysteine desulfurase YP_112748.1 214241 D 243233 CDS YP_112749.1 53802611 3104823 215448..215666 1 NC_002977.6 identified by similarity to OMNI:NTL02ML4553; match to protein family HMM PF06988; hypothetical protein 215666 3104823 MCA0213 Methylococcus capsulatus str. Bath hypothetical protein YP_112749.1 215448 D 243233 CDS YP_112750.1 53802602 3104667 215669..215947 1 NC_002977.6 identified by similarity to GP:551688; hypothetical protein 215947 3104667 MCA0214 Methylococcus capsulatus str. Bath hypothetical protein YP_112750.1 215669 D 243233 CDS YP_112751.1 53802601 3104105 215944..217098 1 NC_002977.6 identified by match to protein family HMM PF01041; aminotransferase 217098 3104105 MCA0215 Methylococcus capsulatus str. Bath aminotransferase YP_112751.1 215944 D 243233 CDS YP_112752.1 53802600 3104967 217110..217451 1 NC_002977.6 identified by similarity to SP:P25528; match to protein family HMM PF00111; (2Fe-2S) ferredoxin 217451 3104967 MCA0216 Methylococcus capsulatus str. Bath (2Fe-2S) ferredoxin YP_112752.1 217110 D 243233 CDS YP_112753.1 53802599 3104963 217457..217687 1 NC_002977.6 hypothetical protein 217687 3104963 MCA0217 Methylococcus capsulatus str. Bath hypothetical protein YP_112753.1 217457 D 243233 CDS YP_112754.1 53802598 3103412 217693..218535 1 NC_002977.6 identified by similarity to GP:7407093; hypothetical protein 218535 3103412 MCA0218 Methylococcus capsulatus str. Bath hypothetical protein YP_112754.1 217693 D 243233 CDS YP_112755.1 53802597 3103383 complement(218574..219392) 1 NC_002977.6 identified by similarity to OMNI:NTL01XF02028; match to protein family HMM PF03692; hypothetical protein 219392 3103383 MCA0219 Methylococcus capsulatus str. Bath hypothetical protein YP_112755.1 218574 R 243233 CDS YP_112756.1 53802596 3103416 219564..219779 1 NC_002977.6 identified by similarity to OMNI:NTL01ATC0362; hypothetical protein 219779 3103416 MCA0220 Methylococcus capsulatus str. Bath hypothetical protein YP_112756.1 219564 D 243233 CDS YP_112757.1 53802595 3104706 219939..220514 1 NC_002977.6 identified by similarity to GP:17135185; hypothetical protein 220514 3104706 MCA0221 Methylococcus capsulatus str. Bath hypothetical protein YP_112757.1 219939 D 243233 CDS YP_112758.1 53802587 3102725 complement(220563..222152) 1 NC_002977.6 identified by similarity to GP:2983454; hypothetical protein 222152 3102725 MCA0222 Methylococcus capsulatus str. Bath hypothetical protein YP_112758.1 220563 R 243233 CDS YP_112759.1 53802586 3104712 complement(222149..222586) 1 NC_002977.6 identified by similarity to GP:862325; match to protein family HMM PF03960; match to protein family HMM TIGR01616; nitrogenase-associated protein 222586 3104712 MCA0223 Methylococcus capsulatus str. Bath nitrogenase-associated protein YP_112759.1 222149 R 243233 CDS YP_112760.1 53802585 3102521 complement(222594..222845) 1 NC_002977.6 hypothetical protein 222845 3102521 MCA0224 Methylococcus capsulatus str. Bath hypothetical protein YP_112760.1 222594 R 243233 CDS YP_112761.1 53802584 3102639 complement(222898..223224) 1 NC_002977.6 identified by similarity to GP:1754625; match to protein family HMM PF00355; Rieske 2Fe-2S family protein 223224 3102639 MCA0225 Methylococcus capsulatus str. Bath Rieske 2Fe-2S family protein YP_112761.1 222898 R 243233 CDS YP_112762.1 53802583 3102644 223963..225063 1 NC_002977.6 identified by match to protein family HMM PF01609; ISMca1, transposase 225063 3102644 MCA0227 Methylococcus capsulatus str. Bath ISMca1, transposase YP_112762.1 223963 D 243233 CDS YP_112763.1 53802582 3103256 complement(225302..225727) 1 NC_002977.6 identified by match to protein family HMM PF00072; response regulator 225727 3103256 MCA0228 Methylococcus capsulatus str. Bath response regulator YP_112763.1 225302 R 243233 CDS YP_112764.1 53802581 3102678 226242..227123 1 NC_002977.6 nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; in R. etli there are three essentially identical copies of nifH which are actively expressed during symbiosis; nitrogenase reductase 227123 nifH 3102678 nifH Methylococcus capsulatus str. Bath nitrogenase reductase YP_112764.1 226242 D 243233 CDS YP_112765.1 53802573 3102880 227222..228682 1 NC_002977.6 identified by similarity to SP:P06120; match to protein family HMM PF00148; match to protein family HMM TIGR01282; match to protein family HMM TIGR01862; nitrogenase molybdenum-iron protein subunit alpha 228682 nifD 3102880 nifD Methylococcus capsulatus str. Bath nitrogenase molybdenum-iron protein subunit alpha YP_112765.1 227222 D 243233 CDS YP_112766.1 53802572 3103105 228789..230348 1 NC_002977.6 identified by similarity to SP:P20621; match to protein family HMM PF00148; match to protein family HMM TIGR01286; nitrogenase molybdenum-iron protein subunit beta 230348 nifK 3103105 nifK Methylococcus capsulatus str. Bath nitrogenase molybdenum-iron protein subunit beta YP_112766.1 228789 D 243233 CDS YP_112767.1 53802571 3102290 230591..230959 1 NC_002977.6 identified by similarity to SP:P37097; match to protein family HMM PF00111; (2Fe-2S) ferredoxin 230959 3102290 MCA0232 Methylococcus capsulatus str. Bath (2Fe-2S) ferredoxin YP_112767.1 230591 D 243233 CDS YP_112768.1 53802570 3102543 231399..233081 1 NC_002977.6 identified by similarity to SP:P26506; match to protein family HMM PF00148; match to protein family HMM PF04324; match to protein family HMM TIGR01283; nitrogenase iron-molybdenum cofactor biosynthesis protein nifE 233081 nifE 3102543 nifE Methylococcus capsulatus str. Bath nitrogenase iron-molybdenum cofactor biosynthesis protein nifE YP_112768.1 231399 D 243233 CDS YP_112769.1 53802569 3102301 233089..234462 1 NC_002977.6 identified by similarity to SP:P26507; match to protein family HMM PF00148; match to protein family HMM TIGR01285; nitrogenase molybdenum-iron cofactor biosynthesis protein NifN 234462 nifN 3102301 nifN Methylococcus capsulatus str. Bath nitrogenase molybdenum-iron cofactor biosynthesis protein NifN YP_112769.1 233089 D 243233 CDS YP_112770.1 53802568 3103770 234506..234931 1 NC_002977.6 identified by similarity to SP:P19078; match to protein family HMM PF02579; nitrogenase molybdenum-iron protein NifX 234931 3103770 MCA0235 Methylococcus capsulatus str. Bath nitrogenase molybdenum-iron protein NifX YP_112770.1 234506 D 243233 CDS YP_112771.1 53802559 3103702 234945..235403 1 NC_002977.6 identified by similarity to GP:12620458; match to protein family HMM PF03270; hypothetical protein 235403 3103702 MCA0236 Methylococcus capsulatus str. Bath hypothetical protein YP_112771.1 234945 D 243233 CDS YP_112772.1 53802558 3102060 235418..235609 1 NC_002977.6 identified by similarity to SP:Q44148; match to protein family HMM PF05082; hypothetical protein 235609 3102060 MCA0237 Methylococcus capsulatus str. Bath hypothetical protein YP_112772.1 235418 D 243233 CDS YP_112773.1 53802557 3104033 235620..235928 1 NC_002977.6 identified by similarity to SP:P46036; match to protein family HMM PF00037; ferredoxin, 4Fe-4S 235928 3104033 MCA0238 Methylococcus capsulatus str. Bath ferredoxin, 4Fe-4S YP_112773.1 235620 D 243233 CDS YP_112774.1 53802556 3103048 235978..236571 1 NC_002977.6 identified by similarity to SP:P11068; match to protein family HMM PF04891; nitrogen fixation protein nifQ 236571 3103048 MCA0239 Methylococcus capsulatus str. Bath nitrogen fixation protein nifQ YP_112774.1 235978 D 243233 CDS YP_112775.1 53802555 3103767 236550..237620 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00760; match to protein family HMM PF01571; hypothetical protein 237620 3103767 MCA0240 Methylococcus capsulatus str. Bath hypothetical protein YP_112775.1 236550 D 243233 CDS YP_112776.1 53802554 3104089 237673..238053 1 NC_002977.6 protein associated with Co2+ and Mg2+ efflux; ApaG protein 238053 apaG 3104089 apaG Methylococcus capsulatus str. Bath ApaG protein YP_112776.1 237673 D 243233 CDS YP_112777.1 53802553 3103291 238108..238728 1 NC_002977.6 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 238728 clpP 3103291 clpP Methylococcus capsulatus str. Bath ATP-dependent Clp protease proteolytic subunit YP_112777.1 238108 D 243233 CDS YP_112778.1 53802552 3104969 238818..240086 1 NC_002977.6 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 240086 clpX 3104969 clpX Methylococcus capsulatus str. Bath ATP-dependent protease ATP-binding subunit ClpX YP_112778.1 238818 D 243233 CDS YP_112779.1 53802545 3102431 240724..240927 1 NC_002977.6 hypothetical protein 240927 3102431 MCA0245 Methylococcus capsulatus str. Bath hypothetical protein YP_112779.1 240724 D 243233 CDS YP_112780.1 53802544 3104881 240908..241558 1 NC_002977.6 identified by similarity to GP:17135818; match to protein family HMM PF05063; adenine-specific DNA methyltransferase 241558 3104881 MCA0246 Methylococcus capsulatus str. Bath adenine-specific DNA methyltransferase YP_112780.1 240908 D 243233 CDS YP_112781.1 53802543 3103376 241910..243121 1 NC_002977.6 identified by similarity to SP:P39171; match to protein family HMM PF00266; match to protein family HMM TIGR02006; cysteine desulfurase 243121 iscS 3103376 iscS Methylococcus capsulatus str. Bath cysteine desulfurase YP_112781.1 241910 D 243233 CDS YP_112782.1 53802542 3102882 243163..243582 1 NC_002977.6 identified by similarity to SP:P77310; match to protein family HMM PF01592; match to protein family HMM TIGR01999; scaffold protein 243582 3102882 MCA0248 Methylococcus capsulatus str. Bath scaffold protein YP_112782.1 243163 D 243233 CDS YP_112783.1 53802541 3102505 243608..243994 1 NC_002977.6 identified by similarity to GP:17427504; match to protein family HMM PF01521; match to protein family HMM TIGR00049; HesB/YadR/YfhF family protein 243994 3102505 MCA0249 Methylococcus capsulatus str. Bath HesB/YadR/YfhF family protein YP_112783.1 243608 D 243233 CDS YP_112784.1 53802540 3102615 244021..244344 1 NC_002977.6 identified by similarity to GP:2271523; match to protein family HMM PF01521; match to protein family HMM TIGR00049; match to protein family HMM TIGR02011; HesB/YadR/YfhF family protein 244344 3102615 MCA0250 Methylococcus capsulatus str. Bath HesB/YadR/YfhF family protein YP_112784.1 244021 D 243233 CDS YP_112785.1 53802539 3102129 244356..244889 1 NC_002977.6 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 244889 hscB 3102129 hscB Methylococcus capsulatus str. Bath co-chaperone HscB YP_112785.1 244356 D 243233 CDS YP_112786.1 53802538 3104595 244889..246748 1 NC_002977.6 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 246748 hscA 3104595 hscA Methylococcus capsulatus str. Bath chaperone protein HscA YP_112786.1 244889 D 243233 CDS YP_112787.1 53802537 3103244 246751..247089 1 NC_002977.6 identified by similarity to SP:P25528; match to protein family HMM PF00111; match to protein family HMM TIGR02007; (2Fe-2S) ferredoxin 247089 3103244 MCA0253 Methylococcus capsulatus str. Bath (2Fe-2S) ferredoxin YP_112787.1 246751 D 243233 CDS YP_112788.1 53802529 3103603 247098..248252 1 NC_002977.6 identified by similarity to SP:P05342; match to protein family HMM PF00682; homocitrate synthase 248252 nifV 3103603 nifV Methylococcus capsulatus str. Bath homocitrate synthase YP_112788.1 247098 D 243233 CDS YP_112789.1 53802528 3102092 248299..248637 1 NC_002977.6 identified by similarity to SP:P26481; match to protein family HMM PF03206; nitrogen fixation protein NifW 248637 3102092 MCA0255 Methylococcus capsulatus str. Bath nitrogen fixation protein NifW YP_112789.1 248299 D 243233 CDS YP_112790.1 53802527 3103236 248741..249067 1 NC_002977.6 identified by similarity to SP:O66511; (2Fe-2S) ferredoxin 249067 3103236 MCA0256 Methylococcus capsulatus str. Bath (2Fe-2S) ferredoxin YP_112790.1 248741 D 243233 CDS YP_112791.1 53802526 3102822 249081..249569 1 NC_002977.6 identified by similarity to GP:17131609; hypothetical protein 249569 3102822 MCA0257 Methylococcus capsulatus str. Bath hypothetical protein YP_112791.1 249081 D 243233 CDS YP_112792.1 53802525 3102098 249610..249933 1 NC_002977.6 identified by similarity to SP:P25528; match to protein family HMM PF00111; (2Fe-2S) ferredoxin 249933 3102098 MCA0258 Methylococcus capsulatus str. Bath (2Fe-2S) ferredoxin YP_112792.1 249610 D 243233 CDS YP_112793.1 53802524 3102374 250085..250417 1 NC_002977.6 identified by similarity to GP:19880969; match to protein family HMM TIGR00365; glutaredoxin-like protein 250417 3102374 MCA0259 Methylococcus capsulatus str. Bath glutaredoxin-like protein YP_112793.1 250085 D 243233 CDS YP_112794.1 53802523 3103580 250423..250671 1 NC_002977.6 identified by match to protein family HMM PF01722; toluene-tolerance protein 250671 3103580 MCA0260 Methylococcus capsulatus str. Bath toluene-tolerance protein YP_112794.1 250423 D 243233 CDS YP_112795.1 53802522 3102591 250692..250925 1 NC_002977.6 identified by similarity to OMNI:TM1186; hypothetical protein 250925 3102591 MCA0261 Methylococcus capsulatus str. Bath hypothetical protein YP_112795.1 250692 D 243233 CDS YP_112796.1 53802487 3103097 250992..252668 1 NC_002977.6 identified by match to protein family HMM PF00004; ATPase AAA 252668 3103097 MCA0262 Methylococcus capsulatus str. Bath ATPase AAA YP_112796.1 250992 D 243233 CDS YP_112797.1 53802486 3102592 252934..253611 1 NC_002977.6 identified by similarity to OMNI:NTL01BM1881; match to protein family HMM PF01557; fumarylacetoacetate hydrolase 253611 3102592 MCA0263 Methylococcus capsulatus str. Bath fumarylacetoacetate hydrolase YP_112797.1 252934 D 243233 CDS YP_112798.1 53802485 3103706 253623..253862 1 NC_002977.6 hypothetical protein 253862 3103706 MCA0264 Methylococcus capsulatus str. Bath hypothetical protein YP_112798.1 253623 D 243233 CDS YP_112799.1 53802484 3102326 complement(253921..254304) 1 NC_002977.6 hypothetical protein 254304 3102326 MCA0265 Methylococcus capsulatus str. Bath hypothetical protein YP_112799.1 253921 R 243233 CDS YP_112800.1 53802483 3102729 254445..254816 1 NC_002977.6 hypothetical protein 254816 3102729 MCA0266 Methylococcus capsulatus str. Bath hypothetical protein YP_112800.1 254445 D 243233 CDS YP_112801.1 53802482 3103316 254833..254997 1 NC_002977.6 hypothetical protein 254997 3103316 MCA0267 Methylococcus capsulatus str. Bath hypothetical protein YP_112801.1 254833 D 243233 CDS YP_112802.1 53802481 3104399 255158..256453 1 NC_002977.6 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter 256453 amt-1 3104399 amt-1 Methylococcus capsulatus str. Bath ammonium transporter YP_112802.1 255158 D 243233 CDS YP_112803.1 53802480 3102292 complement(256499..256948) 1 NC_002977.6 identified by similarity to OMNI:NTL02SA0423; hypothetical protein 256948 3102292 MCA0269 Methylococcus capsulatus str. Bath hypothetical protein YP_112803.1 256499 R 243233 CDS YP_112804.1 53802463 3102718 complement(256945..257352) 1 NC_002977.6 identified by similarity to SP:P43933; match to protein family HMM PF01909; nucleotidyltransferase domain-containing protein 257352 3102718 MCA0270 Methylococcus capsulatus str. Bath nucleotidyltransferase domain-containing protein YP_112804.1 256945 R 243233 CDS YP_112805.1 53802462 3104405 complement(257349..257768) 1 NC_002977.6 identified by match to protein family HMM TIGR01987; hypothetical protein 257768 3104405 MCA0271 Methylococcus capsulatus str. Bath hypothetical protein YP_112805.1 257349 R 243233 CDS YP_112806.1 53802461 3105088 complement(257817..258197) 1 NC_002977.6 type I restriction endonuclease S subunit 258197 3105088 MCA0272 Methylococcus capsulatus str. Bath type I restriction endonuclease S subunit YP_112806.1 257817 R 243233 CDS YP_112807.1 53802460 3102059 complement(258264..258413) 1 NC_002977.6 hypothetical protein 258413 3102059 MCA0273 Methylococcus capsulatus str. Bath hypothetical protein YP_112807.1 258264 R 243233 CDS YP_112808.1 53802459 3102312 complement(258432..261440) 1 NC_002977.6 identified by similarity to OMNI:NTL01XF02722; match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851; type I restriction-modification system, R subunit 261440 3102312 MCA0274 Methylococcus capsulatus str. Bath type I restriction-modification system, R subunit YP_112808.1 258432 R 243233 CDS YP_112809.1 53802458 3103170 complement(261427..262587) 1 NC_002977.6 identified by match to protein family HMM PF01381; DNA-binding protein 262587 3103170 MCA0275 Methylococcus capsulatus str. Bath DNA-binding protein YP_112809.1 261427 R 243233 CDS YP_112810.1 53802457 3104779 complement(262580..262909) 1 NC_002977.6 identified by similarity to GP:4098979; killer suppression protein HigA 262909 3104779 MCA0276 Methylococcus capsulatus str. Bath killer suppression protein HigA YP_112810.1 262580 R 243233 CDS YP_112811.1 53802449 3103246 complement(263017..264441) 1 NC_002977.6 identified by similarity to GP:9187842; hypothetical protein 264441 3103246 MCA0277 Methylococcus capsulatus str. Bath hypothetical protein YP_112811.1 263017 R 243233 CDS YP_112812.1 53802448 3103008 complement(264441..266813) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA02735; match to protein family HMM PF02384; match to protein family HMM PF02506; type I restriction-modification system, M subunit 266813 3103008 MCA0278 Methylococcus capsulatus str. Bath type I restriction-modification system, M subunit YP_112812.1 264441 R 243233 CDS YP_112813.1 53802447 3104422 complement(266810..267079) 1 NC_002977.6 identified by similarity to GP:2764916; match to protein family HMM TIGR01764; DNA binding domain-containing protein 267079 3104422 MCA0279 Methylococcus capsulatus str. Bath DNA binding domain-containing protein YP_112813.1 266810 R 243233 CDS YP_112814.1 53802446 3104065 267166..267378 1 NC_002977.6 hypothetical protein 267378 3104065 MCA0280 Methylococcus capsulatus str. Bath hypothetical protein YP_112814.1 267166 D 243233 CDS YP_112815.1 53802445 3103752 complement(267415..268290) 1 NC_002977.6 identified by match to protein family HMM PF00665; ISMca2, transposase, OrfB 268290 3103752 MCA0281 Methylococcus capsulatus str. Bath ISMca2, transposase, OrfB YP_112815.1 267415 R 243233 CDS YP_112816.1 53802444 3103504 complement(268287..268649) 1 NC_002977.6 identified by match to protein family HMM PF01527; ISMca2, transposase, OrfA 268649 3103504 MCA0282 Methylococcus capsulatus str. Bath ISMca2, transposase, OrfA YP_112816.1 268287 R 243233 CDS YP_112817.1 53802443 3102832 complement(268869..269183) 1 NC_002977.6 identified by match to protein family HMM PF00543; nitrogen regulatory protein P-II 269183 3102832 MCA0283 Methylococcus capsulatus str. Bath nitrogen regulatory protein P-II YP_112817.1 268869 R 243233 CDS YP_112818.1 53802442 3104886 complement(269243..270799) 1 NC_002977.6 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; outer membrane efflux family protein 270799 3104886 MCA0284 Methylococcus capsulatus str. Bath outer membrane efflux family protein YP_112818.1 269243 R 243233 CDS YP_112819.1 53802432 3104762 complement(270838..273285) 1 NC_002977.6 PBS lyase 273285 3104762 MCA0285 Methylococcus capsulatus str. Bath PBS lyase YP_112819.1 270838 R 243233 CDS YP_112820.1 53802431 3102833 complement(273318..277352) 1 NC_002977.6 hypothetical protein 277352 3102833 MCA0286 Methylococcus capsulatus str. Bath hypothetical protein YP_112820.1 273318 R 243233 CDS YP_112821.1 53802430 3103180 complement(277683..278945) 1 NC_002977.6 identified by similarity to SP:P13034; match to protein family HMM PF00037; ferredoxin, 4Fe-4S 278945 3103180 MCA0287 Methylococcus capsulatus str. Bath ferredoxin, 4Fe-4S YP_112821.1 277683 R 243233 CDS YP_112822.1 53802429 3102124 279607..280839 1 NC_002977.6 identified by match to protein family HMM PF01464; transglycosylase 280839 3102124 MCA0288 Methylococcus capsulatus str. Bath transglycosylase YP_112822.1 279607 D 243233 CDS YP_112823.1 53802428 3104826 complement(280836..281249) 1 NC_002977.6 identified by match to protein family HMM PF00383; zinc-binding domain-containing protein 281249 yfhC 3104826 yfhC Methylococcus capsulatus str. Bath zinc-binding domain-containing protein YP_112823.1 280836 R 243233 CDS YP_112824.1 53802427 3102555 complement(281291..282865) 1 NC_002977.6 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 282865 guaA 3102555 guaA Methylococcus capsulatus str. Bath GMP synthase YP_112824.1 281291 R 243233 CDS YP_112825.1 53802426 3102931 complement(282887..284350) 1 NC_002977.6 identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302; inosine-5'-monophosphate dehydrogenase 284350 guaB 3102931 guaB Methylococcus capsulatus str. Bath inosine-5'-monophosphate dehydrogenase YP_112825.1 282887 R 243233 CDS YP_112826.1 53802425 3104221 complement(284463..285371) 1 NC_002977.6 identified by similarity to OMNI:NTL02ML5888; hypothetical protein 285371 3104221 MCA0292 Methylococcus capsulatus str. Bath hypothetical protein YP_112826.1 284463 R 243233 CDS YP_112827.1 53802416 3102123 complement(285423..287555) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04929; match to protein family HMM PF04055; hypothetical protein 287555 3102123 MCA0293 Methylococcus capsulatus str. Bath hypothetical protein YP_112827.1 285423 R 243233 CDS YP_112828.1 53802415 3102354 complement(287634..288080) 1 NC_002977.6 hypothetical protein 288080 3102354 MCA0294 Methylococcus capsulatus str. Bath hypothetical protein YP_112828.1 287634 R 243233 CDS YP_112829.1 53802414 3102361 complement(288174..288935) 1 NC_002977.6 identified by similarity to GP:14456716; match to protein family HMM PF04896; methane monooxygenase subunit C 288935 pmoC3 3102361 pmoC3 Methylococcus capsulatus str. Bath methane monooxygenase subunit C YP_112829.1 288174 R 243233 CDS YP_112830.1 53802413 3102055 289074..291248 1 NC_002977.6 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100; glycogen debranching protein GlgX 291248 glgX 3102055 glgX Methylococcus capsulatus str. Bath glycogen debranching protein GlgX YP_112830.1 289074 D 243233 CDS YP_112831.1 53802412 3103956 complement(291249..292061) 1 NC_002977.6 identified by similarity to OMNI:NTL01SMB00167; hypothetical protein 292061 3103956 MCA0297 Methylococcus capsulatus str. Bath hypothetical protein YP_112831.1 291249 R 243233 CDS YP_112832.1 53802411 3103774 complement(292103..293152) 1 NC_002977.6 identified by similarity to OMNI:NTL01SMB00168; match to protein family HMM PF00753; metallo-beta-lactamase 293152 3103774 MCA0298 Methylococcus capsulatus str. Bath metallo-beta-lactamase YP_112832.1 292103 R 243233 CDS YP_112833.1 53802410 3103066 293402..295261 1 NC_002977.6 identified by similarity to SP:P15279; match to protein family HMM PF01011; methanol dehydrogenase, large subunit 295261 3103066 MCA0299 Methylococcus capsulatus str. Bath methanol dehydrogenase, large subunit YP_112833.1 293402 D 243233 CDS YP_112834.1 53802402 3102377 295433..296287 1 NC_002977.6 identified by similarity to GP:1657793; MxaJ protein 296287 3102377 MCA0300 Methylococcus capsulatus str. Bath MxaJ protein YP_112834.1 295433 D 243233 CDS YP_112835.1 53802401 3103134 complement(296343..297833) 1 NC_002977.6 identified by similarity to SP:P14825; match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499; lysyl-tRNA synthetase 297833 lysS 3103134 lysS Methylococcus capsulatus str. Bath lysyl-tRNA synthetase YP_112835.1 296343 R 243233 CDS YP_112836.1 53802400 3103292 complement(join(297838..298860,298862..298936)) 1 NC_002977.6 identified by similarity to SP:P07012; match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020; peptide chain release factor 2, programmed frameshift 298936 prfB 3103292 prfB Methylococcus capsulatus str. Bath peptide chain release factor 2, programmed frameshift YP_112836.1 297838 R 243233 CDS YP_112837.1 53802399 3104011 complement(299025..299537) 1 NC_002977.6 identified by match to protein family HMM PF05229; lipoprotein 299537 3104011 MCA0303 Methylococcus capsulatus str. Bath lipoprotein YP_112837.1 299025 R 243233 CDS YP_112838.1 53802398 3102841 complement(299534..301900) 1 NC_002977.6 identified by similarity to SP:P30130; match to protein family HMM PF00577; fimbrial biogenesis protein 301900 3102841 MCA0304 Methylococcus capsulatus str. Bath fimbrial biogenesis protein YP_112838.1 299534 R 243233 CDS YP_112839.1 53802397 3102918 complement(301941..302672) 1 NC_002977.6 identified by similarity to SP:P53520; chaperone protein pmfD 302672 3102918 MCA0305 Methylococcus capsulatus str. Bath chaperone protein pmfD YP_112839.1 301941 R 243233 CDS YP_112840.1 53802396 3102342 complement(302701..303246) 1 NC_002977.6 identified by similarity to SP:P27755; match to protein family HMM PF05229; spore coat protein, late developmental 303246 3102342 MCA0306 Methylococcus capsulatus str. Bath spore coat protein, late developmental YP_112840.1 302701 R 243233 CDS YP_112841.1 53802395 3102105 303488..304588 1 NC_002977.6 identified by match to protein family HMM PF01609; ISMca1, transposase 304588 3102105 MCA0307 Methylococcus capsulatus str. Bath ISMca1, transposase YP_112841.1 303488 D 243233 CDS YP_112842.1 53802386 3103815 305275..305991 1 NC_002977.6 identified by similarity to GP:9950618; match to protein family HMM PF01243; hypothetical protein 305991 3103815 MCA0309 Methylococcus capsulatus str. Bath hypothetical protein YP_112842.1 305275 D 243233 CDS YP_112843.1 53802385 3103825 complement(305998..306705) 1 NC_002977.6 identified by similarity to OMNI:NTL01AT1832; hypothetical protein 306705 3103825 MCA0310 Methylococcus capsulatus str. Bath hypothetical protein YP_112843.1 305998 R 243233 CDS YP_112844.1 53802384 3103826 complement(306856..307128) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA05109; lipoprotein 307128 3103826 MCA0311 Methylococcus capsulatus str. Bath lipoprotein YP_112844.1 306856 R 243233 CDS YP_112845.1 53802383 3104063 307286..307984 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04496; match to protein family HMM PF04402; hypothetical protein 307984 3104063 MCA0312 Methylococcus capsulatus str. Bath hypothetical protein YP_112845.1 307286 D 243233 CDS YP_112846.1 53802382 3104002 308027..309016 1 NC_002977.6 identified by similarity to SP:P25662; match to protein family HMM PF01145; match to protein family HMM TIGR01933; hflK protein 309016 3104002 MCA0313 Methylococcus capsulatus str. Bath hflK protein YP_112846.1 308027 D 243233 CDS YP_112847.1 53802381 3104240 309013..309975 1 NC_002977.6 identified by similarity to SP:P25661; match to protein family HMM PF01145; match to protein family HMM TIGR01932; hflC protein 309975 3104240 MCA0314 Methylococcus capsulatus str. Bath hflC protein YP_112847.1 309013 D 243233 CDS YP_112848.1 53802380 3104062 complement(310065..310457) 1 NC_002977.6 hypothetical protein 310457 3104062 MCA0315 Methylococcus capsulatus str. Bath hypothetical protein YP_112848.1 310065 R 243233 CDS YP_112849.1 53802379 3103358 310664..311194 1 NC_002977.6 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 311194 3103358 MCA0316 Methylococcus capsulatus str. Bath TetR family transcriptional regulator YP_112849.1 310664 D 243233 CDS YP_112850.1 53802378 3103385 311255..312634 1 NC_002977.6 selenium-binding protein 312634 3103385 MCA0317 Methylococcus capsulatus str. Bath selenium-binding protein YP_112850.1 311255 D 243233 CDS YP_112851.1 53802369 3102742 312660..314540 1 NC_002977.6 identified by similarity to SP:Q49128; match to protein family HMM PF03150; SCO1/SenC family protein/methylamine utilization protein MauG 314540 3102742 MCA0318 Methylococcus capsulatus str. Bath SCO1/SenC family protein/methylamine utilization protein MauG YP_112851.1 312660 D 243233 CDS YP_112852.1 53802368 3103666 complement(314929..316158) 1 NC_002977.6 identified by similarity to SP:P36670; match to protein family HMM PF07690; AmpG protein 316158 3103666 MCA0320 Methylococcus capsulatus str. Bath AmpG protein YP_112852.1 314929 R 243233 CDS YP_112853.1 53802367 3102777 complement(316142..316915) 1 NC_002977.6 identified by similarity to SP:P37454; match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III 316915 xth-1 3102777 xth-1 Methylococcus capsulatus str. Bath exodeoxyribonuclease III YP_112853.1 316142 R 243233 CDS YP_112854.1 53802366 3102778 317030..317233 1 NC_002977.6 identified by similarity to SP:P02432; match to protein family HMM PF01197; match to protein family HMM TIGR00105; 50S ribosomal protein L31 317233 rpmE 3102778 rpmE Methylococcus capsulatus str. Bath 50S ribosomal protein L31 YP_112854.1 317030 D 243233 CDS YP_112855.1 53802365 3102779 complement(317269..317880) 1 NC_002977.6 identified by similarity to GP:17429805; hypothetical protein 317880 3102779 MCA0323 Methylococcus capsulatus str. Bath hypothetical protein YP_112855.1 317269 R 243233 CDS YP_112856.1 53802364 3102782 complement(317896..320388) 1 NC_002977.6 identified by similarity to SP:P02918; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; penicillin-binding protein 1A 320388 mrcA 3102782 mrcA Methylococcus capsulatus str. Bath penicillin-binding protein 1A YP_112856.1 317896 R 243233 CDS YP_112857.1 53802363 3102784 320584..321726 1 NC_002977.6 identified by similarity to OMNI:NTL03PA05045; match to protein family HMM TIGR01175; type 4 fimbrial biogenesis protein PilM 321726 pilM 3102784 pilM Methylococcus capsulatus str. Bath type 4 fimbrial biogenesis protein PilM YP_112857.1 320584 D 243233 CDS YP_112858.1 53802362 3102805 321696..322331 1 NC_002977.6 identified by similarity to OMNI:NTL03PA05044; match to protein family HMM PF05137; type 4 fimbrial biogenesis protein PilN 322331 pilN 3102805 pilN Methylococcus capsulatus str. Bath type 4 fimbrial biogenesis protein PilN YP_112858.1 321696 D 243233 CDS YP_112859.1 53802352 3102112 322328..322966 1 NC_002977.6 identified by similarity to OMNI:NTL03PA05043; match to protein family HMM PF04350; type 4 fimbrial biogenesis protein PilO 322966 pilO 3102112 pilO Methylococcus capsulatus str. Bath type 4 fimbrial biogenesis protein PilO YP_112859.1 322328 D 243233 CDS YP_112860.1 53802351 3102551 322966..323508 1 NC_002977.6 identified by similarity to OMNI:NTL03PA05042; match to protein family HMM PF04351; type 4 fimbrial biogenesis protein PilP 323508 pilP 3102551 pilP Methylococcus capsulatus str. Bath type 4 fimbrial biogenesis protein PilP YP_112860.1 322966 D 243233 CDS YP_112861.1 53802350 3102362 323495..325684 1 NC_002977.6 identified by similarity to SP:P34750; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; fimbrial assembly protein PilQ 325684 pilQ 3102362 pilQ Methylococcus capsulatus str. Bath fimbrial assembly protein PilQ YP_112861.1 323495 D 243233 CDS YP_112862.1 53802349 3102291 325746..326285 1 NC_002977.6 identified by similarity to SP:P24167; match to protein family HMM PF01202; shikimate kinase 326285 aroK 3102291 aroK Methylococcus capsulatus str. Bath shikimate kinase YP_112862.1 325746 D 243233 CDS YP_112863.1 53802348 3102062 326282..327361 1 NC_002977.6 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 327361 aroB 3102062 aroB Methylococcus capsulatus str. Bath 3-dehydroquinate synthase YP_112863.1 326282 D 243233 CDS YP_112864.1 53802347 3102300 327389..328441 1 NC_002977.6 identified by match to protein family HMM PF01208; match to protein family HMM TIGR01464; uroporphyrinogen decarboxylase 328441 hemE 3102300 hemE Methylococcus capsulatus str. Bath uroporphyrinogen decarboxylase YP_112864.1 327389 D 243233 CDS YP_112865.1 53802346 3102310 328446..329015 1 NC_002977.6 identified by similarity to OMNI:MT1739; match to protein family HMM PF00293; MutT/nudix family protein 329015 3102310 MCA0333 Methylococcus capsulatus str. Bath MutT/nudix family protein YP_112865.1 328446 D 243233 CDS YP_112866.1 53802345 3102316 complement(328991..329356) 1 NC_002977.6 identified by similarity to GP:14026911; match to protein family HMM PF04343; hypothetical protein 329356 3102316 MCA0334 Methylococcus capsulatus str. Bath hypothetical protein YP_112866.1 328991 R 243233 CDS YP_112867.1 53802336 3102367 complement(329353..333048) 1 NC_002977.6 identified by similarity to GP:15619037; hypothetical protein 333048 3102367 MCA0335 Methylococcus capsulatus str. Bath hypothetical protein YP_112867.1 329353 R 243233 CDS YP_112868.1 53802335 3102339 333232..333573 1 NC_002977.6 hypothetical protein 333573 3102339 MCA0336 Methylococcus capsulatus str. Bath hypothetical protein YP_112868.1 333232 D 243233 CDS YP_112869.1 53802334 3102149 333864..335336 1 NC_002977.6 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate phosphodiesterase 335336 3102149 MCA0337 Methylococcus capsulatus str. Bath diguanylate phosphodiesterase YP_112869.1 333864 D 243233 CDS YP_112870.1 53802333 3104752 complement(335452..338361) 1 NC_002977.6 identified by similarity to GP:4325062; cytochrome c5530 family protein 338361 3104752 MCA0338 Methylococcus capsulatus str. Bath cytochrome c5530 family protein YP_112870.1 335452 R 243233 CDS YP_112871.1 53802521 3104742 338735..340015 1 NC_002977.6 identified by similarity to GP:17428048; match to protein family HMM PF02646; hypothetical protein 340015 3104742 MCA0339 Methylococcus capsulatus str. Bath hypothetical protein YP_112871.1 338735 D 243233 CDS YP_112872.1 53802512 3102661 complement(340020..341930) 1 NC_002977.6 identified by similarity to GP:17133197; hypothetical protein 341930 3102661 MCA0340 Methylococcus capsulatus str. Bath hypothetical protein YP_112872.1 340020 R 243233 CDS YP_112873.1 53802511 3105065 341996..342505 1 NC_002977.6 hypothetical protein 342505 3105065 MCA0341 Methylococcus capsulatus str. Bath hypothetical protein YP_112873.1 341996 D 243233 CDS YP_112874.1 53802510 3104004 342615..344225 1 NC_002977.6 identified by match to protein family HMM PF00488; MutS family DNA mismatch repair protein 344225 3104004 MCA0342 Methylococcus capsulatus str. Bath MutS family DNA mismatch repair protein YP_112874.1 342615 D 243233 CDS YP_112875.1 53802509 3102760 344225..344995 1 NC_002977.6 identified by similarity to SP:P05446; match to protein family HMM PF00753; metallo-beta-lactamase 344995 3102760 MCA0343 Methylococcus capsulatus str. Bath metallo-beta-lactamase YP_112875.1 344225 D 243233 CDS YP_112876.1 53802508 3102749 complement(344992..346389) 1 NC_002977.6 identified by match to protein family HMM PF00324; amino acid permease 346389 3102749 MCA0344 Methylococcus capsulatus str. Bath amino acid permease YP_112876.1 344992 R 243233 CDS YP_112877.1 53802507 3103999 346923..347954 1 NC_002977.6 identified by similarity to SP:P14532; match to protein family HMM PF03150; cytochrome c peroxidase 347954 3103999 MCA0345 Methylococcus capsulatus str. Bath cytochrome c peroxidase YP_112877.1 346923 D 243233 CDS YP_112878.1 53802506 3102176 complement(347951..349270) 1 NC_002977.6 hypothetical protein 349270 3102176 MCA0346 Methylococcus capsulatus str. Bath hypothetical protein YP_112878.1 347951 R 243233 CDS YP_112879.1 53802505 3103036 complement(349596..350375) 1 NC_002977.6 hypothetical protein 350375 3103036 MCA0347 Methylococcus capsulatus str. Bath hypothetical protein YP_112879.1 349596 R 243233 CDS YP_112880.1 53802495 3102432 complement(350468..351934) 1 NC_002977.6 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 351934 3102432 MCA0348 Methylococcus capsulatus str. Bath glycine dehydrogenase subunit 2 YP_112880.1 350468 R 243233 CDS YP_112881.1 53802494 3105095 complement(351928..353289) 1 NC_002977.6 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 353289 3105095 MCA0349 Methylococcus capsulatus str. Bath glycine dehydrogenase subunit 1 YP_112881.1 351928 R 243233 CDS YP_112882.1 53802493 3105022 complement(353383..354465) 1 NC_002977.6 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 354465 gcvT 3105022 gcvT Methylococcus capsulatus str. Bath glycine cleavage system aminomethyltransferase T YP_112882.1 353383 R 243233 CDS YP_112883.1 53802492 3104581 354603..354929 1 NC_002977.6 identified by match to protein family HMM PF02627; carboxymuconolactone decarboxylase domain-containing protein 354929 3104581 MCA0351 Methylococcus capsulatus str. Bath carboxymuconolactone decarboxylase domain-containing protein YP_112883.1 354603 D 243233 CDS YP_112884.1 53802491 3104906 354999..355358 1 NC_002977.6 identified by similarity to OMNI:AF0187; match to protein family HMM PF02635; hypothetical protein 355358 3104906 MCA0352 Methylococcus capsulatus str. Bath hypothetical protein YP_112884.1 354999 D 243233 CDS YP_112885.1 53802490 3103249 355418..355876 1 NC_002977.6 identified by similarity to OMNI:DR0566; match to protein family HMM PF04543; hypothetical protein 355876 3103249 MCA0353 Methylococcus capsulatus str. Bath hypothetical protein YP_112885.1 355418 D 243233 CDS YP_112886.1 53802489 3104026 complement(355962..357491) 1 NC_002977.6 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 357491 ilvA 3104026 ilvA Methylococcus capsulatus str. Bath threonine dehydratase YP_112886.1 355962 R 243233 CDS YP_112887.1 53802479 3103694 357582..358238 1 NC_002977.6 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 358238 rpiA 3103694 rpiA Methylococcus capsulatus str. Bath ribose-5-phosphate isomerase A YP_112887.1 357582 D 243233 CDS YP_112888.1 53802478 3105060 complement(358368..358925) 1 NC_002977.6 lipoprotein 358925 3105060 MCA0356 Methylococcus capsulatus str. Bath lipoprotein YP_112888.1 358368 R 243233 CDS YP_112889.1 53802477 3104950 complement(359089..359472) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00341; hypothetical protein 359472 3104950 MCA0357 Methylococcus capsulatus str. Bath hypothetical protein YP_112889.1 359089 R 243233 CDS YP_112890.1 53802476 3103393 complement(359519..360094) 1 NC_002977.6 identified by similarity to SP:P05100; match to protein family HMM PF03352; DNA-3-methyladenine glycosylase I 360094 tag 3103393 tag Methylococcus capsulatus str. Bath DNA-3-methyladenine glycosylase I YP_112890.1 359519 R 243233 CDS YP_112891.1 53802475 3104707 complement(360091..360924) 1 NC_002977.6 identified by match to protein family HMM PF02231; phosphotransferase domain-containing protein 360924 3104707 MCA0359 Methylococcus capsulatus str. Bath phosphotransferase domain-containing protein YP_112891.1 360091 R 243233 CDS YP_112892.1 53802474 3104751 complement(360930..361481) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA03755; match to protein family HMM PF00293; MutT/nudix family protein 361481 3104751 MCA0360 Methylococcus capsulatus str. Bath MutT/nudix family protein YP_112892.1 360930 R 243233 CDS YP_112893.1 53802473 3102772 361715..362998 1 NC_002977.6 identified by match to protein family HMM PF01071; match to protein family HMM PF02842; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877; phosphoribosylamine--glycine ligase 362998 purD 3102772 purD Methylococcus capsulatus str. Bath phosphoribosylamine--glycine ligase YP_112893.1 361715 D 243233 CDS YP_112894.1 53802472 3103372 364331..366049 1 NC_002977.6 identified by similarity to SP:P43671; paraquat-inducible protein B 366049 pqiB 3103372 pqiB Methylococcus capsulatus str. Bath paraquat-inducible protein B YP_112894.1 364331 D 243233 CDS YP_112895.1 53802471 3103141 366046..366651 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04964; match to protein family HMM PF03886; lipoprotein 366651 3103141 MCA0364 Methylococcus capsulatus str. Bath lipoprotein YP_112895.1 366046 D 243233 CDS YP_112896.1 53802470 3104229 complement(366700..368109) 1 NC_002977.6 identified by similarity to GP:15808730; hypothetical protein 368109 3104229 MCA0365 Methylococcus capsulatus str. Bath hypothetical protein YP_112896.1 366700 R 243233 CDS YP_112897.1 53802469 3104684 complement(368221..369297) 1 NC_002977.6 hypothetical protein 369297 3104684 MCA0366 Methylococcus capsulatus str. Bath hypothetical protein YP_112897.1 368221 R 243233 CDS YP_112898.1 53802468 3102769 complement(369651..372014) 1 NC_002977.6 identified by match to protein family HMM PF02012; BNR repeat-containing protein 372014 3102769 MCA0367 Methylococcus capsulatus str. Bath BNR repeat-containing protein YP_112898.1 369651 R 243233 CDS YP_112899.1 53802467 3104697 372168..373259 1 NC_002977.6 identified by match to protein family HMM PF00246; zinc-binding domain-containing protein 373259 3104697 MCA0368 Methylococcus capsulatus str. Bath zinc-binding domain-containing protein YP_112899.1 372168 D 243233 CDS YP_112900.1 53802466 3103915 373252..374043 1 NC_002977.6 identified by match to protein family HMM PF00561; alpha/beta hydrolase 374043 3103915 MCA0369 Methylococcus capsulatus str. Bath alpha/beta hydrolase YP_112900.1 373252 D 243233 CDS YP_112901.1 53802465 3104003 complement(374530..375375) 1 NC_002977.6 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 375375 3104003 MCA0370 Methylococcus capsulatus str. Bath AraC family transcriptional regulator YP_112901.1 374530 R 243233 CDS YP_112902.1 53802464 3102498 375497..375859 1 NC_002977.6 hypothetical protein 375859 3102498 MCA0371 Methylococcus capsulatus str. Bath hypothetical protein YP_112902.1 375497 D 243233 CDS YP_112903.1 53802456 3103924 complement(375826..376386) 1 NC_002977.6 identified by similarity to GP:14027356; match to protein family HMM PF01066; CDP-alcohol phosphatidyltransferase 376386 3103924 MCA0372 Methylococcus capsulatus str. Bath CDP-alcohol phosphatidyltransferase YP_112903.1 375826 R 243233 CDS YP_112904.1 53802455 3102463 376570..377607 1 NC_002977.6 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 377607 purM 3102463 purM Methylococcus capsulatus str. Bath phosphoribosylaminoimidazole synthetase YP_112904.1 376570 D 243233 CDS YP_112905.1 53802454 3102269 377637..378368 1 NC_002977.6 identified by similarity to OMNI:CC0469; match to protein family HMM PF00535; glycosyl transferase group 2 family protein 378368 3102269 MCA0374 Methylococcus capsulatus str. Bath glycosyl transferase group 2 family protein YP_112905.1 377637 D 243233 CDS YP_112906.1 53802453 3102231 378381..378755 1 NC_002977.6 hypothetical protein 378755 3102231 MCA0375 Methylococcus capsulatus str. Bath hypothetical protein YP_112906.1 378381 D 243233 CDS YP_112907.1 53802452 3102279 378759..379928 1 NC_002977.6 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 379928 nadA 3102279 nadA Methylococcus capsulatus str. Bath quinolinate synthetase YP_112907.1 378759 D 243233 CDS YP_112908.1 53802451 3103864 379938..380405 1 NC_002977.6 SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 380405 3103864 MCA0377 Methylococcus capsulatus str. Bath rRNA large subunit methyltransferase YP_112908.1 379938 D 243233 CDS YP_112909.1 53802450 3103726 380410..381018 1 NC_002977.6 identified by similarity to SP:Q02169; match to protein family HMM PF02545; match to protein family HMM TIGR00172; maf protein 381018 maf-1 3103726 maf-1 Methylococcus capsulatus str. Bath maf protein YP_112909.1 380410 D 243233 CDS YP_112910.1 53802441 3103406 381015..382469 1 NC_002977.6 identified by similarity to SP:P25537; match to protein family HMM PF00575; match to protein family HMM TIGR00757; ribonuclease G 382469 cafA 3103406 cafA Methylococcus capsulatus str. Bath ribonuclease G YP_112910.1 381015 D 243233 CDS YP_112911.1 53802440 3102107 382586..386383 1 NC_002977.6 identified by similarity to OMNI:NTL02EC4081; match to protein family HMM TIGR02099; hypothetical protein 386383 3102107 MCA0380 Methylococcus capsulatus str. Bath hypothetical protein YP_112911.1 382586 D 243233 CDS YP_112912.1 53802439 3104439 386432..387253 1 NC_002977.6 identified by similarity to OMNI:NTL01NM01917; match to protein family HMM PF00795; carbon-nitrogen family hydrolase 387253 3104439 MCA0381 Methylococcus capsulatus str. Bath carbon-nitrogen family hydrolase YP_112912.1 386432 D 243233 CDS YP_112913.1 53802438 3102246 387283..388728 1 NC_002977.6 identified by similarity to SP:P46473; match to protein family HMM PF01523; tldD protein 388728 tldD 3102246 tldD Methylococcus capsulatus str. Bath tldD protein YP_112913.1 387283 D 243233 CDS YP_112914.1 53802437 3104599 388721..390055 1 NC_002977.6 identified by similarity to SP:P24231; match to protein family HMM PF01523; pmbA protein 390055 pmbA 3104599 pmbA Methylococcus capsulatus str. Bath pmbA protein YP_112914.1 388721 D 243233 CDS YP_112915.1 53802436 3105096 complement(390121..390441) 1 NC_002977.6 hypothetical protein 390441 3105096 MCA0384 Methylococcus capsulatus str. Bath hypothetical protein YP_112915.1 390121 R 243233 CDS YP_112916.1 53802435 3102315 390880..391359 1 NC_002977.6 identified by similarity to SP:P41053; match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence/damage inducible protein CinA 391359 3102315 MCA0385 Methylococcus capsulatus str. Bath competence/damage inducible protein CinA YP_112916.1 390880 D 243233 CDS YP_112917.1 53802434 3103217 391340..391912 1 NC_002977.6 identified by similarity to SP:P37025; match to protein family HMM PF02834; match to protein family HMM TIGR02258; 2'-5' RNA ligase 391912 3103217 MCA0386 Methylococcus capsulatus str. Bath 2'-5' RNA ligase YP_112917.1 391340 D 243233 CDS YP_112918.1 53802433 3104748 391945..392988 1 NC_002977.6 identified by similarity to SP:P18076; match to protein family HMM PF00154; match to protein family HMM TIGR02012; recombinase A 392988 recA 3104748 recA Methylococcus capsulatus str. Bath recombinase A YP_112918.1 391945 D 243233 CDS YP_112919.1 53802424 3103994 393039..393455 1 NC_002977.6 identified by similarity to SP:P37861; match to protein family HMM PF02631; recX protein 393455 recX 3103994 recX Methylococcus capsulatus str. Bath recX protein YP_112919.1 393039 D 243233 CDS YP_112920.1 53802423 3103898 393475..396078 1 NC_002977.6 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 396078 alaS 3103898 alaS Methylococcus capsulatus str. Bath alanyl-tRNA synthetase YP_112920.1 393475 D 243233 CDS YP_112921.1 53802422 3103629 396113..397342 1 NC_002977.6 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 397342 3103629 MCA0390 Methylococcus capsulatus str. Bath aspartate kinase YP_112921.1 396113 D 243233 CDS YP_112922.1 53802421 3103288 397493..397687 1 NC_002977.6 identified by similarity to SP:P31803; match to protein family HMM PF02599; match to protein family HMM TIGR00202; carbon storage regulator 397687 3103288 MCA0391 Methylococcus capsulatus str. Bath carbon storage regulator YP_112922.1 397493 D 243233 CDS YP_112923.1 53802420 3103114 397949..398203 1 NC_002977.6 identified by similarity to SP:P02372; match to protein family HMM PF00886; match to protein family HMM TIGR00002; 30S ribosomal protein S16 398203 rpsP 3103114 rpsP Methylococcus capsulatus str. Bath 30S ribosomal protein S16 YP_112923.1 397949 D 243233 CDS YP_112924.1 53802419 3102757 398203..398721 1 NC_002977.6 identified by similarity to SP:P21504; match to protein family HMM PF01782; match to protein family HMM PF05239; match to protein family HMM TIGR02273; 16S rRNA-processing protein RimM 398721 rimM 3102757 rimM Methylococcus capsulatus str. Bath 16S rRNA-processing protein RimM YP_112924.1 398203 D 243233 CDS YP_112925.1 53802418 3102854 398738..399493 1 NC_002977.6 identified by similarity to SP:P07020; match to protein family HMM PF01746; match to protein family HMM TIGR00088; tRNA (guanine-N1)-methyltransferase 399493 trmD 3102854 trmD Methylococcus capsulatus str. Bath tRNA (guanine-N1)-methyltransferase YP_112925.1 398738 D 243233 CDS YP_112926.1 53802417 3102493 399498..399842 1 NC_002977.6 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 399842 rplS 3102493 rplS Methylococcus capsulatus str. Bath 50S ribosomal protein L19 YP_112926.1 399498 D 243233 CDS YP_112927.1 53802409 3103749 399926..400855 1 NC_002977.6 identified by similarity to SP:P21891; match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225; tyrosine recombinase XerD 400855 xerD 3103749 xerD Methylococcus capsulatus str. Bath tyrosine recombinase XerD YP_112927.1 399926 D 243233 CDS YP_112928.1 53802408 3103753 400872..401654 1 NC_002977.6 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 401654 lpxA-1 3103753 lpxA-1 Methylococcus capsulatus str. Bath UDP-N-acetylglucosamine acyltransferase YP_112928.1 400872 D 243233 CDS YP_112929.1 53802407 3103851 401680..402639 1 NC_002977.6 identified by similarity to GP:1001423; match to protein family HMM PF01408; match to protein family HMM PF02894; Gfo/Idh/MocA family oxidoreductase 402639 3103851 MCA0398 Methylococcus capsulatus str. Bath Gfo/Idh/MocA family oxidoreductase YP_112929.1 401680 D 243233 CDS YP_112930.1 53802406 3103537 402636..403730 1 NC_002977.6 identified by match to protein family HMM PF01041; aminotransferase 403730 3103537 MCA0399 Methylococcus capsulatus str. Bath aminotransferase YP_112930.1 402636 D 243233 CDS YP_112931.1 53802405 3102993 403723..404877 1 NC_002977.6 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 404877 lpxB 3102993 lpxB Methylococcus capsulatus str. Bath lipid-A-disaccharide synthase YP_112931.1 403723 D 243233 CDS YP_112932.1 53802404 3102750 404950..405450 1 NC_002977.6 identified by similarity to OMNI:CC2202; match to protein family HMM PF01272; transcription elongation factor 405450 3102750 MCA0401 Methylococcus capsulatus str. Bath transcription elongation factor YP_112932.1 404950 D 243233 CDS YP_112933.1 53802403 3102916 405463..406200 1 NC_002977.6 identified by similarity to OMNI:DR2490; match to protein family HMM PF01863; hypothetical protein 406200 3102916 MCA0402 Methylococcus capsulatus str. Bath hypothetical protein YP_112933.1 405463 D 243233 CDS YP_112934.1 53802394 3103745 406200..406688 1 NC_002977.6 identified by similarity to GP:2327006; suppressor for copper-sensitivity D 406688 3103745 MCA0403 Methylococcus capsulatus str. Bath suppressor for copper-sensitivity D YP_112934.1 406200 D 243233 CDS YP_112935.1 53802393 3103689 407104..407259 1 NC_002977.6 type I restriction-modification system M subunit 407259 3103689 MCA0404 Methylococcus capsulatus str. Bath type I restriction-modification system M subunit YP_112935.1 407104 D 243233 CDS YP_112936.1 53802392 3102964 407486..408094 1 NC_002977.6 identified by similarity to OMNI:NTL01SMA00006; hypothetical protein 408094 3102964 MCA0405 Methylococcus capsulatus str. Bath hypothetical protein YP_112936.1 407486 D 243233 CDS YP_112937.1 53802391 3104360 408679..409215 1 NC_002977.6 lipoprotein 409215 3104360 MCA0406 Methylococcus capsulatus str. Bath lipoprotein YP_112937.1 408679 D 243233 CDS YP_112938.1 53802390 3103929 409353..409721 1 NC_002977.6 hypothetical protein 409721 3103929 MCA0407 Methylococcus capsulatus str. Bath hypothetical protein YP_112938.1 409353 D 243233 CDS YP_112939.1 53802389 3103832 409964..410731 1 NC_002977.6 identified by similarity to OMNI:NTL01SS00205; hypothetical protein 410731 3103832 MCA0408 Methylococcus capsulatus str. Bath hypothetical protein YP_112939.1 409964 D 243233 CDS YP_112940.1 53802388 3103807 410752..411822 1 NC_002977.6 lipoprotein 411822 3103807 MCA0409 Methylococcus capsulatus str. Bath lipoprotein YP_112940.1 410752 D 243233 CDS YP_112941.1 53802387 3103809 411815..412087 1 NC_002977.6 hypothetical protein 412087 3103809 MCA0410 Methylococcus capsulatus str. Bath hypothetical protein YP_112941.1 411815 D 243233 CDS YP_112942.1 53802377 3103407 412094..412390 1 NC_002977.6 hypothetical protein 412390 3103407 MCA0411 Methylococcus capsulatus str. Bath hypothetical protein YP_112942.1 412094 D 243233 CDS YP_112943.1 53802376 3103394 412474..413778 1 NC_002977.6 identified by similarity to SP:P40680; match to protein family HMM PF01476; match to protein family HMM PF03734; LysM domain-containing protein 413778 3103394 MCA0412 Methylococcus capsulatus str. Bath LysM domain-containing protein YP_112943.1 412474 D 243233 CDS YP_112944.1 53802375 3103494 complement(413786..414334) 1 NC_002977.6 identified by similarity to OMNI:NTL01SM00917; match to protein family HMM PF02622; hypothetical protein 414334 3103494 MCA0413 Methylococcus capsulatus str. Bath hypothetical protein YP_112944.1 413786 R 243233 CDS YP_112945.1 53802374 3103739 complement(414444..414761) 1 NC_002977.6 identified by similarity to SP:P45806; match to protein family HMM PF07119; hypothetical protein 414761 3103739 MCA0414 Methylococcus capsulatus str. Bath hypothetical protein YP_112945.1 414444 R 243233 CDS YP_112946.1 53802373 3103324 complement(414866..416083) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA01484; hypothetical protein 416083 3103324 MCA0415 Methylococcus capsulatus str. Bath hypothetical protein YP_112946.1 414866 R 243233 CDS YP_112947.1 53802372 3103754 complement(416089..416550) 1 NC_002977.6 identified by similarity to SP:P33925; match to protein family HMM PF03918; cytochrome c-type biogenesis protein CcmH 416550 ccmH 3103754 ccmH Methylococcus capsulatus str. Bath cytochrome c-type biogenesis protein CcmH YP_112947.1 416089 R 243233 CDS YP_112948.1 53802371 3102825 complement(416547..417113) 1 NC_002977.6 identified by similarity to SP:P33926; match to protein family HMM TIGR00385; thiol:disulfide interchange protein DsbE 417113 dsbE-1 3102825 dsbE-1 Methylococcus capsulatus str. Bath thiol:disulfide interchange protein DsbE YP_112948.1 416547 R 243233 CDS YP_112949.1 53802370 3102767 complement(417110..419083) 1 NC_002977.6 identified by similarity to SP:P33927; match to protein family HMM PF01578; match to protein family HMM TIGR00353; cytochrome c-type biogenesis protein CcmF 419083 ccmF 3102767 ccmF Methylococcus capsulatus str. Bath cytochrome c-type biogenesis protein CcmF YP_112949.1 417110 R 243233 CDS YP_112950.1 53802361 3102808 complement(419080..419541) 1 NC_002977.6 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 419541 ccmE 3102808 ccmE Methylococcus capsulatus str. Bath cytochrome c-type biogenesis protein CcmE YP_112950.1 419080 R 243233 CDS YP_112951.1 53802360 3102809 complement(419538..419750) 1 NC_002977.6 identified by similarity to SP:P45035; match to protein family HMM PF04995; heme exporter protein CcmD 419750 3102809 MCA0420 Methylococcus capsulatus str. Bath heme exporter protein CcmD YP_112951.1 419538 R 243233 CDS YP_112952.1 53802359 3102814 420130..423453 1 NC_002977.6 cytochrome c5530 family protein 423453 3102814 MCA0421 Methylococcus capsulatus str. Bath cytochrome c5530 family protein YP_112952.1 420130 D 243233 CDS YP_112953.1 53802358 3102871 423936..427412 1 NC_002977.6 identified by match to protein family HMM PF00801; cytochrome c5530 427412 3102871 MCA0423 Methylococcus capsulatus str. Bath cytochrome c5530 YP_112953.1 423936 D 243233 CDS YP_112954.1 53802357 3102888 427847..430600 1 NC_002977.6 identified by similarity to GP:4325063; cytochrome c family protein 430600 3102888 MCA0424 Methylococcus capsulatus str. Bath cytochrome c family protein YP_112954.1 427847 D 243233 CDS YP_112955.1 53802356 3102909 430651..430956 1 NC_002977.6 hypothetical protein 430956 3102909 MCA0425 Methylococcus capsulatus str. Bath hypothetical protein YP_112955.1 430651 D 243233 CDS YP_112956.1 53802355 3102920 431006..433756 1 NC_002977.6 cytochrome c family protein 433756 3102920 MCA0426 Methylococcus capsulatus str. Bath cytochrome c family protein YP_112956.1 431006 D 243233 CDS YP_112957.1 53802354 3102465 433828..435240 1 NC_002977.6 hypothetical protein 435240 3102465 MCA0427 Methylococcus capsulatus str. Bath hypothetical protein YP_112957.1 433828 D 243233 CDS YP_112958.1 53802353 3102471 435387..435851 1 NC_002977.6 hypothetical protein 435851 3102471 MCA0428 Methylococcus capsulatus str. Bath hypothetical protein YP_112958.1 435387 D 243233 CDS YP_112959.1 53802344 3102319 complement(436750..437817) 1 NC_002977.6 hypothetical protein 437817 3102319 MCA0429 Methylococcus capsulatus str. Bath hypothetical protein YP_112959.1 436750 R 243233 CDS YP_112960.1 53802343 3102322 437933..438982 1 NC_002977.6 identified by match to protein family HMM PF00037; 4Fe-4S ferredoxin 438982 3102322 MCA0430 Methylococcus capsulatus str. Bath 4Fe-4S ferredoxin YP_112960.1 437933 D 243233 CDS YP_112961.1 53802342 3102324 439302..441953 1 NC_002977.6 identified by match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00667; match to protein family HMM TIGR01931; flavodoxin domain-containing protein 441953 3102324 MCA0431 Methylococcus capsulatus str. Bath flavodoxin domain-containing protein YP_112961.1 439302 D 243233 CDS YP_112962.1 53802341 3102332 441981..442787 1 NC_002977.6 lipoprotein 442787 3102332 MCA0432 Methylococcus capsulatus str. Bath lipoprotein YP_112962.1 441981 D 243233 CDS YP_112963.1 53802340 3102335 442795..445587 1 NC_002977.6 identified by match to protein family HMM PF01436; match to protein family HMM TIGR01905; NHL domain/cytochrome c family protein 445587 3102335 MCA0433 Methylococcus capsulatus str. Bath NHL domain/cytochrome c family protein YP_112963.1 442795 D 243233 CDS YP_112964.1 53802339 3102355 445809..446354 1 NC_002977.6 identified by similarity to SP:P33926; match to protein family HMM TIGR00385; thiol:disulfide interchange protein DsbE 446354 dsbE-2 3102355 dsbE-2 Methylococcus capsulatus str. Bath thiol:disulfide interchange protein DsbE YP_112964.1 445809 D 243233 CDS YP_112965.1 53802338 3102358 446407..447078 1 NC_002977.6 identified by similarity to OMNI:VC1548; hypothetical protein 447078 3102358 MCA0435 Methylococcus capsulatus str. Bath hypothetical protein YP_112965.1 446407 D 243233 CDS YP_112966.1 53802337 3102360 447075..448286 1 NC_002977.6 identified by match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein 448286 3102360 MCA0436 Methylococcus capsulatus str. Bath MotA/TolQ/ExbB proton channel family protein YP_112966.1 447075 D 243233 CDS YP_112967.1 53802327 3104778 448294..448791 1 NC_002977.6 identified by match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein 448791 exbB2 3104778 exbB2 Methylococcus capsulatus str. Bath MotA/TolQ/ExbB proton channel family protein YP_112967.1 448294 D 243233 CDS YP_112968.1 53802326 3104793 448809..449222 1 NC_002977.6 identified by similarity to SP:Q05606; match to protein family HMM PF02472; biopolymer ExbD/TolR family transporter 449222 3104793 MCA0438 Methylococcus capsulatus str. Bath biopolymer ExbD/TolR family transporter YP_112968.1 448809 D 243233 CDS YP_112969.1 53802325 3104806 449378..450025 1 NC_002977.6 identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352; TonB domain-containing protein 450025 3104806 MCA0439 Methylococcus capsulatus str. Bath TonB domain-containing protein YP_112969.1 449378 D 243233 CDS YP_112970.1 53802324 3104816 450523..452850 1 NC_002977.6 identified by similarity to OMNI:NTL03PA03268; match to protein family HMM PF00593; TonB-dependent receptor 452850 3104816 MCA0440 Methylococcus capsulatus str. Bath TonB-dependent receptor YP_112970.1 450523 D 243233 CDS YP_112971.1 53802323 3104835 452874..453620 1 NC_002977.6 identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352; TonB domain-containing protein 453620 3104835 MCA0441 Methylococcus capsulatus str. Bath TonB domain-containing protein YP_112971.1 452874 D 243233 CDS YP_112972.1 53802322 3104840 453638..454294 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00199; match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein 454294 3104840 MCA0442 Methylococcus capsulatus str. Bath MotA/TolQ/ExbB proton channel family protein YP_112972.1 453638 D 243233 CDS YP_112973.1 53802321 3104837 454307..454717 1 NC_002977.6 identified by similarity to SP:P05829; match to protein family HMM PF02472; biopolymer ExbD/TolR family transporter 454717 3104837 MCA0443 Methylococcus capsulatus str. Bath biopolymer ExbD/TolR family transporter YP_112973.1 454307 D 243233 CDS YP_112974.1 53802320 3104938 complement(454935..457010) 1 NC_002977.6 hypothetical protein 457010 3104938 MCA0444 Methylococcus capsulatus str. Bath hypothetical protein YP_112974.1 454935 R 243233 CDS YP_112975.1 53802312 3105077 457009..458079 1 NC_002977.6 hypothetical protein 458079 3105077 MCA0445 Methylococcus capsulatus str. Bath hypothetical protein YP_112975.1 457009 D 243233 CDS YP_112976.1 53802311 3102178 458126..459169 1 NC_002977.6 hypothetical protein 459169 3102178 MCA0446 Methylococcus capsulatus str. Bath hypothetical protein YP_112976.1 458126 D 243233 CDS YP_112977.1 53802310 3105100 459204..460145 1 NC_002977.6 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent DNA-binding response regulator 460145 3105100 MCA0447 Methylococcus capsulatus str. Bath sigma-54 dependent DNA-binding response regulator YP_112977.1 459204 D 243233 CDS YP_112978.1 53802309 3102370 complement(460158..461900) 1 NC_002977.6 identified by similarity to OMNI:DR0505; match to protein family HMM PF00149; match to protein family HMM PF02872; 5'-nucleotidase 461900 3102370 MCA0448 Methylococcus capsulatus str. Bath 5'-nucleotidase YP_112978.1 460158 R 243233 CDS YP_112979.1 53802308 3102323 462237..465332 1 NC_002977.6 identified by similarity to SP:P37278; match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation-transporting ATPase 465332 3102323 MCA0449 Methylococcus capsulatus str. Bath cation-transporting ATPase YP_112979.1 462237 D 243233 CDS YP_112980.1 53802307 3102308 465329..466522 1 NC_002977.6 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 466522 metK-2 3102308 metK-2 Methylococcus capsulatus str. Bath S-adenosylmethionine synthetase YP_112980.1 465329 D 243233 CDS YP_112981.1 53802306 3103091 466525..468546 1 NC_002977.6 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525; heavy metal-transporting ATPase 468546 3103091 MCA0451 Methylococcus capsulatus str. Bath heavy metal-transporting ATPase YP_112981.1 466525 D 243233 CDS YP_112982.1 53802305 3104666 468590..470059 1 NC_002977.6 identified by match to protein family HMM PF00672; HAMP domain-containing protein 470059 3104666 MCA0452 Methylococcus capsulatus str. Bath HAMP domain-containing protein YP_112982.1 468590 D 243233 CDS YP_112983.1 53802297 3104673 470120..470887 1 NC_002977.6 identified by match to protein family HMM PF01656; ParA family protein 470887 3104673 MCA0453 Methylococcus capsulatus str. Bath ParA family protein YP_112983.1 470120 D 243233 CDS YP_112984.1 53802332 3102336 complement(471257..471772) 1 NC_002977.6 hypothetical protein 471772 3102336 MCA0454 Methylococcus capsulatus str. Bath hypothetical protein YP_112984.1 471257 R 243233 CDS YP_112985.1 53802331 3103492 472143..472586 1 NC_002977.6 hypothetical protein 472586 3103492 MCA0455 Methylococcus capsulatus str. Bath hypothetical protein YP_112985.1 472143 D 243233 CDS YP_112986.1 53802330 3104770 complement(474069..475463) 1 NC_002977.6 identified by similarity to OMNI:VCA0960; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 475463 3104770 MCA0456 Methylococcus capsulatus str. Bath diguanylate cyclase YP_112986.1 474069 R 243233 CDS YP_112987.1 53802329 3104774 complement(475468..475872) 1 NC_002977.6 hypothetical protein 475872 3104774 MCA0457 Methylococcus capsulatus str. Bath hypothetical protein YP_112987.1 475468 R 243233 CDS YP_112988.1 53802328 3104773 complement(475925..476371) 1 NC_002977.6 hypothetical protein 476371 3104773 MCA0458 Methylococcus capsulatus str. Bath hypothetical protein YP_112988.1 475925 R 243233 CDS YP_112989.1 53802319 3104946 476610..476897 1 NC_002977.6 hypothetical protein 476897 3104946 MCA0459 Methylococcus capsulatus str. Bath hypothetical protein YP_112989.1 476610 D 243233 CDS YP_112990.1 53802318 3104960 476927..477190 1 NC_002977.6 identified by similarity to GP:1518927; match to protein family HMM PF00037; ferredoxin, 4Fe-4S 477190 3104960 MCA0460 Methylococcus capsulatus str. Bath ferredoxin, 4Fe-4S YP_112990.1 476927 D 243233 CDS YP_112991.1 53802317 3104959 477279..479063 1 NC_002977.6 identified by match to protein family HMM PF00563; match to protein family HMM PF00571; match to protein family HMM PF00990; match to protein family HMM TIGR00254; CBS/GGDEF/EAL domain-containing protein 479063 3104959 MCA0461 Methylococcus capsulatus str. Bath CBS/GGDEF/EAL domain-containing protein YP_112991.1 477279 D 243233 CDS YP_112992.2 161579544 3104971 479244..479759 1 NC_002977.6 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase 479759 cobU 3104971 cobU Methylococcus capsulatus str. Bath adenosylcobinamide kinase YP_112992.2 479244 D 243233 CDS YP_112993.1 53802315 3105004 479756..480796 1 NC_002977.6 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 480796 cobT 3105004 cobT Methylococcus capsulatus str. Bath nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_112993.1 479756 D 243233 CDS YP_112994.1 53802314 3105021 480793..481386 1 NC_002977.6 identified by similarity to SP:P52086; match to protein family HMM PF00300; alpha-ribazole-5'-phosphate phosphatase 481386 3105021 MCA0464 Methylococcus capsulatus str. Bath alpha-ribazole-5'-phosphate phosphatase YP_112994.1 480793 D 243233 CDS YP_112995.1 53802313 3105076 481410..482102 1 NC_002977.6 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 482102 cobS 3105076 cobS Methylococcus capsulatus str. Bath cobalamin synthase YP_112995.1 481410 D 243233 CDS YP_112996.1 53802304 3103931 complement(481965..484082) 1 NC_002977.6 identified by match to protein family HMM PF01841; transglutaminase 484082 3103931 MCA0466 Methylococcus capsulatus str. Bath transglutaminase YP_112996.1 481965 R 243233 CDS YP_112997.1 53802303 3104668 complement(484079..485044) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA02874; match to protein family HMM PF01882; hypothetical protein 485044 3104668 MCA0467 Methylococcus capsulatus str. Bath hypothetical protein YP_112997.1 484079 R 243233 CDS YP_112998.1 53802302 3102933 complement(485058..485969) 1 NC_002977.6 identified by similarity to GP:18892502; moxR protein 485969 3102933 MCA0468 Methylococcus capsulatus str. Bath moxR protein YP_112998.1 485058 R 243233 CDS YP_112999.1 53802301 3102952 complement(486106..486630) 1 NC_002977.6 hypothetical protein 486630 3102952 MCA0469 Methylococcus capsulatus str. Bath hypothetical protein YP_112999.1 486106 R 243233 CDS YP_113000.1 53802300 3102405 486838..487257 1 NC_002977.6 hypothetical protein 487257 3102405 MCA0470 Methylococcus capsulatus str. Bath hypothetical protein YP_113000.1 486838 D 243233 CDS YP_113001.1 53802299 3103361 487376..489127 1 NC_002977.6 identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase 489127 3103361 MCA0471 Methylococcus capsulatus str. Bath dolichyl-phosphate-mannose-protein mannosyltransferase YP_113001.1 487376 D 243233 CDS YP_113002.1 53802298 3103175 489129..491003 1 NC_002977.6 identified by similarity to SP:P54420; match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; asparagine synthetase 491003 3103175 MCA0472 Methylococcus capsulatus str. Bath asparagine synthetase YP_113002.1 489129 D 243233 CDS YP_113003.1 53802296 3105098 complement(491565..495974) 1 NC_002977.6 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614; ATP-dependent DNA helicase UvrD 495974 3105098 MCA0474 Methylococcus capsulatus str. Bath ATP-dependent DNA helicase UvrD YP_113003.1 491565 R 243233 CDS YP_113004.1 53802295 3105097 complement(496823..497605) 1 NC_002977.6 identified by similarity to OMNI:VCA0776; match to protein family HMM PF03746; LamB/YcsF family protein 497605 3105097 MCA0476 Methylococcus capsulatus str. Bath LamB/YcsF family protein YP_113004.1 496823 R 243233 CDS YP_113005.1 53802294 3103574 complement(497614..498606) 1 NC_002977.6 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724; allophanate hydrolase subunit 2 498606 3103574 MCA0477 Methylococcus capsulatus str. Bath allophanate hydrolase subunit 2 YP_113005.1 497614 R 243233 CDS YP_113006.1 53802293 3104469 complement(498603..499292) 1 NC_002977.6 identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370; allophanate hydrolase subunit 1 499292 3104469 MCA0478 Methylococcus capsulatus str. Bath allophanate hydrolase subunit 1 YP_113006.1 498603 R 243233 CDS YP_113007.1 53805178 3103941 501566..502495 1 NC_002977.6 hypothetical protein 502495 3103941 MCA0482 Methylococcus capsulatus str. Bath hypothetical protein YP_113007.1 501566 D 243233 CDS YP_113008.1 53805163 3102449 504135..504551 1 NC_002977.6 identified by similarity to GP:27348307; hypothetical protein 504551 3102449 MCA0484 Methylococcus capsulatus str. Bath hypothetical protein YP_113008.1 504135 D 243233 CDS YP_113009.1 53805162 3102400 complement(504872..505723) 1 NC_002977.6 identified by match to protein family HMM PF00248; aldo/keto reductase 505723 3102400 MCA0485 Methylococcus capsulatus str. Bath aldo/keto reductase YP_113009.1 504872 R 243233 CDS YP_113010.1 53805161 3102399 complement(505734..506360) 1 NC_002977.6 identified by similarity to OMNI:PSPTO5190; hypothetical protein 506360 3102399 MCA0486 Methylococcus capsulatus str. Bath hypothetical protein YP_113010.1 505734 R 243233 CDS YP_113011.1 53805160 3102388 complement(506592..506759) 1 NC_002977.6 hypothetical protein 506759 3102388 MCA0487 Methylococcus capsulatus str. Bath hypothetical protein YP_113011.1 506592 R 243233 CDS YP_113012.1 53805159 3102387 506842..507156 1 NC_002977.6 hypothetical protein 507156 3102387 MCA0488 Methylococcus capsulatus str. Bath hypothetical protein YP_113012.1 506842 D 243233 CDS YP_113013.1 53805158 3102386 complement(507177..507500) 1 NC_002977.6 hypothetical protein 507500 3102386 MCA0489 Methylococcus capsulatus str. Bath hypothetical protein YP_113013.1 507177 R 243233 CDS YP_113014.1 53805157 3104534 complement(507520..508815) 1 NC_002977.6 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter 508815 amt-2 3104534 amt-2 Methylococcus capsulatus str. Bath ammonium transporter YP_113014.1 507520 R 243233 CDS YP_113015.1 53805156 3102376 509163..510329 1 NC_002977.6 identified by similarity to GP:4378852; hypothetical protein 510329 3102376 MCA0491 Methylococcus capsulatus str. Bath hypothetical protein YP_113015.1 509163 D 243233 CDS YP_113016.1 53805155 3102375 510348..510626 1 NC_002977.6 identified by similarity to SP:Q47142; hypothetical protein 510626 3102375 MCA0492 Methylococcus capsulatus str. Bath hypothetical protein YP_113016.1 510348 D 243233 CDS YP_113017.1 53805139 3102150 complement(512192..513094) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04657; match to protein family HMM TIGR01777; hypothetical protein 513094 3102150 MCA0496 Methylococcus capsulatus str. Bath hypothetical protein YP_113017.1 512192 R 243233 CDS YP_113018.1 53805138 3102138 complement(513153..513497) 1 NC_002977.6 identified by similarity to SP:P43335; match to protein family HMM PF01329; pterin-4-alpha-carbinolamine dehydratase 513497 phhB 3102138 phhB Methylococcus capsulatus str. Bath pterin-4-alpha-carbinolamine dehydratase YP_113018.1 513153 R 243233 CDS YP_113019.1 53805137 3102137 complement(513623..514303) 1 NC_002977.6 identified by similarity to OMNI:NTL01SMA00697; match to protein family HMM PF07298; hypothetical protein 514303 3102137 MCA0498 Methylococcus capsulatus str. Bath hypothetical protein YP_113019.1 513623 R 243233 CDS YP_113020.1 53805136 3102118 complement(514456..514827) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04177; match to protein family HMM PF04828; hypothetical protein 514827 3102118 MCA0499 Methylococcus capsulatus str. Bath hypothetical protein YP_113020.1 514456 R 243233 CDS YP_113021.1 53805135 3103310 complement(514805..514972) 1 NC_002977.6 hypothetical protein 514972 3103310 MCA0500 Methylococcus capsulatus str. Bath hypothetical protein YP_113021.1 514805 R 243233 CDS YP_113022.1 53805134 3103309 515916..516851 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00821; match to protein family HMM PF01844; hypothetical protein 516851 3103309 MCA0503 Methylococcus capsulatus str. Bath hypothetical protein YP_113022.1 515916 D 243233 CDS YP_113023.1 53805133 3102094 517168..518325 1 NC_002977.6 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 518325 3102094 MCA0504 Methylococcus capsulatus str. Bath diguanylate cyclase YP_113023.1 517168 D 243233 CDS YP_113024.1 53805132 3102086 complement(518680..518922) 1 NC_002977.6 hypothetical protein 518922 3102086 MCA0505 Methylococcus capsulatus str. Bath hypothetical protein YP_113024.1 518680 R 243233 CDS YP_113025.1 53805131 3102085 518981..519721 1 NC_002977.6 hypothetical protein 519721 3102085 MCA0506 Methylococcus capsulatus str. Bath hypothetical protein YP_113025.1 518981 D 243233 CDS YP_113026.1 53805123 3105041 complement(520441..521064) 1 NC_002977.6 identified by similarity to SP:Q49135; match to protein family HMM PF04961; methenyltetrahydrofolate cyclohydrolase 521064 fchA 3105041 fchA Methylococcus capsulatus str. Bath methenyltetrahydrofolate cyclohydrolase YP_113026.1 520441 R 243233 CDS YP_113027.1 53805251 3102829 521192..522052 1 NC_002977.6 identified by similarity to SP:P55818; methylenetetrahydromethanopterin dehydrogenase/methylenetetrahydrofolate dehydrogenase 522052 3102829 MCA0508 Methylococcus capsulatus str. Bath methylenetetrahydromethanopterin dehydrogenase/methylenetetrahydrofolate dehydrogenase YP_113027.1 521192 D 243233 CDS YP_113028.1 53805250 3103874 complement(522065..523462) 1 NC_002977.6 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 523462 cysS 3103874 cysS Methylococcus capsulatus str. Bath cysteinyl-tRNA synthetase YP_113028.1 522065 R 243233 CDS YP_113029.1 53805249 3103869 complement(523464..524864) 1 NC_002977.6 identified by similarity to SP:P22250; match to protein family HMM PF00749; match to protein family HMM TIGR00464; glutamyl-tRNA synthetase 524864 gltX-1 3103869 gltX-1 Methylococcus capsulatus str. Bath glutamyl-tRNA synthetase YP_113029.1 523464 R 243233 CDS YP_113030.1 53805248 3102467 525098..526564 1 NC_002977.6 identified by similarity to SP:P50974; match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH ubiquinone/plastoquinone complex subunit 526564 3102467 MCA0511 Methylococcus capsulatus str. Bath NADH ubiquinone/plastoquinone complex subunit YP_113030.1 525098 D 243233 CDS YP_113031.1 53805247 3104705 526638..529859 1 NC_002977.6 identified by similarity to OMNI:NTL01AA00598; hypothetical protein 529859 3104705 MCA0512 Methylococcus capsulatus str. Bath hypothetical protein YP_113031.1 526638 D 243233 CDS YP_113032.1 53805246 3104704 529905..531434 1 NC_002977.6 identified by similarity to GP:17221967; match to protein family HMM PF00361; match to protein family HMM PF00662; NADH ubiquinone/plastoquinone complex subunit 531434 3104704 MCA0513 Methylococcus capsulatus str. Bath NADH ubiquinone/plastoquinone complex subunit YP_113032.1 529905 D 243233 CDS YP_113033.1 53805245 3102476 531445..532995 1 NC_002977.6 identified by similarity to SP:P31978; match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH ubiquinone/plastoquinone complex subunit 532995 3102476 MCA0514 Methylococcus capsulatus str. Bath NADH ubiquinone/plastoquinone complex subunit YP_113033.1 531445 D 243233 CDS YP_113034.1 53805244 3103817 533015..534550 1 NC_002977.6 identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH ubiquinone/plastoquinone complex subunit 534550 3103817 MCA0515 Methylococcus capsulatus str. Bath NADH ubiquinone/plastoquinone complex subunit YP_113034.1 533015 D 243233 CDS YP_113035.1 53805243 3103820 534781..535278 1 NC_002977.6 identified by similarity to SP:P23869; match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase B 535278 ppiB 3103820 ppiB Methylococcus capsulatus str. Bath peptidyl-prolyl cis-trans isomerase B YP_113035.1 534781 D 243233 CDS YP_113036.1 53805242 3104653 535433..535864 1 NC_002977.6 identified by similarity to SP:P18274; match to protein family HMM PF01258; DnaK suppressor protein 535864 dksA 3104653 dksA Methylococcus capsulatus str. Bath DnaK suppressor protein YP_113036.1 535433 D 243233 CDS YP_113037.1 53805241 3103792 535883..536791 1 NC_002977.6 identified by similarity to SP:P96551; match to protein family HMM PF00749; glutamyl-tRNA synthetase 536791 3103792 MCA0518 Methylococcus capsulatus str. Bath glutamyl-tRNA synthetase YP_113037.1 535883 D 243233 CDS YP_113038.1 53805240 3103242 complement(536810..537250) 1 NC_002977.6 identified by similarity to GP:1001228; match to protein family HMM PF00293; MutT/nudix family protein 537250 3103242 MCA0519 Methylococcus capsulatus str. Bath MutT/nudix family protein YP_113038.1 536810 R 243233 CDS YP_113039.1 53805239 3104722 537327..538037 1 NC_002977.6 hypothetical protein 538037 3104722 MCA0520 Methylococcus capsulatus str. Bath hypothetical protein YP_113039.1 537327 D 243233 CDS YP_113040.1 53805238 3103746 538037..538480 1 NC_002977.6 identified by similarity to OMNI:NTL01ST1808; match to protein family HMM PF05779; hypothetical protein 538480 3103746 MCA0521 Methylococcus capsulatus str. Bath hypothetical protein YP_113040.1 538037 D 243233 CDS YP_113041.1 53805237 3104339 538507..538968 1 NC_002977.6 hypothetical protein 538968 3104339 MCA0522 Methylococcus capsulatus str. Bath hypothetical protein YP_113041.1 538507 D 243233 CDS YP_113042.1 53805236 3104962 538995..539465 1 NC_002977.6 identified by similarity to SP:P45523; match to protein family HMM PF00254; FKBP-type peptidyl-prolyl cis-trans isomerase 539465 3104962 MCA0523 Methylococcus capsulatus str. Bath FKBP-type peptidyl-prolyl cis-trans isomerase YP_113042.1 538995 D 243233 CDS YP_113043.1 53805235 3104961 complement(539526..540011) 1 NC_002977.6 identified by similarity to GP:3659895; cytochrome P460 540011 3104961 MCA0524 Methylococcus capsulatus str. Bath cytochrome P460 YP_113043.1 539526 R 243233 CDS YP_113044.1 53805234 3103686 complement(540057..540458) 1 NC_002977.6 hypothetical protein 540458 3103686 MCA0525 Methylococcus capsulatus str. Bath hypothetical protein YP_113044.1 540057 R 243233 CDS YP_113045.1 53805227 3103392 complement(540474..541184) 1 NC_002977.6 identified by similarity to OMNI:NTL02SC1751; match to protein family HMM PF00596; hypothetical protein 541184 3103392 MCA0526 Methylococcus capsulatus str. Bath hypothetical protein YP_113045.1 540474 R 243233 CDS YP_113046.1 53805226 3103377 complement(541133..542104) 1 NC_002977.6 identified by match to protein family HMM PF02517; hypothetical protein 542104 3103377 MCA0527 Methylococcus capsulatus str. Bath hypothetical protein YP_113046.1 541133 R 243233 CDS YP_113047.1 53805233 3103583 542565..543680 1 NC_002977.6 identified by match to protein family HMM PF00254; match to protein family HMM PF05698; trigger factor 543680 tig 3103583 tig Methylococcus capsulatus str. Bath trigger factor YP_113047.1 542565 D 243233 CDS YP_113048.2 77128443 3103556 543746..544333 1 NC_002977.6 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 544333 clpP 3103556 clpP Methylococcus capsulatus str. Bath ATP-dependent Clp protease proteolytic subunit YP_113048.2 543746 D 243233 CDS YP_113049.1 53805231 3103528 544429..545715 1 NC_002977.6 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 545715 clpX 3103528 clpX Methylococcus capsulatus str. Bath ATP-dependent protease ATP-binding subunit ClpX YP_113049.1 544429 D 243233 CDS YP_113050.1 53805230 3103750 545845..548274 1 NC_002977.6 identified by similarity to SP:P08177; match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763; ATP-dependent protease La 548274 lon 3103750 lon Methylococcus capsulatus str. Bath ATP-dependent protease La YP_113050.1 545845 D 243233 CDS YP_113051.1 53805229 3103464 548430..548702 1 NC_002977.6 identified by similarity to SP:P02341; match to protein family HMM PF00216; DNA-binding protein HU-beta 548702 hupB 3103464 hupB Methylococcus capsulatus str. Bath DNA-binding protein HU-beta YP_113051.1 548430 D 243233 CDS YP_113052.1 53805225 3103590 549020..550837 1 NC_002977.6 identified by similarity to SP:P77241; match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerse D 550837 ppiD 3103590 ppiD Methylococcus capsulatus str. Bath peptidyl-prolyl cis-trans isomerse D YP_113052.1 549020 D 243233 CDS YP_113053.1 53805224 3103353 550891..552033 1 NC_002977.6 hypothetical protein 552033 3103353 MCA0534 Methylococcus capsulatus str. Bath hypothetical protein YP_113053.1 550891 D 243233 CDS YP_113054.1 53805223 3103340 complement(552042..552539) 1 NC_002977.6 hypothetical protein 552539 3103340 MCA0535 Methylococcus capsulatus str. Bath hypothetical protein YP_113054.1 552042 R 243233 CDS YP_113055.1 53805222 3103334 552555..552887 1 NC_002977.6 hypothetical protein 552887 3103334 MCA0536 Methylococcus capsulatus str. Bath hypothetical protein YP_113055.1 552555 D 243233 CDS YP_113056.1 53805221 3103330 complement(552891..553790) 1 NC_002977.6 identified by match to protein family HMM PF03193; match to protein family HMM TIGR00157; hypothetical protein 553790 3103330 MCA0537 Methylococcus capsulatus str. Bath hypothetical protein YP_113056.1 552891 R 243233 CDS YP_113057.1 53805220 3103325 complement(553808..555169) 1 NC_002977.6 identified by match to protein family HMM PF01435; M48 family peptidase 555169 3103325 MCA0538 Methylococcus capsulatus str. Bath M48 family peptidase YP_113057.1 553808 R 243233 CDS YP_113058.1 53805219 3103318 555152..555697 1 NC_002977.6 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 555697 orn 3103318 orn Methylococcus capsulatus str. Bath oligoribonuclease YP_113058.1 555152 D 243233 CDS YP_113059.1 53805218 3103317 555703..556644 1 NC_002977.6 identified by similarity to OMNI:CC1055; hypothetical protein 556644 3103317 MCA0540 Methylococcus capsulatus str. Bath hypothetical protein YP_113059.1 555703 D 243233 CDS YP_113060.1 53805217 3102735 complement(556567..557613) 1 NC_002977.6 identified by match to protein family HMM PF00534; glycosyl transferase family protein 557613 3102735 MCA0541 Methylococcus capsulatus str. Bath glycosyl transferase family protein YP_113060.1 556567 R 243233 CDS YP_113061.1 53805216 3103300 complement(557693..559513) 1 NC_002977.6 identified by similarity to SP:P54420; match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; asparagine synthetase 559513 3103300 MCA0542 Methylococcus capsulatus str. Bath asparagine synthetase YP_113061.1 557693 R 243233 CDS YP_113062.1 53805215 3103295 559512..560024 1 NC_002977.6 hypothetical protein 560024 3103295 MCA0543 Methylococcus capsulatus str. Bath hypothetical protein YP_113062.1 559512 D 243233 CDS YP_113063.1 53805214 3104601 complement(560144..562228) 1 NC_002977.6 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 562228 fusA-1 3104601 fusA-1 Methylococcus capsulatus str. Bath elongation factor G YP_113063.1 560144 R 243233 CDS YP_113064.1 53805213 3103281 complement(562384..563520) 1 NC_002977.6 identified by similarity to SP:P31801; match to protein family HMM PF01699; calcium/proton transporter 563520 3103281 MCA0545 Methylococcus capsulatus str. Bath calcium/proton transporter YP_113064.1 562384 R 243233 CDS YP_113065.1 53805212 3103276 563632..564648 1 NC_002977.6 hypothetical protein 564648 3103276 MCA0546 Methylococcus capsulatus str. Bath hypothetical protein YP_113065.1 563632 D 243233 CDS YP_113066.1 53805211 3102783 564816..568460 1 NC_002977.6 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein 568460 3102783 MCA0547 Methylococcus capsulatus str. Bath sensory box protein YP_113066.1 564816 D 243233 CDS YP_113067.1 53805209 3102811 complement(568423..569019) 1 NC_002977.6 identified by similarity to GP:9950157; match to protein family HMM PF00849; match to protein family HMM TIGR00093; RNA pseudouridine synthase 569019 3102811 MCA0548 Methylococcus capsulatus str. Bath RNA pseudouridine synthase YP_113067.1 568423 R 243233 CDS YP_113068.1 53805210 3103250 569026..569874 1 NC_002977.6 identified by similarity to SP:P33635; match to protein family HMM PF00588; RNA methyltransferase 569874 3103250 MCA0549 Methylococcus capsulatus str. Bath RNA methyltransferase YP_113068.1 569026 D 243233 CDS YP_113069.1 53805208 3102810 570770..574348 1 NC_002977.6 identified by match to protein family HMM PF01555; match to protein family HMM PF04480; DNA methyltransferase 574348 3102810 MCA0550 Methylococcus capsulatus str. Bath DNA methyltransferase YP_113069.1 570770 D 243233 CDS YP_113070.1 53805207 3104664 574465..577134 1 NC_002977.6 identified by similarity to OMNI:NTL01TV1471; match to protein family HMM PF04851; hypothetical protein 577134 3104664 MCA0551 Methylococcus capsulatus str. Bath hypothetical protein YP_113070.1 574465 D 243233 CDS YP_113071.1 53805206 3103417 complement(577187..579481) 1 NC_002977.6 hypothetical protein 579481 3103417 MCA0552 Methylococcus capsulatus str. Bath hypothetical protein YP_113071.1 577187 R 243233 CDS YP_113072.1 53805205 3103098 579565..582750 1 NC_002977.6 identified by similarity to GP:9107638; match to protein family HMM PF00754; discoidin domain-containing protein 582750 3103098 MCA0553 Methylococcus capsulatus str. Bath discoidin domain-containing protein YP_113072.1 579565 D 243233 CDS YP_113073.1 53805204 3103095 582796..583761 1 NC_002977.6 identified by similarity to OMNI:NTL03PA05233; match to protein family HMM PF00529; HlyD family secretion protein 583761 3103095 MCA0554 Methylococcus capsulatus str. Bath HlyD family secretion protein YP_113073.1 582796 D 243233 CDS YP_113074.1 53805203 3103075 583758..586481 1 NC_002977.6 identified by similarity to OMNI:NTL03PA05232; match to protein family HMM PF00005; match to protein family HMM PF01061; ABC transporter ATP-binding protein/permease 586481 3103075 MCA0555 Methylococcus capsulatus str. Bath ABC transporter ATP-binding protein/permease YP_113074.1 583758 D 243233 CDS YP_113075.1 53805202 3104686 complement(586447..586905) 1 NC_002977.6 hypothetical protein 586905 3104686 MCA0556 Methylococcus capsulatus str. Bath hypothetical protein YP_113075.1 586447 R 243233 CDS YP_113076.1 53805201 3103044 586959..588098 1 NC_002977.6 identified by similarity to SP:P31993; match to protein family HMM PF01061; hypothetical protein 588098 3103044 MCA0557 Methylococcus capsulatus str. Bath hypothetical protein YP_113076.1 586959 D 243233 CDS YP_113077.1 53805200 3104307 588136..588552 1 NC_002977.6 identified by similarity to OMNI:NTL01AT2375; hypothetical protein 588552 3104307 MCA0558 Methylococcus capsulatus str. Bath hypothetical protein YP_113077.1 588136 D 243233 CDS YP_113078.1 53805199 3104306 589375..589794 1 NC_002977.6 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein 589794 3104306 MCA0559 Methylococcus capsulatus str. Bath hypothetical protein YP_113078.1 589375 D 243233 CDS YP_113079.1 53805198 3103011 589821..590273 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04715; match to protein family HMM PF04214; hypothetical protein 590273 3103011 MCA0560 Methylococcus capsulatus str. Bath hypothetical protein YP_113079.1 589821 D 243233 CDS YP_113080.1 53805197 3102998 590296..591288 1 NC_002977.6 identified by similarity to SP:P46880; match to protein family HMM PF00480; match to protein family HMM PF02685; match to protein family HMM TIGR00749; glucokinase 591288 glk 3102998 glk Methylococcus capsulatus str. Bath glucokinase YP_113080.1 590296 D 243233 CDS YP_113081.1 53805196 3103961 591414..591845 1 NC_002977.6 identified by similarity to OMNI:NTL01SMB01173; hypothetical protein 591845 3103961 MCA0562 Methylococcus capsulatus str. Bath hypothetical protein YP_113081.1 591414 D 243233 CDS YP_113082.1 53805195 3102986 591842..592942 1 NC_002977.6 identified by similarity to SP:P17556; match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518; alanine dehydrogenase 592942 ald 3102986 ald Methylococcus capsulatus str. Bath alanine dehydrogenase YP_113082.1 591842 D 243233 CDS YP_113083.1 53805194 3102976 complement(592951..593268) 1 NC_002977.6 hypothetical protein 593268 3102976 MCA0564 Methylococcus capsulatus str. Bath hypothetical protein YP_113083.1 592951 R 243233 CDS YP_113084.1 53805193 3103204 complement(593310..595943) 1 NC_002977.6 identified by similarity to SP:P36223; match to protein family HMM PF01842; match to protein family HMM PF01909; match to protein family HMM PF01966; match to protein family HMM TIGR01693; protein-P-II uridylyltransferase 595943 glnD 3103204 glnD Methylococcus capsulatus str. Bath protein-P-II uridylyltransferase YP_113084.1 593310 R 243233 CDS YP_113085.1 53805192 3102940 complement(595921..596706) 1 NC_002977.6 identified by similarity to SP:P07906; match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase 596706 map 3102940 map Methylococcus capsulatus str. Bath methionine aminopeptidase YP_113085.1 595921 R 243233 CDS YP_113086.1 53805191 3102474 596940..597710 1 NC_002977.6 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 597710 rpsB 3102474 rpsB Methylococcus capsulatus str. Bath 30S ribosomal protein S2 YP_113086.1 596940 D 243233 CDS YP_113087.1 53805190 3102938 597803..598684 1 NC_002977.6 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 598684 tsf 3102938 tsf Methylococcus capsulatus str. Bath elongation factor Ts YP_113087.1 597803 D 243233 CDS YP_113088.1 53805189 3104672 598774..599493 1 NC_002977.6 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 599493 pyrH 3104672 pyrH Methylococcus capsulatus str. Bath uridylate kinase YP_113088.1 598774 D 243233 CDS YP_113089.1 53805188 3102468 599501..600058 1 NC_002977.6 identified by similarity to SP:P16174; match to protein family HMM PF01765; match to protein family HMM TIGR00496; ribosome recycling factor 600058 frr 3102468 frr Methylococcus capsulatus str. Bath ribosome recycling factor YP_113089.1 599501 D 243233 CDS YP_113090.1 53805187 3102469 600072..600860 1 NC_002977.6 identified by similarity to SP:Q47675; match to protein family HMM PF01255; match to protein family HMM TIGR00055; undecaprenyl diphosphate synthase 600860 uppS 3102469 uppS Methylococcus capsulatus str. Bath undecaprenyl diphosphate synthase YP_113090.1 600072 D 243233 CDS YP_113091.1 53805186 3102906 600906..601892 1 NC_002977.6 identified by similarity to SP:P06466; match to protein family HMM PF01148; phosphatidate cytidylyltransferase 601892 cdsA 3102906 cdsA Methylococcus capsulatus str. Bath phosphatidate cytidylyltransferase YP_113091.1 600906 D 243233 CDS YP_113092.1 53805185 3104583 601925..603109 1 NC_002977.6 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 603109 dxr 3104583 dxr Methylococcus capsulatus str. Bath 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_113092.1 601925 D 243233 CDS YP_113093.1 53805177 3103499 603214..604467 1 NC_002977.6 identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054; membrane-associated zinc metalloprotease 604467 3103499 MCA0574 Methylococcus capsulatus str. Bath membrane-associated zinc metalloprotease YP_113093.1 603214 D 243233 CDS YP_113094.1 53805176 3102167 604619..605251 1 NC_002977.6 identified by similarity to SP:P21892; thiol:disulfide interchange protein DsbC 605251 dsbC 3102167 dsbC Methylococcus capsulatus str. Bath thiol:disulfide interchange protein DsbC YP_113094.1 604619 D 243233 CDS YP_113095.1 53805175 3102732 complement(605298..607862) 1 NC_002977.6 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 607862 mutS 3102732 mutS Methylococcus capsulatus str. Bath DNA mismatch repair protein MutS YP_113095.1 605298 R 243233 CDS YP_113096.1 53805174 3103148 607997..608374 1 NC_002977.6 identified by similarity to OMNI:MT3577; match to protein family HMM PF00190; hypothetical protein 608374 3103148 MCA0577 Methylococcus capsulatus str. Bath hypothetical protein YP_113096.1 607997 D 243233 CDS YP_113097.1 53805173 3102441 complement(609385..609819) 1 NC_002977.6 identified by similarity to OMNI:NTL01SS01176; match to protein family HMM PF01724; hypothetical protein 609819 3102441 MCA0580 Methylococcus capsulatus str. Bath hypothetical protein YP_113097.1 609385 R 243233 CDS YP_113098.1 53805172 3102626 complement(609816..610124) 1 NC_002977.6 site-specific recombinase phage integrase 610124 3102626 MCA0581 Methylococcus capsulatus str. Bath site-specific recombinase phage integrase YP_113098.1 609816 R 243233 CDS YP_113099.1 53805171 3103691 610687..611139 1 NC_002977.6 identified by match to protein family HMM PF00571; hypothetical protein 611139 3103691 MCA0583 Methylococcus capsulatus str. Bath hypothetical protein YP_113099.1 610687 D 243233 CDS YP_113100.1 53805170 3102325 611168..611728 1 NC_002977.6 identified by similarity to SP:P09168; match to protein family HMM PF01035; match to protein family HMM TIGR00589; methylated-DNA--protein-cysteine methyltransferase 611728 ogt 3102325 ogt Methylococcus capsulatus str. Bath methylated-DNA--protein-cysteine methyltransferase YP_113100.1 611168 D 243233 CDS YP_113101.1 53805169 3103101 612033..613547 1 NC_002977.6 identified by similarity to GP:17428765; match to protein family HMM PF02696; hypothetical protein 613547 3103101 MCA0585 Methylococcus capsulatus str. Bath hypothetical protein YP_113101.1 612033 D 243233 CDS YP_113102.1 53805168 3102484 613633..613947 1 NC_002977.6 identified by similarity to GP:1754625; match to protein family HMM PF00355; Rieske 2Fe-2S family protein 613947 3102484 MCA0586 Methylococcus capsulatus str. Bath Rieske 2Fe-2S family protein YP_113102.1 613633 D 243233 CDS YP_113103.1 53805122 3105040 complement(614137..615693) 1 NC_002977.6 hypothetical protein 615693 3105040 MCA0587 Methylococcus capsulatus str. Bath hypothetical protein YP_113103.1 614137 R 243233 CDS YP_113104.1 53805121 3103386 complement(616500..617075) 1 NC_002977.6 identified by similarity to GP:619066; match to protein family HMM PF00072; match to protein family HMM PF03861; response regulator NasT 617075 nasT 3103386 nasT Methylococcus capsulatus str. Bath response regulator NasT YP_113104.1 616500 R 243233 CDS YP_113105.1 53805120 3102183 complement(617072..618370) 1 NC_002977.6 identified by similarity to SP:P38043; nitrate transporter 618370 3102183 MCA0589 Methylococcus capsulatus str. Bath nitrate transporter YP_113105.1 617072 R 243233 CDS YP_113106.1 53805119 3102182 complement(618410..621049) 1 NC_002977.6 identified by similarity to SP:Q06457; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04324; match to protein family HMM PF04879; nitrate reductase 621049 nasA 3102182 nasA Methylococcus capsulatus str. Bath nitrate reductase YP_113106.1 618410 R 243233 CDS YP_113107.1 53805118 3104943 complement(621051..621407) 1 NC_002977.6 identified by similarity to SP:P42436; match to protein family HMM PF00355; nitrite reductase [NAD(P)H], small subunit 621407 nirD 3104943 nirD Methylococcus capsulatus str. Bath nitrite reductase [NAD(P)H], small subunit YP_113107.1 621051 R 243233 CDS YP_113108.1 53805117 3103163 complement(621391..623853) 1 NC_002977.6 identified by similarity to SP:P42435; match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; nitrite reductase [NAD(P)H], large subunit 623853 nirB 3103163 nirB Methylococcus capsulatus str. Bath nitrite reductase [NAD(P)H], large subunit YP_113108.1 621391 R 243233 CDS YP_113109.1 53805102 3104747 complement(623850..625637) 1 NC_002977.6 identified by similarity to GP:4557191; match to protein family HMM PF00069; match to protein family HMM PF00481; protein phosphatase/kinase 625637 3104747 MCA0593 Methylococcus capsulatus str. Bath protein phosphatase/kinase YP_113109.1 623850 R 243233 CDS YP_113110.1 53805101 3104750 complement(625663..626937) 1 NC_002977.6 identified by similarity to SP:P46907; match to protein family HMM PF07690; nitrate transporter 626937 3104750 MCA0594 Methylococcus capsulatus str. Bath nitrate transporter YP_113110.1 625663 R 243233 CDS YP_113111.1 53805100 3104749 627295..627783 1 NC_002977.6 hypothetical protein 627783 3104749 MCA0595 Methylococcus capsulatus str. Bath hypothetical protein YP_113111.1 627295 D 243233 CDS YP_113112.1 53805099 3104659 complement(627857..628999) 1 NC_002977.6 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 628999 thrC 3104659 thrC Methylococcus capsulatus str. Bath threonine synthase YP_113112.1 627857 R 243233 CDS YP_113113.1 53805098 3104735 complement(629070..630380) 1 NC_002977.6 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 630380 hom 3104735 hom Methylococcus capsulatus str. Bath homoserine dehydrogenase YP_113113.1 629070 R 243233 CDS YP_113114.2 161579536 3104734 complement(630415..631599) 1 NC_002977.6 identified by similarity to SP:P77434; match to protein family HMM PF00155; aminotransferase 631599 3104734 MCA0598 Methylococcus capsulatus str. Bath aminotransferase YP_113114.2 630415 R 243233 CDS YP_113115.1 53805096 3104682 complement(631703..632401) 1 NC_002977.6 identified by similarity to GP:4545244; match to protein family HMM PF00483; nucleotidyltransferase 632401 3104682 MCA0599 Methylococcus capsulatus str. Bath nucleotidyltransferase YP_113115.1 631703 R 243233 CDS YP_113116.1 53805095 3102982 complement(632398..633423) 1 NC_002977.6 identified by similarity to GP:4545243; hypothetical protein 633423 3102982 MCA0600 Methylococcus capsulatus str. Bath hypothetical protein YP_113116.1 632398 R 243233 CDS YP_113117.1 53805076 3104216 633482..636757 1 NC_002977.6 identified by similarity to OMNI:PSPTO0554; match to protein family HMM PF04453; organic solvent tolerance protein 636757 3104216 MCA0601 Methylococcus capsulatus str. Bath organic solvent tolerance protein YP_113117.1 633482 D 243233 CDS YP_113118.1 53805075 3102703 636744..638108 1 NC_002977.6 identified by similarity to SP:P21202; match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase SurA 638108 surA 3102703 surA Methylococcus capsulatus str. Bath peptidyl-prolyl cis-trans isomerase SurA YP_113118.1 636744 D 243233 CDS YP_113119.1 53805074 3103080 638122..639114 1 NC_002977.6 identified by similarity to SP:P19624; match to protein family HMM PF04166; match to protein family HMM TIGR00557; pyridoxal phosphate biosynthetic protein PdxA 639114 pdxA 3103080 pdxA Methylococcus capsulatus str. Bath pyridoxal phosphate biosynthetic protein PdxA YP_113119.1 638122 D 243233 CDS YP_113120.1 53805073 3103079 639111..639884 1 NC_002977.6 identified by match to protein family HMM PF00398; match to protein family HMM TIGR00755; dimethyladenosine transferase 639884 ksgA 3103079 ksgA Methylococcus capsulatus str. Bath dimethyladenosine transferase YP_113120.1 639111 D 243233 CDS YP_113121.1 53805072 3104081 complement(639987..640307) 1 NC_002977.6 identified by similarity to SP:P02937; lipoprotein 640307 3104081 MCA0605 Methylococcus capsulatus str. Bath lipoprotein YP_113121.1 639987 R 243233 CDS YP_113122.1 53805071 3104071 complement(640405..640938) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA03756; match to protein family HMM PF03734; hypothetical protein 640938 3104071 MCA0606 Methylococcus capsulatus str. Bath hypothetical protein YP_113122.1 640405 R 243233 CDS YP_113123.1 53805070 3104070 641107..642741 1 NC_002977.6 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 642741 pgm 3104070 pgm Methylococcus capsulatus str. Bath phosphoglucomutase YP_113123.1 641107 D 243233 CDS YP_113124.1 53805064 3103798 complement(642970..643443) 1 NC_002977.6 identified by similarity to OMNI:NTL01SS02055; hypothetical protein 643443 3103798 MCA0608 Methylococcus capsulatus str. Bath hypothetical protein YP_113124.1 642970 R 243233 CDS YP_113125.1 53805063 3103780 643518..645416 1 NC_002977.6 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 645416 3103780 MCA0609 Methylococcus capsulatus str. Bath ABC transporter ATP-binding protein YP_113125.1 643518 D 243233 CDS YP_113126.1 53805062 3103776 complement(645424..646401) 1 NC_002977.6 catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 646401 mdh 3103776 mdh Methylococcus capsulatus str. Bath malate dehydrogenase YP_113126.1 645424 R 243233 CDS YP_113127.1 53805061 3103775 complement(646613..646819) 1 NC_002977.6 identified by similarity to GP:2935549; match to protein family HMM PF00403; mercuric ion binding protein 646819 3103775 MCA0611 Methylococcus capsulatus str. Bath mercuric ion binding protein YP_113127.1 646613 R 243233 CDS YP_113128.1 53805060 3103748 complement(646874..647848) 1 NC_002977.6 identified by similarity to SP:Q56623; UDP-glucose 4-epimerase 647848 galE-1 3103748 galE-1 Methylococcus capsulatus str. Bath UDP-glucose 4-epimerase YP_113128.1 646874 R 243233 CDS YP_113129.1 53805059 3103738 complement(647845..648870) 1 NC_002977.6 identified by similarity to GP:6690125; match to protein family HMM PF00534; glycosyl transferase family protein 648870 3103738 MCA0613 Methylococcus capsulatus str. Bath glycosyl transferase family protein YP_113129.1 647845 R 243233 CDS YP_113130.1 53805058 3103737 648919..649116 1 NC_002977.6 hypothetical protein 649116 3103737 MCA0614 Methylococcus capsulatus str. Bath hypothetical protein YP_113130.1 648919 D 243233 CDS YP_113131.1 53805057 3103021 649225..650781 1 NC_002977.6 identified by similarity to GP:1245347; match to protein family HMM PF03062; alginate O-acetyltransferase 650781 3103021 MCA0615 Methylococcus capsulatus str. Bath alginate O-acetyltransferase YP_113131.1 649225 D 243233 CDS YP_113132.1 53805049 3102605 651064..651834 1 NC_002977.6 hypothetical protein 651834 3102605 MCA0616 Methylococcus capsulatus str. Bath hypothetical protein YP_113132.1 651064 D 243233 CDS YP_113133.1 53805048 3102604 complement(652481..652747) 1 NC_002977.6 hypothetical protein 652747 3102604 MCA0617 Methylococcus capsulatus str. Bath hypothetical protein YP_113133.1 652481 R 243233 CDS YP_113134.1 53805047 3103709 complement(652744..653844) 1 NC_002977.6 identified by match to protein family HMM PF00534; glycosyl transferase family protein 653844 3103709 MCA0618 Methylococcus capsulatus str. Bath glycosyl transferase family protein YP_113134.1 652744 R 243233 CDS YP_113135.1 53805046 3102865 complement(653841..654776) 1 NC_002977.6 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 654776 3102865 MCA0619 Methylococcus capsulatus str. Bath glycosyl transferase group 2 family protein YP_113135.1 653841 R 243233 CDS YP_113136.1 53805045 3102864 complement(654800..656632) 1 NC_002977.6 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 656632 3102864 MCA0620 Methylococcus capsulatus str. Bath glycosyl transferase group 2 family protein YP_113136.1 654800 R 243233 CDS YP_113137.1 53805044 3103478 complement(656659..657762) 1 NC_002977.6 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 657762 3103478 MCA0621 Methylococcus capsulatus str. Bath glycosyl transferase group 2 family protein YP_113137.1 656659 R 243233 CDS YP_113138.1 53805043 3103468 complement(657817..658842) 1 NC_002977.6 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 658842 3103468 MCA0622 Methylococcus capsulatus str. Bath glycosyl transferase group 2 family protein YP_113138.1 657817 R 243233 CDS YP_113139.1 53805033 3104984 complement(658901..659695) 1 NC_002977.6 identified by similarity to GP:11641086; hypothetical protein 659695 3104984 MCA0623 Methylococcus capsulatus str. Bath hypothetical protein YP_113139.1 658901 R 243233 CDS YP_113140.1 53805032 3103014 complement(659738..661009) 1 NC_002977.6 identified by similarity to GP:1890598; hypothetical protein 661009 3103014 MCA0624 Methylococcus capsulatus str. Bath hypothetical protein YP_113140.1 659738 R 243233 CDS YP_113141.1 53805031 3102364 complement(661019..662272) 1 NC_002977.6 identified by similarity to GP:15025336; match to protein family HMM PF00005; carbohydrate ABC transporter ATP-binding protein 662272 3102364 MCA0625 Methylococcus capsulatus str. Bath carbohydrate ABC transporter ATP-binding protein YP_113141.1 661019 R 243233 CDS YP_113142.1 53805030 3102363 complement(662275..663102) 1 NC_002977.6 identified by similarity to OMNI:NTL01SS00318; match to protein family HMM PF01061; carbohydrate ABC-transporter permease 663102 3102363 MCA0626 Methylococcus capsulatus str. Bath carbohydrate ABC-transporter permease YP_113142.1 662275 R 243233 CDS YP_113143.1 53805029 3102972 664810..666609 1 NC_002977.6 identified by similarity to SP:P21893; match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 666609 recJ 3102972 recJ Methylococcus capsulatus str. Bath single-stranded-DNA-specific exonuclease RecJ YP_113143.1 664810 D 243233 CDS YP_113144.1 53805028 3104242 complement(666613..667485) 1 NC_002977.6 identified by similarity to SP:P55882; phosphomethylpyrimidine kinase 667485 3104242 MCA0629 Methylococcus capsulatus str. Bath phosphomethylpyrimidine kinase YP_113144.1 666613 R 243233 CDS YP_113145.1 53805027 3104241 667623..668132 1 NC_002977.6 hypothetical protein 668132 3104241 MCA0630 Methylococcus capsulatus str. Bath hypothetical protein YP_113145.1 667623 D 243233 CDS YP_113146.1 53805021 3103703 668226..668840 1 NC_002977.6 identified by match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein 668840 3103703 MCA0631 Methylococcus capsulatus str. Bath MotA/TolQ/ExbB proton channel family protein YP_113146.1 668226 D 243233 CDS YP_113147.1 53805020 3102794 668848..669273 1 NC_002977.6 identified by match to protein family HMM PF02472; biopolymer ExbD/TolR family transporter 669273 3102794 MCA0632 Methylococcus capsulatus str. Bath biopolymer ExbD/TolR family transporter YP_113147.1 668848 D 243233 CDS YP_113148.1 53805019 3102793 669270..670280 1 NC_002977.6 identified by similarity to SP:P27300; match to protein family HMM PF02606; match to protein family HMM TIGR00682; tetraacyldisaccharide 4'-kinase 670280 lpxK 3102793 lpxK Methylococcus capsulatus str. Bath tetraacyldisaccharide 4'-kinase YP_113148.1 669270 D 243233 CDS YP_113149.1 53805018 3103430 670261..670473 1 NC_002977.6 identified by similarity to OMNI:VC1876; match to protein family HMM PF03966; hypothetical protein 670473 3103430 MCA0634 Methylococcus capsulatus str. Bath hypothetical protein YP_113149.1 670261 D 243233 CDS YP_113150.1 53805017 3102776 670473..671246 1 NC_002977.6 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 671246 kdsB 3102776 kdsB Methylococcus capsulatus str. Bath 3-deoxy-manno-octulosonate cytidylyltransferase YP_113150.1 670473 D 243233 CDS YP_113151.1 53805016 3102775 671252..671680 1 NC_002977.6 identified by similarity to SP:P76631; hypothetical protein 671680 3102775 MCA0636 Methylococcus capsulatus str. Bath hypothetical protein YP_113151.1 671252 D 243233 CDS YP_113152.1 53805015 3102507 complement(671682..672560) 1 NC_002977.6 identified by similarity to OMNI:NTL01SM02683; hypothetical protein 672560 3102507 MCA0637 Methylococcus capsulatus str. Bath hypothetical protein YP_113152.1 671682 R 243233 CDS YP_113153.1 53805006 3102506 672721..673398 1 NC_002977.6 identified by similarity to OMNI:NTL01XF00566; match to protein family HMM PF04366; hypothetical protein 673398 3102506 MCA0638 Methylococcus capsulatus str. Bath hypothetical protein YP_113153.1 672721 D 243233 CDS YP_113154.1 53805005 3102412 673420..674538 1 NC_002977.6 identified by match to protein family HMM PF00724; Oye family NADH-dependent flavin oxidoreductase 674538 3102412 MCA0639 Methylococcus capsulatus str. Bath Oye family NADH-dependent flavin oxidoreductase YP_113154.1 673420 D 243233 CDS YP_113155.1 53805004 3102411 complement(674681..674788) 1 NC_002977.6 identified by similarity to OMNI:NTL01HP01126; hypothetical protein 674788 3102411 MCA0640 Methylococcus capsulatus str. Bath hypothetical protein YP_113155.1 674681 R 243233 CDS YP_113156.1 53805003 3102492 674950..675120 1 NC_002977.6 identified by similarity to OMNI:NTL02YP0740; site-specific recombinase phage integrase 675120 3102492 MCA0641 Methylococcus capsulatus str. Bath site-specific recombinase phage integrase YP_113156.1 674950 D 243233 CDS YP_113157.1 53805002 3102550 676483..676791 1 NC_002977.6 hypothetical protein 676791 3102550 MCA0644 Methylococcus capsulatus str. Bath hypothetical protein YP_113157.1 676483 D 243233 CDS YP_113158.1 53805001 3102549 676937..677161 1 NC_002977.6 hypothetical protein 677161 3102549 MCA0645 Methylococcus capsulatus str. Bath hypothetical protein YP_113158.1 676937 D 243233 CDS YP_113159.1 53805000 3102414 complement(677255..677404) 1 NC_002977.6 hypothetical protein 677404 3102414 MCA0646 Methylococcus capsulatus str. Bath hypothetical protein YP_113159.1 677255 R 243233 CDS YP_113160.1 53804999 3104904 677584..678327 1 NC_002977.6 ion transport family protein 678327 3104904 MCA0647 Methylococcus capsulatus str. Bath ion transport family protein YP_113160.1 677584 D 243233 CDS YP_113161.1 53804991 3102174 complement(678324..678692) 1 NC_002977.6 hypothetical protein 678692 3102174 MCA0648 Methylococcus capsulatus str. Bath hypothetical protein YP_113161.1 678324 R 243233 CDS YP_113162.1 53804990 3103007 678684..678902 1 NC_002977.6 hypothetical protein 678902 3103007 MCA0649 Methylococcus capsulatus str. Bath hypothetical protein YP_113162.1 678684 D 243233 CDS YP_113163.1 53804989 3102490 complement(684633..684923) 1 NC_002977.6 identified by similarity to GP:18893192; match to protein family HMM PF02647; match to protein family HMM TIGR01573; CRISPR-associated Cas2 family protein 684923 cas2 3102490 cas2 Methylococcus capsulatus str. Bath CRISPR-associated Cas2 family protein YP_113163.1 684633 R 243233 CDS YP_113164.1 53804988 3102489 complement(685018..686052) 1 NC_002977.6 identified by match to protein family HMM PF01867; match to protein family HMM TIGR00287; CRISPR-associated Cas1 family protein 686052 cas1 3102489 cas1 Methylococcus capsulatus str. Bath CRISPR-associated Cas1 family protein YP_113164.1 685018 R 243233 CDS YP_113165.1 53804987 3102078 complement(686049..686681) 1 NC_002977.6 identified by similarity to OMNI:NTL01SPL1235; match to protein family HMM TIGR00372; CRISPR-associated Cas4 family protein 686681 cas4 3102078 cas4 Methylococcus capsulatus str. Bath CRISPR-associated Cas4 family protein YP_113165.1 686049 R 243233 CDS YP_113166.1 53804986 3104681 complement(686692..686928) 1 NC_002977.6 identified by similarity to SP:Q9X137; hypothetical protein 686928 3104681 MCA0653 Methylococcus capsulatus str. Bath hypothetical protein YP_113166.1 686692 R 243233 CDS YP_113167.1 53804985 3104680 complement(686941..687870) 1 NC_002977.6 identified by similarity to OMNI:NTL01SPL1236; match to protein family HMM PF05107; match to protein family HMM TIGR01595; CRISPR-associated Csh2 family protein 687870 3104680 MCA0654 Methylococcus capsulatus str. Bath CRISPR-associated Csh2 family protein YP_113167.1 686941 R 243233 CDS YP_113168.1 53804984 3104352 complement(687929..689632) 1 NC_002977.6 identified by match to protein family HMM TIGR01863; CRISPR-associated Csd1 family protein 689632 3104352 MCA0655 Methylococcus capsulatus str. Bath CRISPR-associated Csd1 family protein YP_113168.1 687929 R 243233 CDS YP_113169.1 53804975 3102496 complement(689629..690297) 1 NC_002977.6 identified by match to protein family HMM TIGR01876; CRISPR-associated Csd1 family protein 690297 3102496 MCA0656 Methylococcus capsulatus str. Bath CRISPR-associated Csd1 family protein YP_113169.1 689629 R 243233 CDS YP_113170.1 53804974 3104329 complement(690350..692548) 1 NC_002977.6 identified by similarity to OMNI:NTL01BH0337; match to protein family HMM PF00270; match to protein family HMM TIGR01587; CRISPR-associated helicase Cas3 692548 3104329 MCA0657 Methylococcus capsulatus str. Bath CRISPR-associated helicase Cas3 YP_113170.1 690350 R 243233 CDS YP_113171.1 53804973 3104328 692541..692882 1 NC_002977.6 hypothetical protein 692882 3104328 MCA0658 Methylococcus capsulatus str. Bath hypothetical protein YP_113171.1 692541 D 243233 CDS YP_113172.1 53804972 3102157 complement(692867..693142) 1 NC_002977.6 identified by similarity to GP:17135534; match to protein family HMM PF05899; hypothetical protein 693142 3102157 MCA0659 Methylococcus capsulatus str. Bath hypothetical protein YP_113172.1 692867 R 243233 CDS YP_113173.1 53804971 3104127 complement(693215..693919) 1 NC_002977.6 identified by match to protein family HMM PF00753; metallo-beta-lactamase 693919 3104127 MCA0660 Methylococcus capsulatus str. Bath metallo-beta-lactamase YP_113173.1 693215 R 243233 CDS YP_113174.1 53804970 3104126 complement(694018..694866) 1 NC_002977.6 identified by similarity to SP:P75959; match to protein family HMM PF00480; ROK family protein 694866 3104126 MCA0661 Methylococcus capsulatus str. Bath ROK family protein YP_113174.1 694018 R 243233 CDS YP_113175.1 53804969 3104799 695081..696169 1 NC_002977.6 identified by similarity to SP:P77406; match to protein family HMM PF01594; permease 696169 3104799 MCA0662 Methylococcus capsulatus str. Bath permease YP_113175.1 695081 D 243233 CDS YP_113176.1 53804968 3102745 complement(696179..697588) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA03919; match to protein family HMM PF02562; PhoH family protein 697588 3102745 MCA0663 Methylococcus capsulatus str. Bath PhoH family protein YP_113176.1 696179 R 243233 CDS YP_113177.1 53804967 3102744 complement(697616..698101) 1 NC_002977.6 identified by similarity to GP:17428331; match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein 698101 3102744 MCA0664 Methylococcus capsulatus str. Bath anti-oxidant AhpCTSA family protein YP_113177.1 697616 R 243233 CDS YP_113178.1 53805167 3102483 complement(698127..698654) 1 NC_002977.6 identified by similarity to SP:P23483; glycine cleavage system transcriptional repressor 698654 3102483 MCA0665 Methylococcus capsulatus str. Bath glycine cleavage system transcriptional repressor YP_113178.1 698127 R 243233 CDS YP_113179.1 53805166 3102456 complement(698719..699540) 1 NC_002977.6 identified by similarity to SP:P31054; match to protein family HMM PF02673; match to protein family HMM TIGR00753; undecaprenol kinase 699540 3102456 MCA0666 Methylococcus capsulatus str. Bath undecaprenol kinase YP_113179.1 698719 R 243233 CDS YP_113180.1 53805165 3102372 complement(699561..700244) 1 NC_002977.6 identified by similarity to SP:P09548; match to protein family HMM PF00597; DedA family protein 700244 3102372 MCA0667 Methylococcus capsulatus str. Bath DedA family protein YP_113180.1 699561 R 243233 CDS YP_113181.1 53805164 3102371 700511..701092 1 NC_002977.6 identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352; TonB domain-containing protein 701092 3102371 MCA0668 Methylococcus capsulatus str. Bath TonB domain-containing protein YP_113181.1 700511 D 243233 CDS YP_113182.1 53805154 3102410 701110..701766 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00199; match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein 701766 3102410 MCA0669 Methylococcus capsulatus str. Bath MotA/TolQ/ExbB proton channel family protein YP_113182.1 701110 D 243233 CDS YP_113183.1 53805153 3102731 701779..702189 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00200; match to protein family HMM PF02472; biopolymer ExbD/TolR family transporter 702189 3102731 MCA0670 Methylococcus capsulatus str. Bath biopolymer ExbD/TolR family transporter YP_113183.1 701779 D 243233 CDS YP_113184.1 53805152 3102730 702300..703175 1 NC_002977.6 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 703175 dapA 3102730 dapA Methylococcus capsulatus str. Bath dihydrodipicolinate synthase YP_113184.1 702300 D 243233 CDS YP_113185.1 53805151 3102240 703186..703893 1 NC_002977.6 lipoprotein 703893 3102240 MCA0672 Methylococcus capsulatus str. Bath lipoprotein YP_113185.1 703186 D 243233 CDS YP_113186.1 53805150 3102254 703934..707800 1 NC_002977.6 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 707800 purL 3102254 purL Methylococcus capsulatus str. Bath phosphoribosylformylglycinamidine synthase YP_113186.1 703934 D 243233 CDS YP_113187.1 53805149 3102253 707879..708631 1 NC_002977.6 identified by similarity to SP:P04790; match to protein family HMM PF00121; match to protein family HMM TIGR00419; triosephosphate isomerase 708631 tpiA 3102253 tpiA Methylococcus capsulatus str. Bath triosephosphate isomerase YP_113187.1 707879 D 243233 CDS YP_113188.1 53805148 3102221 708641..708994 1 NC_002977.6 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 708994 secG 3102221 secG Methylococcus capsulatus str. Bath preprotein translocase subunit SecG YP_113188.1 708641 D 243233 CDS YP_113189.1 53805147 3103351 709251..710162 1 NC_002977.6 phage integrase site specific recombinase 710162 3103351 MCA0676 Methylococcus capsulatus str. Bath phage integrase site specific recombinase YP_113189.1 709251 D 243233 CDS YP_113190.1 53805146 3103350 710623..711093 1 NC_002977.6 identified by similarity to GP:10312143; match to protein family HMM PF06114; hypothetical protein 711093 3103350 MCA0678 Methylococcus capsulatus str. Bath hypothetical protein YP_113190.1 710623 D 243233 CDS YP_113191.1 53805145 3104207 complement(711526..711618) 1 NC_002977.6 hypothetical protein 711618 3104207 MCA0680 Methylococcus capsulatus str. Bath hypothetical protein YP_113191.1 711526 R 243233 CDS YP_113192.1 53805144 3102289 712124..713236 1 NC_002977.6 identified by similarity to SP:P19675; match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449; queuine tRNA-ribosyltransferase 713236 tgt 3102289 tgt Methylococcus capsulatus str. Bath queuine tRNA-ribosyltransferase YP_113192.1 712124 D 243233 CDS YP_113193.1 53805143 3102288 713276..713632 1 NC_002977.6 identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739; preprotein translocase subunit YajC 713632 3102288 MCA0682 Methylococcus capsulatus str. Bath preprotein translocase subunit YajC YP_113193.1 713276 D 243233 CDS YP_113194.2 161579535 3104789 713696..715546 1 NC_002977.6 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 715546 secD 3104789 secD Methylococcus capsulatus str. Bath preprotein translocase subunit SecD YP_113194.2 713696 D 243233 CDS YP_113195.1 53805141 3102142 715558..716487 1 NC_002977.6 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 716487 secF 3102142 secF Methylococcus capsulatus str. Bath preprotein translocase subunit SecF YP_113195.1 715558 D 243233 CDS YP_113196.1 53805140 3102141 complement(716539..717420) 1 NC_002977.6 identified by similarity to GP:3462874; match to protein family HMM PF03734; hypothetical protein 717420 3102141 MCA0685 Methylococcus capsulatus str. Bath hypothetical protein YP_113196.1 716539 R 243233 CDS YP_113197.1 53805130 3102066 complement(717482..717766) 1 NC_002977.6 identified by similarity to SP:P58039; match to protein family HMM PF03692; hypothetical protein 717766 3102066 MCA0686 Methylococcus capsulatus str. Bath hypothetical protein YP_113197.1 717482 R 243233 CDS YP_113198.1 53805129 3102927 complement(717763..718206) 1 NC_002977.6 identified by match to protein family HMM PF01230; hypothetical protein 718206 3102927 MCA0687 Methylococcus capsulatus str. Bath hypothetical protein YP_113198.1 717763 R 243233 CDS YP_113199.1 53805128 3102926 complement(718203..719246) 1 NC_002977.6 identified by similarity to SP:P21516; match to protein family HMM PF02547; match to protein family HMM TIGR00113; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 719246 queA 3102926 queA Methylococcus capsulatus str. Bath S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_113199.1 718203 R 243233 CDS YP_113200.1 53805127 3103818 complement(719420..719743) 1 NC_002977.6 hypothetical protein 719743 3103818 MCA0689 Methylococcus capsulatus str. Bath hypothetical protein YP_113200.1 719420 R 243233 CDS YP_113201.1 53805126 3105093 719857..723273 1 NC_002977.6 identified by similarity to SP:P07648; match to protein family HMM PF04257; match to protein family HMM TIGR01450; exodeoxyribonuclease V subunit gamma 723273 recC 3105093 recC Methylococcus capsulatus str. Bath exodeoxyribonuclease V subunit gamma YP_113201.1 719857 D 243233 CDS YP_113202.1 53805125 3105092 723270..726872 1 NC_002977.6 identified by similarity to SP:P08394; match to protein family HMM PF00580; match to protein family HMM TIGR00609; exodeoxyribonuclease V subunit beta 726872 recB 3105092 recB Methylococcus capsulatus str. Bath exodeoxyribonuclease V subunit beta YP_113202.1 723270 D 243233 CDS YP_113203.1 53805124 3105042 726869..728680 1 NC_002977.6 identified by similarity to GP:16504071; match to protein family HMM TIGR01447; exodeoxyribonuclease V subunit alpha 728680 recD 3105042 recD Methylococcus capsulatus str. Bath exodeoxyribonuclease V subunit alpha YP_113203.1 726869 D 243233 CDS YP_113204.1 53805116 3103162 729200..731116 1 NC_002977.6 identified by similarity to SP:P00955; match to protein family HMM PF00587; match to protein family HMM PF02824; match to protein family HMM PF03129; match to protein family HMM TIGR00418; threonyl-tRNA synthetase 731116 thrS 3103162 thrS Methylococcus capsulatus str. Bath threonyl-tRNA synthetase YP_113204.1 729200 D 243233 CDS YP_113205.1 53805115 3104932 731689..731886 1 NC_002977.6 identified by similarity to SP:P07085; match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 731886 rpmI 3104932 rpmI Methylococcus capsulatus str. Bath 50S ribosomal protein L35 YP_113205.1 731689 D 243233 CDS YP_113206.1 53805114 3102241 731925..732272 1 NC_002977.6 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 732272 rplT 3102241 rplT Methylococcus capsulatus str. Bath 50S ribosomal protein L20 YP_113206.1 731925 D 243233 CDS YP_113207.1 53805113 3104892 732350..733375 1 NC_002977.6 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 733375 pheS 3104892 pheS Methylococcus capsulatus str. Bath phenylalanyl-tRNA synthetase subunit alpha YP_113207.1 732350 D 243233 CDS YP_113208.1 53805112 3104891 733403..735778 1 NC_002977.6 identified by similarity to SP:P07395; match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472; phenylalanyl-tRNA synthetase subunit beta 735778 pheT 3104891 pheT Methylococcus capsulatus str. Bath phenylalanyl-tRNA synthetase subunit beta YP_113208.1 733403 D 243233 CDS YP_113209.1 53805111 3104878 735783..736115 1 NC_002977.6 identified by similarity to SP:P06984; match to protein family HMM PF00216; match to protein family HMM TIGR00987; integration host factor subunit alpha 736115 ihfA 3104878 ihfA Methylococcus capsulatus str. Bath integration host factor subunit alpha YP_113209.1 735783 D 243233 CDS YP_113210.1 53805110 3104872 736321..737367 1 NC_002977.6 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 737367 argC 3104872 argC Methylococcus capsulatus str. Bath N-acetyl-gamma-glutamyl-phosphate reductase YP_113210.1 736321 D 243233 CDS YP_113211.1 53805109 3104871 737364..738329 1 NC_002977.6 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 738329 3104871 MCA0701 Methylococcus capsulatus str. Bath N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_113211.1 737364 D 243233 CDS YP_113212.1 53805108 3104813 738345..739445 1 NC_002977.6 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 739445 aroC 3104813 aroC Methylococcus capsulatus str. Bath chorismate synthase YP_113212.1 738345 D 243233 CDS YP_113213.1 53805107 3104765 739462..740610 1 NC_002977.6 identified by similarity to SP:Q47142; match to protein family HMM PF03825; match to protein family HMM PF07690; transporter 740610 3104765 MCA0703 Methylococcus capsulatus str. Bath transporter YP_113213.1 739462 D 243233 CDS YP_113214.1 53805106 3104764 complement(740576..741052) 1 NC_002977.6 identified by similarity to GP:1848058; hypothetical protein 741052 3104764 MCA0704 Methylococcus capsulatus str. Bath hypothetical protein YP_113214.1 740576 R 243233 CDS YP_113215.1 53805105 3104556 complement(741066..743405) 1 NC_002977.6 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 743405 3104556 MCA0705 Methylococcus capsulatus str. Bath copper-translocating P-type ATPase YP_113215.1 741066 R 243233 CDS YP_113216.1 53805104 3104795 743738..744028 1 NC_002977.6 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 744028 groES 3104795 groES Methylococcus capsulatus str. Bath co-chaperonin GroES YP_113216.1 743738 D 243233 CDS YP_113217.1 53805103 3104794 744091..745728 1 NC_002977.6 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 745728 groEL 3104794 groEL Methylococcus capsulatus str. Bath molecular chaperone GroEL YP_113217.1 744091 D 243233 CDS YP_113218.1 53805094 3102981 745897..747711 1 NC_002977.6 identified by similarity to GP:17132891; match to protein family HMM PF00535; glycosyl transferase group 2 family protein 747711 3102981 MCA0708 Methylococcus capsulatus str. Bath glycosyl transferase group 2 family protein YP_113218.1 745897 D 243233 CDS YP_113219.1 53805093 3102977 747708..749243 1 NC_002977.6 hypothetical protein 749243 3102977 MCA0709 Methylococcus capsulatus str. Bath hypothetical protein YP_113219.1 747708 D 243233 CDS YP_113220.1 53805092 3104977 749292..749861 1 NC_002977.6 identified by similarity to OMNI:NTL03PA02230; lipoprotein 749861 3104977 MCA0710 Methylococcus capsulatus str. Bath lipoprotein YP_113220.1 749292 D 243233 CDS YP_113221.1 53805091 3104976 749881..751149 1 NC_002977.6 identified by similarity to OMNI:VC2742; match to protein family HMM PF03631; match to protein family HMM TIGR00765; ribonuclease BN 751149 3104976 MCA0711 Methylococcus capsulatus str. Bath ribonuclease BN YP_113221.1 749881 D 243233 CDS YP_113222.1 53805090 3103757 751165..753381 1 NC_002977.6 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 753381 rlmL 3103757 rlmL Methylococcus capsulatus str. Bath 23S rRNA m(2)G2445 methyltransferase YP_113222.1 751165 D 243233 CDS YP_113223.1 53805089 3104627 753404..753682 1 NC_002977.6 identified by similarity to SP:O29440; match to protein family HMM PF00708; acylphosphatase 753682 3104627 MCA0713 Methylococcus capsulatus str. Bath acylphosphatase YP_113223.1 753404 D 243233 CDS YP_113224.1 53805088 3104626 complement(753689..754501) 1 NC_002977.6 identified by similarity to GP:6580646; hypothetical protein 754501 3104626 MCA0714 Methylococcus capsulatus str. Bath hypothetical protein YP_113224.1 753689 R 243233 CDS YP_113225.1 53805087 3104656 complement(754621..755016) 1 NC_002977.6 identified by match to protein family HMM PF01814; hemerythrin family protein 755016 3104656 MCA0715 Methylococcus capsulatus str. Bath hemerythrin family protein YP_113225.1 754621 R 243233 CDS YP_113226.1 53805086 3104620 755264..757051 1 NC_002977.6 hypothetical protein 757051 3104620 MCA0716 Methylococcus capsulatus str. Bath hypothetical protein YP_113226.1 755264 D 243233 CDS YP_113227.1 53805085 3104619 757132..757938 1 NC_002977.6 identified by similarity to GP:17430383; lipoprotein 757938 3104619 MCA0717 Methylococcus capsulatus str. Bath lipoprotein YP_113227.1 757132 D 243233 CDS YP_113228.1 53805084 3104600 757996..759417 1 NC_002977.6 identified by match to protein family HMM PF00324; amino acid permease 759417 3104600 MCA0718 Methylococcus capsulatus str. Bath amino acid permease YP_113228.1 757996 D 243233 CDS YP_113229.1 53805083 3102594 759414..759881 1 NC_002977.6 identified by similarity to SP:Q07705; match to protein family HMM PF00075; RNase H 759881 rnhA 3102594 rnhA Methylococcus capsulatus str. Bath RNase H YP_113229.1 759414 D 243233 CDS YP_113230.1 53805082 3102593 759892..760695 1 NC_002977.6 identified by similarity to SP:P03007; match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01406; DNA polymerase III subunit epsilon 760695 dnaQ 3102593 dnaQ Methylococcus capsulatus str. Bath DNA polymerase III subunit epsilon YP_113230.1 759892 D 243233 CDS YP_113231.1 53805081 3104576 complement(760774..760974) 1 NC_002977.6 hypothetical protein 760974 3104576 MCA0721 Methylococcus capsulatus str. Bath hypothetical protein YP_113231.1 760774 R 243233 CDS YP_113232.1 53805080 3104530 complement(761422..762522) 1 NC_002977.6 identified by match to protein family HMM PF01609; ISMca1, transposase 762522 3104530 MCA0723 Methylococcus capsulatus str. Bath ISMca1, transposase YP_113232.1 761422 R 243233 CDS YP_113233.1 53805079 3104529 complement(762597..763982) 1 NC_002977.6 identified by match to protein family HMM PF01360; match to protein family HMM PF01494; FAD-binding monooxygenase 763982 3104529 MCA0724 Methylococcus capsulatus str. Bath FAD-binding monooxygenase YP_113233.1 762597 R 243233 CDS YP_113234.1 53805078 3104902 complement(764011..764493) 1 NC_002977.6 identified by similarity to GP:17135269; hypothetical protein 764493 3104902 MCA0725 Methylococcus capsulatus str. Bath hypothetical protein YP_113234.1 764011 R 243233 CDS YP_113235.1 53805077 3104217 complement(764490..765095) 1 NC_002977.6 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 765095 3104217 MCA0726 Methylococcus capsulatus str. Bath TetR family transcriptional regulator YP_113235.1 764490 R 243233 CDS YP_113236.1 53805069 3103919 complement(765941..767665) 1 NC_002977.6 hypothetical protein 767665 3103919 MCA0729 Methylococcus capsulatus str. Bath hypothetical protein YP_113236.1 765941 R 243233 CDS YP_113237.1 53805068 3103918 complement(767646..770486) 1 NC_002977.6 hypothetical protein 770486 3103918 MCA0730 Methylococcus capsulatus str. Bath hypothetical protein YP_113237.1 767646 R 243233 CDS YP_113238.1 53805067 3104671 complement(770686..772437) 1 NC_002977.6 hypothetical protein 772437 3104671 MCA0731 Methylococcus capsulatus str. Bath hypothetical protein YP_113238.1 770686 R 243233 CDS YP_113239.1 53805066 3103800 773003..773692 1 NC_002977.6 identified by match to protein family HMM PF00665; transposase 773692 3103800 MCA0733 Methylococcus capsulatus str. Bath transposase YP_113239.1 773003 D 243233 CDS YP_113240.1 53805065 3103799 complement(775711..776559) 1 NC_002977.6 identified by match to protein family HMM PF00665; ISMca3, transposase, OrfB 776559 3103799 MCA0735 Methylococcus capsulatus str. Bath ISMca3, transposase, OrfB YP_113240.1 775711 R 243233 CDS YP_113241.1 53805056 3103604 complement(777502..779049) 1 NC_002977.6 identified by match to protein family HMM PF02310; match to protein family HMM PF04055; radical SAM protein 779049 3103604 MCA0738 Methylococcus capsulatus str. Bath radical SAM protein YP_113241.1 777502 R 243233 CDS YP_113242.1 53805055 3103534 complement(779207..780094) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04466; match to protein family HMM PF03668; hypothetical protein 780094 3103534 MCA0739 Methylococcus capsulatus str. Bath hypothetical protein YP_113242.1 779207 R 243233 CDS YP_113243.1 53805054 3103533 complement(780162..780458) 1 NC_002977.6 identified by similarity to GP:6141572; match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosomal subunit interface protein 780458 yfiA 3103533 yfiA Methylococcus capsulatus str. Bath ribosomal subunit interface protein YP_113243.1 780162 R 243233 CDS YP_113244.1 53805053 3103530 complement(780492..781955) 1 NC_002977.6 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 781955 rpoN 3103530 rpoN Methylococcus capsulatus str. Bath RNA polymerase factor sigma-54 YP_113244.1 780492 R 243233 CDS YP_113245.1 53804952 3103022 complement(782037..782762) 1 NC_002977.6 identified by similarity to SP:P45073; match to protein family HMM PF00005; ABC transporter ATP-binding protein 782762 3103022 MCA0742 Methylococcus capsulatus str. Bath ABC transporter ATP-binding protein YP_113245.1 782037 R 243233 CDS YP_113246.1 53804951 3102075 complement(782767..783300) 1 NC_002977.6 identified by similarity to OMNI:NMB0355; match to protein family HMM PF03968; hypothetical protein 783300 3102075 MCA0743 Methylococcus capsulatus str. Bath hypothetical protein YP_113246.1 782767 R 243233 CDS YP_113247.1 53804950 3104937 complement(783272..783796) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04460; match to protein family HMM PF06835; hypothetical protein 783796 3104937 MCA0744 Methylococcus capsulatus str. Bath hypothetical protein YP_113247.1 783272 R 243233 CDS YP_113248.1 53804949 3104936 complement(783844..784419) 1 NC_002977.6 identified by similarity to SP:P45396; match to protein family HMM TIGR01662; match to protein family HMM TIGR01670; YrbI family phosphatase 784419 3104936 MCA0745 Methylococcus capsulatus str. Bath YrbI family phosphatase YP_113248.1 783844 R 243233 CDS YP_113249.1 53804948 3102095 complement(784416..785408) 1 NC_002977.6 identified by similarity to SP:P45395; match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; sugar isomerase 785408 3102095 MCA0746 Methylococcus capsulatus str. Bath sugar isomerase YP_113249.1 784416 R 243233 CDS YP_113250.1 53804947 3104514 785596..786003 1 NC_002977.6 identified by similarity to SP:Q55752; match to protein family HMM PF03330; match to protein family HMM TIGR00413; rare lipoprotein A 786003 3104514 MCA0747 Methylococcus capsulatus str. Bath rare lipoprotein A YP_113250.1 785596 D 243233 CDS YP_113251.1 53804946 3104513 786068..786460 1 NC_002977.6 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; HesB/YadR/YfhF family protein 786460 3104513 MCA0748 Methylococcus capsulatus str. Bath HesB/YadR/YfhF family protein YP_113251.1 786068 D 243233 CDS YP_113252.1 53804945 3103078 786655..787848 1 NC_002977.6 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 787848 tyrS 3103078 tyrS Methylococcus capsulatus str. Bath tyrosyl-tRNA synthetase YP_113252.1 786655 D 243233 CDS YP_113255.1 53804932 3103903 complement(793377..794519) 1 NC_002977.6 hypothetical protein 794519 3103903 MCA0752 Methylococcus capsulatus str. Bath hypothetical protein YP_113255.1 793377 R 243233 CDS YP_113256.1 53804931 3103544 complement(794625..796265) 1 NC_002977.6 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 796265 gpmA 3103544 gpmA Methylococcus capsulatus str. Bath phosphoglyceromutase YP_113256.1 794625 R 243233 CDS YP_113257.1 53804930 3102341 complement(796292..797656) 1 NC_002977.6 identified by similarity to GP:17130435; hypothetical protein 797656 3102341 MCA0754 Methylococcus capsulatus str. Bath hypothetical protein YP_113257.1 796292 R 243233 CDS YP_113258.1 53804929 3102340 complement(797653..798945) 1 NC_002977.6 identified by match to protein family HMM PF01523; TldD/PmbA family protein 798945 3102340 MCA0755 Methylococcus capsulatus str. Bath TldD/PmbA family protein YP_113258.1 797653 R 243233 CDS YP_113259.1 53804928 3102391 799144..799749 1 NC_002977.6 hypothetical protein 799749 3102391 MCA0756 Methylococcus capsulatus str. Bath hypothetical protein YP_113259.1 799144 D 243233 CDS YP_113260.1 53804927 3102287 799746..800210 1 NC_002977.6 hypothetical protein 800210 3102287 MCA0757 Methylococcus capsulatus str. Bath hypothetical protein YP_113260.1 799746 D 243233 CDS YP_113261.1 53804926 3102286 800215..800532 1 NC_002977.6 identified by similarity to SP:P30743; match to protein family HMM PF00893; sugE protein 800532 sugE 3102286 sugE Methylococcus capsulatus str. Bath sugE protein YP_113261.1 800215 D 243233 CDS YP_113262.1 53804918 3103422 800656..800961 1 NC_002977.6 identified by similarity to OMNI:CC2267; hypothetical protein 800961 3103422 MCA0759 Methylococcus capsulatus str. Bath hypothetical protein YP_113262.1 800656 D 243233 CDS YP_113263.1 53804917 3102353 801213..801500 1 NC_002977.6 identified by similarity to SP:P16022; match to protein family HMM PF00111; (2Fe-2S) ferredoxin 801500 3102353 MCA0760 Methylococcus capsulatus str. Bath (2Fe-2S) ferredoxin YP_113263.1 801213 D 243233 CDS YP_113264.1 53804916 3102352 801552..801680 1 NC_002977.6 hypothetical protein 801680 3102352 MCA0761 Methylococcus capsulatus str. Bath hypothetical protein YP_113264.1 801552 D 243233 CDS YP_113265.1 53804915 3103413 complement(801763..802227) 1 NC_002977.6 identified by similarity to SP:P22759; match to protein family HMM PF00210; match to protein family HMM TIGR00754; bacterioferritin 802227 bfr-1 3103413 bfr-1 Methylococcus capsulatus str. Bath bacterioferritin YP_113265.1 801763 R 243233 CDS YP_113266.1 53804914 3102396 802377..803945 1 NC_002977.6 identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 803945 3102396 MCA0763 Methylococcus capsulatus str. Bath sensory box histidine kinase YP_113266.1 802377 D 243233 CDS YP_113267.1 53804913 3102395 803938..805473 1 NC_002977.6 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR01199; match to protein family HMM TIGR01817; transcriptional regulator NifA 805473 nifA 3102395 nifA Methylococcus capsulatus str. Bath transcriptional regulator NifA YP_113267.1 803938 D 243233 CDS YP_113268.1 53804912 3103708 805529..806413 1 NC_002977.6 hypothetical protein 806413 3103708 MCA0765 Methylococcus capsulatus str. Bath hypothetical protein YP_113268.1 805529 D 243233 CDS YP_113269.1 53804911 3102515 complement(806517..807038) 1 NC_002977.6 hypothetical protein 807038 3102515 MCA0766 Methylococcus capsulatus str. Bath hypothetical protein YP_113269.1 806517 R 243233 CDS YP_113270.1 53804910 3102514 807108..807458 1 NC_002977.6 identified by similarity to GP:10505056; match to protein family HMM TIGR00426; competence protein ComE 807458 3102514 MCA0767 Methylococcus capsulatus str. Bath competence protein ComE YP_113270.1 807108 D 243233 CDS YP_113271.1 53804901 3104972 complement(807524..808525) 1 NC_002977.6 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 808525 3104972 MCA0768 Methylococcus capsulatus str. Bath dihydroorotate dehydrogenase 2 YP_113271.1 807524 R 243233 CDS YP_113272.1 53804900 3103870 complement(808541..812107) 1 NC_002977.6 identified by similarity to SP:P52647; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM PF02775; match to protein family HMM TIGR02176; pyruvate ferredoxin/flavodoxin oxidoreductase 812107 3103870 MCA0769 Methylococcus capsulatus str. Bath pyruvate ferredoxin/flavodoxin oxidoreductase YP_113272.1 808541 R 243233 CDS YP_113273.1 53804899 3104211 complement(812113..813753) 1 NC_002977.6 unknown function; glutamate synthase 813753 3104211 MCA0770 Methylococcus capsulatus str. Bath glutamate synthase YP_113273.1 812113 R 243233 CDS YP_113274.1 53804898 3104210 complement(814117..815292) 1 NC_002977.6 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 815292 3104210 MCA0771 Methylococcus capsulatus str. Bath sensor histidine kinase YP_113274.1 814117 R 243233 CDS YP_113275.1 53804897 3102614 complement(815280..816011) 1 NC_002977.6 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 816011 3102614 MCA0772 Methylococcus capsulatus str. Bath DNA-binding response regulator YP_113275.1 815280 R 243233 CDS YP_113276.1 53804896 3104238 816733..819384 1 NC_002977.6 identified by similarity to SP:P04825; match to protein family HMM PF01433; aminopeptidase 819384 pepN 3104238 pepN Methylococcus capsulatus str. Bath aminopeptidase YP_113276.1 816733 D 243233 CDS YP_113277.1 53804895 3104237 819413..820441 1 NC_002977.6 identified by similarity to OMNI:MT1911; match to protein family HMM PF00107; alcohol dehydrogenase 820441 3104237 MCA0775 Methylococcus capsulatus str. Bath alcohol dehydrogenase YP_113277.1 819413 D 243233 CDS YP_113278.1 53804886 3102494 complement(820452..821021) 1 NC_002977.6 hypothetical protein 821021 3102494 MCA0776 Methylococcus capsulatus str. Bath hypothetical protein YP_113278.1 820452 R 243233 CDS YP_113279.1 53804885 3102173 complement(821027..821674) 1 NC_002977.6 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family transcriptional regulator 821674 3102173 MCA0777 Methylococcus capsulatus str. Bath LuxR family transcriptional regulator YP_113279.1 821027 R 243233 CDS YP_113280.1 53804884 3102523 complement(821671..822990) 1 NC_002977.6 identified by similarity to SP:P29905; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; methanol utilization control sensor protein moxY 822990 3102523 MCA0778 Methylococcus capsulatus str. Bath methanol utilization control sensor protein moxY YP_113280.1 821671 R 243233 CDS YP_113281.1 53804883 3102522 823278..825083 1 NC_002977.6 identified by similarity to SP:P16027; match to protein family HMM PF01011; methanol dehydrogenase, large subunit 825083 mxaF 3102522 mxaF Methylococcus capsulatus str. Bath methanol dehydrogenase, large subunit YP_113281.1 823278 D 243233 CDS YP_113282.1 53804882 3102719 825441..826013 1 NC_002977.6 identified by similarity to GP:7258335; MxaJ protein 826013 3102719 MCA0780 Methylococcus capsulatus str. Bath MxaJ protein YP_113282.1 825441 D 243233 CDS YP_113283.1 53804881 3104030 826019..826498 1 NC_002977.6 identified by similarity to SP:P14774; match to protein family HMM PF00034; cytochrome c family protein 826498 3104030 MCA0781 Methylococcus capsulatus str. Bath cytochrome c family protein YP_113283.1 826019 D 243233 CDS YP_113284.1 53804880 3104029 826540..826824 1 NC_002977.6 identified by similarity to SP:P14775; match to protein family HMM PF02315; methanol dehydrogenase, small subunit 826824 mxaI 3104029 mxaI Methylococcus capsulatus str. Bath methanol dehydrogenase, small subunit YP_113284.1 826540 D 243233 CDS YP_113285.1 53804871 3102135 826988..828007 1 NC_002977.6 identified by similarity to SP:P29901; moxR protein 828007 moxR 3102135 moxR Methylococcus capsulatus str. Bath moxR protein YP_113285.1 826988 D 243233 CDS YP_113286.1 53804870 3104041 828004..828846 1 NC_002977.6 identified by similarity to GP:19917169; hypothetical protein 828846 3104041 MCA0784 Methylococcus capsulatus str. Bath hypothetical protein YP_113286.1 828004 D 243233 CDS YP_113287.1 53804869 3102223 829035..829907 1 NC_002977.6 identified by similarity to GP:773180; MxaA protein 829907 3102223 MCA0785 Methylococcus capsulatus str. Bath MxaA protein YP_113287.1 829035 D 243233 CDS YP_113288.1 53804868 3102222 829904..830887 1 NC_002977.6 identified by similarity to GP:1164996; MxaC protein 830887 3102222 MCA0786 Methylococcus capsulatus str. Bath MxaC protein YP_113288.1 829904 D 243233 CDS YP_113289.1 53804867 3102525 830929..831447 1 NC_002977.6 identified by similarity to GP:2828246; MxaK protein 831447 3102525 MCA0787 Methylococcus capsulatus str. Bath MxaK protein YP_113289.1 830929 D 243233 CDS YP_113290.1 53804866 3104366 831444..832415 1 NC_002977.6 identified by similarity to GP:773183; MxaL protein 832415 3104366 MCA0788 Methylococcus capsulatus str. Bath MxaL protein YP_113290.1 831444 D 243233 CDS YP_113291.1 53804865 3104365 832434..832958 1 NC_002977.6 identified by similarity to GP:773184; MxaD protein 832958 3104365 MCA0789 Methylococcus capsulatus str. Bath MxaD protein YP_113291.1 832434 D 243233 CDS YP_113292.1 53804864 3102389 833983..835224 1 NC_002977.6 identified by similarity to OMNI:AF2308; transporter 835224 3102389 MCA0791 Methylococcus capsulatus str. Bath transporter YP_113292.1 833983 D 243233 CDS YP_113293.1 53804855 3103138 835417..835626 1 NC_002977.6 identified by similarity to SP:P80415; match to protein family HMM PF00313; cold shock protein 835626 3103138 MCA0792 Methylococcus capsulatus str. Bath cold shock protein YP_113293.1 835417 D 243233 CDS YP_113294.1 53804854 3103031 835640..836065 1 NC_002977.6 identified by similarity to GP:2624328; match to protein family HMM PF00076; RNA-binding protein 836065 3103031 MCA0793 Methylococcus capsulatus str. Bath RNA-binding protein YP_113294.1 835640 D 243233 CDS YP_113295.1 53804853 3104309 complement(836081..836749) 1 NC_002977.6 catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 836749 3104309 MCA0794 Methylococcus capsulatus str. Bath thiopurine S-methyltransferase YP_113295.1 836081 R 243233 CDS YP_113296.1 53804852 3104308 complement(836769..837131) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00360; hypothetical protein 837131 3104308 MCA0795 Methylococcus capsulatus str. Bath hypothetical protein YP_113296.1 836769 R 243233 CDS YP_113297.1 53804851 3104022 complement(837293..837880) 1 NC_002977.6 identified by match to protein family HMM PF05951; match to protein family HMM TIGR01409; Tat pathway signal sequence domain-containing protein 837880 3104022 MCA0796 Methylococcus capsulatus str. Bath Tat pathway signal sequence domain-containing protein YP_113297.1 837293 R 243233 CDS YP_113298.1 53804850 3103415 complement(838116..838799) 1 NC_002977.6 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR01691; HAD superfamily hydrolase 838799 3103415 MCA0797 Methylococcus capsulatus str. Bath HAD superfamily hydrolase YP_113298.1 838116 R 243233 CDS YP_113299.1 53804849 3103414 complement(838796..839356) 1 NC_002977.6 identified by match to protein family HMM PF03079; ARD/ARD' family dioxygenase 839356 3103414 MCA0798 Methylococcus capsulatus str. Bath ARD/ARD' family dioxygenase YP_113299.1 838796 R 243233 CDS YP_113300.1 53804848 3104864 complement(839353..840036) 1 NC_002977.6 catalyzes the formation of diketo methylthiopentyl phosphate from methylribulose phosphate in the methionine salvage pathway; methylthioribulose-1-phosphate dehydratase 840036 3104864 MCA0799 Methylococcus capsulatus str. Bath methylthioribulose-1-phosphate dehydratase YP_113300.1 839353 R 243233 CDS YP_113301.1 53804839 3104905 complement(840101..840892) 1 NC_002977.6 identified by similarity to GP:9947507; hypothetical protein 840892 3104905 MCA0800 Methylococcus capsulatus str. Bath hypothetical protein YP_113301.1 840101 R 243233 CDS YP_113302.1 53804838 3102727 841752..841961 1 NC_002977.6 hypothetical protein 841961 3102727 MCA0802 Methylococcus capsulatus str. Bath hypothetical protein YP_113302.1 841752 D 243233 CDS YP_113303.1 53804837 3102726 842004..842462 1 NC_002977.6 hypothetical protein 842462 3102726 MCA0803 Methylococcus capsulatus str. Bath hypothetical protein YP_113303.1 842004 D 243233 CDS YP_113304.1 53804836 3103669 842520..843104 1 NC_002977.6 hypothetical protein 843104 3103669 MCA0804 Methylococcus capsulatus str. Bath hypothetical protein YP_113304.1 842520 D 243233 CDS YP_113305.1 53804835 3103802 843097..845592 1 NC_002977.6 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 845592 3103802 MCA0805 Methylococcus capsulatus str. Bath copper-translocating P-type ATPase YP_113305.1 843097 D 243233 CDS YP_113306.1 53804834 3103801 845746..846396 1 NC_002977.6 identified by similarity to OMNI:NMB1963; hypothetical protein 846396 3103801 MCA0806 Methylococcus capsulatus str. Bath hypothetical protein YP_113306.1 845746 D 243233 CDS YP_113307.1 53804833 3102329 complement(846473..848152) 1 NC_002977.6 identified by match to protein family HMM PF05425; copper resistance protein 848152 3102329 MCA0807 Methylococcus capsulatus str. Bath copper resistance protein YP_113307.1 846473 R 243233 CDS YP_113308.1 53804832 3103563 complement(848171..848551) 1 NC_002977.6 identified by similarity to OMNI:NTL01ST1872; hypothetical protein 848551 3103563 MCA0808 Methylococcus capsulatus str. Bath hypothetical protein YP_113308.1 848171 R 243233 CDS YP_113309.1 53804831 3103562 complement(848578..849966) 1 NC_002977.6 identified by similarity to SP:Q58131; match to protein family HMM PF00202; acetylornithine aminotransferase 849966 3103562 MCA0809 Methylococcus capsulatus str. Bath acetylornithine aminotransferase YP_113309.1 848578 R 243233 CDS YP_113310.1 53804822 3103062 complement(850020..852674) 1 NC_002977.6 identified by similarity to GP:3164083; hypothetical protein 852674 3103062 MCA0810 Methylococcus capsulatus str. Bath hypothetical protein YP_113310.1 850020 R 243233 CDS YP_113311.1 53804821 3103565 complement(852683..853393) 1 NC_002977.6 identified by match to protein family HMM PF01048; phosphorylase 853393 3103565 MCA0811 Methylococcus capsulatus str. Bath phosphorylase YP_113311.1 852683 R 243233 CDS YP_113312.1 53804820 3102260 complement(853390..855354) 1 NC_002977.6 identified by similarity to GP:3164082; match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787; squalene-hopene cyclase 855354 sqhC 3102260 sqhC Methylococcus capsulatus str. Bath squalene-hopene cyclase YP_113312.1 853390 R 243233 CDS YP_113313.1 53804819 3102259 complement(855386..856474) 1 NC_002977.6 identified by similarity to GP:3164081; match to protein family HMM PF00494; squalene synthase 856474 sqs 3102259 sqs Methylococcus capsulatus str. Bath squalene synthase YP_113313.1 855386 R 243233 CDS YP_113314.1 53804818 3102093 856863..857978 1 NC_002977.6 identified by match to protein family HMM PF04055; MoaA/NifB/PqqE family protein 857978 3102093 MCA0815 Methylococcus capsulatus str. Bath MoaA/NifB/PqqE family protein YP_113314.1 856863 D 243233 CDS YP_113315.1 53804817 3103194 complement(858054..858569) 1 NC_002977.6 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 858569 apt 3103194 apt Methylococcus capsulatus str. Bath adenine phosphoribosyltransferase YP_113315.1 858054 R 243233 CDS YP_113316.1 53804816 3103193 complement(858569..860488) 1 NC_002977.6 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 860488 dxs 3103193 dxs Methylococcus capsulatus str. Bath 1-deoxy-D-xylulose-5-phosphate synthase YP_113316.1 858569 R 243233 CDS YP_113317.1 53804815 3104845 complement(860628..861530) 1 NC_002977.6 identified by similarity to SP:P45204; match to protein family HMM PF00348; geranyltranstransferase 861530 ispA 3104845 ispA Methylococcus capsulatus str. Bath geranyltranstransferase YP_113317.1 860628 R 243233 CDS YP_113318.1 53804806 3102058 complement(861520..861750) 1 NC_002977.6 identified by similarity to SP:P22938; match to protein family HMM PF02609; match to protein family HMM TIGR01280; exodeoxyribonuclease VII small subunit 861750 xseB 3102058 xseB Methylococcus capsulatus str. Bath exodeoxyribonuclease VII small subunit YP_113318.1 861520 R 243233 CDS YP_113319.1 53805052 3103701 861907..863793 1 NC_002977.6 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 863793 parE 3103701 parE Methylococcus capsulatus str. Bath DNA topoisomerase IV subunit B YP_113319.1 861907 D 243233 CDS YP_113320.1 53805051 3103700 863813..866047 1 NC_002977.6 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 866047 parC 3103700 parC Methylococcus capsulatus str. Bath DNA topoisomerase IV subunit A YP_113320.1 863813 D 243233 CDS YP_113321.1 53805050 3103519 866094..866264 1 NC_002977.6 hypothetical protein 866264 3103519 MCA0822 Methylococcus capsulatus str. Bath hypothetical protein YP_113321.1 866094 D 243233 CDS YP_113322.1 53805042 3103467 866292..867380 1 NC_002977.6 identified by match to protein family HMM PF00665; match to protein family HMM PF01527; ISMca4, transposase, OrfAB 867380 3103467 MCA0823 Methylococcus capsulatus str. Bath ISMca4, transposase, OrfAB YP_113322.1 866292 D 243233 CDS YP_113323.1 53805041 3104759 867863..868732 1 NC_002977.6 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 868732 3104759 MCA0825 Methylococcus capsulatus str. Bath AraC family transcriptional regulator YP_113323.1 867863 D 243233 CDS YP_113324.1 53805040 3102786 868964..869389 1 NC_002977.6 identified by similarity to GP:2828248; hypothetical protein 869389 3102786 MCA0826 Methylococcus capsulatus str. Bath hypothetical protein YP_113324.1 868964 D 243233 CDS YP_113325.1 53805039 3102785 complement(869400..869987) 1 NC_002977.6 identified by similarity to GP:15980550; match to protein family HMM PF01966; hypothetical protein 869987 3102785 MCA0827 Methylococcus capsulatus str. Bath hypothetical protein YP_113325.1 869400 R 243233 CDS YP_113326.1 53805038 3104443 869986..870561 1 NC_002977.6 chemotaxis protein CheW 870561 3104443 MCA0828 Methylococcus capsulatus str. Bath chemotaxis protein CheW YP_113326.1 869986 D 243233 CDS YP_113327.1 53805037 3103241 870552..871805 1 NC_002977.6 identified by match to protein family HMM PF01739; chemotaxis protein CheR 871805 3103241 MCA0829 Methylococcus capsulatus str. Bath chemotaxis protein CheR YP_113327.1 870552 D 243233 CDS YP_113328.1 53805036 3103240 871802..872455 1 NC_002977.6 chemotaxis protein CheW 872455 3103240 MCA0830 Methylococcus capsulatus str. Bath chemotaxis protein CheW YP_113328.1 871802 D 243233 CDS YP_113329.1 53805035 3103045 872452..874710 1 NC_002977.6 identified by similarity to SP:P18769; match to protein family HMM PF00072; match to protein family HMM PF01627; match to protein family HMM PF02518; chemotaxis protein 874710 3103045 MCA0831 Methylococcus capsulatus str. Bath chemotaxis protein YP_113329.1 872452 D 243233 CDS YP_113330.1 53805034 3104985 874707..875774 1 NC_002977.6 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 875774 3104985 MCA0832 Methylococcus capsulatus str. Bath chemotaxis-specific methylesterase YP_113330.1 874707 D 243233 CDS YP_113331.1 53805026 3102935 875767..876936 1 NC_002977.6 identified by match to protein family HMM PF00072; match to protein family HMM PF07228; response regulator 876936 3102935 MCA0833 Methylococcus capsulatus str. Bath response regulator YP_113331.1 875767 D 243233 CDS YP_113332.1 53805025 3102881 878862..880022 1 NC_002977.6 identified by similarity to OMNI:NTL01SMA01148; match to protein family HMM PF02661; Fic family protein 880022 3102881 MCA0835 Methylococcus capsulatus str. Bath Fic family protein YP_113332.1 878862 D 243233 CDS YP_113333.1 53805024 3103154 880101..881351 1 NC_002977.6 identified by match to protein family HMM PF01420; type I restriction-modification system subunit S 881351 3103154 MCA0836 Methylococcus capsulatus str. Bath type I restriction-modification system subunit S YP_113333.1 880101 D 243233 CDS YP_338556.1 77128444 3102853 881348..881968 1 NC_002977.6 identified by similarity to SP:P44014; hypothetical protein 881968 3102853 MCA0837 Methylococcus capsulatus str. Bath hypothetical protein YP_338556.1 881348 D 243233 CDS YP_113334.1 53805023 3102849 881968..885600 1 NC_002977.6 identified by match to protein family HMM PF01541; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; type I restriction-modification system, R subunit 885600 3102849 MCA0838 Methylococcus capsulatus str. Bath type I restriction-modification system, R subunit YP_113334.1 881968 D 243233 CDS YP_113335.1 53805022 3102848 complement(885644..886222) 1 NC_002977.6 hypothetical protein 886222 3102848 MCA0839 Methylococcus capsulatus str. Bath hypothetical protein YP_113335.1 885644 R 243233 CDS YP_113336.1 53805014 3102694 886241..886984 1 NC_002977.6 identified by similarity to SP:P30860; amino acid ABC transporter amino acid-binding protein 886984 3102694 MCA0840 Methylococcus capsulatus str. Bath amino acid ABC transporter amino acid-binding protein YP_113336.1 886241 D 243233 CDS YP_113337.1 53805013 3102693 complement(886981..887475) 1 NC_002977.6 identified by similarity to SP:P52035; match to protein family HMM PF00255; glutathione peroxidase 887475 bsaA 3102693 bsaA Methylococcus capsulatus str. Bath glutathione peroxidase YP_113337.1 886981 R 243233 CDS YP_113338.1 53805012 3102674 complement(887514..888689) 1 NC_002977.6 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 888689 3102674 MCA0842 Methylococcus capsulatus str. Bath diguanylate cyclase YP_113338.1 887514 R 243233 CDS YP_113339.1 53805011 3102835 complement(888926..889615) 1 NC_002977.6 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ 889615 3102835 MCA0843 Methylococcus capsulatus str. Bath sulfite oxidase subunit YedZ YP_113339.1 888926 R 243233 CDS YP_113340.1 53805010 3102834 complement(889584..890516) 1 NC_002977.6 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY 890516 3102834 MCA0844 Methylococcus capsulatus str. Bath sulfite oxidase subunit YedY YP_113340.1 889584 R 243233 CDS YP_113341.1 53805009 3102664 complement(890592..891017) 1 NC_002977.6 hypothetical protein 891017 3102664 MCA0845 Methylococcus capsulatus str. Bath hypothetical protein YP_113341.1 890592 R 243233 CDS YP_113342.1 53805008 3104987 complement(891054..891599) 1 NC_002977.6 hypothetical protein 891599 3104987 MCA0846 Methylococcus capsulatus str. Bath hypothetical protein YP_113342.1 891054 R 243233 CDS YP_113343.1 53805007 3104986 891889..893178 1 NC_002977.6 identified by similarity to SP:Q10530; match to protein family HMM PF00285; match to protein family HMM TIGR01798; citrate synthase 893178 gltA 3104986 gltA Methylococcus capsulatus str. Bath citrate synthase YP_113343.1 891889 D 243233 CDS YP_113344.1 53804998 3104903 complement(893231..895135) 1 NC_002977.6 molecular chaperone; heat shock protein 90 895135 htpG 3104903 htpG Methylococcus capsulatus str. Bath heat shock protein 90 YP_113344.1 893231 R 243233 CDS YP_113345.1 53804997 3104870 complement(895495..896517) 1 NC_002977.6 identified by match to protein family HMM PF01699; cation transporter 896517 3104870 MCA0850 Methylococcus capsulatus str. Bath cation transporter YP_113345.1 895495 R 243233 CDS YP_113346.1 53804996 3102359 complement(896534..898447) 1 NC_002977.6 identified by similarity to SP:P28691; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; cell division protein FtsH 898447 ftsH-1 3102359 ftsH-1 Methylococcus capsulatus str. Bath cell division protein FtsH YP_113346.1 896534 R 243233 CDS YP_113347.1 53804995 3102258 complement(899506..902040) 1 NC_002977.6 identified by match to protein family HMM PF05362; ATP-dependent protease 902040 3102258 MCA0853 Methylococcus capsulatus str. Bath ATP-dependent protease YP_113347.1 899506 R 243233 CDS YP_113348.1 53804994 3102257 902058..902990 1 NC_002977.6 Required for efficient pilin antigenic variation; recombination associated protein 902990 rdgC 3102257 rdgC Methylococcus capsulatus str. Bath recombination associated protein YP_113348.1 902058 D 243233 CDS YP_113349.1 53804993 3102235 903021..904106 1 NC_002977.6 identified by similarity to OMNI:NTL03PA02854; match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 904106 3102235 MCA0855 Methylococcus capsulatus str. Bath ErfK/YbiS/YcfS/YnhG family protein YP_113349.1 903021 D 243233 CDS YP_113350.1 53804992 3102175 complement(904186..904458) 1 NC_002977.6 identified by similarity to GP:17428249; match to protein family HMM PF04362; hypothetical protein 904458 3102175 MCA0856 Methylococcus capsulatus str. Bath hypothetical protein YP_113350.1 904186 R 243233 CDS YP_113351.1 53804983 3103542 complement(904474..905535) 1 NC_002977.6 identified by similarity to SP:P17802; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; A/G-specific adenine glycosylase 905535 mutY 3103542 mutY Methylococcus capsulatus str. Bath A/G-specific adenine glycosylase YP_113351.1 904474 R 243233 CDS YP_113352.1 53804982 3103541 905765..907012 1 NC_002977.6 identified by similarity to SP:P19572; match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase 907012 lysA 3103541 lysA Methylococcus capsulatus str. Bath diaminopimelate decarboxylase YP_113352.1 905765 D 243233 CDS YP_113353.1 53804981 3104609 907022..907849 1 NC_002977.6 identified by similarity to SP:P08885; match to protein family HMM PF01678; match to protein family HMM TIGR00652; diaminopimelate epimerase 907849 dapF 3104609 dapF Methylococcus capsulatus str. Bath diaminopimelate epimerase YP_113353.1 907022 D 243233 CDS YP_113354.1 53804980 3105081 907846..908550 1 NC_002977.6 identified by similarity to OMNI:NTL03PA05280; match to protein family HMM PF04340; hypothetical protein 908550 3105081 MCA0860 Methylococcus capsulatus str. Bath hypothetical protein YP_113354.1 907846 D 243233 CDS YP_113355.1 53804979 3105080 908558..909472 1 NC_002977.6 identified by similarity to SP:P22885; match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02224; integrase/recombinase XerC 909472 xerC 3105080 xerC Methylococcus capsulatus str. Bath integrase/recombinase XerC YP_113355.1 908558 D 243233 CDS YP_113356.1 53804978 3103389 909441..910571 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04843; hypothetical protein 910571 3103389 MCA0862 Methylococcus capsulatus str. Bath hypothetical protein YP_113356.1 909441 D 243233 CDS YP_113357.1 53804977 3103225 910596..910889 1 NC_002977.6 identified by similarity to OMNI:NTL03PA01616; hypothetical protein 910889 3103225 MCA0863 Methylococcus capsulatus str. Bath hypothetical protein YP_113357.1 910596 D 243233 CDS YP_113358.1 53804976 3103224 complement(910891..911439) 1 NC_002977.6 identified by similarity to OMNI:VC2536; match to protein family HMM PF04751; hypothetical protein 911439 3103224 MCA0864 Methylococcus capsulatus str. Bath hypothetical protein YP_113358.1 910891 R 243233 CDS YP_113359.1 53804966 3103483 complement(911526..912335) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04030; match to protein family HMM PF06167; hypothetical protein 912335 3103483 MCA0865 Methylococcus capsulatus str. Bath hypothetical protein YP_113359.1 911526 R 243233 CDS YP_113360.1 53804965 3105087 912399..913913 1 NC_002977.6 identified by similarity to GP:18145308; match to protein family HMM PF04055; oxygen-independent coproporphyrinogen III oxidase 913913 3105087 MCA0866 Methylococcus capsulatus str. Bath oxygen-independent coproporphyrinogen III oxidase YP_113360.1 912399 D 243233 CDS YP_113361.1 53804964 3105086 913980..914573 1 NC_002977.6 identified by match to protein family HMM PF01713; Smr domain-containing protein 914573 3105086 MCA0867 Methylococcus capsulatus str. Bath Smr domain-containing protein YP_113361.1 913980 D 243233 CDS YP_113362.1 53804963 3102293 914570..915667 1 NC_002977.6 identified by similarity to GP:17131131; hypothetical protein 915667 3102293 MCA0868 Methylococcus capsulatus str. Bath hypothetical protein YP_113362.1 914570 D 243233 CDS YP_113363.1 53804962 3103639 complement(915687..916739) 1 NC_002977.6 identified by similarity to SP:P23861; match to protein family HMM PF01547; spermidine/putrescine ABC transporter substrate-binding protein 916739 potD 3103639 potD Methylococcus capsulatus str. Bath spermidine/putrescine ABC transporter substrate-binding protein YP_113363.1 915687 R 243233 CDS YP_113364.1 53804961 3103638 complement(916712..917524) 1 NC_002977.6 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter 917524 potC 3103638 potC Methylococcus capsulatus str. Bath spermidine/putrescine ABC transporter YP_113364.1 916712 R 243233 CDS YP_113365.1 53804960 3103110 complement(917624..918478) 1 NC_002977.6 identified by similarity to SP:P23860; match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease PotB 918478 potB 3103110 potB Methylococcus capsulatus str. Bath spermidine/putrescine ABC transporter permease PotB YP_113365.1 917624 R 243233 CDS YP_113366.1 53804959 3104271 complement(918462..919619) 1 NC_002977.6 functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase 919619 potA 3104271 potA Methylococcus capsulatus str. Bath putrescine/spermidine ABC transporter ATPase YP_113366.1 918462 R 243233 CDS YP_113367.1 53804958 3104270 919871..920374 1 NC_002977.6 ATP-dependent protease La 920374 3104270 MCA0873 Methylococcus capsulatus str. Bath ATP-dependent protease La YP_113367.1 919871 D 243233 CDS YP_113368.1 53804957 3104290 920385..921584 1 NC_002977.6 identified by similarity to SP:P77234; hypothetical protein 921584 3104290 MCA0874 Methylococcus capsulatus str. Bath hypothetical protein YP_113368.1 920385 D 243233 CDS YP_113369.1 53804956 3104591 921704..923695 1 NC_002977.6 identified by match to protein family HMM PF00082; match to protein family HMM PF05922; serine protease 923695 3104591 MCA0875 Methylococcus capsulatus str. Bath serine protease YP_113369.1 921704 D 243233 CDS YP_113370.1 53804955 3104590 923746..924225 1 NC_002977.6 hypothetical protein 924225 3104590 MCA0876 Methylococcus capsulatus str. Bath hypothetical protein YP_113370.1 923746 D 243233 CDS YP_113371.1 53804954 3104277 complement(924243..924821) 1 NC_002977.6 exonuclease 924821 3104277 MCA0877 Methylococcus capsulatus str. Bath exonuclease YP_113371.1 924243 R 243233 CDS YP_113372.1 53804953 3103023 925060..925539 1 NC_002977.6 identified by similarity to OMNI:NTL02ML2446; hypothetical protein 925539 3103023 MCA0878 Methylococcus capsulatus str. Bath hypothetical protein YP_113372.1 925060 D 243233 CDS YP_113373.1 53804943 3103862 925588..926709 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00106; match to protein family HMM PF00034; match to protein family HMM PF00116; match to protein family HMM PF02790; cytochrome c oxidase subunit II 926709 3103862 MCA0879 Methylococcus capsulatus str. Bath cytochrome c oxidase subunit II YP_113373.1 925588 D 243233 CDS YP_113374.1 53804942 3105003 926742..928367 1 NC_002977.6 identified by similarity to SP:P31833; match to protein family HMM PF00115; cytochrome c oxidase subunit I 928367 3105003 MCA0880 Methylococcus capsulatus str. Bath cytochrome c oxidase subunit I YP_113374.1 926742 D 243233 CDS YP_113375.1 53804941 3104847 928419..928529 1 NC_002977.6 hypothetical protein 928529 3104847 MCA0881 Methylococcus capsulatus str. Bath hypothetical protein YP_113375.1 928419 D 243233 CDS YP_113376.1 53804940 3104846 928526..929074 1 NC_002977.6 involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 929074 3104846 MCA0882 Methylococcus capsulatus str. Bath cytochrome C oxidase assembly protein YP_113376.1 928526 D 243233 CDS YP_113377.1 53804939 3103561 929111..929977 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00109; match to protein family HMM PF00510; cytochrome c oxidase subunit III 929977 3103561 MCA0883 Methylococcus capsulatus str. Bath cytochrome c oxidase subunit III YP_113377.1 929111 D 243233 CDS YP_113378.1 53804938 3103432 complement(932446..933396) 1 NC_002977.6 identified by match to protein family HMM PF01609; ISMca7, transposase 933396 3103432 MCA0887 Methylococcus capsulatus str. Bath ISMca7, transposase YP_113378.1 932446 R 243233 CDS YP_113379.1 53805179 3102827 933497..933970 1 NC_002977.6 identified by similarity to GP:18144127; hypothetical protein 933970 3102827 MCA0888 Methylococcus capsulatus str. Bath hypothetical protein YP_113379.1 933497 D 243233 CDS YP_113380.1 53804937 3102218 936887..937921 1 NC_002977.6 identified by similarity to GP:18159248; match to protein family HMM PF04055; hypothetical protein 937921 3102218 MCA0891 Methylococcus capsulatus str. Bath hypothetical protein YP_113380.1 936887 D 243233 CDS YP_113381.1 53804936 3102217 937918..938208 1 NC_002977.6 identified by similarity to GP:18144126; hypothetical protein 938208 3102217 MCA0892 Methylococcus capsulatus str. Bath hypothetical protein YP_113381.1 937918 D 243233 CDS YP_113382.1 53804935 3105032 938257..939087 1 NC_002977.6 hypothetical protein 939087 3105032 MCA0893 Methylococcus capsulatus str. Bath hypothetical protein YP_113382.1 938257 D 243233 CDS YP_113383.1 53804934 3105031 939163..940965 1 NC_002977.6 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 940965 3105031 MCA0894 Methylococcus capsulatus str. Bath ABC transporter ATP-binding protein/permease YP_113383.1 939163 D 243233 CDS YP_113384.1 53804805 3103923 complement(942432..943286) 1 NC_002977.6 hypothetical protein 943286 3103923 MCA0898 Methylococcus capsulatus str. Bath hypothetical protein YP_113384.1 942432 R 243233 CDS YP_113385.1 53804804 3103922 complement(943502..944518) 1 NC_002977.6 identified by similarity to SP:P06997; match to protein family HMM PF01547; match to protein family HMM TIGR00971; sulfate starvation-induced protein 2 944518 3103922 MCA0899 Methylococcus capsulatus str. Bath sulfate starvation-induced protein 2 YP_113385.1 943502 R 243233 CDS YP_113386.1 53804803 3104836 complement(944587..946206) 1 NC_002977.6 hypothetical protein 946206 3104836 MCA0900 Methylococcus capsulatus str. Bath hypothetical protein YP_113386.1 944587 R 243233 CDS YP_113387.1 53804802 3103121 946878..947702 1 NC_002977.6 identified by match to protein family HMM PF00953; glycosyl transferase family protein 947702 3103121 MCA0902 Methylococcus capsulatus str. Bath glycosyl transferase family protein YP_113387.1 946878 D 243233 CDS YP_113388.1 53804801 3103120 947706..949553 1 NC_002977.6 identified by match to protein family HMM PF02719; polysaccharide biosynthesis protein 949553 3103120 MCA0903 Methylococcus capsulatus str. Bath polysaccharide biosynthesis protein YP_113388.1 947706 D 243233 CDS YP_113389.1 53804800 3104251 949633..950061 1 NC_002977.6 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 950061 rplM 3104251 rplM Methylococcus capsulatus str. Bath 50S ribosomal protein L13 YP_113389.1 949633 D 243233 CDS YP_113390.1 53804799 3104877 950078..950470 1 NC_002977.6 identified by similarity to SP:P02363; match to protein family HMM PF00380; 30S ribosomal protein S9 950470 rpsI 3104877 rpsI Methylococcus capsulatus str. Bath 30S ribosomal protein S9 YP_113390.1 950078 D 243233 CDS YP_113391.1 53804784 3102080 950923..951255 1 NC_002977.6 identified by match to protein family HMM PF01527; ISMca2, transposase, OrfA 951255 3102080 MCA0906 Methylococcus capsulatus str. Bath ISMca2, transposase, OrfA YP_113391.1 950923 D 243233 CDS YP_113392.1 53804783 3102079 951252..952127 1 NC_002977.6 identified by match to protein family HMM PF00665; ISMca2, transposase, OrfB 952127 3102079 MCA0907 Methylococcus capsulatus str. Bath ISMca2, transposase, OrfB YP_113392.1 951252 D 243233 CDS YP_113393.1 53804782 3104754 complement(952211..953740) 1 NC_002977.6 identified by match to protein family HMM PF00004; ATPase AAA 953740 3104754 MCA0908 Methylococcus capsulatus str. Bath ATPase AAA YP_113393.1 952211 R 243233 CDS YP_113394.1 53804781 3103450 complement(953897..954274) 1 NC_002977.6 identified by similarity to OMNI:NTL01SMB00214; hypothetical protein 954274 3103450 MCA0909 Methylococcus capsulatus str. Bath hypothetical protein YP_113394.1 953897 R 243233 CDS YP_113395.1 53804780 3103449 complement(954361..954939) 1 NC_002977.6 identified by similarity to GP:13786684; match to protein family HMM PF00484; carbonic anhydrase 954939 3103449 MCA0910 Methylococcus capsulatus str. Bath carbonic anhydrase YP_113395.1 954361 R 243233 CDS YP_113396.1 53804779 3102382 complement(954974..955618) 1 NC_002977.6 identified by similarity to GP:17129730; match to protein family HMM PF06080; hypothetical protein 955618 3102382 MCA0911 Methylococcus capsulatus str. Bath hypothetical protein YP_113396.1 954974 R 243233 CDS YP_113397.1 53804778 3102741 955844..957490 1 NC_002977.6 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator 957490 3102741 MCA0913 Methylococcus capsulatus str. Bath sigma-54 dependent transcriptional regulator YP_113397.1 955844 D 243233 CDS YP_113398.1 53804777 3102740 957595..957960 1 NC_002977.6 Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; acyl carrier protein 957960 3102740 MCA0914 Methylococcus capsulatus str. Bath acyl carrier protein YP_113398.1 957595 D 243233 CDS YP_113399.1 53804767 3104760 957924..958634 1 NC_002977.6 identified by similarity to GP:19483795; hypothetical protein 958634 3104760 MCA0915 Methylococcus capsulatus str. Bath hypothetical protein YP_113399.1 957924 D 243233 CDS YP_113400.1 53804766 3103032 960284..961231 1 NC_002977.6 hypothetical protein 961231 3103032 MCA0917 Methylococcus capsulatus str. Bath hypothetical protein YP_113400.1 960284 D 243233 CDS YP_113401.1 53804765 3102960 961273..961818 1 NC_002977.6 identified by similarity to GP:17427440; lipoprotein 961818 3102960 MCA0918 Methylococcus capsulatus str. Bath lipoprotein YP_113401.1 961273 D 243233 CDS YP_113402.1 53804764 3102959 961815..964190 1 NC_002977.6 identified by similarity to GP:17427439; hypothetical protein 964190 3102959 MCA0919 Methylococcus capsulatus str. Bath hypothetical protein YP_113402.1 961815 D 243233 CDS YP_113403.1 53804763 3104310 964187..964999 1 NC_002977.6 identified by match to protein family HMM PF01522; polysaccharide deacetylase 964999 3104310 MCA0920 Methylococcus capsulatus str. Bath polysaccharide deacetylase YP_113403.1 964187 D 243233 CDS YP_113404.1 53804762 3102582 964996..965721 1 NC_002977.6 identified by similarity to GP:6959523; hypothetical protein 965721 3102582 MCA0921 Methylococcus capsulatus str. Bath hypothetical protein YP_113404.1 964996 D 243233 CDS YP_113405.1 53804761 3102581 complement(965866..966666) 1 NC_002977.6 hypothetical protein 966666 3102581 MCA0922 Methylococcus capsulatus str. Bath hypothetical protein YP_113405.1 965866 R 243233 CDS YP_113406.1 53804752 3103296 complement(966650..966784) 1 NC_002977.6 hypothetical protein 966784 3103296 MCA0923 Methylococcus capsulatus str. Bath hypothetical protein YP_113406.1 966650 R 243233 CDS YP_113407.1 53804751 3102313 966842..968032 1 NC_002977.6 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 968032 3102313 MCA0924 Methylococcus capsulatus str. Bath 3-oxoacyl-ACP synthase YP_113407.1 966842 D 243233 CDS YP_113408.1 53804750 3105014 968029..968829 1 NC_002977.6 identified by similarity to GP:17427436; beta-ketoacyl synthase domain-containing protein 968829 3105014 MCA0925 Methylococcus capsulatus str. Bath beta-ketoacyl synthase domain-containing protein YP_113408.1 968029 D 243233 CDS YP_113409.1 53804749 3105013 968820..969281 1 NC_002977.6 identified by similarity to SP:P21773; (3R)-hydroxymyristoyl-ACP dehydratase 969281 3105013 MCA0926 Methylococcus capsulatus str. Bath (3R)-hydroxymyristoyl-ACP dehydratase YP_113409.1 968820 D 243233 CDS YP_113410.1 53804748 3102445 969278..969997 1 NC_002977.6 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 969997 fabG 3102445 fabG Methylococcus capsulatus str. Bath 3-ketoacyl-ACP reductase YP_113410.1 969278 D 243233 CDS YP_113411.1 53804747 3102169 970013..971305 1 NC_002977.6 identified by similarity to OMNI:NTL01SS00413; sodium/hydrogen exchanger family protein 971305 3102169 MCA0928 Methylococcus capsulatus str. Bath sodium/hydrogen exchanger family protein YP_113411.1 970013 D 243233 CDS YP_113412.1 53804746 3102168 complement(971356..971682) 1 NC_002977.6 hypothetical protein 971682 3102168 MCA0929 Methylococcus capsulatus str. Bath hypothetical protein YP_113412.1 971356 R 243233 CDS YP_338557.1 77128445 3703673 complement(972303..972596) 1 NC_002977.6 identified by match to protein family HMM TIGR01873; CRISPR-associated Cas2 family protein 972596 3703673 MCA0929.1 Methylococcus capsulatus str. Bath CRISPR-associated Cas2 family protein YP_338557.1 972303 R 243233 CDS YP_113413.1 53804737 3102101 complement(972568..973458) 1 NC_002977.6 identified by similarity to GP:16504011; match to protein family HMM TIGR00287; CRISPR-associated Cas1 family protein 973458 3102101 MCA0930 Methylococcus capsulatus str. Bath CRISPR-associated Cas1 family protein YP_113413.1 972568 R 243233 CDS YP_113414.1 53804736 3104787 complement(973455..974174) 1 NC_002977.6 CRISPR-associated Cse3 family protein 974174 3104787 MCA0931 Methylococcus capsulatus str. Bath CRISPR-associated Cse3 family protein YP_113414.1 973455 R 243233 CDS YP_113415.1 53804735 3104729 complement(974171..974920) 1 NC_002977.6 identified by similarity to OMNI:NTL01EC02697; match to protein family HMM TIGR01868; CRISPR-associated Cas5e family protein 974920 3104729 MCA0932 Methylococcus capsulatus str. Bath CRISPR-associated Cas5e family protein YP_113415.1 974171 R 243233 CDS YP_113416.1 53804734 3104728 complement(974931..976175) 1 NC_002977.6 identified by similarity to GP:16504014; match to protein family HMM TIGR01869; CRISPR-associated Cse4 family protein 976175 3104728 MCA0933 Methylococcus capsulatus str. Bath CRISPR-associated Cse4 family protein YP_113416.1 974931 R 243233 CDS YP_113417.1 53804733 3102534 complement(976249..976761) 1 NC_002977.6 CT1973 family; identified by match to protein family HMM TIGR02548; CRISPR-associated protein 976761 3102534 MCA0934 Methylococcus capsulatus str. Bath CRISPR-associated protein YP_113417.1 976249 R 243233 CDS YP_113418.1 53804732 3104282 complement(976739..978301) 1 NC_002977.6 CT1972 family; identified by match to protein family HMM TIGR02547; CRISPR-associated protein 978301 3104282 MCA0935 Methylococcus capsulatus str. Bath CRISPR-associated protein YP_113418.1 976739 R 243233 CDS YP_113419.1 53804731 3104281 complement(978285..980930) 1 NC_002977.6 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR01587; CRISPR-associated helicase Cas3 980930 3104281 MCA0936 Methylococcus capsulatus str. Bath CRISPR-associated helicase Cas3 YP_113419.1 978285 R 243233 CDS YP_113420.1 53804722 3102670 981768..982226 1 NC_002977.6 identified by similarity to SP:P19934; hypothetical protein 982226 3102670 MCA0938 Methylococcus capsulatus str. Bath hypothetical protein YP_113420.1 981768 D 243233 CDS YP_113421.1 53804721 3102669 982720..983109 1 NC_002977.6 identified by similarity to GP:15979130; match to protein family HMM PF00034; cytochrome c family protein 983109 3102669 MCA0940 Methylococcus capsulatus str. Bath cytochrome c family protein YP_113421.1 982720 D 243233 CDS YP_113422.1 53804720 3103992 complement(983200..985626) 1 NC_002977.6 identified by match to protein family HMM PF01301; glycosyl hydrolase 985626 3103992 MCA0941 Methylococcus capsulatus str. Bath glycosyl hydrolase YP_113422.1 983200 R 243233 CDS YP_113423.1 53804719 3102553 complement(985637..987256) 1 NC_002977.6 identified by similarity to PIR:JE0181; match to protein family HMM PF00128; oligo-1,6-glucosidase 987256 3102553 MCA0942 Methylococcus capsulatus str. Bath oligo-1,6-glucosidase YP_113423.1 985637 R 243233 CDS YP_113424.1 53804718 3102552 complement(987253..988371) 1 NC_002977.6 hypothetical protein 988371 3102552 MCA0943 Methylococcus capsulatus str. Bath hypothetical protein YP_113424.1 987253 R 243233 CDS YP_113425.1 53804717 3103202 988370..988729 1 NC_002977.6 hypothetical protein 988729 3103202 MCA0944 Methylococcus capsulatus str. Bath hypothetical protein YP_113425.1 988370 D 243233 CDS YP_113426.1 53804716 3103631 988824..989513 1 NC_002977.6 identified by similarity to SP:Q49116; hypothetical protein 989513 3103631 MCA0945 Methylococcus capsulatus str. Bath hypothetical protein YP_113426.1 988824 D 243233 CDS YP_113427.1 53804715 3103630 989799..991337 1 NC_002977.6 hypothetical protein 991337 3103630 MCA0947 Methylococcus capsulatus str. Bath hypothetical protein YP_113427.1 989799 D 243233 CDS YP_113428.1 53804714 3102369 991386..991757 1 NC_002977.6 identified by match to protein family HMM PF00034; cytochrome c family protein 991757 3102369 MCA0948 Methylococcus capsulatus str. Bath cytochrome c family protein YP_113428.1 991386 D 243233 CDS YP_113429.1 53804700 3104964 991850..992905 1 NC_002977.6 identified by similarity to SP:P39665; phosphate binding protein 992905 3104964 MCA0949 Methylococcus capsulatus str. Bath phosphate binding protein YP_113429.1 991850 D 243233 CDS YP_113430.1 53804699 3102187 993263..994288 1 NC_002977.6 identified by match to protein family HMM PF01425; amidase 994288 3102187 MCA0950 Methylococcus capsulatus str. Bath amidase YP_113430.1 993263 D 243233 CDS YP_113431.1 53804698 3104167 994343..995344 1 NC_002977.6 hypothetical protein 995344 3104167 MCA0951 Methylococcus capsulatus str. Bath hypothetical protein YP_113431.1 994343 D 243233 CDS YP_113432.1 53804697 3104166 complement(995346..996077) 1 NC_002977.6 identified by similarity to SP:P33929; match to protein family HMM PF01578; match to protein family HMM TIGR01191; heme exporter protein CcmC 996077 ccmC 3104166 ccmC Methylococcus capsulatus str. Bath heme exporter protein CcmC YP_113432.1 995346 R 243233 CDS YP_113433.1 53804696 3104298 complement(996082..996759) 1 NC_002977.6 identified by match to protein family HMM PF03379; match to protein family HMM TIGR01190; heme exporter protein CcmB 996759 ccmB 3104298 ccmB Methylococcus capsulatus str. Bath heme exporter protein CcmB YP_113433.1 996082 R 243233 CDS YP_113434.1 53804695 3104815 complement(996935..997501) 1 NC_002977.6 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01189; heme exporter protein CcmA 997501 ccmA 3104815 ccmA Methylococcus capsulatus str. Bath heme exporter protein CcmA YP_113434.1 996935 R 243233 CDS YP_113435.1 53804694 3104814 complement(997607..998578) 1 NC_002977.6 hypothetical protein 998578 3104814 MCA0955 Methylococcus capsulatus str. Bath hypothetical protein YP_113435.1 997607 R 243233 CDS YP_113436.1 53804693 3102164 complement(998578..1000257) 1 NC_002977.6 identified by similarity to SP:Q50925; hydroxylamine oxidoreductase 1000257 3102164 MCA0956 Methylococcus capsulatus str. Bath hydroxylamine oxidoreductase YP_113436.1 998578 R 243233 CDS YP_113437.1 53804692 3104075 complement(1000316..1001032) 1 NC_002977.6 identified by similarity to SP:P22037; match to protein family HMM PF02308; MgtC family protein 1001032 3104075 MCA0957 Methylococcus capsulatus str. Bath MgtC family protein YP_113437.1 1000316 R 243233 CDS YP_113438.1 53804683 3104104 complement(1001034..1001780) 1 NC_002977.6 hypothetical protein 1001780 3104104 MCA0958 Methylococcus capsulatus str. Bath hypothetical protein YP_113438.1 1001034 R 243233 CDS YP_113439.1 53804682 3104103 complement(1001839..1002489) 1 NC_002977.6 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD-superfamily hydrolase 1002489 3104103 MCA0959 Methylococcus capsulatus str. Bath HAD-superfamily hydrolase YP_113439.1 1001839 R 243233 CDS YP_113440.1 53804681 3102866 complement(1002486..1002812) 1 NC_002977.6 identified by similarity to OMNI:NTL01BH3878; match to protein family HMM PF00903; glyoxalase 1002812 3102866 MCA0960 Methylococcus capsulatus str. Bath glyoxalase YP_113440.1 1002486 R 243233 CDS YP_113441.1 53804680 3105083 1002860..1004218 1 NC_002977.6 catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 1004218 3105083 MCA0961 Methylococcus capsulatus str. Bath aminopeptidase YP_113441.1 1002860 D 243233 CDS YP_113442.1 53804679 3105082 complement(1004204..1005733) 1 NC_002977.6 hypothetical protein 1005733 3105082 MCA0962 Methylococcus capsulatus str. Bath hypothetical protein YP_113442.1 1004204 R 243233 CDS YP_113443.1 53804678 3104733 complement(1005733..1008012) 1 NC_002977.6 identified by match to protein family HMM PF01757; acyltransferase 1008012 3104733 MCA0963 Methylococcus capsulatus str. Bath acyltransferase YP_113443.1 1005733 R 243233 CDS YP_113444.1 53804677 3103805 1007963..1009768 1 NC_002977.6 identified by similarity to SP:P27299; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02203; lipid A export ATP-binding/permease MsbA 1009768 msbA 3103805 msbA Methylococcus capsulatus str. Bath lipid A export ATP-binding/permease MsbA YP_113444.1 1007963 D 243233 CDS YP_113445.1 53804676 3103804 1009839..1010276 1 NC_002977.6 hypothetical protein 1010276 3103804 MCA0965 Methylococcus capsulatus str. Bath hypothetical protein YP_113445.1 1009839 D 243233 CDS YP_113446.1 53804668 3103030 1010404..1011564 1 NC_002977.6 identified by similarity to SP:P07460; match to protein family HMM PF00549; match to protein family HMM PF02222; match to protein family HMM TIGR01016; succinyl-CoA synthetase subunit beta 1011564 sucC-1 3103030 sucC-1 Methylococcus capsulatus str. Bath succinyl-CoA synthetase subunit beta YP_113446.1 1010404 D 243233 CDS YP_113447.1 53804667 3103029 1011561..1012433 1 NC_002977.6 identified by similarity to SP:P07459; match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019; succinyl-CoA synthetase subunit alpha 1012433 sucD-1 3103029 sucD-1 Methylococcus capsulatus str. Bath succinyl-CoA synthetase subunit alpha YP_113447.1 1011561 D 243233 CDS YP_113448.1 53804666 3105066 1012471..1014090 1 NC_002977.6 identified by similarity to SP:Q03638; match to protein family HMM PF00795; match to protein family HMM PF02540; match to protein family HMM TIGR00552; NAD(+) synthetase 1014090 3105066 MCA0969 Methylococcus capsulatus str. Bath NAD(+) synthetase YP_113448.1 1012471 D 243233 CDS YP_113449.1 53804665 3104655 complement(1014060..1015004) 1 NC_002977.6 identified by similarity to OMNI:DRA0055; match to protein family HMM PF00294; carbohydrate kinase 1015004 3104655 MCA0970 Methylococcus capsulatus str. Bath carbohydrate kinase YP_113449.1 1014060 R 243233 CDS YP_113450.1 53804664 3104654 complement(1014977..1015837) 1 NC_002977.6 identified by similarity to SP:Q50985; match to protein family HMM PF03696; competence lipoprotein ComL 1015837 comL 3104654 comL Methylococcus capsulatus str. Bath competence lipoprotein ComL YP_113450.1 1014977 R 243233 CDS YP_113451.1 53804663 3104912 1015882..1016886 1 NC_002977.6 identified by similarity to SP:P33643; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase D 1016886 rluD 3104912 rluD Methylococcus capsulatus str. Bath ribosomal large subunit pseudouridine synthase D YP_113451.1 1015882 D 243233 CDS YP_113452.1 53804662 3102985 1016886..1017608 1 NC_002977.6 identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein 1017608 3102985 MCA0973 Methylococcus capsulatus str. Bath hypothetical protein YP_113452.1 1016886 D 243233 CDS YP_113453.1 53804654 3102472 1017632..1017946 1 NC_002977.6 identified by similarity to GP:17429246; hypothetical protein 1017946 3102472 MCA0974 Methylococcus capsulatus str. Bath hypothetical protein YP_113453.1 1017632 D 243233 CDS YP_113454.1 53804653 3104050 1018103..1018450 1 NC_002977.6 ZIP zinc transporter domain-containing protein 1018450 3104050 MCA0975 Methylococcus capsulatus str. Bath ZIP zinc transporter domain-containing protein YP_113454.1 1018103 D 243233 CDS YP_113455.1 53804925 3102317 complement(1018437..1020317) 1 NC_002977.6 identified by similarity to SP:P30016; match to protein family HMM PF02705; potassium uptake protein, Kup system 1020317 3102317 MCA0976 Methylococcus capsulatus str. Bath potassium uptake protein, Kup system YP_113455.1 1018437 R 243233 CDS YP_113456.1 53804924 3102466 complement(1020393..1020710) 1 NC_002977.6 identified by match to protein family HMM PF00543; nitrogen regulatory protein P-II 1020710 3102466 MCA0977 Methylococcus capsulatus str. Bath nitrogen regulatory protein P-II YP_113456.1 1020393 R 243233 CDS YP_113457.1 53804923 3104445 complement(1020707..1023772) 1 NC_002977.6 identified by match to protein family HMM TIGR00914; CzcA family heavy metal efflux protein 1023772 3104445 MCA0978 Methylococcus capsulatus str. Bath CzcA family heavy metal efflux protein YP_113457.1 1020707 R 243233 CDS YP_113458.1 53804922 3104444 complement(1023769..1024530) 1 NC_002977.6 identified by similarity to SP:P77239; transporter 1024530 3104444 MCA0979 Methylococcus capsulatus str. Bath transporter YP_113458.1 1023769 R 243233 CDS YP_113459.1 53804921 3103553 complement(1024687..1025787) 1 NC_002977.6 identified by match to protein family HMM PF01609; ISMca1, transposase 1025787 3103553 MCA0980 Methylococcus capsulatus str. Bath ISMca1, transposase YP_113459.1 1024687 R 243233 CDS YP_113460.1 53804920 3103123 complement(1025862..1026257) 1 NC_002977.6 lipoprotein 1026257 3103123 MCA0981 Methylococcus capsulatus str. Bath lipoprotein YP_113460.1 1025862 R 243233 CDS YP_113461.1 53804919 3103122 1026594..1027124 1 NC_002977.6 identified by match to protein family HMM PF00011; HSP20 family protein 1027124 3103122 MCA0982 Methylococcus capsulatus str. Bath HSP20 family protein YP_113461.1 1026594 D 243233 CDS YP_113462.1 53804909 3102565 1027237..1027902 1 NC_002977.6 identified by similarity to GP:19914454; hypothetical protein 1027902 3102565 MCA0983 Methylococcus capsulatus str. Bath hypothetical protein YP_113462.1 1027237 D 243233 CDS YP_113463.1 53804908 3102564 1027920..1030352 1 NC_002977.6 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein 1030352 3102564 MCA0984 Methylococcus capsulatus str. Bath sensory box protein YP_113463.1 1027920 D 243233 CDS YP_113464.1 53804907 3102462 1030441..1033371 1 NC_002977.6 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein 1033371 3102462 MCA0985 Methylococcus capsulatus str. Bath sensory box protein YP_113464.1 1030441 D 243233 CDS YP_113465.1 53804906 3103293 complement(1033988..1034308) 1 NC_002977.6 identified by similarity to GP:17942398; match to protein family HMM PF00355; Rieske 2Fe-2S family protein 1034308 3103293 MCA0987 Methylococcus capsulatus str. Bath Rieske 2Fe-2S family protein YP_113465.1 1033988 R 243233 CDS YP_113466.1 53804905 3103137 complement(1034322..1034702) 1 NC_002977.6 identified by similarity to SP:P77310; match to protein family HMM PF01592; match to protein family HMM TIGR01994; NifU family protein 1034702 3103137 MCA0988 Methylococcus capsulatus str. Bath NifU family protein YP_113466.1 1034322 R 243233 CDS YP_113467.1 53804904 3103136 complement(1034777..1036021) 1 NC_002977.6 identified by similarity to SP:P77444; match to protein family HMM PF00266; match to protein family HMM TIGR01979; selenocysteine lyase 1036021 csdB 3103136 csdB Methylococcus capsulatus str. Bath selenocysteine lyase YP_113467.1 1034777 R 243233 CDS YP_113468.1 53804903 3102947 complement(1036035..1037339) 1 NC_002977.6 identified by similarity to SP:P77689; match to protein family HMM PF01458; match to protein family HMM TIGR01981; FeS assembly protein SufD 1037339 sufD 3102947 sufD Methylococcus capsulatus str. Bath FeS assembly protein SufD YP_113468.1 1036035 R 243233 CDS YP_113469.1 53804902 3104973 complement(1037341..1038105) 1 NC_002977.6 identified by similarity to OMNI:NTL01ST1368; match to protein family HMM PF00005; match to protein family HMM TIGR01978; FeS assembly ATPase SufC 1038105 sufC 3104973 sufC Methylococcus capsulatus str. Bath FeS assembly ATPase SufC YP_113469.1 1037341 R 243233 CDS YP_113470.1 53804894 3102973 complement(1038135..1039580) 1 NC_002977.6 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 1039580 sufB 3102973 sufB Methylococcus capsulatus str. Bath cysteine desulfurase activator complex subunit SufB YP_113470.1 1038135 R 243233 CDS YP_113471.1 53804893 3104983 complement(1039600..1040061) 1 NC_002977.6 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; Rrf2 family protein 1040061 3104983 MCA0993 Methylococcus capsulatus str. Bath Rrf2 family protein YP_113471.1 1039600 R 243233 CDS YP_113472.1 53804892 3104982 1040383..1041363 1 NC_002977.6 identified by similarity to GP:17428164; hypothetical protein 1041363 3104982 MCA0994 Methylococcus capsulatus str. Bath hypothetical protein YP_113472.1 1040383 D 243233 CDS YP_113473.1 53804891 3104492 1041536..1043185 1 NC_002977.6 identified by similarity to SP:P23234; match to protein family HMM PF00205; match to protein family HMM PF02776; thiamine pyrophosphate enzyme family decarboxylase 1043185 3104492 MCA0996 Methylococcus capsulatus str. Bath thiamine pyrophosphate enzyme family decarboxylase YP_113473.1 1041536 D 243233 CDS YP_113474.1 53804890 3103656 complement(1043235..1045166) 1 NC_002977.6 identified by similarity to OMNI:NTL01PA01213; hypothetical protein 1045166 3103656 MCA0997 Methylococcus capsulatus str. Bath hypothetical protein YP_113474.1 1043235 R 243233 CDS YP_113475.1 53804889 3103655 complement(1045206..1045982) 1 NC_002977.6 identified by similarity to SP:P76145; methyltransferase 1045982 3103655 MCA0998 Methylococcus capsulatus str. Bath methyltransferase YP_113475.1 1045206 R 243233 CDS YP_113476.1 53804888 3102945 complement(1046085..1046975) 1 NC_002977.6 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1046975 3102945 MCA0999 Methylococcus capsulatus str. Bath LysR family transcriptional regulator YP_113476.1 1046085 R 243233 CDS YP_113477.1 53804887 3102495 1047066..1047854 1 NC_002977.6 identified by similarity to GP:12323420; hypothetical protein 1047854 3102495 MCA1000 Methylococcus capsulatus str. Bath hypothetical protein YP_113477.1 1047066 D 243233 CDS YP_113478.1 53804879 3102252 complement(1048158..1048637) 1 NC_002977.6 identified by similarity to GP:17135359; hypothetical protein 1048637 3102252 MCA1001 Methylococcus capsulatus str. Bath hypothetical protein YP_113478.1 1048158 R 243233 CDS YP_113479.1 53804878 3103761 complement(1048642..1049298) 1 NC_002977.6 identified by match to protein family HMM PF02798; glutathione S-transferase 1049298 3103761 MCA1002 Methylococcus capsulatus str. Bath glutathione S-transferase YP_113479.1 1048642 R 243233 CDS YP_113480.1 53804877 3103760 1049465..1051129 1 NC_002977.6 identified by similarity to OMNI:NTL02ML0419; match to protein family HMM PF01471; hypothetical protein 1051129 3103760 MCA1003 Methylococcus capsulatus str. Bath hypothetical protein YP_113480.1 1049465 D 243233 CDS YP_113481.1 53804876 3104925 complement(1051131..1053848) 1 NC_002977.6 identified by similarity to SP:P37278; match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation transporter E1-E2 family ATPase 1053848 3104925 MCA1004 Methylococcus capsulatus str. Bath cation transporter E1-E2 family ATPase YP_113481.1 1051131 R 243233 CDS YP_113482.1 53804875 3103466 1054017..1055648 1 NC_002977.6 identified by match to protein family HMM PF01384; phosphate transporter family protein 1055648 3103466 MCA1005 Methylococcus capsulatus str. Bath phosphate transporter family protein YP_113482.1 1054017 D 243233 CDS YP_113483.1 53804874 3103465 complement(1055676..1058111) 1 NC_002977.6 identified by similarity to OMNI:NTL01AA00691; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01553; acyltransferase 1058111 3103465 MCA1006 Methylococcus capsulatus str. Bath acyltransferase YP_113483.1 1055676 R 243233 CDS YP_113484.1 53804873 3103649 1058093..1058782 1 NC_002977.6 hypothetical protein 1058782 3103649 MCA1007 Methylococcus capsulatus str. Bath hypothetical protein YP_113484.1 1058093 D 243233 CDS YP_113485.1 53804872 3102136 1059000..1059629 1 NC_002977.6 identified by similarity to GP:18144241; hypothetical protein 1059629 3102136 MCA1009 Methylococcus capsulatus str. Bath hypothetical protein YP_113485.1 1059000 D 243233 CDS YP_113486.1 53804863 3102652 complement(1059680..1059967) 1 NC_002977.6 identified by similarity to GP:1666299; match to protein family HMM PF00076; RNA-binding protein 1059967 3102652 MCA1010 Methylococcus capsulatus str. Bath RNA-binding protein YP_113486.1 1059680 R 243233 CDS YP_113487.1 53804862 3102230 1060280..1061641 1 NC_002977.6 identified by similarity to GP:17427549; match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase 1061641 3102230 MCA1011 Methylococcus capsulatus str. Bath DEAD/DEAH box helicase YP_113487.1 1060280 D 243233 CDS YP_113488.1 53804861 3102229 1061889..1062902 1 NC_002977.6 identified by similarity to OMNI:NT01MC2863; hypothetical protein 1062902 3102229 MCA1012 Methylococcus capsulatus str. Bath hypothetical protein YP_113488.1 1061889 D 243233 CDS YP_113489.1 53804860 3104966 1063111..1065831 1 NC_002977.6 identified by similarity to GP:17427439; hypothetical protein 1065831 3104966 MCA1013 Methylococcus capsulatus str. Bath hypothetical protein YP_113489.1 1063111 D 243233 CDS YP_113490.1 53804859 3105030 1065975..1066673 1 NC_002977.6 hypothetical protein 1066673 3105030 MCA1014 Methylococcus capsulatus str. Bath hypothetical protein YP_113490.1 1065975 D 243233 CDS YP_113491.1 53804858 3105029 1066678..1067481 1 NC_002977.6 hypothetical protein 1067481 3105029 MCA1015 Methylococcus capsulatus str. Bath hypothetical protein YP_113491.1 1066678 D 243233 CDS YP_113492.1 53804857 3103867 1067515..1068624 1 NC_002977.6 identified by similarity to SP:O05616; match to protein family HMM PF00355; dioxygenase, iron-sulfur subunit 1068624 3103867 MCA1016 Methylococcus capsulatus str. Bath dioxygenase, iron-sulfur subunit YP_113492.1 1067515 D 243233 CDS YP_113493.1 53804856 3103139 1068621..1069607 1 NC_002977.6 nucleoside diphosphate sugar epimerase 1069607 3103139 MCA1017 Methylococcus capsulatus str. Bath nucleoside diphosphate sugar epimerase YP_113493.1 1068621 D 243233 CDS YP_113494.1 53804847 3102402 complement(1069585..1071030) 1 NC_002977.6 identified by similarity to OMNI:NTL02SC5233; match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 1071030 3102402 MCA1018 Methylococcus capsulatus str. Bath ErfK/YbiS/YcfS/YnhG family protein YP_113494.1 1069585 R 243233 CDS YP_113495.1 53804846 3102401 1071120..1072790 1 NC_002977.6 identified by similarity to OMNI:NT01MC4376; hypothetical protein 1072790 3102401 MCA1019 Methylococcus capsulatus str. Bath hypothetical protein YP_113495.1 1071120 D 243233 CDS YP_113496.1 53804845 3103844 1072938..1073417 1 NC_002977.6 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphoesterase 1073417 3103844 MCA1020 Methylococcus capsulatus str. Bath phosphoesterase YP_113496.1 1072938 D 243233 CDS YP_113497.1 53804844 3102051 complement(1073428..1074588) 1 NC_002977.6 identified by match to protein family HMM PF00155; aminotransferase 1074588 3102051 MCA1021 Methylococcus capsulatus str. Bath aminotransferase YP_113497.1 1073428 R 243233 CDS YP_113498.1 53804843 3102050 1074776..1075708 1 NC_002977.6 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A 1075708 cysK 3102050 cysK Methylococcus capsulatus str. Bath cysteine synthase A YP_113498.1 1074776 D 243233 CDS YP_113499.1 53804842 3104124 complement(1076157..1076762) 1 NC_002977.6 identified by match to protein family HMM PF00578; AhpC/Tsa family antioxidant 1076762 3104124 MCA1023 Methylococcus capsulatus str. Bath AhpC/Tsa family antioxidant YP_113499.1 1076157 R 243233 CDS YP_113500.1 53804841 3103641 complement(1076918..1077364) 1 NC_002977.6 hypothetical protein 1077364 3103641 MCA1024 Methylococcus capsulatus str. Bath hypothetical protein YP_113500.1 1076918 R 243233 CDS YP_113501.1 53804840 3103640 complement(1077574..1077921) 1 NC_002977.6 hypothetical protein 1077921 3103640 MCA1025 Methylococcus capsulatus str. Bath hypothetical protein YP_113501.1 1077574 R 243233 CDS YP_113502.1 53804830 3102751 complement(1078093..1078530) 1 NC_002977.6 hypothetical protein 1078530 3102751 MCA1026 Methylococcus capsulatus str. Bath hypothetical protein YP_113502.1 1078093 R 243233 CDS YP_113503.1 53804829 3103211 complement(1078669..1080003) 1 NC_002977.6 identified by similarity to OMNI:CC1782; match to protein family HMM PF03929; hypothetical protein 1080003 3103211 MCA1027 Methylococcus capsulatus str. Bath hypothetical protein YP_113503.1 1078669 R 243233 CDS YP_113504.1 53804828 3103210 complement(1080010..1080969) 1 NC_002977.6 identified by similarity to SP:P08466; match to protein family HMM PF01223; endonuclease 1080969 3103210 MCA1028 Methylococcus capsulatus str. Bath endonuclease YP_113504.1 1080010 R 243233 CDS YP_113505.1 53804827 3102502 complement(1081064..1081699) 1 NC_002977.6 hypothetical protein 1081699 3102502 MCA1029 Methylococcus capsulatus str. Bath hypothetical protein YP_113505.1 1081064 R 243233 CDS YP_113506.1 53804826 3104180 complement(1081877..1083001) 1 NC_002977.6 identified by similarity to SP:P80053; match to protein family HMM PF00208; match to protein family HMM PF02812; glutamate dehydrogenase 1083001 gluD 3104180 gluD Methylococcus capsulatus str. Bath glutamate dehydrogenase YP_113506.1 1081877 R 243233 CDS YP_113507.1 53804825 3104179 complement(1083145..1083504) 1 NC_002977.6 ribosomal subunit interface protein 1083504 3104179 MCA1031 Methylococcus capsulatus str. Bath ribosomal subunit interface protein YP_113507.1 1083145 R 243233 CDS YP_113508.1 53804824 3102226 1083865..1086072 1 NC_002977.6 identified by similarity to SP:P46837; match to protein family HMM PF00575; S1 RNA-binding domain-containing protein 1086072 3102226 MCA1032 Methylococcus capsulatus str. Bath S1 RNA-binding domain-containing protein YP_113508.1 1083865 D 243233 CDS YP_113509.1 53804823 3103063 complement(1086083..1087093) 1 NC_002977.6 identified by similarity to OMNI:CC2083; hypothetical protein 1087093 3103063 MCA1033 Methylococcus capsulatus str. Bath hypothetical protein YP_113509.1 1086083 R 243233 CDS YP_113510.1 53804814 3104900 1087438..1088244 1 NC_002977.6 identified by similarity to OMNI:NMB0869; match to protein family HMM PF01564; hypothetical protein 1088244 3104900 MCA1034 Methylococcus capsulatus str. Bath hypothetical protein YP_113510.1 1087438 D 243233 CDS YP_113511.1 53804813 3104899 1088628..1088798 1 NC_002977.6 hypothetical protein 1088798 3104899 MCA1036 Methylococcus capsulatus str. Bath hypothetical protein YP_113511.1 1088628 D 243233 CDS YP_113512.1 53804812 3103087 complement(1088886..1091066) 1 NC_002977.6 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 1091066 uvrD 3103087 uvrD Methylococcus capsulatus str. Bath DNA-dependent helicase II YP_113512.1 1088886 R 243233 CDS YP_113513.1 53804811 3102393 1091241..1091504 1 NC_002977.6 hypothetical protein 1091504 3102393 MCA1038 Methylococcus capsulatus str. Bath hypothetical protein YP_113513.1 1091241 D 243233 CDS YP_113514.1 53804810 3102392 complement(1091543..1091974) 1 NC_002977.6 identified by similarity to SP:P37147; match to protein family HMM PF04186; fxsA protein 1091974 3102392 MCA1039 Methylococcus capsulatus str. Bath fxsA protein YP_113514.1 1091543 R 243233 CDS YP_113515.1 53804809 3102491 1092022..1092345 1 NC_002977.6 identified by similarity to SP:P36654; match to protein family HMM PF03091; divalent cation tolerance protein 1092345 3102491 MCA1040 Methylococcus capsulatus str. Bath divalent cation tolerance protein YP_113515.1 1092022 D 243233 CDS YP_113516.1 53804808 3103676 1092330..1094567 1 NC_002977.6 identified by similarity to SP:P36655; match to protein family HMM PF02683; DsbD family thiol:disulfide interchange protein 1094567 3103676 MCA1041 Methylococcus capsulatus str. Bath DsbD family thiol:disulfide interchange protein YP_113516.1 1092330 D 243233 CDS YP_113517.1 53804807 3103675 1094668..1095075 1 NC_002977.6 thiol:disulfide interchange protein like protein 1095075 3103675 MCA1042 Methylococcus capsulatus str. Bath thiol:disulfide interchange protein like protein YP_113517.1 1094668 D 243233 CDS YP_113518.1 53804798 3104876 1095088..1095207 1 NC_002977.6 hypothetical protein 1095207 3104876 MCA1043 Methylococcus capsulatus str. Bath hypothetical protein YP_113518.1 1095088 D 243233 CDS YP_113519.1 53804797 3105079 1095186..1095632 1 NC_002977.6 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 1095632 aroQ 3105079 aroQ Methylococcus capsulatus str. Bath 3-dehydroquinate dehydratase YP_113519.1 1095186 D 243233 CDS YP_113520.1 53804796 3103850 1095633..1096088 1 NC_002977.6 identified by similarity to SP:P02905; match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase, biotin carboxyl carrier protein 1096088 accB 3103850 accB Methylococcus capsulatus str. Bath acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_113520.1 1095633 D 243233 CDS YP_113521.1 53804795 3103849 1096131..1097477 1 NC_002977.6 identified by similarity to SP:P24182; match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514; acetyl-CoA carboxylase, biotin carboxylase 1097477 accC 3103849 accC Methylococcus capsulatus str. Bath acetyl-CoA carboxylase, biotin carboxylase YP_113521.1 1096131 D 243233 CDS YP_113522.1 53804794 3102179 1097482..1098363 1 NC_002977.6 identified by similarity to SP:P28637; match to protein family HMM PF06325; match to protein family HMM TIGR00406; 50S ribosomal protein L11 methyltransferase 1098363 prmA 3102179 prmA Methylococcus capsulatus str. Bath 50S ribosomal protein L11 methyltransferase YP_113522.1 1097482 D 243233 CDS YP_113523.1 53804793 3102275 1098366..1099055 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04852; match to protein family HMM TIGR02098; hypothetical protein 1099055 3102275 MCA1048 Methylococcus capsulatus str. Bath hypothetical protein YP_113523.1 1098366 D 243233 CDS YP_113524.1 53804792 3102274 1099135..1100334 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00355; hypothetical protein 1100334 3102274 MCA1049 Methylococcus capsulatus str. Bath hypothetical protein YP_113524.1 1099135 D 243233 CDS YP_113525.1 53804791 3103659 complement(1100344..1101198) 1 NC_002977.6 identified by similarity to SP:P37186; match to protein family HMM TIGR00536; protein methyltransferase HemK 1101198 hemK 3103659 hemK Methylococcus capsulatus str. Bath protein methyltransferase HemK YP_113525.1 1100344 R 243233 CDS YP_113526.1 53804790 3103419 complement(1101203..1102285) 1 NC_002977.6 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1102285 prfA 3103419 prfA Methylococcus capsulatus str. Bath peptide chain release factor 1 YP_113526.1 1101203 R 243233 CDS YP_113527.1 53804789 3103418 complement(1102282..1103544) 1 NC_002977.6 identified by similarity to SP:P13580; match to protein family HMM PF00745; match to protein family HMM PF05200; match to protein family HMM PF05201; match to protein family HMM TIGR01035; glutamyl-tRNA reductase 1103544 hemA 3103418 hemA Methylococcus capsulatus str. Bath glutamyl-tRNA reductase YP_113527.1 1102282 R 243233 CDS YP_113528.1 53804652 3104049 1103820..1105580 1 NC_002977.6 identified by match to protein family HMM PF00515; hypothetical protein 1105580 3104049 MCA1053 Methylococcus capsulatus str. Bath hypothetical protein YP_113528.1 1103820 D 243233 CDS YP_113529.1 53804651 3103717 1105580..1106188 1 NC_002977.6 identified by similarity to SP:P24208; match to protein family HMM PF03550; match to protein family HMM TIGR00548; molecular chaperone LolB 1106188 3103717 MCA1054 Methylococcus capsulatus str. Bath molecular chaperone LolB YP_113529.1 1105580 D 243233 CDS YP_113530.1 53804650 3104018 1106161..1107036 1 NC_002977.6 identified by similarity to SP:P24209; match to protein family HMM PF00288; match to protein family HMM TIGR00154; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1107036 ispE 3104018 ispE Methylococcus capsulatus str. Bath 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_113530.1 1106161 D 243233 CDS YP_113531.1 53804649 3104017 1107178..1108113 1 NC_002977.6 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1108113 prsA 3104017 prsA Methylococcus capsulatus str. Bath ribose-phosphate pyrophosphokinase YP_113531.1 1107178 D 243233 CDS YP_113532.1 53804648 3103773 1108163..1108771 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04672; match to protein family HMM PF01386; match to protein family HMM TIGR00731; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 1108771 ctc 3103773 ctc Methylococcus capsulatus str. Bath ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 YP_113532.1 1108163 D 243233 CDS YP_113533.1 53804632 3102908 1108785..1109348 1 NC_002977.6 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1109348 pth 3102908 pth Methylococcus capsulatus str. Bath peptidyl-tRNA hydrolase YP_113533.1 1108785 D 243233 CDS YP_113534.1 53804631 3102907 1109771..1110961 1 NC_002977.6 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1110961 tuf-1 3102907 tuf-1 Methylococcus capsulatus str. Bath elongation factor Tu YP_113534.1 1109771 D 243233 CDS YP_113535.1 53804630 3103854 1111143..1111517 1 NC_002977.6 identified by similarity to SP:P16920; match to protein family HMM PF00584; match to protein family HMM TIGR00964; Preprotein translocase subunit SecE 1111517 secE 3103854 secE Methylococcus capsulatus str. Bath Preprotein translocase subunit SecE YP_113535.1 1111143 D 243233 CDS YP_113536.1 53804629 3105063 1111530..1112063 1 NC_002977.6 identified by similarity to SP:P16921; match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922; transcription antitermination protein NusG 1112063 nusG 3105063 nusG Methylococcus capsulatus str. Bath transcription antitermination protein NusG YP_113536.1 1111530 D 243233 CDS YP_113537.1 53804628 3105062 1112162..1112593 1 NC_002977.6 identified by similarity to SP:P02409; match to protein family HMM PF00298; match to protein family HMM PF03946; match to protein family HMM TIGR01632; 50S ribosomal protein L11 1112593 rplK 3105062 rplK Methylococcus capsulatus str. Bath 50S ribosomal protein L11 YP_113537.1 1112162 D 243233 CDS YP_113538.1 53804627 3103500 1112593..1113288 1 NC_002977.6 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 1113288 rplA 3103500 rplA Methylococcus capsulatus str. Bath 50S ribosomal protein L1 YP_113538.1 1112593 D 243233 CDS YP_113539.1 53804626 3102656 1113506..1114033 1 NC_002977.6 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 1114033 rplJ 3102656 rplJ Methylococcus capsulatus str. Bath 50S ribosomal protein L10 YP_113539.1 1113506 D 243233 CDS YP_113540.1 53804625 3102655 1114073..1114450 1 NC_002977.6 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 1114450 rplL 3102655 rplL Methylococcus capsulatus str. Bath 50S ribosomal protein L7/L12 YP_113540.1 1114073 D 243233 CDS YP_113541.1 53804616 3102147 1114712..1118788 1 NC_002977.6 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 1118788 rpoB 3102147 rpoB Methylococcus capsulatus str. Bath DNA-directed RNA polymerase subunit beta YP_113541.1 1114712 D 243233 CDS YP_113542.1 53804615 3102413 1118854..1123056 1 NC_002977.6 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 1123056 rpoC 3102413 rpoC Methylococcus capsulatus str. Bath DNA-directed RNA polymerase subunit beta' YP_113542.1 1118854 D 243233 CDS YP_113543.1 53804614 3102676 1123222..1123842 1 NC_002977.6 identified by similarity to SP:Q52369; match to protein family HMM PF00034; cytochrome c family protein 1123842 3102676 MCA1068 Methylococcus capsulatus str. Bath cytochrome c family protein YP_113543.1 1123222 D 243233 CDS YP_113544.1 53804613 3102675 1123973..1124542 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00458; match to protein family HMM PF05618; hypothetical protein 1124542 3102675 MCA1069 Methylococcus capsulatus str. Bath hypothetical protein YP_113544.1 1123973 D 243233 CDS YP_113545.1 53804612 3103587 1124569..1126101 1 NC_002977.6 identified by similarity to OMNI:NTL03PA01768; hypothetical protein 1126101 3103587 MCA1070 Methylococcus capsulatus str. Bath hypothetical protein YP_113545.1 1124569 D 243233 CDS YP_113546.1 53804611 3103921 1126125..1127066 1 NC_002977.6 identified by similarity to OMNI:NTL03PA01767; match to protein family HMM TIGR02291; hypothetical protein 1127066 3103921 MCA1071 Methylococcus capsulatus str. Bath hypothetical protein YP_113546.1 1126125 D 243233 CDS YP_113547.1 53804610 3103920 1127390..1128769 1 NC_002977.6 identified by similarity to OMNI:CC0290; match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease 1128769 pstC 3103920 pstC Methylococcus capsulatus str. Bath phosphate ABC transporter permease YP_113547.1 1127390 D 243233 CDS YP_113548.1 53804609 3103965 1128762..1130066 1 NC_002977.6 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease 1130066 pstA 3103965 pstA Methylococcus capsulatus str. Bath phosphate ABC transporter permease YP_113548.1 1128762 D 243233 CDS YP_113549.1 53804601 3104974 1130260..1131003 1 NC_002977.6 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1131003 pstB 3104974 pstB Methylococcus capsulatus str. Bath phosphate transporter ATP-binding protein YP_113549.1 1130260 D 243233 CDS YP_113550.1 53804600 3105094 1131022..1131714 1 NC_002977.6 identified by similarity to SP:P07656; match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system protein PhoU 1131714 phoU1 3105094 phoU1 Methylococcus capsulatus str. Bath phosphate transport system protein PhoU YP_113550.1 1131022 D 243233 CDS YP_113551.1 53804599 3103278 1131896..1132987 1 NC_002977.6 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1132987 3103278 MCA1076 Methylococcus capsulatus str. Bath phospho-2-dehydro-3-deoxyheptonate aldolase YP_113551.1 1131896 D 243233 CDS YP_113552.1 53804598 3103277 1132992..1133972 1 NC_002977.6 fusion of thiS and thiG; functions in thiamine (vitamin B1) biosynthesis; bifunctional sulfur carrier protein/thiazole synthase 1133972 thiG 3103277 thiG Methylococcus capsulatus str. Bath bifunctional sulfur carrier protein/thiazole synthase YP_113552.1 1132992 D 243233 CDS YP_113553.1 53804597 3104825 1136253..1137047 1 NC_002977.6 identified by similarity to SP:O52538; match to protein family HMM PF00194; carbonic anhydrase 1137047 cah 3104825 cah Methylococcus capsulatus str. Bath carbonic anhydrase YP_113553.1 1136253 D 243233 CDS YP_113554.1 53805183 3102861 complement(1136980..1137315) 1 NC_002977.6 identified by similarity to GP:2293232; hypothetical protein 1137315 3102861 MCA1081 Methylococcus capsulatus str. Bath hypothetical protein YP_113554.1 1136980 R 243233 CDS YP_113555.1 53804596 3104540 complement(1137464..1137802) 1 NC_002977.6 hypothetical protein 1137802 3104540 MCA1082 Methylococcus capsulatus str. Bath hypothetical protein YP_113555.1 1137464 R 243233 CDS YP_113556.1 53804595 3104539 1138045..1139916 1 NC_002977.6 hypothetical protein 1139916 3104539 MCA1083 Methylococcus capsulatus str. Bath hypothetical protein YP_113556.1 1138045 D 243233 CDS YP_113557.1 53804594 3104499 complement(1139977..1141410) 1 NC_002977.6 hypothetical protein 1141410 3104499 MCA1084 Methylococcus capsulatus str. Bath hypothetical protein YP_113557.1 1139977 R 243233 CDS YP_113558.1 53804585 3104573 1141372..1142277 1 NC_002977.6 identified by similarity to OMNI:NTL03PA01873; hypothetical protein 1142277 3104573 MCA1085 Methylococcus capsulatus str. Bath hypothetical protein YP_113558.1 1141372 D 243233 CDS YP_113559.1 53804584 3102297 1142288..1142623 1 NC_002977.6 hypothetical protein 1142623 3102297 MCA1086 Methylococcus capsulatus str. Bath hypothetical protein YP_113559.1 1142288 D 243233 CDS YP_113560.1 53804583 3102296 1142625..1143095 1 NC_002977.6 hypothetical protein 1143095 3102296 MCA1087 Methylococcus capsulatus str. Bath hypothetical protein YP_113560.1 1142625 D 243233 CDS YP_113561.1 53804582 3104796 1145041..1146141 1 NC_002977.6 identified by match to protein family HMM PF01609; ISMca1, transposase 1146141 3104796 MCA1090 Methylococcus capsulatus str. Bath ISMca1, transposase YP_113561.1 1145041 D 243233 CDS YP_113562.1 53804581 3102247 1146361..1147038 1 NC_002977.6 hypothetical protein 1147038 3102247 MCA1091 Methylococcus capsulatus str. Bath hypothetical protein YP_113562.1 1146361 D 243233 CDS YP_113563.1 53804580 3104146 complement(1147288..1148493) 1 NC_002977.6 identified by similarity to SP:P46323; match to protein family HMM PF00994; molybdenum cofactor biosynthesis protein 1148493 3104146 MCA1092 Methylococcus capsulatus str. Bath molybdenum cofactor biosynthesis protein YP_113563.1 1147288 R 243233 CDS YP_113564.1 53804579 3104145 complement(1148490..1149431) 1 NC_002977.6 identified by similarity to SP:O27435; match to protein family HMM PF03547; hypothetical protein 1149431 3104145 MCA1093 Methylococcus capsulatus str. Bath hypothetical protein YP_113564.1 1148490 R 243233 CDS YP_113565.1 53804571 3104569 1149587..1150315 1 NC_002977.6 identified by similarity to SP:Q59654; match to protein family HMM PF00215; match to protein family HMM TIGR01740; orotidine 5'-phosphate decarboxylase 1150315 pyrF 3104569 pyrF Methylococcus capsulatus str. Bath orotidine 5'-phosphate decarboxylase YP_113565.1 1149587 D 243233 CDS YP_113566.1 53804570 3104568 1150544..1151104 1 NC_002977.6 identified by similarity to OMNI:NTL03PA01548; hypothetical protein 1151104 3104568 MCA1095 Methylococcus capsulatus str. Bath hypothetical protein YP_113566.1 1150544 D 243233 CDS YP_113567.1 53804569 3102046 1151122..1152063 1 NC_002977.6 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54-dependent transcriptional regulator 1152063 3102046 MCA1096 Methylococcus capsulatus str. Bath sigma-54-dependent transcriptional regulator YP_113567.1 1151122 D 243233 CDS YP_113568.1 53804568 3104463 complement(1152127..1153914) 1 NC_002977.6 identified by match to protein family HMM PF02421; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; match to protein family HMM TIGR00650; ferrous iron transport protein B 1153914 feoB 3104463 feoB Methylococcus capsulatus str. Bath ferrous iron transport protein B YP_113568.1 1152127 R 243233 CDS YP_113569.1 53804567 3104462 complement(1153914..1154156) 1 NC_002977.6 identified by similarity to OMNI:DR1220; match to protein family HMM PF04023; ferrous iron transport protein A 1154156 feoA 3104462 feoA Methylococcus capsulatus str. Bath ferrous iron transport protein A YP_113569.1 1153914 R 243233 CDS YP_113570.1 53804566 3102446 complement(1154290..1155516) 1 NC_002977.6 catalyzes ATP + L-citrulline + L-aspartate = AMP + diphosphate + (N(omega)-L-arginino)succinate; argininosuccinate synthase 1155516 argG 3102446 argG Methylococcus capsulatus str. Bath argininosuccinate synthase YP_113570.1 1154290 R 243233 CDS YP_113571.1 53804565 3103940 1155898..1157328 1 NC_002977.6 identified by match to protein family HMM PF00394; multicopper oxidase 1157328 3103940 MCA1101 Methylococcus capsulatus str. Bath multicopper oxidase YP_113571.1 1155898 D 243233 CDS YP_113572.1 53804564 3103939 complement(1157365..1158564) 1 NC_002977.6 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator 1158564 3103939 MCA1102 Methylococcus capsulatus str. Bath sigma-54 dependent transcriptional regulator YP_113572.1 1157365 R 243233 CDS YP_113573.1 53804556 3103442 1158847..1159566 1 NC_002977.6 identified by match to protein family HMM PF00753; metallo-beta-lactamase 1159566 3103442 MCA1103 Methylococcus capsulatus str. Bath metallo-beta-lactamase YP_113573.1 1158847 D 243233 CDS YP_113574.1 53804555 3103441 1159563..1160468 1 NC_002977.6 identified by similarity to GP:17133040; match to protein family HMM PF01925; hypothetical protein 1160468 3103441 MCA1104 Methylococcus capsulatus str. Bath hypothetical protein YP_113574.1 1159563 D 243233 CDS YP_113575.1 53804554 3104501 1160863..1162440 1 NC_002977.6 identified by similarity to SP:Q09049; match to protein family HMM PF01654; cytochrome d ubiquinol oxidase subunit I 1162440 cydA 3104501 cydA Methylococcus capsulatus str. Bath cytochrome d ubiquinol oxidase subunit I YP_113575.1 1160863 D 243233 CDS YP_113576.1 53804553 3104832 1162460..1163596 1 NC_002977.6 identified by similarity to SP:P11027; match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome d ubiquinol oxidase subunit II 1163596 cydB 3104832 cydB Methylococcus capsulatus str. Bath cytochrome d ubiquinol oxidase subunit II YP_113576.1 1162460 D 243233 CDS YP_113577.1 53804552 3104831 1163628..1163750 1 NC_002977.6 identified by match to protein family HMM TIGR02106; cyd operon protein YbgT 1163750 ybgT 3104831 ybgT Methylococcus capsulatus str. Bath cyd operon protein YbgT YP_113577.1 1163628 D 243233 CDS YP_113578.1 53804551 3104621 1163835..1164110 1 NC_002977.6 identified by similarity to OMNI:NTL03PA02658; hypothetical protein 1164110 3104621 MCA1108 Methylococcus capsulatus str. Bath hypothetical protein YP_113578.1 1163835 D 243233 CDS YP_113579.1 53804550 3104809 1164359..1164784 1 NC_002977.6 identified by match to protein family HMM PF03171; 2OG-Fe(II) oxygenase 1164784 3104809 MCA1109 Methylococcus capsulatus str. Bath 2OG-Fe(II) oxygenase YP_113579.1 1164359 D 243233 CDS YP_113580.1 53804541 3103343 complement(1164796..1166376) 1 NC_002977.6 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D 1166376 mdoD 3103343 mdoD Methylococcus capsulatus str. Bath glucan biosynthesis protein D YP_113580.1 1164796 R 243233 CDS YP_113581.1 53804540 3103342 complement(1166486..1167280) 1 NC_002977.6 identified by similarity to GP:17429447; match to protein family HMM PF01925; hypothetical protein 1167280 3103342 MCA1111 Methylococcus capsulatus str. Bath hypothetical protein YP_113581.1 1166486 R 243233 CDS YP_113582.1 53804539 3104596 1167489..1168169 1 NC_002977.6 hypothetical protein 1168169 3104596 MCA1112 Methylococcus capsulatus str. Bath hypothetical protein YP_113582.1 1167489 D 243233 CDS YP_113583.1 53804538 3103953 complement(1168166..1169239) 1 NC_002977.6 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1169239 hisC-1 3103953 hisC-1 Methylococcus capsulatus str. Bath histidinol-phosphate aminotransferase YP_113583.1 1168166 R 243233 CDS YP_113584.1 53804537 3103952 1169534..1171291 1 NC_002977.6 identified by similarity to SP:P31742; match to protein family HMM PF00437; match to protein family HMM PF05157; general secretion pathway protein E 1171291 xpsE 3103952 xpsE Methylococcus capsulatus str. Bath general secretion pathway protein E YP_113584.1 1169534 D 243233 CDS YP_113585.1 53804536 3104857 1171467..1172561 1 NC_002977.6 identified by similarity to SP:P31744; match to protein family HMM PF00482; general secretion pathway protein F 1172561 xpsF 3104857 xpsF Methylococcus capsulatus str. Bath general secretion pathway protein F YP_113585.1 1171467 D 243233 CDS YP_113586.1 53804535 3104646 1172598..1173029 1 NC_002977.6 identified by similarity to SP:Q00514; match to protein family HMM TIGR01710; general secretion pathway protein G 1173029 gspG 3104646 gspG Methylococcus capsulatus str. Bath general secretion pathway protein G YP_113586.1 1172598 D 243233 CDS YP_113587.1 53804534 3104645 1173073..1173498 1 NC_002977.6 identified by similarity to SP:P31736; general secretion pathway protein H 1173498 xpsH 3104645 xpsH Methylococcus capsulatus str. Bath general secretion pathway protein H YP_113587.1 1173073 D 243233 CDS YP_113588.1 53804519 3104766 1173554..1173973 1 NC_002977.6 identified by similarity to SP:P31738; general secretion protein I 1173973 xpsI 3104766 xpsI Methylococcus capsulatus str. Bath general secretion protein I YP_113588.1 1173554 D 243233 CDS YP_113589.1 53804518 3104727 1173976..1174578 1 NC_002977.6 identified by similarity to SP:P31740; general secretory pathway protein J 1174578 xpsJ 3104727 xpsJ Methylococcus capsulatus str. Bath general secretory pathway protein J YP_113589.1 1173976 D 243233 CDS YP_113590.1 53804517 3103960 1174815..1175753 1 NC_002977.6 general secretion pathway protein K 1175753 3103960 MCA1120 Methylococcus capsulatus str. Bath general secretion pathway protein K YP_113590.1 1174815 D 243233 CDS YP_113591.1 53804516 3103959 1175785..1176903 1 NC_002977.6 identified by similarity to SP:P34027; match to protein family HMM PF05137; general secretion protein I 1176903 3103959 MCA1121 Methylococcus capsulatus str. Bath general secretion protein I YP_113591.1 1175785 D 243233 CDS YP_113592.1 53804515 3104782 1176854..1177465 1 NC_002977.6 identified by similarity to GP:496290; general secretion pathway protein 1177465 3104782 MCA1122 Methylococcus capsulatus str. Bath general secretion pathway protein YP_113592.1 1176854 D 243233 CDS YP_113593.1 53804514 3102943 1178358..1180613 1 NC_002977.6 identified by similarity to SP:P45758; match to protein family HMM PF00263; match to protein family HMM PF03958; general secretion pathway protein D 1180613 gspD 3102943 gspD Methylococcus capsulatus str. Bath general secretion pathway protein D YP_113593.1 1178358 D 243233 CDS YP_113594.1 53804513 3102942 complement(1180635..1181336) 1 NC_002977.6 identified by similarity to SP:P31773; competence protein F 1181336 comF 3102942 comF Methylococcus capsulatus str. Bath competence protein F YP_113594.1 1180635 R 243233 CDS YP_113595.1 53804505 3103623 1181717..1182718 1 NC_002977.6 identified by similarity to SP:P12996; match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433; biotin synthetase 1182718 bioB 3103623 bioB Methylococcus capsulatus str. Bath biotin synthetase YP_113595.1 1181717 D 243233 CDS YP_113596.1 53804504 3104623 1182724..1183887 1 NC_002977.6 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 1183887 bioF 3104623 bioF Methylococcus capsulatus str. Bath 8-amino-7-oxononanoate synthase YP_113596.1 1182724 D 243233 CDS YP_113597.1 53804503 3104622 1183888..1184652 1 NC_002977.6 identified by similarity to SP:P13001; match to protein family HMM PF00561; match to protein family HMM TIGR01738; BioH protein 1184652 3104622 MCA1127 Methylococcus capsulatus str. Bath BioH protein YP_113597.1 1183888 D 243233 CDS YP_113598.1 53804502 3102671 1184630..1185457 1 NC_002977.6 identified by similarity to SP:O06898; match to protein family HMM TIGR02072; biotin synthesis protein BioC 1185457 bioC 3102671 bioC Methylococcus capsulatus str. Bath biotin synthesis protein BioC YP_113598.1 1184630 D 243233 CDS YP_113599.1 53804501 3102109 1185467..1186153 1 NC_002977.6 identified by similarity to SP:P13000; match to protein family HMM PF01656; match to protein family HMM TIGR00347; dethiobiotin synthetase 1186153 bioD 3102109 bioD Methylococcus capsulatus str. Bath dethiobiotin synthetase YP_113599.1 1185467 D 243233 CDS YP_113600.1 53804500 3102108 1186649..1188007 1 NC_002977.6 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; metallo-beta-lactamase 1188007 3102108 MCA1130 Methylococcus capsulatus str. Bath metallo-beta-lactamase YP_113600.1 1186649 D 243233 CDS YP_113601.1 53804788 3103493 complement(1188013..1188780) 1 NC_002977.6 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; hypothetical protein 1188780 3103493 MCA1131 Methylococcus capsulatus str. Bath hypothetical protein YP_113601.1 1188013 R 243233 CDS YP_113602.1 53804787 3103873 1188873..1190369 1 NC_002977.6 identified by similarity to GP:17131502; hypothetical protein 1190369 3103873 MCA1132 Methylococcus capsulatus str. Bath hypothetical protein YP_113602.1 1188873 D 243233 CDS YP_113603.1 53804786 3103872 complement(1190416..1191633) 1 NC_002977.6 identified by similarity to SP:P24235; match to protein family HMM PF00953; undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase 1191633 3103872 MCA1133 Methylococcus capsulatus str. Bath undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase YP_113603.1 1190416 R 243233 CDS YP_113604.1 53804785 3102151 complement(1191745..1192539) 1 NC_002977.6 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01458; match to protein family HMM TIGR01460; HAD superfamily hydrolase 1192539 3102151 MCA1134 Methylococcus capsulatus str. Bath HAD superfamily hydrolase YP_113604.1 1191745 R 243233 CDS YP_113605.1 53804776 3103460 complement(1192526..1192846) 1 NC_002977.6 hypothetical protein 1192846 3103460 MCA1135 Methylococcus capsulatus str. Bath hypothetical protein YP_113605.1 1192526 R 243233 CDS YP_113606.1 53804775 3103191 1192914..1193201 1 NC_002977.6 hypothetical protein 1193201 3103191 MCA1136 Methylococcus capsulatus str. Bath hypothetical protein YP_113606.1 1192914 D 243233 CDS YP_113607.1 53804774 3103190 complement(1193214..1193723) 1 NC_002977.6 identified by similarity to GP:19918502; match to protein family HMM PF01058; hydrogenase subunit 1193723 3103190 MCA1137 Methylococcus capsulatus str. Bath hydrogenase subunit YP_113607.1 1193214 R 243233 CDS YP_113608.1 53804773 3103124 complement(1193735..1195318) 1 NC_002977.6 identified by similarity to SP:P77329; match to protein family HMM PF00329; match to protein family HMM PF00346; hydrogenase subunit 1195318 3103124 MCA1138 Methylococcus capsulatus str. Bath hydrogenase subunit YP_113608.1 1193735 R 243233 CDS YP_113609.1 53804772 3104658 complement(1195354..1196820) 1 NC_002977.6 Catalyzes the transfer of electrons from NADH to ubiquinone; hydrogenase 4 subunit F 1196820 3104658 MCA1139 Methylococcus capsulatus str. Bath hydrogenase 4 subunit F YP_113609.1 1195354 R 243233 CDS YP_113610.1 53804771 3104657 complement(1196817..1197494) 1 NC_002977.6 identified by similarity to SP:P77524; hydrogenase subunit 1197494 3104657 MCA1140 Methylococcus capsulatus str. Bath hydrogenase subunit YP_113610.1 1196817 R 243233 CDS YP_113611.1 53804770 3102497 complement(1197500..1198438) 1 NC_002977.6 identified by similarity to GP:12744950; match to protein family HMM PF00146; hydrogenase subunit 1198438 3102497 MCA1141 Methylococcus capsulatus str. Bath hydrogenase subunit YP_113611.1 1197500 R 243233 CDS YP_113612.1 53804769 3102538 complement(1198438..1200684) 1 NC_002977.6 Catalyzes the transfer of electrons from NADH to ubiquinone; hydrogenase 4 subunit B 1200684 3102538 MCA1142 Methylococcus capsulatus str. Bath hydrogenase 4 subunit B YP_113612.1 1198438 R 243233 CDS YP_113613.1 53804768 3102537 1200790..1201359 1 NC_002977.6 identified by similarity to GP:17132082; match to protein family HMM PF05685; hypothetical protein 1201359 3102537 MCA1143 Methylococcus capsulatus str. Bath hypothetical protein YP_113613.1 1200790 D 243233 CDS YP_113614.1 53804760 3102836 1201356..1201823 1 NC_002977.6 hypothetical protein 1201823 3102836 MCA1144 Methylococcus capsulatus str. Bath hypothetical protein YP_113614.1 1201356 D 243233 CDS YP_113615.1 53804759 3102648 1202007..1202387 1 NC_002977.6 identified by similarity to SP:O59256; hypothetical protein 1202387 3102648 MCA1145 Methylococcus capsulatus str. Bath hypothetical protein YP_113615.1 1202007 D 243233 CDS YP_113616.1 53804758 3102647 1202384..1203502 1 NC_002977.6 identified by similarity to SP:P32054; match to protein family HMM TIGR01472; GDP-mannose 4,6-dehydratase 1203502 gmd 3102647 gmd Methylococcus capsulatus str. Bath GDP-mannose 4,6-dehydratase YP_113616.1 1202384 D 243233 CDS YP_113617.1 53804757 3103665 1203509..1204477 1 NC_002977.6 identified by similarity to SP:P32055; GDP-L-fucose synthetase 1204477 fcl 3103665 fcl Methylococcus capsulatus str. Bath GDP-L-fucose synthetase YP_113617.1 1203509 D 243233 CDS YP_113618.1 53804756 3102569 1204961..1205455 1 NC_002977.6 hypothetical protein 1205455 3102569 MCA1149 Methylococcus capsulatus str. Bath hypothetical protein YP_113618.1 1204961 D 243233 CDS YP_113619.1 53804755 3102568 1205627..1207042 1 NC_002977.6 hypothetical protein 1207042 3102568 MCA1150 Methylococcus capsulatus str. Bath hypothetical protein YP_113619.1 1205627 D 243233 CDS YP_113620.1 53804754 3105051 1207046..1207705 1 NC_002977.6 hypothetical protein 1207705 3105051 MCA1151 Methylococcus capsulatus str. Bath hypothetical protein YP_113620.1 1207046 D 243233 CDS YP_113621.1 53805181 3103440 1207794..1208579 1 NC_002977.6 identified by similarity to GP:14028308; match to protein family HMM TIGR01444; hypothetical protein 1208579 3103440 MCA1152 Methylococcus capsulatus str. Bath hypothetical protein YP_113621.1 1207794 D 243233 CDS YP_113622.1 53804753 3103297 1208576..1209706 1 NC_002977.6 identified by match to protein family HMM PF00534; glycosyl transferase family protein 1209706 3103297 MCA1153 Methylococcus capsulatus str. Bath glycosyl transferase family protein YP_113622.1 1208576 D 243233 CDS YP_113623.1 53804745 3103157 1209724..1210431 1 NC_002977.6 hypothetical protein 1210431 3103157 MCA1154 Methylococcus capsulatus str. Bath hypothetical protein YP_113623.1 1209724 D 243233 CDS YP_113624.1 53804744 3104811 1210461..1211366 1 NC_002977.6 identified by match to protein family HMM TIGR01444; FkbM family methyltransferase 1211366 3104811 MCA1155 Methylococcus capsulatus str. Bath FkbM family methyltransferase YP_113624.1 1210461 D 243233 CDS YP_113625.1 53804743 3104810 1211354..1212868 1 NC_002977.6 hypothetical protein 1212868 3104810 MCA1156 Methylococcus capsulatus str. Bath hypothetical protein YP_113625.1 1211354 D 243233 CDS YP_113626.1 53804742 3102106 1212897..1213658 1 NC_002977.6 identified by match to protein family HMM TIGR01444; FkbM family methyltransferase 1213658 3102106 MCA1157 Methylococcus capsulatus str. Bath FkbM family methyltransferase YP_113626.1 1212897 D 243233 CDS YP_113627.1 53804741 3102536 1213675..1214529 1 NC_002977.6 identified by match to protein family HMM PF00535; glycosyl transferase family protein 1214529 3102536 MCA1158 Methylococcus capsulatus str. Bath glycosyl transferase family protein YP_113627.1 1213675 D 243233 CDS YP_113628.1 53804740 3102535 1214533..1215573 1 NC_002977.6 identified by match to protein family HMM PF00534; glycosyl transferase family protein 1215573 3102535 MCA1159 Methylococcus capsulatus str. Bath glycosyl transferase family protein YP_113628.1 1214533 D 243233 CDS YP_113629.1 53804739 3102826 1215582..1216733 1 NC_002977.6 identified by match to protein family HMM PF00534; glycosyl transferase family protein 1216733 3102826 MCA1160 Methylococcus capsulatus str. Bath glycosyl transferase family protein YP_113629.1 1215582 D 243233 CDS YP_113630.1 53804738 3102102 1217070..1218281 1 NC_002977.6 hypothetical protein 1218281 3102102 MCA1161 Methylococcus capsulatus str. Bath hypothetical protein YP_113630.1 1217070 D 243233 CDS YP_113631.1 53804730 3103888 1218278..1219741 1 NC_002977.6 identified by similarity to GP:1245347; match to protein family HMM PF03062; alginate O-acetyltransferase 1219741 3103888 MCA1162 Methylococcus capsulatus str. Bath alginate O-acetyltransferase YP_113631.1 1218278 D 243233 CDS YP_113632.1 53804729 3102682 1219794..1221548 1 NC_002977.6 identified by similarity to SP:P55474; match to protein family HMM PF02543; nodulation protein nolNO 1221548 3102682 MCA1163 Methylococcus capsulatus str. Bath nodulation protein nolNO YP_113632.1 1219794 D 243233 CDS YP_113633.1 53804728 3104236 1221559..1222011 1 NC_002977.6 methyltransferase domain-containing protein 1222011 3104236 MCA1164 Methylococcus capsulatus str. Bath methyltransferase domain-containing protein YP_113633.1 1221559 D 243233 CDS YP_113634.1 53804727 3104235 1222207..1223169 1 NC_002977.6 identified by match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase 1223169 3104235 MCA1165 Methylococcus capsulatus str. Bath NAD-dependent epimerase/dehydratase YP_113634.1 1222207 D 243233 CDS YP_113635.1 53804726 3104683 1223169..1224062 1 NC_002977.6 identified by similarity to GP:17132272; match to protein family HMM PF00535; glycosyl transferase group 2 family protein 1224062 3104683 MCA1166 Methylococcus capsulatus str. Bath glycosyl transferase group 2 family protein YP_113635.1 1223169 D 243233 CDS YP_113636.1 53804725 3104174 1224479..1225693 1 NC_002977.6 identified by similarity to SP:P32057; match to protein family HMM PF00534; colanic acid biosynthesis glycosyl transferase 1225693 3104174 MCA1168 Methylococcus capsulatus str. Bath colanic acid biosynthesis glycosyl transferase YP_113636.1 1224479 D 243233 CDS YP_113637.1 53804724 3104173 1226496..1226954 1 NC_002977.6 hypothetical protein 1226954 3104173 MCA1171 Methylococcus capsulatus str. Bath hypothetical protein YP_113637.1 1226496 D 243233 CDS YP_113638.1 53804723 3104494 complement(1226932..1227111) 1 NC_002977.6 hypothetical protein 1227111 3104494 MCA1172 Methylococcus capsulatus str. Bath hypothetical protein YP_113638.1 1226932 R 243233 CDS YP_113639.1 53804713 3103013 1227095..1228468 1 NC_002977.6 identified by similarity to OMNI:VC0931; match to protein family HMM PF04932; hypothetical protein 1228468 3103013 MCA1173 Methylococcus capsulatus str. Bath hypothetical protein YP_113639.1 1227095 D 243233 CDS YP_113640.1 53804712 3103012 1228559..1229992 1 NC_002977.6 identified by similarity to OMNI:VC0935; hypothetical protein 1229992 3103012 MCA1174 Methylococcus capsulatus str. Bath hypothetical protein YP_113640.1 1228559 D 243233 CDS YP_113641.1 53804711 3102418 1230177..1230635 1 NC_002977.6 identified by match to protein family HMM PF02563; polysaccharide biosynthesis/export protein 1230635 3102418 MCA1175 Methylococcus capsulatus str. Bath polysaccharide biosynthesis/export protein YP_113641.1 1230177 D 243233 CDS YP_113642.1 53804710 3105009 1230671..1231624 1 NC_002977.6 This gene is interrupted by an IS element.identified by similarity to OMNI:NTL01SS00315; match to protein family HMM PF02706; exopolysaccharide export protein , interruption-N 1231624 3105009 MCA1176 Methylococcus capsulatus str. Bath exopolysaccharide export protein , interruption-N YP_113642.1 1230671 D 243233 CDS YP_113643.1 53804708 3102251 complement(1231615..1232715) 1 NC_002977.6 identified by match to protein family HMM PF01609; ISMca1, transposase 1232715 3102251 MCA1177 Methylococcus capsulatus str. Bath ISMca1, transposase YP_113643.1 1231615 R 243233 CDS YP_113644.1 53804709 3105008 1232830..1234413 1 NC_002977.6 This gene is interrupted by an IS element.identified by similarity to SP:Q45409; exopolysaccharide export protein , interruption-C 1234413 3105008 MCA1178 Methylococcus capsulatus str. Bath exopolysaccharide export protein , interruption-C YP_113644.1 1232830 D 243233 CDS YP_113645.1 53804707 3104526 1234480..1235205 1 NC_002977.6 identified by similarity to GP:12006001; capsular polysaccharide biosynthesis protein 1235205 3104526 MCA1179 Methylococcus capsulatus str. Bath capsular polysaccharide biosynthesis protein YP_113645.1 1234480 D 243233 CDS YP_113646.1 53804706 3104525 complement(1235941..1236987) 1 NC_002977.6 identified by similarity to SP:P14788; match to protein family HMM PF00005; match to protein family HMM TIGR00968; sulfate ABC transporter ATP-binding protein 1236987 cysA 3104525 cysA Methylococcus capsulatus str. Bath sulfate ABC transporter ATP-binding protein YP_113646.1 1235941 R 243233 CDS YP_113647.1 53804705 3102575 complement(1237006..1237893) 1 NC_002977.6 identified by similarity to SP:P16702; match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140; sulfate ABC transporter permease 1237893 cysW 3102575 cysW Methylococcus capsulatus str. Bath sulfate ABC transporter permease YP_113647.1 1237006 R 243233 CDS YP_113648.1 53804704 3103196 complement(1237920..1238756) 1 NC_002977.6 identified by similarity to SP:P16701; match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139; sulfate ABC transporter permease 1238756 cysT 3103196 cysT Methylococcus capsulatus str. Bath sulfate ABC transporter permease YP_113648.1 1237920 R 243233 CDS YP_113649.1 53804703 3103195 1239209..1240606 1 NC_002977.6 identified by similarity to GP:9478255; hypothetical protein 1240606 3103195 MCA1184 Methylococcus capsulatus str. Bath hypothetical protein YP_113649.1 1239209 D 243233 CDS YP_113650.1 53804702 3103151 complement(1240773..1241417) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA02482; match to protein family HMM PF00034; cytochrome c family protein 1241417 3103151 MCA1185 Methylococcus capsulatus str. Bath cytochrome c family protein YP_113650.1 1240773 R 243233 CDS YP_113651.1 53804701 3104965 complement(1241427..1242632) 1 NC_002977.6 hypothetical protein 1242632 3104965 MCA1186 Methylococcus capsulatus str. Bath hypothetical protein YP_113651.1 1241427 R 243233 CDS YP_113652.1 53804691 3104074 complement(1242646..1244013) 1 NC_002977.6 identified by match to protein family HMM PF00034; cytochrome c family protein 1244013 3104074 MCA1187 Methylococcus capsulatus str. Bath cytochrome c family protein YP_113652.1 1242646 R 243233 CDS YP_113653.1 53804690 3102560 1244380..1246311 1 NC_002977.6 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 1246311 hppA 3102560 hppA Methylococcus capsulatus str. Bath membrane-bound proton-translocating pyrophosphatase YP_113653.1 1244380 D 243233 CDS YP_113654.1 53804689 3103360 1246343..1247098 1 NC_002977.6 identified by similarity to GP:13620194; hypothetical protein 1247098 3103360 MCA1189 Methylococcus capsulatus str. Bath hypothetical protein YP_113654.1 1246343 D 243233 CDS YP_113655.1 53804688 3103359 1247103..1248005 1 NC_002977.6 hypothetical protein 1248005 3103359 MCA1190 Methylococcus capsulatus str. Bath hypothetical protein YP_113655.1 1247103 D 243233 CDS YP_113656.1 53804687 3103150 1247984..1248646 1 NC_002977.6 identified by match to protein family HMM PF02630; SCO1/SenC family protein 1248646 3103150 MCA1191 Methylococcus capsulatus str. Bath SCO1/SenC family protein YP_113656.1 1247984 D 243233 CDS YP_113657.1 53804686 3102792 1248643..1249068 1 NC_002977.6 identified by similarity to OMNI:DR1885; hypothetical protein 1249068 3102792 MCA1192 Methylococcus capsulatus str. Bath hypothetical protein YP_113657.1 1248643 D 243233 CDS YP_113658.1 53804685 3102791 complement(1249598..1251442) 1 NC_002977.6 identified by similarity to SP:P40983; hypothetical protein 1251442 3102791 MCA1193 Methylococcus capsulatus str. Bath hypothetical protein YP_113658.1 1249598 R 243233 CDS YP_113659.1 53804684 3104807 1252141..1253724 1 NC_002977.6 identified by similarity to SP:P22869; match to protein family HMM PF02332; methane monooxygenase subunit A, alpha chain 1253724 mmoX 3104807 mmoX Methylococcus capsulatus str. Bath methane monooxygenase subunit A, alpha chain YP_113659.1 1252141 D 243233 CDS YP_113660.1 53804675 3103426 1253805..1254974 1 NC_002977.6 identified by similarity to SP:P18798; match to protein family HMM PF02332; methane monooxygenase subunit A, beta chain 1254974 mmoY 3103426 mmoY Methylococcus capsulatus str. Bath methane monooxygenase subunit A, beta chain YP_113660.1 1253805 D 243233 CDS YP_113661.1 53804674 3103283 1254991..1255416 1 NC_002977.6 identified by similarity to SP:P18797; match to protein family HMM PF02406; methane monooxygenase subunit B 1255416 mmoB 3103283 mmoB Methylococcus capsulatus str. Bath methane monooxygenase subunit B YP_113661.1 1254991 D 243233 CDS YP_113662.1 53804673 3103282 1255502..1256602 1 NC_002977.6 identified by match to protein family HMM PF01609; ISMca1, transposase 1256602 3103282 MCA1197 Methylococcus capsulatus str. Bath ISMca1, transposase YP_113662.1 1255502 D 243233 CDS YP_113663.1 53804672 3102570 1256767..1257279 1 NC_002977.6 identified by similarity to SP:P11987; match to protein family HMM PF02964; methane monooxygenase subunit A, gamma chain 1257279 mmoZ 3102570 mmoZ Methylococcus capsulatus str. Bath methane monooxygenase subunit A, gamma chain YP_113663.1 1256767 D 243233 CDS YP_113664.1 53804671 3103264 1257434..1257745 1 NC_002977.6 methane monooxygenase, D subunit 1257745 mmoD 3103264 mmoD Methylococcus capsulatus str. Bath methane monooxygenase, D subunit YP_113664.1 1257434 D 243233 CDS YP_113665.1 53804670 3103263 1257758..1258804 1 NC_002977.6 identified by similarity to SP:P22868; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; methane monooxygenase subunit C 1258804 mmoC 3103263 mmoC Methylococcus capsulatus str. Bath methane monooxygenase subunit C YP_113665.1 1257758 D 243233 CDS YP_113666.1 53804669 3104812 1258819..1259139 1 NC_002977.6 hypothetical protein 1259139 3104812 MCA1201 Methylococcus capsulatus str. Bath hypothetical protein YP_113666.1 1258819 D 243233 CDS YP_113667.1 53804661 3102984 1259157..1260836 1 NC_002977.6 identified by similarity to SP:P45746; match to protein family HMM PF00118; chaperonin, 60 kDa subunit 1260836 groEL-2 3102984 groEL-2 Methylococcus capsulatus str. Bath chaperonin, 60 kDa subunit YP_113667.1 1259157 D 243233 CDS YP_113668.1 53804660 3102714 complement(1260869..1262773) 1 NC_002977.6 identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254; response regulator 1262773 3102714 MCA1203 Methylococcus capsulatus str. Bath response regulator YP_113668.1 1260869 R 243233 CDS YP_113669.1 53804659 3102090 complement(1262770..1266303) 1 NC_002977.6 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator 1266303 3102090 MCA1204 Methylococcus capsulatus str. Bath sensory box histidine kinase/response regulator YP_113669.1 1262770 R 243233 CDS YP_113670.1 53804658 3102089 1266748..1268493 1 NC_002977.6 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator 1268493 3102089 MCA1205 Methylococcus capsulatus str. Bath sigma-54 dependent transcriptional regulator YP_113670.1 1266748 D 243233 CDS YP_113671.1 53804657 3103664 complement(1269203..1269514) 1 NC_002977.6 identified by similarity to SP:P36768; match to protein family HMM PF06865; hypothetical protein 1269514 3103664 MCA1207 Methylococcus capsulatus str. Bath hypothetical protein YP_113671.1 1269203 R 243233 CDS YP_113672.1 53804656 3104649 complement(1269579..1270214) 1 NC_002977.6 identified by similarity to SP:P32174; match to protein family HMM TIGR01583; formate dehydrogenase subunit gamma 1270214 3104649 MCA1208 Methylococcus capsulatus str. Bath formate dehydrogenase subunit gamma YP_113672.1 1269579 R 243233 CDS YP_113673.1 53804655 3104648 complement(1270211..1271083) 1 NC_002977.6 identified by similarity to SP:P32175; match to protein family HMM PF00037; match to protein family HMM TIGR01582; formate dehydrogenase, iron-sulfur subunit 1271083 3104648 MCA1209 Methylococcus capsulatus str. Bath formate dehydrogenase, iron-sulfur subunit YP_113673.1 1270211 R 243233 CDS YP_113674.1 53804499 3103144 complement(1271086..1274286) 1 NC_002977.6 identified by similarity to SP:P32176; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR01553; formate dehydrogenase subunit alpha 1274286 3103144 MCA1210 Methylococcus capsulatus str. Bath formate dehydrogenase subunit alpha YP_113674.1 1271086 R 243233 CDS YP_113675.1 53804498 3102813 1274479..1275138 1 NC_002977.6 identified by similarity to SP:P24206; match to protein family HMM PF01135; match to protein family HMM TIGR00080; protein-L-isoaspartate O-methyltransferase 1275138 pcm-1 3102813 pcm-1 Methylococcus capsulatus str. Bath protein-L-isoaspartate O-methyltransferase YP_113675.1 1274479 D 243233 CDS YP_113676.1 53804489 3102796 1275140..1276225 1 NC_002977.6 catalyzes the conversion of terminal3'-phosphate of RNA to the 2',3'-cyclicphosphodiester; RNA 3'-terminal-phosphate cyclase 1276225 3102796 MCA1212 Methylococcus capsulatus str. Bath RNA 3'-terminal-phosphate cyclase YP_113676.1 1275140 D 243233 CDS YP_113677.1 53804488 3102795 1276212..1277936 1 NC_002977.6 identified by similarity to GP:19914532; match to protein family HMM PF00633; match to protein family HMM PF02231; match to protein family HMM PF02811; hypothetical protein 1277936 3102795 MCA1213 Methylococcus capsulatus str. Bath hypothetical protein YP_113677.1 1276212 D 243233 CDS YP_113678.1 53804487 3104674 1278054..1279883 1 NC_002977.6 identified by similarity to OMNI:NMB0264; match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 1279883 3104674 MCA1214 Methylococcus capsulatus str. Bath ABC transporter ATP-binding protein/permease YP_113678.1 1278054 D 243233 CDS YP_113679.1 53804486 3104355 1280209..1280481 1 NC_002977.6 hypothetical protein 1280481 3104355 MCA1215 Methylococcus capsulatus str. Bath hypothetical protein YP_113679.1 1280209 D 243233 CDS YP_113680.1 53804485 3104354 1280734..1281258 1 NC_002977.6 hypothetical protein 1281258 3104354 MCA1216 Methylococcus capsulatus str. Bath hypothetical protein YP_113680.1 1280734 D 243233 CDS YP_113681.1 53804484 3102114 1281500..1284019 1 NC_002977.6 identified by match to protein family HMM PF07504; metalloprotease 1284019 3102114 MCA1217 Methylococcus capsulatus str. Bath metalloprotease YP_113681.1 1281500 D 243233 CDS YP_113683.1 53804473 3103400 complement(1284430..1285665) 1 NC_002977.6 identified by match to protein family HMM PF00872; ISMca5, transposase 1285665 3103400 MCA1219 Methylococcus capsulatus str. Bath ISMca5, transposase YP_113683.1 1284430 R 243233 CDS YP_113684.1 53804482 3104302 1286056..1286802 1 NC_002977.6 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 1286802 3104302 MCA1220 Methylococcus capsulatus str. Bath hypothetical protein YP_113684.1 1286056 D 243233 CDS YP_113685.1 53804472 3104777 1286812..1287309 1 NC_002977.6 identified by similarity to SP:P24239; match to protein family HMM PF02075; match to protein family HMM TIGR00228; crossover junction endodeoxyribonuclease RuvC 1287309 ruvC 3104777 ruvC Methylococcus capsulatus str. Bath crossover junction endodeoxyribonuclease RuvC YP_113685.1 1286812 D 243233 CDS YP_113686.1 53804471 3102545 1287306..1287911 1 NC_002977.6 identified by similarity to SP:P08576; match to protein family HMM PF01330; match to protein family HMM PF07499; match to protein family HMM TIGR00084; Holliday junction DNA helicase RuvA 1287911 ruvA 3102545 ruvA Methylococcus capsulatus str. Bath Holliday junction DNA helicase RuvA YP_113686.1 1287306 D 243233 CDS YP_113687.1 53804470 3102544 1287923..1288960 1 NC_002977.6 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1288960 ruvB 3102544 ruvB Methylococcus capsulatus str. Bath Holliday junction DNA helicase RuvB YP_113687.1 1287923 D 243233 CDS YP_113688.1 53804469 3103326 1288929..1289360 1 NC_002977.6 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; thioesterase 1289360 3103326 MCA1224 Methylococcus capsulatus str. Bath thioesterase YP_113688.1 1288929 D 243233 CDS YP_113689.1 53804468 3102366 complement(1290091..1292472) 1 NC_002977.6 hypothetical protein 1292472 3102366 MCA1225 Methylococcus capsulatus str. Bath hypothetical protein YP_113689.1 1290091 R 243233 CDS YP_113690.1 53804467 3102365 1292731..1293408 1 NC_002977.6 identified by similarity to SP:P05828; match to protein family HMM PF01618; tolQ protein 1293408 tolQ 3102365 tolQ Methylococcus capsulatus str. Bath tolQ protein YP_113690.1 1292731 D 243233 CDS YP_113691.1 53804466 3104753 1293405..1293845 1 NC_002977.6 identified by similarity to SP:P50599; match to protein family HMM PF02472; tolR protein 1293845 tolR 3104753 tolR Methylococcus capsulatus str. Bath tolR protein YP_113691.1 1293405 D 243233 CDS YP_113692.1 53804449 3104910 1293845..1295248 1 NC_002977.6 identified by similarity to SP:P50600; match to protein family HMM PF06519; match to protein family HMM TIGR01352; TolA protein 1295248 3104910 MCA1228 Methylococcus capsulatus str. Bath TolA protein YP_113692.1 1293845 D 243233 CDS YP_113693.1 53804448 3103943 1295268..1296542 1 NC_002977.6 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1296542 tolB 3103943 tolB Methylococcus capsulatus str. Bath translocation protein TolB YP_113693.1 1295268 D 243233 CDS YP_113694.1 53804447 3102774 1296548..1297195 1 NC_002977.6 identified by match to protein family HMM PF00691; OmpA family protein 1297195 3102774 MCA1230 Methylococcus capsulatus str. Bath OmpA family protein YP_113694.1 1296548 D 243233 CDS YP_113695.1 53804446 3102773 1297200..1298057 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00975; hypothetical protein 1298057 3102773 MCA1231 Methylococcus capsulatus str. Bath hypothetical protein YP_113695.1 1297200 D 243233 CDS YP_113696.1 53804445 3104440 1298063..1298710 1 NC_002977.6 identified by match to protein family HMM PF04055; radical activating enzyme family protein 1298710 3104440 MCA1232 Methylococcus capsulatus str. Bath radical activating enzyme family protein YP_113696.1 1298063 D 243233 CDS YP_113697.1 53804444 3104169 1298710..1299381 1 NC_002977.6 identified by similarity to GP:5514781; match to protein family HMM PF06508; match to protein family HMM TIGR00364; exoenzyme S synthesis protein B 1299381 3104169 MCA1233 Methylococcus capsulatus str. Bath exoenzyme S synthesis protein B YP_113697.1 1298710 D 243233 CDS YP_113698.1 53804443 3104168 1299444..1300850 1 NC_002977.6 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1300850 gltX 3104168 gltX Methylococcus capsulatus str. Bath glutamyl-tRNA synthetase YP_113698.1 1299444 D 243233 CDS YP_113699.1 53804442 3103707 complement(1301080..1301298) 1 NC_002977.6 hypothetical protein 1301298 3103707 MCA1235 Methylococcus capsulatus str. Bath hypothetical protein YP_113699.1 1301080 R 243233 CDS YP_113700.1 53804441 3103614 complement(1302192..1304330) 1 NC_002977.6 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein 1304330 3103614 MCA1237 Methylococcus capsulatus str. Bath sensory box protein YP_113700.1 1302192 R 243233 CDS YP_113701.1 53804433 3102766 complement(1304430..1313096) 1 NC_002977.6 identified by similarity to GP:24575128; match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01590; match to protein family HMM PF02801; polyketide synthase 1313096 3102766 MCA1238 Methylococcus capsulatus str. Bath polyketide synthase YP_113701.1 1304430 R 243233 CDS YP_113702.1 53804432 3102937 complement(1313343..1316441) 1 NC_002977.6 identified by match to protein family HMM TIGR00914; CzcA family heavy metal efflux protein 1316441 3102937 MCA1239 Methylococcus capsulatus str. Bath CzcA family heavy metal efflux protein YP_113702.1 1313343 R 243233 CDS YP_113703.1 53804431 3102936 1316654..1317247 1 NC_002977.6 identified by similarity to SP:P09550; match to protein family HMM PF02441; match to protein family HMM TIGR00421; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1317247 ubiX 3102936 ubiX Methylococcus capsulatus str. Bath 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_113703.1 1316654 D 243233 CDS YP_113704.1 53804430 3104140 complement(1317254..1317403) 1 NC_002977.6 identified by similarity to OMNI:NTL01AT1813; hypothetical protein 1317403 3104140 MCA1241 Methylococcus capsulatus str. Bath hypothetical protein YP_113704.1 1317254 R 243233 CDS YP_113705.1 53804429 3103332 complement(1317444..1318466) 1 NC_002977.6 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 1318466 pyrD 3103332 pyrD Methylococcus capsulatus str. Bath dihydroorotate dehydrogenase 2 YP_113705.1 1317444 R 243233 CDS YP_113706.1 53804428 3103331 complement(1318463..1319173) 1 NC_002977.6 identified by similarity to SP:Q58499; hypothetical protein 1319173 3103331 MCA1243 Methylococcus capsulatus str. Bath hypothetical protein YP_113706.1 1318463 R 243233 CDS YP_113707.1 53804427 3102905 complement(1319170..1319700) 1 NC_002977.6 hypothetical protein 1319700 3102905 MCA1244 Methylococcus capsulatus str. Bath hypothetical protein YP_113707.1 1319170 R 243233 CDS YP_113708.1 53804426 3104490 complement(1319764..1321161) 1 NC_002977.6 identified by match to protein family HMM PF00809; pterin-binding domain-containing protein 1321161 3104490 MCA1245 Methylococcus capsulatus str. Bath pterin-binding domain-containing protein YP_113708.1 1319764 R 243233 CDS YP_113709.1 53804418 3104510 complement(1321243..1325379) 1 NC_002977.6 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM PF01739; match to protein family HMM PF03705; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; methyltransferase CheR 1325379 3104510 MCA1246 Methylococcus capsulatus str. Bath methyltransferase CheR YP_113709.1 1321243 R 243233 CDS YP_113710.1 53804417 3104273 complement(1325412..1327052) 1 NC_002977.6 identified by similarity to SP:P11537; match to protein family HMM PF00342; glucose-6-phosphate isomerase 1327052 pgi 3104273 pgi Methylococcus capsulatus str. Bath glucose-6-phosphate isomerase YP_113710.1 1325412 R 243233 CDS YP_113711.1 53804416 3104272 1327193..1328590 1 NC_002977.6 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 1328590 argH 3104272 argH Methylococcus capsulatus str. Bath argininosuccinate lyase YP_113711.1 1327193 D 243233 CDS YP_113712.1 53804415 3104108 1328590..1329213 1 NC_002977.6 identified by match to protein family HMM PF00300; alpha-ribazole-5'-phosphate phosphatase 1329213 3104108 MCA1249 Methylococcus capsulatus str. Bath alpha-ribazole-5'-phosphate phosphatase YP_113712.1 1328590 D 243233 CDS YP_113713.1 53804414 3104917 complement(1329226..1330524) 1 NC_002977.6 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; hypothetical protein 1330524 3104917 MCA1250 Methylococcus capsulatus str. Bath hypothetical protein YP_113713.1 1329226 R 243233 CDS YP_113714.1 53804413 3104916 1330927..1332189 1 NC_002977.6 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 1332189 3104916 MCA1251 Methylococcus capsulatus str. Bath 6-phosphofructokinase YP_113714.1 1330927 D 243233 CDS YP_113715.2 161579537 3102233 1332289..1334373 1 NC_002977.6 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 1334373 hppA 3102233 hppA Methylococcus capsulatus str. Bath membrane-bound proton-translocating pyrophosphatase YP_113715.2 1332289 D 243233 CDS YP_113716.1 53804411 3104821 1334611..1336659 1 NC_002977.6 identified by similarity to SP:P27298; match to protein family HMM PF01432; oligopeptidase A 1336659 prlC 3104821 prlC Methylococcus capsulatus str. Bath oligopeptidase A YP_113716.1 1334611 D 243233 CDS YP_113717.1 53804402 3102082 1336693..1336863 1 NC_002977.6 identified by similarity to SP:P09947; match to protein family HMM PF00301; rubredoxin 1336863 3102082 MCA1254 Methylococcus capsulatus str. Bath rubredoxin YP_113717.1 1336693 D 243233 CDS YP_113718.1 53804401 3102081 complement(1336903..1337031) 1 NC_002977.6 hypothetical protein 1337031 3102081 MCA1255 Methylococcus capsulatus str. Bath hypothetical protein YP_113718.1 1336903 R 243233 CDS YP_113719.1 53804400 3104560 1338051..1338665 1 NC_002977.6 identified by similarity to GP:17427469; match to protein family HMM PF04280; hypothetical protein 1338665 3104560 MCA1256 Methylococcus capsulatus str. Bath hypothetical protein YP_113719.1 1338051 D 243233 CDS YP_113720.1 53804399 3102200 1338701..1339198 1 NC_002977.6 identified by similarity to SP:P35160; resA domain-containing protein 1339198 3102200 MCA1257 Methylococcus capsulatus str. Bath resA domain-containing protein YP_113720.1 1338701 D 243233 CDS YP_113721.1 53804398 3102199 1339203..1339625 1 NC_002977.6 identified by match to protein family HMM PF03653; match to protein family HMM TIGR00701; hypothetical protein 1339625 3102199 MCA1258 Methylococcus capsulatus str. Bath hypothetical protein YP_113721.1 1339203 D 243233 CDS YP_113722.1 53804397 3103429 1339640..1339852 1 NC_002977.6 identified by similarity to GP:8246798; hypothetical protein 1339852 3103429 MCA1259 Methylococcus capsulatus str. Bath hypothetical protein YP_113722.1 1339640 D 243233 CDS YP_113723.1 53804396 3102057 1339919..1340686 1 NC_002977.6 identified by match to protein family HMM PF00196; LuxR family transcriptional regulator 1340686 3102057 MCA1260 Methylococcus capsulatus str. Bath LuxR family transcriptional regulator YP_113723.1 1339919 D 243233 CDS YP_113724.1 53804395 3102056 1341454..1344525 1 NC_002977.6 hypothetical protein 1344525 3102056 MCA1261 Methylococcus capsulatus str. Bath hypothetical protein YP_113724.1 1341454 D 243233 CDS YP_113725.1 53804394 3102209 1344687..1345100 1 NC_002977.6 hypothetical protein 1345100 3102209 MCA1262 Methylococcus capsulatus str. Bath hypothetical protein YP_113725.1 1344687 D 243233 CDS YP_113726.1 53804385 3102846 complement(1345763..1346545) 1 NC_002977.6 identified by similarity to SP:P29132; match to protein family HMM PF00106; enoyl-ACP reductase 1346545 fabI 3102846 fabI Methylococcus capsulatus str. Bath enoyl-ACP reductase YP_113726.1 1345763 R 243233 CDS YP_113727.1 53804384 3103597 1346677..1348842 1 NC_002977.6 identified by similarity to SP:P23843; match to protein family HMM PF00496; peptide ABC transporter substrate-binding protein 1348842 3103597 MCA1264 Methylococcus capsulatus str. Bath peptide ABC transporter substrate-binding protein YP_113727.1 1346677 D 243233 CDS YP_113728.1 53804383 3103733 1348839..1349816 1 NC_002977.6 identified by similarity to SP:P26903; match to protein family HMM PF00528; peptide ABC transporter permease 1349816 3103733 MCA1265 Methylococcus capsulatus str. Bath peptide ABC transporter permease YP_113728.1 1348839 D 243233 CDS YP_113729.1 53804382 3103732 1349816..1351204 1 NC_002977.6 identified by match to protein family HMM PF00528; peptide ABC transporter permease 1351204 3103732 MCA1266 Methylococcus capsulatus str. Bath peptide ABC transporter permease YP_113729.1 1349816 D 243233 CDS YP_113730.1 53804381 3104731 1351217..1352059 1 NC_002977.6 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488; phosphoserine phosphatase 1352059 serB 3104731 serB Methylococcus capsulatus str. Bath phosphoserine phosphatase YP_113730.1 1351217 D 243233 CDS YP_113731.1 53804380 3102969 1352056..1353678 1 NC_002977.6 identified by similarity to OMNI:NTL03PA01808; match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein 1353678 3102969 MCA1268 Methylococcus capsulatus str. Bath peptide ABC transporter ATP-binding protein YP_113731.1 1352056 D 243233 CDS YP_113732.1 53804379 3102968 1353693..1354091 1 NC_002977.6 identified by similarity to OMNI:NTL01SMB00250; match to protein family HMM PF06803; hypothetical protein 1354091 3102968 MCA1269 Methylococcus capsulatus str. Bath hypothetical protein YP_113732.1 1353693 D 243233 CDS YP_113733.1 53804378 3103704 complement(1354291..1354839) 1 NC_002977.6 identified by similarity to GP:9107113; match to protein family HMM PF01883; hypothetical protein 1354839 3103704 MCA1270 Methylococcus capsulatus str. Bath hypothetical protein YP_113733.1 1354291 R 243233 CDS YP_113734.1 53804377 3102702 complement(1354826..1355593) 1 NC_002977.6 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase 1355593 3102702 MCA1271 Methylococcus capsulatus str. Bath short chain dehydrogenase/reductase oxidoreductase YP_113734.1 1354826 R 243233 CDS YP_113735.1 53804376 3102701 complement(1355590..1356303) 1 NC_002977.6 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 1356303 ubiG 3102701 ubiG Methylococcus capsulatus str. Bath 3-demethylubiquinone-9 3-methyltransferase YP_113735.1 1355590 R 243233 CDS YP_113736.1 53804375 3103507 complement(1356317..1357633) 1 NC_002977.6 Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; N-ethylammeline chlorohydrolase 1357633 3103507 MCA1273 Methylococcus capsulatus str. Bath N-ethylammeline chlorohydrolase YP_113736.1 1356317 R 243233 CDS YP_113737.1 53804374 3103816 1358613..1359677 1 NC_002977.6 identified by similarity to OMNI:NTL02ML6584; match to protein family HMM PF01594; hypothetical protein 1359677 3103816 MCA1275 Methylococcus capsulatus str. Bath hypothetical protein YP_113737.1 1358613 D 243233 CDS YP_113738.1 53804366 3104636 1359698..1360513 1 NC_002977.6 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 1360513 murI 3104636 murI Methylococcus capsulatus str. Bath glutamate racemase YP_113738.1 1359698 D 243233 CDS YP_113739.1 53804365 3104798 complement(1360555..1361994) 1 NC_002977.6 identified by similarity to SP:P02930; match to protein family HMM PF02321; match to protein family HMM TIGR01844; outer membrane protein TolC 1361994 3104798 MCA1277 Methylococcus capsulatus str. Bath outer membrane protein TolC YP_113739.1 1360555 R 243233 CDS YP_113740.1 53804364 3102256 1362346..1363449 1 NC_002977.6 identified by similarity to OMNI:NTL01SMB00178; hypothetical protein 1363449 3102256 MCA1278 Methylococcus capsulatus str. Bath hypothetical protein YP_113740.1 1362346 D 243233 CDS YP_113741.1 53804363 3102255 1363415..1364404 1 NC_002977.6 identified by similarity to OMNI:NTL01SMB00179; match to protein family HMM TIGR02276; hypothetical protein 1364404 3102255 MCA1279 Methylococcus capsulatus str. Bath hypothetical protein YP_113741.1 1363415 D 243233 CDS YP_113742.1 53804362 3102845 1364401..1365144 1 NC_002977.6 identified by similarity to OMNI:NTL01SMB00184; match to protein family HMM PF00005; ABC transporter ATP-binding protein 1365144 3102845 MCA1280 Methylococcus capsulatus str. Bath ABC transporter ATP-binding protein YP_113742.1 1364401 D 243233 CDS YP_113743.1 53804361 3103252 1365141..1365944 1 NC_002977.6 identified by match to protein family HMM PF01061; ABC transporter permease 1365944 3103252 MCA1281 Methylococcus capsulatus str. Bath ABC transporter permease YP_113743.1 1365141 D 243233 CDS YP_113744.1 53804360 3103251 1365950..1367023 1 NC_002977.6 identified by similarity to SP:P55295; match to protein family HMM PF01370; match to protein family HMM TIGR01181; dTDP-glucose 4,6-dehydratase 1367023 rfbB 3103251 rfbB Methylococcus capsulatus str. Bath dTDP-glucose 4,6-dehydratase YP_113744.1 1365950 D 243233 CDS YP_113745.1 53804359 3103983 1367020..1367907 1 NC_002977.6 identified by similarity to SP:P55254; match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase 1367907 rfbA 3103983 rfbA Methylococcus capsulatus str. Bath glucose-1-phosphate thymidylyltransferase YP_113745.1 1367020 D 243233 CDS YP_113746.1 53804351 3102530 1367904..1368461 1 NC_002977.6 identified by similarity to GP:14090389; match to protein family HMM PF00908; match to protein family HMM TIGR01221; dTDP-4-dehydrorhamnose 3,5-epimerase 1368461 rfbC 3102530 rfbC Methylococcus capsulatus str. Bath dTDP-4-dehydrorhamnose 3,5-epimerase YP_113746.1 1367904 D 243233 CDS YP_113747.1 53804350 3102225 1368458..1369363 1 NC_002977.6 identified by similarity to SP:P37760; match to protein family HMM PF04321; match to protein family HMM TIGR01214; dTDP-4-dehydrorhamnose reductase 1369363 rfbD 3102225 rfbD Methylococcus capsulatus str. Bath dTDP-4-dehydrorhamnose reductase YP_113747.1 1368458 D 243233 CDS YP_113748.1 53804349 3102379 1369778..1373275 1 NC_002977.6 identified by similarity to SP:P10443; match to protein family HMM PF01336; match to protein family HMM PF02231; match to protein family HMM PF02811; match to protein family HMM TIGR00594; DNA polymerase III subunit alpha 1373275 dnaE 3102379 dnaE Methylococcus capsulatus str. Bath DNA polymerase III subunit alpha YP_113748.1 1369778 D 243233 CDS YP_113749.1 53804348 3102378 1373536..1373751 1 NC_002977.6 hypothetical protein 1373751 3102378 MCA1287 Methylococcus capsulatus str. Bath hypothetical protein YP_113749.1 1373536 D 243233 CDS YP_113750.1 53804647 3103069 complement(1373904..1375757) 1 NC_002977.6 identified by match to protein family HMM PF01471; match to protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase 1375757 3103069 MCA1288 Methylococcus capsulatus str. Bath N-acetylmuramoyl-L-alanine amidase YP_113750.1 1373904 R 243233 CDS YP_113751.1 53804646 3103068 complement(1375769..1377016) 1 NC_002977.6 hypothetical protein 1377016 3103068 MCA1289 Methylococcus capsulatus str. Bath hypothetical protein YP_113751.1 1375769 R 243233 CDS YP_113752.1 53804645 3104730 complement(1377189..1377665) 1 NC_002977.6 hypothetical protein 1377665 3104730 MCA1290 Methylococcus capsulatus str. Bath hypothetical protein YP_113752.1 1377189 R 243233 CDS YP_113753.1 53804644 3103682 complement(1377734..1378243) 1 NC_002977.6 identified by similarity to OMNI:NTL01SS03128; hypothetical protein 1378243 3103682 MCA1291 Methylococcus capsulatus str. Bath hypothetical protein YP_113753.1 1377734 R 243233 CDS YP_113754.1 53804643 3103681 complement(1378308..1378703) 1 NC_002977.6 hypothetical protein 1378703 3103681 MCA1292 Methylococcus capsulatus str. Bath hypothetical protein YP_113754.1 1378308 R 243233 CDS YP_113755.1 53804642 3102579 complement(1378705..1379652) 1 NC_002977.6 identified by similarity to OMNI:NTL02ML1264; match to protein family HMM PF00445; ribonuclease T2 family protein 1379652 3102579 MCA1293 Methylococcus capsulatus str. Bath ribonuclease T2 family protein YP_113755.1 1378705 R 243233 CDS YP_113756.1 53804641 3103100 complement(1379715..1381064) 1 NC_002977.6 identified by similarity to SP:P11880; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 1381064 murF 3103100 murF Methylococcus capsulatus str. Bath UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_113756.1 1379715 R 243233 CDS YP_113757.1 53804640 3103099 1381245..1381520 1 NC_002977.6 hypothetical protein 1381520 3103099 MCA1295 Methylococcus capsulatus str. Bath hypothetical protein YP_113757.1 1381245 D 243233 CDS YP_113758.1 53804639 3104201 complement(1381528..1382874) 1 NC_002977.6 identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase 1382874 3104201 MCA1296 Methylococcus capsulatus str. Bath N-acetylmuramoyl-L-alanine amidase YP_113758.1 1381528 R 243233 CDS YP_113759.1 53804638 3102912 1382943..1384154 1 NC_002977.6 identified by match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 1384154 3102912 MCA1297 Methylococcus capsulatus str. Bath RND family efflux transporter MFP subunit YP_113759.1 1382943 D 243233 CDS YP_113760.1 53804637 3102911 1384158..1387259 1 NC_002977.6 identified by match to protein family HMM TIGR00914; CzcA family heavy metal efflux protein 1387259 3102911 MCA1298 Methylococcus capsulatus str. Bath CzcA family heavy metal efflux protein YP_113760.1 1384158 D 243233 CDS YP_113761.1 53804636 3102595 1387297..1387614 1 NC_002977.6 identified by match to protein family HMM PF00543; nitrogen regulatory protein P-II 1387614 3102595 MCA1299 Methylococcus capsulatus str. Bath nitrogen regulatory protein P-II YP_113761.1 1387297 D 243233 CDS YP_113762.1 53804635 3104929 complement(1387621..1388055) 1 NC_002977.6 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 1388055 3104929 MCA1300 Methylococcus capsulatus str. Bath hypothetical protein YP_113762.1 1387621 R 243233 CDS YP_113763.1 53804634 3104928 complement(1388055..1389365) 1 NC_002977.6 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; hypothetical protein 1389365 3104928 MCA1301 Methylococcus capsulatus str. Bath hypothetical protein YP_113763.1 1388055 R 243233 CDS YP_113764.1 53804633 3102643 1389623..1390744 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04951; match to protein family HMM PF00037; match to protein family HMM TIGR00276; iron-sulfur cluster binding protein 1390744 3102643 MCA1302 Methylococcus capsulatus str. Bath iron-sulfur cluster binding protein YP_113764.1 1389623 D 243233 CDS YP_113765.1 53804624 3104524 complement(1390735..1391349) 1 NC_002977.6 identified by similarity to SP:P39100; match to protein family HMM PF02798; glutathione S-transferase 1391349 gstB 3104524 gstB Methylococcus capsulatus str. Bath glutathione S-transferase YP_113765.1 1390735 R 243233 CDS YP_113766.1 53804623 3102971 1391929..1392654 1 NC_002977.6 identified by similarity to OMNI:VC1375; hypothetical protein 1392654 3102971 MCA1304 Methylococcus capsulatus str. Bath hypothetical protein YP_113766.1 1391929 D 243233 CDS YP_113767.1 53804622 3102970 1392651..1394627 1 NC_002977.6 molecular chaperone DnaK 1394627 3102970 MCA1305 Methylococcus capsulatus str. Bath molecular chaperone DnaK YP_113767.1 1392651 D 243233 CDS YP_113768.1 53804621 3104295 1394584..1397439 1 NC_002977.6 molecular chaperone DnaK 1397439 3104295 MCA1306 Methylococcus capsulatus str. Bath molecular chaperone DnaK YP_113768.1 1394584 D 243233 CDS YP_113769.1 53804620 3102666 1397475..1397912 1 NC_002977.6 identified by similarity to SP:Q12178; match to protein family HMM PF00383; cytosine deaminase 1397912 cdd 3102666 cdd Methylococcus capsulatus str. Bath cytosine deaminase YP_113769.1 1397475 D 243233 CDS YP_113770.1 53804619 3102665 1397995..1398672 1 NC_002977.6 identified by similarity to GP:16502260; match to protein family HMM PF01027; hypothetical protein 1398672 3102665 MCA1308 Methylococcus capsulatus str. Bath hypothetical protein YP_113770.1 1397995 D 243233 CDS YP_113771.1 53804618 3102997 complement(1398752..1400827) 1 NC_002977.6 identified by similarity to SP:P05055; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase 1400827 pnp 3102997 pnp Methylococcus capsulatus str. Bath polynucleotide phosphorylase YP_113771.1 1398752 R 243233 CDS YP_113772.1 53804617 3102148 complement(1400859..1401128) 1 NC_002977.6 identified by similarity to OMNI:VC0646; match to protein family HMM PF00312; match to protein family HMM TIGR00952; 30S ribosomal protein S15 1401128 rpsO 3102148 rpsO Methylococcus capsulatus str. Bath 30S ribosomal protein S15 YP_113772.1 1400859 R 243233 CDS YP_113773.1 53804608 3102756 complement(1401244..1401612) 1 NC_002977.6 This gene is disrupted by an IS element.; tRNA pseudouridine synthase B, interruption-C 1401612 3102756 MCA1311 Methylococcus capsulatus str. Bath tRNA pseudouridine synthase B, interruption-C YP_113773.1 1401244 R 243233 CDS YP_113774.1 53804607 3102755 1401714..1402814 1 NC_002977.6 identified by match to protein family HMM PF01609; ISMca1, transposase 1402814 3102755 MCA1312 Methylococcus capsulatus str. Bath ISMca1, transposase YP_113774.1 1401714 D 243233 CDS YP_113775.1 53804606 3102746 complement(1402824..1403498) 1 NC_002977.6 This gene is disrupted by an IS element.identified by similarity to SP:P09171; match to protein family HMM PF01509; match to protein family HMM TIGR00431; tRNA pseudouridine synthase B, interruption-N 1403498 3102746 MCA1313 Methylococcus capsulatus str. Bath tRNA pseudouridine synthase B, interruption-N YP_113775.1 1402824 R 243233 CDS YP_113776.1 53804605 3103616 complement(1403504..1403863) 1 NC_002977.6 identified by similarity to SP:P09170; match to protein family HMM PF02033; match to protein family HMM TIGR00082; ribosome-binding factor A 1403863 rbfA 3103616 rbfA Methylococcus capsulatus str. Bath ribosome-binding factor A YP_113776.1 1403504 R 243233 CDS YP_113777.1 53804604 3103615 complement(1403876..1406482) 1 NC_002977.6 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1406482 infB 3103615 infB Methylococcus capsulatus str. Bath translation initiation factor IF-2 YP_113777.1 1403876 R 243233 CDS YP_113778.1 53804603 3102698 complement(1406517..1408016) 1 NC_002977.6 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1408016 nusA 3102698 nusA Methylococcus capsulatus str. Bath transcription elongation factor NusA YP_113778.1 1406517 R 243233 CDS YP_113779.1 53804602 3104975 complement(1408035..1408487) 1 NC_002977.6 identified by similarity to GP:9951008; match to protein family HMM PF02576; hypothetical protein 1408487 3104975 MCA1317 Methylococcus capsulatus str. Bath hypothetical protein YP_113779.1 1408035 R 243233 CDS YP_113780.1 53804593 3103834 1408736..1409461 1 NC_002977.6 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 1409461 3103834 MCA1318 Methylococcus capsulatus str. Bath UDP-2,3-diacylglucosamine hydrolase YP_113780.1 1408736 D 243233 CDS YP_113781.1 53804592 3103833 complement(1409473..1410462) 1 NC_002977.6 identified by match to protein family HMM PF00152; hypothetical protein 1410462 3103833 MCA1319 Methylococcus capsulatus str. Bath hypothetical protein YP_113781.1 1409473 R 243233 CDS YP_113782.1 53804591 3102067 complement(1410452..1411018) 1 NC_002977.6 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1411018 efp 3102067 efp Methylococcus capsulatus str. Bath elongation factor P YP_113782.1 1410452 R 243233 CDS YP_113783.1 53804590 3104880 1411118..1412089 1 NC_002977.6 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00238; hypothetical protein 1412089 3104880 MCA1321 Methylococcus capsulatus str. Bath hypothetical protein YP_113783.1 1411118 D 243233 CDS YP_113784.1 53804589 3104879 complement(1412162..1413106) 1 NC_002977.6 identified by similarity to GP:12659324; match to protein family HMM PF06189; 5'-nucleotidase 1413106 3104879 MCA1322 Methylococcus capsulatus str. Bath 5'-nucleotidase YP_113784.1 1412162 R 243233 CDS YP_113785.1 53804588 3104495 complement(1413103..1413255) 1 NC_002977.6 hypothetical protein 1413255 3104495 MCA1323 Methylococcus capsulatus str. Bath hypothetical protein YP_113785.1 1413103 R 243233 CDS YP_113786.1 53804587 3102084 1413254..1413688 1 NC_002977.6 hypothetical protein 1413688 3102084 MCA1324 Methylococcus capsulatus str. Bath hypothetical protein YP_113786.1 1413254 D 243233 CDS YP_113787.1 53804586 3102083 complement(1413723..1414067) 1 NC_002977.6 identified by similarity to GP:18145688; match to protein family HMM PF01230; HIT family protein 1414067 3102083 MCA1325 Methylococcus capsulatus str. Bath HIT family protein YP_113787.1 1413723 R 243233 CDS YP_113788.1 53804578 3104652 complement(1414095..1414691) 1 NC_002977.6 identified by similarity to SP:P12727; match to protein family HMM PF01751; match to protein family HMM PF02132; match to protein family HMM TIGR00615; recombination protein RecR 1414691 recR 3104652 recR Methylococcus capsulatus str. Bath recombination protein RecR YP_113788.1 1414095 R 243233 CDS YP_113789.1 53804577 3104404 complement(1414698..1415021) 1 NC_002977.6 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 1415021 3104404 MCA1327 Methylococcus capsulatus str. Bath hypothetical protein YP_113789.1 1414698 R 243233 CDS YP_113790.1 53804576 3104403 complement(1415031..1416674) 1 NC_002977.6 identified by similarity to SP:P06710; match to protein family HMM PF00004; DNA polymerase III, gamma and tau subunits, programmed frameshift 1416674 dnaZX 3104403 dnaZX Methylococcus capsulatus str. Bath DNA polymerase III, gamma and tau subunits, programmed frameshift YP_113790.1 1415031 R 243233 CDS YP_113791.1 53804575 3104094 1416957..1417133 1 NC_002977.6 hypothetical protein 1417133 3104094 MCA1329 Methylococcus capsulatus str. Bath hypothetical protein YP_113791.1 1416957 D 243233 CDS YP_113792.1 53804574 3102120 complement(1417183..1418604) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA01006; match to protein family HMM PF01435; hypothetical protein 1418604 3102120 MCA1330 Methylococcus capsulatus str. Bath hypothetical protein YP_113792.1 1417183 R 243233 CDS YP_113793.1 53804573 3102119 1418735..1419106 1 NC_002977.6 identified by similarity to SP:O87896; match to protein family HMM PF02635; intracellular sulfur oxidation protein DsrE 1419106 dsrE 3102119 dsrE Methylococcus capsulatus str. Bath intracellular sulfur oxidation protein DsrE YP_113793.1 1418735 D 243233 CDS YP_113794.1 53804572 3103228 1419103..1419471 1 NC_002977.6 intracellular sulfur oxidation protein DsrF 1419471 dsrF 3103228 dsrF Methylococcus capsulatus str. Bath intracellular sulfur oxidation protein DsrF YP_113794.1 1419103 D 243233 CDS YP_113795.1 53804563 3103149 1419468..1419776 1 NC_002977.6 identified by similarity to GP:3228384; match to protein family HMM PF04077; intracellular sulfur oxidation protein DsrH 1419776 3103149 MCA1333 Methylococcus capsulatus str. Bath intracellular sulfur oxidation protein DsrH YP_113795.1 1419468 D 243233 CDS YP_113796.1 53804562 3102299 1419767..1420090 1 NC_002977.6 identified by similarity to GP:3228385; match to protein family HMM PF04358; intracellular sulfur oxidation protein DsrC 1420090 3102299 MCA1334 Methylococcus capsulatus str. Bath intracellular sulfur oxidation protein DsrC YP_113796.1 1419767 D 243233 CDS YP_113797.1 53804561 3102298 1420237..1420725 1 NC_002977.6 identified by similarity to SP:P26602; match to protein family HMM PF04345; chorismate--pyruvate lyase 1420725 3102298 MCA1335 Methylococcus capsulatus str. Bath chorismate--pyruvate lyase YP_113797.1 1420237 D 243233 CDS YP_113798.1 53804560 3104248 1420722..1421600 1 NC_002977.6 identified by similarity to SP:P26601; match to protein family HMM PF01040; match to protein family HMM TIGR01474; 4-hydroxybenzoate octaprenyltransferase 1421600 ubiA 3104248 ubiA Methylococcus capsulatus str. Bath 4-hydroxybenzoate octaprenyltransferase YP_113798.1 1420722 D 243233 CDS YP_113799.1 53804559 3102065 complement(1421714..1422535) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA03747; match to protein family HMM PF01578; hypothetical protein 1422535 3102065 MCA1337 Methylococcus capsulatus str. Bath hypothetical protein YP_113799.1 1421714 R 243233 CDS YP_113800.1 53804558 3102064 1422638..1423996 1 NC_002977.6 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 1423996 ffh 3102064 ffh Methylococcus capsulatus str. Bath signal recognition particle protein YP_113800.1 1422638 D 243233 CDS YP_113801.1 53804557 3103333 complement(1424053..1424460) 1 NC_002977.6 identified by similarity to SP:P06688; match to protein family HMM PF00376; match to protein family HMM TIGR02051; mercuric resistance operon regulatory protein 1424460 3103333 MCA1339 Methylococcus capsulatus str. Bath mercuric resistance operon regulatory protein YP_113801.1 1424053 R 243233 CDS YP_113802.1 53804549 3104808 1424708..1426396 1 NC_002977.6 identified by similarity to SP:P94702; match to protein family HMM PF00070; match to protein family HMM PF00403; match to protein family HMM PF02852; match to protein family HMM TIGR02053; mercuric reductase 1426396 merA 3104808 merA Methylococcus capsulatus str. Bath mercuric reductase YP_113802.1 1424708 D 243233 CDS YP_113803.1 53804548 3103838 complement(1426649..1426765) 1 NC_002977.6 identified by similarity to SP:P24580; hypothetical protein 1426765 3103838 MCA1341 Methylococcus capsulatus str. Bath hypothetical protein YP_113803.1 1426649 R 243233 CDS YP_113804.1 53804547 3102220 complement(1427030..1427140) 1 NC_002977.6 hypothetical protein 1427140 3102220 MCA1342 Methylococcus capsulatus str. Bath hypothetical protein YP_113804.1 1427030 R 243233 CDS YP_113805.1 53804546 3102219 1427240..1427773 1 NC_002977.6 identified by similarity to OMNI:NTL01SM02930; match to protein family HMM PF00126; molybdenum transport protein 1427773 3102219 MCA1343 Methylococcus capsulatus str. Bath molybdenum transport protein YP_113805.1 1427240 D 243233 CDS YP_113806.1 53804545 3104786 complement(1427976..1429052) 1 NC_002977.6 identified by match to protein family HMM PF00589; phage integrase site specific recombinase 1429052 3104786 MCA1344 Methylococcus capsulatus str. Bath phage integrase site specific recombinase YP_113806.1 1427976 R 243233 CDS YP_113807.1 53804544 3104605 complement(1429614..1430699) 1 NC_002977.6 identified by match to protein family HMM PF01758; sodium/bile acid symporter family protein 1430699 3104605 MCA1346 Methylococcus capsulatus str. Bath sodium/bile acid symporter family protein YP_113807.1 1429614 R 243233 CDS YP_113808.1 53804543 3104604 complement(1431465..1432946) 1 NC_002977.6 identified by similarity to SP:P29801; match to protein family HMM PF00361; match to protein family HMM TIGR01770; NADH dehydrogenase I subunit N 1432946 nuoN 3104604 nuoN Methylococcus capsulatus str. Bath NADH dehydrogenase I subunit N YP_113808.1 1431465 R 243233 CDS YP_113809.1 53804542 3105075 complement(1432948..1434417) 1 NC_002977.6 identified by similarity to SP:P31978; match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH dehydrogenase I subunit M 1434417 nuoM 3105075 nuoM Methylococcus capsulatus str. Bath NADH dehydrogenase I subunit M YP_113809.1 1432948 R 243233 CDS YP_113810.1 53804533 3102546 complement(1434414..1436255) 1 NC_002977.6 identified by similarity to SP:P33607; match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974; NADH dehydrogenase I subunit L 1436255 nuoL 3102546 nuoL Methylococcus capsulatus str. Bath NADH dehydrogenase I subunit L YP_113810.1 1434414 R 243233 CDS YP_113811.1 53804532 3103403 complement(1436264..1436572) 1 NC_002977.6 identified by similarity to SP:P33606; match to protein family HMM PF00420; NADH dehydrogenase I subunit K 1436572 nuoK 3103403 nuoK Methylococcus capsulatus str. Bath NADH dehydrogenase I subunit K YP_113811.1 1436264 R 243233 CDS YP_113812.1 53804531 3103402 complement(1436584..1437078) 1 NC_002977.6 identified by similarity to SP:P33605; match to protein family HMM PF00499; NADH dehydrogenase I subunit J 1437078 nuoJ 3103402 nuoJ Methylococcus capsulatus str. Bath NADH dehydrogenase I subunit J YP_113812.1 1436584 R 243233 CDS YP_113813.1 53804530 3102172 complement(1437101..1437616) 1 NC_002977.6 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1437616 nuoI 3102172 nuoI Methylococcus capsulatus str. Bath NADH dehydrogenase subunit I YP_113813.1 1437101 R 243233 CDS YP_113814.1 53804529 3102504 complement(1437630..1438580) 1 NC_002977.6 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 1438580 nuoH 3102504 nuoH Methylococcus capsulatus str. Bath NADH dehydrogenase subunit H YP_113814.1 1437630 R 243233 CDS YP_113815.1 53804528 3102503 complement(1438577..1441366) 1 NC_002977.6 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 1441366 nuoG 3102503 nuoG Methylococcus capsulatus str. Bath NADH dehydrogenase subunit G YP_113815.1 1438577 R 243233 CDS YP_113816.1 53804527 3102556 complement(1441359..1442642) 1 NC_002977.6 identified by similarity to SP:P31979; match to protein family HMM PF01512; match to protein family HMM TIGR01959; NADH dehydrogenase I subunit F 1442642 nuoF 3102556 nuoF Methylococcus capsulatus str. Bath NADH dehydrogenase I subunit F YP_113816.1 1441359 R 243233 CDS YP_113817.1 53804526 3104979 complement(1442642..1443115) 1 NC_002977.6 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 1443115 nuoE 3104979 nuoE Methylococcus capsulatus str. Bath NADH dehydrogenase subunit E YP_113817.1 1442642 R 243233 CDS YP_113818.1 53804525 3104978 complement(1443128..1444891) 1 NC_002977.6 NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; NADH:ubiquinone oxidoreductase subunit C/D 1444891 nuoCD 3104978 nuoCD Methylococcus capsulatus str. Bath NADH:ubiquinone oxidoreductase subunit C/D YP_113818.1 1443128 R 243233 CDS YP_113819.1 53804524 3103549 complement(1444910..1445551) 1 NC_002977.6 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1445551 nuoB 3103549 nuoB Methylococcus capsulatus str. Bath NADH dehydrogenase subunit B YP_113819.1 1444910 R 243233 CDS YP_113820.1 53804523 3102690 complement(1445561..1445980) 1 NC_002977.6 identified by similarity to SP:P33597; match to protein family HMM PF00507; NADH dehydrogenase I subunit A 1445980 nuoA 3102690 nuoA Methylococcus capsulatus str. Bath NADH dehydrogenase I subunit A YP_113820.1 1445561 R 243233 CDS YP_113821.1 53804522 3102689 complement(1446164..1449328) 1 NC_002977.6 identified by match to protein family HMM TIGR00915; hydrophobe/amphiphile efflux-1 (HAE1) family protein 1449328 3102689 MCA1360 Methylococcus capsulatus str. Bath hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_113821.1 1446164 R 243233 CDS YP_113822.1 53804521 3102099 complement(1449325..1450488) 1 NC_002977.6 identified by similarity to GP:19880979; match to protein family HMM PF00529; match to protein family HMM TIGR01730; HlyD family secretion protein 1450488 3102099 MCA1361 Methylococcus capsulatus str. Bath HlyD family secretion protein YP_113822.1 1449325 R 243233 CDS YP_113823.1 53804520 3104767 complement(1450622..1452298) 1 NC_002977.6 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; outer membrane efflux family protein 1452298 3104767 MCA1362 Methylococcus capsulatus str. Bath outer membrane efflux family protein YP_113823.1 1450622 R 243233 CDS YP_113824.1 53804512 3103349 1452958..1453842 1 NC_002977.6 identified by similarity to OMNI:NTL03PA03804; hypothetical protein 1453842 3103349 MCA1363 Methylococcus capsulatus str. Bath hypothetical protein YP_113824.1 1452958 D 243233 CDS YP_113825.1 53804347 3104633 complement(1454445..1455530) 1 NC_002977.6 identified by similarity to OMNI:NTL01SM00467; match to protein family HMM PF03692; hypothetical protein 1455530 3104633 MCA1365 Methylococcus capsulatus str. Bath hypothetical protein YP_113825.1 1454445 R 243233 CDS YP_113826.1 53804346 3103579 complement(1455628..1456131) 1 NC_002977.6 hypothetical protein 1456131 3103579 MCA1366 Methylococcus capsulatus str. Bath hypothetical protein YP_113826.1 1455628 R 243233 CDS YP_113827.1 53804345 3103578 complement(1456150..1458054) 1 NC_002977.6 identified by similarity to SP:P45535; match to protein family HMM PF00005; ABC transporter ATP-binding protein 1458054 3103578 MCA1367 Methylococcus capsulatus str. Bath ABC transporter ATP-binding protein YP_113827.1 1456150 R 243233 CDS YP_113828.1 53804344 3104951 1458776..1459255 1 NC_002977.6 identified by match to protein family HMM PF00210; match to protein family HMM TIGR00754; bacterioferritin 1459255 bfr-2 3104951 bfr-2 Methylococcus capsulatus str. Bath bacterioferritin YP_113828.1 1458776 D 243233 CDS YP_113829.1 53805180 3102842 1459387..1459590 1 NC_002977.6 identified by similarity to SP:P13655; match to protein family HMM PF04324; bacterioferritin-associated ferredoxin 1459590 bfd 3102842 bfd Methylococcus capsulatus str. Bath bacterioferritin-associated ferredoxin YP_113829.1 1459387 D 243233 CDS YP_113830.1 53804337 3102451 complement(1460092..1460667) 1 NC_002977.6 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1460667 def 3102451 def Methylococcus capsulatus str. Bath peptide deformylase YP_113830.1 1460092 R 243233 CDS YP_113831.1 53804336 3102224 complement(1460669..1461490) 1 NC_002977.6 identified by similarity to SP:P17117; match to protein family HMM PF00881; nitroreductase 1461490 3102224 MCA1372 Methylococcus capsulatus str. Bath nitroreductase YP_113831.1 1460669 R 243233 CDS YP_113832.1 53804335 3104861 complement(1461444..1461917) 1 NC_002977.6 lipoprotein 1461917 3104861 MCA1373 Methylococcus capsulatus str. Bath lipoprotein YP_113832.1 1461444 R 243233 CDS YP_113833.1 53804334 3104860 1461993..1462208 1 NC_002977.6 hypothetical protein 1462208 3104860 MCA1374 Methylococcus capsulatus str. Bath hypothetical protein YP_113833.1 1461993 D 243233 CDS YP_113834.1 53804333 3103705 complement(1462183..1464015) 1 NC_002977.6 hypothetical protein 1464015 3103705 MCA1375 Methylococcus capsulatus str. Bath hypothetical protein YP_113834.1 1462183 R 243233 CDS YP_113835.1 53804332 3103480 1464267..1465016 1 NC_002977.6 identified by similarity to SP:P37734; match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdenum ABC transporter periplasmic molybdate-binding protein 1465016 modA-1 3103480 modA-1 Methylococcus capsulatus str. Bath molybdenum ABC transporter periplasmic molybdate-binding protein YP_113835.1 1464267 D 243233 CDS YP_113836.1 53804331 3103479 1465046..1465816 1 NC_002977.6 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdenum ABC transporter periplasmic molybdate-binding protein 1465816 modA-2 3103479 modA-2 Methylococcus capsulatus str. Bath molybdenum ABC transporter periplasmic molybdate-binding protein YP_113836.1 1465046 D 243233 CDS YP_113837.1 53804322 3104227 1465827..1466507 1 NC_002977.6 identified by similarity to SP:P37731; match to protein family HMM PF00528; match to protein family HMM TIGR02141; molybdenum ABC transporter permease 1466507 modB 3104227 modB Methylococcus capsulatus str. Bath molybdenum ABC transporter permease YP_113837.1 1465827 D 243233 CDS YP_113838.1 53804321 3102212 1466509..1467579 1 NC_002977.6 identified by similarity to SP:P37732; match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM TIGR02142; molybdenum ABC transporter ATP-binding protein 1467579 modC 3102212 modC Methylococcus capsulatus str. Bath molybdenum ABC transporter ATP-binding protein YP_113838.1 1466509 D 243233 CDS YP_113839.1 53804320 3103509 1467677..1468105 1 NC_002977.6 identified by similarity to GP:14277844; match to protein family HMM PF03459; match to protein family HMM TIGR00638; molybdenum transport protein ModG 1468105 3103509 MCA1381 Methylococcus capsulatus str. Bath molybdenum transport protein ModG YP_113839.1 1467677 D 243233 CDS YP_113840.1 53804319 3103508 complement(1468174..1469001) 1 NC_002977.6 hypothetical protein 1469001 3103508 MCA1382 Methylococcus capsulatus str. Bath hypothetical protein YP_113840.1 1468174 R 243233 CDS YP_113841.1 53804317 3103035 complement(1469052..1469936) 1 NC_002977.6 metalloprotease; heat shock protein HtpX 1469936 htpX 3103035 htpX Methylococcus capsulatus str. Bath heat shock protein HtpX YP_113841.1 1469052 R 243233 CDS YP_113842.1 53804318 3102121 1470045..1470788 1 NC_002977.6 UbiE/COQ5 family methlytransferase 1470788 3102121 MCA1384 Methylococcus capsulatus str. Bath UbiE/COQ5 family methlytransferase YP_113842.1 1470045 D 243233 CDS YP_113843.1 53804316 3103034 1470818..1472161 1 NC_002977.6 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1472161 radA 3103034 radA Methylococcus capsulatus str. Bath DNA repair protein RadA YP_113843.1 1470818 D 243233 CDS YP_113844.1 53804315 3103275 1472158..1472403 1 NC_002977.6 hypothetical protein 1472403 3103275 MCA1386 Methylococcus capsulatus str. Bath hypothetical protein YP_113844.1 1472158 D 243233 CDS YP_113845.1 53804305 3105070 complement(1472641..1473138) 1 NC_002977.6 identified by similarity to SP:P45947; match to protein family HMM PF01451; arsenate reductase 1473138 3105070 MCA1387 Methylococcus capsulatus str. Bath arsenate reductase YP_113845.1 1472641 R 243233 CDS YP_113846.1 53804304 3105069 complement(1473135..1473476) 1 NC_002977.6 identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 1473476 3105069 MCA1388 Methylococcus capsulatus str. Bath ArsR family transcriptional regulator YP_113846.1 1473135 R 243233 CDS YP_113847.1 53804303 3102154 complement(1473618..1473851) 1 NC_002977.6 identified by similarity to GP:3724147; formate dehydrogenase subunit delta 1473851 3102154 MCA1389 Methylococcus capsulatus str. Bath formate dehydrogenase subunit delta YP_113847.1 1473618 R 243233 CDS YP_113848.1 53804302 3104958 complement(1473869..1474789) 1 NC_002977.6 identified by similarity to SP:P32177; match to protein family HMM PF02634; match to protein family HMM TIGR00129; formate dehydrogenase accessory protein FdhD 1474789 fdhD 3104958 fdhD Methylococcus capsulatus str. Bath formate dehydrogenase accessory protein FdhD YP_113848.1 1473869 R 243233 CDS YP_113849.1 53804301 3104957 complement(1474796..1477639) 1 NC_002977.6 identified by similarity to GP:17743211; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; formate dehydrogenase subunit alpha 1477639 3104957 MCA1391 Methylococcus capsulatus str. Bath formate dehydrogenase subunit alpha YP_113849.1 1474796 R 243233 CDS YP_113850.1 53804300 3102949 complement(1477696..1479246) 1 NC_002977.6 identified by similarity to GP:3724144; match to protein family HMM PF01512; formate dehydrogenase subunit beta 1479246 3102949 MCA1392 Methylococcus capsulatus str. Bath formate dehydrogenase subunit beta YP_113850.1 1477696 R 243233 CDS YP_113851.1 53804299 3104512 complement(1479243..1479722) 1 NC_002977.6 catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor; formate dehydrogenase subunit gamma 1479722 3104512 MCA1393 Methylococcus capsulatus str. Bath formate dehydrogenase subunit gamma YP_113851.1 1479243 R 243233 CDS YP_113852.1 53804290 3104480 complement(1479866..1481497) 1 NC_002977.6 hypothetical protein 1481497 3104480 MCA1394 Methylococcus capsulatus str. Bath hypothetical protein YP_113852.1 1479866 R 243233 CDS YP_113853.1 53804289 3104479 1481572..1483350 1 NC_002977.6 hypothetical protein 1483350 3104479 MCA1395 Methylococcus capsulatus str. Bath hypothetical protein YP_113853.1 1481572 D 243233 CDS YP_113854.1 53804288 3104907 complement(1483434..1484102) 1 NC_002977.6 identified by match to protein family HMM PF00226; DnaJ domain-containing protein 1484102 3104907 MCA1396 Methylococcus capsulatus str. Bath DnaJ domain-containing protein YP_113854.1 1483434 R 243233 CDS YP_113855.1 53804287 3103208 complement(1484162..1484479) 1 NC_002977.6 hypothetical protein 1484479 3103208 MCA1397 Methylococcus capsulatus str. Bath hypothetical protein YP_113855.1 1484162 R 243233 CDS YP_113856.1 53804286 3103207 1484611..1485039 1 NC_002977.6 hypothetical protein 1485039 3103207 MCA1398 Methylococcus capsulatus str. Bath hypothetical protein YP_113856.1 1484611 D 243233 CDS YP_113857.1 53804285 3103287 complement(1485107..1487599) 1 NC_002977.6 identified by match to protein family HMM PF02687; ABC transporter permease 1487599 3103287 MCA1399 Methylococcus capsulatus str. Bath ABC transporter permease YP_113857.1 1485107 R 243233 CDS YP_113858.1 53804284 3103620 complement(1487596..1488255) 1 NC_002977.6 identified by similarity to OMNI:VCA0782; match to protein family HMM PF00005; ABC transporter ATP-binding protein 1488255 3103620 MCA1400 Methylococcus capsulatus str. Bath ABC transporter ATP-binding protein YP_113858.1 1487596 R 243233 CDS YP_113859.1 53804283 3103619 1488236..1488916 1 NC_002977.6 identified by similarity to SP:Q07792; match to protein family HMM PF00657; arylesterase 1488916 3103619 MCA1401 Methylococcus capsulatus str. Bath arylesterase YP_113859.1 1488236 D 243233 CDS YP_113860.1 53804282 3104894 1488913..1489266 1 NC_002977.6 identified by similarity to GP:19071499; hypothetical protein 1489266 3104894 MCA1402 Methylococcus capsulatus str. Bath hypothetical protein YP_113860.1 1488913 D 243233 CDS YP_113861.1 53804273 3102442 complement(1489271..1490476) 1 NC_002977.6 identified by similarity to SP:P23931; match to protein family HMM PF01464; membrane-bound lytic murein transglycosylase 1490476 3102442 MCA1403 Methylococcus capsulatus str. Bath membrane-bound lytic murein transglycosylase YP_113861.1 1489271 R 243233 CDS YP_113862.1 53804272 3103258 complement(1490644..1492380) 1 NC_002977.6 identified by match to protein family HMM PF01565; FAD-binding protein 1492380 3103258 MCA1404 Methylococcus capsulatus str. Bath FAD-binding protein YP_113862.1 1490644 R 243233 CDS YP_113863.1 53804271 3103257 complement(1492703..1492948) 1 NC_002977.6 hypothetical protein 1492948 3103257 MCA1405 Methylococcus capsulatus str. Bath hypothetical protein YP_113863.1 1492703 R 243233 CDS YP_113864.1 53804270 3102625 1492959..1494146 1 NC_002977.6 identified by match to protein family HMM PF00266; serine--glyoxylate aminotransferase 1494146 sgaA 3102625 sgaA Methylococcus capsulatus str. Bath serine--glyoxylate aminotransferase YP_113864.1 1492959 D 243233 CDS YP_113865.1 53804269 3104856 1494241..1495212 1 NC_002977.6 Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase 1495212 3104856 MCA1407 Methylococcus capsulatus str. Bath 2-hydroxyacid dehydrogenase YP_113865.1 1494241 D 243233 CDS YP_113866.1 53804268 3104855 1495321..1496187 1 NC_002977.6 identified by similarity to OMNI:CC2910; hypothetical protein 1496187 3104855 MCA1408 Methylococcus capsulatus str. Bath hypothetical protein YP_113866.1 1495321 D 243233 CDS YP_113867.1 53804267 3103969 1496184..1497050 1 NC_002977.6 identified by similarity to SP:P43789; match to protein family HMM PF02666; match to protein family HMM TIGR00163; phosphatidylserine decarboxylase 1497050 psd 3103969 psd Methylococcus capsulatus str. Bath phosphatidylserine decarboxylase YP_113867.1 1496184 D 243233 CDS YP_113868.1 53804259 3102884 complement(1497016..1498221) 1 NC_002977.6 identified by similarity to OMNI:VC1912; hypothetical protein 1498221 3102884 MCA1410 Methylococcus capsulatus str. Bath hypothetical protein YP_113868.1 1497016 R 243233 CDS YP_113869.1 53804258 3103395 complement(1498297..1498584) 1 NC_002977.6 identified by similarity to SP:P08756; match to protein family HMM PF00216; match to protein family HMM TIGR00988; integration host factor subunit beta 1498584 ihfB 3103395 ihfB Methylococcus capsulatus str. Bath integration host factor subunit beta YP_113869.1 1498297 R 243233 CDS YP_113870.1 53804257 3104284 complement(1498659..1500326) 1 NC_002977.6 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1500326 rpsA 3104284 rpsA Methylococcus capsulatus str. Bath 30S ribosomal protein S1 YP_113870.1 1498659 R 243233 CDS YP_113871.1 53804256 3104283 complement(1500445..1501113) 1 NC_002977.6 identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017; cytidylate kinase 1501113 cmk 3104283 cmk Methylococcus capsulatus str. Bath cytidylate kinase YP_113871.1 1500445 R 243233 CDS YP_113872.1 53804255 3103431 complement(1501120..1502388) 1 NC_002977.6 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1502388 aroA 3103431 aroA Methylococcus capsulatus str. Bath 3-phosphoshikimate 1-carboxyvinyltransferase YP_113872.1 1501120 R 243233 CDS YP_113873.1 53804254 3102074 complement(1502426..1503298) 1 NC_002977.6 identified by match to protein family HMM PF02153; prephenate dehydrogenase 1503298 tyrA 3102074 tyrA Methylococcus capsulatus str. Bath prephenate dehydrogenase YP_113873.1 1502426 R 243233 CDS YP_113874.1 53804253 3102073 complement(1503295..1504410) 1 NC_002977.6 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1504410 hisC-2 3102073 hisC-2 Methylococcus capsulatus str. Bath histidinol-phosphate aminotransferase YP_113874.1 1503295 R 243233 CDS YP_113875.1 53804245 3102688 complement(1504421..1505509) 1 NC_002977.6 identified by similarity to SP:P27603; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807; chorismate mutase/prephenate dehydratase 1505509 pheA 3102688 pheA Methylococcus capsulatus str. Bath chorismate mutase/prephenate dehydratase YP_113875.1 1504421 R 243233 CDS YP_113876.1 53804244 3102687 complement(1505539..1505991) 1 NC_002977.6 hypothetical protein 1505991 3102687 MCA1419 Methylococcus capsulatus str. Bath hypothetical protein YP_113876.1 1505539 R 243233 CDS YP_113877.1 53804243 3104546 complement(1506034..1507116) 1 NC_002977.6 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1507116 serC 3104546 serC Methylococcus capsulatus str. Bath phosphoserine aminotransferase YP_113877.1 1506034 R 243233 CDS YP_113878.1 53804242 3102748 complement(1507243..1509825) 1 NC_002977.6 identified by similarity to SP:P09097; match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063; DNA gyrase subunit A 1509825 gyrA 3102748 gyrA Methylococcus capsulatus str. Bath DNA gyrase subunit A YP_113878.1 1507243 R 243233 CDS YP_113879.1 53804241 3102747 complement(1509919..1511772) 1 NC_002977.6 hypothetical protein 1511772 3102747 MCA1422 Methylococcus capsulatus str. Bath hypothetical protein YP_113879.1 1509919 R 243233 CDS YP_113880.1 53804240 3103156 complement(1511745..1512464) 1 NC_002977.6 identified by match to protein family HMM PF01755; glycosyl transferase family protein 1512464 3103156 MCA1423 Methylococcus capsulatus str. Bath glycosyl transferase family protein YP_113880.1 1511745 R 243233 CDS YP_113881.1 53804239 3104839 1512605..1515421 1 NC_002977.6 identified by match to protein family HMM PF07690; transporter 1515421 3104839 MCA1424 Methylococcus capsulatus str. Bath transporter YP_113881.1 1512605 D 243233 CDS YP_113882.1 53804238 3104838 complement(1515416..1516798) 1 NC_002977.6 identified by similarity to GP:17427522; hypothetical protein 1516798 3104838 MCA1425 Methylococcus capsulatus str. Bath hypothetical protein YP_113882.1 1515416 R 243233 CDS YP_113883.1 53804237 3104642 complement(1516798..1517388) 1 NC_002977.6 identified by similarity to SP:P08632; match to protein family HMM PF00132; nodulation protein L 1517388 3104642 MCA1426 Methylococcus capsulatus str. Bath nodulation protein L YP_113883.1 1516798 R 243233 CDS YP_113884.1 53804228 3103071 complement(1517393..1518409) 1 NC_002977.6 identified by similarity to GP:18159365; match to protein family HMM PF00535; glycosyl transferase group 2 family protein 1518409 3103071 MCA1427 Methylococcus capsulatus str. Bath glycosyl transferase group 2 family protein YP_113884.1 1517393 R 243233 CDS YP_113885.1 53804227 3104389 complement(1518402..1519460) 1 NC_002977.6 identified by similarity to OMNI:CC0755; match to protein family HMM PF00534; glycosyl transferase family protein 1519460 3104389 MCA1428 Methylococcus capsulatus str. Bath glycosyl transferase family protein YP_113885.1 1518402 R 243233 CDS YP_113886.1 53804226 3104388 complement(1519457..1521577) 1 NC_002977.6 identified by match to protein family HMM PF02706; chain length determinant protein 1521577 3104388 MCA1429 Methylococcus capsulatus str. Bath chain length determinant protein YP_113886.1 1519457 R 243233 CDS YP_113887.1 53804225 3102250 complement(1521588..1522589) 1 NC_002977.6 identified by similarity to SP:Q45407; match to protein family HMM PF02563; capsular polysaccharide export protein 1522589 3102250 MCA1430 Methylococcus capsulatus str. Bath capsular polysaccharide export protein YP_113887.1 1521588 R 243233 CDS YP_113888.1 53804224 3102724 complement(1522651..1522995) 1 NC_002977.6 identified by similarity to SP:P17903; match to protein family HMM PF01740; match to protein family HMM TIGR00377; anti-anti-sigma factor family protein 1522995 3102724 MCA1431 Methylococcus capsulatus str. Bath anti-anti-sigma factor family protein YP_113888.1 1522651 R 243233 CDS YP_113889.1 53804223 3102723 1523154..1524437 1 NC_002977.6 identified by match to protein family HMM PF00534; glycosyl transferase family protein 1524437 3102723 MCA1432 Methylococcus capsulatus str. Bath glycosyl transferase family protein YP_113889.1 1523154 D 243233 CDS YP_113890.1 53804222 3102349 1524434..1525663 1 NC_002977.6 identified by match to protein family HMM PF00534; glycosyl transferase family protein 1525663 3102349 MCA1433 Methylococcus capsulatus str. Bath glycosyl transferase family protein YP_113890.1 1524434 D 243233 CDS YP_113891.1 53804213 3102768 1525682..1526872 1 NC_002977.6 identified by similarity to GP:15024655; match to protein family HMM PF00535; glycosyl transferase group 2 family protein 1526872 3102768 MCA1434 Methylococcus capsulatus str. Bath glycosyl transferase group 2 family protein YP_113891.1 1525682 D 243233 CDS YP_113892.1 53804212 3103633 1526859..1527833 1 NC_002977.6 identified by match to protein family HMM PF00535; glycosyl transferase family protein 1527833 3103633 MCA1435 Methylococcus capsulatus str. Bath glycosyl transferase family protein YP_113892.1 1526859 D 243233 CDS YP_113893.1 53804211 3103632 1527839..1528351 1 NC_002977.6 identified by similarity to SP:P71405; match to protein family HMM PF00132; serine acetyltransferase CysE 1528351 3103632 MCA1436 Methylococcus capsulatus str. Bath serine acetyltransferase CysE YP_113893.1 1527839 D 243233 CDS YP_113894.1 53804210 3103375 1528353..1529669 1 NC_002977.6 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; sugar transferase 1529669 3103375 MCA1437 Methylococcus capsulatus str. Bath sugar transferase YP_113894.1 1528353 D 243233 CDS YP_113895.1 53804209 3104756 1529722..1530903 1 NC_002977.6 identified by similarity to GP:15023201; hypothetical protein 1530903 3104756 MCA1438 Methylococcus capsulatus str. Bath hypothetical protein YP_113895.1 1529722 D 243233 CDS YP_113896.1 53804208 3104755 1530894..1532357 1 NC_002977.6 identified by similarity to OMNI:NTL01MT01553; hypothetical protein 1532357 3104755 MCA1439 Methylococcus capsulatus str. Bath hypothetical protein YP_113896.1 1530894 D 243233 CDS YP_113897.1 53804207 3103233 1532358..1533533 1 NC_002977.6 identified by match to protein family HMM PF00072; match to protein family HMM PF07228; response regulator 1533533 3103233 MCA1440 Methylococcus capsulatus str. Bath response regulator YP_113897.1 1532358 D 243233 CDS YP_113898.1 53804198 3104562 complement(1533987..1534613) 1 NC_002977.6 identified by match to protein family HMM PF01209; UbiE/COQ5 family methlytransferase 1534613 3104562 MCA1441 Methylococcus capsulatus str. Bath UbiE/COQ5 family methlytransferase YP_113898.1 1533987 R 243233 CDS YP_113899.1 53804197 3103405 complement(1534665..1535309) 1 NC_002977.6 identified by match to protein family HMM PF00484; carbonic anhydrase 1535309 3103405 MCA1442 Methylococcus capsulatus str. Bath carbonic anhydrase YP_113899.1 1534665 R 243233 CDS YP_113900.1 53804196 3103404 complement(1535365..1536966) 1 NC_002977.6 identified by match to protein family HMM PF00916; sulfate transporter family protein 1536966 3103404 MCA1443 Methylococcus capsulatus str. Bath sulfate transporter family protein YP_113900.1 1535365 R 243233 CDS YP_113901.1 53804511 3102520 1537097..1537540 1 NC_002977.6 hypothetical protein 1537540 3102520 MCA1444 Methylococcus capsulatus str. Bath hypothetical protein YP_113901.1 1537097 D 243233 CDS YP_113902.1 53804510 3104781 complement(1537576..1538112) 1 NC_002977.6 hypothetical protein 1538112 3104781 MCA1445 Methylococcus capsulatus str. Bath hypothetical protein YP_113902.1 1537576 R 243233 CDS YP_113903.1 53805228 3104434 1538132..1538206 1 NC_002977.6 identified by match to protein family HMM TIGR02107; coenzyme PQQ biosynthesis protein A 1538206 pqqA 3104434 pqqA Methylococcus capsulatus str. Bath coenzyme PQQ biosynthesis protein A YP_113903.1 1538132 D 243233 CDS YP_113904.1 53804509 3104780 1538293..1539207 1 NC_002977.6 possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB 1539207 pqqB 3104780 pqqB Methylococcus capsulatus str. Bath pyrroloquinoline quinone biosynthesis protein PqqB YP_113904.1 1538293 D 243233 CDS YP_113905.1 53804508 3103081 1539216..1539941 1 NC_002977.6 Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC 1539941 pqqC 3103081 pqqC Methylococcus capsulatus str. Bath pyrroloquinoline quinone biosynthesis protein PqqC YP_113905.1 1539216 D 243233 CDS YP_113906.1 53804507 3105038 1539947..1540228 1 NC_002977.6 with PqqC converts a biosynthetic intermediate to pyrroloquinoline quinone; pyrroloquinoline quinone biosynthesis protein PqqD 1540228 pqqD 3105038 pqqD Methylococcus capsulatus str. Bath pyrroloquinoline quinone biosynthesis protein PqqD YP_113906.1 1539947 D 243233 CDS YP_113907.1 53804506 3105037 1540197..1541318 1 NC_002977.6 identified by similarity to SP:P07782; match to protein family HMM PF04055; match to protein family HMM TIGR02109; pyrroloquinoline quinone biosynthesis protein PqqE 1541318 pqqE 3105037 pqqE Methylococcus capsulatus str. Bath pyrroloquinoline quinone biosynthesis protein PqqE YP_113907.1 1540197 D 243233 CDS YP_113908.1 53804497 3102812 complement(1541635..1542639) 1 NC_002977.6 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 1542639 holA 3102812 holA Methylococcus capsulatus str. Bath DNA polymerase III subunit delta YP_113908.1 1541635 R 243233 CDS YP_113909.1 53804496 3103336 complement(1542636..1543154) 1 NC_002977.6 identified by similarity to SP:P10101; rare lipoprotein B 1543154 rlpB 3103336 rlpB Methylococcus capsulatus str. Bath rare lipoprotein B YP_113909.1 1542636 R 243233 CDS YP_113910.1 53804495 3103369 complement(1543151..1545814) 1 NC_002977.6 identified by match to protein family HMM PF00133; match to protein family HMM TIGR00396; leucyl-tRNA synthetase 1545814 leuS 3103369 leuS Methylococcus capsulatus str. Bath leucyl-tRNA synthetase YP_113910.1 1543151 R 243233 CDS YP_113911.1 53804494 3103368 1545932..1546708 1 NC_002977.6 identified by match to protein family HMM PF01656; ParA family protein 1546708 3103368 MCA1454 Methylococcus capsulatus str. Bath ParA family protein YP_113911.1 1545932 D 243233 CDS YP_113912.1 53804493 3104014 complement(1546705..1548219) 1 NC_002977.6 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 1548219 lnt 3104014 lnt Methylococcus capsulatus str. Bath apolipoprotein N-acyltransferase YP_113912.1 1546705 R 243233 CDS YP_113913.1 53804492 3104945 complement(1548223..1549077) 1 NC_002977.6 identified by similarity to SP:Q9R874; match to protein family HMM PF00571; match to protein family HMM PF03471; magnesium and cobalt efflux protein CorC 1549077 3104945 MCA1456 Methylococcus capsulatus str. Bath magnesium and cobalt efflux protein CorC YP_113913.1 1548223 R 243233 CDS YP_113914.1 53804491 3104944 complement(1549074..1549526) 1 NC_002977.6 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; hypothetical protein 1549526 3104944 MCA1457 Methylococcus capsulatus str. Bath hypothetical protein YP_113914.1 1549074 R 243233 CDS YP_113915.1 53804490 3103166 complement(1549523..1550548) 1 NC_002977.6 identified by similarity to SP:P77349; match to protein family HMM PF02562; PhoH family protein 1550548 3103166 MCA1458 Methylococcus capsulatus str. Bath PhoH family protein YP_113915.1 1549523 R 243233 CDS YP_113916.1 53804481 3102404 complement(1550502..1551878) 1 NC_002977.6 identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01574; tRNA-i(6)A37 modification enzyme MiaB 1551878 3102404 MCA1459 Methylococcus capsulatus str. Bath tRNA-i(6)A37 modification enzyme MiaB YP_113916.1 1550502 R 243233 CDS YP_113917.1 53804480 3102430 complement(1551986..1552567) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA01119; hypothetical protein 1552567 3102430 MCA1460 Methylococcus capsulatus str. Bath hypothetical protein YP_113917.1 1551986 R 243233 CDS YP_113918.1 53804479 3102429 complement(1552671..1553399) 1 NC_002977.6 identified by similarity to SP:P15027; match to protein family HMM PF02565; match to protein family HMM TIGR00613; DNA repair protein RecO 1553399 recO 3102429 recO Methylococcus capsulatus str. Bath DNA repair protein RecO YP_113918.1 1552671 R 243233 CDS YP_113919.1 53804478 3104732 complement(1553415..1554296) 1 NC_002977.6 identified by similarity to SP:P06616; match to protein family HMM PF07650; match to protein family HMM TIGR00231; match to protein family HMM TIGR00436; match to protein family HMM TIGR00650; GTP-binding protein Era 1554296 era 3104732 era Methylococcus capsulatus str. Bath GTP-binding protein Era YP_113919.1 1553415 R 243233 CDS YP_113920.1 53804477 3102357 complement(1554293..1554985) 1 NC_002977.6 identified by similarity to SP:P05797; match to protein family HMM PF00035; match to protein family HMM PF00636; match to protein family HMM TIGR02191; ribonuclease III 1554985 rnc 3102357 rnc Methylococcus capsulatus str. Bath ribonuclease III YP_113920.1 1554293 R 243233 CDS YP_113921.1 53804476 3102356 complement(1554982..1555359) 1 NC_002977.6 hypothetical protein 1555359 3102356 MCA1464 Methylococcus capsulatus str. Bath hypothetical protein YP_113921.1 1554982 R 243233 CDS YP_113922.1 53804475 3104582 complement(1555363..1556151) 1 NC_002977.6 identified by similarity to SP:P00803; match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 1556151 lepB 3104582 lepB Methylococcus capsulatus str. Bath signal peptidase I YP_113922.1 1555363 R 243233 CDS YP_113923.1 53804474 3103401 complement(1556166..1557971) 1 NC_002977.6 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1557971 lepA 3103401 lepA Methylococcus capsulatus str. Bath GTP-binding protein LepA YP_113923.1 1556166 R 243233 CDS YP_113924.1 53804465 3102844 complement(1557968..1559389) 1 NC_002977.6 identified by similarity to GP:1345104; match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; serine protease MucD 1559389 3102844 MCA1467 Methylococcus capsulatus str. Bath serine protease MucD YP_113924.1 1557968 R 243233 CDS YP_113925.1 53804464 3102843 complement(1559448..1559888) 1 NC_002977.6 identified by similarity to GP:1345103; match to protein family HMM PF04246; sigma factor regulator MucC 1559888 mucC 3102843 mucC Methylococcus capsulatus str. Bath sigma factor regulator MucC YP_113925.1 1559448 R 243233 CDS YP_113926.1 53804463 3102234 complement(1559900..1560898) 1 NC_002977.6 identified by similarity to SP:P46186; sigma-E factor regulatory protein 1560898 3102234 MCA1469 Methylococcus capsulatus str. Bath sigma-E factor regulatory protein YP_113926.1 1559900 R 243233 CDS YP_113927.1 53804462 3102632 complement(1560917..1561423) 1 NC_002977.6 identified by similarity to GP:18496604; hypothetical protein 1561423 3102632 MCA1470 Methylococcus capsulatus str. Bath hypothetical protein YP_113927.1 1560917 R 243233 CDS YP_113928.1 53804461 3102631 complement(1561445..1562023) 1 NC_002977.6 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 1562023 rpoE 3102631 rpoE Methylococcus capsulatus str. Bath RNA polymerase sigma factor RpoE YP_113928.1 1561445 R 243233 CDS YP_113929.1 53804460 3104515 1562203..1563804 1 NC_002977.6 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 1563804 nadB 3104515 nadB Methylococcus capsulatus str. Bath L-aspartate oxidase YP_113929.1 1562203 D 243233 CDS YP_113930.1 53804459 3104186 complement(1563816..1565300) 1 NC_002977.6 identified by similarity to SP:P29851; match to protein family HMM PF02446; match to protein family HMM TIGR00217; 4-alpha-glucanotransferase 1565300 malQ 3104186 malQ Methylococcus capsulatus str. Bath 4-alpha-glucanotransferase YP_113930.1 1563816 R 243233 CDS YP_113931.1 53804458 3104185 complement(1565373..1566647) 1 NC_002977.6 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 1566647 glgC 3104185 glgC Methylococcus capsulatus str. Bath glucose-1-phosphate adenylyltransferase YP_113931.1 1565373 R 243233 CDS YP_113932.1 53804457 3103570 1566799..1569021 1 NC_002977.6 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 1569021 glgB 3103570 glgB Methylococcus capsulatus str. Bath glycogen branching protein YP_113932.1 1566799 D 243233 CDS YP_113933.1 53804456 3104785 1569018..1570499 1 NC_002977.6 identified by similarity to SP:P08323; match to protein family HMM PF00534; match to protein family HMM TIGR02095; glycogen synthase 1570499 glgA 3104785 glgA Methylococcus capsulatus str. Bath glycogen synthase YP_113933.1 1569018 D 243233 CDS YP_113934.1 53804455 3104784 complement(1570515..1571117) 1 NC_002977.6 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052; hypothetical protein 1571117 3104784 MCA1477 Methylococcus capsulatus str. Bath hypothetical protein YP_113934.1 1570515 R 243233 CDS YP_113935.1 53804454 3104665 complement(1571117..1572100) 1 NC_002977.6 identified by similarity to SP:O34525; match to protein family HMM PF01343; match to protein family HMM TIGR00706; signal peptide peptidase SppA 1572100 3104665 MCA1478 Methylococcus capsulatus str. Bath signal peptide peptidase SppA YP_113935.1 1571117 R 243233 CDS YP_113936.1 53804453 3105000 complement(1572164..1573114) 1 NC_002977.6 identified by similarity to SP:P23851; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase C 1573114 rluC 3105000 rluC Methylococcus capsulatus str. Bath ribosomal large subunit pseudouridine synthase C YP_113936.1 1572164 R 243233 CDS YP_113937.1 53804452 3104999 1573384..1573845 1 NC_002977.6 hypothetical protein 1573845 3104999 MCA1480 Methylococcus capsulatus str. Bath hypothetical protein YP_113937.1 1573384 D 243233 CDS YP_113938.1 53804451 3103735 1573769..1576426 1 NC_002977.6 identified by similarity to SP:P21513; match to protein family HMM PF00575; match to protein family HMM TIGR00757; ribonuclease E 1576426 rne 3103735 rne Methylococcus capsulatus str. Bath ribonuclease E YP_113938.1 1573769 D 243233 CDS YP_113939.1 53804450 3104911 complement(1576525..1580409) 1 NC_002977.6 identified by similarity to SP:P43329; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM TIGR01967; ATP-dependent helicase HrpA 1580409 3104911 MCA1482 Methylococcus capsulatus str. Bath ATP-dependent helicase HrpA YP_113939.1 1576525 R 243233 CDS YP_113940.1 53804440 3103613 complement(1580416..1581180) 1 NC_002977.6 identified by similarity to SP:P55475; match to protein family HMM PF01061; match to protein family HMM TIGR01291; ABC transporter permease NodJ 1581180 3103613 MCA1483 Methylococcus capsulatus str. Bath ABC transporter permease NodJ YP_113940.1 1580416 R 243233 CDS YP_113941.1 53804439 3102232 complement(1581173..1582102) 1 NC_002977.6 identified by similarity to SP:P72335; match to protein family HMM PF00005; nodulation ABC transporter NodI 1582102 nodI 3102232 nodI Methylococcus capsulatus str. Bath nodulation ABC transporter NodI YP_113941.1 1581173 R 243233 CDS YP_113942.1 53804438 3104194 complement(1582211..1582930) 1 NC_002977.6 identified by similarity to GP:19887278; match to protein family HMM PF01887; hypothetical protein 1582930 3104194 MCA1485 Methylococcus capsulatus str. Bath hypothetical protein YP_113942.1 1582211 R 243233 CDS YP_113943.1 53804437 3104193 complement(1582949..1583713) 1 NC_002977.6 identified by similarity to SP:P27857; match to protein family HMM PF00902; match to protein family HMM TIGR00945; Sec-independent protein translocase TatC 1583713 tatC 3104193 tatC Methylococcus capsulatus str. Bath Sec-independent protein translocase TatC YP_113943.1 1582949 R 243233 CDS YP_113944.1 53804436 3102314 complement(1583736..1584050) 1 NC_002977.6 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01410; Sec-independent protein translocase TatB 1584050 tatB 3102314 tatB Methylococcus capsulatus str. Bath Sec-independent protein translocase TatB YP_113944.1 1583736 R 243233 CDS YP_113945.1 53804435 3103552 complement(1584058..1584270) 1 NC_002977.6 identified by similarity to GP:12831974; match to protein family HMM PF02416; match to protein family HMM TIGR01411; Sec-independent protein translocase TatA 1584270 tatA 3103552 tatA Methylococcus capsulatus str. Bath Sec-independent protein translocase TatA YP_113945.1 1584058 R 243233 CDS YP_113946.1 53804434 3103551 complement(1584294..1584698) 1 NC_002977.6 hypothetical protein 1584698 3103551 MCA1489 Methylococcus capsulatus str. Bath hypothetical protein YP_113946.1 1584294 R 243233 CDS YP_113947.1 53804425 3104489 complement(1584731..1585546) 1 NC_002977.6 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 1585546 dapD 3104489 dapD Methylococcus capsulatus str. Bath 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_113947.1 1584731 R 243233 CDS YP_113948.1 53804424 3103795 complement(1585559..1586755) 1 NC_002977.6 catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase 1586755 3103795 MCA1491 Methylococcus capsulatus str. Bath succinyldiaminopimelate transaminase YP_113948.1 1585559 R 243233 CDS YP_113949.1 53804423 3102990 complement(1586849..1588114) 1 NC_002977.6 identified by match to protein family HMM PF07586; match to protein family HMM TIGR01409; Tat pathway signal sequence domain-containing protein 1588114 3102990 MCA1492 Methylococcus capsulatus str. Bath Tat pathway signal sequence domain-containing protein YP_113949.1 1586849 R 243233 CDS YP_113950.1 53804422 3102989 complement(1588125..1591292) 1 NC_002977.6 identified by match to protein family HMM PF00041; match to protein family HMM PF00553; match to protein family HMM PF07631; match to protein family HMM PF07637; cellulose-binding domain-containing protein 1591292 3102989 MCA1493 Methylococcus capsulatus str. Bath cellulose-binding domain-containing protein YP_113950.1 1588125 R 243233 CDS YP_113951.1 53804421 3103567 1592110..1593477 1 NC_002977.6 identified by match to protein family HMM PF01494; oxidoreductase, FAD-binding 1593477 3103567 MCA1494 Methylococcus capsulatus str. Bath oxidoreductase, FAD-binding YP_113951.1 1592110 D 243233 CDS YP_113952.1 53804420 3102567 1593489..1594496 1 NC_002977.6 identified by similarity to GP:2624947; hypothetical protein 1594496 3102567 MCA1495 Methylococcus capsulatus str. Bath hypothetical protein YP_113952.1 1593489 D 243233 CDS YP_113953.1 53804419 3102566 1594537..1595289 1 NC_002977.6 identified by match to protein family HMM PF01553; acyltransferase 1595289 3102566 MCA1496 Methylococcus capsulatus str. Bath acyltransferase YP_113953.1 1594537 D 243233 CDS YP_113954.1 53804409 3102177 1595293..1596060 1 NC_002977.6 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 1596060 3102177 MCA1497 Methylococcus capsulatus str. Bath glycosyl transferase group 2 family protein YP_113954.1 1595293 D 243233 CDS YP_113955.1 53804410 3104820 1596078..1596572 1 NC_002977.6 identified by match to protein family HMM PF00383; zinc-binding domain-containing protein 1596572 3104820 MCA1498 Methylococcus capsulatus str. Bath zinc-binding domain-containing protein YP_113955.1 1596078 D 243233 CDS YP_113956.1 53804408 3102181 complement(1596599..1597807) 1 NC_002977.6 identified by similarity to SP:P52074; match to protein family HMM PF00037; match to protein family HMM PF02754; glycolate oxidase iron-sulfur subunit 1597807 glcF 3102181 glcF Methylococcus capsulatus str. Bath glycolate oxidase iron-sulfur subunit YP_113956.1 1596599 R 243233 CDS YP_113957.1 53804407 3102180 complement(1597808..1598869) 1 NC_002977.6 identified by similarity to SP:P52073; match to protein family HMM PF01565; glycolate oxidase FAD binding subunit 1598869 glcE 3102180 glcE Methylococcus capsulatus str. Bath glycolate oxidase FAD binding subunit YP_113957.1 1597808 R 243233 CDS YP_113958.1 53804406 3103186 complement(1598878..1600332) 1 NC_002977.6 identified by similarity to SP:P52075; match to protein family HMM PF01565; match to protein family HMM PF02913; glycolate oxidase subunit GlcD 1600332 glcD 3103186 glcD Methylococcus capsulatus str. Bath glycolate oxidase subunit GlcD YP_113958.1 1598878 R 243233 CDS YP_113959.1 53804405 3102650 complement(1600350..1601063) 1 NC_002977.6 identified by match to protein family HMM PF01694; rhomboid family protein 1601063 3102650 MCA1502 Methylococcus capsulatus str. Bath rhomboid family protein YP_113959.1 1600350 R 243233 CDS YP_113960.1 53804404 3102649 complement(1601060..1601962) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04934; hypothetical protein 1601962 3102649 MCA1503 Methylococcus capsulatus str. Bath hypothetical protein YP_113960.1 1601060 R 243233 CDS YP_113961.1 53804403 3102610 1602141..1603400 1 NC_002977.6 identified by similarity to GP:7381242; match to protein family HMM PF00174; match to protein family HMM PF03404; match to protein family HMM TIGR01409; sulfite oxidase SoxC 1603400 3102610 MCA1504 Methylococcus capsulatus str. Bath sulfite oxidase SoxC YP_113961.1 1602141 D 243233 CDS YP_113962.1 53804393 3102464 1603943..1605637 1 NC_002977.6 hypothetical protein 1605637 3102464 MCA1506 Methylococcus capsulatus str. Bath hypothetical protein YP_113962.1 1603943 D 243233 CDS YP_113963.1 53804392 3102654 complement(1606453..1606734) 1 NC_002977.6 hypothetical protein 1606734 3102654 MCA1507 Methylococcus capsulatus str. Bath hypothetical protein YP_113963.1 1606453 R 243233 CDS YP_113964.1 53804391 3102653 1606779..1607831 1 NC_002977.6 identified by match to protein family HMM PF00535; glycosyl transferase family protein 1607831 3102653 MCA1508 Methylococcus capsulatus str. Bath glycosyl transferase family protein YP_113964.1 1606779 D 243233 CDS YP_113965.1 53804390 3103131 1607847..1609946 1 NC_002977.6 identified by match to protein family HMM PF00515; hypothetical protein 1609946 3103131 MCA1509 Methylococcus capsulatus str. Bath hypothetical protein YP_113965.1 1607847 D 243233 CDS YP_113966.1 53804389 3103894 complement(1609935..1610351) 1 NC_002977.6 identified by similarity to SP:P05431; match to protein family HMM PF00114; fimbrial protein 1610351 3103894 MCA1510 Methylococcus capsulatus str. Bath fimbrial protein YP_113966.1 1609935 R 243233 CDS YP_113967.1 53804388 3103893 complement(1610449..1612026) 1 NC_002977.6 identified by match to protein family HMM PF00515; hypothetical protein 1612026 3103893 MCA1511 Methylococcus capsulatus str. Bath hypothetical protein YP_113967.1 1610449 R 243233 CDS YP_113968.1 53804387 3103634 complement(1612101..1613753) 1 NC_002977.6 identified by similarity to SP:P21296; match to protein family HMM PF00515; hypothetical protein 1613753 3103634 MCA1512 Methylococcus capsulatus str. Bath hypothetical protein YP_113968.1 1612101 R 243233 CDS YP_113969.1 53804386 3102847 complement(1613878..1614576) 1 NC_002977.6 identified by similarity to OMNI:NTL01SMB00546; hypothetical protein 1614576 3102847 MCA1513 Methylococcus capsulatus str. Bath hypothetical protein YP_113969.1 1613878 R 243233 CDS YP_113970.1 53804373 3104161 complement(1614981..1616081) 1 NC_002977.6 identified by match to protein family HMM PF01609; ISMca1, transposase 1616081 3104161 MCA1514 Methylococcus capsulatus str. Bath ISMca1, transposase YP_113970.1 1614981 R 243233 CDS YP_113971.1 53804372 3104160 complement(1616232..1617839) 1 NC_002977.6 identified by similarity to GP:17129902; hypothetical protein 1617839 3104160 MCA1515 Methylococcus capsulatus str. Bath hypothetical protein YP_113971.1 1616232 R 243233 CDS YP_113972.1 53804371 3104968 complement(1617829..1618911) 1 NC_002977.6 This gene is interrupted by an IS element.identified by similarity to GP:17430189; match to protein family HMM PF00515; hypothetical protein 1618911 3104968 MCA1516 Methylococcus capsulatus str. Bath hypothetical protein YP_113972.1 1617829 R 243233 CDS YP_113973.1 53804370 3104253 1619059..1620159 1 NC_002977.6 identified by match to protein family HMM PF01609; ISMca1, transposase 1620159 3104253 MCA1517 Methylococcus capsulatus str. Bath ISMca1, transposase YP_113973.1 1619059 D 243233 CDS YP_113974.1 53804369 3104252 complement(1620150..1620926) 1 NC_002977.6 This gene is interrupted by an IS element.identified by match to protein family HMM PF00515; hypothetical protein 1620926 3104252 MCA1518 Methylococcus capsulatus str. Bath hypothetical protein YP_113974.1 1620150 R 243233 CDS YP_113975.1 53804368 3102146 1621535..1623274 1 NC_002977.6 identified by match to protein family HMM PF02254; sodium/hydrogen exchanger family protein 1623274 3102146 MCA1519 Methylococcus capsulatus str. Bath sodium/hydrogen exchanger family protein YP_113975.1 1621535 D 243233 CDS YP_113976.1 53804367 3104637 1623283..1623480 1 NC_002977.6 hypothetical protein 1623480 3104637 MCA1520 Methylococcus capsulatus str. Bath hypothetical protein YP_113976.1 1623283 D 243233 CDS YP_113977.1 53804195 3103891 complement(1623477..1624823) 1 NC_002977.6 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator family transporter 1624823 3103891 MCA1521 Methylococcus capsulatus str. Bath major facilitator family transporter YP_113977.1 1623477 R 243233 CDS YP_113978.1 53804194 3103890 1624934..1625743 1 NC_002977.6 identified by similarity to SP:P37695; match to protein family HMM PF01648; 4'-phosphopantetheinyl transferase 1625743 3103890 MCA1522 Methylococcus capsulatus str. Bath 4'-phosphopantetheinyl transferase YP_113978.1 1624934 D 243233 CDS YP_113979.1 53804193 3102128 1625835..1626044 1 NC_002977.6 identified by similarity to SP:P41016; match to protein family HMM PF00313; cold shock protein 1626044 3102128 MCA1523 Methylococcus capsulatus str. Bath cold shock protein YP_113979.1 1625835 D 243233 CDS YP_113980.1 53804192 3102127 1626150..1626599 1 NC_002977.6 hypothetical protein 1626599 3102127 MCA1524 Methylococcus capsulatus str. Bath hypothetical protein YP_113980.1 1626150 D 243233 CDS YP_113981.1 53804191 3102636 1626685..1627713 1 NC_002977.6 identified by similarity to SP:P29901; moxR protein 1627713 3102636 MCA1525 Methylococcus capsulatus str. Bath moxR protein YP_113981.1 1626685 D 243233 CDS YP_113982.1 53804182 3104669 1627710..1628549 1 NC_002977.6 identified by similarity to OMNI:BB0175; hypothetical protein 1628549 3104669 MCA1526 Methylococcus capsulatus str. Bath hypothetical protein YP_113982.1 1627710 D 243233 CDS YP_113983.1 53804181 3102188 1629451..1630428 1 NC_002977.6 identified by similarity to GP:1164996; MxaC protein 1630428 3102188 MCA1528 Methylococcus capsulatus str. Bath MxaC protein YP_113983.1 1629451 D 243233 CDS YP_113984.1 53804180 3104114 1630422..1630976 1 NC_002977.6 identified by similarity to GP:2828246; MxaK protein 1630976 3104114 MCA1529 Methylococcus capsulatus str. Bath MxaK protein YP_113984.1 1630422 D 243233 CDS YP_113985.1 53804179 3104113 1630973..1631899 1 NC_002977.6 identified by similarity to GP:773183; MxaL protein 1631899 3104113 MCA1530 Methylococcus capsulatus str. Bath MxaL protein YP_113985.1 1630973 D 243233 CDS YP_113986.1 53804178 3102838 1631886..1632101 1 NC_002977.6 identified by similarity to OMNI:DR2086; hypothetical protein 1632101 3102838 MCA1531 Methylococcus capsulatus str. Bath hypothetical protein YP_113986.1 1631886 D 243233 CDS YP_113987.1 53804177 3102837 1632163..1632858 1 NC_002977.6 identified by match to protein family HMM PF02390; match to protein family HMM TIGR00091; tRNA (guanine-N(7)-)-methyltransferase 1632858 trmB 3102837 trmB Methylococcus capsulatus str. Bath tRNA (guanine-N(7)-)-methyltransferase YP_113987.1 1632163 D 243233 CDS YP_113988.1 53804176 3102613 complement(1632843..1635740) 1 NC_002977.6 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein 1635740 3102613 MCA1533 Methylococcus capsulatus str. Bath sensory box protein YP_113988.1 1632843 R 243233 CDS YP_113989.1 53804167 3102210 complement(1635875..1636453) 1 NC_002977.6 identified by match to protein family HMM PF02325; hypothetical protein 1636453 3102210 MCA1534 Methylococcus capsulatus str. Bath hypothetical protein YP_113989.1 1635875 R 243233 CDS YP_113990.1 53804166 3102586 complement(1636457..1637281) 1 NC_002977.6 identified by similarity to SP:P22008; match to protein family HMM PF01089; match to protein family HMM TIGR00112; pyrroline-5-carboxylate reductase 1637281 proC 3102586 proC Methylococcus capsulatus str. Bath pyrroline-5-carboxylate reductase YP_113990.1 1636457 R 243233 CDS YP_113991.1 53804165 3102585 complement(1637352..1638041) 1 NC_002977.6 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein 1638041 3102585 MCA1536 Methylococcus capsulatus str. Bath hypothetical protein YP_113991.1 1637352 R 243233 CDS YP_113992.1 53804164 3103065 1638097..1639131 1 NC_002977.6 identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching motility protein PilT 1639131 pilT 3103065 pilT Methylococcus capsulatus str. Bath twitching motility protein PilT YP_113992.1 1638097 D 243233 CDS YP_113993.1 53804163 3103064 1639147..1640265 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00397; match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching motility protein PilU 1640265 pilU 3103064 pilU Methylococcus capsulatus str. Bath twitching motility protein PilU YP_113993.1 1639147 D 243233 CDS YP_113994.1 53804162 3104919 complement(1640804..1642597) 1 NC_002977.6 identified by similarity to OMNI:NTL01PM1830; hypothetical protein 1642597 3104919 MCA1539 Methylococcus capsulatus str. Bath hypothetical protein YP_113994.1 1640804 R 243233 CDS YP_113995.1 53804161 3104918 complement(1642608..1643030) 1 NC_002977.6 hypothetical protein 1643030 3104918 MCA1540 Methylococcus capsulatus str. Bath hypothetical protein YP_113995.1 1642608 R 243233 CDS YP_113996.1 53804160 3102852 complement(1643024..1643275) 1 NC_002977.6 identified by similarity to GP:9106024; match to protein family HMM PF03937; hypothetical protein 1643275 3102852 MCA1541 Methylococcus capsulatus str. Bath hypothetical protein YP_113996.1 1643024 R 243233 CDS YP_113997.1 53804152 3104200 complement(1643272..1644054) 1 NC_002977.6 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 1644054 sdhB 3104200 sdhB Methylococcus capsulatus str. Bath succinate dehydrogenase iron-sulfur subunit YP_113997.1 1643272 R 243233 CDS YP_113998.1 53804151 3104199 complement(1644087..1645496) 1 NC_002977.6 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1645496 fumC 3104199 fumC Methylococcus capsulatus str. Bath fumarate hydratase YP_113998.1 1644087 R 243233 CDS YP_113999.1 53804150 3104428 complement(1645518..1645754) 1 NC_002977.6 identified by similarity to GP:9949137; hypothetical protein 1645754 3104428 MCA1544 Methylococcus capsulatus str. Bath hypothetical protein YP_113999.1 1645518 R 243233 CDS YP_114000.1 53804149 3104427 complement(1645744..1649457) 1 NC_002977.6 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 1649457 metH 3104427 metH Methylococcus capsulatus str. Bath B12-dependent methionine synthase YP_114000.1 1645744 R 243233 CDS YP_114001.1 53804148 3104521 1649662..1650054 1 NC_002977.6 hypothetical protein 1650054 3104521 MCA1546 Methylococcus capsulatus str. Bath hypothetical protein YP_114001.1 1649662 D 243233 CDS YP_114002.1 53804147 3104520 complement(1650041..1650778) 1 NC_002977.6 hypothetical protein 1650778 3104520 MCA1547 Methylococcus capsulatus str. Bath hypothetical protein YP_114002.1 1650041 R 243233 CDS YP_114003.1 53804146 3104981 1650853..1651269 1 NC_002977.6 identified by similarity to SP:P10446; match to protein family HMM PF01127; succinate dehydrogenase, cytochrome b556 subunit 1651269 3104981 MCA1548 Methylococcus capsulatus str. Bath succinate dehydrogenase, cytochrome b556 subunit YP_114003.1 1650853 D 243233 CDS YP_114004.1 53804138 3104442 1651275..1651655 1 NC_002977.6 identified by similarity to SP:P10445; match to protein family HMM PF01127; succinate dehydrogenase, hydrophobic membrane anchor protein 1651655 3104442 MCA1549 Methylococcus capsulatus str. Bath succinate dehydrogenase, hydrophobic membrane anchor protein YP_114004.1 1651275 D 243233 CDS YP_114005.1 53804137 3104441 1651661..1653448 1 NC_002977.6 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1653448 sdhA 3104441 sdhA Methylococcus capsulatus str. Bath succinate dehydrogenase flavoprotein subunit YP_114005.1 1651661 D 243233 CDS YP_114006.1 53804136 3105059 1653611..1654150 1 NC_002977.6 hypothetical protein 1654150 3105059 MCA1551 Methylococcus capsulatus str. Bath hypothetical protein YP_114006.1 1653611 D 243233 CDS YP_114007.1 53804135 3105058 1654153..1654488 1 NC_002977.6 identified by similarity to OMNI:NTL01SM00306; match to protein family HMM PF03960; match to protein family HMM TIGR01617; ArsC family protein 1654488 3105058 MCA1552 Methylococcus capsulatus str. Bath ArsC family protein YP_114007.1 1654153 D 243233 CDS YP_114008.1 53804134 3103053 1654485..1655618 1 NC_002977.6 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 1655618 dapE 3103053 dapE Methylococcus capsulatus str. Bath succinyl-diaminopimelate desuccinylase YP_114008.1 1654485 D 243233 CDS YP_114009.1 53804133 3103052 1655747..1655851 1 NC_002977.6 hypothetical protein 1655851 3103052 MCA1554 Methylococcus capsulatus str. Bath hypothetical protein YP_114009.1 1655747 D 243233 CDS YP_114010.1 53804132 3102214 1655913..1656863 1 NC_002977.6 identified by similarity to GP:6009981; match to protein family HMM PF00581; mercaptopyruvate sulfurtransferase 1656863 sseA 3102214 sseA Methylococcus capsulatus str. Bath mercaptopyruvate sulfurtransferase YP_114010.1 1655913 D 243233 CDS YP_114011.1 53804131 3102213 1656884..1658260 1 NC_002977.6 produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 1658260 atpD 3102213 atpD Methylococcus capsulatus str. Bath ATP synthase F0F1 subunit beta YP_114011.1 1656884 D 243233 CDS YP_114012.1 53804122 3102438 1658257..1658664 1 NC_002977.6 ATP synthase F1 subunit epsilon 1658664 3102438 MCA1557 Methylococcus capsulatus str. Bath ATP synthase F1 subunit epsilon YP_114012.1 1658257 D 243233 CDS YP_114013.1 53804121 3102437 complement(1659314..1659940) 1 NC_002977.6 identified by similarity to GP:4731342; hypothetical protein 1659940 3102437 MCA1559 Methylococcus capsulatus str. Bath hypothetical protein YP_114013.1 1659314 R 243233 CDS YP_114014.1 53804120 3102893 1660697..1661635 1 NC_002977.6 identified by similarity to OMNI:NTL03PA03672; match to protein family HMM PF00005; ABC transporter ATP-binding protein 1661635 3102893 MCA1561 Methylococcus capsulatus str. Bath ABC transporter ATP-binding protein YP_114014.1 1660697 D 243233 CDS YP_114015.1 53804119 3102892 1661632..1662366 1 NC_002977.6 ABC transporter permease 1662366 3102892 MCA1562 Methylococcus capsulatus str. Bath ABC transporter permease YP_114015.1 1661632 D 243233 CDS YP_114016.1 53804118 3103130 1662380..1664248 1 NC_002977.6 identified by similarity to OMNI:NTL03PA03670; hypothetical protein 1664248 3103130 MCA1563 Methylococcus capsulatus str. Bath hypothetical protein YP_114016.1 1662380 D 243233 CDS YP_114017.1 53804117 3103129 1664261..1665421 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04040; hypothetical protein 1665421 3103129 MCA1564 Methylococcus capsulatus str. Bath hypothetical protein YP_114017.1 1664261 D 243233 CDS YP_114018.1 53804116 3104191 1665545..1665967 1 NC_002977.6 identified by similarity to SP:P17724; hypothetical protein 1665967 3104191 MCA1565 Methylococcus capsulatus str. Bath hypothetical protein YP_114018.1 1665545 D 243233 CDS YP_114019.1 53804115 3104190 complement(1666411..1667676) 1 NC_002977.6 identified by similarity to SP:P12281; match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis MoeA protein 1667676 moeA 3104190 moeA Methylococcus capsulatus str. Bath molybdopterin biosynthesis MoeA protein YP_114019.1 1666411 R 243233 CDS YP_114020.1 53804106 3102621 complement(1667774..1668037) 1 NC_002977.6 hypothetical protein 1668037 3102621 MCA1568 Methylococcus capsulatus str. Bath hypothetical protein YP_114020.1 1667774 R 243233 CDS YP_114021.1 53804105 3102620 complement(1668628..1670160) 1 NC_002977.6 identified by similarity to SP:P94547; match to protein family HMM PF00501; long-chain fatty acid CoA ligase 1670160 3102620 MCA1569 Methylococcus capsulatus str. Bath long-chain fatty acid CoA ligase YP_114021.1 1668628 R 243233 CDS YP_114022.1 53804104 3104335 1670151..1670258 1 NC_002977.6 hypothetical protein 1670258 3104335 MCA1570 Methylococcus capsulatus str. Bath hypothetical protein YP_114022.1 1670151 D 243233 CDS YP_114023.1 53804103 3104334 1670779..1671048 1 NC_002977.6 hypothetical protein 1671048 3104334 MCA1573 Methylococcus capsulatus str. Bath hypothetical protein YP_114023.1 1670779 D 243233 CDS YP_114024.1 53804102 3102628 1671149..1672648 1 NC_002977.6 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; DEAD/DEAH box helicase 1672648 3102628 MCA1574 Methylococcus capsulatus str. Bath DEAD/DEAH box helicase YP_114024.1 1671149 D 243233 CDS YP_114025.1 53804101 3102627 complement(1672663..1673730) 1 NC_002977.6 identified by similarity to GP:17739984; match to protein family HMM PF00107; alcohol dehydrogenase 1673730 3102627 MCA1575 Methylococcus capsulatus str. Bath alcohol dehydrogenase YP_114025.1 1672663 R 243233 CDS YP_114026.1 53804100 3104259 1673971..1676112 1 NC_002977.6 identified by similarity to SP:P76577; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF06832; match to protein family HMM TIGR02073; penicillin-binding protein 1676112 3104259 MCA1576 Methylococcus capsulatus str. Bath penicillin-binding protein YP_114026.1 1673971 D 243233 CDS YP_114027.1 53804099 3104258 complement(1676119..1676694) 1 NC_002977.6 hypothetical protein 1676694 3104258 MCA1577 Methylococcus capsulatus str. Bath hypothetical protein YP_114027.1 1676119 R 243233 CDS YP_114028.1 53804090 3105068 complement(1676709..1678061) 1 NC_002977.6 identified by similarity to SP:Q08638; match to protein family HMM PF00232; beta-glucosidase 1678061 bgl 3105068 bgl Methylococcus capsulatus str. Bath beta-glucosidase YP_114028.1 1676709 R 243233 CDS YP_114029.1 53804089 3105067 complement(1678089..1682327) 1 NC_002977.6 identified by similarity to SP:P30015; match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase 1682327 3105067 MCA1579 Methylococcus capsulatus str. Bath DEAD/DEAH box helicase YP_114029.1 1678089 R 243233 CDS YP_114030.1 53804088 3103488 complement(1682645..1683745) 1 NC_002977.6 identified by match to protein family HMM PF01609; ISMca1, transposase 1683745 3103488 MCA1580 Methylococcus capsulatus str. Bath ISMca1, transposase YP_114030.1 1682645 R 243233 CDS YP_114031.1 53804087 3103487 1683735..1685036 1 NC_002977.6 identified by match to protein family HMM PF00909; ammonium transporter 1685036 3103487 MCA1581 Methylococcus capsulatus str. Bath ammonium transporter YP_114031.1 1683735 D 243233 CDS YP_114032.1 53804086 3104741 complement(1685212..1685442) 1 NC_002977.6 hypothetical protein 1685442 3104741 MCA1582 Methylococcus capsulatus str. Bath hypothetical protein YP_114032.1 1685212 R 243233 CDS YP_114033.1 53804085 3104740 1685536..1686954 1 NC_002977.6 identified by match to protein family HMM PF00990; match to protein family HMM PF05231; match to protein family HMM TIGR00254; diguanylate cyclase 1686954 3104740 MCA1583 Methylococcus capsulatus str. Bath diguanylate cyclase YP_114033.1 1685536 D 243233 CDS YP_114034.1 53804084 3102716 1686957..1687292 1 NC_002977.6 hypothetical protein 1687292 3102716 MCA1584 Methylococcus capsulatus str. Bath hypothetical protein YP_114034.1 1686957 D 243233 CDS YP_114035.1 53804083 3102715 complement(1687294..1689645) 1 NC_002977.6 identified by similarity to GP:5257178; fatty acid cis/trans isomerase 1689645 3102715 MCA1585 Methylococcus capsulatus str. Bath fatty acid cis/trans isomerase YP_114035.1 1687294 R 243233 CDS YP_114036.1 53804074 3104909 1689904..1693314 1 NC_002977.6 identified by similarity to GP:15978700; hypothetical protein 1693314 3104909 MCA1586 Methylococcus capsulatus str. Bath hypothetical protein YP_114036.1 1689904 D 243233 CDS YP_114037.1 53804073 3104908 1693459..1695894 1 NC_002977.6 identified by similarity to SP:Q9AEM9; match to protein family HMM PF03894; phosphoketolase 1695894 3104908 MCA1587 Methylococcus capsulatus str. Bath phosphoketolase YP_114037.1 1693459 D 243233 CDS YP_114038.1 53804072 3102584 1695956..1696255 1 NC_002977.6 hypothetical protein 1696255 3102584 MCA1588 Methylococcus capsulatus str. Bath hypothetical protein YP_114038.1 1695956 D 243233 CDS YP_114039.1 53804071 3102583 1696262..1697446 1 NC_002977.6 identified by similarity to SP:P37877; match to protein family HMM PF00871; match to protein family HMM TIGR00016; acetate kinase 1697446 ackA 3102583 ackA Methylococcus capsulatus str. Bath acetate kinase YP_114039.1 1696262 D 243233 CDS YP_114040.1 53804070 3104942 1697487..1698032 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00938; hypothetical protein 1698032 3104942 MCA1590 Methylococcus capsulatus str. Bath hypothetical protein YP_114040.1 1697487 D 243233 CDS YP_114041.1 53804069 3104941 1698123..1698269 1 NC_002977.6 hypothetical protein 1698269 3104941 MCA1591 Methylococcus capsulatus str. Bath hypothetical protein YP_114041.1 1698123 D 243233 CDS YP_114042.1 53804068 3102819 complement(1698383..1699021) 1 NC_002977.6 identified by similarity to SP:P39219; match to protein family HMM PF00849; ribosomal large subunit pseudouridine synthase A 1699021 rluA 3102819 rluA Methylococcus capsulatus str. Bath ribosomal large subunit pseudouridine synthase A YP_114042.1 1698383 R 243233 CDS YP_114043.1 53804067 3102818 complement(1699023..1699613) 1 NC_002977.6 identified by match to protein family HMM PF00565; nuclease-like protein 1699613 3102818 MCA1593 Methylococcus capsulatus str. Bath nuclease-like protein YP_114043.1 1699023 R 243233 CDS YP_114044.1 53804057 3102304 complement(1699682..1699852) 1 NC_002977.6 hypothetical protein 1699852 3102304 MCA1594 Methylococcus capsulatus str. Bath hypothetical protein YP_114044.1 1699682 R 243233 CDS YP_114045.1 53804056 3102709 1699953..1701515 1 NC_002977.6 identified by similarity to GP:19716262; match to protein family HMM PF02321; match to protein family HMM TIGR01845; multidrug efflux system outer membrane subunit 1701515 3102709 MCA1595 Methylococcus capsulatus str. Bath multidrug efflux system outer membrane subunit YP_114045.1 1699953 D 243233 CDS YP_114046.1 53804055 3102708 1701580..1702695 1 NC_002977.6 identified by similarity to OMNI:NTL03PA02493; match to protein family HMM PF00529; match to protein family HMM TIGR01730; HlyD family multidrug efflux protein 1702695 3102708 MCA1596 Methylococcus capsulatus str. Bath HlyD family multidrug efflux protein YP_114046.1 1701580 D 243233 CDS YP_114047.1 53804054 3102203 1702692..1705859 1 NC_002977.6 identified by similarity to GP:1707645; match to protein family HMM TIGR00915; multidrug efflux transporter MexF 1705859 3102203 MCA1597 Methylococcus capsulatus str. Bath multidrug efflux transporter MexF YP_114047.1 1702692 D 243233 CDS YP_114048.1 53804358 3103411 1705856..1706575 1 NC_002977.6 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1706575 3103411 MCA1598 Methylococcus capsulatus str. Bath TetR family transcriptional regulator YP_114048.1 1705856 D 243233 CDS YP_114049.1 53804357 3103410 1706633..1708147 1 NC_002977.6 identified by similarity to GP:1345104; match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; serine protease MucD 1708147 3103410 MCA1599 Methylococcus capsulatus str. Bath serine protease MucD YP_114049.1 1706633 D 243233 CDS YP_114050.1 53804355 3102409 1708260..1708496 1 NC_002977.6 identified by similarity to SP:P24191; match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase assembly chaperone HypC/HupF 1708496 hypC 3102409 hypC Methylococcus capsulatus str. Bath hydrogenase assembly chaperone HypC/HupF YP_114050.1 1708260 D 243233 CDS YP_114051.1 53804356 3103243 1708489..1708842 1 NC_002977.6 identified by match to protein family HMM PF01155; match to protein family HMM TIGR00100; hydrogenase expression/formation protein HypA 1708842 hypA 3103243 hypA Methylococcus capsulatus str. Bath hydrogenase expression/formation protein HypA YP_114051.1 1708489 D 243233 CDS YP_114052.1 53804354 3102408 1708878..1709729 1 NC_002977.6 identified by similarity to SP:P24190; match to protein family HMM PF02492; match to protein family HMM TIGR00073; hydrogenase nickel incorporation protein HypB 1709729 hypB 3102408 hypB Methylococcus capsulatus str. Bath hydrogenase nickel incorporation protein HypB YP_114052.1 1708878 D 243233 CDS YP_114053.1 53804352 3102531 1709742..1710842 1 NC_002977.6 identified by match to protein family HMM PF01924; hydrogenase expression/formation protein HypD 1710842 hypD 3102531 hypD Methylococcus capsulatus str. Bath hydrogenase expression/formation protein HypD YP_114053.1 1709742 D 243233 CDS YP_114054.1 53804353 3104635 1710851..1713115 1 NC_002977.6 identified by match to protein family HMM PF00708; match to protein family HMM PF00814; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143; [NiFe] hydrogenase maturation protein HypF 1713115 hypF 3104635 hypF Methylococcus capsulatus str. Bath [NiFe] hydrogenase maturation protein HypF YP_114054.1 1710851 D 243233 CDS YP_114055.1 53804343 3102611 complement(1714362..1715120) 1 NC_002977.6 hypothetical protein 1715120 3102611 MCA1606 Methylococcus capsulatus str. Bath hypothetical protein YP_114055.1 1714362 R 243233 CDS YP_114056.1 53804342 3102946 1715782..1717269 1 NC_002977.6 identified by similarity to OMNI:NTL01SS02515; hypothetical protein 1717269 3102946 MCA1608 Methylococcus capsulatus str. Bath hypothetical protein YP_114056.1 1715782 D 243233 CDS YP_114057.1 53804341 3102245 complement(1718510..1719103) 1 NC_002977.6 identified by similarity to OMNI:PG0277; ISMca6, transposase, OrfB 1719103 3102245 MCA1610 Methylococcus capsulatus str. Bath ISMca6, transposase, OrfB YP_114057.1 1718510 R 243233 CDS YP_114058.1 53804340 3102244 complement(1719075..1719614) 1 NC_002977.6 identified by similarity to OMNI:PG0277; ISMca6, transposase, OrfA 1719614 3102244 MCA1611 Methylococcus capsulatus str. Bath ISMca6, transposase, OrfA YP_114058.1 1719075 R 243233 CDS YP_114059.1 53804339 3102132 1719957..1720355 1 NC_002977.6 hypothetical protein 1720355 3102132 MCA1612 Methylococcus capsulatus str. Bath hypothetical protein YP_114059.1 1719957 D 243233 CDS YP_114060.1 53804338 3102452 1721075..1721992 1 NC_002977.6 identified by match to protein family HMM PF00313; match to protein family HMM PF01936; cold-shock DNA-binding domain-containing protein 1721992 3102452 MCA1614 Methylococcus capsulatus str. Bath cold-shock DNA-binding domain-containing protein YP_114060.1 1721075 D 243233 CDS YP_114061.1 53804330 3102902 complement(1722320..1722913) 1 NC_002977.6 identified by similarity to GP:2346994; match to protein family HMM PF00239; match to protein family HMM PF02796; match to protein family HMM TIGR01199; resolvase site-specific recombinase 1722913 3102902 MCA1615 Methylococcus capsulatus str. Bath resolvase site-specific recombinase YP_114061.1 1722320 R 243233 CDS YP_114062.1 53804329 3102713 1723399..1724436 1 NC_002977.6 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; C-5 cytosine-specific DNA methylase 1724436 3102713 MCA1616 Methylococcus capsulatus str. Bath C-5 cytosine-specific DNA methylase YP_114062.1 1723399 D 243233 CDS YP_114063.1 53804328 3102712 1724512..1725534 1 NC_002977.6 hypothetical protein 1725534 3102712 MCA1617 Methylococcus capsulatus str. Bath hypothetical protein YP_114063.1 1724512 D 243233 CDS YP_114064.2 161579538 3104736 1725503..1725928 1 NC_002977.6 identified by similarity to SP:P09184; DNA mismatch endonuclease, vsr 1725928 vsr 3104736 vsr Methylococcus capsulatus str. Bath DNA mismatch endonuclease, vsr YP_114064.2 1725503 D 243233 CDS YP_114065.1 53804326 3103051 complement(1725960..1726496) 1 NC_002977.6 identified by match to protein family HMM PF00089; trypsin domain-containing protein 1726496 3103051 MCA1619 Methylococcus capsulatus str. Bath trypsin domain-containing protein YP_114065.1 1725960 R 243233 CDS YP_114066.1 53804325 3103050 complement(1726574..1727662) 1 NC_002977.6 identified by match to protein family HMM PF00665; match to protein family HMM PF01527; ISMca4, transposase, OrfAB 1727662 3103050 MCA1620 Methylococcus capsulatus str. Bath ISMca4, transposase, OrfAB YP_114066.1 1726574 R 243233 CDS YP_114067.1 53804324 3104822 1728264..1728545 1 NC_002977.6 identified by similarity to SP:Q05459; match to protein family HMM PF04014; virulence-associated protein vagC 1728545 3104822 MCA1622 Methylococcus capsulatus str. Bath virulence-associated protein vagC YP_114067.1 1728264 D 243233 CDS YP_114068.1 53804323 3104228 1728542..1728946 1 NC_002977.6 identified by similarity to GP:20521538; match to protein family HMM PF01850; virulence associated protein VagD 1728946 3104228 MCA1623 Methylococcus capsulatus str. Bath virulence associated protein VagD YP_114068.1 1728542 D 243233 CDS YP_114069.1 53804314 3103977 complement(1729204..1729773) 1 NC_002977.6 identified by similarity to OMNI:NTL01SS02064; match to protein family HMM PF05685; hypothetical protein 1729773 3103977 MCA1625 Methylococcus capsulatus str. Bath hypothetical protein YP_114069.1 1729204 R 243233 CDS YP_114070.1 53804313 3103976 complement(1729841..1730110) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA05121; hypothetical protein 1730110 3103976 MCA1626 Methylococcus capsulatus str. Bath hypothetical protein YP_114070.1 1729841 R 243233 CDS YP_114071.1 53804312 3103179 complement(1730107..1730874) 1 NC_002977.6 identified by match to protein family HMM PF02146; Sir2 family transcriptional regulator 1730874 3103179 MCA1627 Methylococcus capsulatus str. Bath Sir2 family transcriptional regulator YP_114071.1 1730107 R 243233 CDS YP_114072.1 53804311 3102480 1730873..1731391 1 NC_002977.6 hypothetical protein 1731391 3102480 MCA1628 Methylococcus capsulatus str. Bath hypothetical protein YP_114072.1 1730873 D 243233 CDS YP_114073.1 53804310 3102479 1731972..1732154 1 NC_002977.6 hypothetical protein 1732154 3102479 MCA1629 Methylococcus capsulatus str. Bath hypothetical protein YP_114073.1 1731972 D 243233 CDS YP_114074.1 53804309 3102686 1732160..1733164 1 NC_002977.6 identified by similarity to SP:P03004; match to protein family HMM PF00308; DnaA domain-containing protein 1733164 3102686 MCA1630 Methylococcus capsulatus str. Bath DnaA domain-containing protein YP_114074.1 1732160 D 243233 CDS YP_114075.1 53804308 3103909 1733495..1734331 1 NC_002977.6 hypothetical protein 1734331 3103909 MCA1631 Methylococcus capsulatus str. Bath hypothetical protein YP_114075.1 1733495 D 243233 CDS YP_114076.1 53804307 3103908 1734319..1736667 1 NC_002977.6 identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein 1736667 3103908 MCA1632 Methylococcus capsulatus str. Bath mechanosensitive ion channel family protein YP_114076.1 1734319 D 243233 CDS YP_114077.1 53804306 3102590 complement(1736668..1737888) 1 NC_002977.6 identified by similarity to OMNI:DR1127; match to protein family HMM PF05816; hypothetical protein 1737888 3102590 MCA1633 Methylococcus capsulatus str. Bath hypothetical protein YP_114077.1 1736668 R 243233 CDS YP_114078.1 53804298 3104511 1738094..1741003 1 NC_002977.6 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1741003 nrdA 3104511 nrdA Methylococcus capsulatus str. Bath ribonucleotide-diphosphate reductase subunit alpha YP_114078.1 1738094 D 243233 CDS YP_114079.1 53804297 3104634 1741116..1741535 1 NC_002977.6 hypothetical protein 1741535 3104634 MCA1635 Methylococcus capsulatus str. Bath hypothetical protein YP_114079.1 1741116 D 243233 CDS YP_114080.1 53804296 3102642 1741571..1742125 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00423; match to protein family HMM PF01292; hypothetical protein 1742125 3102642 MCA1636 Methylococcus capsulatus str. Bath hypothetical protein YP_114080.1 1741571 D 243233 CDS YP_114081.1 53804295 3102641 1742181..1743392 1 NC_002977.6 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 1743392 nrdB 3102641 nrdB Methylococcus capsulatus str. Bath ribonucleotide-diphosphate reductase subunit beta YP_114081.1 1742181 D 243233 CDS YP_114082.1 53804294 3103598 1743508..1743918 1 NC_002977.6 identified by similarity to OMNI:NTL01XF01460; match to protein family HMM PF04892; hypothetical protein 1743918 3103598 MCA1638 Methylococcus capsulatus str. Bath hypothetical protein YP_114082.1 1743508 D 243233 CDS YP_114083.1 53804293 3103842 complement(1743845..1744921) 1 NC_002977.6 identified by match to protein family HMM PF00487; fatty acid desaturase 1744921 3103842 MCA1639 Methylococcus capsulatus str. Bath fatty acid desaturase YP_114083.1 1743845 R 243233 CDS YP_114084.1 53804292 3103841 1745002..1746780 1 NC_002977.6 identified by similarity to SP:P55474; match to protein family HMM PF02543; nodulation protein nolNO 1746780 3103841 MCA1640 Methylococcus capsulatus str. Bath nodulation protein nolNO YP_114084.1 1745002 D 243233 CDS YP_114085.1 53804291 3102939 1746786..1748741 1 NC_002977.6 identified by similarity to GP:17431966; hypothetical protein 1748741 3102939 MCA1641 Methylococcus capsulatus str. Bath hypothetical protein YP_114085.1 1746786 D 243233 CDS YP_114086.1 53804281 3103759 1748848..1749054 1 NC_002977.6 identified by similarity to SP:Q51647; IS3 family transposase 1749054 3103759 MCA1642 Methylococcus capsulatus str. Bath IS3 family transposase YP_114086.1 1748848 D 243233 CDS YP_114087.1 53804280 3103758 complement(1749200..1750177) 1 NC_002977.6 identified by match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase 1750177 3103758 MCA1643 Methylococcus capsulatus str. Bath peptidyl-prolyl cis-trans isomerase YP_114087.1 1749200 R 243233 CDS YP_114088.1 53804279 3104202 complement(1750177..1750464) 1 NC_002977.6 identified by similarity to SP:P15298; match to protein family HMM PF01722; bolA protein 1750464 bolA 3104202 bolA Methylococcus capsulatus str. Bath bolA protein YP_114088.1 1750177 R 243233 CDS YP_114089.1 53804278 3102267 complement(1750461..1750763) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA03202; match to protein family HMM PF03795; hypothetical protein 1750763 3102267 MCA1645 Methylococcus capsulatus str. Bath hypothetical protein YP_114089.1 1750461 R 243233 CDS YP_114090.1 53804277 3102266 complement(1750767..1751300) 1 NC_002977.6 identified by similarity to SP:P95745; match to protein family HMM PF04279; match to protein family HMM TIGR00997; intracellular septation protein A 1751300 ispZ 3102266 ispZ Methylococcus capsulatus str. Bath intracellular septation protein A YP_114090.1 1750767 R 243233 CDS YP_114091.1 53804276 3102192 1751499..1751810 1 NC_002977.6 identified by similarity to OMNI:NTL03PA03440; hypothetical protein 1751810 3102192 MCA1647 Methylococcus capsulatus str. Bath hypothetical protein YP_114091.1 1751499 D 243233 CDS YP_114092.1 53804275 3104450 complement(1751807..1752199) 1 NC_002977.6 identified by match to protein family HMM PF00903; match to protein family HMM TIGR00068; lactoylglutathione lyase 1752199 gloA 3104450 gloA Methylococcus capsulatus str. Bath lactoylglutathione lyase YP_114092.1 1751807 R 243233 CDS YP_114093.1 53804274 3104449 1753427..1755886 1 NC_002977.6 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein 1755886 3104449 MCA1650 Methylococcus capsulatus str. Bath sensory box protein YP_114093.1 1753427 D 243233 CDS YP_114094.1 53804266 3102681 complement(1755908..1756276) 1 NC_002977.6 hypothetical protein 1756276 3102681 MCA1651 Methylococcus capsulatus str. Bath hypothetical protein YP_114094.1 1755908 R 243233 CDS YP_114095.1 53804265 3102680 complement(1756335..1756838) 1 NC_002977.6 identified by similarity to SP:P18200; match to protein family HMM PF04608; phosphatidylglycerophosphatase A 1756838 pgpA 3102680 pgpA Methylococcus capsulatus str. Bath phosphatidylglycerophosphatase A YP_114095.1 1756335 R 243233 CDS YP_114096.1 53804264 3104761 complement(1756835..1757812) 1 NC_002977.6 identified by similarity to SP:P77785; match to protein family HMM PF02769; match to protein family HMM TIGR01379; thiamine-monophosphate kinase 1757812 thiL 3104761 thiL Methylococcus capsulatus str. Bath thiamine-monophosphate kinase YP_114096.1 1756835 R 243233 CDS YP_114097.1 53804263 3102427 complement(1757827..1758423) 1 NC_002977.6 identified by similarity to SP:P04381; match to protein family HMM PF01029; match to protein family HMM TIGR01951; N utilization substance protein B 1758423 nusB 3102427 nusB Methylococcus capsulatus str. Bath N utilization substance protein B YP_114097.1 1757827 R 243233 CDS YP_114098.1 53804262 3102426 complement(1758420..1758899) 1 NC_002977.6 identified by similarity to SP:P45149; match to protein family HMM PF00885; match to protein family HMM TIGR00114; 6,7-dimethyl-8-ribityllumazine synthase 1758899 ribE 3102426 ribE Methylococcus capsulatus str. Bath 6,7-dimethyl-8-ribityllumazine synthase YP_114098.1 1758420 R 243233 CDS YP_114099.1 53804261 3103337 complement(1758912..1760027) 1 NC_002977.6 identified by similarity to SP:P17620; match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00506; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1760027 ribBA 3103337 ribBA Methylococcus capsulatus str. Bath 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_114099.1 1758912 R 243233 CDS YP_114100.1 53804260 3102885 complement(1760024..1760683) 1 NC_002977.6 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1760683 ribE-1 3102885 ribE-1 Methylococcus capsulatus str. Bath riboflavin synthase subunit alpha YP_114100.1 1760024 R 243233 CDS YP_114101.1 53804252 3102634 complement(1760717..1761853) 1 NC_002977.6 identified by similarity to SP:P25539; match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD 1761853 ribD 3102634 ribD Methylococcus capsulatus str. Bath riboflavin biosynthesis protein RibD YP_114101.1 1760717 R 243233 CDS YP_114102.1 53804251 3102673 complement(1761869..1762366) 1 NC_002977.6 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR 1762366 nrdR 3102673 nrdR Methylococcus capsulatus str. Bath transcriptional regulator NrdR YP_114102.1 1761869 R 243233 CDS YP_114103.1 53804250 3102672 complement(1762420..1763676) 1 NC_002977.6 identified by similarity to SP:P06192; match to protein family HMM PF00464; serine hydroxymethyltransferase 1763676 glyA 3102672 glyA Methylococcus capsulatus str. Bath serine hydroxymethyltransferase YP_114103.1 1762420 R 243233 CDS YP_114104.1 53804249 3102184 complement(1763806..1765674) 1 NC_002977.6 identified by similarity to SP:P39216; match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 1765674 3102184 MCA1661 Methylococcus capsulatus str. Bath methyl-accepting chemotaxis protein YP_114104.1 1763806 R 243233 CDS YP_114105.1 53804248 3105091 complement(1765827..1767113) 1 NC_002977.6 ABC transporter substrate-binding protein 1767113 3105091 MCA1662 Methylococcus capsulatus str. Bath ABC transporter substrate-binding protein YP_114105.1 1765827 R 243233 CDS YP_114106.1 53804247 3105090 complement(1767149..1767475) 1 NC_002977.6 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; anti-anti-sigma factor family protein 1767475 3105090 MCA1663 Methylococcus capsulatus str. Bath anti-anti-sigma factor family protein YP_114106.1 1767149 R 243233 CDS YP_114107.1 53804246 3102383 complement(1767512..1769254) 1 NC_002977.6 identified by match to protein family HMM PF00860; xanthine/uracil permease 1769254 3102383 MCA1664 Methylococcus capsulatus str. Bath xanthine/uracil permease YP_114107.1 1767512 R 243233 CDS YP_114108.1 53804236 3102303 complement(1769251..1769967) 1 NC_002977.6 identified by match to protein family HMM PF00484; carbonic anhydrase 1769967 3102303 MCA1665 Methylococcus capsulatus str. Bath carbonic anhydrase YP_114108.1 1769251 R 243233 CDS YP_114109.1 53804235 3102302 1770110..1770538 1 NC_002977.6 identified by match to protein family HMM PF02518; sensor histidine kinase 1770538 3102302 MCA1666 Methylococcus capsulatus str. Bath sensor histidine kinase YP_114109.1 1770110 D 243233 CDS YP_114110.1 53804234 3104713 1771085..1771828 1 NC_002977.6 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1771828 pdxJ 3104713 pdxJ Methylococcus capsulatus str. Bath pyridoxine 5'-phosphate synthase YP_114110.1 1771085 D 243233 CDS YP_114111.1 53804233 3102116 1772145..1772852 1 NC_002977.6 hypothetical protein 1772852 3102116 MCA1668 Methylococcus capsulatus str. Bath hypothetical protein YP_114111.1 1772145 D 243233 CDS YP_114112.1 53804232 3102115 1772860..1773942 1 NC_002977.6 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00742; tRNA-dihydrouridine synthase A 1773942 3102115 MCA1669 Methylococcus capsulatus str. Bath tRNA-dihydrouridine synthase A YP_114112.1 1772860 D 243233 CDS YP_114113.1 53804231 3102440 1773965..1774522 1 NC_002977.6 identified by similarity to SP:Q54769; match to protein family HMM PF01227; match to protein family HMM TIGR00063; GTP cyclohydrolase I 1774522 folE 3102440 folE Methylococcus capsulatus str. Bath GTP cyclohydrolase I YP_114113.1 1773965 D 243233 CDS YP_114114.1 53804230 3102904 1774527..1775504 1 NC_002977.6 identified by similarity to SP:P23871; match to protein family HMM PF00762; match to protein family HMM TIGR00109; ferrochelatase 1775504 hemH 3102904 hemH Methylococcus capsulatus str. Bath ferrochelatase YP_114114.1 1774527 D 243233 CDS YP_114115.1 53804229 3102903 1775563..1777842 1 NC_002977.6 identified by similarity to SP:P02919; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02071; penicillin-binding protein 1777842 3102903 MCA1672 Methylococcus capsulatus str. Bath penicillin-binding protein YP_114115.1 1775563 D 243233 CDS YP_114116.1 53804221 3104024 complement(1777907..1781947) 1 NC_002977.6 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein 1781947 3104024 MCA1673 Methylococcus capsulatus str. Bath sensory box protein YP_114116.1 1777907 R 243233 CDS YP_114117.1 53804220 3104023 complement(1782007..1784097) 1 NC_002977.6 identified by similarity to SP:P39216; match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 1784097 3104023 MCA1674 Methylococcus capsulatus str. Bath methyl-accepting chemotaxis protein YP_114117.1 1782007 R 243233 CDS YP_114118.1 53804219 3105007 complement(1784303..1786018) 1 NC_002977.6 identified by match to protein family HMM PF00664; ABC transporter permease 1786018 3105007 MCA1675 Methylococcus capsulatus str. Bath ABC transporter permease YP_114118.1 1784303 R 243233 CDS YP_114119.1 53804053 3102202 complement(1786202..1787053) 1 NC_002977.6 identified by similarity to SP:P40595; match to protein family HMM PF02769; match to protein family HMM TIGR02124; hydrogenase expression/formation protein HypE 1787053 hypE 3102202 hypE Methylococcus capsulatus str. Bath hydrogenase expression/formation protein HypE YP_114119.1 1786202 R 243233 CDS YP_114120.1 53804052 3103018 complement(1787772..1789181) 1 NC_002977.6 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase 1789181 glnA 3103018 glnA Methylococcus capsulatus str. Bath glutamine synthetase YP_114120.1 1787772 R 243233 CDS YP_114121.1 53804051 3103017 complement(1789349..1790269) 1 NC_002977.6 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00586; hypothetical protein 1790269 3103017 MCA1678 Methylococcus capsulatus str. Bath hypothetical protein YP_114121.1 1789349 R 243233 CDS YP_114122.1 53804042 3103846 complement(1790307..1791533) 1 NC_002977.6 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 1791533 argJ 3103846 argJ Methylococcus capsulatus str. Bath bifunctional ornithine acetyltransferase/N-acetylglutamate synthase YP_114122.1 1790307 R 243233 CDS YP_114123.1 53804041 3103845 complement(1791517..1794045) 1 NC_002977.6 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 1794045 secA 3103845 secA Methylococcus capsulatus str. Bath preprotein translocase subunit SecA YP_114123.1 1791517 R 243233 CDS YP_114124.1 53804040 3103453 1794329..1796209 1 NC_002977.6 identified by similarity to SP:P07028; match to protein family HMM PF01541; match to protein family HMM PF02151; match to protein family HMM TIGR00194; excinuclease ABC subunit C 1796209 uvrC 3103453 uvrC Methylococcus capsulatus str. Bath excinuclease ABC subunit C YP_114124.1 1794329 D 243233 CDS YP_114125.1 53804039 3103452 1796213..1796782 1 NC_002977.6 identified by similarity to SP:P06978; match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1796782 pgsA 3103452 pgsA Methylococcus capsulatus str. Bath CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_114125.1 1796213 D 243233 CDS YP_114126.1 53804038 3103290 complement(1796796..1799357) 1 NC_002977.6 identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF07228; match to protein family HMM TIGR00229; sensory box protein 1799357 3103290 MCA1683 Methylococcus capsulatus str. Bath sensory box protein YP_114126.1 1796796 R 243233 CDS YP_114127.1 53804037 3103289 complement(1799354..1802722) 1 NC_002977.6 identified by similarity to GP:11830835; match to protein family HMM PF05088; hypothetical protein 1802722 3103289 MCA1684 Methylococcus capsulatus str. Bath hypothetical protein YP_114127.1 1799354 R 243233 CDS YP_114128.1 53804036 3103272 complement(1802742..1803170) 1 NC_002977.6 identified by similarity to SP:P17904; match to protein family HMM PF02518; anti-sigma B factor 1803170 3103272 MCA1685 Methylococcus capsulatus str. Bath anti-sigma B factor YP_114128.1 1802742 R 243233 CDS YP_114129.1 53804035 3103271 complement(1803184..1803519) 1 NC_002977.6 identified by similarity to SP:P10727; match to protein family HMM PF01740; match to protein family HMM TIGR00377; anti-sigma B factor antagonist 1803519 3103271 MCA1686 Methylococcus capsulatus str. Bath anti-sigma B factor antagonist YP_114129.1 1803184 R 243233 CDS YP_114130.1 53804025 3103595 complement(1803609..1805249) 1 NC_002977.6 identified by similarity to GP:17740495; match to protein family HMM PF01935; hypothetical protein 1805249 3103595 MCA1687 Methylococcus capsulatus str. Bath hypothetical protein YP_114130.1 1803609 R 243233 CDS YP_114131.1 53804024 3102072 1805248..1806759 1 NC_002977.6 hypothetical protein 1806759 3102072 MCA1688 Methylococcus capsulatus str. Bath hypothetical protein YP_114131.1 1805248 D 243233 CDS YP_114132.1 53804023 3102071 1806743..1807819 1 NC_002977.6 hypothetical protein 1807819 3102071 MCA1689 Methylococcus capsulatus str. Bath hypothetical protein YP_114132.1 1806743 D 243233 CDS YP_114133.1 53804022 3102915 1807827..1808666 1 NC_002977.6 D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase 1808666 mepA 3102915 mepA Methylococcus capsulatus str. Bath penicillin-insensitive murein endopeptidase YP_114133.1 1807827 D 243233 CDS YP_114134.1 53804021 3102914 complement(1808868..1809806) 1 NC_002977.6 identified by similarity to SP:P16384; match to protein family HMM PF01715; match to protein family HMM TIGR00174; tRNA delta(2)-isopentenylpyrophosphate transferase 1809806 miaA 3102914 miaA Methylococcus capsulatus str. Bath tRNA delta(2)-isopentenylpyrophosphate transferase YP_114134.1 1808868 R 243233 CDS YP_114135.1 53804020 3102684 complement(1809803..1811638) 1 NC_002977.6 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1811638 mutL 3102684 mutL Methylococcus capsulatus str. Bath DNA mismatch repair protein YP_114135.1 1809803 R 243233 CDS YP_114136.1 53804019 3102683 complement(1811730..1812335) 1 NC_002977.6 hypothetical protein 1812335 3102683 MCA1693 Methylococcus capsulatus str. Bath hypothetical protein YP_114136.1 1811730 R 243233 CDS YP_114137.1 53804018 3102198 complement(1812382..1813335) 1 NC_002977.6 identified by similarity to SP:P09625; match to protein family HMM PF00070; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase 1813335 trxB 3102198 trxB Methylococcus capsulatus str. Bath thioredoxin-disulfide reductase YP_114137.1 1812382 R 243233 CDS YP_114138.1 53804009 3102721 1813318..1815852 1 NC_002977.6 identified by similarity to SP:P46889; match to protein family HMM PF01580; DNA translocase FtsK 1815852 3102721 MCA1695 Methylococcus capsulatus str. Bath DNA translocase FtsK YP_114138.1 1813318 D 243233 CDS YP_114139.1 53804008 3104046 complement(1815869..1816363) 1 NC_002977.6 identified by similarity to OMNI:VC0849; match to protein family HMM PF03364; hypothetical protein 1816363 3104046 MCA1696 Methylococcus capsulatus str. Bath hypothetical protein YP_114139.1 1815869 R 243233 CDS YP_114140.1 53804007 3104045 complement(1816642..1817178) 1 NC_002977.6 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 1817178 3104045 MCA1697 Methylococcus capsulatus str. Bath flavodoxin FldA YP_114140.1 1816642 R 243233 CDS YP_114141.1 53804006 3103680 complement(1817204..1817353) 1 NC_002977.6 hypothetical protein 1817353 3103680 MCA1698 Methylococcus capsulatus str. Bath hypothetical protein YP_114141.1 1817204 R 243233 CDS YP_114142.1 53804005 3103679 complement(1817329..1817541) 1 NC_002977.6 hypothetical protein 1817541 3103679 MCA1699 Methylococcus capsulatus str. Bath hypothetical protein YP_114142.1 1817329 R 243233 CDS YP_114143.1 53804004 3102348 complement(1817579..1819030) 1 NC_002977.6 transporter 1819030 3102348 MCA1700 Methylococcus capsulatus str. Bath transporter YP_114143.1 1817579 R 243233 CDS YP_114144.1 53804003 3102347 complement(1819114..1820304) 1 NC_002977.6 hypothetical protein 1820304 3102347 MCA1701 Methylococcus capsulatus str. Bath hypothetical protein YP_114144.1 1819114 R 243233 CDS YP_114145.1 53803988 3103312 complement(1821661..1823289) 1 NC_002977.6 identified by similarity to SP:P06139; match to protein family HMM PF00118; chaperonin, 60 kDa subunit 1823289 groEL-3 3103312 groEL-3 Methylococcus capsulatus str. Bath chaperonin, 60 kDa subunit YP_114145.1 1821661 R 243233 CDS YP_114146.1 53803987 3103311 complement(1823333..1823623) 1 NC_002977.6 identified by similarity to SP:P26879; match to protein family HMM PF00166; chaperonin, 10 kDa subunit 1823623 groES-2 3103311 groES-2 Methylococcus capsulatus str. Bath chaperonin, 10 kDa subunit YP_114146.1 1823333 R 243233 CDS YP_114147.1 53803986 3104572 1824241..1824429 1 NC_002977.6 hypothetical protein 1824429 3104572 MCA1707 Methylococcus capsulatus str. Bath hypothetical protein YP_114147.1 1824241 D 243233 CDS YP_114148.1 53803985 3102839 complement(1825162..1825551) 1 NC_002977.6 identified by similarity to GP:2645861; IS3 family transposase 1825551 3102839 MCA1709 Methylococcus capsulatus str. Bath IS3 family transposase YP_114148.1 1825162 R 243233 CDS YP_114149.1 53803984 3102186 1825775..1826569 1 NC_002977.6 hypothetical protein 1826569 3102186 MCA1710 Methylococcus capsulatus str. Bath hypothetical protein YP_114149.1 1825775 D 243233 CDS YP_114150.1 53803983 3102185 1826597..1827907 1 NC_002977.6 identified by similarity to GP:15024215; match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; hypothetical protein 1827907 3102185 MCA1711 Methylococcus capsulatus str. Bath hypothetical protein YP_114150.1 1826597 D 243233 CDS YP_114151.1 53803975 3102076 complement(1827861..1828565) 1 NC_002977.6 role in sulfur assimilation; sulfate transport protein CysZ 1828565 3102076 MCA1712 Methylococcus capsulatus str. Bath sulfate transport protein CysZ YP_114151.1 1827861 R 243233 CDS YP_114152.1 53803974 3102781 complement(1828656..1830038) 1 NC_002977.6 identified by similarity to OMNI:NTL01ST2559; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199; sigma-54 dependent DNA-binding response regulator 1830038 3102781 MCA1713 Methylococcus capsulatus str. Bath sigma-54 dependent DNA-binding response regulator YP_114152.1 1828656 R 243233 CDS YP_114153.1 53803973 3102780 complement(1830058..1830627) 1 NC_002977.6 identified by similarity to GP:8996050; surface protein-like protein 1830627 3102780 MCA1714 Methylococcus capsulatus str. Bath surface protein-like protein YP_114153.1 1830058 R 243233 CDS YP_114154.1 53803972 3104818 complement(1830620..1832173) 1 NC_002977.6 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 1832173 3104818 MCA1715 Methylococcus capsulatus str. Bath sensor histidine kinase YP_114154.1 1830620 R 243233 CDS YP_114155.1 53803971 3104817 complement(1832201..1833070) 1 NC_002977.6 Catalyzes the formation of PRPP from ATP and ribose 5-phosphate; phosphoribosylpyrophosphate synthetase 1833070 3104817 MCA1716 Methylococcus capsulatus str. Bath phosphoribosylpyrophosphate synthetase YP_114155.1 1832201 R 243233 CDS YP_114156.1 53803970 3102436 complement(1833082..1834632) 1 NC_002977.6 catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine; thymidine phosphorylase 1834632 3102436 MCA1717 Methylococcus capsulatus str. Bath thymidine phosphorylase YP_114156.1 1833082 R 243233 CDS YP_114157.1 53803962 3102088 1835070..1835702 1 NC_002977.6 identified by similarity to GP:17430498; hypothetical protein 1835702 3102088 MCA1718 Methylococcus capsulatus str. Bath hypothetical protein YP_114157.1 1835070 D 243233 CDS YP_114158.1 53803961 3102087 complement(1835722..1836477) 1 NC_002977.6 hypothetical protein 1836477 3102087 MCA1719 Methylococcus capsulatus str. Bath hypothetical protein YP_114158.1 1835722 R 243233 CDS YP_114159.1 53803960 3102321 1836456..1837106 1 NC_002977.6 hypothetical protein 1837106 3102321 MCA1720 Methylococcus capsulatus str. Bath hypothetical protein YP_114159.1 1836456 D 243233 CDS YP_114160.1 53803959 3102320 1837165..1838460 1 NC_002977.6 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 1838460 3102320 MCA1721 Methylococcus capsulatus str. Bath RND family efflux transporter MFP subunit YP_114160.1 1837165 D 243233 CDS YP_114161.1 53803958 3105057 1838485..1841634 1 NC_002977.6 AcrB/AcrD/AcrF family protein 1841634 3105057 MCA1722 Methylococcus capsulatus str. Bath AcrB/AcrD/AcrF family protein YP_114161.1 1838485 D 243233 CDS YP_114162.1 53803957 3105056 1841631..1842941 1 NC_002977.6 identified by similarity to OMNI:CC1318; match to protein family HMM PF02321; outer membrane efflux protein 1842941 3105056 MCA1723 Methylococcus capsulatus str. Bath outer membrane efflux protein YP_114162.1 1841631 D 243233 CDS YP_114163.1 53803956 3104854 complement(1842959..1843543) 1 NC_002977.6 identified by match to protein family HMM PF01914; MarC family integral membrane protein 1843543 3104854 MCA1724 Methylococcus capsulatus str. Bath MarC family integral membrane protein YP_114163.1 1842959 R 243233 CDS YP_114164.1 53803955 3104853 complement(1843589..1844713) 1 NC_002977.6 identified by similarity to GP:2935166; match to protein family HMM PF00089; match to protein family HMM PF00595; serine protease 1844713 3104853 MCA1725 Methylococcus capsulatus str. Bath serine protease YP_114164.1 1843589 R 243233 CDS YP_114165.1 53803954 3104616 1844703..1845692 1 NC_002977.6 hypothetical protein 1845692 3104616 MCA1726 Methylococcus capsulatus str. Bath hypothetical protein YP_114165.1 1844703 D 243233 CDS YP_114166.1 53803945 3105052 complement(1845689..1846615) 1 NC_002977.6 identified by similarity to SP:P36659; match to protein family HMM PF00226; match to protein family HMM PF01556; curved DNA-binding protein 1846615 cbpA 3105052 cbpA Methylococcus capsulatus str. Bath curved DNA-binding protein YP_114166.1 1845689 R 243233 CDS YP_114167.1 53803944 3103280 complement(1846661..1847494) 1 NC_002977.6 identified by similarity to GP:19916878; match to protein family HMM PF02535; ZIP zinc transporter family protein 1847494 3103280 MCA1728 Methylococcus capsulatus str. Bath ZIP zinc transporter family protein YP_114167.1 1846661 R 243233 CDS YP_114168.1 53803943 3103279 complement(1847491..1847988) 1 NC_002977.6 identified by similarity to GP:19914581; match to protein family HMM PF06803; hypothetical protein 1847988 3103279 MCA1729 Methylococcus capsulatus str. Bath hypothetical protein YP_114168.1 1847491 R 243233 CDS YP_114169.1 53803942 3102574 1848051..1848500 1 NC_002977.6 identified by match to protein family HMM PF00011; HSP20 family protein 1848500 3102574 MCA1730 Methylococcus capsulatus str. Bath HSP20 family protein YP_114169.1 1848051 D 243233 CDS YP_114170.1 53803941 3102573 1848521..1848901 1 NC_002977.6 identified by match to protein family HMM PF00011; HSP20 family protein 1848901 3102573 MCA1731 Methylococcus capsulatus str. Bath HSP20 family protein YP_114170.1 1848521 D 243233 CDS YP_114171.1 53803940 3103055 1848980..1849483 1 NC_002977.6 identified by match to protein family HMM PF00011; HSP20 family protein 1849483 3103055 MCA1732 Methylococcus capsulatus str. Bath HSP20 family protein YP_114171.1 1848980 D 243233 CDS YP_114172.1 53803939 3103054 1849518..1850192 1 NC_002977.6 hypothetical protein 1850192 3103054 MCA1733 Methylococcus capsulatus str. Bath hypothetical protein YP_114172.1 1849518 D 243233 CDS YP_114173.1 53803938 3102895 complement(1850205..1851284) 1 NC_002977.6 identified by similarity to SP:P06655; match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492; alanine racemase 1851284 alr 3102895 alr Methylococcus capsulatus str. Bath alanine racemase YP_114173.1 1850205 R 243233 CDS YP_114174.1 53803929 3104137 complement(1851288..1852673) 1 NC_002977.6 identified by similarity to SP:P37469; match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665; replicative DNA helicase 1852673 dnaB 3104137 dnaB Methylococcus capsulatus str. Bath replicative DNA helicase YP_114174.1 1851288 R 243233 CDS YP_114175.1 53803928 3102434 complement(1852685..1854106) 1 NC_002977.6 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 1854106 rfaE 3102434 rfaE Methylococcus capsulatus str. Bath bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_114175.1 1852685 R 243233 CDS YP_114176.1 53803927 3102433 complement(1854183..1855133) 1 NC_002977.6 identified by similarity to SP:P52279; match to protein family HMM PF00561; match to protein family HMM TIGR01249; proline iminopeptidase 1855133 pip 3102433 pip Methylococcus capsulatus str. Bath proline iminopeptidase YP_114176.1 1854183 R 243233 CDS YP_114177.1 53803926 3102821 complement(1855211..1856134) 1 NC_002977.6 hypothetical protein 1856134 3102821 MCA1738 Methylococcus capsulatus str. Bath hypothetical protein YP_114177.1 1855211 R 243233 CDS YP_114178.1 53803925 3102820 1856611..1857573 1 NC_002977.6 identified by similarity to SP:P77770; citrate lyase subunit beta 1857573 3102820 MCA1739 Methylococcus capsulatus str. Bath citrate lyase subunit beta YP_114178.1 1856611 D 243233 CDS YP_114179.1 53803924 3104196 1857628..1858797 1 NC_002977.6 identified by similarity to SP:P80886; match to protein family HMM PF00549; match to protein family HMM PF02222; match to protein family HMM TIGR01016; succinyl-CoA synthetase subunit beta 1858797 sucC-2 3104196 sucC-2 Methylococcus capsulatus str. Bath succinyl-CoA synthetase subunit beta YP_114179.1 1857628 D 243233 CDS YP_114180.1 53803923 3104195 1858803..1859705 1 NC_002977.6 identified by similarity to SP:P80865; match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019; succinyl-CoA synthetase subunit alpha 1859705 sucD-2 3104195 sucD-2 Methylococcus capsulatus str. Bath succinyl-CoA synthetase subunit alpha YP_114180.1 1858803 D 243233 CDS YP_114181.1 53803922 3102533 1859776..1860096 1 NC_002977.6 identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein 1860096 3102533 MCA1742 Methylococcus capsulatus str. Bath rhodanese-like domain-containing protein YP_114181.1 1859776 D 243233 CDS YP_114182.1 53803921 3102532 1860098..1860559 1 NC_002977.6 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 1860559 dtD 3102532 dtD Methylococcus capsulatus str. Bath D-tyrosyl-tRNA(Tyr) deacylase YP_114182.1 1860098 D 243233 CDS YP_114183.1 53803920 3104456 1860615..1861463 1 NC_002977.6 identified by similarity to GP:1652538; match to protein family HMM PF00583; acetyltransferase 1861463 3104456 MCA1744 Methylococcus capsulatus str. Bath acetyltransferase YP_114183.1 1860615 D 243233 CDS YP_114184.1 53803919 3104455 1861552..1862535 1 NC_002977.6 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737; hypothetical protein 1862535 3104455 MCA1745 Methylococcus capsulatus str. Bath hypothetical protein YP_114184.1 1861552 D 243233 CDS YP_114185.1 53803918 3103600 1862532..1862822 1 NC_002977.6 identified by similarity to SP:P11028; match to protein family HMM PF02954; match to protein family HMM TIGR01199; DNA-binding protein Fis 1862822 fis 3103600 fis Methylococcus capsulatus str. Bath DNA-binding protein Fis YP_114185.1 1862532 D 243233 CDS YP_114186.1 53803917 3103599 1862857..1864419 1 NC_002977.6 identified by match to protein family HMM PF01808; match to protein family HMM PF02142; match to protein family HMM TIGR00355; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1864419 purH 3103599 purH Methylococcus capsulatus str. Bath phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_114186.1 1862857 D 243233 CDS YP_114187.1 53803916 3102444 1864425..1865624 1 NC_002977.6 identified by match to protein family HMM PF00037; match to protein family HMM PF02754; iron-sulfur cluster binding protein 1865624 3102444 MCA1748 Methylococcus capsulatus str. Bath iron-sulfur cluster binding protein YP_114187.1 1864425 D 243233 CDS YP_114188.1 53803907 3102622 complement(1865689..1866528) 1 NC_002977.6 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase 1866528 speD 3102622 speD Methylococcus capsulatus str. Bath S-adenosylmethionine decarboxylase YP_114188.1 1865689 R 243233 CDS YP_114189.1 53803906 3104038 complement(1866582..1866998) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00654; match to protein family HMM PF02566; OsmC/Ohr family protein 1866998 3104038 MCA1750 Methylococcus capsulatus str. Bath OsmC/Ohr family protein YP_114189.1 1866582 R 243233 CDS YP_114190.1 53803905 3104037 1867250..1867948 1 NC_002977.6 hypothetical protein 1867948 3104037 MCA1751 Methylococcus capsulatus str. Bath hypothetical protein YP_114190.1 1867250 D 243233 CDS YP_114191.1 53803904 3102519 1868033..1873798 1 NC_002977.6 identified by similarity to SP:Q8YM40; match to protein family HMM PF01835; hypothetical protein 1873798 3102519 MCA1752 Methylococcus capsulatus str. Bath hypothetical protein YP_114191.1 1868033 D 243233 CDS YP_114192.1 53804218 3102144 complement(1874323..1874748) 1 NC_002977.6 lipoprotein 1874748 3102144 MCA1753 Methylococcus capsulatus str. Bath lipoprotein YP_114192.1 1874323 R 243233 CDS YP_114193.1 53804217 3102143 complement(1874827..1876044) 1 NC_002977.6 identified by match to protein family HMM PF01360; match to protein family HMM TIGR01988; FAD-binding monooxygenase 1876044 3102143 MCA1754 Methylococcus capsulatus str. Bath FAD-binding monooxygenase YP_114193.1 1874827 R 243233 CDS YP_114194.1 53804216 3104412 complement(1876078..1876620) 1 NC_002977.6 hypothetical protein 1876620 3104412 MCA1755 Methylococcus capsulatus str. Bath hypothetical protein YP_114194.1 1876078 R 243233 CDS YP_114195.1 53804215 3103308 1876907..1878382 1 NC_002977.6 identified by similarity to SP:P25526; match to protein family HMM PF00171; match to protein family HMM TIGR01780; succinate-semialdehyde dehydrogenase 1878382 gabD 3103308 gabD Methylococcus capsulatus str. Bath succinate-semialdehyde dehydrogenase YP_114195.1 1876907 D 243233 CDS YP_114196.1 53804214 3103307 1878485..1882411 1 NC_002977.6 identified by similarity to GP:17427464; match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913; oxidoreductase 1882411 3103307 MCA1757 Methylococcus capsulatus str. Bath oxidoreductase YP_114196.1 1878485 D 243233 CDS YP_114197.1 53804206 3103455 1882820..1883851 1 NC_002977.6 identified by similarity to GP:16504642; hypothetical protein 1883851 3103455 MCA1758 Methylococcus capsulatus str. Bath hypothetical protein YP_114197.1 1882820 D 243233 CDS YP_114198.1 53804205 3103454 complement(1883730..1884626) 1 NC_002977.6 identified by match to protein family HMM PF00582; universal stress protein 1884626 3103454 MCA1759 Methylococcus capsulatus str. Bath universal stress protein YP_114198.1 1883730 R 243233 CDS YP_114199.1 53804204 3103647 complement(1884699..1886663) 1 NC_002977.6 identified by similarity to GP:17427424; match to protein family HMM PF02080; match to protein family HMM PF02254; sodium/hydrogen exchanger family protein 1886663 3103647 MCA1760 Methylococcus capsulatus str. Bath sodium/hydrogen exchanger family protein YP_114199.1 1884699 R 243233 CDS YP_114200.1 53804203 3102448 complement(1886755..1889514) 1 NC_002977.6 identified by similarity to SP:P37367; match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation-transporting ATPase 1889514 3102448 MCA1761 Methylococcus capsulatus str. Bath cation-transporting ATPase YP_114200.1 1886755 R 243233 CDS YP_114201.1 53804202 3102447 complement(1889582..1891027) 1 NC_002977.6 transporter 1891027 3102447 MCA1762 Methylococcus capsulatus str. Bath transporter YP_114201.1 1889582 R 243233 CDS YP_114202.1 53804201 3103126 complement(1891277..1892545) 1 NC_002977.6 identified by similarity to OMNI:VC1941; hypothetical protein 1892545 3103126 MCA1763 Methylococcus capsulatus str. Bath hypothetical protein YP_114202.1 1891277 R 243233 CDS YP_114203.1 53804200 3103125 1892803..1893477 1 NC_002977.6 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1893477 3103125 MCA1764 Methylococcus capsulatus str. Bath DNA-binding response regulator YP_114203.1 1892803 D 243233 CDS YP_114204.1 53804199 3104563 1893470..1894870 1 NC_002977.6 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 1894870 3104563 MCA1765 Methylococcus capsulatus str. Bath sensor histidine kinase YP_114204.1 1893470 D 243233 CDS YP_114205.1 53804190 3102635 1894931..1896061 1 NC_002977.6 identified by similarity to SP:P13510; match to protein family HMM TIGR01730; heavy metal efflux system protein 1896061 3102635 MCA1766 Methylococcus capsulatus str. Bath heavy metal efflux system protein YP_114205.1 1894931 D 243233 CDS YP_114206.1 53804189 3102930 1896072..1899173 1 NC_002977.6 identified by match to protein family HMM TIGR00914; CzcA family heavy metal efflux protein 1899173 3102930 MCA1767 Methylococcus capsulatus str. Bath CzcA family heavy metal efflux protein YP_114206.1 1896072 D 243233 CDS YP_114207.1 53804188 3102929 1899170..1900474 1 NC_002977.6 identified by similarity to OMNI:CC2721; match to protein family HMM PF02321; outer membrane heavy metal efflux protein 1900474 3102929 MCA1768 Methylococcus capsulatus str. Bath outer membrane heavy metal efflux protein YP_114207.1 1899170 D 243233 CDS YP_114208.1 53804187 3104231 complement(1900555..1901823) 1 NC_002977.6 identified by similarity to GP:19916924; match to protein family HMM PF03150; cytochrome c peroxidase 1901823 3104231 MCA1769 Methylococcus capsulatus str. Bath cytochrome c peroxidase YP_114208.1 1900555 R 243233 CDS YP_114209.1 53804186 3104230 complement(1902159..1902497) 1 NC_002977.6 hypothetical protein 1902497 3104230 MCA1771 Methylococcus capsulatus str. Bath hypothetical protein YP_114209.1 1902159 R 243233 CDS YP_114210.1 53804185 3105011 1902625..1904115 1 NC_002977.6 identified by similarity to GP:19918600; match to protein family HMM PF01943; polysaccharide biosynthesis protein 1904115 3105011 MCA1772 Methylococcus capsulatus str. Bath polysaccharide biosynthesis protein YP_114210.1 1902625 D 243233 CDS YP_114211.1 53804184 3105010 1904278..1904373 1 NC_002977.6 hypothetical protein 1904373 3105010 MCA1773 Methylococcus capsulatus str. Bath hypothetical protein YP_114211.1 1904278 D 243233 CDS YP_114212.1 53804183 3104670 1904432..1904860 1 NC_002977.6 identified by match to protein family HMM PF00582; universal stress protein 1904860 3104670 MCA1774 Methylococcus capsulatus str. Bath universal stress protein YP_114212.1 1904432 D 243233 CDS YP_114213.1 53804175 3102612 1904911..1905729 1 NC_002977.6 cytochrome c family protein 1905729 3102612 MCA1775 Methylococcus capsulatus str. Bath cytochrome c family protein YP_114213.1 1904911 D 243233 CDS YP_114214.1 53804174 3102265 complement(1906356..1908155) 1 NC_002977.6 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1908155 aspS 3102265 aspS Methylococcus capsulatus str. Bath aspartyl-tRNA synthetase YP_114214.1 1906356 R 243233 CDS YP_114215.1 53804173 3102264 complement(1908228..1908506) 1 NC_002977.6 identified by similarity to GP:7799507; hypothetical protein 1908506 3102264 MCA1777 Methylococcus capsulatus str. Bath hypothetical protein YP_114215.1 1908228 R 243233 CDS YP_114216.1 53804172 3103215 1908712..1909683 1 NC_002977.6 identified by match to protein family HMM PF02628; cytochrome oxidase assembly protein 1909683 3103215 MCA1778 Methylococcus capsulatus str. Bath cytochrome oxidase assembly protein YP_114216.1 1908712 D 243233 CDS YP_114217.1 53804171 3103214 complement(1909668..1910381) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04279; hypothetical protein 1910381 3103214 MCA1779 Methylococcus capsulatus str. Bath hypothetical protein YP_114217.1 1909668 R 243233 CDS YP_114218.1 53804170 3102249 complement(1910378..1911118) 1 NC_002977.6 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 1911118 3102249 MCA1780 Methylococcus capsulatus str. Bath pantothenate kinase YP_114218.1 1910378 R 243233 CDS YP_114219.1 53804169 3102248 complement(1911115..1912110) 1 NC_002977.6 identified by similarity to SP:P06709; match to protein family HMM PF03099; match to protein family HMM TIGR00121; biotin-(acetyl-CoA carboxylase) ligase 1912110 birA 3102248 birA Methylococcus capsulatus str. Bath biotin-(acetyl-CoA carboxylase) ligase YP_114219.1 1911115 R 243233 CDS YP_114220.1 53804168 3102211 complement(1912107..1913414) 1 NC_002977.6 identified by similarity to GP:9948679; match to protein family HMM PF00004; recombination factor protein RarA 1913414 3102211 MCA1782 Methylococcus capsulatus str. Bath recombination factor protein RarA YP_114220.1 1912107 R 243233 CDS YP_114221.1 53804159 3102851 complement(1913421..1914047) 1 NC_002977.6 identified by match to protein family HMM PF03548; match to protein family HMM TIGR00547; outer membrane lipoprotein carrier protein LolA 1914047 lolA 3102851 lolA Methylococcus capsulatus str. Bath outer membrane lipoprotein carrier protein LolA YP_114221.1 1913421 R 243233 CDS YP_114222.1 53804158 3102876 complement(1914052..1915413) 1 NC_002977.6 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1915413 purB 3102876 purB Methylococcus capsulatus str. Bath adenylosuccinate lyase YP_114222.1 1914052 R 243233 CDS YP_114223.1 53804157 3102875 complement(1915436..1916551) 1 NC_002977.6 identified by similarity to SP:P25745; match to protein family HMM PF03054; match to protein family HMM TIGR00420; tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase 1916551 trmU 3102875 trmU Methylococcus capsulatus str. Bath tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase YP_114223.1 1915436 R 243233 CDS YP_114224.1 53804156 3103712 complement(1916559..1917035) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA02625; match to protein family HMM PF00293; MutT/nudix family protein 1917035 3103712 MCA1786 Methylococcus capsulatus str. Bath MutT/nudix family protein YP_114224.1 1916559 R 243233 CDS YP_114225.1 53804155 3103711 1917145..1917894 1 NC_002977.6 hypothetical protein 1917894 3103711 MCA1787 Methylococcus capsulatus str. Bath hypothetical protein YP_114225.1 1917145 D 243233 CDS YP_114226.1 53804154 3103830 1917969..1918289 1 NC_002977.6 identified by similarity to OMNI:CC2467; match to protein family HMM PF02617; ATP-dependent Clp protease adaptor protein ClpS 1918289 3103830 MCA1788 Methylococcus capsulatus str. Bath ATP-dependent Clp protease adaptor protein ClpS YP_114226.1 1917969 D 243233 CDS YP_114227.1 53804153 3103829 1918320..1920590 1 NC_002977.6 identified by similarity to SP:P15716; match to protein family HMM PF00004; match to protein family HMM PF02861; ATP-dependent Clp protease ATP-binding subunit ClpA 1920590 clpA 3103829 clpA Methylococcus capsulatus str. Bath ATP-dependent Clp protease ATP-binding subunit ClpA YP_114227.1 1918320 D 243233 CDS YP_114228.1 53804145 3104980 complement(1920603..1920821) 1 NC_002977.6 identified by similarity to SP:P02998; match to protein family HMM PF00575; match to protein family HMM TIGR00008; translation initiation factor IF-1 1920821 infA 3104980 infA Methylococcus capsulatus str. Bath translation initiation factor IF-1 YP_114228.1 1920603 R 243233 CDS YP_114229.1 53804144 3102602 complement(1920850..1921551) 1 NC_002977.6 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 1921551 3102602 MCA1791 Methylococcus capsulatus str. Bath arginyl-tRNA-protein transferase YP_114229.1 1920850 R 243233 CDS YP_114230.1 53804143 3102601 complement(1921575..1922282) 1 NC_002977.6 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 1922282 aat 3102601 aat Methylococcus capsulatus str. Bath leucyl/phenylalanyl-tRNA--protein transferase YP_114230.1 1921575 R 243233 CDS YP_114231.1 53804142 3103421 complement(1922276..1923424) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA03230; match to protein family HMM PF04339; hypothetical protein 1923424 3103421 MCA1793 Methylococcus capsulatus str. Bath hypothetical protein YP_114231.1 1922276 R 243233 CDS YP_114232.1 53804141 3103420 1923514..1925181 1 NC_002977.6 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein 1925181 3103420 MCA1794 Methylococcus capsulatus str. Bath ABC transporter ATP-binding protein YP_114232.1 1923514 D 243233 CDS YP_114233.1 53804140 3103577 1925216..1926070 1 NC_002977.6 identified by similarity to GP:17429855; match to protein family HMM PF05673; hypothetical protein 1926070 3103577 MCA1795 Methylococcus capsulatus str. Bath hypothetical protein YP_114233.1 1925216 D 243233 CDS YP_114234.1 53804139 3103576 complement(1926197..1927441) 1 NC_002977.6 identified by similarity to GP:1913913; methane monooxygenase subunit B 1927441 pmoB 3103576 pmoB Methylococcus capsulatus str. Bath methane monooxygenase subunit B YP_114234.1 1926197 R 243233 CDS YP_114235.1 53804130 3104301 complement(1927548..1928291) 1 NC_002977.6 identified by similarity to GP:1913912; match to protein family HMM PF02461; methane monooxygenase subunit A 1928291 pmoA 3104301 pmoA Methylococcus capsulatus str. Bath methane monooxygenase subunit A YP_114235.1 1927548 R 243233 CDS YP_114236.1 53804129 3104300 complement(1928445..1929227) 1 NC_002977.6 identified by similarity to GP:1894818; match to protein family HMM PF04896; methane monooxygenase subunit C 1929227 pmoC1 3104300 pmoC1 Methylococcus capsulatus str. Bath methane monooxygenase subunit C YP_114236.1 1928445 R 243233 CDS YP_114237.1 53804128 3104266 1929583..1929882 1 NC_002977.6 identified by similarity to SP:Q06529; cytochrome c family protein 1929882 3104266 MCA1799 Methylococcus capsulatus str. Bath cytochrome c family protein YP_114237.1 1929583 D 243233 CDS YP_114238.1 53804127 3104265 1929924..1931150 1 NC_002977.6 identified by similarity to GP:19879585; oxidoreductase 1931150 3104265 MCA1800 Methylococcus capsulatus str. Bath oxidoreductase YP_114238.1 1929924 D 243233 CDS YP_114239.1 53804126 3102788 complement(1931144..1932274) 1 NC_002977.6 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 1932274 3102788 MCA1801 Methylococcus capsulatus str. Bath cation efflux family protein YP_114239.1 1931144 R 243233 CDS YP_114240.1 53804125 3102787 complement(1932300..1932950) 1 NC_002977.6 hypothetical protein 1932950 3102787 MCA1802 Methylococcus capsulatus str. Bath hypothetical protein YP_114240.1 1932300 R 243233 CDS YP_114241.1 53804124 3102630 1933022..1933741 1 NC_002977.6 identified by match to protein family HMM PF01738; dienelactone hydrolase 1933741 3102630 MCA1803 Methylococcus capsulatus str. Bath dienelactone hydrolase YP_114241.1 1933022 D 243233 CDS YP_114242.1 53804123 3102629 1933779..1934744 1 NC_002977.6 identified by similarity to SP:P30867; match to protein family HMM PF03255; match to protein family HMM TIGR00513; acetyl-CoA carboxylase, carboxyl transferase subunit alpha 1934744 accA 3102629 accA Methylococcus capsulatus str. Bath acetyl-CoA carboxylase, carboxyl transferase subunit alpha YP_114242.1 1933779 D 243233 CDS YP_114243.1 53804114 3104989 1934775..1936094 1 NC_002977.6 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433; tRNA(Ile)-lysidine synthetase 1936094 tilS 3104989 tilS Methylococcus capsulatus str. Bath tRNA(Ile)-lysidine synthetase YP_114243.1 1934775 D 243233 CDS YP_114244.1 53804113 3104988 complement(1936099..1938495) 1 NC_002977.6 identified by similarity to GP:5257178; fatty acid cis/trans isomerase 1938495 3104988 MCA1806 Methylococcus capsulatus str. Bath fatty acid cis/trans isomerase YP_114244.1 1936099 R 243233 CDS YP_114245.1 53804112 3103364 1939342..1939998 1 NC_002977.6 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1939998 3103364 MCA1807 Methylococcus capsulatus str. Bath TetR family transcriptional regulator YP_114245.1 1939342 D 243233 CDS YP_114246.1 53804111 3103363 1940055..1941155 1 NC_002977.6 identified by match to protein family HMM PF02687; ABC transporter permease 1941155 3103363 MCA1808 Methylococcus capsulatus str. Bath ABC transporter permease YP_114246.1 1940055 D 243233 CDS YP_114247.1 53804110 3104327 1941163..1941870 1 NC_002977.6 identified by similarity to SP:P75831; match to protein family HMM PF00005; ABC transporter ATP-binding protein 1941870 3104327 MCA1809 Methylococcus capsulatus str. Bath ABC transporter ATP-binding protein YP_114247.1 1941163 D 243233 CDS YP_114248.1 53804109 3104326 1941893..1942873 1 NC_002977.6 identified by similarity to SP:P75830; hypothetical protein 1942873 3104326 MCA1810 Methylococcus capsulatus str. Bath hypothetical protein YP_114248.1 1941893 D 243233 CDS YP_114249.1 53804108 3103876 1942936..1944864 1 NC_002977.6 hypothetical protein 1944864 3103876 MCA1811 Methylococcus capsulatus str. Bath hypothetical protein YP_114249.1 1942936 D 243233 CDS YP_114250.1 53804107 3103875 1945078..1946508 1 NC_002977.6 identified by similarity to SP:P76403; match to protein family HMM PF01136; U32 family peptidase 1946508 3103875 MCA1812 Methylococcus capsulatus str. Bath U32 family peptidase YP_114250.1 1945078 D 243233 CDS YP_114251.1 53804098 3102897 1946532..1947017 1 NC_002977.6 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 1947017 3102897 MCA1813 Methylococcus capsulatus str. Bath ribonuclease activity regulator protein RraA YP_114251.1 1946532 D 243233 CDS YP_114252.1 53804097 3102896 1947017..1947601 1 NC_002977.6 identified by similarity to GP:17429685; match to protein family HMM PF01923; match to protein family HMM TIGR00636; ATP:cob(I)alamin adenosyltransferase 1947601 3102896 MCA1814 Methylococcus capsulatus str. Bath ATP:cob(I)alamin adenosyltransferase YP_114252.1 1947017 D 243233 CDS YP_114253.1 53804096 3104077 1947649..1948590 1 NC_002977.6 identified by similarity to SP:P22565; match to protein family HMM PF02401; match to protein family HMM TIGR00216; hydroxymethylbutenyl pyrophosphate reductase 1948590 ispH 3104077 ispH Methylococcus capsulatus str. Bath hydroxymethylbutenyl pyrophosphate reductase YP_114253.1 1947649 D 243233 CDS YP_114254.1 53804095 3104076 1948629..1948991 1 NC_002977.6 identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein 1948991 3104076 MCA1816 Methylococcus capsulatus str. Bath rhodanese-like domain-containing protein YP_114254.1 1948629 D 243233 CDS YP_114255.1 53804094 3104618 1948997..1949422 1 NC_002977.6 identified by similarity to SP:P45802; match to protein family HMM PF01479; heat shock protein 15 1949422 hslR 3104618 hslR Methylococcus capsulatus str. Bath heat shock protein 15 YP_114255.1 1948997 D 243233 CDS YP_114256.1 53804093 3104617 1949431..1950834 1 NC_002977.6 identified by similarity to SP:P04994; match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237; exodeoxyribonuclease VII large subunit 1950834 xseA 3104617 xseA Methylococcus capsulatus str. Bath exodeoxyribonuclease VII large subunit YP_114256.1 1949431 D 243233 CDS YP_114257.1 53804092 3102600 1950877..1951416 1 NC_002977.6 identified by match to protein family HMM PF00691; OmpA domain-containing protein 1951416 3102600 MCA1819 Methylococcus capsulatus str. Bath OmpA domain-containing protein YP_114257.1 1950877 D 243233 CDS YP_114258.1 53804091 3102599 1951550..1951960 1 NC_002977.6 identified by similarity to OMNI:NTL01AT0235; match to protein family HMM TIGR02096; hypothetical protein 1951960 3102599 MCA1820 Methylococcus capsulatus str. Bath hypothetical protein YP_114258.1 1951550 D 243233 CDS YP_114259.1 53804082 3104415 1951966..1952577 1 NC_002977.6 identified by similarity to GP:15155134; hypothetical protein 1952577 3104415 MCA1821 Methylococcus capsulatus str. Bath hypothetical protein YP_114259.1 1951966 D 243233 CDS YP_114260.1 53804081 3104414 1952691..1953443 1 NC_002977.6 identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 1953443 3104414 MCA1822 Methylococcus capsulatus str. Bath carbon-nitrogen family hydrolase YP_114260.1 1952691 D 243233 CDS YP_114261.1 53804080 3104842 complement(1953400..1953894) 1 NC_002977.6 hypothetical protein 1953894 3104842 MCA1823 Methylococcus capsulatus str. Bath hypothetical protein YP_114261.1 1953400 R 243233 CDS YP_114262.1 53804079 3104841 1953999..1954898 1 NC_002977.6 identified by match to protein family HMM PF00892; hypothetical protein 1954898 3104841 MCA1824 Methylococcus capsulatus str. Bath hypothetical protein YP_114262.1 1953999 D 243233 CDS YP_114263.1 53804078 3102488 complement(1954903..1955556) 1 NC_002977.6 identified by similarity to GP:17131822; hypothetical protein 1955556 3102488 MCA1825 Methylococcus capsulatus str. Bath hypothetical protein YP_114263.1 1954903 R 243233 CDS YP_114264.1 53804077 3102487 complement(1955656..1956981) 1 NC_002977.6 identified by match to protein family HMM PF01464; hypothetical protein 1956981 3102487 MCA1826 Methylococcus capsulatus str. Bath hypothetical protein YP_114264.1 1955656 R 243233 CDS YP_114265.1 53804076 3103339 complement(1957140..1957664) 1 NC_002977.6 identified by similarity to GP:12698380; hypothetical protein 1957664 3103339 MCA1827 Methylococcus capsulatus str. Bath hypothetical protein YP_114265.1 1957140 R 243233 CDS YP_114266.1 53804075 3103338 complement(1957742..1958587) 1 NC_002977.6 identified by similarity to SP:P14299; dinitrogenase reductase ADP-ribosyltransferase-like protein 1958587 3103338 MCA1828 Methylococcus capsulatus str. Bath dinitrogenase reductase ADP-ribosyltransferase-like protein YP_114266.1 1957742 R 243233 CDS YP_114267.1 53804066 3103428 complement(1958646..1959980) 1 NC_002977.6 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1959980 clpX 3103428 clpX Methylococcus capsulatus str. Bath ATP-dependent protease ATP-binding subunit ClpX YP_114267.1 1958646 R 243233 CDS YP_114268.1 53803903 3102518 complement(1959977..1960726) 1 NC_002977.6 identified by similarity to SP:P74089; match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine acetyltransferase 1960726 cysE-1 3102518 cysE-1 Methylococcus capsulatus str. Bath serine acetyltransferase YP_114268.1 1959977 R 243233 CDS YP_114269.1 53803902 3104679 complement(1960720..1960887) 1 NC_002977.6 hypothetical protein 1960887 3104679 MCA1831 Methylococcus capsulatus str. Bath hypothetical protein YP_114269.1 1960720 R 243233 CDS YP_114270.1 53803901 3104678 1961125..1962240 1 NC_002977.6 identified by similarity to GP:18891930; hypothetical protein 1962240 3104678 MCA1833 Methylococcus capsulatus str. Bath hypothetical protein YP_114270.1 1961125 D 243233 CDS YP_114271.1 53803900 3103133 1962237..1963307 1 NC_002977.6 identified by similarity to SP:P11452; match to protein family HMM PF01188; match to protein family HMM PF02746; chloromuconate cycloisomerase 1963307 3103133 MCA1834 Methylococcus capsulatus str. Bath chloromuconate cycloisomerase YP_114271.1 1962237 D 243233 CDS YP_114272.1 53803899 3103132 1963318..1963758 1 NC_002977.6 hypothetical protein 1963758 3103132 MCA1835 Methylococcus capsulatus str. Bath hypothetical protein YP_114272.1 1963318 D 243233 CDS YP_114273.2 229220806 3104883 1963769..1965481 1 NC_002977.6 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1965481 sfcA 3104883 sfcA Methylococcus capsulatus str. Bath malate dehydrogenase YP_114273.2 1963769 D 243233 CDS YP_114274.1 53803889 3104882 1965508..1967169 1 NC_002977.6 catalyzes the formation of 2-acetolactate from pyruvate in stationary phase; acetolactate synthase 1967169 ilvK 3104882 ilvK Methylococcus capsulatus str. Bath acetolactate synthase YP_114274.1 1965508 D 243233 CDS YP_114275.1 53803888 3103061 1967189..1967971 1 NC_002977.6 identified by similarity to SP:P05361; match to protein family HMM PF03306; match to protein family HMM TIGR01252; alpha-acetolactate decarboxylase 1967971 budA 3103061 budA Methylococcus capsulatus str. Bath alpha-acetolactate decarboxylase YP_114275.1 1967189 D 243233 CDS YP_114276.1 53803887 3103060 complement(1968203..1968784) 1 NC_002977.6 identified by similarity to GP:17428896; lipoprotein 1968784 3103060 MCA1839 Methylococcus capsulatus str. Bath lipoprotein YP_114276.1 1968203 R 243233 CDS YP_114277.1 53803886 3102351 complement(1968909..1970135) 1 NC_002977.6 identified by similarity to OMNI:NTL01PM1826; match to protein family HMM PF02687; hypothetical protein 1970135 3102351 MCA1840 Methylococcus capsulatus str. Bath hypothetical protein YP_114277.1 1968909 R 243233 CDS YP_114278.1 53803885 3102350 complement(1970128..1970844) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00074; match to protein family HMM PF00005; ABC transporter ATP-binding protein 1970844 3102350 MCA1841 Methylococcus capsulatus str. Bath ABC transporter ATP-binding protein YP_114278.1 1970128 R 243233 CDS YP_114279.1 53803884 3102161 complement(1970841..1972802) 1 NC_002977.6 identified by similarity to OMNI:NTL01PM1824; hypothetical protein 1972802 3102161 MCA1842 Methylococcus capsulatus str. Bath hypothetical protein YP_114279.1 1970841 R 243233 CDS YP_114280.1 53803883 3102160 complement(1972799..1974145) 1 NC_002977.6 hypothetical protein 1974145 3102160 MCA1843 Methylococcus capsulatus str. Bath hypothetical protein YP_114280.1 1972799 R 243233 CDS YP_114281.1 53803874 3104644 complement(1974142..1976823) 1 NC_002977.6 identified by similarity to GP:15980287; hypothetical protein 1976823 3104644 MCA1844 Methylococcus capsulatus str. Bath hypothetical protein YP_114281.1 1974142 R 243233 CDS YP_114282.1 53803873 3104643 complement(1976828..1979818) 1 NC_002977.6 identified by similarity to GB:AAK03903.1; hypothetical protein 1979818 3104643 MCA1845 Methylococcus capsulatus str. Bath hypothetical protein YP_114282.1 1976828 R 243233 CDS YP_114283.1 53803872 3104073 complement(1979840..1981414) 1 NC_002977.6 identified by similarity to OMNI:NTL01PM1820; hypothetical protein 1981414 3104073 MCA1846 Methylococcus capsulatus str. Bath hypothetical protein YP_114283.1 1979840 R 243233 CDS YP_114284.1 53803871 3104072 complement(1981615..1982958) 1 NC_002977.6 identified by similarity to SP:P31120; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; match to protein family HMM TIGR01455; phosphoglucosamine mutase 1982958 glmM 3104072 glmM Methylococcus capsulatus str. Bath phosphoglucosamine mutase YP_114284.1 1981615 R 243233 CDS YP_114285.1 53803870 3104801 complement(1983073..1984989) 1 NC_002977.6 identified by similarity to SP:P28691; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; cell division protein FtsH 1984989 ftsH-2 3104801 ftsH-2 Methylococcus capsulatus str. Bath cell division protein FtsH YP_114285.1 1983073 R 243233 CDS YP_114286.1 53803869 3104800 complement(1985184..1985816) 1 NC_002977.6 identified by similarity to SP:P28692; match to protein family HMM PF01728; ribosomal RNA large subunit methyltransferase J 1985816 rrmJ 3104800 rrmJ Methylococcus capsulatus str. Bath ribosomal RNA large subunit methyltransferase J YP_114286.1 1985184 R 243233 CDS YP_114287.1 53803868 3103678 1985866..1986156 1 NC_002977.6 identified by similarity to OMNI:VC0635; match to protein family HMM PF01985; match to protein family HMM TIGR00253; hypothetical protein 1986156 3103678 MCA1850 Methylococcus capsulatus str. Bath hypothetical protein YP_114287.1 1985866 D 243233 CDS YP_114288.1 53803860 3102824 complement(1986153..1986629) 1 NC_002977.6 identified by similarity to SP:P21346; match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462; transcription elongation factor GreA 1986629 greA 3102824 greA Methylococcus capsulatus str. Bath transcription elongation factor GreA YP_114288.1 1986153 R 243233 CDS YP_114289.1 53803859 3102823 complement(1986654..1989872) 1 NC_002977.6 identified by match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369; carbamoyl-phosphate synthase large subunit 1989872 carB 3102823 carB Methylococcus capsulatus str. Bath carbamoyl-phosphate synthase large subunit YP_114289.1 1986654 R 243233 CDS YP_114290.1 53803858 3105027 complement(1989888..1991024) 1 NC_002977.6 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1991024 carA 3105027 carA Methylococcus capsulatus str. Bath carbamoyl phosphate synthase small subunit YP_114290.1 1989888 R 243233 CDS YP_114291.1 53803857 3105026 complement(1991159..1991968) 1 NC_002977.6 identified by similarity to SP:P04036; match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036; dihydrodipicolinate reductase 1991968 dapB 3105026 dapB Methylococcus capsulatus str. Bath dihydrodipicolinate reductase YP_114291.1 1991159 R 243233 CDS YP_114292.1 53803856 3102597 complement(1991986..1993119) 1 NC_002977.6 identified by similarity to SP:P08622; match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; dnaJ protein 1993119 dnaJ 3102597 dnaJ Methylococcus capsulatus str. Bath dnaJ protein YP_114292.1 1991986 R 243233 CDS YP_114293.1 53803855 3102596 complement(1993215..1995140) 1 NC_002977.6 identified by similarity to SP:P04475; match to protein family HMM PF00012; molecular chaperone DnaK 1995140 dnaK 3102596 dnaK Methylococcus capsulatus str. Bath molecular chaperone DnaK YP_114293.1 1993215 R 243233 CDS YP_114294.1 53803854 3102422 complement(1995209..1995766) 1 NC_002977.6 identified by similarity to SP:P09372; match to protein family HMM PF01025; heat shock protein GrpE 1995766 grpE 3102422 grpE Methylococcus capsulatus str. Bath heat shock protein GrpE YP_114294.1 1995209 R 243233 CDS YP_114295.1 53803853 3102421 complement(1995875..1996927) 1 NC_002977.6 identified by match to protein family HMM PF01628; match to protein family HMM TIGR00331; heat-inducible transcription repressor HrcA 1996927 hrcA 3102421 hrcA Methylococcus capsulatus str. Bath heat-inducible transcription repressor HrcA YP_114295.1 1995875 R 243233 CDS YP_114296.1 53803844 3103756 1997141..1998013 1 NC_002977.6 identified by similarity to SP:Q9HZC0; match to protein family HMM PF01513; hypothetical protein 1998013 3103756 MCA1859 Methylococcus capsulatus str. Bath hypothetical protein YP_114296.1 1997141 D 243233 CDS YP_114297.1 53803843 3103755 1998017..1999693 1 NC_002977.6 identified by similarity to SP:P05824; match to protein family HMM TIGR00634; DNA repair protein RecN 1999693 recN 3103755 recN Methylococcus capsulatus str. Bath DNA repair protein RecN YP_114297.1 1998017 D 243233 CDS YP_114298.1 53803842 3103173 1999906..2001009 1 NC_002977.6 identified by similarity to OMNI:NTL01XF02443; match to protein family HMM PF04371; hypothetical protein 2001009 3103173 MCA1861 Methylococcus capsulatus str. Bath hypothetical protein YP_114298.1 1999906 D 243233 CDS YP_114299.1 53803841 3103172 2001006..2001893 1 NC_002977.6 identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 2001893 3103172 MCA1862 Methylococcus capsulatus str. Bath carbon-nitrogen family hydrolase YP_114299.1 2001006 D 243233 CDS YP_114300.1 53803840 3102206 complement(2001965..2002303) 1 NC_002977.6 identified by similarity to SP:P42505; match to protein family HMM PF00816; regulatory protein 2002303 3102206 MCA1863 Methylococcus capsulatus str. Bath regulatory protein YP_114300.1 2001965 R 243233 CDS YP_114301.1 53803839 3102205 2002683..2006126 1 NC_002977.6 identified by similarity to SP:P30958; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor 2006126 mfd 3102205 mfd Methylococcus capsulatus str. Bath transcription-repair coupling factor YP_114301.1 2002683 D 243233 CDS YP_114302.1 53803838 3103238 2006185..2006841 1 NC_002977.6 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2006841 ribE-2 3103238 ribE-2 Methylococcus capsulatus str. Bath riboflavin synthase subunit alpha YP_114302.1 2006185 D 243233 CDS YP_114303.1 53803837 3103237 2006969..2007196 1 NC_002977.6 hypothetical protein 2007196 3103237 MCA1866 Methylococcus capsulatus str. Bath hypothetical protein YP_114303.1 2006969 D 243233 CDS YP_114304.1 53803828 3102798 complement(2007197..2007559) 1 NC_002977.6 identified by similarity to PIR:JC7085; (2Fe-2S) ferredoxin 2007559 3102798 MCA1867 Methylococcus capsulatus str. Bath (2Fe-2S) ferredoxin YP_114304.1 2007197 R 243233 CDS YP_114305.1 53803827 3102797 complement(2007600..2009759) 1 NC_002977.6 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389; ATP-dependent DNA helicase RecQ 2009759 recQ 3102797 recQ Methylococcus capsulatus str. Bath ATP-dependent DNA helicase RecQ YP_114305.1 2007600 R 243233 CDS YP_114306.1 53803826 3103169 2009846..2010205 1 NC_002977.6 identified by similarity to OMNI:NTL01SS00582; hypothetical protein 2010205 3103169 MCA1869 Methylococcus capsulatus str. Bath hypothetical protein YP_114306.1 2009846 D 243233 CDS YP_114307.1 53803825 3103168 2010202..2011047 1 NC_002977.6 riboflavin biosynthesis protein RibD domain-containing protein 2011047 3103168 MCA1870 Methylococcus capsulatus str. Bath riboflavin biosynthesis protein RibD domain-containing protein YP_114307.1 2010202 D 243233 CDS YP_114308.1 53803824 3102191 2011064..2012770 1 NC_002977.6 identified by similarity to SP:P27854; match to protein family HMM PF03109; ubiquinone biosynthesis protein AarF 2012770 3102191 MCA1871 Methylococcus capsulatus str. Bath ubiquinone biosynthesis protein AarF YP_114308.1 2011064 D 243233 CDS YP_114309.1 53803823 3102190 complement(2012729..2014021) 1 NC_002977.6 identified by similarity to SP:P37312; match to protein family HMM PF00375; C4-dicarboxylate transporter 2014021 3102190 MCA1872 Methylococcus capsulatus str. Bath C4-dicarboxylate transporter YP_114309.1 2012729 R 243233 CDS YP_114310.1 53803822 3102126 2014295..2015962 1 NC_002977.6 identified by similarity to GP:3549693; hypothetical protein 2015962 3102126 MCA1873 Methylococcus capsulatus str. Bath hypothetical protein YP_114310.1 2014295 D 243233 CDS YP_114311.1 53803821 3102125 complement(2015999..2016724) 1 NC_002977.6 identified by match to protein family HMM PF03734; hypothetical protein 2016724 3102125 MCA1874 Methylococcus capsulatus str. Bath hypothetical protein YP_114311.1 2015999 R 243233 CDS YP_114312.1 53803812 3104611 2016800..2017804 1 NC_002977.6 identified by match to protein family HMM PF01758; bile acid transporter family protein 2017804 3104611 MCA1875 Methylococcus capsulatus str. Bath bile acid transporter family protein YP_114312.1 2016800 D 243233 CDS YP_114313.1 53803811 3104610 complement(2017761..2018828) 1 NC_002977.6 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 2018828 3104610 MCA1876 Methylococcus capsulatus str. Bath homoserine O-succinyltransferase YP_114313.1 2017761 R 243233 CDS YP_114314.1 53803810 3102762 2018809..2019690 1 NC_002977.6 hypothetical protein 2019690 3102762 MCA1877 Methylococcus capsulatus str. Bath hypothetical protein YP_114314.1 2018809 D 243233 CDS YP_114315.1 53803809 3102761 complement(2019692..2020087) 1 NC_002977.6 identified by similarity to OMNI:NTL01SM02419; match to protein family HMM PF01152; hypothetical protein 2020087 3102761 MCA1878 Methylococcus capsulatus str. Bath hypothetical protein YP_114315.1 2019692 R 243233 CDS YP_114316.1 53803808 3102153 complement(2020101..2020733) 1 NC_002977.6 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 2020733 nadD 3102153 nadD Methylococcus capsulatus str. Bath nicotinic acid mononucleotide adenylyltransferase YP_114316.1 2020101 R 243233 CDS YP_114317.1 53803807 3102152 complement(2020747..2022039) 1 NC_002977.6 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 2022039 proA 3102152 proA Methylococcus capsulatus str. Bath gamma-glutamyl phosphate reductase YP_114317.1 2020747 R 243233 CDS YP_114318.1 53803806 3102517 complement(2022036..2022437) 1 NC_002977.6 hypothetical protein 2022437 3102517 MCA1881 Methylococcus capsulatus str. Bath hypothetical protein YP_114318.1 2022036 R 243233 CDS YP_114319.1 53803805 3102516 2022692..2026636 1 NC_002977.6 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733; non-ribosomal peptide synthetase 2026636 3102516 MCA1883 Methylococcus capsulatus str. Bath non-ribosomal peptide synthetase YP_114319.1 2022692 D 243233 CDS YP_114320.1 53803796 3103001 2026818..2027711 1 NC_002977.6 hypothetical protein 2027711 3103001 MCA1884 Methylococcus capsulatus str. Bath hypothetical protein YP_114320.1 2026818 D 243233 CDS YP_114321.1 53803795 3103000 2028465..2029043 1 NC_002977.6 identified by similarity to OMNI:NTL01SPL0989; hypothetical protein 2029043 3103000 MCA1886 Methylococcus capsulatus str. Bath hypothetical protein YP_114321.1 2028465 D 243233 CDS YP_114322.1 53803794 3103262 2029128..2029370 1 NC_002977.6 identified by similarity to GP:6899520; hypothetical protein 2029370 3103262 MCA1887 Methylococcus capsulatus str. Bath hypothetical protein YP_114322.1 2029128 D 243233 CDS YP_114323.1 53803793 3103261 2029427..2031007 1 NC_002977.6 identified by similarity to GP:17984614; match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM TIGR00497; type I restriction-modification system, M subunit 2031007 hsdM 3103261 hsdM Methylococcus capsulatus str. Bath type I restriction-modification system, M subunit YP_114323.1 2029427 D 243233 CDS YP_114324.1 53803792 3104013 2031004..2032113 1 NC_002977.6 identified by similarity to GP:6723238; hypothetical protein 2032113 3104013 MCA1889 Methylococcus capsulatus str. Bath hypothetical protein YP_114324.1 2031004 D 243233 CDS YP_114325.1 53803791 3104012 2032106..2033356 1 NC_002977.6 identified by match to protein family HMM PF01420; type I restriction-modification system subunit S 2033356 3104012 MCA1890 Methylococcus capsulatus str. Bath type I restriction-modification system subunit S YP_114325.1 2032106 D 243233 CDS YP_114326.1 53803790 3103201 2033353..2035986 1 NC_002977.6 identified by similarity to GP:6009450; match to protein family HMM PF02231; hypothetical protein 2035986 3103201 MCA1891 Methylococcus capsulatus str. Bath hypothetical protein YP_114326.1 2033353 D 243233 CDS YP_114327.1 53803789 3103200 2035968..2037116 1 NC_002977.6 identified by similarity to GP:19916049; match to protein family HMM PF04326; hypothetical protein 2037116 3103200 MCA1892 Methylococcus capsulatus str. Bath hypothetical protein YP_114327.1 2035968 D 243233 CDS YP_114328.1 53803780 3104219 2037119..2040328 1 NC_002977.6 identified by similarity to GP:19919302; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; type I restriction-modification system, R subunit 2040328 3104219 MCA1893 Methylococcus capsulatus str. Bath type I restriction-modification system, R subunit YP_114328.1 2037119 D 243233 CDS YP_114329.1 53803779 3104218 2040325..2041053 1 NC_002977.6 identified by similarity to GP:19919303; match to protein family HMM PF01863; hypothetical protein 2041053 3104218 MCA1894 Methylococcus capsulatus str. Bath hypothetical protein YP_114329.1 2040325 D 243233 CDS YP_114330.1 53803778 3104257 2041257..2041580 1 NC_002977.6 identified by match to protein family HMM PF01527; ISMca3, transposase, OrfA 2041580 3104257 MCA1895 Methylococcus capsulatus str. Bath ISMca3, transposase, OrfA YP_114330.1 2041257 D 243233 CDS YP_114331.1 53803777 3104256 2041637..2042485 1 NC_002977.6 identified by match to protein family HMM PF00665; ISMca3, transposase, OrfB 2042485 3104256 MCA1896 Methylococcus capsulatus str. Bath ISMca3, transposase, OrfB YP_114331.1 2041637 D 243233 CDS YP_114332.1 53803776 3104940 complement(2042856..2044361) 1 NC_002977.6 hypothetical protein 2044361 3104940 MCA1897 Methylococcus capsulatus str. Bath hypothetical protein YP_114332.1 2042856 R 243233 CDS YP_114333.1 53803775 3104939 complement(2044378..2045709) 1 NC_002977.6 identified by similarity to SP:P55135; match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA 2045709 rumA 3104939 rumA Methylococcus capsulatus str. Bath 23S rRNA (uracil-5-)-methyltransferase RumA YP_114333.1 2044378 R 243233 CDS YP_114334.1 53803774 3103585 complement(2045711..2046598) 1 NC_002977.6 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 2046598 cysM 3103585 cysM Methylococcus capsulatus str. Bath cysteine synthase B YP_114334.1 2045711 R 243233 CDS YP_114335.1 53803773 3103584 complement(2046713..2047657) 1 NC_002977.6 identified by similarity to GP:15025562; match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 2047657 3103584 MCA1900 Methylococcus capsulatus str. Bath cation efflux family protein YP_114335.1 2046713 R 243233 CDS YP_114336.1 53803772 3105050 2047767..2048588 1 NC_002977.6 hypothetical protein 2048588 3105050 MCA1901 Methylococcus capsulatus str. Bath hypothetical protein YP_114336.1 2047767 D 243233 CDS YP_114337.1 53803771 3105049 complement(2048593..2049129) 1 NC_002977.6 identified by similarity to SP:O67303; hypothetical protein 2049129 3105049 MCA1902 Methylococcus capsulatus str. Bath hypothetical protein YP_114337.1 2048593 R 243233 CDS YP_114338.1 53803770 3104364 complement(2049126..2049620) 1 NC_002977.6 identified by similarity to OMNI:NTL01AA00874; hypothetical protein 2049620 3104364 MCA1903 Methylococcus capsulatus str. Bath hypothetical protein YP_114338.1 2049126 R 243233 CDS YP_114339.1 53803769 3104363 complement(2049800..2050498) 1 NC_002977.6 lipoprotein 2050498 3104363 MCA1904 Methylococcus capsulatus str. Bath lipoprotein YP_114339.1 2049800 R 243233 CDS YP_114340.1 53803768 3103266 complement(2050524..2052041) 1 NC_002977.6 identified by similarity to SP:O67300; hypothetical protein 2052041 3103266 MCA1905 Methylococcus capsulatus str. Bath hypothetical protein YP_114340.1 2050524 R 243233 CDS YP_114341.1 53803767 3103265 2052282..2053454 1 NC_002977.6 identified by similarity to SP:Q51658; match to protein family HMM PF03150; cytochrome c peroxidase 2053454 3103265 MCA1906 Methylococcus capsulatus str. Bath cytochrome c peroxidase YP_114341.1 2052282 D 243233 CDS YP_114342.1 53804065 3103427 complement(2053460..2054545) 1 NC_002977.6 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00378; calcium/proton exchanger 2054545 cax-2 3103427 cax-2 Methylococcus capsulatus str. Bath calcium/proton exchanger YP_114342.1 2053460 R 243233 CDS YP_114343.1 53804064 3104183 complement(2054681..2054857) 1 NC_002977.6 hypothetical protein 2054857 3104183 MCA1908 Methylococcus capsulatus str. Bath hypothetical protein YP_114343.1 2054681 R 243233 CDS YP_114344.1 53804063 3104182 2055204..2055470 1 NC_002977.6 hypothetical protein 2055470 3104182 MCA1910 Methylococcus capsulatus str. Bath hypothetical protein YP_114344.1 2055204 D 243233 CDS YP_114345.1 53804062 3104044 2055660..2058179 1 NC_002977.6 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525; heavy metal translocating P-type ATPase 2058179 3104044 MCA1911 Methylococcus capsulatus str. Bath heavy metal translocating P-type ATPase YP_114345.1 2055660 D 243233 CDS YP_114346.1 53804061 3104043 2058151..2058426 1 NC_002977.6 hypothetical protein 2058426 3104043 MCA1912 Methylococcus capsulatus str. Bath hypothetical protein YP_114346.1 2058151 D 243233 CDS YP_114347.1 53804060 3104956 2058401..2058757 1 NC_002977.6 hypothetical protein 2058757 3104956 MCA1913 Methylococcus capsulatus str. Bath hypothetical protein YP_114347.1 2058401 D 243233 CDS YP_114348.1 53804059 3104955 2058741..2059004 1 NC_002977.6 hypothetical protein 2059004 3104955 MCA1914 Methylococcus capsulatus str. Bath hypothetical protein YP_114348.1 2058741 D 243233 CDS YP_114349.1 53804058 3102305 2059046..2062252 1 NC_002977.6 identified by match to protein family HMM PF00122; cation transporter E1-E2 family ATPase 2062252 3102305 MCA1915 Methylococcus capsulatus str. Bath cation transporter E1-E2 family ATPase YP_114349.1 2059046 D 243233 CDS YP_114350.1 53804050 3103470 2062292..2062732 1 NC_002977.6 hypothetical protein 2062732 3103470 MCA1916 Methylococcus capsulatus str. Bath hypothetical protein YP_114350.1 2062292 D 243233 CDS YP_114351.1 53804049 3103469 2062778..2063626 1 NC_002977.6 identified by similarity to OMNI:NTL02EC4339; match to protein family HMM PF04378; hypothetical protein 2063626 3103469 MCA1917 Methylococcus capsulatus str. Bath hypothetical protein YP_114351.1 2062778 D 243233 CDS YP_114352.1 53804048 3105044 complement(2063664..2064986) 1 NC_002977.6 identified by similarity to SP:P00393; match to protein family HMM PF00070; NADH dehydrogenase 2064986 ndh 3105044 ndh Methylococcus capsulatus str. Bath NADH dehydrogenase YP_114352.1 2063664 R 243233 CDS YP_114353.1 53804047 3105043 complement(2065027..2066016) 1 NC_002977.6 hypothetical protein 2066016 3105043 MCA1919 Methylococcus capsulatus str. Bath hypothetical protein YP_114353.1 2065027 R 243233 CDS YP_114354.1 53804046 3102228 2066195..2068351 1 NC_002977.6 identified by similarity to SP:P11585; match to protein family HMM PF01842; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; GTP pyrophosphokinase 2068351 relA 3102228 relA Methylococcus capsulatus str. Bath GTP pyrophosphokinase YP_114354.1 2066195 D 243233 CDS YP_114355.1 53804045 3102227 complement(2068527..2068901) 1 NC_002977.6 hypothetical protein 2068901 3102227 MCA1921 Methylococcus capsulatus str. Bath hypothetical protein YP_114355.1 2068527 R 243233 CDS YP_114356.1 53804044 3103320 complement(2069018..2070265) 1 NC_002977.6 identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase 2070265 3103320 MCA1922 Methylococcus capsulatus str. Bath glycerophosphoryl diester phosphodiesterase YP_114356.1 2069018 R 243233 CDS YP_114357.1 53804043 3103319 complement(2070513..2071328) 1 NC_002977.6 identified by similarity to OMNI:TM0812; match to protein family HMM PF00528; sugar ABC transporter permease 2071328 3103319 MCA1924 Methylococcus capsulatus str. Bath sugar ABC transporter permease YP_114357.1 2070513 R 243233 CDS YP_114358.1 53804034 3104719 complement(2071339..2071815) 1 NC_002977.6 identified by similarity to OMNI:NTL01SMB01298; match to protein family HMM PF07300; hypothetical protein 2071815 3104719 MCA1925 Methylococcus capsulatus str. Bath hypothetical protein YP_114358.1 2071339 R 243233 CDS YP_114359.1 53804033 3104718 2072014..2072604 1 NC_002977.6 identified by similarity to SP:P17552; ChrB domain-containing protein 2072604 3104718 MCA1926 Methylococcus capsulatus str. Bath ChrB domain-containing protein YP_114359.1 2072014 D 243233 CDS YP_114360.1 53804032 3103103 2072601..2073239 1 NC_002977.6 identified by similarity to OMNI:NTL02ML3828; hypothetical protein 2073239 3103103 MCA1927 Methylococcus capsulatus str. Bath hypothetical protein YP_114360.1 2072601 D 243233 CDS YP_114361.1 53804031 3103102 2073441..2073929 1 NC_002977.6 identified by similarity to GP:17134329; match to protein family HMM PF03413; hypothetical protein 2073929 3103102 MCA1928 Methylococcus capsulatus str. Bath hypothetical protein YP_114361.1 2073441 D 243233 CDS YP_114362.1 53804030 3103005 2074106..2076961 1 NC_002977.6 identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524; magnesium-translocating P-type ATPase 2076961 3103005 MCA1929 Methylococcus capsulatus str. Bath magnesium-translocating P-type ATPase YP_114362.1 2074106 D 243233 CDS YP_114363.1 53804029 3103004 2076980..2077291 1 NC_002977.6 identified by similarity to GP:19913962; match to protein family HMM PF02641; hypothetical protein 2077291 3103004 MCA1930 Methylococcus capsulatus str. Bath hypothetical protein YP_114363.1 2076980 D 243233 CDS YP_114364.1 53804028 3102577 2077499..2078227 1 NC_002977.6 hypothetical protein 2078227 3102577 MCA1931 Methylococcus capsulatus str. Bath hypothetical protein YP_114364.1 2077499 D 243233 CDS YP_114365.1 53804027 3102576 complement(2078371..2079531) 1 NC_002977.6 identified by match to protein family HMM PF07690; hypothetical protein 2079531 3102576 MCA1932 Methylococcus capsulatus str. Bath hypothetical protein YP_114365.1 2078371 R 243233 CDS YP_114366.1 53804026 3103596 complement(2080068..2081333) 1 NC_002977.6 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 2081333 eno 3103596 eno Methylococcus capsulatus str. Bath phosphopyruvate hydratase YP_114366.1 2080068 R 243233 CDS YP_114367.1 53804017 3102197 complement(2081344..2081442) 1 NC_002977.6 hypothetical protein 2081442 3102197 MCA1934 Methylococcus capsulatus str. Bath hypothetical protein YP_114367.1 2081344 R 243233 CDS YP_114368.1 53804016 3102754 complement(2081439..2084480) 1 NC_002977.6 AcrB/AcrD/AcrF family protein 2084480 3102754 MCA1935 Methylococcus capsulatus str. Bath AcrB/AcrD/AcrF family protein YP_114368.1 2081439 R 243233 CDS YP_114369.1 53804015 3102753 complement(2084480..2085529) 1 NC_002977.6 identified by similarity to SP:P94176; match to protein family HMM TIGR01730; transporter 2085529 3102753 MCA1936 Methylococcus capsulatus str. Bath transporter YP_114369.1 2084480 R 243233 CDS YP_114370.1 53804014 3102646 complement(2085540..2086925) 1 NC_002977.6 identified by match to protein family HMM PF02321; outer membrane efflux protein 2086925 3102646 MCA1937 Methylococcus capsulatus str. Bath outer membrane efflux protein YP_114370.1 2085540 R 243233 CDS YP_114371.1 53804013 3102645 complement(2086922..2088247) 1 NC_002977.6 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 2088247 3102645 MCA1938 Methylococcus capsulatus str. Bath sensor histidine kinase YP_114371.1 2086922 R 243233 CDS YP_114372.1 53804012 3103206 complement(2088244..2088909) 1 NC_002977.6 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 2088909 3103206 MCA1939 Methylococcus capsulatus str. Bath DNA-binding response regulator YP_114372.1 2088244 R 243233 CDS YP_114373.1 53804011 3103205 2089006..2089152 1 NC_002977.6 hypothetical protein 2089152 3103205 MCA1940 Methylococcus capsulatus str. Bath hypothetical protein YP_114373.1 2089006 D 243233 CDS YP_114374.1 53804010 3102722 2089178..2090482 1 NC_002977.6 identified by similarity to OMNI:NTL01LM1722; match to protein family HMM PF01547; sugar ABC transporter sugar-binding protein 2090482 3102722 MCA1941 Methylococcus capsulatus str. Bath sugar ABC transporter sugar-binding protein YP_114374.1 2089178 D 243233 CDS YP_114375.1 53804002 3103589 2090479..2091342 1 NC_002977.6 identified by similarity to SP:P29823; match to protein family HMM PF00528; sugar ABC transporter permease 2091342 3103589 MCA1942 Methylococcus capsulatus str. Bath sugar ABC transporter permease YP_114375.1 2090479 D 243233 CDS YP_114376.1 53804001 3103588 complement(2091533..2091859) 1 NC_002977.6 hypothetical protein 2091859 3103588 MCA1943 Methylococcus capsulatus str. Bath hypothetical protein YP_114376.1 2091533 R 243233 CDS YP_114377.1 53804000 3102159 2091907..2092977 1 NC_002977.6 identified by similarity to SP:P19566; match to protein family HMM PF00005; sugar ABC transporter, ATP-binding protein 2092977 3102159 MCA1944 Methylococcus capsulatus str. Bath sugar ABC transporter, ATP-binding protein YP_114377.1 2091907 D 243233 CDS YP_114378.1 53803999 3102158 complement(2092962..2093570) 1 NC_002977.6 identified by similarity to SP:P32173; molybdopterin-guanine dinucleotide biosynthesis protein MobA 2093570 mobA 3102158 mobA Methylococcus capsulatus str. Bath molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_114378.1 2092962 R 243233 CDS YP_114379.1 53803998 3104935 2093591..2094055 1 NC_002977.6 lipoprotein 2094055 3104935 MCA1946 Methylococcus capsulatus str. Bath lipoprotein YP_114379.1 2093591 D 243233 CDS YP_114380.1 53803997 3104934 2094082..2094546 1 NC_002977.6 identified by similarity to OMNI:NTL01SMB00166; hypothetical protein 2094546 3104934 MCA1947 Methylococcus capsulatus str. Bath hypothetical protein YP_114380.1 2094082 D 243233 CDS YP_114381.1 53803996 3104859 complement(2095156..2095698) 1 NC_002977.6 hypothetical protein 2095698 3104859 MCA1948 Methylococcus capsulatus str. Bath hypothetical protein YP_114381.1 2095156 R 243233 CDS YP_114382.1 53803995 3104858 complement(2095708..2096739) 1 NC_002977.6 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 2096739 moaA 3104858 moaA Methylococcus capsulatus str. Bath molybdenum cofactor biosynthesis protein A YP_114382.1 2095708 R 243233 CDS YP_114383.1 53803994 3102558 complement(2096844..2098361) 1 NC_002977.6 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 2098361 gnd 3102558 gnd Methylococcus capsulatus str. Bath 6-phosphogluconate dehydrogenase YP_114383.1 2096844 R 243233 CDS YP_114384.1 53803993 3102557 2098473..2100476 1 NC_002977.6 identified by similarity to GP:3493145; hypothetical protein 2100476 3102557 MCA1951 Methylococcus capsulatus str. Bath hypothetical protein YP_114384.1 2098473 D 243233 CDS YP_114385.1 53803992 3102417 2100596..2103409 1 NC_002977.6 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 2103409 sucA 3102417 sucA Methylococcus capsulatus str. Bath 2-oxoglutarate dehydrogenase E1 YP_114385.1 2100596 D 243233 CDS YP_114386.1 53803991 3102416 2103375..2104520 1 NC_002977.6 identified by similarity to SP:P07016; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01347; 2-oxoglutarate dehydrogenase E2 2104520 sucB 3102416 sucB Methylococcus capsulatus str. Bath 2-oxoglutarate dehydrogenase E2 YP_114386.1 2103375 D 243233 CDS YP_114387.2 161579539 3102540 complement(2104553..2106697) 1 NC_002977.6 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2106697 ppk 3102540 ppk Methylococcus capsulatus str. Bath polyphosphate kinase YP_114387.2 2104553 R 243233 CDS YP_114388.1 53803989 3102539 complement(2106910..2107518) 1 NC_002977.6 identified by similarity to SP:P35593; match to protein family HMM PF01641; match to protein family HMM TIGR00357; peptide methionine sulfoxide reductase 2107518 3102539 MCA1955 Methylococcus capsulatus str. Bath peptide methionine sulfoxide reductase YP_114388.1 2106910 R 243233 CDS YP_114389.1 53803982 3102398 complement(2107542..2108642) 1 NC_002977.6 identified by match to protein family HMM PF01609; ISMca1, transposase 2108642 3102398 MCA1956 Methylococcus capsulatus str. Bath ISMca1, transposase YP_114389.1 2107542 R 243233 CDS YP_114390.1 53803981 3102397 2109113..2111029 1 NC_002977.6 identified by similarity to OMNI:CC1750; match to protein family HMM PF00593; TonB-dependent receptor 2111029 3102397 MCA1957 Methylococcus capsulatus str. Bath TonB-dependent receptor YP_114390.1 2109113 D 243233 CDS YP_114391.1 53803980 3102263 complement(2111039..2111431) 1 NC_002977.6 identified by similarity to SP:P25663; match to protein family HMM PF04386; ClpXP protease specificity-enhancing factor 2111431 sspB 3102263 sspB Methylococcus capsulatus str. Bath ClpXP protease specificity-enhancing factor YP_114391.1 2111039 R 243233 CDS YP_114392.1 53803979 3102262 complement(2111428..2112081) 1 NC_002977.6 identified by match to protein family HMM PF00043; match to protein family HMM PF02798; stringent starvation protein A 2112081 sspA 3102262 sspA Methylococcus capsulatus str. Bath stringent starvation protein A YP_114392.1 2111428 R 243233 CDS YP_114393.1 53803978 3104209 complement(2112317..2113039) 1 NC_002977.6 identified by similarity to SP:P08501; match to protein family HMM PF02167; ubiquinol--cytochrome c reductase, cytochrome c1 2113039 petC 3104209 petC Methylococcus capsulatus str. Bath ubiquinol--cytochrome c reductase, cytochrome c1 YP_114393.1 2112317 R 243233 CDS YP_114394.1 53803977 3104208 complement(2113036..2114415) 1 NC_002977.6 identified by similarity to SP:P23134; match to protein family HMM PF00032; match to protein family HMM PF00033; ubiquinol--cytochrome c reductase, cytochrome B 2114415 petB 3104208 petB Methylococcus capsulatus str. Bath ubiquinol--cytochrome c reductase, cytochrome B YP_114394.1 2113036 R 243233 CDS YP_114395.1 53803976 3102077 complement(2114415..2115011) 1 NC_002977.6 identified by similarity to SP:P81380; match to protein family HMM PF00355; match to protein family HMM TIGR01416; ubiquinol-cytochrome c reductase, iron-sulfur subunit 2115011 petA 3102077 petA Methylococcus capsulatus str. Bath ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_114395.1 2114415 R 243233 CDS YP_114396.1 53803969 3102435 complement(2115248..2116558) 1 NC_002977.6 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2116558 hisD 3102435 hisD Methylococcus capsulatus str. Bath histidinol dehydrogenase YP_114396.1 2115248 R 243233 CDS YP_114397.1 53803968 3103911 complement(2116563..2117204) 1 NC_002977.6 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase 2117204 hisG 3103911 hisG Methylococcus capsulatus str. Bath ATP phosphoribosyltransferase YP_114397.1 2116563 R 243233 CDS YP_114398.1 53803967 3103910 complement(2117209..2118474) 1 NC_002977.6 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2118474 murA 3103910 murA Methylococcus capsulatus str. Bath UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_114398.1 2117209 R 243233 CDS YP_114399.1 53803966 3103177 complement(2118467..2118829) 1 NC_002977.6 identified by match to protein family HMM PF01740; STAS domain-containing protein 2118829 3103177 MCA1966 Methylococcus capsulatus str. Bath STAS domain-containing protein YP_114399.1 2118467 R 243233 CDS YP_114400.1 53803965 3103176 complement(2118832..2119332) 1 NC_002977.6 identified by similarity to GP:4336800; match to protein family HMM PF02470; hypothetical protein 2119332 3103176 MCA1967 Methylococcus capsulatus str. Bath hypothetical protein YP_114400.1 2118832 R 243233 CDS YP_114401.1 53803964 3102216 complement(2119336..2120127) 1 NC_002977.6 identified by similarity to OMNI:VC2519; match to protein family HMM PF02405; match to protein family HMM TIGR00056; hypothetical protein 2120127 3102216 MCA1968 Methylococcus capsulatus str. Bath hypothetical protein YP_114401.1 2119336 R 243233 CDS YP_114402.1 53803963 3102215 complement(2120124..2120951) 1 NC_002977.6 identified by similarity to SP:P45393; match to protein family HMM PF00005; ABC transporter ATP-binding protein 2120951 3102215 MCA1969 Methylococcus capsulatus str. Bath ABC transporter ATP-binding protein YP_114402.1 2120124 R 243233 CDS YP_114403.1 53803953 3104615 complement(2121755..2123038) 1 NC_002977.6 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2123038 serS 3104615 serS Methylococcus capsulatus str. Bath seryl-tRNA synthetase YP_114403.1 2121755 R 243233 CDS YP_114404.1 53803952 3104294 complement(2123046..2123198) 1 NC_002977.6 hypothetical protein 2123198 3104294 MCA1972 Methylococcus capsulatus str. Bath hypothetical protein YP_114404.1 2123046 R 243233 CDS YP_114405.1 53803951 3104293 complement(2123269..2123955) 1 NC_002977.6 identified by similarity to SP:Q9KVS9; match to protein family HMM PF02537; match to protein family HMM TIGR00494; crcB protein domain-containing protein 2123955 3104293 MCA1973 Methylococcus capsulatus str. Bath crcB protein domain-containing protein YP_114405.1 2123269 R 243233 CDS YP_114406.1 53803950 3104215 complement(2123952..2125010) 1 NC_002977.6 identified by similarity to SP:Q9PAG5; match to protein family HMM PF01008; match to protein family HMM TIGR00524; initiation factor 2 subunit family protein 2125010 3104215 MCA1974 Methylococcus capsulatus str. Bath initiation factor 2 subunit family protein YP_114406.1 2123952 R 243233 CDS YP_114407.1 53803949 3104214 complement(2125114..2125866) 1 NC_002977.6 identified by similarity to OMNI:VC2598; match to protein family HMM PF00588; match to protein family HMM TIGR00186; RNA methyltransferase 2125866 3104214 MCA1975 Methylococcus capsulatus str. Bath RNA methyltransferase YP_114407.1 2125114 R 243233 CDS YP_114408.1 53803948 3102196 complement(2125863..2128130) 1 NC_002977.6 identified by similarity to SP:P21499; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R 2128130 vacB 3102196 vacB Methylococcus capsulatus str. Bath ribonuclease R YP_114408.1 2125863 R 243233 CDS YP_114409.1 53803947 3102195 2128535..2128687 1 NC_002977.6 phage integrase site specific recombinase 2128687 3102195 MCA1977 Methylococcus capsulatus str. Bath phage integrase site specific recombinase YP_114409.1 2128535 D 243233 CDS YP_114410.1 53803946 3105053 complement(2128929..2130227) 1 NC_002977.6 identified by match to protein family HMM PF00709; match to protein family HMM TIGR00184; adenylosuccinate synthetase 2130227 purA 3105053 purA Methylococcus capsulatus str. Bath adenylosuccinate synthetase YP_114410.1 2128929 R 243233 CDS YP_114411.1 53803937 3102894 complement(2130298..2131518) 1 NC_002977.6 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase 2131518 3102894 MCA1979 Methylococcus capsulatus str. Bath ATP phosphoribosyltransferase YP_114411.1 2130298 R 243233 CDS YP_114412.1 53803936 3103302 complement(2131647..2132510) 1 NC_002977.6 identified by similarity to SP:P25661; match to protein family HMM PF01145; match to protein family HMM TIGR01932; hflC protein 2132510 hflC 3103302 hflC Methylococcus capsulatus str. Bath hflC protein YP_114412.1 2131647 R 243233 CDS YP_114413.1 53803935 3103301 complement(2132510..2133721) 1 NC_002977.6 identified by similarity to SP:P25662; match to protein family HMM PF01145; match to protein family HMM TIGR01933; hflK protein 2133721 hflK 3103301 hflK Methylococcus capsulatus str. Bath hflK protein YP_114413.1 2132510 R 243233 CDS YP_114414.1 53803934 3103254 complement(2133823..2135124) 1 NC_002977.6 identified by similarity to SP:P25519; match to protein family HMM TIGR00231; GTP-binding protein 2135124 3103254 MCA1982 Methylococcus capsulatus str. Bath GTP-binding protein YP_114414.1 2133823 R 243233 CDS YP_114415.1 53803766 3102156 complement(2135172..2135420) 1 NC_002977.6 identified by similarity to SP:P25521; match to protein family HMM PF01423; hfq protein 2135420 hfq 3102156 hfq Methylococcus capsulatus str. Bath hfq protein YP_114415.1 2135172 R 243233 CDS YP_114416.1 53803933 3103253 2135733..2136737 1 NC_002977.6 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 2136737 3103253 MCA1984 Methylococcus capsulatus str. Bath beta-hexosaminidase YP_114416.1 2135733 D 243233 CDS YP_114417.1 53803765 3102155 2136734..2137297 1 NC_002977.6 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase 2137297 3102155 MCA1985 Methylococcus capsulatus str. Bath hypoxanthine-guanine phosphoribosyltransferase YP_114417.1 2136734 D 243233 CDS YP_114418.1 53803758 3103788 2137299..2138039 1 NC_002977.6 Catalyzes the phosphorolytic cleavage of 6-oxopurine nucleosides; 5'-methylthioadenosine phosphorylase 2138039 3103788 MCA1986 Methylococcus capsulatus str. Bath 5'-methylthioadenosine phosphorylase YP_114418.1 2137299 D 243233 CDS YP_114419.1 53803757 3103787 complement(2138046..2138492) 1 NC_002977.6 identified by similarity to GP:19879576; sulfur compound-chelating protein SoxY 2138492 soxY 3103787 soxY Methylococcus capsulatus str. Bath sulfur compound-chelating protein SoxY YP_114419.1 2138046 R 243233 CDS YP_114420.1 53803756 3102048 2138578..2138919 1 NC_002977.6 hypothetical protein 2138919 3102048 MCA1988 Methylococcus capsulatus str. Bath hypothetical protein YP_114420.1 2138578 D 243233 CDS YP_114421.1 53803755 3102047 2138921..2139223 1 NC_002977.6 identified by similarity to GP:19879577; sulfur compound-chelating protein SoxZ 2139223 soxZ 3102047 soxZ Methylococcus capsulatus str. Bath sulfur compound-chelating protein SoxZ YP_114421.1 2138921 D 243233 CDS YP_114422.1 53803754 3104261 complement(2139224..2140804) 1 NC_002977.6 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 2140804 prfC 3104261 prfC Methylococcus capsulatus str. Bath peptide chain release factor 3 YP_114422.1 2139224 R 243233 CDS YP_114423.1 53803753 3104260 complement(2140889..2142826) 1 NC_002977.6 identified by similarity to SP:P54394; ATP-dependent helicase 2142826 3104260 MCA1991 Methylococcus capsulatus str. Bath ATP-dependent helicase YP_114423.1 2140889 R 243233 CDS YP_114424.1 53803752 3104544 complement(2142828..2143358) 1 NC_002977.6 hypothetical protein 2143358 3104544 MCA1992 Methylococcus capsulatus str. Bath hypothetical protein YP_114424.1 2142828 R 243233 CDS YP_114425.1 53803751 3104543 complement(2143413..2144261) 1 NC_002977.6 identified by similarity to SP:P37346; match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family deoxyribonuclease 2144261 3104543 MCA1993 Methylococcus capsulatus str. Bath TatD family deoxyribonuclease YP_114425.1 2143413 R 243233 CDS YP_114426.1 53803741 3104224 complement(2144230..2144586) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA02960; match to protein family HMM PF07238; type 4 fimbrial biogenesis protein PilZ 2144586 pilZ 3104224 pilZ Methylococcus capsulatus str. Bath type 4 fimbrial biogenesis protein PilZ YP_114426.1 2144230 R 243233 CDS YP_114427.1 53803740 3104387 complement(2144583..2145590) 1 NC_002977.6 identified by similarity to SP:P28631; DNA polymerase III subunit delta' 2145590 holB 3104387 holB Methylococcus capsulatus str. Bath DNA polymerase III subunit delta' YP_114427.1 2144583 R 243233 CDS YP_114428.1 53803739 3104386 complement(2145583..2146209) 1 NC_002977.6 identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041; thymidylate kinase 2146209 tmk 3104386 tmk Methylococcus capsulatus str. Bath thymidylate kinase YP_114428.1 2145583 R 243233 CDS YP_114429.1 53803738 3104738 complement(2146206..2147201) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA02963; match to protein family HMM PF02618; match to protein family HMM TIGR00247; hypothetical protein 2147201 3104738 MCA1997 Methylococcus capsulatus str. Bath hypothetical protein YP_114429.1 2146206 R 243233 CDS YP_114430.1 53803737 3104737 complement(2147198..2148028) 1 NC_002977.6 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 2148028 pabC 3104737 pabC Methylococcus capsulatus str. Bath 4-amino-4-deoxychorismate lyase YP_114430.1 2147198 R 243233 CDS YP_114431.1 53803736 3103219 complement(2148086..2149291) 1 NC_002977.6 identified by similarity to SP:P39435; match to protein family HMM PF00109; match to protein family HMM PF02801; 3-oxoacyl-ACP synthase 2149291 fabF 3103219 fabF Methylococcus capsulatus str. Bath 3-oxoacyl-ACP synthase YP_114431.1 2148086 R 243233 CDS YP_114432.1 53803735 3103218 complement(2149406..2149636) 1 NC_002977.6 identified by similarity to SP:P02901; match to protein family HMM PF00550; match to protein family HMM TIGR00517; acyl carrier protein 2149636 acpP 3103218 acpP Methylococcus capsulatus str. Bath acyl carrier protein YP_114432.1 2149406 R 243233 CDS YP_114433.1 53803726 3102381 complement(2149729..2150466) 1 NC_002977.6 identified by similarity to SP:P25716; match to protein family HMM PF00106; match to protein family HMM TIGR01830; 3-oxoacyl-ACP reductase 2150466 fabG 3102381 fabG Methylococcus capsulatus str. Bath 3-oxoacyl-ACP reductase YP_114433.1 2149729 R 243233 CDS YP_114434.1 53803725 3102380 complement(2150463..2151419) 1 NC_002977.6 identified by similarity to SP:P25715; match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 2151419 fabD 3102380 fabD Methylococcus capsulatus str. Bath malonyl CoA-acyl carrier protein transacylase YP_114434.1 2150463 R 243233 CDS YP_114435.1 53803724 3103003 complement(2151432..2152397) 1 NC_002977.6 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 2152397 fabH-1 3103003 fabH-1 Methylococcus capsulatus str. Bath 3-oxoacyl-ACP synthase YP_114435.1 2151432 R 243233 CDS YP_114436.1 53803723 3103002 complement(2152394..2153413) 1 NC_002977.6 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 2153413 plsX 3103002 plsX Methylococcus capsulatus str. Bath glycerol-3-phosphate acyltransferase PlsX YP_114436.1 2152394 R 243233 CDS YP_114437.1 53803722 3103107 complement(2153492..2153686) 1 NC_002977.6 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 2153686 rpmF 3103107 rpmF Methylococcus capsulatus str. Bath 50S ribosomal protein L32 YP_114437.1 2153492 R 243233 CDS YP_114438.1 53803721 3103106 complement(2153696..2154211) 1 NC_002977.6 identified by match to protein family HMM PF02620; hypothetical protein 2154211 3103106 MCA2006 Methylococcus capsulatus str. Bath hypothetical protein YP_114438.1 2153696 R 243233 CDS YP_114439.1 53803720 3103086 2154268..2154867 1 NC_002977.6 identified by similarity to SP:Q02169; match to protein family HMM PF02545; match to protein family HMM TIGR00172; maf protein 2154867 maf-2 3103086 maf-2 Methylococcus capsulatus str. Bath maf protein YP_114439.1 2154268 D 243233 CDS YP_114440.1 53803710 3103646 complement(2154890..2155534) 1 NC_002977.6 identified by similarity to GP:17427990; match to protein family HMM PF01464; transglycosylase 2155534 3103646 MCA2008 Methylococcus capsulatus str. Bath transglycosylase YP_114440.1 2154890 R 243233 CDS YP_114441.1 53803709 3103645 complement(2155604..2156806) 1 NC_002977.6 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 2156806 purT 3103645 purT Methylococcus capsulatus str. Bath phosphoribosylglycinamide formyltransferase 2 YP_114441.1 2155604 R 243233 CDS YP_114442.1 53803708 3103147 complement(2156922..2158727) 1 NC_002977.6 identified by match to protein family HMM PF03160; calx-beta domain-containg protein 2158727 3103147 MCA2010 Methylococcus capsulatus str. Bath calx-beta domain-containg protein YP_114442.1 2156922 R 243233 CDS YP_114443.1 53803707 3103146 complement(2158983..2160695) 1 NC_002977.6 identified by similarity to SP:Q8Z9E1; match to protein family HMM TIGR01409; multicopper oxidase 2160695 3103146 MCA2011 Methylococcus capsulatus str. Bath multicopper oxidase YP_114443.1 2158983 R 243233 CDS YP_114444.1 53803706 3102967 2160842..2161606 1 NC_002977.6 hypothetical protein 2161606 3102967 MCA2012 Methylococcus capsulatus str. Bath hypothetical protein YP_114444.1 2160842 D 243233 CDS YP_114445.1 53803705 3102966 2161701..2163452 1 NC_002977.6 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 2163452 proS 3102966 proS Methylococcus capsulatus str. Bath prolyl-tRNA synthetase YP_114445.1 2161701 D 243233 CDS YP_114446.1 53803704 3103860 2163509..2164072 1 NC_002977.6 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 2164072 hslV 3103860 hslV Methylococcus capsulatus str. Bath ATP-dependent protease peptidase subunit YP_114446.1 2163509 D 243233 CDS YP_114447.1 53803703 3103859 2164069..2165391 1 NC_002977.6 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 2165391 hslU 3103859 hslU Methylococcus capsulatus str. Bath ATP-dependent protease ATP-binding subunit HslU YP_114447.1 2164069 D 243233 CDS YP_114448.1 53803694 3103628 2165388..2165753 1 NC_002977.6 identified by similarity to GP:17427467; match to protein family HMM PF06155; hypothetical protein 2165753 3103628 MCA2016 Methylococcus capsulatus str. Bath hypothetical protein YP_114448.1 2165388 D 243233 CDS YP_114449.1 53803693 3103627 2165781..2166527 1 NC_002977.6 identified by similarity to SP:P27851; match to protein family HMM PF01209; match to protein family HMM TIGR01934; ubiquinone/menaquinone biosynthesis methlytransferase UbiE 2166527 ubiE 3103627 ubiE Methylococcus capsulatus str. Bath ubiquinone/menaquinone biosynthesis methlytransferase UbiE YP_114449.1 2165781 D 243233 CDS YP_114450.1 53803692 3103998 2166530..2167192 1 NC_002977.6 identified by similarity to OMNI:NTL03PA05065; match to protein family HMM PF06843; hypothetical protein 2167192 3103998 MCA2018 Methylococcus capsulatus str. Bath hypothetical protein YP_114450.1 2166530 D 243233 CDS YP_114451.1 53803691 3103997 2167189..2168817 1 NC_002977.6 identified by similarity to SP:P27854; match to protein family HMM PF03109; match to protein family HMM TIGR01982; ubiquinone biosynthesis protein AarF 2168817 3103997 MCA2019 Methylococcus capsulatus str. Bath ubiquinone biosynthesis protein AarF YP_114451.1 2167189 D 243233 CDS YP_114452.1 53803690 3104830 2168884..2169441 1 NC_002977.6 identified by similarity to GP:2564974; hypothetical protein 2169441 3104830 MCA2020 Methylococcus capsulatus str. Bath hypothetical protein YP_114452.1 2168884 D 243233 CDS YP_114453.1 53803689 3104829 2169482..2170657 1 NC_002977.6 identified by similarity to SP:P11665; match to protein family HMM PF00162; phosphoglycerate kinase 2170657 pgk 3104829 pgk Methylococcus capsulatus str. Bath phosphoglycerate kinase YP_114453.1 2169482 D 243233 CDS YP_114454.1 53803688 3103093 2170789..2171070 1 NC_002977.6 identified by similarity to SP:P08374; match to protein family HMM PF01192; match to protein family HMM TIGR00690; DNA-directed RNA polymerase subunit omega 2171070 rpoZ 3103093 rpoZ Methylococcus capsulatus str. Bath DNA-directed RNA polymerase subunit omega YP_114454.1 2170789 D 243233 CDS YP_114455.1 53803680 3105018 2171099..2173306 1 NC_002977.6 identified by similarity to SP:P17580; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase 2173306 spoT 3105018 spoT Methylococcus capsulatus str. Bath guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase YP_114455.1 2171099 D 243233 CDS YP_114456.1 53803679 3105017 2173313..2173699 1 NC_002977.6 identified by similarity to SP:P40431; match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP 2173699 3105017 MCA2024 Methylococcus capsulatus str. Bath endoribonuclease L-PSP YP_114456.1 2173313 D 243233 CDS YP_114457.1 53803678 3104152 2173712..2175787 1 NC_002977.6 identified by similarity to SP:P24230; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00643; ATP-dependent DNA helicase RecG 2175787 recG 3104152 recG Methylococcus capsulatus str. Bath ATP-dependent DNA helicase RecG YP_114457.1 2173712 D 243233 CDS YP_114458.1 53803677 3104151 2175864..2176211 1 NC_002977.6 hypothetical protein 2176211 3104151 MCA2026 Methylococcus capsulatus str. Bath hypothetical protein YP_114458.1 2175864 D 243233 CDS YP_114459.1 53803676 3103986 complement(2176241..2176585) 1 NC_002977.6 identified by similarity to GP:16501893; match to protein family HMM PF02410; match to protein family HMM TIGR00090; iojap family protein 2176585 3103986 MCA2027 Methylococcus capsulatus str. Bath iojap family protein YP_114459.1 2176241 R 243233 CDS YP_114460.1 53803675 3103985 complement(2176844..2178532) 1 NC_002977.6 identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476; membrane-bound lytic murein transglycosylase 2178532 3103985 MCA2028 Methylococcus capsulatus str. Bath membrane-bound lytic murein transglycosylase YP_114460.1 2176844 R 243233 CDS YP_114461.1 53803674 3103038 2178592..2179332 1 NC_002977.6 hypothetical protein 2179332 3103038 MCA2029 Methylococcus capsulatus str. Bath hypothetical protein YP_114461.1 2178592 D 243233 CDS YP_114462.1 53803673 3103037 complement(2179629..2179808) 1 NC_002977.6 hypothetical protein 2179808 3103037 MCA2030 Methylococcus capsulatus str. Bath hypothetical protein YP_114462.1 2179629 R 243233 CDS YP_114463.1 53803665 3104527 complement(2179950..2180099) 1 NC_002977.6 hypothetical protein 2180099 3104527 MCA2031 Methylococcus capsulatus str. Bath hypothetical protein YP_114463.1 2179950 R 243233 CDS YP_114464.1 53803664 3102696 complement(2180108..2181199) 1 NC_002977.6 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 2181199 3102696 MCA2032 Methylococcus capsulatus str. Bath GTP-dependent nucleic acid-binding protein EngD YP_114464.1 2180108 R 243233 CDS YP_114465.1 53803663 3102695 complement(2181212..2182669) 1 NC_002977.6 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479; mannose-1-phosphate guanylyltransferase 2182669 3102695 MCA2033 Methylococcus capsulatus str. Bath mannose-1-phosphate guanylyltransferase YP_114465.1 2181212 R 243233 CDS YP_114466.1 53803662 3104362 complement(2182690..2183967) 1 NC_002977.6 identified by similarity to SP:P23282; match to protein family HMM PF04413; 3-deoxy-D-manno-octulosonic-acid transferase 2183967 kdtA 3104362 kdtA Methylococcus capsulatus str. Bath 3-deoxy-D-manno-octulosonic-acid transferase YP_114466.1 2182690 R 243233 CDS YP_114467.1 53803661 3104361 complement(2183996..2184442) 1 NC_002977.6 identified by similarity to SP:P02418; match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158; 50S ribosomal protein L9 2184442 rplI 3104361 rplI Methylococcus capsulatus str. Bath 50S ribosomal protein L9 YP_114467.1 2183996 R 243233 CDS YP_114468.1 53803660 3104640 complement(2184499..2185380) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04934; hypothetical protein 2185380 3104640 MCA2036 Methylococcus capsulatus str. Bath hypothetical protein YP_114468.1 2184499 R 243233 CDS YP_114469.1 53803659 3104639 complement(2185441..2185671) 1 NC_002977.6 identified by similarity to SP:P02374; match to protein family HMM PF01084; match to protein family HMM TIGR00165; 30S ribosomal protein S18 2185671 rpsR 3104639 rpsR Methylococcus capsulatus str. Bath 30S ribosomal protein S18 YP_114469.1 2185441 R 243233 CDS YP_114470.2 161579540 3104133 complement(2185728..2186138) 1 NC_002977.6 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 2186138 rpsF 3104133 rpsF Methylococcus capsulatus str. Bath 30S ribosomal protein S6 YP_114470.2 2185728 R 243233 CDS YP_114471.1 53803650 3104459 2186503..2191131 1 NC_002977.6 identified by similarity to SP:P39812; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898; glutamate synthase 2191131 gltB 3104459 gltB Methylococcus capsulatus str. Bath glutamate synthase YP_114471.1 2186503 D 243233 CDS YP_114472.1 53803649 3104458 2191170..2192609 1 NC_002977.6 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase 2192609 gltD 3104458 gltD Methylococcus capsulatus str. Bath glutamate synthase YP_114472.1 2191170 D 243233 CDS YP_114473.1 53803648 3103958 2192769..2194226 1 NC_002977.6 identified by similarity to SP:P21166; match to protein family HMM PF02386; TrkH family potassium uptake protein 2194226 3103958 MCA2041 Methylococcus capsulatus str. Bath TrkH family potassium uptake protein YP_114473.1 2192769 D 243233 CDS YP_114474.1 53803647 3103274 2196052..2198040 1 NC_002977.6 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 2198040 acs 3103274 acs Methylococcus capsulatus str. Bath acetyl-CoA synthetase YP_114474.1 2196052 D 243233 CDS YP_114475.1 53803646 3103273 2198095..2198433 1 NC_002977.6 identified by similarity to SP:P05826; match to protein family HMM PF00543; nitrogen regulatory protein P-II 2198433 3103273 MCA2044 Methylococcus capsulatus str. Bath nitrogen regulatory protein P-II YP_114475.1 2198095 D 243233 CDS YP_114476.1 53803645 3104312 complement(2198498..2199070) 1 NC_002977.6 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 2199070 3104312 MCA2045 Methylococcus capsulatus str. Bath MarR family transcriptional regulator YP_114476.1 2198498 R 243233 CDS YP_114477.1 53803635 3104171 complement(2199127..2199984) 1 NC_002977.6 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 2199984 speE 3104171 speE Methylococcus capsulatus str. Bath spermidine synthase YP_114477.1 2199127 R 243233 CDS YP_114478.1 53803634 3104170 2200054..2201931 1 NC_002977.6 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 2201931 speA 3104170 speA Methylococcus capsulatus str. Bath arginine decarboxylase YP_114478.1 2200054 D 243233 CDS YP_114479.1 53803633 3102281 2201934..2202803 1 NC_002977.6 identified by similarity to OMNI:CC1574; match to protein family HMM PF03446; Gfo/Idh/MocA family oxidoreductase 2202803 3102281 MCA2048 Methylococcus capsulatus str. Bath Gfo/Idh/MocA family oxidoreductase YP_114479.1 2201934 D 243233 CDS YP_114480.1 53803632 3102280 2202857..2203786 1 NC_002977.6 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 2203786 glyQ 3102280 glyQ Methylococcus capsulatus str. Bath glycyl-tRNA synthetase subunit alpha YP_114480.1 2202857 D 243233 CDS YP_114481.1 53803631 3103025 2203779..2205860 1 NC_002977.6 identified by similarity to SP:P00961; match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211; glycyl-tRNA synthetase subunit beta 2205860 glyS 3103025 glyS Methylococcus capsulatus str. Bath glycyl-tRNA synthetase subunit beta YP_114481.1 2203779 D 243233 CDS YP_114482.1 53803630 3103024 2205862..2206401 1 NC_002977.6 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 2206401 3103024 MCA2051 Methylococcus capsulatus str. Bath D,D-heptose 1,7-bisphosphate phosphatase YP_114482.1 2205862 D 243233 CDS YP_114483.1 53803629 3104927 2206364..2207113 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00006; match to protein family HMM PF01553; 1-acyl-sn-glycerol-3-phosphate acyltransferase 2207113 3104927 MCA2052 Methylococcus capsulatus str. Bath 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_114483.1 2206364 D 243233 CDS YP_114484.1 53803622 3104367 complement(2207124..2208326) 1 NC_002977.6 identified by match to protein family HMM PF00155; aminotransferase 2208326 3104367 MCA2053 Methylococcus capsulatus str. Bath aminotransferase YP_114484.1 2207124 R 243233 CDS YP_114485.1 53803621 3102890 2208540..2208860 1 NC_002977.6 hypothetical protein 2208860 3102890 MCA2054 Methylococcus capsulatus str. Bath hypothetical protein YP_114485.1 2208540 D 243233 CDS YP_114486.1 53803620 3102889 complement(2208843..2209607) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA01734; hypothetical protein 2209607 3102889 MCA2055 Methylococcus capsulatus str. Bath hypothetical protein YP_114486.1 2208843 R 243233 CDS YP_114487.1 53803619 3103725 2209942..2211390 1 NC_002977.6 identified by similarity to SP:Q55587; match to protein family HMM PF04169; match to protein family HMM PF04174; hypothetical protein 2211390 3103725 MCA2056 Methylococcus capsulatus str. Bath hypothetical protein YP_114487.1 2209942 D 243233 CDS YP_114488.1 53803618 3103724 2211392..2212360 1 NC_002977.6 identified by similarity to GP:1651826; match to protein family HMM PF04168; hypothetical protein 2212360 3103724 MCA2057 Methylococcus capsulatus str. Bath hypothetical protein YP_114488.1 2211392 D 243233 CDS YP_114489.1 53803617 3103858 complement(2212433..2213845) 1 NC_002977.6 transporter 2213845 3103858 MCA2058 Methylococcus capsulatus str. Bath transporter YP_114489.1 2212433 R 243233 CDS YP_114490.1 53803616 3103857 2214069..2215715 1 NC_002977.6 identified by match to protein family HMM PF01077; match to protein family HMM PF03460; nitrite/sulfite reductase 2215715 3103857 MCA2059 Methylococcus capsulatus str. Bath nitrite/sulfite reductase YP_114490.1 2214069 D 243233 CDS YP_114491.1 53803615 3103329 2215702..2216187 1 NC_002977.6 identified by similarity to OMNI:NTL03PA01838; match to protein family HMM PF06073; hypothetical protein 2216187 3103329 MCA2060 Methylococcus capsulatus str. Bath hypothetical protein YP_114491.1 2215702 D 243233 CDS YP_114492.1 53803932 3104465 complement(2216251..2218710) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA03115; hypothetical protein 2218710 3104465 MCA2061 Methylococcus capsulatus str. Bath hypothetical protein YP_114492.1 2216251 R 243233 CDS YP_114493.1 53803931 3104464 complement(2218771..2219793) 1 NC_002977.6 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; aspartate-semialdehyde dehydrogenase 2219793 asd 3104464 asd Methylococcus capsulatus str. Bath aspartate-semialdehyde dehydrogenase YP_114493.1 2218771 R 243233 CDS YP_114494.1 53803930 3104138 complement(2219854..2220936) 1 NC_002977.6 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 2220936 leuB 3104138 leuB Methylococcus capsulatus str. Bath 3-isopropylmalate dehydrogenase YP_114494.1 2219854 R 243233 CDS YP_114495.1 53803915 3102443 complement(2220965..2221603) 1 NC_002977.6 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 2221603 leuD 3102443 leuD Methylococcus capsulatus str. Bath isopropylmalate isomerase small subunit YP_114495.1 2220965 R 243233 CDS YP_114496.1 53803914 3103652 complement(2221600..2223012) 1 NC_002977.6 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 2223012 leuC 3103652 leuC Methylococcus capsulatus str. Bath isopropylmalate isomerase large subunit YP_114496.1 2221600 R 243233 CDS YP_114497.1 53803913 3103651 complement(2223048..2223692) 1 NC_002977.6 identified by similarity to SP:P39068; match to protein family HMM PF00406; match to protein family HMM PF05191; match to protein family HMM TIGR01351; adenylate kinase 2223692 adk 3103651 adk Methylococcus capsulatus str. Bath adenylate kinase YP_114497.1 2223048 R 243233 CDS YP_114498.1 53803912 3102328 complement(2224263..2224895) 1 NC_002977.6 identified by similarity to SP:P37369; match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase, Fe 2224895 sodB-1 3102328 sodB-1 Methylococcus capsulatus str. Bath superoxide dismutase, Fe YP_114498.1 2224263 R 243233 CDS YP_114499.1 53803911 3102327 complement(2225038..2225379) 1 NC_002977.6 identified by match to protein family HMM PF03831; match to protein family HMM TIGR00686; alkylphosphonate utilization protein PhnA 2225379 phnA 3102327 phnA Methylococcus capsulatus str. Bath alkylphosphonate utilization protein PhnA YP_114499.1 2225038 R 243233 CDS YP_114500.1 53803910 3102660 complement(2226194..2228509) 1 NC_002977.6 identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00277; sensory box protein 2228509 3102660 MCA2070 Methylococcus capsulatus str. Bath sensory box protein YP_114500.1 2226194 R 243233 CDS YP_114501.1 53803909 3102659 complement(2228600..2229226) 1 NC_002977.6 hypothetical protein 2229226 3102659 MCA2071 Methylococcus capsulatus str. Bath hypothetical protein YP_114501.1 2228600 R 243233 CDS YP_114502.1 53803908 3102623 complement(2229291..2231468) 1 NC_002977.6 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 2231468 3102623 MCA2072 Methylococcus capsulatus str. Bath copper-translocating P-type ATPase YP_114502.1 2229291 R 243233 CDS YP_114503.1 53803898 3103198 complement(2231742..2232050) 1 NC_002977.6 hypothetical protein 2232050 3103198 MCA2073 Methylococcus capsulatus str. Bath hypothetical protein YP_114503.1 2231742 R 243233 CDS YP_114504.1 53803897 3103197 2232358..2234583 1 NC_002977.6 identified by similarity to SP:P76115; match to protein family HMM PF00593; TonB domain-containing protein 2234583 3103197 MCA2074 Methylococcus capsulatus str. Bath TonB domain-containing protein YP_114504.1 2232358 D 243233 CDS YP_114505.1 53803896 3104587 2234643..2235686 1 NC_002977.6 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 2235686 pyrC 3104587 pyrC Methylococcus capsulatus str. Bath dihydroorotase YP_114505.1 2234643 D 243233 CDS YP_114506.1 53803895 3104586 complement(2235746..2236600) 1 NC_002977.6 identified by similarity to SP:P76506; match to protein family HMM PF04333; vacJ lipoprotein 2236600 vacJ 3104586 vacJ Methylococcus capsulatus str. Bath vacJ lipoprotein YP_114506.1 2235746 R 243233 CDS YP_114507.1 53803894 3103856 2236751..2237380 1 NC_002977.6 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 2237380 rnt 3103856 rnt Methylococcus capsulatus str. Bath ribonuclease T YP_114507.1 2236751 D 243233 CDS YP_114508.1 53803893 3103855 complement(2237391..2237723) 1 NC_002977.6 identified by similarity to GP:19880969; match to protein family HMM PF00462; match to protein family HMM TIGR00365; glutaredoxin-like protein 2237723 3103855 MCA2078 Methylococcus capsulatus str. Bath glutaredoxin-like protein YP_114508.1 2237391 R 243233 CDS YP_114509.1 53803892 3105055 2237952..2239127 1 NC_002977.6 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 2239127 argD 3105055 argD Methylococcus capsulatus str. Bath acetylornithine aminotransferase YP_114509.1 2237952 D 243233 CDS YP_114510.1 53803891 3105054 2239152..2240048 1 NC_002977.6 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 2240048 atpD-2 3105054 atpD-2 Methylococcus capsulatus str. Bath ornithine carbamoyltransferase YP_114510.1 2239152 D 243233 CDS YP_114511.1 53803882 3104478 2240167..2240730 1 NC_002977.6 hypothetical protein 2240730 3104478 MCA2081 Methylococcus capsulatus str. Bath hypothetical protein YP_114511.1 2240167 D 243233 CDS YP_114512.1 53803881 3104477 2240777..2242465 1 NC_002977.6 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 2242465 ilvD 3104477 ilvD Methylococcus capsulatus str. Bath dihydroxy-acid dehydratase YP_114512.1 2240777 D 243233 CDS YP_114513.1 53803880 3104536 2242484..2243650 1 NC_002977.6 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 2243650 argE 3104536 argE Methylococcus capsulatus str. Bath acetylornithine deacetylase YP_114513.1 2242484 D 243233 CDS YP_114514.1 53803879 3104535 2243667..2245013 1 NC_002977.6 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 2245013 argA 3104535 argA Methylococcus capsulatus str. Bath N-acetylglutamate synthase YP_114514.1 2243667 D 243233 CDS YP_114515.1 53803878 3104448 2245019..2245798 1 NC_002977.6 identified by similarity to SP:P36650; match to protein family HMM PF00149; cyclic AMP phosphodiesterase 2245798 cpdA 3104448 cpdA Methylococcus capsulatus str. Bath cyclic AMP phosphodiesterase YP_114515.1 2245019 D 243233 CDS YP_114516.1 53803877 3104447 complement(2245711..2246286) 1 NC_002977.6 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 2246286 3104447 MCA2086 Methylococcus capsulatus str. Bath dinucleoside polyphosphate hydrolase YP_114516.1 2245711 R 243233 CDS YP_114517.1 53803876 3104150 2246474..2247136 1 NC_002977.6 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; HAD family hydrolase 2247136 3104150 MCA2087 Methylococcus capsulatus str. Bath HAD family hydrolase YP_114517.1 2246474 D 243233 CDS YP_114518.1 53803875 3104149 complement(2247145..2247375) 1 NC_002977.6 identified by similarity to GP:17427822; match to protein family HMM PF01206; hypothetical protein 2247375 3104149 MCA2088 Methylococcus capsulatus str. Bath hypothetical protein YP_114518.1 2247145 R 243233 CDS YP_114519.1 53803867 3103677 2247424..2248848 1 NC_002977.6 identified by similarity to SP:P11098; match to protein family HMM PF00590; match to protein family HMM TIGR01469; match to protein family HMM TIGR01470; precorrin-2 oxidase; siroheme synthase; ferrochelatase 2248848 cysG 3103677 cysG Methylococcus capsulatus str. Bath ferrochelatase YP_114519.1 2247424 D 243233 CDS YP_114520.1 53803866 3102424 complement(2248861..2249082) 1 NC_002977.6 identified by similarity to GP:17429853; match to protein family HMM PF03884; hypothetical protein 2249082 3102424 MCA2090 Methylococcus capsulatus str. Bath hypothetical protein YP_114520.1 2248861 R 243233 CDS YP_114521.1 53803865 3102423 complement(2249090..2249857) 1 NC_002977.6 identified by similarity to SP:P36680; match to protein family HMM PF07072; hypothetical protein 2249857 3102423 MCA2091 Methylococcus capsulatus str. Bath hypothetical protein YP_114521.1 2249090 R 243233 CDS YP_114522.1 53803864 3104006 complement(2249835..2249942) 1 NC_002977.6 hypothetical protein 2249942 3104006 MCA2092 Methylococcus capsulatus str. Bath hypothetical protein YP_114522.1 2249835 R 243233 CDS YP_114523.1 53803863 3104005 complement(2249959..2250555) 1 NC_002977.6 identified by similarity to SP:P36679; match to protein family HMM PF01121; match to protein family HMM TIGR00152; dephospho-CoA kinase 2250555 coaE 3104005 coaE Methylococcus capsulatus str. Bath dephospho-CoA kinase YP_114523.1 2249959 R 243233 CDS YP_114524.1 53803862 3104286 complement(2250563..2251432) 1 NC_002977.6 identified by similarity to SP:P22610; match to protein family HMM PF01478; match to protein family HMM PF06750; leader peptidase PilD 2251432 pilD 3104286 pilD Methylococcus capsulatus str. Bath leader peptidase PilD YP_114524.1 2250563 R 243233 CDS YP_114525.1 53803861 3104285 complement(2251456..2252670) 1 NC_002977.6 identified by similarity to GP:151066; match to protein family HMM PF00482; type IV pilin biogenesis protein PilC 2252670 pilC 3104285 pilC Methylococcus capsulatus str. Bath type IV pilin biogenesis protein PilC YP_114525.1 2251456 R 243233 CDS YP_114526.1 53803852 3103658 complement(2252675..2254390) 1 NC_002977.6 identified by similarity to SP:P22608; match to protein family HMM PF00437; match to protein family HMM PF05157; type IV pilus assembly protein PilB 2254390 pilB 3103658 pilB Methylococcus capsulatus str. Bath type IV pilus assembly protein PilB YP_114526.1 2252675 R 243233 CDS YP_114527.1 53803851 3103657 complement(2254440..2257205) 1 NC_002977.6 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 2257205 valS 3103657 valS Methylococcus capsulatus str. Bath valyl-tRNA synthetase YP_114527.1 2254440 R 243233 CDS YP_114528.1 53803850 3104101 complement(2257273..2257731) 1 NC_002977.6 identified by similarity to SP:P28905; match to protein family HMM PF04364; DNA polymerase III subunit chi 2257731 3104101 MCA2098 Methylococcus capsulatus str. Bath DNA polymerase III subunit chi YP_114528.1 2257273 R 243233 CDS YP_114529.1 53803849 3104100 complement(2257728..2259221) 1 NC_002977.6 identified by similarity to SP:P11648; match to protein family HMM PF00883; match to protein family HMM PF02789; aminopeptidase 2259221 pepA 3104100 pepA Methylococcus capsulatus str. Bath aminopeptidase YP_114529.1 2257728 R 243233 CDS YP_114530.1 53803848 3102803 2259421..2260440 1 NC_002977.6 identified by similarity to OMNI:NTL03PA03828; match to protein family HMM PF03739; hypothetical protein 2260440 3102803 MCA2100 Methylococcus capsulatus str. Bath hypothetical protein YP_114530.1 2259421 D 243233 CDS YP_114531.1 53803847 3102802 2260437..2261507 1 NC_002977.6 identified by similarity to SP:P39341; match to protein family HMM PF03739; hypothetical protein 2261507 3102802 MCA2101 Methylococcus capsulatus str. Bath hypothetical protein YP_114531.1 2260437 D 243233 CDS YP_114532.1 53803846 3104607 complement(2261513..2261956) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA03826; match to protein family HMM PF06271; hypothetical protein 2261956 3104607 MCA2102 Methylococcus capsulatus str. Bath hypothetical protein YP_114532.1 2261513 R 243233 CDS YP_114533.1 53803845 3104606 complement(2261976..2262245) 1 NC_002977.6 hypothetical protein 2262245 3104606 MCA2103 Methylococcus capsulatus str. Bath hypothetical protein YP_114533.1 2261976 R 243233 CDS YP_114534.1 53803836 3102385 2263027..2267397 1 NC_002977.6 identified by similarity to GP:9715733; match to protein family HMM PF00132; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733; nonribosomal peptide synthetase 2267397 3102385 MCA2107 Methylococcus capsulatus str. Bath nonribosomal peptide synthetase YP_114534.1 2263027 D 243233 CDS YP_114535.1 53803835 3102384 2267423..2268217 1 NC_002977.6 hypothetical protein 2268217 3102384 MCA2108 Methylococcus capsulatus str. Bath hypothetical protein YP_114535.1 2267423 D 243233 CDS YP_114536.1 53803834 3103608 2269135..2270448 1 NC_002977.6 identified by match to protein family HMM PF02321; outer membrane efflux protein 2270448 3103608 MCA2110 Methylococcus capsulatus str. Bath outer membrane efflux protein YP_114536.1 2269135 D 243233 CDS YP_114537.1 53803833 3103607 complement(2270530..2270919) 1 NC_002977.6 hypothetical protein 2270919 3103607 MCA2111 Methylococcus capsulatus str. Bath hypothetical protein YP_114537.1 2270530 R 243233 CDS YP_114538.1 53803832 3102923 complement(2270960..2272273) 1 NC_002977.6 identified by similarity to GP:4378852; hypothetical protein 2272273 3102923 MCA2112 Methylococcus capsulatus str. Bath hypothetical protein YP_114538.1 2270960 R 243233 CDS YP_114539.1 53803831 3102922 2272710..2273135 1 NC_002977.6 hypothetical protein 2273135 3102922 MCA2113 Methylococcus capsulatus str. Bath hypothetical protein YP_114539.1 2272710 D 243233 CDS YP_114540.1 53803830 3104890 complement(2273116..2274237) 1 NC_002977.6 membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; murein hydrolase B 2274237 mltB 3104890 mltB Methylococcus capsulatus str. Bath murein hydrolase B YP_114540.1 2273116 R 243233 CDS YP_114541.1 53803829 3104889 2274310..2275515 1 NC_002977.6 identified by match to protein family HMM PF01464; transglycosylase 2275515 3104889 MCA2115 Methylococcus capsulatus str. Bath transglycosylase YP_114541.1 2274310 D 243233 CDS YP_114542.1 53803820 3103512 complement(2275520..2276287) 1 NC_002977.6 identified by match to protein family HMM PF01816; hypothetical protein 2276287 3103512 MCA2116 Methylococcus capsulatus str. Bath hypothetical protein YP_114542.1 2275520 R 243233 CDS YP_114543.1 53803819 3103511 complement(2276280..2277044) 1 NC_002977.6 identified by match to protein family HMM PF00023; match to protein family HMM PF00581; rhodanese-like domain/ankyrin repeat-containing protein 2277044 3103511 MCA2117 Methylococcus capsulatus str. Bath rhodanese-like domain/ankyrin repeat-containing protein YP_114543.1 2276280 R 243233 CDS YP_114544.1 53803818 3102501 2277230..2278453 1 NC_002977.6 identified by similarity to OMNI:NTL01SS00882; match to protein family HMM PF03065; hypothetical protein 2278453 3102501 MCA2118 Methylococcus capsulatus str. Bath hypothetical protein YP_114544.1 2277230 D 243233 CDS YP_114545.1 53803817 3102500 2278544..2280004 1 NC_002977.6 identified by similarity to OMNI:NTL01SS00882; hypothetical protein 2280004 3102500 MCA2119 Methylococcus capsulatus str. Bath hypothetical protein YP_114545.1 2278544 D 243233 CDS YP_114546.1 53803816 3102509 2280150..2280887 1 NC_002977.6 identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp/FNR family transcriptional regulator 2280887 3102509 MCA2120 Methylococcus capsulatus str. Bath Crp/FNR family transcriptional regulator YP_114546.1 2280150 D 243233 CDS YP_114547.1 53803815 3102508 complement(2280877..2281641) 1 NC_002977.6 identified by match to protein family HMM PF01061; ABC transporter permease 2281641 3102508 MCA2121 Methylococcus capsulatus str. Bath ABC transporter permease YP_114547.1 2280877 R 243233 CDS YP_114548.1 53803814 3104519 complement(2281649..2282575) 1 NC_002977.6 identified by similarity to SP:P36879; match to protein family HMM PF00005; ABC transporter ATP-binding protein 2282575 3104519 MCA2122 Methylococcus capsulatus str. Bath ABC transporter ATP-binding protein YP_114548.1 2281649 R 243233 CDS YP_114549.1 53803813 3104518 2282760..2284193 1 NC_002977.6 identified by match to protein family HMM PF02541; Ppx/GppA phosphatase 2284193 3104518 MCA2123 Methylococcus capsulatus str. Bath Ppx/GppA phosphatase YP_114549.1 2282760 D 243233 CDS YP_114550.1 53803804 3104717 complement(2284446..2285621) 1 NC_002977.6 identified by similarity to SP:P71243; match to protein family HMM PF00534; colanic acid biosynthesis glycosyl transferase 2285621 3104717 MCA2124 Methylococcus capsulatus str. Bath colanic acid biosynthesis glycosyl transferase YP_114550.1 2284446 R 243233 CDS YP_114551.1 53803803 3104716 complement(2285647..2286828) 1 NC_002977.6 identified by match to protein family HMM PF01041; aminotransferase 2286828 3104716 MCA2125 Methylococcus capsulatus str. Bath aminotransferase YP_114551.1 2285647 R 243233 CDS YP_114552.1 53803802 3103459 2287047..2288147 1 NC_002977.6 identified by match to protein family HMM PF00534; glycosyl transferase family protein 2288147 3103459 MCA2126 Methylococcus capsulatus str. Bath glycosyl transferase family protein YP_114552.1 2287047 D 243233 CDS YP_114553.1 53803801 3103458 complement(2288140..2289957) 1 NC_002977.6 identified by similarity to SP:P54420; match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; asparagine synthetase 2289957 3103458 MCA2127 Methylococcus capsulatus str. Bath asparagine synthetase YP_114553.1 2288140 R 243233 CDS YP_114554.1 53803800 3104144 complement(2290054..2290839) 1 NC_002977.6 hypothetical protein 2290839 3104144 MCA2128 Methylococcus capsulatus str. Bath hypothetical protein YP_114554.1 2290054 R 243233 CDS YP_114555.1 53803799 3104143 complement(2290985..2292709) 1 NC_002977.6 identified by similarity to GP:4580028; multicopper oxidase 2292709 3104143 MCA2129 Methylococcus capsulatus str. Bath multicopper oxidase YP_114555.1 2290985 R 243233 CDS YP_114556.1 53803798 3103516 complement(2292803..2293393) 1 NC_002977.6 identified by similarity to GP:3282847; hypothetical protein 2293393 3103516 MCA2130 Methylococcus capsulatus str. Bath hypothetical protein YP_114556.1 2292803 R 243233 CDS YP_114557.1 53803797 3103515 complement(2293572..2296646) 1 NC_002977.6 AcrB/AcrD/AcrF family protein 2296646 3103515 MCA2131 Methylococcus capsulatus str. Bath AcrB/AcrD/AcrF family protein YP_114557.1 2293572 R 243233 CDS YP_114558.1 53803788 3103474 complement(2296643..2297725) 1 NC_002977.6 identified by similarity to OMNI:VC0913; match to protein family HMM PF00529; match to protein family HMM TIGR01730; HlyD family secretion protein 2297725 3103474 MCA2132 Methylococcus capsulatus str. Bath HlyD family secretion protein YP_114558.1 2296643 R 243233 CDS YP_114559.1 53803787 3103473 complement(2297773..2298036) 1 NC_002977.6 identified by similarity to SP:P37687; match to protein family HMM PF00462; match to protein family HMM TIGR02181; glutaredoxin family protein 2298036 3103473 MCA2133 Methylococcus capsulatus str. Bath glutaredoxin family protein YP_114559.1 2297773 R 243233 CDS YP_114560.1 53803786 3103221 2298409..2298828 1 NC_002977.6 identified by similarity to SP:P33636; match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 2298828 trxA-2 3103221 trxA-2 Methylococcus capsulatus str. Bath thioredoxin YP_114560.1 2298409 D 243233 CDS YP_114561.1 53803785 3103220 2299074..2299181 1 NC_002977.6 hypothetical protein 2299181 3103220 MCA2135 Methylococcus capsulatus str. Bath hypothetical protein YP_114561.1 2299074 D 243233 CDS YP_114562.1 53803784 3104888 complement(2299172..2300614) 1 NC_002977.6 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter 2300614 amt-3 3104888 amt-3 Methylococcus capsulatus str. Bath ammonium transporter YP_114562.1 2299172 R 243233 CDS YP_114563.1 53803783 3104887 complement(2300645..2300983) 1 NC_002977.6 identified by similarity to SP:P38504; match to protein family HMM PF00543; nitrogen regulatory protein P-II 2300983 3104887 MCA2137 Methylococcus capsulatus str. Bath nitrogen regulatory protein P-II YP_114563.1 2300645 R 243233 CDS YP_114564.1 53803614 3103328 2301244..2301495 1 NC_002977.6 identified by similarity to SP:Q46868; match to protein family HMM PF04380; hypothetical protein 2301495 3103328 MCA2138 Methylococcus capsulatus str. Bath hypothetical protein YP_114564.1 2301244 D 243233 CDS YP_114565.1 53803605 3105002 2301564..2303021 1 NC_002977.6 identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368; Mg chelatase-like protein 2303021 3105002 MCA2139 Methylococcus capsulatus str. Bath Mg chelatase-like protein YP_114565.1 2301564 D 243233 CDS YP_114566.1 53803604 3105001 2303018..2305021 1 NC_002977.6 identified by similarity to SP:P09980; match to protein family HMM PF00580; match to protein family HMM TIGR01074; ATP-dependent DNA helicase Rep 2305021 rep 3105001 rep Methylococcus capsulatus str. Bath ATP-dependent DNA helicase Rep YP_114566.1 2303018 D 243233 CDS YP_114567.1 53803603 3102856 2305225..2305380 1 NC_002977.6 hypothetical protein 2305380 3102856 MCA2141 Methylococcus capsulatus str. Bath hypothetical protein YP_114567.1 2305225 D 243233 CDS YP_114568.1 53803602 3104579 complement(2306347..2306856) 1 NC_002977.6 lipoprotein 2306856 3104579 MCA2144 Methylococcus capsulatus str. Bath lipoprotein YP_114568.1 2306347 R 243233 CDS YP_114569.1 53803601 3104578 complement(2306846..2307610) 1 NC_002977.6 identified by similarity to OMNI:NTL01PM1828; hypothetical protein 2307610 3104578 MCA2145 Methylococcus capsulatus str. Bath hypothetical protein YP_114569.1 2306846 R 243233 CDS YP_114570.1 53803600 3103084 complement(2307607..2309169) 1 NC_002977.6 identified by similarity to OMNI:NTL01PM1827; match to protein family HMM PF03781; hypothetical protein 2309169 3103084 MCA2146 Methylococcus capsulatus str. Bath hypothetical protein YP_114570.1 2307607 R 243233 CDS YP_114571.1 53803599 3103083 2309164..2310600 1 NC_002977.6 identified by match to protein family HMM PF00854; proton-dependent oligopeptide transporter family protein 2310600 3103083 MCA2147 Methylococcus capsulatus str. Bath proton-dependent oligopeptide transporter family protein YP_114571.1 2309164 D 243233 CDS YP_114572.1 53803590 3103485 complement(2310608..2312338) 1 NC_002977.6 identified by similarity to SP:P18956; match to protein family HMM PF01019; match to protein family HMM TIGR00066; gamma-glutamyltranspeptidase 2312338 ggt 3103485 ggt Methylococcus capsulatus str. Bath gamma-glutamyltranspeptidase YP_114572.1 2310608 R 243233 CDS YP_114573.1 53803589 3103484 complement(2312401..2313957) 1 NC_002977.6 hypothetical protein 2313957 3103484 MCA2149 Methylococcus capsulatus str. Bath hypothetical protein YP_114573.1 2312401 R 243233 CDS YP_114574.1 53803588 3102271 complement(2314077..2315351) 1 NC_002977.6 hypothetical protein 2315351 3102271 MCA2150 Methylococcus capsulatus str. Bath hypothetical protein YP_114574.1 2314077 R 243233 CDS YP_114575.1 53803587 3102270 complement(2315597..2316274) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA01960; match to protein family HMM PF00313; match to protein family HMM PF06961; cold-shock domain-contain protein 2316274 3102270 MCA2151 Methylococcus capsulatus str. Bath cold-shock domain-contain protein YP_114575.1 2315597 R 243233 CDS YP_114576.1 53803586 3103728 complement(2316331..2319561) 1 NC_002977.6 identified by similarity to OMNI:VCA0638; AcrB/AcrD/AcrF family protein 2319561 3103728 MCA2152 Methylococcus capsulatus str. Bath AcrB/AcrD/AcrF family protein YP_114576.1 2316331 R 243233 CDS YP_114577.1 53803585 3103727 complement(2319580..2320659) 1 NC_002977.6 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; HlyD family secretion protein 2320659 3103727 MCA2153 Methylococcus capsulatus str. Bath HlyD family secretion protein YP_114577.1 2319580 R 243233 CDS YP_114578.1 53803584 3104566 complement(2320683..2322044) 1 NC_002977.6 identified by similarity to SP:P11092; match to protein family HMM PF02321; outer membrane protein CyaE 2322044 3104566 MCA2154 Methylococcus capsulatus str. Bath outer membrane protein CyaE YP_114578.1 2320683 R 243233 CDS YP_114579.1 53803583 3104565 2322290..2323564 1 NC_002977.6 identified by similarity to GP:2385380; sulfide-quinone reductase 2323564 sqr 3104565 sqr Methylococcus capsulatus str. Bath sulfide-quinone reductase YP_114579.1 2322290 D 243233 CDS YP_114580.1 53803575 3104158 2323620..2324138 1 NC_002977.6 identified by similarity to SP:P30746; match to protein family HMM PF00994; match to protein family HMM TIGR00177; molybdenum cofactor biosynthesis protein B 2324138 moaB 3104158 moaB Methylococcus capsulatus str. Bath molybdenum cofactor biosynthesis protein B YP_114580.1 2323620 D 243233 CDS YP_114581.1 53803574 3103490 2324309..2325601 1 NC_002977.6 identified by similarity to GP:17428575; match to protein family HMM PF03631; match to protein family HMM TIGR00765; ribonuclease BN 2325601 3103490 MCA2157 Methylococcus capsulatus str. Bath ribonuclease BN YP_114581.1 2324309 D 243233 CDS YP_114582.1 53803573 3103489 complement(2325627..2326511) 1 NC_002977.6 identified by match to protein family HMM PF00165; match to protein family HMM PF06445; AraC family transcriptional regulator 2326511 3103489 MCA2158 Methylococcus capsulatus str. Bath AraC family transcriptional regulator YP_114582.1 2325627 R 243233 CDS YP_114583.1 53803572 3102958 2326900..2330088 1 NC_002977.6 identified by similarity to GP:4325061; cytochrome c5530 family protein 2330088 3102958 MCA2160 Methylococcus capsulatus str. Bath cytochrome c5530 family protein YP_114583.1 2326900 D 243233 CDS YP_114584.1 53803571 3102957 complement(2330552..2333164) 1 NC_002977.6 hypothetical protein 2333164 3102957 MCA2161 Methylococcus capsulatus str. Bath hypothetical protein YP_114584.1 2330552 R 243233 CDS YP_114585.1 53803570 3102707 complement(2333352..2333948) 1 NC_002977.6 identified by similarity to GP:17132783; match to protein family HMM PF05685; hypothetical protein 2333948 3102707 MCA2162 Methylococcus capsulatus str. Bath hypothetical protein YP_114585.1 2333352 R 243233 CDS YP_114586.1 53803569 3102706 2334444..2334776 1 NC_002977.6 hypothetical protein 2334776 3102706 MCA2163 Methylococcus capsulatus str. Bath hypothetical protein YP_114586.1 2334444 D 243233 CDS YP_114587.1 53803568 3104948 complement(2334837..2337980) 1 NC_002977.6 identified by similarity to SP:O34623; match to protein family HMM PF01336; match to protein family HMM PF02231; match to protein family HMM TIGR00594; DNA polymerase III subunit alpha 2337980 3104948 MCA2164 Methylococcus capsulatus str. Bath DNA polymerase III subunit alpha YP_114587.1 2334837 R 243233 CDS YP_114588.1 53803559 3103635 complement(2337964..2339442) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00671; hypothetical protein 2339442 3103635 MCA2165 Methylococcus capsulatus str. Bath hypothetical protein YP_114588.1 2337964 R 243233 CDS YP_114589.1 53803558 3103972 complement(2339450..2340073) 1 NC_002977.6 identified by similarity to GP:9946550; hypothetical protein 2340073 3103972 MCA2166 Methylococcus capsulatus str. Bath hypothetical protein YP_114589.1 2339450 R 243233 CDS YP_114590.1 53803557 3103971 complement(2340073..2340681) 1 NC_002977.6 Represses a number of genes involved in the response to DNA damage; LexA repressor 2340681 lexA 3103971 lexA Methylococcus capsulatus str. Bath LexA repressor YP_114590.1 2340073 R 243233 CDS YP_114591.1 53803556 3102237 2341545..2342924 1 NC_002977.6 identified by match to protein family HMM PF02012; BNR repeat-containing protein 2342924 3102237 MCA2169 Methylococcus capsulatus str. Bath BNR repeat-containing protein YP_114591.1 2341545 D 243233 CDS YP_114592.1 53803555 3102236 2342921..2343355 1 NC_002977.6 identified by similarity to SP:P12376; match to protein family HMM PF04234; copper resistance protein 2343355 3102236 MCA2170 Methylococcus capsulatus str. Bath copper resistance protein YP_114592.1 2342921 D 243233 CDS YP_114593.1 53803554 3102482 2344223..2345749 1 NC_002977.6 hypothetical protein 2345749 3102482 MCA2171 Methylococcus capsulatus str. Bath hypothetical protein YP_114593.1 2344223 D 243233 CDS YP_114594.1 53803553 3102481 2345746..2346414 1 NC_002977.6 identified by similarity to OMNI:NTL03PA02857; match to protein family HMM PF00005; ABC transporter ATP-binding protein 2346414 3102481 MCA2172 Methylococcus capsulatus str. Bath ABC transporter ATP-binding protein YP_114594.1 2345746 D 243233 CDS YP_114595.1 53803552 3104485 2346411..2347592 1 NC_002977.6 identified by similarity to OMNI:DRB0050; hypothetical protein 2347592 3104485 MCA2173 Methylococcus capsulatus str. Bath hypothetical protein YP_114595.1 2346411 D 243233 CDS YP_114596.1 53803543 3104768 2347601..2348506 1 NC_002977.6 identified by similarity to GP:4249623; match to protein family HMM PF01297; adhesion lipoprotein 2348506 3104768 MCA2174 Methylococcus capsulatus str. Bath adhesion lipoprotein YP_114596.1 2347601 D 243233 CDS YP_114597.1 53803542 3103881 2348517..2348867 1 NC_002977.6 identified by similarity to OMNI:NTL01BH0645; hypothetical protein 2348867 3103881 MCA2175 Methylococcus capsulatus str. Bath hypothetical protein YP_114597.1 2348517 D 243233 CDS YP_114598.1 53803540 3104828 complement(2349056..2349442) 1 NC_002977.6 hypothetical protein 2349442 3104828 MCA2176 Methylococcus capsulatus str. Bath hypothetical protein YP_114598.1 2349056 R 243233 CDS YP_114599.1 53803541 3103880 2349537..2349917 1 NC_002977.6 hypothetical protein 2349917 3103880 MCA2177 Methylococcus capsulatus str. Bath hypothetical protein YP_114599.1 2349537 D 243233 CDS YP_114600.1 53803539 3104827 2350003..2351103 1 NC_002977.6 identified by match to protein family HMM PF01609; ISMca1, transposase 2351103 3104827 MCA2178 Methylococcus capsulatus str. Bath ISMca1, transposase YP_114600.1 2350003 D 243233 CDS YP_114601.1 53803538 3102572 2351309..2351521 1 NC_002977.6 lipoprotein 2351521 3102572 MCA2179 Methylococcus capsulatus str. Bath lipoprotein YP_114601.1 2351309 D 243233 CDS YP_114602.1 53803537 3102571 2351673..2353970 1 NC_002977.6 identified by match to protein family HMM PF00593; TonB-dependent receptor 2353970 3102571 MCA2180 Methylococcus capsulatus str. Bath TonB-dependent receptor YP_114602.1 2351673 D 243233 CDS YP_114603.1 53803536 3102739 complement(2354278..2355090) 1 NC_002977.6 identified by match to protein family HMM PF00034; cytochrome c family protein 2355090 3102739 MCA2181 Methylococcus capsulatus str. Bath cytochrome c family protein YP_114603.1 2354278 R 243233 CDS YP_114604.1 53803535 3102738 complement(2355163..2355750) 1 NC_002977.6 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; decarboxylase 2355750 3102738 MCA2182 Methylococcus capsulatus str. Bath decarboxylase YP_114604.1 2355163 R 243233 CDS YP_114605.1 53803534 3103381 2355852..2356271 1 NC_002977.6 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein 2356271 3103381 MCA2183 Methylococcus capsulatus str. Bath hypothetical protein YP_114605.1 2355852 D 243233 CDS YP_114606.1 53803533 3103380 complement(2356275..2356889) 1 NC_002977.6 identified by similarity to SP:P37194; match to protein family HMM PF03843; Slp family outer membrane lipoprotein 2356889 3103380 MCA2184 Methylococcus capsulatus str. Bath Slp family outer membrane lipoprotein YP_114606.1 2356275 R 243233 CDS YP_114607.1 53803532 3104776 complement(2356939..2357325) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA05329; lipoprotein 2357325 3104776 MCA2185 Methylococcus capsulatus str. Bath lipoprotein YP_114607.1 2356939 R 243233 CDS YP_114608.1 53803531 3104775 2357411..2358256 1 NC_002977.6 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase 2358256 3104775 MCA2186 Methylococcus capsulatus str. Bath short chain dehydrogenase/reductase oxidoreductase YP_114608.1 2357411 D 243233 CDS YP_114609.1 53803530 3102589 complement(2358721..2360790) 1 NC_002977.6 identified by match to protein family HMM PF00245; alkaline phosphatase 2360790 3102589 MCA2187 Methylococcus capsulatus str. Bath alkaline phosphatase YP_114609.1 2358721 R 243233 CDS YP_114610.1 53803529 3102588 complement(2360898..2361518) 1 NC_002977.6 hypothetical protein 2361518 3102588 MCA2188 Methylococcus capsulatus str. Bath hypothetical protein YP_114610.1 2360898 R 243233 CDS YP_114611.1 53803528 3102295 2361459..2363261 1 NC_002977.6 cytochrome c family protein 2363261 3102295 MCA2189 Methylococcus capsulatus str. Bath cytochrome c family protein YP_114611.1 2361459 D 243233 CDS YP_114612.1 53803527 3102294 2364364..2366460 1 NC_002977.6 hypothetical protein 2366460 3102294 MCA2191 Methylococcus capsulatus str. Bath hypothetical protein YP_114612.1 2364364 D 243233 CDS YP_114613.1 53803518 3102208 2366512..2367855 1 NC_002977.6 identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase 2367855 3102208 MCA2192 Methylococcus capsulatus str. Bath dolichyl-phosphate-mannose-protein mannosyltransferase YP_114613.1 2366512 D 243233 CDS YP_114614.1 53803517 3102207 complement(2367865..2368827) 1 NC_002977.6 identified by match to protein family HMM PF00535; glycosyl transferase family protein 2368827 3102207 MCA2193 Methylococcus capsulatus str. Bath glycosyl transferase family protein YP_114614.1 2367865 R 243233 CDS YP_114615.1 53803516 3103472 complement(2368850..2369254) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04821; match to protein family HMM PF04138; hypothetical protein 2369254 3103472 MCA2194 Methylococcus capsulatus str. Bath hypothetical protein YP_114615.1 2368850 R 243233 CDS YP_114616.1 53803515 3103471 complement(2369428..2370678) 1 NC_002977.6 hypothetical protein 2370678 3103471 MCA2196 Methylococcus capsulatus str. Bath hypothetical protein YP_114616.1 2369428 R 243233 CDS YP_114617.1 53803514 3102486 complement(2370984..2372135) 1 NC_002977.6 identified by similarity to GP:19916330; hypothetical protein 2372135 3102486 MCA2197 Methylococcus capsulatus str. Bath hypothetical protein YP_114617.1 2370984 R 243233 CDS YP_114618.1 53803513 3102485 complement(2372360..2373649) 1 NC_002977.6 hypothetical protein 2373649 3102485 MCA2198 Methylococcus capsulatus str. Bath hypothetical protein YP_114618.1 2372360 R 243233 CDS YP_114619.1 53803512 3102134 complement(2374115..2375443) 1 NC_002977.6 identified by match to protein family HMM PF00023; ankyrin repeat-containing protein 2375443 3102134 MCA2199 Methylococcus capsulatus str. Bath ankyrin repeat-containing protein YP_114619.1 2374115 R 243233 CDS YP_114620.1 53803511 3102133 complement(2375875..2376594) 1 NC_002977.6 identified by similarity to GP:7159038; match to protein family HMM PF01292; cytochrome c' family protein 2376594 3102133 MCA2200 Methylococcus capsulatus str. Bath cytochrome c' family protein YP_114620.1 2375875 R 243233 CDS YP_114621.1 53803510 3103248 complement(2376669..2378663) 1 NC_002977.6 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2378663 uvrB 3103248 uvrB Methylococcus capsulatus str. Bath excinuclease ABC subunit B YP_114621.1 2376669 R 243233 CDS YP_114622.1 53803503 3105073 2378928..2380109 1 NC_002977.6 identified by similarity to SP:P23034; match to protein family HMM PF00155; aspartate aminotransferase 2380109 3105073 MCA2202 Methylococcus capsulatus str. Bath aspartate aminotransferase YP_114622.1 2378928 D 243233 CDS YP_114623.1 53803502 3103235 complement(2380159..2381037) 1 NC_002977.6 identified by similarity to OMNI:NMB0638; match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase 2381037 galU 3103235 galU Methylococcus capsulatus str. Bath UTP-glucose-1-phosphate uridylyltransferase YP_114623.1 2380159 R 243233 CDS YP_114624.1 53803501 3103234 complement(2381044..2381655) 1 NC_002977.6 identified by similarity to SP:P23846; match to protein family HMM PF01583; match to protein family HMM TIGR00455; adenylylsulfate kinase 2381655 cysC 3103234 cysC Methylococcus capsulatus str. Bath adenylylsulfate kinase YP_114624.1 2381044 R 243233 CDS YP_114625.1 53803500 3104279 complement(2381731..2382426) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA03179; match to protein family HMM PF00849; match to protein family HMM TIGR00093; RNA pseudouridine synthase 2382426 3104279 MCA2205 Methylococcus capsulatus str. Bath RNA pseudouridine synthase YP_114625.1 2381731 R 243233 CDS YP_114626.1 53803499 3104278 complement(2382587..2383192) 1 NC_002977.6 identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281; segregation and condensation protein B 2383192 scpB 3104278 scpB Methylococcus capsulatus str. Bath segregation and condensation protein B YP_114626.1 2382587 R 243233 CDS YP_114627.1 53803498 3103715 complement(2383194..2384009) 1 NC_002977.6 identified by similarity to SP:P35154; match to protein family HMM PF02616; segregation and condensation protein A 2384009 scpA 3103715 scpA Methylococcus capsulatus str. Bath segregation and condensation protein A YP_114627.1 2383194 R 243233 CDS YP_114628.1 53803497 3103714 complement(2384006..2384623) 1 NC_002977.6 identified by match to protein family HMM PF02163; hypothetical protein 2384623 3103714 MCA2208 Methylococcus capsulatus str. Bath hypothetical protein YP_114628.1 2384006 R 243233 CDS YP_114629.1 53803488 3102131 complement(2384709..2385332) 1 NC_002977.6 identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein 2385332 3102131 MCA2209 Methylococcus capsulatus str. Bath Sua5/YciO/YrdC/YwlC family protein YP_114629.1 2384709 R 243233 CDS YP_114630.1 53803487 3102130 complement(2385383..2385949) 1 NC_002977.6 identified by similarity to GP:15980083; match to protein family HMM PF00814; hypothetical protein 2385949 3102130 MCA2210 Methylococcus capsulatus str. Bath hypothetical protein YP_114630.1 2385383 R 243233 CDS YP_114631.1 53803486 3102817 2386201..2386947 1 NC_002977.6 identified by match to protein family HMM PF00899; match to protein family HMM PF05237; HesA/MoeB/ThiF family protein 2386947 3102817 MCA2211 Methylococcus capsulatus str. Bath HesA/MoeB/ThiF family protein YP_114631.1 2386201 D 243233 CDS YP_114632.1 53803485 3102816 2387051..2388028 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00070; match to protein family HMM PF04055; hypothetical protein 2388028 3102816 MCA2212 Methylococcus capsulatus str. Bath hypothetical protein YP_114632.1 2387051 D 243233 CDS YP_114633.1 53803484 3102548 complement(2388047..2388742) 1 NC_002977.6 identified by similarity to SP:P21866; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA binding response regulator KdpE 2388742 kdpE 3102548 kdpE Methylococcus capsulatus str. Bath DNA binding response regulator KdpE YP_114633.1 2388047 R 243233 CDS YP_114634.1 53803483 3102547 complement(2388746..2391478) 1 NC_002977.6 identified by similarity to SP:P21865; match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702; sensor histidine kinase KdpD 2391478 kdpD 3102547 kdpD Methylococcus capsulatus str. Bath sensor histidine kinase KdpD YP_114634.1 2388746 R 243233 CDS YP_114635.1 53803782 3104691 complement(2391675..2392247) 1 NC_002977.6 One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C 2392247 kdpC 3104691 kdpC Methylococcus capsulatus str. Bath potassium-transporting ATPase subunit C YP_114635.1 2391675 R 243233 CDS YP_114636.1 53803781 3104690 complement(2392257..2394329) 1 NC_002977.6 identified by similarity to SP:P03960; match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01497; K+-transporting ATPase subunit B 2394329 kdpB 3104690 kdpB Methylococcus capsulatus str. Bath K+-transporting ATPase subunit B YP_114636.1 2392257 R 243233 CDS YP_114637.1 53803764 3103612 complement(2394342..2396129) 1 NC_002977.6 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 2396129 kdpA 3103612 kdpA Methylococcus capsulatus str. Bath potassium-transporting ATPase subunit A YP_114637.1 2394342 R 243233 CDS YP_114638.1 53803763 3103611 complement(2396129..2396461) 1 NC_002977.6 identified by match to protein family HMM TIGR02115; K+-transporting ATPase subunit F 2396461 kdpF 3103611 kdpF Methylococcus capsulatus str. Bath K+-transporting ATPase subunit F YP_114638.1 2396129 R 243233 CDS YP_114639.1 53803762 3102111 2396781..2398454 1 NC_002977.6 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 2398454 fhs 3102111 fhs Methylococcus capsulatus str. Bath formate--tetrahydrofolate ligase YP_114639.1 2396781 D 243233 CDS YP_114640.1 53803761 3102110 complement(2398506..2399354) 1 NC_002977.6 identified by similarity to SP:P14489; match to protein family HMM PF00905; beta-lactamase 2399354 3102110 MCA2220 Methylococcus capsulatus str. Bath beta-lactamase YP_114640.1 2398506 R 243233 CDS YP_114641.1 53803760 3103096 complement(2399510..2400361) 1 NC_002977.6 identified by similarity to SP:P14924; match to protein family HMM PF01569; acid phosphatase 2400361 phoC 3103096 phoC Methylococcus capsulatus str. Bath acid phosphatase YP_114641.1 2399510 R 243233 CDS YP_114642.1 53803759 3104994 2401032..2402189 1 NC_002977.6 catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase 2402189 cfa 3104994 cfa Methylococcus capsulatus str. Bath cyclopropane-fatty-acyl-phospholipid synthase YP_114642.1 2401032 D 243233 CDS YP_114643.1 53803750 3103398 2402605..2403987 1 NC_002977.6 identified by match to protein family HMM PF00801; PKD domain-containing protein 2403987 3103398 MCA2224 Methylococcus capsulatus str. Bath PKD domain-containing protein YP_114643.1 2402605 D 243233 CDS YP_114644.1 53803749 3103397 complement(2404046..2405629) 1 NC_002977.6 hypothetical protein 2405629 3103397 MCA2225 Methylococcus capsulatus str. Bath hypothetical protein YP_114644.1 2404046 R 243233 CDS YP_114645.1 53803748 3103286 2405747..2407378 1 NC_002977.6 identified by similarity to GP:9946574; hypothetical protein 2407378 3103286 MCA2226 Methylococcus capsulatus str. Bath hypothetical protein YP_114645.1 2405747 D 243233 CDS YP_114646.1 53803747 3103285 2407392..2417441 1 NC_002977.6 identified by similarity to OMNI:NTL01RSA0540; match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01901; hemagglutinin-like protein 2417441 3103285 MCA2227 Methylococcus capsulatus str. Bath hemagglutinin-like protein YP_114646.1 2407392 D 243233 CDS YP_114647.1 53803746 3105036 complement(2417594..2417749) 1 NC_002977.6 hypothetical protein 2417749 3105036 MCA2228 Methylococcus capsulatus str. Bath hypothetical protein YP_114647.1 2417594 R 243233 CDS YP_114648.1 53803745 3105035 2418061..2418738 1 NC_002977.6 hypothetical protein 2418738 3105035 MCA2229 Methylococcus capsulatus str. Bath hypothetical protein YP_114648.1 2418061 D 243233 CDS YP_114649.1 53803744 3102334 2419226..2420314 1 NC_002977.6 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 2420314 3102334 MCA2230 Methylococcus capsulatus str. Bath RND family efflux transporter MFP subunit YP_114649.1 2419226 D 243233 CDS YP_114650.1 53803743 3102333 2420397..2423510 1 NC_002977.6 identified by match to protein family HMM PF00873; HAE1 efflux family protein 2423510 3102333 MCA2231 Methylococcus capsulatus str. Bath HAE1 efflux family protein YP_114650.1 2420397 D 243233 CDS YP_114651.1 53803742 3104225 2423503..2424930 1 NC_002977.6 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; outer membrane efflux family protein 2424930 3104225 MCA2232 Methylococcus capsulatus str. Bath outer membrane efflux family protein YP_114651.1 2423503 D 243233 CDS YP_114652.1 53803734 3104874 complement(2425624..2426346) 1 NC_002977.6 hypothetical protein 2426346 3104874 MCA2234 Methylococcus capsulatus str. Bath hypothetical protein YP_114652.1 2425624 R 243233 CDS YP_114653.1 53803733 3104873 complement(2426408..2428165) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00697; hypothetical protein 2428165 3104873 MCA2235 Methylococcus capsulatus str. Bath hypothetical protein YP_114653.1 2426408 R 243233 CDS YP_114654.1 53803732 3102711 complement(2428226..2428888) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00696; TonB-dependent receptor 2428888 3102711 MCA2236 Methylococcus capsulatus str. Bath TonB-dependent receptor YP_114654.1 2428226 R 243233 CDS YP_114655.1 53803731 3102710 complement(2428901..2429305) 1 NC_002977.6 identified by similarity to SP:P18784; match to protein family HMM PF02472; biopolymer ExbD/TolR family transporter 2429305 3102710 MCA2237 Methylococcus capsulatus str. Bath biopolymer ExbD/TolR family transporter YP_114655.1 2428901 R 243233 CDS YP_114656.1 53803730 3104852 complement(2429302..2431125) 1 NC_002977.6 identified by match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein 2431125 3104852 MCA2238 Methylococcus capsulatus str. Bath MotA/TolQ/ExbB proton channel family protein YP_114656.1 2429302 R 243233 CDS YP_114657.1 53803729 3104851 2431598..2431747 1 NC_002977.6 hypothetical protein 2431747 3104851 MCA2239 Methylococcus capsulatus str. Bath hypothetical protein YP_114657.1 2431598 D 243233 CDS YP_114658.1 53803728 3104625 complement(2431876..2432112) 1 NC_002977.6 hypothetical protein 2432112 3104625 MCA2240 Methylococcus capsulatus str. Bath hypothetical protein YP_114658.1 2431876 R 243233 CDS YP_114659.1 53803727 3104624 complement(2432232..2433233) 1 NC_002977.6 identified by match to protein family HMM PF00534; glycosyl transferase family protein 2433233 3104624 MCA2241 Methylococcus capsulatus str. Bath glycosyl transferase family protein YP_114659.1 2432232 R 243233 CDS YP_114660.1 53803719 3103085 complement(2433190..2433996) 1 NC_002977.6 identified by match to protein family HMM PF00149; calcineurin-like phosphoesterase 2433996 3103085 MCA2242 Methylococcus capsulatus str. Bath calcineurin-like phosphoesterase YP_114660.1 2433190 R 243233 CDS YP_114661.1 53803718 3102705 complement(2434326..2435255) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04657; match to protein family HMM TIGR01777; hypothetical protein 2435255 3102705 MCA2243 Methylococcus capsulatus str. Bath hypothetical protein YP_114661.1 2434326 R 243233 CDS YP_114662.1 53803717 3102704 complement(2435546..2435677) 1 NC_002977.6 hypothetical protein 2435677 3102704 MCA2244 Methylococcus capsulatus str. Bath hypothetical protein YP_114662.1 2435546 R 243233 CDS YP_114663.1 53803716 3102285 complement(2435927..2436049) 1 NC_002977.6 hypothetical protein 2436049 3102285 MCA2245 Methylococcus capsulatus str. Bath hypothetical protein YP_114663.1 2435927 R 243233 CDS YP_114664.1 53803715 3102284 2436270..2436581 1 NC_002977.6 identified by similarity to SP:P02422; match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 2436581 rplU 3102284 rplU Methylococcus capsulatus str. Bath 50S ribosomal protein L21 YP_114664.1 2436270 D 243233 CDS YP_114665.1 53803714 3102542 2436602..2436859 1 NC_002977.6 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 2436859 rpmA 3102542 rpmA Methylococcus capsulatus str. Bath 50S ribosomal protein L27 YP_114665.1 2436602 D 243233 CDS YP_114666.1 53803713 3102541 2436920..2437957 1 NC_002977.6 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 2437957 obgE 3102541 obgE Methylococcus capsulatus str. Bath GTPase ObgE YP_114666.1 2436920 D 243233 CDS YP_114667.1 53803712 3104430 2437941..2439065 1 NC_002977.6 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 2439065 proB 3104430 proB Methylococcus capsulatus str. Bath gamma-glutamyl kinase YP_114667.1 2437941 D 243233 CDS YP_114668.1 53803711 3104429 complement(2439112..2439390) 1 NC_002977.6 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 2439390 rpsT 3104429 rpsT Methylococcus capsulatus str. Bath 30S ribosomal protein S20 YP_114668.1 2439112 R 243233 CDS YP_114669.1 53803702 3105025 2439546..2441087 1 NC_002977.6 identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695; membrane protein MviN 2441087 mviN 3105025 mviN Methylococcus capsulatus str. Bath membrane protein MviN YP_114669.1 2439546 D 243233 CDS YP_114670.1 53803701 3105024 2441096..2442025 1 NC_002977.6 identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; riboflavin biosynthesis protein RibF 2442025 ribF 3105024 ribF Methylococcus capsulatus str. Bath riboflavin biosynthesis protein RibF YP_114670.1 2441096 D 243233 CDS YP_114671.1 53803700 3103165 2442054..2444873 1 NC_002977.6 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 2444873 ileS 3103165 ileS Methylococcus capsulatus str. Bath isoleucyl-tRNA synthetase YP_114671.1 2442054 D 243233 CDS YP_114672.1 53803699 3103164 2444870..2445346 1 NC_002977.6 identified by match to protein family HMM PF01252; match to protein family HMM TIGR00077; signal peptidase II 2445346 lspA 3103164 lspA Methylococcus capsulatus str. Bath signal peptidase II YP_114672.1 2444870 D 243233 CDS YP_114673.1 53803698 3104371 2445401..2445748 1 NC_002977.6 hypothetical protein 2445748 3104371 MCA2255 Methylococcus capsulatus str. Bath hypothetical protein YP_114673.1 2445401 D 243233 CDS YP_114674.1 53803697 3104370 complement(2445721..2446344) 1 NC_002977.6 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2446344 3104370 MCA2256 Methylococcus capsulatus str. Bath TetR family transcriptional regulator YP_114674.1 2445721 R 243233 CDS YP_114675.1 53803696 3103213 2446457..2447482 1 NC_002977.6 identified by match to protein family HMM PF00529; HlyD family secretion protein 2447482 3103213 MCA2257 Methylococcus capsulatus str. Bath HlyD family secretion protein YP_114675.1 2446457 D 243233 CDS YP_114676.1 53803695 3103212 2447489..2449039 1 NC_002977.6 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter 2449039 3103212 MCA2258 Methylococcus capsulatus str. Bath EmrB/QacA family drug resistance transporter YP_114676.1 2447489 D 243233 CDS YP_114677.1 53803687 3103092 2449169..2452378 1 NC_002977.6 identified by similarity to GP:4325061; cytochrome c5530 family protein 2452378 3103092 MCA2259 Methylococcus capsulatus str. Bath cytochrome c5530 family protein YP_114677.1 2449169 D 243233 CDS YP_114678.1 53803686 3102988 complement(2452560..2454848) 1 NC_002977.6 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 2454848 metE 3102988 metE Methylococcus capsulatus str. Bath 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_114678.1 2452560 R 243233 CDS YP_114679.1 53803685 3102987 2454949..2455890 1 NC_002977.6 identified by similarity to SP:P45349; match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator MetR 2455890 metR 3102987 metR Methylococcus capsulatus str. Bath transcriptional regulator MetR YP_114679.1 2454949 D 243233 CDS YP_114680.1 53803684 3102273 2456492..2457772 1 NC_002977.6 identified by similarity to GP:19881003; match to protein family HMM PF02321; outer membrane heavy metal efflux protein 2457772 3102273 MCA2262 Methylococcus capsulatus str. Bath outer membrane heavy metal efflux protein YP_114680.1 2456492 D 243233 CDS YP_114681.1 53803683 3102272 2457769..2459037 1 NC_002977.6 identified by similarity to SP:P77239; match to protein family HMM TIGR01730; heavy metal efflux pump membrane fusion protein 2459037 3102272 MCA2263 Methylococcus capsulatus str. Bath heavy metal efflux pump membrane fusion protein YP_114681.1 2457769 D 243233 CDS YP_114682.1 53803682 3104083 2459039..2462239 1 NC_002977.6 identified by match to protein family HMM TIGR00914; CzcA family heavy metal efflux protein 2462239 3104083 MCA2264 Methylococcus capsulatus str. Bath CzcA family heavy metal efflux protein YP_114682.1 2459039 D 243233 CDS YP_114683.1 53803681 3104082 complement(2462413..2462868) 1 NC_002977.6 identified by similarity to SP:P45945; match to protein family HMM PF00903; hypothetical protein 2462868 3104082 MCA2265 Methylococcus capsulatus str. Bath hypothetical protein YP_114683.1 2462413 R 243233 CDS YP_114684.1 53803672 3104915 2463196..2463432 1 NC_002977.6 hypothetical protein 2463432 3104915 MCA2266 Methylococcus capsulatus str. Bath hypothetical protein YP_114684.1 2463196 D 243233 CDS YP_114685.1 53803671 3104914 complement(2463480..2464091) 1 NC_002977.6 identified by similarity to GP:10241924; match to protein family HMM PF00881; nitroreductase 2464091 3104914 MCA2267 Methylococcus capsulatus str. Bath nitroreductase YP_114685.1 2463480 R 243233 CDS YP_114686.1 53803670 3102759 complement(2464121..2464828) 1 NC_002977.6 identified by similarity to GP:17429227; match to protein family HMM PF02678; hypothetical protein 2464828 3102759 MCA2268 Methylococcus capsulatus str. Bath hypothetical protein YP_114686.1 2464121 R 243233 CDS YP_114687.1 53803669 3102758 2464933..2465835 1 NC_002977.6 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 2465835 3102758 MCA2269 Methylococcus capsulatus str. Bath LysR family transcriptional regulator YP_114687.1 2464933 D 243233 CDS YP_114688.1 53803668 3103883 2466156..2467886 1 NC_002977.6 identified by similarity to SP:P00893; match to protein family HMM PF00205; match to protein family HMM PF02776; match to protein family HMM TIGR00118; acetolactate synthase large subunit 2467886 ilvB 3103883 ilvB Methylococcus capsulatus str. Bath acetolactate synthase large subunit YP_114688.1 2466156 D 243233 CDS YP_114689.1 53803667 3103882 2467889..2468380 1 NC_002977.6 identified by similarity to SP:P00894; match to protein family HMM PF01842; match to protein family HMM TIGR00119; acetolactate synthase small subunit 2468380 ilvN 3103882 ilvN Methylococcus capsulatus str. Bath acetolactate synthase small subunit YP_114689.1 2467889 D 243233 CDS YP_114690.1 53803666 3104528 2468442..2469458 1 NC_002977.6 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 2469458 ilvC 3104528 ilvC Methylococcus capsulatus str. Bath ketol-acid reductoisomerase YP_114690.1 2468442 D 243233 CDS YP_114691.1 53803657 3104132 2469507..2470253 1 NC_002977.6 identified by similarity to SP:Q48269; match to protein family HMM PF01066; match to protein family HMM TIGR00473; CDP-diacylglycerol--serine O-phosphatidyltransferase 2470253 pssA 3104132 pssA Methylococcus capsulatus str. Bath CDP-diacylglycerol--serine O-phosphatidyltransferase YP_114691.1 2469507 D 243233 CDS YP_114692.1 53803656 3102618 2470514..2472058 1 NC_002977.6 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 2472058 leuA 3102618 leuA Methylococcus capsulatus str. Bath 2-isopropylmalate synthase YP_114692.1 2470514 D 243233 CDS YP_114693.1 53803655 3102617 2472051..2472782 1 NC_002977.6 identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758; phage SPO1 DNA polymerase-like protein 2472782 3102617 MCA2276 Methylococcus capsulatus str. Bath phage SPO1 DNA polymerase-like protein YP_114693.1 2472051 D 243233 CDS YP_114694.1 53803654 3102239 2472820..2473323 1 NC_002977.6 identified by similarity to SP:P09453; match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase 2473323 rimI 3102239 rimI Methylococcus capsulatus str. Bath ribosomal-protein-alanine acetyltransferase YP_114694.1 2472820 D 243233 CDS YP_114695.1 53803653 3102238 complement(2473304..2474701) 1 NC_002977.6 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 2474701 3102238 MCA2278 Methylococcus capsulatus str. Bath sensor histidine kinase YP_114695.1 2473304 R 243233 CDS YP_114696.1 53803652 3103184 complement(2474688..2475404) 1 NC_002977.6 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 2475404 cpxR 3103184 cpxR Methylococcus capsulatus str. Bath DNA-binding response regulator YP_114696.1 2474688 R 243233 CDS YP_114697.1 53803651 3103183 complement(2475594..2475977) 1 NC_002977.6 hypothetical protein 2475977 3103183 MCA2280 Methylococcus capsulatus str. Bath hypothetical protein YP_114697.1 2475594 R 243233 CDS YP_114698.1 53803644 3104311 complement(2477322..2478143) 1 NC_002977.6 identified by similarity to GP:17131803; match to protein family HMM PF00310; hypothetical protein 2478143 3104311 MCA2281 Methylococcus capsulatus str. Bath hypothetical protein YP_114698.1 2477322 R 243233 CDS YP_114699.1 53803643 3102460 complement(2478287..2478901) 1 NC_002977.6 hypothetical protein 2478901 3102460 MCA2282 Methylococcus capsulatus str. Bath hypothetical protein YP_114699.1 2478287 R 243233 CDS YP_114700.1 53803642 3102459 2478932..2480344 1 NC_002977.6 identified by similarity to GP:12620739; hypothetical protein 2480344 3102459 MCA2283 Methylococcus capsulatus str. Bath hypothetical protein YP_114700.1 2478932 D 243233 CDS YP_114701.1 53803641 3104898 complement(2480363..2480929) 1 NC_002977.6 identified by similarity to SP:P36653; match to protein family HMM PF05728; hydrolase 2480929 3104898 MCA2284 Methylococcus capsulatus str. Bath hydrolase YP_114701.1 2480363 R 243233 CDS YP_114702.1 53803640 3104897 2481023..2482051 1 NC_002977.6 hypothetical protein 2482051 3104897 MCA2285 Methylococcus capsulatus str. Bath hypothetical protein YP_114702.1 2481023 D 243233 CDS YP_114703.1 53803639 3103322 complement(2482039..2482638) 1 NC_002977.6 hypothetical protein 2482638 3103322 MCA2286 Methylococcus capsulatus str. Bath hypothetical protein YP_114703.1 2482039 R 243233 CDS YP_114704.1 53803638 3103321 2482686..2483627 1 NC_002977.6 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 2483627 cobD 3103321 cobD Methylococcus capsulatus str. Bath cobalamin biosynthesis protein YP_114704.1 2482686 D 243233 CDS YP_114705.1 53803637 3104603 2483620..2484606 1 NC_002977.6 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 2484606 3104603 MCA2288 Methylococcus capsulatus str. Bath threonine-phosphate decarboxylase YP_114705.1 2483620 D 243233 CDS YP_114706.1 53803636 3104602 complement(2484616..2485281) 1 NC_002977.6 identified by similarity to GP:17431084; match to protein family HMM PF00881; nitroreductase 2485281 3104602 MCA2289 Methylococcus capsulatus str. Bath nitroreductase YP_114706.1 2484616 R 243233 CDS YP_114707.1 53803628 3104926 complement(2485278..2486567) 1 NC_002977.6 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 2486567 cobB 3104926 cobB Methylococcus capsulatus str. Bath cobyrinic acid a,c-diamide synthase YP_114707.1 2485278 R 243233 CDS YP_114708.1 53803627 3103117 complement(2486564..2487166) 1 NC_002977.6 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 2487166 cobA 3103117 cobA Methylococcus capsulatus str. Bath cob(I)yrinic acid a,c-diamide adenosyltransferase YP_114708.1 2486564 R 243233 CDS YP_114709.1 53803626 3103116 complement(2487153..2487476) 1 NC_002977.6 identified by similarity to GP:17427338; hypothetical protein 2487476 3103116 MCA2292 Methylococcus capsulatus str. Bath hypothetical protein YP_114709.1 2487153 R 243233 CDS YP_114710.1 53803625 3104763 complement(2487502..2488878) 1 NC_002977.6 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466; precorrin-3B C(17)-methyltransferase 2488878 3104763 MCA2293 Methylococcus capsulatus str. Bath precorrin-3B C(17)-methyltransferase YP_114710.1 2487502 R 243233 CDS YP_114711.1 53803624 3102306 complement(2489997..2490830) 1 NC_002977.6 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01467; precorrin-2 C(20)-methyltransferase 2490830 3102306 MCA2295 Methylococcus capsulatus str. Bath precorrin-2 C(20)-methyltransferase YP_114711.1 2489997 R 243233 CDS YP_114712.1 53803623 3104368 complement(2490911..2492194) 1 NC_002977.6 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01468; precorrin-6Y C5,15-methyltransferase 2492194 cobL 3104368 cobL Methylococcus capsulatus str. Bath precorrin-6Y C5,15-methyltransferase YP_114712.1 2490911 R 243233 CDS YP_114713.1 53803613 3104632 complement(2492228..2493373) 1 NC_002977.6 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 2493373 cbiD 3104632 cbiD Methylococcus capsulatus str. Bath cobalt-precorrin-6A synthase YP_114713.1 2492228 R 243233 CDS YP_114714.1 53803612 3104631 complement(2493381..2494040) 1 NC_002977.6 identified by similarity to SP:P21638; match to protein family HMM PF02570; precorrin-8X methylmutase 2494040 cobH 3104631 cobH Methylococcus capsulatus str. Bath precorrin-8X methylmutase YP_114714.1 2493381 R 243233 CDS YP_114715.1 53803611 3103077 complement(2494037..2494888) 1 NC_002977.6 identified by match to protein family HMM PF01903; CbiX protein 2494888 3103077 MCA2299 Methylococcus capsulatus str. Bath CbiX protein YP_114715.1 2494037 R 243233 CDS YP_114716.1 53803610 3103076 complement(2494885..2495706) 1 NC_002977.6 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465; precorrin-4 C(11)-methyltransferase 2495706 cobM 3103076 cobM Methylococcus capsulatus str. Bath precorrin-4 C(11)-methyltransferase YP_114716.1 2494885 R 243233 CDS YP_114717.1 53803609 3103558 complement(2495703..2496248) 1 NC_002977.6 hypothetical protein 2496248 3103558 MCA2301 Methylococcus capsulatus str. Bath hypothetical protein YP_114717.1 2495703 R 243233 CDS YP_114718.1 53803608 3103557 complement(2496389..2496658) 1 NC_002977.6 hypothetical protein 2496658 3103557 MCA2302 Methylococcus capsulatus str. Bath hypothetical protein YP_114718.1 2496389 R 243233 CDS YP_114719.1 53803607 3103391 2496998..2498011 1 NC_002977.6 identified by similarity to GP:609231; match to protein family HMM PF00288; hypothetical protein 2498011 3103391 MCA2303 Methylococcus capsulatus str. Bath hypothetical protein YP_114719.1 2496998 D 243233 CDS YP_114720.1 53803606 3103390 2498013..2499530 1 NC_002977.6 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 2499530 cobQ 3103390 cobQ Methylococcus capsulatus str. Bath cobyric acid synthase YP_114720.1 2498013 D 243233 CDS YP_114721.1 53803598 3104454 2499813..2501198 1 NC_002977.6 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; metallo-beta-lactamase 2501198 3104454 MCA2305 Methylococcus capsulatus str. Bath metallo-beta-lactamase YP_114721.1 2499813 D 243233 CDS YP_114722.1 53803597 3104453 complement(2501360..2502370) 1 NC_002977.6 tRNA nucleotidyltransferase/poly(A) polymerase 2502370 3104453 MCA2306 Methylococcus capsulatus str. Bath tRNA nucleotidyltransferase/poly(A) polymerase YP_114722.1 2501360 R 243233 CDS YP_114723.1 53803596 3103671 2502432..2503382 1 NC_002977.6 identified by similarity to SP:P04194; match to protein family HMM PF02329; histidine decarboxylase, pyruvoyl type 2503382 3103671 MCA2307 Methylococcus capsulatus str. Bath histidine decarboxylase, pyruvoyl type YP_114723.1 2502432 D 243233 CDS YP_114724.1 53803595 3103670 2503426..2503704 1 NC_002977.6 identified by similarity to GP:18161035; hypothetical protein 2503704 3103670 MCA2308 Methylococcus capsulatus str. Bath hypothetical protein YP_114724.1 2503426 D 243233 CDS YP_114725.1 53803594 3105072 complement(2503879..2504295) 1 NC_002977.6 hypothetical protein 2504295 3105072 MCA2309 Methylococcus capsulatus str. Bath hypothetical protein YP_114725.1 2503879 R 243233 CDS YP_114726.1 53803593 3105071 2504328..2504681 1 NC_002977.6 identified by similarity to GP:11862900; hypothetical protein 2504681 3105071 MCA2310 Methylococcus capsulatus str. Bath hypothetical protein YP_114726.1 2504328 D 243233 CDS YP_114727.1 53803592 3104772 complement(2504817..2505683) 1 NC_002977.6 identified by match to protein family HMM TIGR00740; methyltransferase 2505683 3104772 MCA2311 Methylococcus capsulatus str. Bath methyltransferase YP_114727.1 2504817 R 243233 CDS YP_114728.1 53803591 3104771 2505619..2506935 1 NC_002977.6 identified by similarity to SP:P13685; match to protein family HMM PF01743; match to protein family HMM TIGR01942; poly(A) polymerase 2506935 pcnB 3104771 pcnB Methylococcus capsulatus str. Bath poly(A) polymerase YP_114728.1 2505619 D 243233 CDS YP_114729.1 53803582 3103010 2507044..2507541 1 NC_002977.6 identified by similarity to SP:P26281; match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 2507541 folK-1 3103010 folK-1 Methylococcus capsulatus str. Bath 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_114729.1 2507044 D 243233 CDS YP_114730.1 53803581 3103009 2507534..2508343 1 NC_002977.6 identified by similarity to SP:P31057; match to protein family HMM PF02548; match to protein family HMM TIGR00222; 3-methyl-2-oxobutanoate hydroxymethyltransferase 2508343 panB 3103009 panB Methylococcus capsulatus str. Bath 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_114730.1 2507534 D 243233 CDS YP_114731.1 53803580 3102980 2508340..2509200 1 NC_002977.6 identified by similarity to SP:P31663; match to protein family HMM PF02569; match to protein family HMM TIGR00018; pantoate--beta-alanine ligase 2509200 panC 3102980 panC Methylococcus capsulatus str. Bath pantoate--beta-alanine ligase YP_114731.1 2508340 D 243233 CDS YP_114732.1 53803579 3102979 2509301..2509681 1 NC_002977.6 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 2509681 panD 3102979 panD Methylococcus capsulatus str. Bath aspartate alpha-decarboxylase YP_114732.1 2509301 D 243233 CDS YP_114733.1 53803578 3102454 complement(2509686..2510570) 1 NC_002977.6 identified by similarity to SP:P28822; match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 2510570 folP 3102454 folP Methylococcus capsulatus str. Bath dihydropteroate synthase YP_114733.1 2509686 R 243233 CDS YP_114734.1 53803577 3102453 complement(2510622..2511428) 1 NC_002977.6 identified by similarity to GP:17429239; match to protein family HMM PF02649; match to protein family HMM TIGR00294; hypothetical protein 2511428 3102453 MCA2318 Methylococcus capsulatus str. Bath hypothetical protein YP_114734.1 2510622 R 243233 CDS YP_114735.1 53803576 3104159 complement(2511486..2513204) 1 NC_002977.6 identified by similarity to GP:13559971; formylmethanofurane dehydrogenase subunit 2513204 3104159 MCA2319 Methylococcus capsulatus str. Bath formylmethanofurane dehydrogenase subunit YP_114735.1 2511486 R 243233 CDS YP_114736.1 53803567 3104947 complement(2513220..2513906) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA05535; hypothetical protein 2513906 3104947 MCA2320 Methylococcus capsulatus str. Bath hypothetical protein YP_114736.1 2513220 R 243233 CDS YP_114737.1 53803566 3104991 complement(2513922..2516051) 1 NC_002977.6 identified by similarity to OMNI:CC0214; match to protein family HMM PF00593; TonB-dependent receptor 2516051 3104991 MCA2321 Methylococcus capsulatus str. Bath TonB-dependent receptor YP_114737.1 2513922 R 243233 CDS YP_114738.1 53803565 3104990 complement(2516270..2517292) 1 NC_002977.6 transctiptional regulator 2517292 3104990 MCA2322 Methylococcus capsulatus str. Bath transctiptional regulator YP_114738.1 2516270 R 243233 CDS YP_114739.1 53803564 3104246 2517318..2517800 1 NC_002977.6 hypothetical protein 2517800 3104246 MCA2323 Methylococcus capsulatus str. Bath hypothetical protein YP_114739.1 2517318 D 243233 CDS YP_114740.1 53803563 3104245 complement(2517856..2520954) 1 NC_002977.6 identified by match to protein family HMM TIGR00914; CzcA family heavy metal efflux protein 2520954 3104245 MCA2324 Methylococcus capsulatus str. Bath CzcA family heavy metal efflux protein YP_114740.1 2517856 R 243233 CDS YP_114741.1 53803562 3104804 complement(2520954..2522123) 1 NC_002977.6 identified by similarity to GP:8388788; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 2522123 3104804 MCA2325 Methylococcus capsulatus str. Bath RND family efflux transporter MFP subunit YP_114741.1 2520954 R 243233 CDS YP_114742.1 53803561 3104803 complement(2522120..2522488) 1 NC_002977.6 hypothetical protein 2522488 3104803 MCA2326 Methylococcus capsulatus str. Bath hypothetical protein YP_114742.1 2522120 R 243233 CDS YP_114743.1 53803560 3103636 complement(2522734..2523279) 1 NC_002977.6 identified by similarity to OMNI:SP0830; hypothetical protein 2523279 3103636 MCA2327 Methylococcus capsulatus str. Bath hypothetical protein YP_114743.1 2522734 R 243233 CDS YP_114744.1 53803551 3104484 2523434..2523793 1 NC_002977.6 hypothetical protein 2523793 3104484 MCA2328 Methylococcus capsulatus str. Bath hypothetical protein YP_114744.1 2523434 D 243233 CDS YP_114745.1 53803550 3103536 complement(2523781..2524788) 1 NC_002977.6 identified by match to protein family HMM PF02321; outer membrane efflux family protein 2524788 3103536 MCA2329 Methylococcus capsulatus str. Bath outer membrane efflux family protein YP_114745.1 2523781 R 243233 CDS YP_114746.1 53803482 3102420 2525010..2525696 1 NC_002977.6 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 2525696 3102420 MCA2330 Methylococcus capsulatus str. Bath DNA-binding response regulator YP_114746.1 2525010 D 243233 CDS YP_114747.1 53803481 3102419 2525693..2527093 1 NC_002977.6 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 2527093 3102419 MCA2331 Methylococcus capsulatus str. Bath sensor histidine kinase YP_114747.1 2525693 D 243233 CDS YP_114748.1 53803471 3103305 complement(2527230..2528525) 1 NC_002977.6 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00857; dihydroorotase 2528525 3103305 MCA2332 Methylococcus capsulatus str. Bath dihydroorotase YP_114748.1 2527230 R 243233 CDS YP_114749.1 53803470 3102801 complement(2528522..2529508) 1 NC_002977.6 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 2529508 pyrB 3102801 pyrB Methylococcus capsulatus str. Bath aspartate carbamoyltransferase YP_114749.1 2528522 R 243233 CDS YP_114750.1 53803469 3102800 complement(2529505..2530017) 1 NC_002977.6 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 2530017 3102800 MCA2334 Methylococcus capsulatus str. Bath bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase YP_114750.1 2529505 R 243233 CDS YP_114751.1 53803468 3102527 complement(2530021..2530476) 1 NC_002977.6 identified by similarity to GP:10442817; match to protein family HMM PF03652; match to protein family HMM TIGR00250; hypothetical protein 2530476 3102527 MCA2335 Methylococcus capsulatus str. Bath hypothetical protein YP_114751.1 2530021 R 243233 CDS YP_114752.1 53803467 3102526 complement(2530469..2531035) 1 NC_002977.6 identified by similarity to GP:17427686; match to protein family HMM PF02622; hypothetical protein 2531035 3102526 MCA2336 Methylococcus capsulatus str. Bath hypothetical protein YP_114752.1 2530469 R 243233 CDS YP_114753.1 53803466 3103446 complement(2531081..2531920) 1 NC_002977.6 identified by similarity to GP:17429800; match to protein family HMM TIGR01352; TonB-dependent receptor 2531920 3103446 MCA2337 Methylococcus capsulatus str. Bath TonB-dependent receptor YP_114753.1 2531081 R 243233 CDS YP_114754.1 53803465 3103445 complement(2531910..2532878) 1 NC_002977.6 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 2532878 gshB 3103445 gshB Methylococcus capsulatus str. Bath glutathione synthetase YP_114754.1 2531910 R 243233 CDS YP_114755.1 53803464 3104614 2532982..2533218 1 NC_002977.6 identified by similarity to SP:P02428; match to protein family HMM PF00830; match to protein family HMM TIGR00009; 50S ribosomal protein L28 2533218 rpmB 3104614 rpmB Methylococcus capsulatus str. Bath 50S ribosomal protein L28 YP_114755.1 2532982 D 243233 CDS YP_114756.1 53803455 3102053 2533236..2533391 1 NC_002977.6 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 2533391 rpmG 3102053 rpmG Methylococcus capsulatus str. Bath 50S ribosomal protein L33 YP_114756.1 2533236 D 243233 CDS YP_114757.1 53803454 3102608 2533556..2534179 1 NC_002977.6 identified by similarity to GP:1688245; match to protein family HMM PF01656; ParA family protein 2534179 3102608 MCA2341 Methylococcus capsulatus str. Bath ParA family protein YP_114757.1 2533556 D 243233 CDS YP_114758.1 53803453 3102607 2534184..2534531 1 NC_002977.6 hypothetical protein 2534531 3102607 MCA2342 Methylococcus capsulatus str. Bath hypothetical protein YP_114758.1 2534184 D 243233 CDS YP_114759.1 53803452 3105048 2534666..2536063 1 NC_002977.6 identified by similarity to SP:P09376; match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; protease Do 2536063 htrA 3105048 htrA Methylococcus capsulatus str. Bath protease Do YP_114759.1 2534666 D 243233 CDS YP_114760.1 53803451 3105047 complement(2536132..2537052) 1 NC_002977.6 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 2537052 ilvE 3105047 ilvE Methylococcus capsulatus str. Bath branched-chain amino acid aminotransferase YP_114760.1 2536132 R 243233 CDS YP_114761.1 53803450 3104746 complement(2537102..2539948) 1 NC_002977.6 identified by similarity to SP:P30870; match to protein family HMM PF03710; glutamate-ammonia-ligase adenylyltransferase 2539948 glnE 3104746 glnE Methylococcus capsulatus str. Bath glutamate-ammonia-ligase adenylyltransferase YP_114761.1 2537102 R 243233 CDS YP_114762.1 53803449 3104745 complement(2540081..2540440) 1 NC_002977.6 identified by similarity to SP:P02416; match to protein family HMM PF01196; match to protein family HMM TIGR00059; 50S ribosomal protein L17 2540440 rplQ 3104745 rplQ Methylococcus capsulatus str. Bath 50S ribosomal protein L17 YP_114762.1 2540081 R 243233 CDS YP_114763.1 53803448 3103602 complement(2540462..2541448) 1 NC_002977.6 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 2541448 rpoA 3103602 rpoA Methylococcus capsulatus str. Bath DNA-directed RNA polymerase subunit alpha YP_114763.1 2540462 R 243233 CDS YP_114764.1 53803440 3103674 complement(2541472..2542092) 1 NC_002977.6 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 2542092 rpsD 3103674 rpsD Methylococcus capsulatus str. Bath 30S ribosomal protein S4 YP_114764.1 2541472 R 243233 CDS YP_114765.1 53803439 3103673 complement(2542106..2542492) 1 NC_002977.6 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 2542492 rpsK 3103673 rpsK Methylococcus capsulatus str. Bath 30S ribosomal protein S11 YP_114765.1 2542106 R 243233 CDS YP_114766.1 53803438 3102992 complement(2542508..2542864) 1 NC_002977.6 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 2542864 rpsM 3102992 rpsM Methylococcus capsulatus str. Bath 30S ribosomal protein S13 YP_114766.1 2542508 R 243233 CDS YP_114767.1 53805182 3103438 complement(2542947..2543060) 1 NC_002977.6 identified by similarity to SP:P21194; match to protein family HMM PF00444; match to protein family HMM TIGR01022; 50S ribosomal protein L36 2543060 rpmJ 3103438 rpmJ Methylococcus capsulatus str. Bath 50S ribosomal protein L36 YP_114767.1 2542947 R 243233 CDS YP_114768.1 53803437 3102991 complement(2543088..2544413) 1 NC_002977.6 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 2544413 secY 3102991 secY Methylococcus capsulatus str. Bath preprotein translocase subunit SecY YP_114768.1 2543088 R 243233 CDS YP_114769.1 53803436 3103526 complement(2544413..2544847) 1 NC_002977.6 identified by similarity to SP:P02413; match to protein family HMM PF01305; match to protein family HMM TIGR01071; 50S ribosomal protein L15 2544847 rplO 3103526 rplO Methylococcus capsulatus str. Bath 50S ribosomal protein L15 YP_114769.1 2544413 R 243233 CDS YP_114770.1 53803435 3103525 complement(2544849..2545034) 1 NC_002977.6 identified by similarity to SP:P02430; match to protein family HMM PF00327; match to protein family HMM TIGR01308; 50S ribosomal protein L30 2545034 rpmD 3103525 rpmD Methylococcus capsulatus str. Bath 50S ribosomal protein L30 YP_114770.1 2544849 R 243233 CDS YP_114771.1 53803434 3102700 complement(2545040..2545549) 1 NC_002977.6 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 2545549 rpsE 3102700 rpsE Methylococcus capsulatus str. Bath 30S ribosomal protein S5 YP_114771.1 2545040 R 243233 CDS YP_114772.1 53803433 3102699 complement(2545562..2545915) 1 NC_002977.6 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 2545915 rplR 3102699 rplR Methylococcus capsulatus str. Bath 50S ribosomal protein L18 YP_114772.1 2545562 R 243233 CDS YP_114773.1 53803432 3102954 complement(2545926..2546459) 1 NC_002977.6 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 2546459 rplF 3102954 rplF Methylococcus capsulatus str. Bath 50S ribosomal protein L6 YP_114773.1 2545926 R 243233 CDS YP_114774.1 53803425 3104661 complement(2546481..2546876) 1 NC_002977.6 identified by similarity to SP:P02361; match to protein family HMM PF00410; 30S ribosomal protein S8 2546876 rpsH 3104661 rpsH Methylococcus capsulatus str. Bath 30S ribosomal protein S8 YP_114774.1 2546481 R 243233 CDS YP_114775.1 53803424 3104320 complement(2546908..2547213) 1 NC_002977.6 identified by similarity to SP:P02370; match to protein family HMM PF00253; 30S ribosomal protein S14 2547213 rpsN 3104320 rpsN Methylococcus capsulatus str. Bath 30S ribosomal protein S14 YP_114775.1 2546908 R 243233 CDS YP_114776.1 53803423 3104319 complement(2547227..2547766) 1 NC_002977.6 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 2547766 rplE 3104319 rplE Methylococcus capsulatus str. Bath 50S ribosomal protein L5 YP_114776.1 2547227 R 243233 CDS YP_114777.1 53803422 3104165 complement(2547781..2548098) 1 NC_002977.6 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 2548098 rplX 3104165 rplX Methylococcus capsulatus str. Bath 50S ribosomal protein L24 YP_114777.1 2547781 R 243233 CDS YP_114778.1 53803421 3104164 complement(2548126..2548494) 1 NC_002977.6 identified by similarity to SP:P02411; match to protein family HMM PF00238; match to protein family HMM TIGR01067; 50S ribosomal protein L14 2548494 rplN 3104164 rplN Methylococcus capsulatus str. Bath 50S ribosomal protein L14 YP_114778.1 2548126 R 243233 CDS YP_114779.1 53803420 3105020 complement(2548539..2548799) 1 NC_002977.6 identified by similarity to SP:P02373; match to protein family HMM PF00366; 30S ribosomal protein S17 2548799 rpsQ 3105020 rpsQ Methylococcus capsulatus str. Bath 30S ribosomal protein S17 YP_114779.1 2548539 R 243233 CDS YP_114780.1 53803419 3105019 complement(2548796..2548993) 1 NC_002977.6 identified by similarity to SP:P02429; match to protein family HMM PF00831; match to protein family HMM TIGR00012; 50S ribosomal protein L29 2548993 rpmC 3105019 rpmC Methylococcus capsulatus str. Bath 50S ribosomal protein L29 YP_114780.1 2548796 R 243233 CDS YP_114781.1 53803418 3103260 complement(2548990..2549403) 1 NC_002977.6 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 2549403 rplP 3103260 rplP Methylococcus capsulatus str. Bath 50S ribosomal protein L16 YP_114781.1 2548990 R 243233 CDS YP_114782.1 53803417 3103259 complement(2549416..2550087) 1 NC_002977.6 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 2550087 rpsC 3103259 rpsC Methylococcus capsulatus str. Bath 30S ribosomal protein S3 YP_114782.1 2549416 R 243233 CDS YP_114783.1 53803409 3102770 complement(2550111..2550443) 1 NC_002977.6 identified by similarity to SP:P02423; match to protein family HMM PF00237; match to protein family HMM TIGR01044; 50S ribosomal protein L22 2550443 rplV 3102770 rplV Methylococcus capsulatus str. Bath 50S ribosomal protein L22 YP_114783.1 2550111 R 243233 CDS YP_114784.1 53803408 3103047 complement(2550457..2550729) 1 NC_002977.6 identified by similarity to SP:P02375; match to protein family HMM PF00203; match to protein family HMM TIGR01050; 30S ribosomal protein S19 2550729 rpsS 3103047 rpsS Methylococcus capsulatus str. Bath 30S ribosomal protein S19 YP_114784.1 2550457 R 243233 CDS YP_114785.2 161579541 3103046 complement(2550749..2551576) 1 NC_002977.6 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 2551576 rplB 3103046 rplB Methylococcus capsulatus str. Bath 50S ribosomal protein L2 YP_114785.2 2550749 R 243233 CDS YP_114786.1 53803406 3102407 complement(2551611..2551904) 1 NC_002977.6 identified by similarity to SP:P02424; match to protein family HMM PF00276; 50S ribosomal protein L23 2551904 rplW 3102407 rplW Methylococcus capsulatus str. Bath 50S ribosomal protein L23 YP_114786.1 2551611 R 243233 CDS YP_114787.1 53803549 3103535 complement(2551901..2552518) 1 NC_002977.6 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 2552518 rplD 3103535 rplD Methylococcus capsulatus str. Bath 50S ribosomal protein L4 YP_114787.1 2551901 R 243233 CDS YP_114788.1 53803548 3104868 complement(2552529..2553164) 1 NC_002977.6 identified by similarity to SP:P02386; match to protein family HMM PF00297; 50S ribosomal protein L3 2553164 rplC 3104868 rplC Methylococcus capsulatus str. Bath 50S ribosomal protein L3 YP_114788.1 2552529 R 243233 CDS YP_114789.1 53803547 3104867 complement(2553202..2553513) 1 NC_002977.6 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 2553513 rpsJ 3104867 rpsJ Methylococcus capsulatus str. Bath 30S ribosomal protein S10 YP_114789.1 2553202 R 243233 CDS YP_114790.1 53803546 3102512 complement(2553518..2554708) 1 NC_002977.6 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 2554708 tuf-2 3102512 tuf-2 Methylococcus capsulatus str. Bath elongation factor Tu YP_114790.1 2553518 R 243233 CDS YP_114791.1 53803545 3102511 complement(2554750..2556846) 1 NC_002977.6 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 2556846 fusA-2 3102511 fusA-2 Methylococcus capsulatus str. Bath elongation factor G YP_114791.1 2554750 R 243233 CDS YP_114792.1 53803544 3104769 complement(2556889..2557359) 1 NC_002977.6 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 2557359 rpsG 3104769 rpsG Methylococcus capsulatus str. Bath 30S ribosomal protein S7 YP_114792.1 2556889 R 243233 CDS YP_114793.1 53803526 3102658 complement(2557378..2557752) 1 NC_002977.6 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 2557752 rpsL 3102658 rpsL Methylococcus capsulatus str. Bath 30S ribosomal protein S12 YP_114793.1 2557378 R 243233 CDS YP_114794.1 53803525 3102657 2558241..2559407 1 NC_002977.6 identified by similarity to SP:P09155; match to protein family HMM PF00570; match to protein family HMM PF01612; match to protein family HMM TIGR01388; ribonuclease D 2559407 rnd 3102657 rnd Methylococcus capsulatus str. Bath ribonuclease D YP_114794.1 2558241 D 243233 CDS YP_114795.1 53803524 3103514 2559400..2560929 1 NC_002977.6 identified by similarity to GP:9950959; hypothetical protein 2560929 3103514 MCA2379 Methylococcus capsulatus str. Bath hypothetical protein YP_114795.1 2559400 D 243233 CDS YP_114796.1 53803523 3103513 complement(2560936..2561688) 1 NC_002977.6 identified by similarity to GP:19915811; match to protein family HMM TIGR02276; hypothetical protein 2561688 3103513 MCA2380 Methylococcus capsulatus str. Bath hypothetical protein YP_114796.1 2560936 R 243233 CDS YP_114797.1 53803522 3103090 complement(2561918..2562445) 1 NC_002977.6 identified by similarity to GP:773184; MxaD gene product 2562445 3103090 MCA2381 Methylococcus capsulatus str. Bath MxaD gene product YP_114797.1 2561918 R 243233 CDS YP_114798.1 53803521 3103089 complement(2562510..2563946) 1 NC_002977.6 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2563946 sbcB 3103089 sbcB Methylococcus capsulatus str. Bath exonuclease I YP_114798.1 2562510 R 243233 CDS YP_114799.1 53803520 3102346 complement(2563963..2564142) 1 NC_002977.6 identified by similarity to OMNI:VC2288; hypothetical protein 2564142 3102346 MCA2383 Methylococcus capsulatus str. Bath hypothetical protein YP_114799.1 2563963 R 243233 CDS YP_114800.1 53803519 3102345 complement(2564261..2565484) 1 NC_002977.6 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 2565484 3102345 MCA2384 Methylococcus capsulatus str. Bath Na(+)-translocating NADH-quinone reductase subunit F YP_114800.1 2564261 R 243233 CDS YP_114801.1 53803509 3103247 complement(2565501..2566109) 1 NC_002977.6 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 2566109 3103247 MCA2385 Methylococcus capsulatus str. Bath Na(+)-translocating NADH-quinone reductase subunit E YP_114801.1 2565501 R 243233 CDS YP_114802.1 53803508 3104850 complement(2566109..2566768) 1 NC_002977.6 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 2566768 3104850 MCA2386 Methylococcus capsulatus str. Bath Na(+)-translocating NADH-quinone reductase subunit D YP_114802.1 2566109 R 243233 CDS YP_114803.1 53803507 3104849 complement(2566774..2567607) 1 NC_002977.6 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 2567607 3104849 MCA2387 Methylococcus capsulatus str. Bath Na(+)-translocating NADH-quinone reductase subunit C YP_114803.1 2566774 R 243233 CDS YP_114804.1 53803506 3102163 complement(2567687..2568889) 1 NC_002977.6 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 2568889 3102163 MCA2388 Methylococcus capsulatus str. Bath Na(+)-translocating NADH-quinone reductase subunit B YP_114804.1 2567687 R 243233 CDS YP_114805.1 53803505 3102162 complement(2568895..2570253) 1 NC_002977.6 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 2570253 3102162 MCA2389 Methylococcus capsulatus str. Bath Na(+)-translocating NADH-quinone reductase subunit A YP_114805.1 2568895 R 243233 CDS YP_114806.1 53803504 3105074 2571338..2572075 1 NC_002977.6 identified by match to protein family HMM PF01790; prolipoprotein diacylglyceryl transferase 2572075 3105074 MCA2390 Methylococcus capsulatus str. Bath prolipoprotein diacylglyceryl transferase YP_114806.1 2571338 D 243233 CDS YP_114807.1 53803496 3102869 2572072..2573439 1 NC_002977.6 identified by match to protein family HMM PF04055; MoaA/NifB/PqqE family protein 2573439 3102869 MCA2391 Methylococcus capsulatus str. Bath MoaA/NifB/PqqE family protein YP_114807.1 2572072 D 243233 CDS YP_114808.1 53803495 3102868 complement(2574428..2574853) 1 NC_002977.6 hypothetical protein 2574853 3102868 MCA2393 Methylococcus capsulatus str. Bath hypothetical protein YP_114808.1 2574428 R 243233 CDS YP_114809.1 53803494 3102874 complement(2575025..2575501) 1 NC_002977.6 identified by similarity to GP:5070630; cytochrome c' 2575501 ccp 3102874 ccp Methylococcus capsulatus str. Bath cytochrome c' YP_114809.1 2575025 R 243233 CDS YP_114810.1 53803493 3102873 complement(2575717..2576346) 1 NC_002977.6 identified by similarity to SP:P43302; match to protein family HMM PF00034; cytochrome c family protein 2576346 3102873 MCA2395 Methylococcus capsulatus str. Bath cytochrome c family protein YP_114810.1 2575717 R 243233 CDS YP_114811.1 53803492 3104555 complement(2576349..2577962) 1 NC_002977.6 identified by similarity to GP:4001615; match to protein family HMM PF00115; cytochrome c oxidase subunit I 2577962 3104555 MCA2396 Methylococcus capsulatus str. Bath cytochrome c oxidase subunit I YP_114811.1 2576349 R 243233 CDS YP_114812.1 53803491 3104554 complement(2577959..2578492) 1 NC_002977.6 identified by similarity to SP:P98052; cytochrome c oxidase subunit II 2578492 3104554 MCA2397 Methylococcus capsulatus str. Bath cytochrome c oxidase subunit II YP_114812.1 2577959 R 243233 CDS YP_114813.1 53803490 3104206 complement(2578470..2578643) 1 NC_002977.6 hypothetical protein 2578643 3104206 MCA2398 Methylococcus capsulatus str. Bath hypothetical protein YP_114813.1 2578470 R 243233 CDS YP_114814.1 53803489 3104205 complement(2578640..2578789) 1 NC_002977.6 identified by similarity to GP:2182019; cytochrome c oxidase, CbaD subunit 2578789 3104205 MCA2399 Methylococcus capsulatus str. Bath cytochrome c oxidase, CbaD subunit YP_114814.1 2578640 R 243233 CDS YP_114815.1 53803480 3102243 complement(2578847..2580292) 1 NC_002977.6 identified by similarity to SP:P98008; nitric-oxide reductase subunit B 2580292 3102243 MCA2400 Methylococcus capsulatus str. Bath nitric-oxide reductase subunit B YP_114815.1 2578847 R 243233 CDS YP_114816.1 53803479 3102242 complement(2580295..2580897) 1 NC_002977.6 identified by similarity to OMNI:NTL01ATA0505; hypothetical protein 2580897 3102242 MCA2401 Methylococcus capsulatus str. Bath hypothetical protein YP_114816.1 2580295 R 243233 CDS YP_114817.1 53803478 3104432 complement(2581281..2582630) 1 NC_002977.6 identified by match to protein family HMM PF00571; match to protein family HMM PF04982; hypothetical protein 2582630 3104432 MCA2402 Methylococcus capsulatus str. Bath hypothetical protein YP_114817.1 2581281 R 243233 CDS YP_114818.1 53803477 3104431 complement(2582627..2583913) 1 NC_002977.6 identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476; membrane-bound lytic murein transglycosylase 2583913 3104431 MCA2403 Methylococcus capsulatus str. Bath membrane-bound lytic murein transglycosylase YP_114818.1 2582627 R 243233 CDS YP_114819.1 53803476 3104142 2584116..2584433 1 NC_002977.6 identified by similarity to SP:P95339; match to protein family HMM PF00034; cytochrome c family protein 2584433 3104142 MCA2405 Methylococcus capsulatus str. Bath cytochrome c family protein YP_114819.1 2584116 D 243233 CDS YP_114820.1 53803475 3104141 complement(2584699..2585295) 1 NC_002977.6 hypothetical protein 2585295 3104141 MCA2406 Methylococcus capsulatus str. Bath hypothetical protein YP_114820.1 2584699 R 243233 CDS YP_114821.1 53803474 3104318 complement(2585344..2585730) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00380; match to protein family HMM PF04241; hypothetical protein 2585730 3104318 MCA2407 Methylococcus capsulatus str. Bath hypothetical protein YP_114821.1 2585344 R 243233 CDS YP_114822.1 53803473 3104317 2585844..2586326 1 NC_002977.6 identified by similarity to GP:4100188; hypothetical protein 2586326 3104317 MCA2408 Methylococcus capsulatus str. Bath hypothetical protein YP_114822.1 2585844 D 243233 CDS YP_114823.1 53803472 3103306 2586323..2586604 1 NC_002977.6 hypothetical protein 2586604 3103306 MCA2409 Methylococcus capsulatus str. Bath hypothetical protein YP_114823.1 2586323 D 243233 CDS YP_114824.1 53803463 3104613 2586591..2588042 1 NC_002977.6 hypothetical protein 2588042 3104613 MCA2410 Methylococcus capsulatus str. Bath hypothetical protein YP_114824.1 2586591 D 243233 CDS YP_114825.1 53803462 3102104 2588050..2588982 1 NC_002977.6 identified by similarity to SP:P41780; match to protein family HMM PF02424; thiamine biosynthesis lipoprotein ApbE 2588982 3102104 MCA2411 Methylococcus capsulatus str. Bath thiamine biosynthesis lipoprotein ApbE YP_114825.1 2588050 D 243233 CDS YP_114826.1 53803460 3103462 2589018..2589803 1 NC_002977.6 identified by match to protein family HMM PF00310; glutamine amidotransferase 2589803 3103462 MCA2412 Methylococcus capsulatus str. Bath glutamine amidotransferase YP_114826.1 2589018 D 243233 CDS YP_114827.1 53803461 3102103 2589800..2590639 1 NC_002977.6 hypothetical protein 2590639 3102103 MCA2413 Methylococcus capsulatus str. Bath hypothetical protein YP_114827.1 2589800 D 243233 CDS YP_114828.1 53803459 3103461 2590636..2591718 1 NC_002977.6 identified by match to protein family HMM PF00534; glycosyl transferase family protein 2591718 3103461 MCA2414 Methylococcus capsulatus str. Bath glycosyl transferase family protein YP_114828.1 2590636 D 243233 CDS YP_114829.1 53803458 3104122 complement(2591726..2592850) 1 NC_002977.6 identified by match to protein family HMM PF00534; glycosyl transferase family protein 2592850 3104122 MCA2415 Methylococcus capsulatus str. Bath glycosyl transferase family protein YP_114829.1 2591726 R 243233 CDS YP_114830.1 53803457 3104121 complement(2592871..2593488) 1 NC_002977.6 identified by similarity to GP:8246788; match to protein family HMM PF01169; hypothetical protein 2593488 3104121 MCA2416 Methylococcus capsulatus str. Bath hypothetical protein YP_114830.1 2592871 R 243233 CDS YP_114831.1 53803456 3102054 complement(2593541..2594380) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04468; match to protein family HMM PF02535; ZIP zinc transporter family protein 2594380 3102054 MCA2417 Methylococcus capsulatus str. Bath ZIP zinc transporter family protein YP_114831.1 2593541 R 243233 CDS YP_114832.1 53803447 3103601 2594631..2595386 1 NC_002977.6 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 2595386 surE 3103601 surE Methylococcus capsulatus str. Bath stationary phase survival protein SurE YP_114832.1 2594631 D 243233 CDS YP_114833.1 53803446 3104834 2595383..2596042 1 NC_002977.6 identified by similarity to SP:P24206; match to protein family HMM PF01135; match to protein family HMM TIGR00080; protein-L-isoaspartate O-methyltransferase 2596042 pcm-2 3104834 pcm-2 Methylococcus capsulatus str. Bath protein-L-isoaspartate O-methyltransferase YP_114833.1 2595383 D 243233 CDS YP_114834.1 53803445 3104833 2596047..2598725 1 NC_002977.6 identified by similarity to GP:14026256; match to protein family HMM PF00583; match to protein family HMM PF02629; acetyltransferase 2598725 3104833 MCA2420 Methylococcus capsulatus str. Bath acetyltransferase YP_114834.1 2596047 D 243233 CDS YP_114835.1 53803444 3102097 2598730..2599209 1 NC_002977.6 identified by similarity to GP:29540766; hypothetical protein 2599209 3102097 MCA2421 Methylococcus capsulatus str. Bath hypothetical protein YP_114835.1 2598730 D 243233 CDS YP_114836.1 53803443 3102096 complement(2599214..2600128) 1 NC_002977.6 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2600128 lpxC 3102096 lpxC Methylococcus capsulatus str. Bath UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_114836.1 2599214 R 243233 CDS YP_114837.1 53803442 3103572 complement(2600264..2601412) 1 NC_002977.6 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 2601412 ftsZ 3103572 ftsZ Methylococcus capsulatus str. Bath cell division protein FtsZ YP_114837.1 2600264 R 243233 CDS YP_114838.1 53803441 3103571 complement(2601459..2602694) 1 NC_002977.6 identified by similarity to SP:P06137; match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA 2602694 ftsA 3103571 ftsA Methylococcus capsulatus str. Bath cell division protein FtsA YP_114838.1 2601459 R 243233 CDS YP_114839.1 53803431 3102953 complement(2602827..2603648) 1 NC_002977.6 identified by similarity to SP:P06136; match to protein family HMM PF03799; cell division protein FtsQ 2603648 3102953 MCA2425 Methylococcus capsulatus str. Bath cell division protein FtsQ YP_114839.1 2602827 R 243233 CDS YP_114840.1 53803430 3102563 complement(2603618..2604547) 1 NC_002977.6 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 2604547 ddl 3102563 ddl Methylococcus capsulatus str. Bath D-alanine--D-alanine ligase YP_114840.1 2603618 R 243233 CDS YP_114841.1 53803429 3102562 complement(2604570..2605484) 1 NC_002977.6 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 2605484 murB 3102562 murB Methylococcus capsulatus str. Bath UDP-N-acetylenolpyruvoylglucosamine reductase YP_114841.1 2604570 R 243233 CDS YP_114842.1 53803428 3105034 complement(2605481..2606899) 1 NC_002977.6 identified by similarity to SP:P17952; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01082; UDP-N-acetylmuramate--L-alanine ligase 2606899 murC 3105034 murC Methylococcus capsulatus str. Bath UDP-N-acetylmuramate--L-alanine ligase YP_114842.1 2605481 R 243233 CDS YP_114843.1 53803427 3105033 complement(2606896..2607960) 1 NC_002977.6 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 2607960 murG 3105033 murG Methylococcus capsulatus str. Bath undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase YP_114843.1 2606896 R 243233 CDS YP_114844.1 53803426 3104662 complement(2607945..2609141) 1 NC_002977.6 identified by similarity to SP:P16457; match to protein family HMM PF01098; cell division protein FtsW 2609141 ftsW 3104662 ftsW Methylococcus capsulatus str. Bath cell division protein FtsW YP_114844.1 2607945 R 243233 CDS YP_114845.1 53803416 3102458 complement(2609138..2610517) 1 NC_002977.6 identified by similarity to SP:P14900; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01087; UDP-N-acetylmuramoylalanine--D-glutamate ligase 2610517 murD 3102458 murD Methylococcus capsulatus str. Bath UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_114845.1 2609138 R 243233 CDS YP_114846.1 53803415 3102457 complement(2610523..2611605) 1 NC_002977.6 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 2611605 mraY 3102457 mraY Methylococcus capsulatus str. Bath phospho-N-acetylmuramoyl-pentapeptide- transferase YP_114846.1 2610523 R 243233 CDS YP_114847.1 53803414 3104896 complement(2611656..2613095) 1 NC_002977.6 identified by similarity to GP:12007716; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01085; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 2613095 murE 3104896 murE Methylococcus capsulatus str. Bath UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_114847.1 2611656 R 243233 CDS YP_114848.1 53803413 3104895 complement(2613158..2614885) 1 NC_002977.6 identified by similarity to SP:P04286; match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 3 2614885 ftsI 3104895 ftsI Methylococcus capsulatus str. Bath penicillin-binding protein 3 YP_114848.1 2613158 R 243233 CDS YP_114849.1 53803412 3103763 complement(2614915..2615172) 1 NC_002977.6 identified by similarity to SP:P22187; match to protein family HMM PF04999; match to protein family HMM TIGR02209; cell division protein FtsL 2615172 3103763 MCA2435 Methylococcus capsulatus str. Bath cell division protein FtsL YP_114849.1 2614915 R 243233 CDS YP_114850.1 53803411 3103762 complement(2615169..2616074) 1 NC_002977.6 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 2616074 3103762 MCA2436 Methylococcus capsulatus str. Bath S-adenosyl-methyltransferase MraW YP_114850.1 2615169 R 243233 CDS YP_114851.1 53803410 3102771 complement(2616104..2616562) 1 NC_002977.6 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 2616562 mraZ 3102771 mraZ Methylococcus capsulatus str. Bath cell division protein MraZ YP_114851.1 2616104 R 243233 CDS YP_114852.1 53803401 3104066 complement(2616921..2618942) 1 NC_002977.6 identified by similarity to SP:P15042; match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575; NAD-dependent DNA ligase 2618942 ligA 3104066 ligA Methylococcus capsulatus str. Bath NAD-dependent DNA ligase YP_114852.1 2616921 R 243233 CDS YP_114853.1 53803400 3104598 complement(2618939..2619607) 1 NC_002977.6 identified by similarity to SP:P77173; match to protein family HMM PF04354; cell division protein ZipA 2619607 3104598 MCA2439 Methylococcus capsulatus str. Bath cell division protein ZipA YP_114853.1 2618939 R 243233 CDS YP_114854.1 53803399 3104597 complement(2619664..2622993) 1 NC_002977.6 identified by similarity to SP:P51834; match to protein family HMM PF02463; match to protein family HMM PF02483; match to protein family HMM PF06470; match to protein family HMM TIGR02168; chromosome segregation protein SMC 2622993 smc 3104597 smc Methylococcus capsulatus str. Bath chromosome segregation protein SMC YP_114854.1 2619664 R 243233 CDS YP_114855.1 53803398 3103314 2623315..2623704 1 NC_002977.6 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 2623704 3103314 MCA2441 Methylococcus capsulatus str. Bath 7-cyano-7-deazaguanine reductase YP_114855.1 2623315 D 243233 CDS YP_114856.1 53803397 3103313 complement(2623708..2624343) 1 NC_002977.6 identified by similarity to OMNI:NTL01BH0617; match to protein family HMM PF03473; MOSC domain-containing protein 2624343 3103313 MCA2442 Methylococcus capsulatus str. Bath MOSC domain-containing protein YP_114856.1 2623708 R 243233 CDS YP_114857.1 53803396 3104924 complement(2624340..2624921) 1 NC_002977.6 identified by similarity to SP:P10442; match to protein family HMM PF01351; ribonuclease HII 2624921 rnhB 3104924 rnhB Methylococcus capsulatus str. Bath ribonuclease HII YP_114857.1 2624340 R 243233 CDS YP_114858.1 53803395 3104923 complement(2624940..2625734) 1 NC_002977.6 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 2625734 lpxA-2 3104923 lpxA-2 Methylococcus capsulatus str. Bath UDP-N-acetylglucosamine acyltransferase YP_114858.1 2624940 R 243233 CDS YP_114859.1 53803385 3104409 complement(2625707..2626147) 1 NC_002977.6 identified by similarity to SP:P21774; match to protein family HMM PF03061; match to protein family HMM TIGR01750; (3R)-hydroxymyristoyl-ACP dehydratase 2626147 fabZ 3104409 fabZ Methylococcus capsulatus str. Bath (3R)-hydroxymyristoyl-ACP dehydratase YP_114859.1 2625707 R 243233 CDS YP_114860.1 53803384 3102140 complement(2626198..2626704) 1 NC_002977.6 identified by similarity to SP:P31519; match to protein family HMM PF03938; outer membrane protein OmpH 2626704 3102140 MCA2446 Methylococcus capsulatus str. Bath outer membrane protein OmpH YP_114860.1 2626198 R 243233 CDS YP_114861.1 53803383 3102139 complement(2626863..2629253) 1 NC_002977.6 identified by match to protein family HMM PF01103; match to protein family HMM PF07244; OMP85 family outer membrane protein 2629253 3102139 MCA2447 Methylococcus capsulatus str. Bath OMP85 family outer membrane protein YP_114861.1 2626863 R 243233 CDS YP_114862.1 53803382 3104651 complement(2629250..2629978) 1 NC_002977.6 identified by similarity to SP:P07656; match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system protein PhoU 2629978 phoU2 3104651 phoU2 Methylococcus capsulatus str. Bath phosphate transport system protein PhoU YP_114862.1 2629250 R 243233 CDS YP_114863.1 53803405 3102406 2630263..2631273 1 NC_002977.6 identified by similarity to SP:P39858; match to protein family HMM PF01370; capsular polysaccharide biosynthesis protein I 2631273 3102406 MCA2449 Methylococcus capsulatus str. Bath capsular polysaccharide biosynthesis protein I YP_114863.1 2630263 D 243233 CDS YP_114864.1 53803404 3103662 2631278..2631829 1 NC_002977.6 identified by similarity to SP:P32125; match to protein family HMM PF03205; match to protein family HMM TIGR00176; molybdopterin-guanine dinucleotide biosynthesis protein MobB 2631829 mobB 3103662 mobB Methylococcus capsulatus str. Bath molybdopterin-guanine dinucleotide biosynthesis protein MobB YP_114864.1 2631278 D 243233 CDS YP_114865.1 53803403 3103661 2631826..2632851 1 NC_002977.6 identified by similarity to SP:Q59083; match to protein family HMM PF01370; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase 2632851 galE-2 3103661 galE-2 Methylococcus capsulatus str. Bath UDP-glucose 4-epimerase YP_114865.1 2631826 D 243233 CDS YP_114866.1 53803402 3104067 complement(2632964..2633371) 1 NC_002977.6 hypothetical protein 2633371 3104067 MCA2452 Methylococcus capsulatus str. Bath hypothetical protein YP_114866.1 2632964 R 243233 CDS YP_114867.1 53803394 3103444 complement(2633407..2633976) 1 NC_002977.6 hypothetical protein 2633976 3103444 MCA2453 Methylococcus capsulatus str. Bath hypothetical protein YP_114867.1 2633407 R 243233 CDS YP_114868.1 53803393 3103443 complement(2633973..2634473) 1 NC_002977.6 identified by similarity to OMNI:NT01MC3442; match to protein family HMM PF01928; hypothetical protein 2634473 3103443 MCA2454 Methylococcus capsulatus str. Bath hypothetical protein YP_114868.1 2633973 R 243233 CDS YP_114869.1 53803392 3104055 complement(2634477..2634713) 1 NC_002977.6 hypothetical protein 2634713 3104055 MCA2455 Methylococcus capsulatus str. Bath hypothetical protein YP_114869.1 2634477 R 243233 CDS YP_114870.1 53803391 3104054 complement(2634723..2635664) 1 NC_002977.6 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 2635664 3104054 MCA2456 Methylococcus capsulatus str. Bath LysR family transcriptional regulator YP_114870.1 2634723 R 243233 CDS YP_114871.1 53803390 3104156 2635782..2636240 1 NC_002977.6 identified by similarity to OMNI:NTL01SM01709; hypothetical protein 2636240 3104156 MCA2457 Methylococcus capsulatus str. Bath hypothetical protein YP_114871.1 2635782 D 243233 CDS YP_114872.1 53803389 3104155 2636455..2637039 1 NC_002977.6 identified by similarity to SP:P09157; match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase, Fe 2637039 sodB-2 3104155 sodB-2 Methylococcus capsulatus str. Bath superoxide dismutase, Fe YP_114872.1 2636455 D 243233 CDS YP_114873.1 53803388 3104689 2637150..2637845 1 NC_002977.6 identified by similarity to GP:20800465; match to protein family HMM PF00106; csgA protein 2637845 3104689 MCA2459 Methylococcus capsulatus str. Bath csgA protein YP_114873.1 2637150 D 243233 CDS YP_114874.1 53803387 3104688 2637873..2638295 1 NC_002977.6 hypothetical protein 2638295 3104688 MCA2460 Methylococcus capsulatus str. Bath hypothetical protein YP_114874.1 2637873 D 243233 CDS YP_114875.1 53803386 3104410 complement(2638724..2639218) 1 NC_002977.6 identified by similarity to GP:16944582; hypothetical protein 2639218 3104410 MCA2461 Methylococcus capsulatus str. Bath hypothetical protein YP_114875.1 2638724 R 243233 CDS YP_114876.1 53803378 3103497 complement(2639242..2639610) 1 NC_002977.6 hypothetical protein 2639610 3103497 MCA2462 Methylococcus capsulatus str. Bath hypothetical protein YP_114876.1 2639242 R 243233 CDS YP_114877.1 53803377 3103496 complement(2639588..2640295) 1 NC_002977.6 hypothetical protein 2640295 3103496 MCA2463 Methylococcus capsulatus str. Bath hypothetical protein YP_114877.1 2639588 R 243233 CDS YP_114878.1 53803376 3104332 2642600..2643811 1 NC_002977.6 identified by similarity to OMNI:NTL03ST2793; match to protein family HMM PF07690; lysophospholipid transporter LplT 2643811 3104332 MCA2465 Methylococcus capsulatus str. Bath lysophospholipid transporter LplT YP_114878.1 2642600 D 243233 CDS YP_114879.1 53803375 3104331 2643843..2644196 1 NC_002977.6 identified by similarity to OMNI:NTL03PA05495; hypothetical protein 2644196 3104331 MCA2466 Methylococcus capsulatus str. Bath hypothetical protein YP_114879.1 2643843 D 243233 CDS YP_114880.1 53803374 3102692 2644302..2645831 1 NC_002977.6 identified by similarity to SP:P06980; match to protein family HMM PF04262; match to protein family HMM TIGR01434; glutamate--cysteine ligase 2645831 gshA 3102692 gshA Methylococcus capsulatus str. Bath glutamate--cysteine ligase YP_114880.1 2644302 D 243233 CDS YP_114881.1 53803373 3102691 2645860..2646582 1 NC_002977.6 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 2646582 cysH 3102691 cysH Methylococcus capsulatus str. Bath phosphoadenosine phosphosulfate reductase YP_114881.1 2645860 D 243233 CDS YP_114882.1 53803372 3104953 complement(2646592..2647566) 1 NC_002977.6 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 2647566 cysB 3104953 cysB Methylococcus capsulatus str. Bath transcriptional regulator CysB YP_114882.1 2646592 R 243233 CDS YP_114883.1 53803364 3104931 complement(2647654..2647977) 1 NC_002977.6 identified by similarity to GP:142304; match to protein family HMM PF00037; ferredoxin, 4Fe-4S 2647977 3104931 MCA2470 Methylococcus capsulatus str. Bath ferredoxin, 4Fe-4S YP_114883.1 2647654 R 243233 CDS YP_114884.1 53803363 3104930 complement(2648106..2648909) 1 NC_002977.6 identified by similarity to OMNI:TM1415; match to protein family HMM PF00459; inositol monophosphatase 2648909 3104930 MCA2471 Methylococcus capsulatus str. Bath inositol monophosphatase YP_114884.1 2648106 R 243233 CDS YP_114885.1 53803362 3104130 2649133..2650830 1 NC_002977.6 identified by match to protein family HMM PF00916; sulfate transporter family protein 2650830 3104130 MCA2472 Methylococcus capsulatus str. Bath sulfate transporter family protein YP_114885.1 2649133 D 243233 CDS YP_114886.1 53803361 3104129 2650924..2652405 1 NC_002977.6 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 2652405 3104129 MCA2473 Methylococcus capsulatus str. Bath sensor histidine kinase YP_114886.1 2650924 D 243233 CDS YP_114887.1 53803360 3103524 2652395..2653789 1 NC_002977.6 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent DNA-binding response regulator 2653789 3103524 MCA2474 Methylococcus capsulatus str. Bath sigma-54 dependent DNA-binding response regulator YP_114887.1 2652395 D 243233 CDS YP_114888.1 53803359 3103523 complement(2654193..2655260) 1 NC_002977.6 Matches only weakly to riboflavin-specific deaminase in the N terminal end of the proteinidentified by match to protein family HMM PF00925; riboflavin-specific deaminase/GTP cyclohydrolase II 2655260 3103523 MCA2476 Methylococcus capsulatus str. Bath riboflavin-specific deaminase/GTP cyclohydrolase II YP_114888.1 2654193 R 243233 CDS YP_114889.1 53803351 3102528 complement(2655537..2657576) 1 NC_002977.6 identified by similarity to SP:P37512; match to protein family HMM PF03190; hypothetical protein 2657576 3102528 MCA2477 Methylococcus capsulatus str. Bath hypothetical protein YP_114889.1 2655537 R 243233 CDS YP_114890.1 53803350 3105085 complement(2657641..2657856) 1 NC_002977.6 hypothetical protein 2657856 3105085 MCA2478 Methylococcus capsulatus str. Bath hypothetical protein YP_114890.1 2657641 R 243233 CDS YP_114891.1 53803349 3105084 complement(2658269..2659396) 1 NC_002977.6 identified by similarity to SP:P13156; match to protein family HMM PF03977; match to protein family HMM TIGR01109; oxaloacetate decarboxylase subunit beta 2659396 oadB 3105084 oadB Methylococcus capsulatus str. Bath oxaloacetate decarboxylase subunit beta YP_114891.1 2658269 R 243233 CDS YP_114892.1 53803348 3103160 complement(2659410..2661206) 1 NC_002977.6 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 2661206 oadA 3103160 oadA Methylococcus capsulatus str. Bath oxaloacetate decarboxylase YP_114892.1 2659410 R 243233 CDS YP_114893.1 53803347 3103159 complement(2661230..2661487) 1 NC_002977.6 identified by similarity to SP:P13155; match to protein family HMM PF04277; match to protein family HMM TIGR01195; oxaloacetate decarboxylase subunit gamma 2661487 oadC 3103159 oadC Methylococcus capsulatus str. Bath oxaloacetate decarboxylase subunit gamma YP_114893.1 2661230 R 243233 CDS YP_114894.1 53803346 3104085 complement(2661610..2661903) 1 NC_002977.6 identified by similarity to GP:18159443; hypothetical protein 2661903 3104085 MCA2482 Methylococcus capsulatus str. Bath hypothetical protein YP_114894.1 2661610 R 243233 CDS YP_114895.1 53803345 3104084 2662165..2663388 1 NC_002977.6 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2663388 ispG 3104084 ispG Methylococcus capsulatus str. Bath 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_114895.1 2662165 D 243233 CDS YP_114896.1 53803337 3105005 complement(2663400..2664236) 1 NC_002977.6 identified by similarity to OMNI:NTL01NM00778; match to protein family HMM PF04305; hypothetical protein 2664236 3105005 MCA2484 Methylococcus capsulatus str. Bath hypothetical protein YP_114896.1 2663400 R 243233 CDS YP_114897.1 53803336 3104538 complement(2664233..2666809) 1 NC_002977.6 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 2666809 3104538 MCA2485 Methylococcus capsulatus str. Bath bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_114897.1 2664233 R 243233 CDS YP_114898.1 53803335 3104537 2666947..2667879 1 NC_002977.6 identified by match to protein family HMM PF00850; histone deacetylase/AcuC/AphA family protein 2667879 3104537 MCA2486 Methylococcus capsulatus str. Bath histone deacetylase/AcuC/AphA family protein YP_114898.1 2666947 D 243233 CDS YP_114899.1 53803334 3104468 complement(2667901..2669229) 1 NC_002977.6 identified by similarity to SP:O54068; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; UDP-glucose 6-dehydrogenase 2669229 ugd 3104468 ugd Methylococcus capsulatus str. Bath UDP-glucose 6-dehydrogenase YP_114899.1 2667901 R 243233 CDS YP_114900.1 53803333 3104467 complement(2669262..2670413) 1 NC_002977.6 catalyzes the conversion of O-succinylhomoserine into homocysteine; O-succinylhomoserine sulfhydrylase 2670413 metZ 3104467 metZ Methylococcus capsulatus str. Bath O-succinylhomoserine sulfhydrylase YP_114900.1 2669262 R 243233 CDS YP_114901.1 53803332 3102194 complement(2670457..2671965) 1 NC_002977.6 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 2671965 purF 3102194 purF Methylococcus capsulatus str. Bath amidophosphoribosyltransferase YP_114901.1 2670457 R 243233 CDS YP_114902.1 53803331 3102193 complement(2672002..2672535) 1 NC_002977.6 identified by similarity to SP:P08550; match to protein family HMM PF02674; CvpA family protein 2672535 3102193 MCA2490 Methylococcus capsulatus str. Bath CvpA family protein YP_114902.1 2672002 R 243233 CDS YP_114903.1 53803330 3102478 complement(2672539..2673342) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA03110; match to protein family HMM PF05036; hypothetical protein 2673342 3102478 MCA2491 Methylococcus capsulatus str. Bath hypothetical protein YP_114903.1 2672539 R 243233 CDS YP_114904.1 53803321 3104374 complement(2673335..2674630) 1 NC_002977.6 identified by similarity to SP:P08192; match to protein family HMM PF02875; match to protein family HMM TIGR01499; bifunctional folylpolyglutamate synthase/dihydrofolate synthase 2674630 folC 3104374 folC Methylococcus capsulatus str. Bath bifunctional folylpolyglutamate synthase/dihydrofolate synthase YP_114904.1 2673335 R 243233 CDS YP_114905.1 53803320 3104844 complement(2674634..2675608) 1 NC_002977.6 identified by similarity to SP:P08193; match to protein family HMM TIGR00515; acetyl-CoA carboxylase, carboxyl transferase subunit beta 2675608 accD 3104844 accD Methylococcus capsulatus str. Bath acetyl-CoA carboxylase, carboxyl transferase subunit beta YP_114905.1 2674634 R 243233 CDS YP_114906.1 53803319 3104843 complement(2675623..2676426) 1 NC_002977.6 identified by similarity to SP:Q9PDK3; match to protein family HMM PF00290; match to protein family HMM TIGR00262; tryptophan synthase subunit alpha 2676426 trpA 3104843 trpA Methylococcus capsulatus str. Bath tryptophan synthase subunit alpha YP_114906.1 2675623 R 243233 CDS YP_114907.1 53803318 3102171 complement(2676423..2677640) 1 NC_002977.6 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 2677640 trpB 3102171 trpB Methylococcus capsulatus str. Bath tryptophan synthase subunit beta YP_114907.1 2676423 R 243233 CDS YP_114908.1 53803317 3102170 complement(2677609..2678277) 1 NC_002977.6 identified by similarity to SP:Q59649; match to protein family HMM PF00697; N-(5'-phosphoribosyl)anthranilate isomerase 2678277 trpF 3102170 trpF Methylococcus capsulatus str. Bath N-(5'-phosphoribosyl)anthranilate isomerase YP_114908.1 2677609 R 243233 CDS YP_114909.1 53803316 3102344 complement(2678274..2679089) 1 NC_002977.6 identified by similarity to SP:P07649; match to protein family HMM PF01416; match to protein family HMM TIGR00071; tRNA pseudouridine synthase A 2679089 truA 3102344 truA Methylococcus capsulatus str. Bath tRNA pseudouridine synthase A YP_114909.1 2678274 R 243233 CDS YP_114910.1 53803308 3104676 complement(2679319..2679828) 1 NC_002977.6 hypothetical protein 2679828 3104676 MCA2498 Methylococcus capsulatus str. Bath hypothetical protein YP_114910.1 2679319 R 243233 CDS YP_114911.1 53803307 3104675 2679833..2679991 1 NC_002977.6 hypothetical protein 2679991 3104675 MCA2499 Methylococcus capsulatus str. Bath hypothetical protein YP_114911.1 2679833 D 243233 CDS YP_114912.1 53803306 3104424 2680079..2680747 1 NC_002977.6 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ 2680747 3104424 MCA2500 Methylococcus capsulatus str. Bath sulfite oxidase subunit YedZ YP_114912.1 2680079 D 243233 CDS YP_114913.1 53803305 3104423 complement(2680978..2681607) 1 NC_002977.6 hypothetical protein 2681607 3104423 MCA2501 Methylococcus capsulatus str. Bath hypothetical protein YP_114913.1 2680978 R 243233 CDS YP_114914.1 53803304 3102925 complement(2681682..2681855) 1 NC_002977.6 hypothetical protein 2681855 3102925 MCA2502 Methylococcus capsulatus str. Bath hypothetical protein YP_114914.1 2681682 R 243233 CDS YP_114915.1 53803303 3102924 complement(2681873..2682178) 1 NC_002977.6 hypothetical protein 2682178 3102924 MCA2503 Methylococcus capsulatus str. Bath hypothetical protein YP_114915.1 2681873 R 243233 CDS YP_114916.1 53803302 3103719 2682662..2683000 1 NC_002977.6 hypothetical protein 2683000 3103719 MCA2505 Methylococcus capsulatus str. Bath hypothetical protein YP_114916.1 2682662 D 243233 CDS YP_114917.1 53803301 3103718 complement(2683110..2683562) 1 NC_002977.6 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; Rrf2 family protein 2683562 3103718 MCA2506 Methylococcus capsulatus str. Bath Rrf2 family protein YP_114917.1 2683110 R 243233 CDS YP_114918.1 53803300 3103685 2683722..2684126 1 NC_002977.6 identified by similarity to SP:P73925; match to protein family HMM PF01152; hypothetical protein 2684126 3103685 MCA2507 Methylococcus capsulatus str. Bath hypothetical protein YP_114918.1 2683722 D 243233 CDS YP_114919.1 53803291 3103769 2684153..2685127 1 NC_002977.6 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; oxygenase 2685127 3103769 MCA2508 Methylococcus capsulatus str. Bath oxygenase YP_114919.1 2684153 D 243233 CDS YP_114920.2 161579542 3104036 complement(2685105..2686472) 1 NC_002977.6 Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation; chloride channel protein 2686472 3104036 MCA2509 Methylococcus capsulatus str. Bath chloride channel protein YP_114920.2 2685105 R 243233 CDS YP_114921.1 53803289 3103907 complement(2686417..2687145) 1 NC_002977.6 lipoprotein 2687145 3103907 MCA2510 Methylococcus capsulatus str. Bath lipoprotein YP_114921.1 2686417 R 243233 CDS YP_114922.1 53803288 3103605 2687316..2688416 1 NC_002977.6 identified by match to protein family HMM PF01609; ISMca1, transposase 2688416 3103605 MCA2511 Methylococcus capsulatus str. Bath ISMca1, transposase YP_114922.1 2687316 D 243233 CDS YP_114923.1 53803287 3103852 2688630..2690150 1 NC_002977.6 identified by similarity to GP:7650481; match to protein family HMM PF04185; acid phosphatase 2690150 3103852 MCA2512 Methylococcus capsulatus str. Bath acid phosphatase YP_114923.1 2688630 D 243233 CDS YP_114924.1 53803286 3103245 2690459..2692117 1 NC_002977.6 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 2692117 pyrG 3103245 pyrG Methylococcus capsulatus str. Bath CTP synthetase YP_114924.1 2690459 D 243233 CDS YP_114925.2 161579543 3104373 2692114..2692965 1 NC_002977.6 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 2692965 kdsA 3104373 kdsA Methylococcus capsulatus str. Bath 2-dehydro-3-deoxyphosphooctonate aldolase YP_114925.2 2692114 D 243233 CDS YP_114926.1 53803284 3103072 2693051..2694334 1 NC_002977.6 identified by similarity to SP:P08324; match to protein family HMM PF00113; match to protein family HMM PF03952; match to protein family HMM TIGR01060; enolase 2694334 eno-2 3103072 eno-2 Methylococcus capsulatus str. Bath enolase YP_114926.1 2693051 D 243233 CDS YP_114927.1 53803283 3103135 2694361..2694729 1 NC_002977.6 identified by match to protein family HMM PF04977; septum formation initiator family protein 2694729 3103135 MCA2516 Methylococcus capsulatus str. Bath septum formation initiator family protein YP_114927.1 2694361 D 243233 CDS YP_114928.1 53803275 3104080 2694719..2695423 1 NC_002977.6 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2695423 ispD 3104080 ispD Methylococcus capsulatus str. Bath 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_114928.1 2694719 D 243233 CDS YP_114929.1 53803274 3102974 2695411..2695887 1 NC_002977.6 identified by similarity to SP:P36663; match to protein family HMM PF02542; match to protein family HMM TIGR00151; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 2695887 ispF 3102974 ispF Methylococcus capsulatus str. Bath 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase YP_114929.1 2695411 D 243233 CDS YP_114930.1 53803273 3103594 2695884..2696948 1 NC_002977.6 catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 2696948 truD 3103594 truD Methylococcus capsulatus str. Bath tRNA pseudouridine synthase D YP_114930.1 2695884 D 243233 CDS YP_114931.1 53803272 3103984 2696984..2697334 1 NC_002977.6 identified by similarity to SP:P37311; match to protein family HMM PF03960; match to protein family HMM TIGR00014; arsenate reductase 2697334 arsC 3103984 arsC Methylococcus capsulatus str. Bath arsenate reductase YP_114931.1 2696984 D 243233 CDS YP_114932.1 53803271 3103917 2697359..2697976 1 NC_002977.6 identified by similarity to SP:P30849; match to protein family HMM PF00258; Trp repressor-binding protein 2697976 wrbA 3103917 wrbA Methylococcus capsulatus str. Bath Trp repressor-binding protein YP_114932.1 2697359 D 243233 CDS YP_114933.1 53803270 3103713 2698005..2698703 1 NC_002977.6 identified by similarity to OMNI:NTL03PA00948; DnaA domain-containing protein 2698703 3103713 MCA2522 Methylococcus capsulatus str. Bath DnaA domain-containing protein YP_114933.1 2698005 D 243233 CDS YP_114934.1 53803269 3104119 2698700..2699638 1 NC_002977.6 identified by match to protein family HMM PF02558; match to protein family HMM TIGR00745; 2-dehydropantoate 2-reductase 2699638 panE 3104119 panE Methylococcus capsulatus str. Bath 2-dehydropantoate 2-reductase YP_114934.1 2698700 D 243233 CDS YP_114935.1 53803268 3103182 2699635..2700024 1 NC_002977.6 identified by similarity to OMNI:NTL01SS02345; hypothetical protein 2700024 3103182 MCA2524 Methylococcus capsulatus str. Bath hypothetical protein YP_114935.1 2699635 D 243233 CDS YP_114936.1 53803260 3103346 complement(2700355..2701143) 1 NC_002977.6 identified by similarity to OMNI:NT01MC3769; hypothetical protein 2701143 3103346 MCA2525 Methylococcus capsulatus str. Bath hypothetical protein YP_114936.1 2700355 R 243233 CDS YP_114937.1 53803381 3104650 complement(2701155..2702171) 1 NC_002977.6 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 2702171 trpS 3104650 trpS Methylococcus capsulatus str. Bath tryptophanyl-tRNA synthetase YP_114937.1 2701155 R 243233 CDS YP_114938.1 53803380 3104060 2702635..2703048 1 NC_002977.6 identified by similarity to SP:Q46903; match to protein family HMM PF01242; 6-pyruvoyl tetrahydrobiopterin synthase 2703048 3104060 MCA2527 Methylococcus capsulatus str. Bath 6-pyruvoyl tetrahydrobiopterin synthase YP_114938.1 2702635 D 243233 CDS YP_114939.1 53803379 3104059 2703045..2703518 1 NC_002977.6 identified by similarity to OMNI:NTL01XF01262; hypothetical protein 2703518 3104059 MCA2528 Methylococcus capsulatus str. Bath hypothetical protein YP_114939.1 2703045 D 243233 CDS YP_114940.1 53803371 3104952 complement(2703521..2704651) 1 NC_002977.6 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 2704651 purK 3104952 purK Methylococcus capsulatus str. Bath phosphoribosylaminoimidazole carboxylase ATPase subunit YP_114940.1 2703521 R 243233 CDS YP_114941.1 53803370 3103794 complement(2704651..2705139) 1 NC_002977.6 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit 2705139 purE 3103794 purE Methylococcus capsulatus str. Bath phosphoribosylaminoimidazole carboxylase catalytic subunit YP_114941.1 2704651 R 243233 CDS YP_114942.1 53803369 3103793 2705323..2708172 1 NC_002977.6 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 2708172 hepA 3103793 hepA Methylococcus capsulatus str. Bath ATP-dependent helicase HepA YP_114942.1 2705323 D 243233 CDS YP_114943.1 53803368 3104993 complement(2708225..2708659) 1 NC_002977.6 identified by match to protein family HMM PF00011; HSP20 family protein 2708659 3104993 MCA2532 Methylococcus capsulatus str. Bath HSP20 family protein YP_114943.1 2708225 R 243233 CDS YP_114944.1 53803367 3104992 complement(2708760..2710085) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA05135; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxyl-terminal protease 2710085 3104992 MCA2533 Methylococcus capsulatus str. Bath carboxyl-terminal protease YP_114944.1 2708760 R 243233 CDS YP_114945.1 53803366 3104922 complement(2710137..2711282) 1 NC_002977.6 identified by match to protein family HMM PF01551; peptidase M23/M37 domain-containing protein 2711282 3104922 MCA2534 Methylococcus capsulatus str. Bath peptidase M23/M37 domain-containing protein YP_114945.1 2710137 R 243233 CDS YP_114946.1 53803365 3104921 2711598..2711900 1 NC_002977.6 identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 2711900 3104921 MCA2535 Methylococcus capsulatus str. Bath ArsR family transcriptional regulator YP_114946.1 2711598 D 243233 CDS YP_114947.1 53803358 3104758 2711973..2712410 1 NC_002977.6 identified by match to protein family HMM PF00581; rhodanese domain-containing protein 2712410 3104758 MCA2536 Methylococcus capsulatus str. Bath rhodanese domain-containing protein YP_114947.1 2711973 D 243233 CDS YP_114948.1 53803357 3104757 2712448..2712915 1 NC_002977.6 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 2712915 secB 3104757 secB Methylococcus capsulatus str. Bath preprotein translocase subunit SecB YP_114948.1 2712448 D 243233 CDS YP_114949.1 53803356 3105046 2712933..2713940 1 NC_002977.6 identified by similarity to SP:P37606; match to protein family HMM PF01210; match to protein family HMM PF07479; glycerol-3-phosphate dehydrogenase 2713940 gpsA 3105046 gpsA Methylococcus capsulatus str. Bath glycerol-3-phosphate dehydrogenase YP_114949.1 2712933 D 243233 CDS YP_114950.1 53803355 3105045 complement(2713937..2714416) 1 NC_002977.6 identified by similarity to SP:P33899; match to protein family HMM PF00588; match to protein family HMM TIGR00185; RNA methyltransferase 2714416 3105045 MCA2539 Methylococcus capsulatus str. Bath RNA methyltransferase YP_114950.1 2713937 R 243233 CDS YP_114951.1 53803354 3104436 complement(2714424..2716934) 1 NC_002977.6 identified by similarity to SP:P11217; match to protein family HMM TIGR02093; glycogen phosphorylase 2716934 glgP-2 3104436 glgP-2 Methylococcus capsulatus str. Bath glycogen phosphorylase YP_114951.1 2714424 R 243233 CDS YP_114952.1 53803353 3104435 complement(2717046..2718458) 1 NC_002977.6 identified by similarity to SP:P06713; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; match to protein family HMM TIGR01818; nitrogen regulation protein NR(I) 2718458 ntrC 3104435 ntrC Methylococcus capsulatus str. Bath nitrogen regulation protein NR(I) YP_114952.1 2717046 R 243233 CDS YP_114953.1 53803352 3102529 complement(2718424..2719518) 1 NC_002977.6 identified by similarity to SP:P06712; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; nitrogen regulation protein NR(II) 2719518 ntrB 3102529 ntrB Methylococcus capsulatus str. Bath nitrogen regulation protein NR(II) YP_114953.1 2718424 R 243233 CDS YP_114954.1 53803344 3104471 2719774..2723727 1 NC_002977.6 includes an intein; identified by similarity to OMNI:TM0118; match to protein family HMM PF02867; match to protein family HMM TIGR01443; match to protein family HMM TIGR01445; match to protein family HMM TIGR02504; ribonucleoside reductase 2723727 3104471 MCA2543 Methylococcus capsulatus str. Bath ribonucleoside reductase YP_114954.1 2719774 D 243233 CDS YP_114955.1 53803343 3104470 2723791..2725311 1 NC_002977.6 hypothetical protein 2725311 3104470 MCA2544 Methylococcus capsulatus str. Bath hypothetical protein YP_114955.1 2723791 D 243233 CDS YP_114956.1 53803342 3104710 complement(2725360..2726235) 1 NC_002977.6 hypothetical protein 2726235 3104710 MCA2545 Methylococcus capsulatus str. Bath hypothetical protein YP_114956.1 2725360 R 243233 CDS YP_114957.1 53803341 3104709 complement(2726241..2727083) 1 NC_002977.6 identified by similarity to OMNI:NTL01AP01225; hypothetical protein 2727083 3104709 MCA2546 Methylococcus capsulatus str. Bath hypothetical protein YP_114957.1 2726241 R 243233 CDS YP_114958.1 53803340 3102277 complement(2727052..2728242) 1 NC_002977.6 identified by similarity to GP:4753136; match to protein family HMM PF00534; glycosyl transferase family protein 2728242 3102277 MCA2547 Methylococcus capsulatus str. Bath glycosyl transferase family protein YP_114958.1 2727052 R 243233 CDS YP_114959.1 53803339 3102276 complement(2728239..2729606) 1 NC_002977.6 hypothetical protein 2729606 3102276 MCA2548 Methylococcus capsulatus str. Bath hypothetical protein YP_114959.1 2728239 R 243233 CDS YP_114960.1 53803338 3105006 complement(2729655..2730902) 1 NC_002977.6 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2730902 3105006 MCA2549 Methylococcus capsulatus str. Bath ABC transporter ATP-binding protein YP_114960.1 2729655 R 243233 CDS YP_114961.1 53803329 3102477 complement(2730899..2731681) 1 NC_002977.6 ABC transporter permease 2731681 3102477 MCA2550 Methylococcus capsulatus str. Bath ABC transporter permease YP_114961.1 2730899 R 243233 CDS YP_114962.1 53803328 3104885 complement(2731774..2732214) 1 NC_002977.6 hypothetical protein 2732214 3104885 MCA2551 Methylococcus capsulatus str. Bath hypothetical protein YP_114962.1 2731774 R 243233 CDS YP_114963.1 53803327 3104884 complement(2732435..2733373) 1 NC_002977.6 identified by match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase domain-containing protein 2733373 3104884 MCA2552 Methylococcus capsulatus str. Bath peptidyl-prolyl cis-trans isomerase domain-containing protein YP_114963.1 2732435 R 243233 CDS YP_114964.1 53803326 3103644 complement(2733392..2734351) 1 NC_002977.6 identified by match to protein family HMM PF01839; hypothetical protein 2734351 3103644 MCA2553 Methylococcus capsulatus str. Bath hypothetical protein YP_114964.1 2733392 R 243233 CDS YP_114965.1 53803325 3103643 2734618..2734809 1 NC_002977.6 hypothetical protein 2734809 3103643 MCA2554 Methylococcus capsulatus str. Bath hypothetical protein YP_114965.1 2734618 D 243233 CDS YP_114966.1 53803324 3104629 complement(2734915..2736300) 1 NC_002977.6 hypothetical protein 2736300 3104629 MCA2555 Methylococcus capsulatus str. Bath hypothetical protein YP_114966.1 2734915 R 243233 CDS YP_114967.1 53803323 3104628 complement(2736454..2737554) 1 NC_002977.6 identified by match to protein family HMM PF01609; ISMca1, transposase 2737554 3104628 MCA2556 Methylococcus capsulatus str. Bath ISMca1, transposase YP_114967.1 2736454 R 243233 CDS YP_114968.1 53803322 3104375 2738382..2739860 1 NC_002977.6 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 2739860 3104375 MCA2558 Methylococcus capsulatus str. Bath glycosyl transferase group 2 family protein YP_114968.1 2738382 D 243233 CDS YP_114969.1 53803315 3102343 2740479..2743352 1 NC_002977.6 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 2743352 3102343 MCA2561 Methylococcus capsulatus str. Bath glycosyl transferase group 2 family protein YP_114969.1 2740479 D 243233 CDS YP_114970.1 53803314 3103355 2743576..2745312 1 NC_002977.6 identified by match to protein family HMM PF00534; glycosyl transferase family protein 2745312 3103355 MCA2562 Methylococcus capsulatus str. Bath glycosyl transferase family protein YP_114970.1 2743576 D 243233 CDS YP_114971.1 53803313 3103354 2745396..2746265 1 NC_002977.6 identified by similarity to GP:8250587; hypothetical protein 2746265 3103354 MCA2563 Methylococcus capsulatus str. Bath hypothetical protein YP_114971.1 2745396 D 243233 CDS YP_114972.1 53803312 3102737 complement(2746761..2747651) 1 NC_002977.6 catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate; phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase 2747651 3102737 MCA2564 Methylococcus capsulatus str. Bath phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase YP_114972.1 2746761 R 243233 CDS YP_114973.1 53803311 3102736 2748031..2748330 1 NC_002977.6 hypothetical protein 2748330 3102736 MCA2565 Methylococcus capsulatus str. Bath hypothetical protein YP_114973.1 2748031 D 243233 CDS YP_114974.1 53803309 3102165 2748331..2749632 1 NC_002977.6 identified by similarity to GP:7649572; match to protein family HMM PF01565; oxidoreductase, FAD-binding 2749632 3102165 MCA2566 Methylococcus capsulatus str. Bath oxidoreductase, FAD-binding YP_114974.1 2748331 D 243233 CDS YP_114975.1 53803310 3102166 2749635..2750372 1 NC_002977.6 identified by match to protein family HMM PF00106; short chain dehydrogenase 2750372 3102166 MCA2567 Methylococcus capsulatus str. Bath short chain dehydrogenase YP_114975.1 2749635 D 243233 CDS YP_114976.1 53803299 3103684 complement(2750871..2751272) 1 NC_002977.6 hypothetical protein 2751272 3103684 MCA2569 Methylococcus capsulatus str. Bath hypothetical protein YP_114976.1 2750871 R 243233 CDS YP_114977.1 53803298 3104791 complement(2751269..2752570) 1 NC_002977.6 identified by similarity to OMNI:NTL02ML5433; hypothetical protein 2752570 3104791 MCA2570 Methylococcus capsulatus str. Bath hypothetical protein YP_114977.1 2751269 R 243233 CDS YP_114978.1 53803297 3104790 complement(2752619..2753716) 1 NC_002977.6 identified by similarity to GP:17130075; match to protein family HMM PF04055; radical SAM protein 2753716 3104790 MCA2571 Methylococcus capsulatus str. Bath radical SAM protein YP_114978.1 2752619 R 243233 CDS YP_114979.1 53803296 3102804 complement(2753716..2754096) 1 NC_002977.6 identified by similarity to OMNI:NTL01MT00637; match to protein family HMM PF01986; hypothetical protein 2754096 3102804 MCA2572 Methylococcus capsulatus str. Bath hypothetical protein YP_114979.1 2753716 R 243233 CDS YP_114980.1 53803295 3103895 complement(2754083..2756803) 1 NC_002977.6 identified by similarity to SP:P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF01612; match to protein family HMM PF02739; match to protein family HMM TIGR00593; DNA polymerase I 2756803 polI 3103895 polI Methylococcus capsulatus str. Bath DNA polymerase I YP_114980.1 2754083 R 243233 CDS YP_114981.1 53803294 3103335 2756975..2757415 1 NC_002977.6 identified by similarity to GP:12698380; hypothetical protein 2757415 3103335 MCA2574 Methylococcus capsulatus str. Bath hypothetical protein YP_114981.1 2756975 D 243233 CDS YP_114982.1 53803293 3103648 2757466..2758623 1 NC_002977.6 hypothetical protein 2758623 3103648 MCA2575 Methylococcus capsulatus str. Bath hypothetical protein YP_114982.1 2757466 D 243233 CDS YP_114983.1 53803292 3104438 complement(2758784..2761561) 1 NC_002977.6 identified by similarity to SP:P07658; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; formate dehydrogenase subunit alpha 2761561 3104438 MCA2576 Methylococcus capsulatus str. Bath formate dehydrogenase subunit alpha YP_114983.1 2758784 R 243233 CDS YP_114984.1 53803282 3104357 complement(2761558..2763243) 1 NC_002977.6 identified by similarity to GP:4007678; match to protein family HMM PF01257; match to protein family HMM PF01512; dehydrogenase subunit 2763243 3104357 MCA2577 Methylococcus capsulatus str. Bath dehydrogenase subunit YP_114984.1 2761558 R 243233 CDS YP_114985.1 53803281 3104058 complement(2763322..2764107) 1 NC_002977.6 identified by match to protein family HMM PF00005; molybdenum ABC transporter ATP-binding protein 2764107 3104058 MCA2578 Methylococcus capsulatus str. Bath molybdenum ABC transporter ATP-binding protein YP_114985.1 2763322 R 243233 CDS YP_114986.1 53803280 3103374 complement(2764132..2764800) 1 NC_002977.6 identified by similarity to SP:P09834; match to protein family HMM PF00528; match to protein family HMM TIGR02141; molybdenum ABC transporter permease 2764800 3103374 MCA2579 Methylococcus capsulatus str. Bath molybdenum ABC transporter permease YP_114986.1 2764132 R 243233 CDS YP_114987.1 53803279 3103539 complement(2764818..2765576) 1 NC_002977.6 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdenum ABC transporter substrate-binding protein 2765576 3103539 MCA2580 Methylococcus capsulatus str. Bath molybdenum ABC transporter substrate-binding protein YP_114987.1 2764818 R 243233 CDS YP_114988.1 53803277 3104203 2766321..2767013 1 NC_002977.6 identified by similarity to SP:P32661; match to protein family HMM PF00834; match to protein family HMM TIGR01163; ribulose-phosphate 3-epimerase 2767013 rpe 3104203 rpe Methylococcus capsulatus str. Bath ribulose-phosphate 3-epimerase YP_114988.1 2766321 D 243233 CDS YP_114989.1 53803278 3103155 2767010..2767693 1 NC_002977.6 identified by similarity to SP:P32662; match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; phosphoglycolate phosphatase 2767693 cbbZ 3103155 cbbZ Methylococcus capsulatus str. Bath phosphoglycolate phosphatase YP_114989.1 2767010 D 243233 CDS YP_114990.1 53803276 3104398 2767812..2769299 1 NC_002977.6 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 2769299 trpE 3104398 trpE Methylococcus capsulatus str. Bath anthranilate synthase component I YP_114990.1 2767812 D 243233 CDS YP_114991.1 53803267 3103723 2769296..2769883 1 NC_002977.6 identified by similarity to SP:P20576; match to protein family HMM PF00117; match to protein family HMM TIGR00566; anthranilate synthase component II 2769883 trpG 3103723 trpG Methylococcus capsulatus str. Bath anthranilate synthase component II YP_114991.1 2769296 D 243233 CDS YP_114992.1 53803265 3103255 2769890..2770915 1 NC_002977.6 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 2770915 trpD 3103255 trpD Methylococcus capsulatus str. Bath anthranilate phosphoribosyltransferase YP_114992.1 2769890 D 243233 CDS YP_114993.1 53803266 3102978 2770921..2771718 1 NC_002977.6 identified by similarity to SP:P20577; match to protein family HMM PF00218; indole-3-glycerol phosphate synthase 2771718 3102978 MCA2587 Methylococcus capsulatus str. Bath indole-3-glycerol phosphate synthase YP_114993.1 2770921 D 243233 CDS YP_114994.1 53803264 3104051 2771762..2772826 1 NC_002977.6 identified by similarity to SP:P21645; match to protein family HMM PF00132; match to protein family HMM TIGR01853; UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase 2772826 lpxD 3104051 lpxD Methylococcus capsulatus str. Bath UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase YP_114994.1 2771762 D 243233 CDS YP_114995.1 53803263 3103778 complement(2772925..2774547) 1 NC_002977.6 identified by similarity to GP:13506915; surface-associated protein 2774547 mopE 3103778 mopE Methylococcus capsulatus str. Bath surface-associated protein YP_114995.1 2772925 R 243233 CDS YP_114996.1 53803262 3103502 complement(2774574..2776895) 1 NC_002977.6 cytochrome c peroxidase 2776895 3103502 MCA2590 Methylococcus capsulatus str. Bath cytochrome c peroxidase YP_114996.1 2774574 R 243233 CDS YP_114997.1 53803261 3104028 complement(2777117..2777212) 1 NC_002977.6 aquaporin Z domain-containing protein 2777212 3104028 MCA2591 Methylococcus capsulatus str. Bath aquaporin Z domain-containing protein YP_114997.1 2777117 R 243233 CDS YP_114998.1 53803252 3104232 complement(2777312..2777974) 1 NC_002977.6 identified by similarity to OMNI:NT01MC0675; hypothetical protein 2777974 3104232 MCA2592 Methylococcus capsulatus str. Bath hypothetical protein YP_114998.1 2777312 R 243233 CDS YP_114999.1 53803251 3103145 2778072..2779199 1 NC_002977.6 identified by similarity to GP:498170; match to protein family HMM PF00278; carboxynorspermidine decarboxylase 2779199 nspC 3103145 nspC Methylococcus capsulatus str. Bath carboxynorspermidine decarboxylase YP_114999.1 2778072 D 243233 CDS YP_115000.1 53803250 3103161 complement(2779193..2781394) 1 NC_002977.6 identified by similarity to SP:P17888; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM TIGR00595; primosomal protein N` 2781394 priA 3103161 priA Methylococcus capsulatus str. Bath primosomal protein N` YP_115000.1 2779193 R 243233 CDS YP_115001.1 53803249 3102717 2781759..2782349 1 NC_002977.6 identified by similarity to OMNI:NTL01XF01913; match to protein family HMM PF01844; HNH endonuclease domain-containing protein 2782349 3102717 MCA2596 Methylococcus capsulatus str. Bath HNH endonuclease domain-containing protein YP_115001.1 2781759 D 243233 CDS YP_115002.1 53803248 3102928 complement(2782363..2783829) 1 NC_002977.6 identified by similarity to SP:P21599; match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase 2783829 pyk 3102928 pyk Methylococcus capsulatus str. Bath pyruvate kinase YP_115002.1 2782363 R 243233 CDS YP_115003.1 53803247 3103545 complement(2783826..2784836) 1 NC_002977.6 identified by similarity to SP:P50321; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde 3-phosphate dehydrogenase 2784836 gap 3103545 gap Methylococcus capsulatus str. Bath glyceraldehyde 3-phosphate dehydrogenase YP_115003.1 2783826 R 243233 CDS YP_115004.1 53803246 3103796 complement(2785084..2785557) 1 NC_002977.6 hypothetical protein 2785557 3103796 MCA2599 Methylococcus capsulatus str. Bath hypothetical protein YP_115004.1 2785084 R 243233 CDS YP_115005.1 53803245 3103610 2785556..2787910 1 NC_002977.6 identified by match to protein family HMM PF05362; ATP-dependent protease 2787910 3103610 MCA2600 Methylococcus capsulatus str. Bath ATP-dependent protease YP_115005.1 2785556 D 243233 CDS YP_115006.1 53803236 3103581 complement(2787918..2788766) 1 NC_002977.6 identified by similarity to GP:4008541; match to protein family HMM PF03372; hypothetical protein 2788766 3103581 MCA2601 Methylococcus capsulatus str. Bath hypothetical protein YP_115006.1 2787918 R 243233 CDS YP_115007.1 53803235 3104110 complement(2788778..2789428) 1 NC_002977.6 identified by similarity to SP:P32557; match to protein family HMM PF01323; thiol:disulfide interchange protein DsbA 2789428 dsbA 3104110 dsbA Methylococcus capsulatus str. Bath thiol:disulfide interchange protein DsbA YP_115007.1 2788778 R 243233 CDS YP_115008.1 53803259 3104136 complement(2789536..2790144) 1 NC_002977.6 identified by similarity to SP:P43302; match to protein family HMM PF00034; cytochrome c family protein 2790144 3104136 MCA2603 Methylococcus capsulatus str. Bath cytochrome c family protein YP_115008.1 2789536 R 243233 CDS YP_115009.1 53803258 3103550 2790310..2790942 1 NC_002977.6 identified by similarity to SP:Q9HT81; match to protein family HMM TIGR00650; GTP-binding protein 2790942 3103550 MCA2604 Methylococcus capsulatus str. Bath GTP-binding protein YP_115009.1 2790310 D 243233 CDS YP_115010.1 53803257 3103049 complement(2791084..2792346) 1 NC_002977.6 identified by similarity to GP:6409238; match to protein family HMM PF00128; alpha amylase 2792346 3103049 MCA2605 Methylococcus capsulatus str. Bath alpha amylase YP_115010.1 2791084 R 243233 CDS YP_115011.1 53803256 3104148 complement(2792353..2793894) 1 NC_002977.6 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 2793894 glgA 3104148 glgA Methylococcus capsulatus str. Bath glycogen synthase YP_115011.1 2792353 R 243233 CDS YP_115012.1 53803255 3103897 2794498..2796573 1 NC_002977.6 identified by match to protein family HMM PF02554; carbon starvation protein CstA 2796573 cstA 3103897 cstA Methylococcus capsulatus str. Bath carbon starvation protein CstA YP_115012.1 2794498 D 243233 CDS YP_115013.1 53803254 3103892 2796587..2799064 1 NC_002977.6 identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein 2799064 3103892 MCA2608 Methylococcus capsulatus str. Bath mechanosensitive ion channel family protein YP_115013.1 2796587 D 243233 CDS YP_115014.1 53803253 3103566 complement(2799021..2799833) 1 NC_002977.6 identified by match to protein family HMM PF00459; inositol monophosphatase 2799833 3103566 MCA2609 Methylococcus capsulatus str. Bath inositol monophosphatase YP_115014.1 2799021 R 243233 CDS YP_115015.1 53803244 3103586 2799932..2800675 1 NC_002977.6 identified by similarity to SP:P77438; match to protein family HMM PF00588; match to protein family HMM TIGR00050; RNA methyltransferase 2800675 3103586 MCA2610 Methylococcus capsulatus str. Bath RNA methyltransferase YP_115015.1 2799932 D 243233 CDS YP_115016.1 53803243 3102932 2800659..2801444 1 NC_002977.6 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine acetyltransferase 2801444 cysE-2 3102932 cysE-2 Methylococcus capsulatus str. Bath serine acetyltransferase YP_115016.1 2800659 D 243233 CDS YP_115017.1 53803242 3104380 complement(2801422..2801847) 1 NC_002977.6 identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein 2801847 3104380 MCA2612 Methylococcus capsulatus str. Bath rhodanese-like domain-containing protein YP_115017.1 2801422 R 243233 CDS YP_115018.1 53803241 3103593 2802293..2803108 1 NC_002977.6 identified by similarity to GP:17427791; match to protein family HMM PF00085; thioredoxin family protein 2803108 3103593 MCA2614 Methylococcus capsulatus str. Bath thioredoxin family protein YP_115018.1 2802293 D 243233 CDS YP_115019.1 53803240 3103366 2803125..2803763 1 NC_002977.6 identified by similarity to SP:P77790; match to protein family HMM PF01427; D-alanyl-D-alanine dipeptidase 2803763 vanX 3103366 vanX Methylococcus capsulatus str. Bath D-alanyl-D-alanine dipeptidase YP_115019.1 2803125 D 243233 CDS YP_115020.1 53803239 3104547 2803864..2804625 1 NC_002977.6 identified by match to protein family HMM PF01694; rhomboid family protein 2804625 3104547 MCA2616 Methylococcus capsulatus str. Bath rhomboid family protein YP_115020.1 2803864 D 243233 CDS YP_115021.1 53803238 3103642 complement(2804680..2804973) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA02805; hypothetical protein 2804973 3103642 MCA2617 Methylococcus capsulatus str. Bath hypothetical protein YP_115021.1 2804680 R 243233 CDS YP_115022.1 53803237 3103865 2805227..2805598 1 NC_002977.6 identified by similarity to SP:P04369; match to protein family HMM PF00034; cytochrome c-555 2805598 3103865 MCA2618 Methylococcus capsulatus str. Bath cytochrome c-555 YP_115022.1 2805227 D 243233 CDS YP_115023.1 53803228 3103734 complement(2805688..2806776) 1 NC_002977.6 identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase 2806776 3103734 MCA2619 Methylococcus capsulatus str. Bath D-alanyl-D-alanine carboxypeptidase YP_115023.1 2805688 R 243233 CDS YP_115024.1 53803227 3103118 complement(2806860..2807333) 1 NC_002977.6 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2807333 smpB 3103118 smpB Methylococcus capsulatus str. Bath SsrA-binding protein YP_115024.1 2806860 R 243233 CDS YP_115025.1 53803226 3104502 2807461..2808819 1 NC_002977.6 identified by match to protein family HMM PF00209; sodium-dependent transporter family protein 2808819 3104502 MCA2621 Methylococcus capsulatus str. Bath sodium-dependent transporter family protein YP_115025.1 2807461 D 243233 CDS YP_115026.1 53803225 3103424 complement(2809121..2809606) 1 NC_002977.6 identified by similarity to SP:P23089; match to protein family HMM PF04355; small protein A 2809606 smpA 3103424 smpA Methylococcus capsulatus str. Bath small protein A YP_115026.1 2809121 R 243233 CDS YP_115027.1 53803224 3103387 2809651..2810082 1 NC_002977.6 identified by similarity to SP:P06975; match to protein family HMM PF01475; ferric uptake regulation protein 2810082 fur 3103387 fur Methylococcus capsulatus str. Bath ferric uptake regulation protein YP_115027.1 2809651 D 243233 CDS YP_115028.1 53803223 3103209 2810105..2811352 1 NC_002977.6 identified by similarity to SP:P75958; match to protein family HMM PF02687; match to protein family HMM TIGR02212; lipoprotein ABC transporter permease LolE 2811352 3103209 MCA2624 Methylococcus capsulatus str. Bath lipoprotein ABC transporter permease LolE YP_115028.1 2810105 D 243233 CDS YP_115029.1 53803222 3103447 2811345..2812019 1 NC_002977.6 identified by similarity to SP:P75957; match to protein family HMM PF00005; match to protein family HMM TIGR02211; lipoprotein ABC transporter ATP-binding protein LolD 2812019 3103447 MCA2625 Methylococcus capsulatus str. Bath lipoprotein ABC transporter ATP-binding protein LolD YP_115029.1 2811345 D 243233 CDS YP_115030.1 53803221 3104097 complement(2812032..2812628) 1 NC_002977.6 identified by similarity to OMNI:VC1880; hypothetical protein 2812628 3104097 MCA2626 Methylococcus capsulatus str. Bath hypothetical protein YP_115030.1 2812032 R 243233 CDS YP_115031.1 53803220 3104406 2812645..2815050 1 NC_002977.6 identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361; DNA internalization-related competence protein ComEC/Rec2 2815050 3104406 MCA2627 Methylococcus capsulatus str. Bath DNA internalization-related competence protein ComEC/Rec2 YP_115031.1 2812645 D 243233 CDS YP_115032.1 53803219 3103637 complement(2815013..2816662) 1 NC_002977.6 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR02034; in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from EScherichia coli involved in cysteine biosynthesis; bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase 2816662 3103637 MCA2628 Methylococcus capsulatus str. Bath bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase YP_115032.1 2815013 R 243233 CDS YP_115033.1 53803218 3104542 complement(2816780..2817688) 1 NC_002977.6 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase 2817688 cysD 3104542 cysD Methylococcus capsulatus str. Bath sulfate adenylyltransferase YP_115033.1 2816780 R 243233 CDS YP_115034.1 53803217 3103020 complement(2817865..2818632) 1 NC_002977.6 hypothetical protein 2818632 3103020 MCA2630 Methylococcus capsulatus str. Bath hypothetical protein YP_115034.1 2817865 R 243233 CDS YP_115035.1 53803216 3103367 complement(2818798..2819052) 1 NC_002977.6 hypothetical protein 2819052 3103367 MCA2631 Methylococcus capsulatus str. Bath hypothetical protein YP_115035.1 2818798 R 243233 CDS YP_115036.1 53803215 3103950 complement(2819179..2819643) 1 NC_002977.6 identified by similarity to OMNI:NTL01RS3173; hypothetical protein 2819643 3103950 MCA2632 Methylococcus capsulatus str. Bath hypothetical protein YP_115036.1 2819179 R 243233 CDS YP_115037.1 53803206 3103382 complement(2819640..2820023) 1 NC_002977.6 prophage LambdaMc01, site-specific recombinase resolvase, truncation 2820023 3103382 MCA2633 Methylococcus capsulatus str. Bath prophage LambdaMc01, site-specific recombinase resolvase, truncation YP_115037.1 2819640 R 243233 CDS YP_115038.1 53803205 3103765 complement(2820020..2821399) 1 NC_002977.6 identified by similarity to GP:17430196; match to protein family HMM PF00239; match to protein family HMM PF07508; prophage LambdaMc01, site-specific recombinase resolvase 2821399 3103765 MCA2634 Methylococcus capsulatus str. Bath prophage LambdaMc01, site-specific recombinase resolvase YP_115038.1 2820020 R 243233 CDS YP_115039.1 53803204 3104466 complement(2821399..2821842) 1 NC_002977.6 identified by similarity to OMNI:NTL01RS3170; hypothetical protein 2821842 3104466 MCA2635 Methylococcus capsulatus str. Bath hypothetical protein YP_115039.1 2821399 R 243233 CDS YP_115040.1 53803203 3104112 complement(2821842..2822105) 1 NC_002977.6 hypothetical protein 2822105 3104112 MCA2636 Methylococcus capsulatus str. Bath hypothetical protein YP_115040.1 2821842 R 243233 CDS YP_115041.1 53803202 3104115 complement(2822119..2824365) 1 NC_002977.6 identified by similarity to GP:17430265; hypothetical protein 2824365 3104115 MCA2637 Methylococcus capsulatus str. Bath hypothetical protein YP_115041.1 2822119 R 243233 CDS YP_115042.1 53803201 3103743 complement(2824384..2824956) 1 NC_002977.6 identified by similarity to GP:3378296; hypothetical protein 2824956 3103743 MCA2638 Methylococcus capsulatus str. Bath hypothetical protein YP_115042.1 2824384 R 243233 CDS YP_115043.1 53803200 3104383 complement(2824961..2825422) 1 NC_002977.6 identified by similarity to GP:17430264; match to protein family HMM PF00376; match to protein family HMM TIGR01764; hypothetical protein 2825422 3104383 MCA2639 Methylococcus capsulatus str. Bath hypothetical protein YP_115043.1 2824961 R 243233 CDS YP_115044.1 53803192 3102697 2825651..2825914 1 NC_002977.6 identified by similarity to GP:17430263; hypothetical protein 2825914 3102697 MCA2640 Methylococcus capsulatus str. Bath hypothetical protein YP_115044.1 2825651 D 243233 CDS YP_115045.1 53803191 3103181 2825925..2826404 1 NC_002977.6 identified by similarity to GP:17430262; hypothetical protein 2826404 3103181 MCA2641 Methylococcus capsulatus str. Bath hypothetical protein YP_115045.1 2825925 D 243233 CDS YP_115046.1 53803190 3104531 2826408..2827166 1 NC_002977.6 identified by similarity to OMNI:NTL01XF01664; match to protein family HMM PF02498; hypothetical protein 2827166 3104531 MCA2642 Methylococcus capsulatus str. Bath hypothetical protein YP_115046.1 2826408 D 243233 CDS YP_115047.1 53803189 3103226 2827166..2827984 1 NC_002977.6 identified by similarity to GP:17427847; hypothetical protein 2827984 3103226 MCA2643 Methylococcus capsulatus str. Bath hypothetical protein YP_115047.1 2827166 D 243233 CDS YP_115048.1 53803188 3103475 2827988..2828614 1 NC_002977.6 identified by similarity to GP:17430259; hypothetical protein 2828614 3103475 MCA2644 Methylococcus capsulatus str. Bath hypothetical protein YP_115048.1 2827988 D 243233 CDS YP_115049.1 53803187 3104570 2828676..2829149 1 NC_002977.6 identified by similarity to GP:17430258; hypothetical protein 2829149 3104570 MCA2645 Methylococcus capsulatus str. Bath hypothetical protein YP_115049.1 2828676 D 243233 CDS YP_115050.1 53803186 3102950 2829149..2829877 1 NC_002977.6 identified by similarity to GP:17430256; hypothetical protein 2829877 3102950 MCA2646 Methylococcus capsulatus str. Bath hypothetical protein YP_115050.1 2829149 D 243233 CDS YP_115051.1 53803185 3104425 2829881..2830153 1 NC_002977.6 identified by similarity to GP:17430255; hypothetical protein 2830153 3104425 MCA2647 Methylococcus capsulatus str. Bath hypothetical protein YP_115051.1 2829881 D 243233 CDS YP_115052.1 53803176 3104426 2830150..2832417 1 NC_002977.6 identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613; hypothetical protein 2832417 3104426 MCA2648 Methylococcus capsulatus str. Bath hypothetical protein YP_115052.1 2830150 D 243233 CDS YP_115053.1 53803175 3103722 2832553..2833029 1 NC_002977.6 identified by similarity to OMNI:NTL01RS3228; hypothetical protein 2833029 3103722 MCA2649 Methylococcus capsulatus str. Bath hypothetical protein YP_115053.1 2832553 D 243233 CDS YP_115054.1 53803174 3104178 2833031..2833240 1 NC_002977.6 identified by similarity to GP:17427852; hypothetical protein 2833240 3104178 MCA2650 Methylococcus capsulatus str. Bath hypothetical protein YP_115054.1 2833031 D 243233 CDS YP_115055.1 53803173 3104475 2833233..2833649 1 NC_002977.6 identified by similarity to GP:17430251; hypothetical protein 2833649 3104475 MCA2651 Methylococcus capsulatus str. Bath hypothetical protein YP_115055.1 2833233 D 243233 CDS YP_115056.1 53803172 3103573 2833646..2833882 1 NC_002977.6 identified by similarity to OMNI:NTL02ML1026; hypothetical protein 2833882 3103573 MCA2652 Methylococcus capsulatus str. Bath hypothetical protein YP_115056.1 2833646 D 243233 CDS YP_115057.1 53803171 3104031 2833879..2834214 1 NC_002977.6 identified by similarity to OMNI:NTL01SMA00299; match to protein family HMM PF05016; hypothetical protein 2834214 3104031 MCA2653 Methylococcus capsulatus str. Bath hypothetical protein YP_115057.1 2833879 D 243233 CDS YP_115058.1 53803170 3103751 2834667..2836010 1 NC_002977.6 identified by match to protein family HMM PF01555; prophage LambdaMc01, DNA methyltransferase 2836010 3103751 MCA2654 Methylococcus capsulatus str. Bath prophage LambdaMc01, DNA methyltransferase YP_115058.1 2834667 D 243233 CDS YP_115059.1 53803169 3104508 2836007..2837272 1 NC_002977.6 identified by similarity to GP:17427857; match to protein family HMM PF01555; match to protein family HMM PF02195; prophage LambdaMc01, DNA methyltransferase 2837272 3104508 MCA2655 Methylococcus capsulatus str. Bath prophage LambdaMc01, DNA methyltransferase YP_115059.1 2836007 D 243233 CDS YP_115060.1 53803160 3104344 complement(2837239..2837829) 1 NC_002977.6 identified by similarity to GP:17430238; hypothetical protein 2837829 3104344 MCA2656 Methylococcus capsulatus str. Bath hypothetical protein YP_115060.1 2837239 R 243233 CDS YP_115061.1 53803159 3103435 2837940..2838476 1 NC_002977.6 identified by similarity to OMNI:NTL01RSA0579; hypothetical protein 2838476 3103435 MCA2657 Methylococcus capsulatus str. Bath hypothetical protein YP_115061.1 2837940 D 243233 CDS YP_115062.1 53803158 3103771 2838476..2840446 1 NC_002977.6 identified by match to protein family HMM PF05876; prophage LambdaMc01, terminase, large subunit 2840446 3103771 MCA2658 Methylococcus capsulatus str. Bath prophage LambdaMc01, terminase, large subunit YP_115062.1 2838476 D 243233 CDS YP_115063.1 53803157 3104574 2840454..2840660 1 NC_002977.6 identified by similarity to GP:17427868; hypothetical protein 2840660 3104574 MCA2659 Methylococcus capsulatus str. Bath hypothetical protein YP_115063.1 2840454 D 243233 CDS YP_115064.1 53803156 3103437 2840660..2842168 1 NC_002977.6 identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539; prophage LambdaMc01, lambda family portal protein 2842168 3103437 MCA2660 Methylococcus capsulatus str. Bath prophage LambdaMc01, lambda family portal protein YP_115064.1 2840660 D 243233 CDS YP_115065.1 53803155 3104473 2842178..2843404 1 NC_002977.6 identified by match to protein family HMM PF01343; prophage LambdaMc01, U7 family peptidase 2843404 3104473 MCA2661 Methylococcus capsulatus str. Bath prophage LambdaMc01, U7 family peptidase YP_115065.1 2842178 D 243233 CDS YP_115066.1 53803154 3103094 2843406..2843783 1 NC_002977.6 identified by similarity to OMNI:NTL01RS0859; hypothetical protein 2843783 3103094 MCA2662 Methylococcus capsulatus str. Bath hypothetical protein YP_115066.1 2843406 D 243233 CDS YP_115067.1 53803153 3103783 2843786..2844802 1 NC_002977.6 identified by similarity to GP:6723249; hypothetical protein 2844802 3103783 MCA2663 Methylococcus capsulatus str. Bath hypothetical protein YP_115067.1 2843786 D 243233 CDS YP_115068.1 53803137 3104234 2844799..2845101 1 NC_002977.6 identified by similarity to GP:17427873; hypothetical protein 2845101 3104234 MCA2664 Methylococcus capsulatus str. Bath hypothetical protein YP_115068.1 2844799 D 243233 CDS YP_115069.1 53803136 3104177 2845105..2845551 1 NC_002977.6 identified by similarity to GP:17427874; hypothetical protein 2845551 3104177 MCA2665 Methylococcus capsulatus str. Bath hypothetical protein YP_115069.1 2845105 D 243233 CDS YP_115070.1 53803135 3103813 2845558..2845758 1 NC_002977.6 hypothetical protein 2845758 3103813 MCA2666 Methylococcus capsulatus str. Bath hypothetical protein YP_115070.1 2845558 D 243233 CDS YP_115071.1 53803134 3103298 2845755..2846507 1 NC_002977.6 identified by similarity to GP:17427875; hypothetical protein 2846507 3103298 MCA2667 Methylococcus capsulatus str. Bath hypothetical protein YP_115071.1 2845755 D 243233 CDS YP_115072.1 53803133 3104135 2846521..2846916 1 NC_002977.6 identified by similarity to GP:17427876; hypothetical protein 2846916 3104135 MCA2668 Methylococcus capsulatus str. Bath hypothetical protein YP_115072.1 2846521 D 243233 CDS YP_115073.1 53803132 3104220 2847013..2847741 1 NC_002977.6 identified by similarity to GP:17427878; hypothetical protein 2847741 3104220 MCA2669 Methylococcus capsulatus str. Bath hypothetical protein YP_115073.1 2847013 D 243233 CDS YP_115074.1 53803131 3103936 2847759..2851790 1 NC_002977.6 identified by similarity to GP:6901589; prophage LambdaMc01, tail tape measure protein 2851790 3103936 MCA2670 Methylococcus capsulatus str. Bath prophage LambdaMc01, tail tape measure protein YP_115074.1 2847759 D 243233 CDS YP_115075.1 53803130 3103955 2851834..2852208 1 NC_002977.6 identified by similarity to OMNI:NT01MC3182; hypothetical protein 2852208 3103955 MCA2671 Methylococcus capsulatus str. Bath hypothetical protein YP_115075.1 2851834 D 243233 CDS YP_115076.1 53803122 3103370 2852211..2855795 1 NC_002977.6 identified by similarity to GP:17427887; hypothetical protein 2855795 3103370 MCA2672 Methylococcus capsulatus str. Bath hypothetical protein YP_115076.1 2852211 D 243233 CDS YP_115077.1 53803121 3103696 2855819..2857087 1 NC_002977.6 identified by similarity to GP:17427888; hypothetical protein 2857087 3103696 MCA2673 Methylococcus capsulatus str. Bath hypothetical protein YP_115077.1 2855819 D 243233 CDS YP_115078.1 53803120 3103710 2857091..2858176 1 NC_002977.6 identified by similarity to GP:17427889; hypothetical protein 2858176 3103710 MCA2674 Methylococcus capsulatus str. Bath hypothetical protein YP_115078.1 2857091 D 243233 CDS YP_115079.1 53803119 3103777 2858173..2858568 1 NC_002977.6 identified by similarity to GP:17427890; hypothetical protein 2858568 3103777 MCA2675 Methylococcus capsulatus str. Bath hypothetical protein YP_115079.1 2858173 D 243233 CDS YP_115080.1 53803118 3104061 2858572..2860530 1 NC_002977.6 hypothetical protein 2860530 3104061 MCA2676 Methylococcus capsulatus str. Bath hypothetical protein YP_115080.1 2858572 D 243233 CDS YP_115081.1 53803117 3103692 2860523..2860744 1 NC_002977.6 identified by similarity to GP:17427892; hypothetical protein 2860744 3103692 MCA2677 Methylococcus capsulatus str. Bath hypothetical protein YP_115081.1 2860523 D 243233 CDS YP_115082.1 53803116 3103058 2860831..2861133 1 NC_002977.6 identified by similarity to GP:17427893; hypothetical protein 2861133 3103058 MCA2678 Methylococcus capsulatus str. Bath hypothetical protein YP_115082.1 2860831 D 243233 CDS YP_115083.1 53803115 3103115 2861130..2861606 1 NC_002977.6 identified by similarity to GP:17430219; hypothetical protein 2861606 3103115 MCA2679 Methylococcus capsulatus str. Bath hypothetical protein YP_115083.1 2861130 D 243233 CDS YP_115084.1 53803105 3103378 2861603..2862061 1 NC_002977.6 identified by similarity to SP:P10439; match to protein family HMM PF00959; prophage LambdaMc01, lysozyme 2862061 3103378 MCA2680 Methylococcus capsulatus str. Bath prophage LambdaMc01, lysozyme YP_115084.1 2861603 D 243233 CDS YP_115085.1 53803234 3103935 complement(2862062..2863246) 1 NC_002977.6 hypothetical protein 2863246 3103935 MCA2681 Methylococcus capsulatus str. Bath hypothetical protein YP_115085.1 2862062 R 243233 CDS YP_115086.1 53803233 3104092 complement(2863366..2866143) 1 NC_002977.6 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851; prophage LambdaMc01, SNF2 family helicase 2866143 3104092 MCA2682 Methylococcus capsulatus str. Bath prophage LambdaMc01, SNF2 family helicase YP_115086.1 2863366 R 243233 CDS YP_115087.1 53803232 3104589 complement(2866153..2866653) 1 NC_002977.6 hypothetical protein 2866653 3104589 MCA2683 Methylococcus capsulatus str. Bath hypothetical protein YP_115087.1 2866153 R 243233 CDS YP_115088.1 53803231 3103056 complement(2866650..2869787) 1 NC_002977.6 identified by similarity to GP:19887865; hypothetical protein 2869787 3103056 MCA2684 Methylococcus capsulatus str. Bath hypothetical protein YP_115088.1 2866650 R 243233 CDS YP_115089.1 53803230 3104400 complement(2869886..2870875) 1 NC_002977.6 hypothetical protein 2870875 3104400 MCA2685 Methylococcus capsulatus str. Bath hypothetical protein YP_115089.1 2869886 R 243233 CDS YP_115090.1 53803229 3103914 complement(2870875..2873616) 1 NC_002977.6 hypothetical protein 2873616 3103914 MCA2686 Methylococcus capsulatus str. Bath hypothetical protein YP_115090.1 2870875 R 243233 CDS YP_115091.1 53803214 3104116 2873899..2874999 1 NC_002977.6 identified by match to protein family HMM PF01609; prophage LambdaMc01, ISMca1, transposase 2874999 3104116 MCA2687 Methylococcus capsulatus str. Bath prophage LambdaMc01, ISMca1, transposase YP_115091.1 2873899 D 243233 CDS YP_115092.1 53803213 3103839 2875560..2875922 1 NC_002977.6 hypothetical protein 2875922 3103839 MCA2688 Methylococcus capsulatus str. Bath hypothetical protein YP_115092.1 2875560 D 243233 CDS YP_115093.1 53803212 3102951 complement(2875925..2877013) 1 NC_002977.6 identified by match to protein family HMM PF00665; match to protein family HMM PF01527; match to protein family HMM TIGR01199; prophage LambdaMc01, ISMca4, transposase, OrfAB 2877013 3102951 MCA2689 Methylococcus capsulatus str. Bath prophage LambdaMc01, ISMca4, transposase, OrfAB YP_115093.1 2875925 R 243233 CDS YP_115094.1 53803211 3103764 complement(2877665..2878183) 1 NC_002977.6 identified by similarity to SP:P02339; match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein 2878183 ssb 3103764 ssb Methylococcus capsulatus str. Bath single-strand binding protein YP_115094.1 2877665 R 243233 CDS YP_115095.1 53803210 3104118 complement(2878218..2879582) 1 NC_002977.6 identified by similarity to SP:P77726; match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator family transporter 2879582 3104118 MCA2691 Methylococcus capsulatus str. Bath major facilitator family transporter YP_115095.1 2878218 R 243233 CDS YP_115096.1 53803209 3103926 complement(2879702..2880649) 1 NC_002977.6 identified by similarity to SP:P76146; match to protein family HMM PF05249; hypothetical protein 2880649 3103926 MCA2692 Methylococcus capsulatus str. Bath hypothetical protein YP_115096.1 2879702 R 243233 CDS YP_115097.1 53803208 3103439 complement(2880646..2881038) 1 NC_002977.6 hypothetical protein 2881038 3103439 MCA2693 Methylococcus capsulatus str. Bath hypothetical protein YP_115097.1 2880646 R 243233 CDS YP_115098.1 53803207 3103741 2881050..2883878 1 NC_002977.6 identified by similarity to SP:P07671; match to protein family HMM PF00005; match to protein family HMM TIGR00630; excinuclease ABC subunit A 2883878 uvrA 3103741 uvrA Methylococcus capsulatus str. Bath excinuclease ABC subunit A YP_115098.1 2881050 D 243233 CDS YP_115099.1 53803199 3104437 2883968..2884141 1 NC_002977.6 hypothetical protein 2884141 3104437 MCA2695 Methylococcus capsulatus str. Bath hypothetical protein YP_115099.1 2883968 D 243233 CDS YP_115100.1 53803198 3103822 complement(2885108..2885278) 1 NC_002977.6 hypothetical protein 2885278 3103822 MCA2697 Methylococcus capsulatus str. Bath hypothetical protein YP_115100.1 2885108 R 243233 CDS YP_115101.1 53803197 3103456 2885269..2885562 1 NC_002977.6 identified by similarity to GP:19916392; match to protein family HMM TIGR02230; hypothetical protein 2885562 3103456 MCA2698 Methylococcus capsulatus str. Bath hypothetical protein YP_115101.1 2885269 D 243233 CDS YP_115102.1 53803196 3103463 2885569..2886255 1 NC_002977.6 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 2886255 atpB-2 3103463 atpB-2 Methylococcus capsulatus str. Bath ATP synthase F0F1 subunit A YP_115102.1 2885569 D 243233 CDS YP_115103.1 53803195 3104592 2886252..2886518 1 NC_002977.6 identified by similarity to SP:Q05366; match to protein family HMM PF00137; match to protein family HMM TIGR01260; ATP synthase F0 subunit C 2886518 atpE-2 3104592 atpE-2 Methylococcus capsulatus str. Bath ATP synthase F0 subunit C YP_115103.1 2886252 D 243233 CDS YP_115104.1 53803194 3103742 2886521..2887282 1 NC_002977.6 identified by match to protein family HMM PF00430; ATP synthase F1 subunit delta 2887282 3103742 MCA2701 Methylococcus capsulatus str. Bath ATP synthase F1 subunit delta YP_115104.1 2886521 D 243233 CDS YP_115105.1 53803193 3102763 complement(2887788..2888684) 1 NC_002977.6 identified by match to protein family HMM PF00089; serine protease 2888684 3102763 MCA2703 Methylococcus capsulatus str. Bath serine protease YP_115105.1 2887788 R 243233 CDS YP_115106.1 53803184 3104402 complement(2888751..2890445) 1 NC_002977.6 identified by match to protein family HMM PF00082; serine protease 2890445 3104402 MCA2704 Methylococcus capsulatus str. Bath serine protease YP_115106.1 2888751 R 243233 CDS YP_115107.1 53803183 3103481 2890813..2891877 1 NC_002977.6 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 2891877 3103481 MCA2706 Methylococcus capsulatus str. Bath AraC family transcriptional regulator YP_115107.1 2890813 D 243233 CDS YP_115108.1 53803182 3104545 2891837..2893348 1 NC_002977.6 produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 2893348 atpA-2 3104545 atpA-2 Methylococcus capsulatus str. Bath ATP synthase F0F1 subunit alpha YP_115108.1 2891837 D 243233 CDS YP_115109.1 53803181 3103785 2893345..2894172 1 NC_002977.6 identified by match to protein family HMM PF00231; ATP synthase F1 subunit gamma 2894172 atpG-2 3103785 atpG-2 Methylococcus capsulatus str. Bath ATP synthase F1 subunit gamma YP_115109.1 2893345 D 243233 CDS YP_115110.1 53803180 3103112 2894347..2895435 1 NC_002977.6 identified by similarity to OMNI:NTL01SMA00234; match to protein family HMM PF01594; hypothetical protein 2895435 3103112 MCA2709 Methylococcus capsulatus str. Bath hypothetical protein YP_115110.1 2894347 D 243233 CDS YP_115111.1 53803179 3103797 2895662..2897536 1 NC_002977.6 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 2897536 thiC 3103797 thiC Methylococcus capsulatus str. Bath thiamine biosynthesis protein ThiC YP_115111.1 2895662 D 243233 CDS YP_115112.1 53803178 3103790 2897545..2899200 1 NC_002977.6 identified by similarity to SP:P77901; match to protein family HMM PF00067; cytochrome P450 51 2899200 cyp51 3103790 cyp51 Methylococcus capsulatus str. Bath cytochrome P450 51 YP_115112.1 2897545 D 243233 CDS YP_115113.1 53803177 3103457 2899247..2899915 1 NC_002977.6 identified by similarity to OMNI:NTL01SMB00554; hypothetical protein 2899915 3103457 MCA2712 Methylococcus capsulatus str. Bath hypothetical protein YP_115113.1 2899247 D 243233 CDS YP_115114.1 53803168 3104397 2899912..2900961 1 NC_002977.6 identified by similarity to SP:P24173; match to protein family HMM PF01075; lipopolysaccharide heptosyltransferase-1 2900961 3104397 MCA2713 Methylococcus capsulatus str. Bath lipopolysaccharide heptosyltransferase-1 YP_115114.1 2899912 D 243233 CDS YP_115115.1 53803167 3104395 complement(2900966..2901841) 1 NC_002977.6 identified by similarity to GP:17427985; hypothetical protein 2901841 3104395 MCA2714 Methylococcus capsulatus str. Bath hypothetical protein YP_115115.1 2900966 R 243233 CDS YP_115116.1 53803166 3104213 complement(2901892..2902977) 1 NC_002977.6 identified by match to protein family HMM PF01266; oxidoreductase, FAD-binding 2902977 3104213 MCA2715 Methylococcus capsulatus str. Bath oxidoreductase, FAD-binding YP_115116.1 2901892 R 243233 CDS YP_115117.1 53803165 3104243 complement(2903019..2905997) 1 NC_002977.6 hypothetical protein 2905997 3104243 MCA2716 Methylococcus capsulatus str. Bath hypothetical protein YP_115117.1 2903019 R 243233 CDS YP_115118.1 53803164 3104157 2905984..2906391 1 NC_002977.6 hypothetical protein 2906391 3104157 MCA2717 Methylococcus capsulatus str. Bath hypothetical protein YP_115118.1 2905984 D 243233 CDS YP_115119.1 53803163 3104474 2906568..2907737 1 NC_002977.6 identified by similarity to GP:1785478; hypothetical protein 2907737 3104474 MCA2718 Methylococcus capsulatus str. Bath hypothetical protein YP_115119.1 2906568 D 243233 CDS YP_115120.1 53803162 3104532 2907734..2908831 1 NC_002977.6 identified by similarity to SP:P37973; match to protein family HMM TIGR01730; heavy metal efflux system protein 2908831 3104532 MCA2719 Methylococcus capsulatus str. Bath heavy metal efflux system protein YP_115120.1 2907734 D 243233 CDS YP_115121.1 53803161 3103284 2908828..2911878 1 NC_002977.6 identified by similarity to SP:P94177; match to protein family HMM TIGR00914; CzcA family heavy metal efflux protein 2911878 3103284 MCA2720 Methylococcus capsulatus str. Bath CzcA family heavy metal efflux protein YP_115121.1 2908828 D 243233 CDS YP_115124.1 53803150 3104287 2917848..2919680 1 NC_002977.6 identified by similarity to SP:P22317; match to protein family HMM PF01257; match to protein family HMM PF01512; NAD-reducing hydrogenase subunit alpha 2919680 3104287 MCA2724 Methylococcus capsulatus str. Bath NAD-reducing hydrogenase subunit alpha YP_115124.1 2917848 D 243233 CDS YP_115125.1 53803149 3103866 2919697..2920428 1 NC_002977.6 identified by similarity to SP:P22318; match to protein family HMM PF00111; NAD-reducing hydrogenase subunit gamma 2920428 3103866 MCA2725 Methylococcus capsulatus str. Bath NAD-reducing hydrogenase subunit gamma YP_115125.1 2919697 D 243233 CDS YP_115126.1 53803148 3103871 2920421..2920963 1 NC_002977.6 identified by similarity to SP:P22319; match to protein family HMM PF01058; NAD-reducing hydrogenase subunit delta 2920963 3103871 MCA2726 Methylococcus capsulatus str. Bath NAD-reducing hydrogenase subunit delta YP_115126.1 2920421 D 243233 CDS YP_115127.1 53803147 3103979 2921026..2921814 1 NC_002977.6 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 2921814 lgt 3103979 lgt Methylococcus capsulatus str. Bath prolipoprotein diacylglyceryl transferase YP_115127.1 2921026 D 243233 CDS YP_115128.1 53803146 3103768 2921815..2922597 1 NC_002977.6 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 2922597 thyA 3103768 thyA Methylococcus capsulatus str. Bath thymidylate synthase YP_115128.1 2921815 D 243233 CDS YP_115129.1 53803145 3103505 2922594..2923112 1 NC_002977.6 identified by similarity to SP:P11045; match to protein family HMM PF00186; dihydrofolate reductase 2923112 folA 3103505 folA Methylococcus capsulatus str. Bath dihydrofolate reductase YP_115129.1 2922594 D 243233 CDS YP_115130.1 53803144 3104376 complement(2923067..2923570) 1 NC_002977.6 identified by similarity to SP:P30747; match to protein family HMM PF01967; match to protein family HMM TIGR00581; molybdenum cofactor biosynthesis protein C 2923570 moaC 3104376 moaC Methylococcus capsulatus str. Bath molybdenum cofactor biosynthesis protein C YP_115130.1 2923067 R 243233 CDS YP_115131.1 53803143 3104057 2923636..2924130 1 NC_002977.6 identified by match to protein family HMM PF01613; flavin reductase-like domain-containing protein 2924130 3104057 MCA2731 Methylococcus capsulatus str. Bath flavin reductase-like domain-containing protein YP_115131.1 2923636 D 243233 CDS YP_115132.1 53803142 3104288 2924120..2925073 1 NC_002977.6 identified by similarity to GP:19915032; hypothetical protein 2925073 3104288 MCA2732 Methylococcus capsulatus str. Bath hypothetical protein YP_115132.1 2924120 D 243233 CDS YP_115133.1 53803141 3103885 2925060..2925773 1 NC_002977.6 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD-superfamily hydrolase 2925773 3103885 MCA2733 Methylococcus capsulatus str. Bath HAD-superfamily hydrolase YP_115133.1 2925060 D 243233 CDS YP_115134.1 53803140 3104396 2925817..2926116 1 NC_002977.6 hypothetical protein 2926116 3104396 MCA2734 Methylococcus capsulatus str. Bath hypothetical protein YP_115134.1 2925817 D 243233 CDS YP_115135.1 53803139 3103388 2926250..2927731 1 NC_002977.6 transporter 2927731 3103388 MCA2735 Methylococcus capsulatus str. Bath transporter YP_115135.1 2926250 D 243233 CDS YP_115136.1 53803138 3104204 complement(2927956..2928921) 1 NC_002977.6 member of metallo-beta-lactamase; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 2928921 3104204 MCA2736 Methylococcus capsulatus str. Bath ribonuclease Z YP_115136.1 2927956 R 243233 CDS YP_115137.1 53803129 3104280 complement(2929052..2929528) 1 NC_002977.6 hypothetical protein 2929528 3104280 MCA2737 Methylococcus capsulatus str. Bath hypothetical protein YP_115137.1 2929052 R 243233 CDS YP_115138.1 53803128 3103498 complement(2929677..2930846) 1 NC_002977.6 identified by similarity to GP:6899861; match to protein family HMM PF00215; match to protein family HMM PF01380; hexulose-6-phosphate synthase/SIS domain-containing protein 2930846 3103498 MCA2738 Methylococcus capsulatus str. Bath hexulose-6-phosphate synthase/SIS domain-containing protein YP_115138.1 2929677 R 243233 CDS YP_115139.1 53805184 3102850 complement(2930977..2932005) 1 NC_002977.6 hypothetical protein 2932005 3102850 MCA2739 Methylococcus capsulatus str. Bath hypothetical protein YP_115139.1 2930977 R 243233 CDS YP_115140.1 53803127 3102862 complement(2932010..2932651) 1 NC_002977.6 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 2932651 pyrE 3102862 pyrE Methylococcus capsulatus str. Bath orotate phosphoribosyltransferase YP_115140.1 2932010 R 243233 CDS YP_115141.1 53803126 3102886 complement(2932675..2933718) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA03070; hypothetical protein 2933718 3102886 MCA2741 Methylococcus capsulatus str. Bath hypothetical protein YP_115141.1 2932675 R 243233 CDS YP_115142.1 53803125 3103927 2933824..2934405 1 NC_002977.6 identified by similarity to OMNI:NTL03PA05245; match to protein family HMM PF00597; DedA family protein 2934405 3103927 MCA2742 Methylococcus capsulatus str. Bath DedA family protein YP_115142.1 2933824 D 243233 CDS YP_115143.1 53803124 3104087 2934677..2936098 1 NC_002977.6 type III RuBisCO; involved in carbon fixation; ribulose bisophosphate carboxylase 2936098 rbcL 3104087 rbcL Methylococcus capsulatus str. Bath ribulose bisophosphate carboxylase YP_115143.1 2934677 D 243233 CDS YP_115144.1 53803123 3104381 2936124..2936480 1 NC_002977.6 identified by similarity to GP:17646562; match to protein family HMM PF00101; ribulose bisphosphate carboxylase, small subunit 2936480 cbbS 3104381 cbbS Methylococcus capsulatus str. Bath ribulose bisphosphate carboxylase, small subunit YP_115144.1 2936124 D 243233 CDS YP_115145.1 53803114 3104117 2936598..2937398 1 NC_002977.6 identified by similarity to GP:4105515; cbbQ protein 2937398 cbbQ 3104117 cbbQ Methylococcus capsulatus str. Bath cbbQ protein YP_115145.1 2936598 D 243233 CDS YP_115146.1 53803113 3104188 2937676..2939691 1 NC_002977.6 identified by match to protein family HMM PF00553; cellulose-binding domain-containing protein 2939691 3104188 MCA2747 Methylococcus capsulatus str. Bath cellulose-binding domain-containing protein YP_115146.1 2937676 D 243233 CDS YP_115147.1 53803112 3102921 2939713..2939910 1 NC_002977.6 hypothetical protein 2939910 3102921 MCA2748 Methylococcus capsulatus str. Bath hypothetical protein YP_115147.1 2939713 D 243233 CDS YP_115148.1 53803111 3104382 2940093..2941724 1 NC_002977.6 identified by match to protein family HMM PF00672; match to protein family HMM PF07228; HAMP domain-containing protein 2941724 3104382 MCA2750 Methylococcus capsulatus str. Bath HAMP domain-containing protein YP_115148.1 2940093 D 243233 CDS YP_115149.1 53803110 3104418 2941848..2943773 1 NC_002977.6 identified by match to protein family HMM PF00593; TonB domain-containing protein 2943773 3104418 MCA2751 Methylococcus capsulatus str. Bath TonB domain-containing protein YP_115149.1 2941848 D 243233 CDS YP_115150.1 53803109 3104588 2943839..2944612 1 NC_002977.6 hypothetical protein 2944612 3104588 MCA2752 Methylococcus capsulatus str. Bath hypothetical protein YP_115150.1 2943839 D 243233 CDS YP_115151.1 53803108 3103789 2944780..2945562 1 NC_002977.6 hypothetical protein 2945562 3103789 MCA2753 Methylococcus capsulatus str. Bath hypothetical protein YP_115151.1 2944780 D 243233 CDS YP_115152.1 53803107 3103996 2945784..2948120 1 NC_002977.6 identified by similarity to GP:4433775; match to protein family HMM PF00092; cbbO protein 2948120 cbbO 3103996 cbbO Methylococcus capsulatus str. Bath cbbO protein YP_115152.1 2945784 D 243233 CDS YP_115153.1 53803106 3102961 2948491..2949876 1 NC_002977.6 identified by similarity to SP:Q50695; hypothetical protein 2949876 3102961 MCA2756 Methylococcus capsulatus str. Bath hypothetical protein YP_115153.1 2948491 D 243233 CDS YP_115154.1 53803096 3104496 complement(2949655..2950509) 1 NC_002977.6 identified by match to protein family HMM PF01758; bile acid transporter family protein 2950509 3104496 MCA2757 Methylococcus capsulatus str. Bath bile acid transporter family protein YP_115154.1 2949655 R 243233 CDS YP_115155.1 53803095 3104056 2950938..2953643 1 NC_002977.6 hypothetical protein 2953643 3104056 MCA2758 Methylococcus capsulatus str. Bath hypothetical protein YP_115155.1 2950938 D 243233 CDS YP_115156.1 53803104 3102677 2953703..2954281 1 NC_002977.6 hypothetical protein 2954281 3102677 MCA2759 Methylococcus capsulatus str. Bath hypothetical protein YP_115156.1 2953703 D 243233 CDS YP_115157.1 53803103 3103270 complement(2954370..2955719) 1 NC_002977.6 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 2955719 3103270 MCA2760 Methylococcus capsulatus str. Bath nicotinate phosphoribosyltransferase YP_115157.1 2954370 R 243233 CDS YP_115158.1 53803102 3104483 complement(2955716..2956312) 1 NC_002977.6 identified by similarity to SP:P21369; match to protein family HMM PF00857; pyrazinamidase/nicotinamidase 2956312 3104483 MCA2761 Methylococcus capsulatus str. Bath pyrazinamidase/nicotinamidase YP_115158.1 2955716 R 243233 CDS YP_115159.1 53803101 3103766 2956430..2956690 1 NC_002977.6 hypothetical protein 2956690 3103766 MCA2762 Methylococcus capsulatus str. Bath hypothetical protein YP_115159.1 2956430 D 243233 CDS YP_115160.1 53803100 3104323 complement(2956708..2957481) 1 NC_002977.6 lipoprotein 2957481 3104323 MCA2763 Methylococcus capsulatus str. Bath lipoprotein YP_115160.1 2956708 R 243233 CDS YP_115161.1 53803099 3103409 complement(2957576..2957944) 1 NC_002977.6 lipoprotein 2957944 3103409 MCA2764 Methylococcus capsulatus str. Bath lipoprotein YP_115161.1 2957576 R 243233 CDS YP_115162.1 53803098 3104457 complement(2958055..2958708) 1 NC_002977.6 hypothetical protein 2958708 3104457 MCA2765 Methylococcus capsulatus str. Bath hypothetical protein YP_115162.1 2958055 R 243233 CDS YP_115163.1 53803097 3102872 complement(2958881..2959315) 1 NC_002977.6 identified by similarity to OMNI:NTL01SS01176; match to protein family HMM PF01724; hypothetical protein 2959315 3102872 MCA2766 Methylococcus capsulatus str. Bath hypothetical protein YP_115163.1 2958881 R 243233 CDS YP_115164.1 53803089 3104533 complement(2959374..2960771) 1 NC_002977.6 identified by similarity to SP:P07002; match to protein family HMM PF02233; NAD(P) transhydrogenase subunit beta 2960771 pntB 3104533 pntB Methylococcus capsulatus str. Bath NAD(P) transhydrogenase subunit beta YP_115164.1 2959374 R 243233 CDS YP_115165.1 53803088 3103543 complement(2960790..2962328) 1 NC_002977.6 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 2962328 pntA 3103543 pntA Methylococcus capsulatus str. Bath NAD(P) transhydrogenase subunit alpha YP_115165.1 2960790 R 243233 CDS YP_115166.1 53803087 3102948 complement(2962532..2963737) 1 NC_002977.6 identified by similarity to SP:P25534; match to protein family HMM PF01360; match to protein family HMM TIGR01984; match to protein family HMM TIGR01988; 2-octaprenyl-6-methoxyphenol hydroxylase 2963737 ubiH 3102948 ubiH Methylococcus capsulatus str. Bath 2-octaprenyl-6-methoxyphenol hydroxylase YP_115166.1 2962532 R 243233 CDS YP_115167.1 53803086 3102867 complement(2963734..2965044) 1 NC_002977.6 identified by similarity to SP:P15034; match to protein family HMM PF00557; match to protein family HMM PF05195; xaa-pro aminopeptidase 2965044 pepP 3102867 pepP Methylococcus capsulatus str. Bath xaa-pro aminopeptidase YP_115167.1 2963734 R 243233 CDS YP_115168.1 53803085 3103189 complement(2965052..2965588) 1 NC_002977.6 the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein 2965588 3103189 MCA2771 Methylococcus capsulatus str. Bath hypothetical protein YP_115168.1 2965052 R 243233 CDS YP_115169.1 53803084 3102934 2965717..2966010 1 NC_002977.6 identified by similarity to GP:9107127; match to protein family HMM PF05164; hypothetical protein 2966010 3102934 MCA2772 Methylococcus capsulatus str. Bath hypothetical protein YP_115169.1 2965717 D 243233 CDS YP_115170.1 53803083 3104263 2966224..2966889 1 NC_002977.6 identified by match to protein family HMM PF01812; 5-formyltetrahydrofolate cyclo-ligase 2966889 3104263 MCA2773 Methylococcus capsulatus str. Bath 5-formyltetrahydrofolate cyclo-ligase YP_115170.1 2966224 D 243233 CDS YP_115171.1 53803074 3104359 2966978..2967628 1 NC_002977.6 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family transcriptional regulator 2967628 3104359 MCA2774 Methylococcus capsulatus str. Bath LuxR family transcriptional regulator YP_115171.1 2966978 D 243233 CDS YP_115172.1 53803073 3102879 complement(2967920..2969062) 1 NC_002977.6 identified by match to protein family HMM PF00070; pyridine nucleotide-disulfide oxidoreductase 2969062 3102879 MCA2776 Methylococcus capsulatus str. Bath pyridine nucleotide-disulfide oxidoreductase YP_115172.1 2967920 R 243233 CDS YP_115173.1 53803072 3103731 complement(2970030..2970536) 1 NC_002977.6 identified by similarity to GP:17427348; hypothetical protein 2970536 3103731 MCA2777 Methylococcus capsulatus str. Bath hypothetical protein YP_115173.1 2970030 R 243233 CDS YP_115174.1 53803071 3104358 complement(2970552..2970911) 1 NC_002977.6 identified by similarity to GP:11193064; formaldehyde-activating domain-containing protein 2970911 3104358 MCA2778 Methylococcus capsulatus str. Bath formaldehyde-activating domain-containing protein YP_115174.1 2970552 R 243233 CDS YP_115175.1 53803070 3103990 2971142..2971474 1 NC_002977.6 identified by similarity to GP:12024949; match to protein family HMM PF00893; multidrug resistance protein 2971474 3103990 MCA2779 Methylococcus capsulatus str. Bath multidrug resistance protein YP_115175.1 2971142 D 243233 CDS YP_115176.1 53803069 3103902 complement(2971523..2971927) 1 NC_002977.6 ankyrin repeat-containing protein 2971927 3103902 MCA2780 Methylococcus capsulatus str. Bath ankyrin repeat-containing protein YP_115176.1 2971523 R 243233 CDS YP_115177.1 53803068 3103803 complement(2972017..2972919) 1 NC_002977.6 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 2972919 argB 3103803 argB Methylococcus capsulatus str. Bath acetylglutamate kinase YP_115177.1 2972017 R 243233 CDS YP_115178.1 53803060 3103315 complement(2972945..2974336) 1 NC_002977.6 identified by similarity to GP:150994; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphoglucomutase/phosphomannomutase 2974336 3103315 MCA2782 Methylococcus capsulatus str. Bath phosphoglucomutase/phosphomannomutase YP_115178.1 2972945 R 243233 CDS YP_115179.1 53803059 3103113 complement(2975353..2975808) 1 NC_002977.6 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 2975808 dut 3103113 dut Methylococcus capsulatus str. Bath deoxyuridine 5'-triphosphate nucleotidohydrolase YP_115179.1 2975353 R 243233 CDS YP_115180.1 53803058 3104863 complement(2975780..2977042) 1 NC_002977.6 identified by similarity to SP:P24285; match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 2977042 coaBC 3104863 coaBC Methylococcus capsulatus str. Bath phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_115180.1 2975780 R 243233 CDS YP_115181.1 53803057 3103828 2977785..2978261 1 NC_002977.6 identified by match to protein family HMM PF02810; SecC motif-containing protein 2978261 3103828 MCA2786 Methylococcus capsulatus str. Bath SecC motif-containing protein YP_115181.1 2977785 D 243233 CDS YP_115182.1 53803056 3102944 complement(2978374..2979591) 1 NC_002977.6 hypothetical protein 2979591 3102944 MCA2787 Methylococcus capsulatus str. Bath hypothetical protein YP_115182.1 2978374 R 243233 CDS YP_115183.1 53803055 3103104 complement(2979599..2980597) 1 NC_002977.6 identified by similarity to GP:17132042; match to protein family HMM PF00107; alcohol dehydrogenase 2980597 3103104 MCA2788 Methylococcus capsulatus str. Bath alcohol dehydrogenase YP_115183.1 2979599 R 243233 CDS YP_115184.1 53803047 3104000 complement(2980594..2981139) 1 NC_002977.6 identified by match to protein family HMM PF00877; NLP/P60 family protein 2981139 3104000 MCA2789 Methylococcus capsulatus str. Bath NLP/P60 family protein YP_115184.1 2980594 R 243233 CDS YP_115185.1 53803046 3102743 complement(2981221..2982195) 1 NC_002977.6 identified by similarity to SP:P76291; match to protein family HMM TIGR00452; methyltransferase 2982195 3102743 MCA2790 Methylococcus capsulatus str. Bath methyltransferase YP_115185.1 2981221 R 243233 CDS YP_115186.1 53803045 3103617 2982291..2983205 1 NC_002977.6 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 2983205 hemF 3103617 hemF Methylococcus capsulatus str. Bath coproporphyrinogen III oxidase YP_115186.1 2982291 D 243233 CDS YP_115187.1 53803044 3104482 complement(2983200..2983853) 1 NC_002977.6 identified by similarity to OMNI:CC3693; match to protein family HMM PF05494; hypothetical protein 2983853 3104482 MCA2792 Methylococcus capsulatus str. Bath hypothetical protein YP_115187.1 2983200 R 243233 CDS YP_115188.1 53803043 3103143 2983971..2984975 1 NC_002977.6 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 2984975 hemB 3103143 hemB Methylococcus capsulatus str. Bath delta-aminolevulinic acid dehydratase YP_115188.1 2983971 D 243233 CDS YP_115189.1 53803042 3104558 2984972..2985811 1 NC_002977.6 identified by similarity to SP:P15770; match to protein family HMM PF01488; match to protein family HMM TIGR00507; shikimate 5-dehydrogenase 2985811 aroE 3104558 aroE Methylococcus capsulatus str. Bath shikimate 5-dehydrogenase YP_115189.1 2984972 D 243233 CDS YP_115190.1 53803041 3103477 complement(2985865..2986209) 1 NC_002977.6 identified by similarity to SP:P34884; match to protein family HMM PF01187; phenylpyruvate tautomerase 2986209 3103477 MCA2795 Methylococcus capsulatus str. Bath phenylpyruvate tautomerase YP_115190.1 2985865 R 243233 CDS YP_115191.1 53803040 3104019 complement(2986234..2990172) 1 NC_002977.6 identified by match to protein family HMM PF01839; hypothetical protein 2990172 3104019 MCA2796 Methylococcus capsulatus str. Bath hypothetical protein YP_115191.1 2986234 R 243233 CDS YP_115192.1 53803032 3104413 complement(2990516..2991058) 1 NC_002977.6 identified by similarity to SP:P45770; match to protein family HMM PF00132; carbonic anhydrase 2991058 3104413 MCA2797 Methylococcus capsulatus str. Bath carbonic anhydrase YP_115192.1 2990516 R 243233 CDS YP_115193.1 53803031 3102415 2991136..2991708 1 NC_002977.6 identified by similarity to OMNI:SP1284; match to protein family HMM PF04011; LemA family protein 2991708 3102415 MCA2798 Methylococcus capsulatus str. Bath LemA family protein YP_115193.1 2991136 D 243233 CDS YP_115194.1 53803030 3103779 2991708..2992634 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04369; hypothetical protein 2992634 3103779 MCA2799 Methylococcus capsulatus str. Bath hypothetical protein YP_115194.1 2991708 D 243233 CDS YP_115195.1 53803029 3103772 complement(2992788..2993105) 1 NC_002977.6 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 2993105 hisE 3103772 hisE Methylococcus capsulatus str. Bath phosphoribosyl-ATP pyrophosphatase YP_115195.1 2992788 R 243233 CDS YP_115196.1 53803028 3104226 complement(2993109..2993495) 1 NC_002977.6 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 2993495 hisI 3104226 hisI Methylococcus capsulatus str. Bath phosphoribosyl-AMP cyclohydrolase YP_115196.1 2993109 R 243233 CDS YP_115197.1 53803027 3103853 complement(2993492..2994256) 1 NC_002977.6 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2994256 hisF 3103853 hisF Methylococcus capsulatus str. Bath imidazole glycerol phosphate synthase subunit HisF YP_115197.1 2993492 R 243233 CDS YP_115198.1 53803026 3104244 complement(2994258..2994989) 1 NC_002977.6 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2994989 hisA 3104244 hisA Methylococcus capsulatus str. Bath 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_115198.1 2994258 R 243233 CDS YP_115199.1 53803017 3104486 complement(2995027..2995680) 1 NC_002977.6 identified by similarity to SP:P18785; match to protein family HMM PF00117; match to protein family HMM TIGR01855; amidotransferase 2995680 hisH 3104486 hisH Methylococcus capsulatus str. Bath amidotransferase YP_115199.1 2995027 R 243233 CDS YP_115200.1 53803016 3104419 complement(2995727..2996320) 1 NC_002977.6 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 2996320 hisB 3104419 hisB Methylococcus capsulatus str. Bath imidazoleglycerol-phosphate dehydratase YP_115200.1 2995727 R 243233 CDS YP_115201.1 53803015 3104198 complement(2996416..2998098) 1 NC_002977.6 identified by similarity to OMNI:NTL01BH0567; match to protein family HMM PF00282; pyridoxal-dependent decarboxylase domain-containing protein 2998098 3104198 MCA2806 Methylococcus capsulatus str. Bath pyridoxal-dependent decarboxylase domain-containing protein YP_115201.1 2996416 R 243233 CDS YP_115202.1 53803014 3104034 2998217..2999020 1 NC_002977.6 methyltransferase 2999020 3104034 MCA2807 Methylococcus capsulatus str. Bath methyltransferase YP_115202.1 2998217 D 243233 CDS YP_115203.1 53803013 3104316 2999115..2999552 1 NC_002977.6 identified by similarity to GP:17427115; match to protein family HMM PF00903; hypothetical protein 2999552 3104316 MCA2808 Methylococcus capsulatus str. Bath hypothetical protein YP_115203.1 2999115 D 243233 CDS YP_115204.1 53803012 3104504 2999895..3000308 1 NC_002977.6 hypothetical protein 3000308 3104504 MCA2809 Methylococcus capsulatus str. Bath hypothetical protein YP_115204.1 2999895 D 243233 CDS YP_115205.1 53803011 3104349 3000394..3001494 1 NC_002977.6 identified by match to protein family HMM PF01609; ISMca1, transposase 3001494 3104349 MCA2810 Methylococcus capsulatus str. Bath ISMca1, transposase YP_115205.1 3000394 D 243233 CDS YP_115206.1 53803010 3103436 complement(3001706..3001828) 1 NC_002977.6 hypothetical protein 3001828 3103436 MCA2811 Methylococcus capsulatus str. Bath hypothetical protein YP_115206.1 3001706 R 243233 CDS YP_115207.1 53803001 3104096 3001909..3002322 1 NC_002977.6 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 3002322 3104096 MCA2812 Methylococcus capsulatus str. Bath MarR family transcriptional regulator YP_115207.1 3001909 D 243233 CDS YP_115208.1 53803000 3104417 3002387..3003739 1 NC_002977.6 identified by match to protein family HMM PF00037; 4Fe-4S ferredoxin 3003739 3104417 MCA2813 Methylococcus capsulatus str. Bath 4Fe-4S ferredoxin YP_115208.1 3002387 D 243233 CDS YP_115209.1 53802999 3103946 3003879..3004991 1 NC_002977.6 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 3004991 3103946 MCA2814 Methylococcus capsulatus str. Bath RND family efflux transporter MFP subunit YP_115209.1 3003879 D 243233 CDS YP_115210.1 53802998 3102983 3004988..3008041 1 NC_002977.6 AcrB/AcrD/AcrF family protein 3008041 3102983 MCA2815 Methylococcus capsulatus str. Bath AcrB/AcrD/AcrF family protein YP_115210.1 3004988 D 243233 CDS YP_115211.1 53802997 3103810 3008109..3009557 1 NC_002977.6 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; outer membrane efflux family protein 3009557 3103810 MCA2816 Methylococcus capsulatus str. Bath outer membrane efflux family protein YP_115211.1 3008109 D 243233 CDS YP_115212.1 53802996 3104016 complement(3009943..3010230) 1 NC_002977.6 identified by match to protein family HMM PF03658; electron transport complex, H subunit 3010230 3104016 MCA2818 Methylococcus capsulatus str. Bath electron transport complex, H subunit YP_115212.1 3009943 R 243233 CDS YP_115213.1 53802995 3103949 complement(3010242..3010928) 1 NC_002977.6 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 3010928 3103949 MCA2819 Methylococcus capsulatus str. Bath electron transport complex protein RsxE YP_115213.1 3010242 R 243233 CDS YP_115214.1 53802994 3104353 complement(3010925..3011617) 1 NC_002977.6 identified by similarity to SP:P97054; match to protein family HMM PF04205; match to protein family HMM TIGR01947; RnfABCDGE type electron transport complex subunit G 3011617 3104353 MCA2820 Methylococcus capsulatus str. Bath RnfABCDGE type electron transport complex subunit G YP_115214.1 3010925 R 243233 CDS YP_115215.1 53802985 3104106 complement(3011626..3012705) 1 NC_002977.6 identified by similarity to GP:17865303; match to protein family HMM PF03116; match to protein family HMM TIGR01946; RnfABCDGE type electron transport complex subunit D 3012705 3104106 MCA2821 Methylococcus capsulatus str. Bath RnfABCDGE type electron transport complex subunit D YP_115215.1 3011626 R 243233 CDS YP_115216.1 53802984 3104313 complement(3012702..3014189) 1 NC_002977.6 identified by similarity to SP:P77611; match to protein family HMM PF00037; match to protein family HMM PF01512; match to protein family HMM TIGR01945; electron transport complex subunit C 3014189 3104313 MCA2822 Methylococcus capsulatus str. Bath electron transport complex subunit C YP_115216.1 3012702 R 243233 CDS YP_115217.1 53802983 3103323 complement(3014192..3014740) 1 NC_002977.6 identified by similarity to SP:Q07394; match to protein family HMM PF00037; match to protein family HMM PF04060; match to protein family HMM TIGR01944; electron transport complex subunit B 3014740 3103323 MCA2823 Methylococcus capsulatus str. Bath electron transport complex subunit B YP_115217.1 3014192 R 243233 CDS YP_115218.1 53802982 3104021 complement(3014763..3015344) 1 NC_002977.6 identified by similarity to SP:P76181; match to protein family HMM PF02508; match to protein family HMM TIGR01943; electron transport complex subunit A 3015344 3104021 MCA2824 Methylococcus capsulatus str. Bath electron transport complex subunit A YP_115218.1 3014763 R 243233 CDS YP_115219.1 53802981 3104509 3015634..3015828 1 NC_002977.6 identified by similarity to GP:15980856; match to protein family HMM PF04384; hypothetical protein 3015828 3104509 MCA2825 Methylococcus capsulatus str. Bath hypothetical protein YP_115219.1 3015634 D 243233 CDS YP_115220.1 53802980 3104498 3015952..3016455 1 NC_002977.6 hypothetical protein 3016455 3104498 MCA2826 Methylococcus capsulatus str. Bath hypothetical protein YP_115220.1 3015952 D 243233 CDS YP_115221.1 53802979 3104010 3016492..3017112 1 NC_002977.6 identified by match to protein family HMM PF00156; phosphoribosyl transferase domain-containing protein 3017112 3104010 MCA2827 Methylococcus capsulatus str. Bath phosphoribosyl transferase domain-containing protein YP_115221.1 3016492 D 243233 CDS YP_115222.1 53802978 3104069 3017504..3017776 1 NC_002977.6 identified by match to protein family HMM PF00313; cold shock domain-contain protein 3017776 3104069 MCA2828 Methylococcus capsulatus str. Bath cold shock domain-contain protein YP_115222.1 3017504 D 243233 CDS YP_115223.1 53802969 3104079 3017823..3018044 1 NC_002977.6 hypothetical protein 3018044 3104079 MCA2829 Methylococcus capsulatus str. Bath hypothetical protein YP_115223.1 3017823 D 243233 CDS YP_115224.1 53802968 3104503 complement(3018276..3019568) 1 NC_002977.6 identified by match to protein family HMM PF00324; amino acid permease 3019568 3104503 MCA2830 Methylococcus capsulatus str. Bath amino acid permease YP_115224.1 3018276 R 243233 CDS YP_115225.1 53802967 3103041 complement(3019589..3020287) 1 NC_002977.6 identified by similarity to SP:P24206; match to protein family HMM PF01135; match to protein family HMM TIGR00080; protein-L-isoaspartate O-methyltransferase 3020287 pcm-3 3103041 pcm-3 Methylococcus capsulatus str. Bath protein-L-isoaspartate O-methyltransferase YP_115225.1 3019589 R 243233 CDS YP_115226.1 53802966 3104187 complement(3020535..3023942) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04736; match to protein family HMM PF05359; hypothetical protein 3023942 3104187 MCA2832 Methylococcus capsulatus str. Bath hypothetical protein YP_115226.1 3020535 R 243233 CDS YP_115227.1 53802965 3104333 complement(3024026..3025018) 1 NC_002977.6 hypothetical protein 3025018 3104333 MCA2833 Methylococcus capsulatus str. Bath hypothetical protein YP_115227.1 3024026 R 243233 CDS YP_115228.1 53802964 3103294 complement(3025157..3026122) 1 NC_002977.6 identified by similarity to OMNI:NTL01MT00914; hypothetical protein 3026122 3103294 MCA2834 Methylococcus capsulatus str. Bath hypothetical protein YP_115228.1 3025157 R 243233 CDS YP_115229.1 53802963 3103944 complement(3026140..3026451) 1 NC_002977.6 hypothetical protein 3026451 3103944 MCA2835 Methylococcus capsulatus str. Bath hypothetical protein YP_115229.1 3026140 R 243233 CDS YP_115230.1 53803094 3103687 complement(3026483..3027604) 1 NC_002977.6 identified by similarity to SP:P09833; match to protein family HMM PF00005; match to protein family HMM PF03459; molybdenum ABC transporter ATP-binding protein 3027604 3103687 MCA2836 Methylococcus capsulatus str. Bath molybdenum ABC transporter ATP-binding protein YP_115230.1 3026483 R 243233 CDS YP_115231.1 53803093 3104093 complement(3027619..3029190) 1 NC_002977.6 amine oxidase 3029190 3104093 MCA2837 Methylococcus capsulatus str. Bath amine oxidase YP_115231.1 3027619 R 243233 CDS YP_115232.1 53803092 3104487 complement(3029398..3029958) 1 NC_002977.6 identified by match to protein family HMM PF01300; Sua5/YciO/YrdC/YwlC family protein 3029958 3104487 MCA2838 Methylococcus capsulatus str. Bath Sua5/YciO/YrdC/YwlC family protein YP_115232.1 3029398 R 243233 CDS YP_115233.1 53803091 3104042 complement(3029974..3032280) 1 NC_002977.6 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining; maintains net negative superhelicity; DNA topoisomerase I 3032280 topA 3104042 topA Methylococcus capsulatus str. Bath DNA topoisomerase I YP_115233.1 3029974 R 243233 CDS YP_115234.1 53803090 3103371 complement(3032357..3032824) 1 NC_002977.6 identified by similarity to OMNI:NTL01XF00924; match to protein family HMM PF04361; hypothetical protein 3032824 3103371 MCA2840 Methylococcus capsulatus str. Bath hypothetical protein YP_115234.1 3032357 R 243233 CDS YP_115235.1 53803082 3104724 complement(3032860..3033954) 1 NC_002977.6 identified by similarity to SP:P43862; match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA processing protein DprA 3033954 3104724 MCA2841 Methylococcus capsulatus str. Bath DNA processing protein DprA YP_115235.1 3032860 R 243233 CDS YP_115236.1 53803081 3102637 complement(3033965..3034990) 1 NC_002977.6 identified by similarity to GP:17427077; match to protein family HMM PF01476; LysM domain-containing protein 3034990 3102637 MCA2842 Methylococcus capsulatus str. Bath LysM domain-containing protein YP_115236.1 3033965 R 243233 CDS YP_115237.1 53803080 3104053 3035164..3035700 1 NC_002977.6 identified by similarity to SP:P27251; match to protein family HMM PF01327; match to protein family HMM TIGR00079; polypeptide deformylase 3035700 def-2 3104053 def-2 Methylococcus capsulatus str. Bath polypeptide deformylase YP_115237.1 3035164 D 243233 CDS YP_115238.1 53803079 3104223 3035787..3036713 1 NC_002977.6 identified by similarity to SP:P23882; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460; methionyl-tRNA formyltransferase 3036713 fmt 3104223 fmt Methylococcus capsulatus str. Bath methionyl-tRNA formyltransferase YP_115238.1 3035787 D 243233 CDS YP_115239.1 53803078 3104289 3036710..3038005 1 NC_002977.6 identified by similarity to SP:P36929; match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563; sun protein 3038005 sun 3104289 sun Methylococcus capsulatus str. Bath sun protein YP_115239.1 3036710 D 243233 CDS YP_115240.1 53803077 3103027 3038002..3038559 1 NC_002977.6 identified by similarity to OMNI:NTL01NM00155; hypothetical protein 3038559 3103027 MCA2846 Methylococcus capsulatus str. Bath hypothetical protein YP_115240.1 3038002 D 243233 CDS YP_115241.1 53803076 3104522 3038541..3040745 1 NC_002977.6 identified by similarity to SP:Q04850; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229; nitrogen regulation protein NtrY 3040745 3104522 MCA2847 Methylococcus capsulatus str. Bath nitrogen regulation protein NtrY YP_115241.1 3038541 D 243233 CDS YP_115242.1 53803075 3103345 3040742..3042109 1 NC_002977.6 identified by similarity to SP:Q04849; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199; nitrogen regulation protein NtrX 3042109 3103345 MCA2848 Methylococcus capsulatus str. Bath nitrogen regulation protein NtrX YP_115242.1 3040742 D 243233 CDS YP_115243.1 53803067 3103987 3042109..3043482 1 NC_002977.6 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 3043482 trkA 3103987 trkA Methylococcus capsulatus str. Bath potassium transporter peripheral membrane protein YP_115243.1 3042109 D 243233 CDS YP_115244.1 53803066 3102728 3043485..3044072 1 NC_002977.6 identified by similarity to GP:17428157; hypothetical protein 3044072 3102728 MCA2850 Methylococcus capsulatus str. Bath hypothetical protein YP_115244.1 3043485 D 243233 CDS YP_115245.1 53803065 3103033 3044069..3044461 1 NC_002977.6 identified by similarity to GP:17427305; match to protein family HMM PF00581; rhodanese domain-containing protein 3044461 3103033 MCA2851 Methylococcus capsulatus str. Bath rhodanese domain-containing protein YP_115245.1 3044069 D 243233 CDS YP_115246.1 53803064 3104330 3044672..3046492 1 NC_002977.6 identified by similarity to GP:9857266; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA 3046492 typA 3104330 typA Methylococcus capsulatus str. Bath GTP-binding protein TypA YP_115246.1 3044672 D 243233 CDS YP_115247.1 53803063 3103835 complement(3046666..3047910) 1 NC_002977.6 identified by similarity to GP:1913913; match to protein family HMM PF04744; methane monooxygenase subunit B 3047910 pmoB2 3103835 pmoB2 Methylococcus capsulatus str. Bath methane monooxygenase subunit B YP_115247.1 3046666 R 243233 CDS YP_115248.1 53803062 3104571 complement(3048017..3048760) 1 NC_002977.6 identified by similarity to GP:1913912; match to protein family HMM PF02461; methane monooxygenase subunit A 3048760 pmoA2 3104571 pmoA2 Methylococcus capsulatus str. Bath methane monooxygenase subunit A YP_115248.1 3048017 R 243233 CDS YP_115249.1 53803061 3103232 complement(3048914..3049696) 1 NC_002977.6 identified by match to protein family HMM PF04896; ammonia monooxygenase 3049696 3103232 MCA2855 Methylococcus capsulatus str. Bath ammonia monooxygenase YP_115249.1 3048914 R 243233 CDS YP_115250.1 53803054 3103199 complement(3050056..3050868) 1 NC_002977.6 identified by similarity to SP:Q59579; match to protein family HMM PF01493; formylmethanofurane dehydrogenase subunit 3050868 3103199 MCA2857 Methylococcus capsulatus str. Bath formylmethanofurane dehydrogenase subunit YP_115250.1 3050056 R 243233 CDS YP_115251.1 53803053 3103082 complement(3050903..3051799) 1 NC_002977.6 catalyzes the transfer of a formyl group from formylmethanofuran to tetrahydromethanopterin tetrahydromethanopterin; formylmethanofuran--tetrahydromethanopterin formyltransferase 3051799 3103082 MCA2858 Methylococcus capsulatus str. Bath formylmethanofuran--tetrahydromethanopterin formyltransferase YP_115251.1 3050903 R 243233 CDS YP_115252.1 53803052 3104348 complement(3051796..3053463) 1 NC_002977.6 identified by similarity to GP:1890210; formylmethanofurane dehydrogenase subunit A 3053463 3104348 MCA2859 Methylococcus capsulatus str. Bath formylmethanofurane dehydrogenase subunit A YP_115252.1 3051796 R 243233 CDS YP_115253.1 53803051 3103928 complement(3053492..3054763) 1 NC_002977.6 identified by similarity to GP:1881465; formylmethanofuran dehydrogenase 3054763 3103928 MCA2860 Methylococcus capsulatus str. Bath formylmethanofuran dehydrogenase YP_115253.1 3053492 R 243233 CDS YP_115254.1 53803050 3104078 3054953..3055996 1 NC_002977.6 identified by match to protein family HMM PF00288; match to protein family HMM TIGR00144; GHMP family kinase 3055996 3104078 MCA2861 Methylococcus capsulatus str. Bath GHMP family kinase YP_115254.1 3054953 D 243233 CDS YP_115255.1 53803049 3103142 3056004..3057146 1 NC_002977.6 identified by similarity to GP:3237331; hypothetical protein 3057146 3103142 MCA2862 Methylococcus capsulatus str. Bath hypothetical protein YP_115255.1 3056004 D 243233 CDS YP_115256.1 53803048 3104346 3057182..3058177 1 NC_002977.6 catalyzes the reversible formation of methenyl-H(4)methanopterin from N(5)-formyl-H(4)methanopterin; N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase 3058177 3104346 MCA2863 Methylococcus capsulatus str. Bath N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase YP_115256.1 3057182 D 243233 CDS YP_115257.1 53803039 3102863 3058170..3059096 1 NC_002977.6 identified by similarity to SP:P17116; match to protein family HMM TIGR00768; RimK family alpha-L-glutamate ligase 3059096 3102863 MCA2864 Methylococcus capsulatus str. Bath RimK family alpha-L-glutamate ligase YP_115257.1 3058170 D 243233 CDS YP_115258.1 53803038 3103980 3059093..3059959 1 NC_002977.6 identified by similarity to GP:11193063; match to protein family HMM PF01874; ATP:dephospho-CoA triphosphoribosyl transferase 3059959 3103980 MCA2865 Methylococcus capsulatus str. Bath ATP:dephospho-CoA triphosphoribosyl transferase YP_115258.1 3059093 D 243233 CDS YP_115259.1 53803037 3104275 3060088..3060600 1 NC_002977.6 identified by similarity to GP:11193064; formaldehyde-activating protein 3060600 3104275 MCA2866 Methylococcus capsulatus str. Bath formaldehyde-activating protein YP_115259.1 3060088 D 243233 CDS YP_115260.1 53803036 3102994 complement(3060683..3061366) 1 NC_002977.6 identified by similarity to GP:11193065; match to protein family HMM PF00977; HisA/HisF family protein 3061366 3102994 MCA2867 Methylococcus capsulatus str. Bath HisA/HisF family protein YP_115260.1 3060683 R 243233 CDS YP_115261.1 53803035 3104516 3061409..3062401 1 NC_002977.6 identified by similarity to GP:2621925; match to protein family HMM PF02655; hypothetical protein 3062401 3104516 MCA2868 Methylococcus capsulatus str. Bath hypothetical protein YP_115261.1 3061409 D 243233 CDS YP_115262.1 53803034 3103341 3062391..3063452 1 NC_002977.6 S-layer protein 3063452 3103341 MCA2869 Methylococcus capsulatus str. Bath S-layer protein YP_115262.1 3062391 D 243233 CDS YP_115263.1 53803033 3102789 3063449..3064855 1 NC_002977.6 identified by similarity to SP:P12679; match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00553; para-aminobenzoate synthase, component I 3064855 pabB 3102789 pabB Methylococcus capsulatus str. Bath para-aminobenzoate synthase, component I YP_115263.1 3063449 D 243233 CDS YP_115264.1 53803025 3103827 3064842..3065435 1 NC_002977.6 identified by match to protein family HMM PF00696; amino acid kinase 3065435 3103827 MCA2871 Methylococcus capsulatus str. Bath amino acid kinase YP_115264.1 3064842 D 243233 CDS YP_115265.1 53803024 3104321 complement(3065450..3066799) 1 NC_002977.6 identified by match to protein family HMM PF01360; monooxygenase 3066799 3104321 MCA2872 Methylococcus capsulatus str. Bath monooxygenase YP_115265.1 3065450 R 243233 CDS YP_115266.1 53803023 3103501 complement(3066796..3068808) 1 NC_002977.6 identified by similarity to GP:1098635; match to protein family HMM PF00432; match to protein family HMM TIGR01787; squalene cyclase 3068808 3103501 MCA2873 Methylococcus capsulatus str. Bath squalene cyclase YP_115266.1 3066796 R 243233 CDS YP_115267.1 53803022 3104212 complement(3069017..3069151) 1 NC_002977.6 hypothetical protein 3069151 3104212 MCA2874 Methylococcus capsulatus str. Bath hypothetical protein YP_115267.1 3069017 R 243233 CDS YP_115268.1 53803021 3103879 3069160..3069429 1 NC_002977.6 hypothetical protein 3069429 3103879 MCA2875 Methylococcus capsulatus str. Bath hypothetical protein YP_115268.1 3069160 D 243233 CDS YP_115269.1 53803020 3103517 3069527..3070042 1 NC_002977.6 hypothetical protein 3070042 3103517 MCA2876 Methylococcus capsulatus str. Bath hypothetical protein YP_115269.1 3069527 D 243233 CDS YP_115270.1 53803019 3103040 3070039..3071244 1 NC_002977.6 identified by similarity to OMNI:NTL01BH0675; hypothetical protein 3071244 3103040 MCA2877 Methylococcus capsulatus str. Bath hypothetical protein YP_115270.1 3070039 D 243233 CDS YP_115271.1 53803018 3104099 3071351..3071866 1 NC_002977.6 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 3071866 fabA 3104099 fabA Methylococcus capsulatus str. Bath 3-hydroxydecanoyl-ACP dehydratase YP_115271.1 3071351 D 243233 CDS YP_115272.1 53803009 3103538 3071878..3073098 1 NC_002977.6 identified by similarity to SP:P14926; match to protein family HMM PF00109; match to protein family HMM PF02801; 3-oxoacyl-ACP synthase 3073098 fabB 3103538 fabB Methylococcus capsulatus str. Bath 3-oxoacyl-ACP synthase YP_115272.1 3071878 D 243233 CDS YP_115273.1 53803008 3104039 3073088..3073957 1 NC_002977.6 identified by similarity to GP:15980332; match to protein family HMM PF01171; hypothetical protein 3073957 3104039 MCA2880 Methylococcus capsulatus str. Bath hypothetical protein YP_115273.1 3073088 D 243233 CDS YP_115274.1 53803007 3104111 3073962..3074675 1 NC_002977.6 identified by similarity to OMNI:NTL01LM0636; hypothetical protein 3074675 3104111 MCA2881 Methylococcus capsulatus str. Bath hypothetical protein YP_115274.1 3073962 D 243233 CDS YP_115275.1 53803006 3104461 3075233..3075421 1 NC_002977.6 hypothetical protein 3075421 3104461 MCA2882 Methylococcus capsulatus str. Bath hypothetical protein YP_115275.1 3075233 D 243233 CDS YP_115276.1 53803005 3103896 3075529..3076017 1 NC_002977.6 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; match to protein family HMM TIGR02010; Rrf2 family protein 3076017 3103896 MCA2883 Methylococcus capsulatus str. Bath Rrf2 family protein YP_115276.1 3075529 D 243233 CDS YP_115277.1 53803004 3103932 3076014..3077135 1 NC_002977.6 identified by similarity to SP:Q43884; match to protein family HMM PF00266; cysteine desulfurase 3077135 3103932 MCA2884 Methylococcus capsulatus str. Bath cysteine desulfurase YP_115277.1 3076014 D 243233 CDS YP_115278.1 53803003 3103546 3077166..3077489 1 NC_002977.6 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; HesB/YadR/YfhF family protein 3077489 3103546 MCA2885 Methylococcus capsulatus str. Bath HesB/YadR/YfhF family protein YP_115278.1 3077166 D 243233 CDS YP_115279.1 53803002 3103951 3077636..3078067 1 NC_002977.6 identified by similarity to SP:Q59636; match to protein family HMM PF00334; nucleoside diphosphate kinase 3078067 ndk 3103951 ndk Methylococcus capsulatus str. Bath nucleoside diphosphate kinase YP_115279.1 3077636 D 243233 CDS YP_115280.1 53802993 3104120 3078042..3079142 1 NC_002977.6 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048; hypothetical protein 3079142 3104120 MCA2887 Methylococcus capsulatus str. Bath hypothetical protein YP_115280.1 3078042 D 243233 CDS YP_115281.1 53802992 3103697 3079145..3079912 1 NC_002977.6 identified by similarity to GP:1162960; match to protein family HMM PF00515; type IV pilus biogenesis protein PilF 3079912 3103697 MCA2888 Methylococcus capsulatus str. Bath type IV pilus biogenesis protein PilF YP_115281.1 3079145 D 243233 CDS YP_115282.1 53802991 3103527 3079946..3081214 1 NC_002977.6 identified by similarity to SP:P04804; match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442; histidyl-tRNA synthetase 3081214 hisS 3103527 hisS Methylococcus capsulatus str. Bath histidyl-tRNA synthetase YP_115282.1 3079946 D 243233 CDS YP_115283.1 53802990 3102975 3081228..3081863 1 NC_002977.6 identified by similarity to GP:9949974; hypothetical protein 3081863 3102975 MCA2890 Methylococcus capsulatus str. Bath hypothetical protein YP_115283.1 3081228 D 243233 CDS YP_115284.1 53802989 3103747 3081860..3083047 1 NC_002977.6 identified by similarity to OMNI:NTL03PA03800; match to protein family HMM PF01011; lipoprotein 3083047 3103747 MCA2891 Methylococcus capsulatus str. Bath lipoprotein YP_115284.1 3081860 D 243233 CDS YP_115285.1 53802988 3104264 3083050..3084441 1 NC_002977.6 identified by similarity to SP:P77254; match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00650; GTPase 3084441 3104264 MCA2892 Methylococcus capsulatus str. Bath GTPase YP_115285.1 3083050 D 243233 CDS YP_115286.1 53802987 3104123 3084515..3085096 1 NC_002977.6 identified by similarity to SP:P76181; match to protein family HMM PF02508; match to protein family HMM TIGR01943; Na(+)-translocating NADH-quinone reductase subunit E 3085096 3104123 MCA2893 Methylococcus capsulatus str. Bath Na(+)-translocating NADH-quinone reductase subunit E YP_115286.1 3084515 D 243233 CDS YP_115287.1 53802986 3103982 3085112..3085648 1 NC_002977.6 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 3085648 3103982 MCA2894 Methylococcus capsulatus str. Bath electron transport complex protein RnfB YP_115287.1 3085112 D 243233 CDS YP_115288.1 53802977 3104035 3085648..3087219 1 NC_002977.6 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 3087219 3104035 MCA2895 Methylococcus capsulatus str. Bath electron transport complex protein RnfC YP_115288.1 3085648 D 243233 CDS YP_115289.1 53802976 3104192 3087223..3088254 1 NC_002977.6 identified by similarity to SP:Q52715; match to protein family HMM PF03116; match to protein family HMM TIGR01946; RnfABCDGE type electron transport complex subunit D 3088254 3104192 MCA2896 Methylococcus capsulatus str. Bath RnfABCDGE type electron transport complex subunit D YP_115289.1 3087223 D 243233 CDS YP_115290.1 53802975 3103119 3088371..3089009 1 NC_002977.6 identified by similarity to SP:P97054; match to protein family HMM PF04205; match to protein family HMM TIGR01947; RnfABCDGE type electron transport complex subunit G 3089009 3103119 MCA2897 Methylococcus capsulatus str. Bath RnfABCDGE type electron transport complex subunit G YP_115290.1 3088371 D 243233 CDS YP_115291.1 53802974 3103967 3089006..3089707 1 NC_002977.6 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 3089707 3103967 MCA2898 Methylococcus capsulatus str. Bath electron transport complex protein RsxE YP_115291.1 3089006 D 243233 CDS YP_115292.1 53802973 3104239 3089704..3090345 1 NC_002977.6 identified by similarity to SP:P20625; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III 3090345 3104239 MCA2899 Methylococcus capsulatus str. Bath endonuclease III YP_115292.1 3089704 D 243233 CDS YP_115293.1 53802972 3103973 complement(3091049..3091846) 1 NC_002977.6 identified by match to protein family HMM PF01555; prophage MuMc02, DNA methyltransferase 3091846 3103973 MCA2900 Methylococcus capsulatus str. Bath prophage MuMc02, DNA methyltransferase YP_115293.1 3091049 R 243233 CDS YP_115294.1 53802971 3103963 complement(3092066..3092749) 1 NC_002977.6 hypothetical protein 3092749 3103963 MCA2901 Methylococcus capsulatus str. Bath hypothetical protein YP_115294.1 3092066 R 243233 CDS YP_115295.1 53802970 3104027 complement(3092749..3093702) 1 NC_002977.6 hypothetical protein 3093702 3104027 MCA2902 Methylococcus capsulatus str. Bath hypothetical protein YP_115295.1 3092749 R 243233 CDS YP_115296.1 53802961 3104351 complement(3093686..3093874) 1 NC_002977.6 hypothetical protein 3093874 3104351 MCA2903 Methylococcus capsulatus str. Bath hypothetical protein YP_115296.1 3093686 R 243233 CDS YP_115297.1 53802960 3103978 complement(3093885..3096056) 1 NC_002977.6 identified by similarity to OMNI:NTL01AT0449; hypothetical protein 3096056 3103978 MCA2904 Methylococcus capsulatus str. Bath hypothetical protein YP_115297.1 3093885 R 243233 CDS YP_115298.1 53802959 3104268 complement(3096072..3097382) 1 NC_002977.6 identified by similarity to GP:4586893; prophage MuMc02 tail fiber domain-containing protein 3097382 3104268 MCA2905 Methylococcus capsulatus str. Bath prophage MuMc02 tail fiber domain-containing protein YP_115298.1 3096072 R 243233 CDS YP_115299.1 53802958 3104341 complement(3097383..3097865) 1 NC_002977.6 hypothetical protein 3097865 3104341 MCA2906 Methylococcus capsulatus str. Bath hypothetical protein YP_115299.1 3097383 R 243233 CDS YP_115300.1 53802957 3104153 complement(3097862..3098995) 1 NC_002977.6 identified by similarity to GP:4586892; match to protein family HMM PF04865; prophage MuMc02, bacteriocin protein 3098995 3104153 MCA2907 Methylococcus capsulatus str. Bath prophage MuMc02, bacteriocin protein YP_115300.1 3097862 R 243233 CDS YP_115301.1 53802956 3104500 complement(3098992..3099378) 1 NC_002977.6 prophage MuMc02, baseplate assembly protein W 3099378 3104500 MCA2908 Methylococcus capsulatus str. Bath prophage MuMc02, baseplate assembly protein W YP_115301.1 3098992 R 243233 CDS YP_115302.1 53802955 3102883 complement(3099375..3100853) 1 NC_002977.6 hypothetical protein 3100853 3102883 MCA2909 Methylococcus capsulatus str. Bath hypothetical protein YP_115302.1 3099375 R 243233 CDS YP_115303.1 53802954 3104377 complement(3100853..3101449) 1 NC_002977.6 identified by match to protein family HMM PF04717; match to protein family HMM TIGR01644; prophage MuMc02, baseplate assembly protein V 3101449 3104377 MCA2910 Methylococcus capsulatus str. Bath prophage MuMc02, baseplate assembly protein V YP_115303.1 3100853 R 243233 CDS YP_115304.1 53802945 3103981 complement(3101469..3102512) 1 NC_002977.6 identified by similarity to OMNI:NTL01ST4206; prophage MuMc02, late control gene D protein 3102512 3103981 MCA2911 Methylococcus capsulatus str. Bath prophage MuMc02, late control gene D protein YP_115304.1 3101469 R 243233 CDS YP_115305.1 53802944 3104491 complement(3102509..3102754) 1 NC_002977.6 identified by similarity to OMNI:NTL01ST4207; match to protein family HMM PF05489; hypothetical protein 3102754 3104491 MCA2912 Methylococcus capsulatus str. Bath hypothetical protein YP_115305.1 3102509 R 243233 CDS YP_115306.1 53802962 3104184 complement(3102751..3103320) 1 NC_002977.6 identified by similarity to OMNI:NTL01ST4208; hypothetical protein 3103320 3104184 MCA2913 Methylococcus capsulatus str. Bath hypothetical protein YP_115306.1 3102751 R 243233 CDS YP_115307.1 53802953 3104506 complement(3103485..3106466) 1 NC_002977.6 identified by match to protein family HMM TIGR01760; prophage MuMc02, TP901 family tail tape measure protein 3106466 3104506 MCA2914 Methylococcus capsulatus str. Bath prophage MuMc02, TP901 family tail tape measure protein YP_115307.1 3103485 R 243233 CDS YP_115308.1 53802952 3103991 complement(3106837..3107142) 1 NC_002977.6 identified by similarity to GP:8698823; hypothetical protein 3107142 3103991 MCA2916 Methylococcus capsulatus str. Bath hypothetical protein YP_115308.1 3106837 R 243233 CDS YP_115309.1 53802951 3104343 complement(3107185..3107532) 1 NC_002977.6 identified by similarity to SP:P44181; hypothetical protein 3107532 3104343 MCA2917 Methylococcus capsulatus str. Bath hypothetical protein YP_115309.1 3107185 R 243233 CDS YP_115310.1 53802950 3104068 complement(3107534..3108055) 1 NC_002977.6 identified by match to protein family HMM PF04985; match to protein family HMM TIGR01611; prophage MuMc02, major tail tube protein 3108055 3104068 MCA2918 Methylococcus capsulatus str. Bath prophage MuMc02, major tail tube protein YP_115310.1 3107534 R 243233 CDS YP_115311.1 53802949 3103039 complement(3108349..3109806) 1 NC_002977.6 identified by match to protein family HMM PF04984; prophage MuMc02, tail sheath protein 3109806 3103039 MCA2919 Methylococcus capsulatus str. Bath prophage MuMc02, tail sheath protein YP_115311.1 3108349 R 243233 CDS YP_115312.1 53802948 3103548 complement(3109813..3110010) 1 NC_002977.6 identified by similarity to GP:16502713; hypothetical protein 3110010 3103548 MCA2920 Methylococcus capsulatus str. Bath hypothetical protein YP_115312.1 3109813 R 243233 CDS YP_115313.1 53802947 3104222 complement(3110007..3110543) 1 NC_002977.6 identified by similarity to GP:16502712; hypothetical protein 3110543 3104222 MCA2921 Methylococcus capsulatus str. Bath hypothetical protein YP_115313.1 3110007 R 243233 CDS YP_115314.1 53802946 3104476 complement(3110540..3110992) 1 NC_002977.6 identified by similarity to GP:16502711; hypothetical protein 3110992 3104476 MCA2922 Methylococcus capsulatus str. Bath hypothetical protein YP_115314.1 3110540 R 243233 CDS YP_115315.1 53802937 3104416 complement(3111002..3111991) 1 NC_002977.6 identified by similarity to GP:6723249; hypothetical protein 3111991 3104416 MCA2923 Methylococcus capsulatus str. Bath hypothetical protein YP_115315.1 3111002 R 243233 CDS YP_115316.1 53802936 3103668 complement(3112000..3112374) 1 NC_002977.6 identified by similarity to OMNI:NTL01RS0859; hypothetical protein 3112374 3103668 MCA2924 Methylococcus capsulatus str. Bath hypothetical protein YP_115316.1 3112000 R 243233 CDS YP_115317.1 53802935 3104128 complement(3112387..3113472) 1 NC_002977.6 identified by similarity to GP:16502708; hypothetical protein 3113472 3104128 MCA2925 Methylococcus capsulatus str. Bath hypothetical protein YP_115317.1 3112387 R 243233 CDS YP_115318.1 53802934 3104481 complement(3113769..3114242) 1 NC_002977.6 identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635; prophage MuMc02, virion morphogenesis protein 3114242 3104481 MCA2926 Methylococcus capsulatus str. Bath prophage MuMc02, virion morphogenesis protein YP_115318.1 3113769 R 243233 CDS YP_115319.1 53802933 3104385 complement(3114342..3116639) 1 NC_002977.6 includes an intein; identified by match to protein family HMM PF04233; match to protein family HMM TIGR01443; match to protein family HMM TIGR01641; prophage MuMc02, F protein 3116639 3104385 MCA2927 Methylococcus capsulatus str. Bath prophage MuMc02, F protein YP_115319.1 3114342 R 243233 CDS YP_115320.1 53802932 3104379 complement(3116636..3117397) 1 NC_002977.6 hypothetical protein 3117397 3104379 MCA2928 Methylococcus capsulatus str. Bath hypothetical protein YP_115320.1 3116636 R 243233 CDS YP_115321.1 53802931 3103174 complement(3117401..3117895) 1 NC_002977.6 hypothetical protein 3117895 3103174 MCA2929 Methylococcus capsulatus str. Bath hypothetical protein YP_115321.1 3117401 R 243233 CDS YP_115322.1 53802924 3103015 complement(3117895..3119295) 1 NC_002977.6 prophage MuMc02, head decoration protein 3119295 3103015 MCA2930 Methylococcus capsulatus str. Bath prophage MuMc02, head decoration protein YP_115322.1 3117895 R 243233 CDS YP_115323.1 53802923 3103868 complement(3119479..3119847) 1 NC_002977.6 hypothetical protein 3119847 3103868 MCA2931 Methylococcus capsulatus str. Bath hypothetical protein YP_115323.1 3119479 R 243233 CDS YP_115324.1 53802922 3103510 complement(3119840..3121330) 1 NC_002977.6 identified by similarity to GP:16502705; match to protein family HMM PF06074; hypothetical protein 3121330 3103510 MCA2932 Methylococcus capsulatus str. Bath hypothetical protein YP_115324.1 3119840 R 243233 CDS YP_115325.1 53802921 3104109 complement(3121327..3122658) 1 NC_002977.6 identified by similarity to OMNI:DRA0094; prophage MuMc02, terminase, ATPase subunit 3122658 3104109 MCA2933 Methylococcus capsulatus str. Bath prophage MuMc02, terminase, ATPase subunit YP_115325.1 3121327 R 243233 CDS YP_115326.1 53802920 3104274 complement(3122655..3123218) 1 NC_002977.6 identified by similarity to GP:16502703; hypothetical protein 3123218 3104274 MCA2934 Methylococcus capsulatus str. Bath hypothetical protein YP_115326.1 3122655 R 243233 CDS YP_115327.1 53802919 3103379 complement(3123218..3123514) 1 NC_002977.6 identified by similarity to SP:Q9T1W8; hypothetical protein 3123514 3103379 MCA2935 Methylococcus capsulatus str. Bath hypothetical protein YP_115327.1 3123218 R 243233 CDS YP_115328.1 53802918 3104009 complement(3123511..3123915) 1 NC_002977.6 hypothetical protein 3123915 3104009 MCA2936 Methylococcus capsulatus str. Bath hypothetical protein YP_115328.1 3123511 R 243233 CDS YP_115329.1 53802917 3103995 complement(3123887..3124162) 1 NC_002977.6 hypothetical protein 3124162 3103995 MCA2937 Methylococcus capsulatus str. Bath hypothetical protein YP_115329.1 3123887 R 243233 CDS YP_115330.1 53802909 3102752 complement(3124146..3124364) 1 NC_002977.6 hypothetical protein 3124364 3102752 MCA2938 Methylococcus capsulatus str. Bath hypothetical protein YP_115330.1 3124146 R 243233 CDS YP_115331.1 53802908 3103812 complement(3124364..3124657) 1 NC_002977.6 identified by similarity to GP:2315457; prophage MuMc02, lipoprotein 3124657 3103812 MCA2939 Methylococcus capsulatus str. Bath prophage MuMc02, lipoprotein YP_115331.1 3124364 R 243233 CDS YP_115332.1 53802907 3102956 complement(3124644..3125069) 1 NC_002977.6 identified by similarity to GP:5453372; prophage MuMc02, structural protein P5 3125069 3102956 MCA2940 Methylococcus capsulatus str. Bath prophage MuMc02, structural protein P5 YP_115332.1 3124644 R 243233 CDS YP_115333.1 53802906 3103362 complement(3125302..3125616) 1 NC_002977.6 hypothetical protein 3125616 3103362 MCA2941 Methylococcus capsulatus str. Bath hypothetical protein YP_115333.1 3125302 R 243233 CDS YP_115334.1 53802905 3104549 complement(3125852..3126502) 1 NC_002977.6 identified by match to protein family HMM PF00565; match to protein family HMM PF05901; prophage MuMc02, nuclease 3126502 3104549 MCA2942 Methylococcus capsulatus str. Bath prophage MuMc02, nuclease YP_115334.1 3125852 R 243233 CDS YP_115335.1 53802904 3104557 complement(3126502..3126852) 1 NC_002977.6 identified by similarity to SP:Q47588; prophage MuMc02, transcriptional regulator 3126852 3104557 MCA2943 Methylococcus capsulatus str. Bath prophage MuMc02, transcriptional regulator YP_115335.1 3126502 R 243233 CDS YP_115336.1 53802903 3104411 complement(3126845..3127453) 1 NC_002977.6 hypothetical protein 3127453 3104411 MCA2944 Methylococcus capsulatus str. Bath hypothetical protein YP_115336.1 3126845 R 243233 CDS YP_115337.1 53802902 3104407 complement(3127653..3128084) 1 NC_002977.6 identified by similarity to OMNI:NMB0985; hypothetical protein 3128084 3104407 MCA2946 Methylococcus capsulatus str. Bath hypothetical protein YP_115337.1 3127653 R 243233 CDS YP_115338.1 53802893 3103178 complement(3128090..3128377) 1 NC_002977.6 identified by similarity to SP:P02346; match to protein family HMM PF00216; prophage MuMc02, DNA-binding protein HU 3128377 hup 3103178 hup Methylococcus capsulatus str. Bath prophage MuMc02, DNA-binding protein HU YP_115338.1 3128090 R 243233 CDS YP_115339.1 53802892 3103185 complement(3128411..3128908) 1 NC_002977.6 identified by similarity to SP:P06023; match to protein family HMM PF07352; prophage MuMc02, host-nuclease inhibitor protein 3128908 gam 3103185 gam Methylococcus capsulatus str. Bath prophage MuMc02, host-nuclease inhibitor protein YP_115339.1 3128411 R 243233 CDS YP_115340.1 53802891 3103843 complement(3128917..3129078) 1 NC_002977.6 hypothetical protein 3129078 3103843 MCA2949 Methylococcus capsulatus str. Bath hypothetical protein YP_115340.1 3128917 R 243233 CDS YP_115341.1 53802890 3103814 complement(3129075..3129308) 1 NC_002977.6 hypothetical protein 3129308 3103814 MCA2950 Methylococcus capsulatus str. Bath hypothetical protein YP_115341.1 3129075 R 243233 CDS YP_115342.1 53802889 3103158 complement(3129305..3129640) 1 NC_002977.6 hypothetical protein 3129640 3103158 MCA2951 Methylococcus capsulatus str. Bath hypothetical protein YP_115342.1 3129305 R 243233 CDS YP_115343.1 53802888 3103695 complement(3129877..3130215) 1 NC_002977.6 hypothetical protein 3130215 3103695 MCA2952 Methylococcus capsulatus str. Bath hypothetical protein YP_115343.1 3129877 R 243233 CDS YP_115344.1 53802887 3103831 complement(3130208..3130795) 1 NC_002977.6 hypothetical protein 3130795 3103831 MCA2953 Methylococcus capsulatus str. Bath hypothetical protein YP_115344.1 3130208 R 243233 CDS YP_115345.1 53802886 3104314 complement(3130795..3131466) 1 NC_002977.6 identified by similarity to GP:974770; prophage MuMc02, transposition protein B 3131466 3104314 MCA2954 Methylococcus capsulatus str. Bath prophage MuMc02, transposition protein B YP_115345.1 3130795 R 243233 CDS YP_115346.1 53802877 3103824 complement(3131611..3133740) 1 NC_002977.6 identified by match to protein family HMM PF00665; prophage MuMc02, transposase A 3133740 3103824 MCA2955 Methylococcus capsulatus str. Bath prophage MuMc02, transposase A YP_115346.1 3131611 R 243233 CDS YP_115347.1 53802876 3103819 complement(3134333..3134524) 1 NC_002977.6 hypothetical protein 3134524 3103819 MCA2956 Methylococcus capsulatus str. Bath hypothetical protein YP_115347.1 3134333 R 243233 CDS YP_115348.1 53802875 3102891 complement(3134616..3135056) 1 NC_002977.6 hypothetical protein 3135056 3102891 MCA2957 Methylococcus capsulatus str. Bath hypothetical protein YP_115348.1 3134616 R 243233 CDS YP_115349.1 53802874 3104559 complement(3135157..3135489) 1 NC_002977.6 identified by similarity to OMNI:NMB1004; hypothetical protein 3135489 3104559 MCA2958 Methylococcus capsulatus str. Bath hypothetical protein YP_115349.1 3135157 R 243233 CDS YP_115350.1 53802873 3103575 3135799..3136380 1 NC_002977.6 identified by match to protein family HMM PF00717; prophage MuMc02, S24 family peptidase 3136380 3103575 MCA2959 Methylococcus capsulatus str. Bath prophage MuMc02, S24 family peptidase YP_115350.1 3135799 D 243233 CDS YP_115351.1 53802872 3103057 3136735..3137751 1 NC_002977.6 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 3137751 3103057 MCA2962 Methylococcus capsulatus str. Bath AraC family transcriptional regulator YP_115351.1 3136735 D 243233 CDS YP_115352.1 53802871 3104452 complement(3137867..3138559) 1 NC_002977.6 identified by similarity to SP:P48837; hypothetical protein 3138559 3104452 MCA2963 Methylococcus capsulatus str. Bath hypothetical protein YP_115352.1 3137867 R 243233 CDS YP_115353.1 53802870 3103821 complement(3138767..3139867) 1 NC_002977.6 identified by match to protein family HMM PF01609; ISMca1, transposase 3139867 3103821 MCA2964 Methylococcus capsulatus str. Bath ISMca1, transposase YP_115353.1 3138767 R 243233 CDS YP_115354.1 53802861 3104255 complement(3140074..3141096) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA01115; hypothetical protein 3141096 3104255 MCA2965 Methylococcus capsulatus str. Bath hypothetical protein YP_115354.1 3140074 R 243233 CDS YP_115355.1 53802860 3104276 3141312..3142022 1 NC_002977.6 identified by similarity to OMNI:CC1988; hypothetical protein 3142022 3104276 MCA2966 Methylococcus capsulatus str. Bath hypothetical protein YP_115355.1 3141312 D 243233 CDS YP_115356.1 53802859 3104107 3142264..3143145 1 NC_002977.6 identified by match to protein family HMM PF00892; hypothetical protein 3143145 3104107 MCA2967 Methylococcus capsulatus str. Bath hypothetical protein YP_115356.1 3142264 D 243233 CDS YP_115357.1 53802858 3103357 3143156..3144124 1 NC_002977.6 identified by match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase 3144124 3103357 MCA2968 Methylococcus capsulatus str. Bath D-isomer specific 2-hydroxyacid dehydrogenase YP_115357.1 3143156 D 243233 CDS YP_115358.1 53802857 3103521 3144153..3144755 1 NC_002977.6 identified by match to protein family HMM PF01205; hypothetical protein 3144755 3103521 MCA2969 Methylococcus capsulatus str. Bath hypothetical protein YP_115358.1 3144153 D 243233 CDS YP_115359.1 53802856 3103653 complement(3144759..3145466) 1 NC_002977.6 identified by similarity to SP:P74618; match to protein family HMM TIGR01198; 6-phosphogluconolactonase 3145466 pgl-2 3103653 pgl-2 Methylococcus capsulatus str. Bath 6-phosphogluconolactonase YP_115359.1 3144759 R 243233 CDS YP_115360.1 53802855 3104139 complement(3145478..3146962) 1 NC_002977.6 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 3146962 zwf-2 3104139 zwf-2 Methylococcus capsulatus str. Bath glucose-6-phosphate 1-dehydrogenase YP_115360.1 3145478 R 243233 CDS YP_115361.1 53802847 3103945 complement(3147067..3147498) 1 NC_002977.6 identified by match to protein family HMM PF03330; match to protein family HMM TIGR00413; lipoprotein 3147498 3103945 MCA2972 Methylococcus capsulatus str. Bath lipoprotein YP_115361.1 3147067 R 243233 CDS YP_115362.1 53802846 3104020 3147581..3147823 1 NC_002977.6 hypothetical protein 3147823 3104020 MCA2973 Methylococcus capsulatus str. Bath hypothetical protein YP_115362.1 3147581 D 243233 CDS YP_115363.1 53802845 3104384 complement(3147994..3150495) 1 NC_002977.6 identified by match to protein family HMM PF00801; PKD domain-containing protein 3150495 3104384 MCA2974 Methylococcus capsulatus str. Bath PKD domain-containing protein YP_115363.1 3147994 R 243233 CDS YP_115364.1 53802844 3104292 3150827..3151441 1 NC_002977.6 identified by similarity to SP:P24234; match to protein family HMM PF00625; guanylate kinase 3151441 gmk 3104292 gmk Methylococcus capsulatus str. Bath guanylate kinase YP_115364.1 3150827 D 243233 CDS YP_115365.1 53802843 3103840 complement(3151442..3151996) 1 NC_002977.6 identified by match to protein family HMM PF00072; match to protein family HMM PF02954; match to protein family HMM TIGR01199; DNA binding response regulator 3151996 3103840 MCA2976 Methylococcus capsulatus str. Bath DNA binding response regulator YP_115365.1 3151442 R 243233 CDS YP_115366.1 53802842 3104340 complement(3151993..3153342) 1 NC_002977.6 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 3153342 3104340 MCA2977 Methylococcus capsulatus str. Bath sensor histidine kinase YP_115366.1 3151993 R 243233 CDS YP_115367.1 53802841 3104585 complement(3153707..3154402) 1 NC_002977.6 identified by similarity to OMNI:VCA0581; match to protein family HMM PF01435; lipoprotein 3154402 3104585 MCA2978 Methylococcus capsulatus str. Bath lipoprotein YP_115367.1 3153707 R 243233 CDS YP_115368.1 53802840 3104553 complement(3154535..3155203) 1 NC_002977.6 identified by similarity to SP:P27110; match to protein family HMM PF01625; match to protein family HMM TIGR00401; peptide methionine sulfoxide reductase 3155203 msrA 3104553 msrA Methylococcus capsulatus str. Bath peptide methionine sulfoxide reductase YP_115368.1 3154535 R 243233 CDS YP_115369.1 53802839 3104392 3155284..3156153 1 NC_002977.6 identified by similarity to SP:P45803; match to protein family HMM PF01430; chaperonin HSP33 3156153 hslO 3104392 hslO Methylococcus capsulatus str. Bath chaperonin HSP33 YP_115369.1 3155284 D 243233 CDS YP_115370.1 53802830 3104098 3156530..3157561 1 NC_002977.6 hypothetical protein 3157561 3104098 MCA2981 Methylococcus capsulatus str. Bath hypothetical protein YP_115370.1 3156530 D 243233 CDS YP_115371.1 53802829 3104247 complement(3157628..3158281) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA05178; match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD superfamily hydrolase 3158281 3104247 MCA2982 Methylococcus capsulatus str. Bath HAD superfamily hydrolase YP_115371.1 3157628 R 243233 CDS YP_115372.1 53802828 3103901 3158347..3159165 1 NC_002977.6 identified by similarity to SP:P22255; match to protein family HMM PF00459; match to protein family HMM TIGR01331; 3'(2'),5'-bisphosphate nucleotidase 3159165 cysQ 3103901 cysQ Methylococcus capsulatus str. Bath 3'(2'),5'-bisphosphate nucleotidase YP_115372.1 3158347 D 243233 CDS YP_115373.1 53802827 3103425 complement(3159162..3160226) 1 NC_002977.6 identified by similarity to OMNI:VC2487; match to protein family HMM TIGR00661; hypothetical protein 3160226 3103425 MCA2984 Methylococcus capsulatus str. Bath hypothetical protein YP_115373.1 3159162 R 243233 CDS YP_115374.1 53802826 3102941 complement(3160223..3160750) 1 NC_002977.6 identified by match to protein family HMM PF01569; PAP2 superfamily protein 3160750 3102941 MCA2985 Methylococcus capsulatus str. Bath PAP2 superfamily protein YP_115374.1 3160223 R 243233 CDS YP_115375.1 53802825 3102963 3160832..3161587 1 NC_002977.6 Involved in pteridine salvage and antifolate resistance; pteridine reductase 3161587 3102963 MCA2986 Methylococcus capsulatus str. Bath pteridine reductase YP_115375.1 3160832 D 243233 CDS YP_115376.1 53802824 3103559 complement(3161584..3162078) 1 NC_002977.6 identified by similarity to OMNI:NTL01EC00142; match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 3162078 folK-2 3103559 folK-2 Methylococcus capsulatus str. Bath 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_115376.1 3161584 R 243233 CDS YP_115377.1 53802815 3103848 complement(3162071..3162436) 1 NC_002977.6 identified by similarity to SP:P31055; match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526; dihydroneopterin aldolase 3162436 folB 3103848 folB Methylococcus capsulatus str. Bath dihydroneopterin aldolase YP_115377.1 3162071 R 243233 CDS YP_115378.1 53802814 3104507 3162516..3163112 1 NC_002977.6 identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023; hypothetical protein 3163112 3104507 MCA2989 Methylococcus capsulatus str. Bath hypothetical protein YP_115378.1 3162516 D 243233 CDS YP_115379.1 53802943 3104269 complement(3163099..3164112) 1 NC_002977.6 identified by similarity to SP:P36175; match to protein family HMM PF00814; match to protein family HMM TIGR00329; O-sialoglycoprotein endopeptidase 3164112 gcp 3104269 gcp Methylococcus capsulatus str. Bath O-sialoglycoprotein endopeptidase YP_115379.1 3163099 R 243233 CDS YP_115380.1 53802942 3103128 3164223..3164456 1 NC_002977.6 identified by similarity to SP:P02379; match to protein family HMM PF01165; match to protein family HMM TIGR00030; 30S ribosomal protein S21 3164456 rpsU 3103128 rpsU Methylococcus capsulatus str. Bath 30S ribosomal protein S21 YP_115380.1 3164223 D 243233 CDS YP_115381.1 53802941 3104356 3164481..3164939 1 NC_002977.6 identified by match to protein family HMM PF02637; GatB/Yqey domain-containing protein 3164939 3104356 MCA2992 Methylococcus capsulatus str. Bath GatB/Yqey domain-containing protein YP_115381.1 3164481 D 243233 CDS YP_115382.1 53802940 3104564 3164997..3166712 1 NC_002977.6 identified by similarity to SP:P02923; match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391; DNA primase 3166712 dnaG 3104564 dnaG Methylococcus capsulatus str. Bath DNA primase YP_115382.1 3164997 D 243233 CDS YP_115383.1 53802939 3103408 3166790..3168589 1 NC_002977.6 identified by similarity to SP:P00579; match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF04546; RNA polymerase sigma-70 factor 3168589 rpoD 3103408 rpoD Methylococcus capsulatus str. Bath RNA polymerase sigma-70 factor YP_115383.1 3166790 D 243233 CDS YP_115384.1 53802938 3103140 complement(3169214..3170236) 1 NC_002977.6 identified by similarity to SP:P19641; match to protein family HMM PF00348; octaprenyl-diphosphate synthase 3170236 ispB 3103140 ispB Methylococcus capsulatus str. Bath octaprenyl-diphosphate synthase YP_115384.1 3169214 R 243233 CDS YP_115385.1 53802930 3103962 complement(3170363..3171721) 1 NC_002977.6 identified by match to protein family HMM PF00155; aminotransferase 3171721 3103962 MCA2997 Methylococcus capsulatus str. Bath aminotransferase YP_115385.1 3170363 R 243233 CDS YP_115386.1 53802929 3104007 3171966..3172334 1 NC_002977.6 hypothetical protein 3172334 3104007 MCA2998 Methylococcus capsulatus str. Bath hypothetical protein YP_115386.1 3171966 D 243233 CDS YP_115387.1 53802928 3103993 3172903..3173577 1 NC_002977.6 identified by similarity to SP:P39594; match to protein family HMM PF02581; match to protein family HMM TIGR00693; thiamine-phosphate pyrophosphorylase 3173577 thiE 3103993 thiE Methylococcus capsulatus str. Bath thiamine-phosphate pyrophosphorylase YP_115387.1 3172903 D 243233 CDS YP_115388.1 53802927 3104517 3173672..3176359 1 NC_002977.6 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 3176359 aceE 3104517 aceE Methylococcus capsulatus str. Bath pyruvate dehydrogenase subunit E1 YP_115388.1 3173672 D 243233 CDS YP_115389.1 53802926 3103554 3176376..3177686 1 NC_002977.6 identified by similarity to SP:P06959; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; branched-chain alpha-keto acid dehydrogenase E2 subunit 3177686 aceF 3103554 aceF Methylococcus capsulatus str. Bath branched-chain alpha-keto acid dehydrogenase E2 subunit YP_115389.1 3176376 D 243233 CDS YP_115390.1 53802925 3103740 3177706..3179127 1 NC_002977.6 identified by similarity to SP:P00391; match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM TIGR01350; pyruvate dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase 3179127 lpdA 3103740 lpdA Methylococcus capsulatus str. Bath pyruvate dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase YP_115390.1 3177706 D 243233 CDS YP_115391.1 53802916 3104086 3179433..3180263 1 NC_002977.6 identified by match to protein family HMM PF01209; UbiE/COQ5 family methlytransferase 3180263 3104086 MCA3003 Methylococcus capsulatus str. Bath UbiE/COQ5 family methlytransferase YP_115391.1 3179433 D 243233 CDS YP_115392.1 53802915 3104134 complement(3180778..3182460) 1 NC_002977.6 identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852; pyridine nucleotide-disulfide oxidoreductase 3182460 3104134 MCA3004 Methylococcus capsulatus str. Bath pyridine nucleotide-disulfide oxidoreductase YP_115392.1 3180778 R 243233 CDS YP_115393.1 53802914 3104345 3182749..3186387 1 NC_002977.6 identified by similarity to OMNI:NTL01SM00503; match to protein family HMM PF00176; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; DEAD/DEAH box helicase 3186387 3104345 MCA3005 Methylococcus capsulatus str. Bath DEAD/DEAH box helicase YP_115393.1 3182749 D 243233 CDS YP_115394.1 53802913 3103693 3186430..3186660 1 NC_002977.6 identified by match to protein family HMM TIGR01439; AbrB family transcriptional regulator 3186660 3103693 MCA3006 Methylococcus capsulatus str. Bath AbrB family transcriptional regulator YP_115394.1 3186430 D 243233 CDS YP_115395.1 53802912 3104163 3186650..3186994 1 NC_002977.6 identified by similarity to OMNI:NTL01SS00950; hypothetical protein 3186994 3104163 MCA3007 Methylococcus capsulatus str. Bath hypothetical protein YP_115395.1 3186650 D 243233 CDS YP_115396.1 53802911 3103540 3186991..3190029 1 NC_002977.6 identified by similarity to OMNI:NTL01SM00500; match to protein family HMM PF06634; hypothetical protein 3190029 3103540 MCA3008 Methylococcus capsulatus str. Bath hypothetical protein YP_115396.1 3186991 D 243233 CDS YP_115397.1 53802910 3103847 3190040..3192835 1 NC_002977.6 identified by match to protein family HMM PF02231; phosphotransferase domain-containing protein 3192835 3103847 MCA3009 Methylococcus capsulatus str. Bath phosphotransferase domain-containing protein YP_115397.1 3190040 D 243233 CDS YP_115398.1 53802901 3104552 3192837..3194108 1 NC_002977.6 identified by similarity to GP:19916313; match to protein family HMM PF04326; hypothetical protein 3194108 3104552 MCA3010 Methylococcus capsulatus str. Bath hypothetical protein YP_115398.1 3192837 D 243233 CDS YP_115399.1 53802900 3103884 3194105..3196933 1 NC_002977.6 identified by similarity to OMNI:NTL01SM00499; hypothetical protein 3196933 3103884 MCA3011 Methylococcus capsulatus str. Bath hypothetical protein YP_115399.1 3194105 D 243233 CDS YP_115400.1 53802899 3103522 3196930..3197874 1 NC_002977.6 identified by similarity to GP:5738269; hypothetical protein 3197874 3103522 MCA3012 Methylococcus capsulatus str. Bath hypothetical protein YP_115400.1 3196930 D 243233 CDS YP_115401.1 53802898 3104497 complement(3198130..3198426) 1 NC_002977.6 identified by similarity to GP:17427894; hypothetical protein 3198426 3104497 MCA3014 Methylococcus capsulatus str. Bath hypothetical protein YP_115401.1 3198130 R 243233 CDS YP_115402.1 53802897 3103877 complement(3199279..3200469) 1 NC_002977.6 identified by similarity to SP:Q44091; oxidoreductase 3200469 3103877 MCA3015 Methylococcus capsulatus str. Bath oxidoreductase YP_115402.1 3199279 R 243233 CDS YP_115403.1 53802896 3104025 3200560..3201087 1 NC_002977.6 identified by similarity to OMNI:VCA0641; match to protein family HMM PF04143; hypothetical protein 3201087 3104025 MCA3016 Methylococcus capsulatus str. Bath hypothetical protein YP_115403.1 3200560 D 243233 CDS YP_115404.1 53802895 3104446 3201094..3201579 1 NC_002977.6 identified by similarity to GP:17427447; hypothetical protein 3201579 3104446 MCA3017 Methylococcus capsulatus str. Bath hypothetical protein YP_115404.1 3201094 D 243233 CDS YP_115405.1 53802894 3103912 complement(3201649..3202554) 1 NC_002977.6 identified by similarity to SP:P55818; methylene tetrahydromethanopterin dehydrogenase/methylenetetrahydrofolate dehydrogenase 3202554 3103912 MCA3018 Methylococcus capsulatus str. Bath methylene tetrahydromethanopterin dehydrogenase/methylenetetrahydrofolate dehydrogenase YP_115405.1 3201649 R 243233 CDS YP_115406.1 53802885 3103356 complement(3202646..3203527) 1 NC_002977.6 identified by similarity to SP:P55818; methylene tetrahydromethanopterin dehydrogenase/methylenetetrahydrofolate dehydrogenase 3203527 3103356 MCA3019 Methylococcus capsulatus str. Bath methylene tetrahydromethanopterin dehydrogenase/methylenetetrahydrofolate dehydrogenase YP_115406.1 3202646 R 243233 CDS YP_115407.1 53802884 3103073 complement(3203673..3206393) 1 NC_002977.6 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 3206393 ppdK 3103073 ppdK Methylococcus capsulatus str. Bath pyruvate phosphate dikinase YP_115407.1 3203673 R 243233 CDS YP_115408.1 53802883 3102870 complement(3206445..3206894) 1 NC_002977.6 identified by similarity to SP:P00832; match to protein family HMM PF00401; match to protein family HMM PF02823; match to protein family HMM TIGR01216; ATP synthase F1 subunit epsilon 3206894 atpC-2 3102870 atpC-2 Methylococcus capsulatus str. Bath ATP synthase F1 subunit epsilon YP_115408.1 3206445 R 243233 CDS YP_115409.1 53802882 3104304 complement(3206903..3207733) 1 NC_002977.6 hypothetical protein 3207733 3104304 MCA3022 Methylococcus capsulatus str. Bath hypothetical protein YP_115409.1 3206903 R 243233 CDS YP_115410.1 53802881 3104577 complement(3207754..3208359) 1 NC_002977.6 identified by similarity to GP:16504180; match to protein family HMM PF01725; match to protein family HMM TIGR00042; Ham1 protein 3208359 3104577 MCA3023 Methylococcus capsulatus str. Bath Ham1 protein YP_115410.1 3207754 R 243233 CDS YP_115411.1 53802880 3103933 complement(3208367..3209098) 1 NC_002977.6 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 3209098 rph 3103933 rph Methylococcus capsulatus str. Bath ribonuclease PH YP_115411.1 3208367 R 243233 CDS YP_115412.1 53802879 3102668 3209172..3211532 1 NC_002977.6 identified by similarity to SP:P15558; match to protein family HMM PF01804; penicillin acylase II 3211532 acyII 3102668 acyII Methylococcus capsulatus str. Bath penicillin acylase II YP_115412.1 3209172 D 243233 CDS YP_115413.1 53802878 3104433 3211616..3212485 1 NC_002977.6 identified by similarity to OMNI:NTL03PA05336; match to protein family HMM PF03755; match to protein family HMM TIGR00255; hypothetical protein 3212485 3104433 MCA3026 Methylococcus capsulatus str. Bath hypothetical protein YP_115413.1 3211616 D 243233 CDS YP_115414.1 53802869 3103947 complement(3212514..3213509) 1 NC_002977.6 identified by match to protein family HMM PF00165; match to protein family HMM TIGR01199; AraC family transcriptional regulator 3213509 3103947 MCA3027 Methylococcus capsulatus str. Bath AraC family transcriptional regulator YP_115414.1 3212514 R 243233 CDS YP_115415.1 53802868 3103744 3213738..3214364 1 NC_002977.6 hypothetical protein 3214364 3103744 MCA3028 Methylococcus capsulatus str. Bath hypothetical protein YP_115415.1 3213738 D 243233 CDS YP_115416.1 53802867 3103823 3214477..3214917 1 NC_002977.6 hypothetical protein 3214917 3103823 MCA3029 Methylococcus capsulatus str. Bath hypothetical protein YP_115416.1 3214477 D 243233 CDS YP_115417.1 53802866 3104378 complement(3214959..3217373) 1 NC_002977.6 identified by similarity to SP:P06982; match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059; DNA gyrase subunit B 3217373 gyrB 3104378 gyrB Methylococcus capsulatus str. Bath DNA gyrase subunit B YP_115417.1 3214959 R 243233 CDS YP_115418.1 53802865 3103806 complement(3217515..3218594) 1 NC_002977.6 identified by similarity to SP:P24900; match to protein family HMM PF02463; match to protein family HMM TIGR00611; DNA replication and repair protein RecF 3218594 recF 3103806 recF Methylococcus capsulatus str. Bath DNA replication and repair protein RecF YP_115418.1 3217515 R 243233 CDS YP_115419.1 53802864 3103618 complement(3218647..3219747) 1 NC_002977.6 identified by match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663; DNA polymerase III subunit beta 3219747 dnaN 3103618 dnaN Methylococcus capsulatus str. Bath DNA polymerase III subunit beta YP_115419.1 3218647 R 243233 CDS YP_115420.1 53802863 3104580 complement(3219779..3221107) 1 NC_002977.6 identified by similarity to SP:P35891; match to protein family HMM PF00308; match to protein family HMM TIGR00362; chromosomal replication initiator protein DnaA 3221107 dnaA 3104580 dnaA Methylococcus capsulatus str. Bath chromosomal replication initiator protein DnaA YP_115420.1 3219779 R 243233 CDS YP_115421.1 53802862 3104095 3221271..3221405 1 NC_002977.6 identified by similarity to SP:P02437; match to protein family HMM PF00468; match to protein family HMM TIGR01030; 50S ribosomal protein L34 3221405 rpmH 3104095 rpmH Methylococcus capsulatus str. Bath 50S ribosomal protein L34 YP_115421.1 3221271 D 243233 CDS YP_115422.1 53802854 3103720 3221405..3221791 1 NC_002977.6 identified by similarity to SP:P06277; match to protein family HMM PF00825; match to protein family HMM TIGR00188; ribonuclease P protein component 3221791 rnpA 3103720 rnpA Methylococcus capsulatus str. Bath ribonuclease P protein component YP_115422.1 3221405 D 243233 CDS YP_115423.1 53802853 3104369 3221767..3221994 1 NC_002977.6 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein 3221994 3104369 MCA3036 Methylococcus capsulatus str. Bath hypothetical protein YP_115423.1 3221767 D 243233 CDS YP_115424.1 53802852 3103721 3221994..3223631 1 NC_002977.6 identified by similarity to SP:P25754; match to protein family HMM PF02096; inner membrane protein 3223631 3103721 MCA3037 Methylococcus capsulatus str. Bath inner membrane protein YP_115424.1 3221994 D 243233 CDS YP_115425.1 53802851 3103934 3223645..3224991 1 NC_002977.6 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 3224991 trmE 3103934 trmE Methylococcus capsulatus str. Bath tRNA modification GTPase TrmE YP_115425.1 3223645 D 243233 CDS YP_115426.1 53802850 3104147 complement(3225001..3225957) 1 NC_002977.6 identified by similarity to SP:P25544; match to protein family HMM PF00126; match to protein family HMM PF03466; rubisco operon transcriptional regulator 3225957 3104147 MCA3039 Methylococcus capsulatus str. Bath rubisco operon transcriptional regulator YP_115426.1 3225001 R 243233 CDS YP_115427.1 53802849 3104505 3226183..3228195 1 NC_002977.6 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 3228195 tkt-1 3104505 tkt-1 Methylococcus capsulatus str. Bath transketolase YP_115427.1 3226183 D 243233 CDS YP_115428.1 53802848 3103532 3228215..3229279 1 NC_002977.6 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 3229279 fbaA-1 3103532 fbaA-1 Methylococcus capsulatus str. Bath fructose-1,6-bisphosphate aldolase YP_115428.1 3228215 D 243233 CDS YP_115429.1 53802838 3104567 3229431..3230117 1 NC_002977.6 hypothetical protein 3230117 3104567 MCA3042 Methylococcus capsulatus str. Bath hypothetical protein YP_115429.1 3229431 D 243233 CDS YP_115430.1 53802837 3103203 3230263..3230910 1 NC_002977.6 identified by similarity to GP:6899861; match to protein family HMM PF00215; hexulose-6-phosphate synthase 3230910 3103203 MCA3043 Methylococcus capsulatus str. Bath hexulose-6-phosphate synthase YP_115430.1 3230263 D 243233 CDS YP_115431.1 53802836 3103621 3230923..3231456 1 NC_002977.6 identified by match to protein family HMM PF01380; SIS domain-containing protein 3231456 3103621 MCA3044 Methylococcus capsulatus str. Bath SIS domain-containing protein YP_115431.1 3230923 D 243233 CDS YP_115432.1 53802835 3104299 3231722..3232711 1 NC_002977.6 Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B 3232711 tal 3104299 tal Methylococcus capsulatus str. Bath transaldolase B YP_115432.1 3231722 D 243233 CDS YP_115433.1 53802834 3103547 3232865..3234877 1 NC_002977.6 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 3234877 tkt-2 3103547 tkt-2 Methylococcus capsulatus str. Bath transketolase YP_115433.1 3232865 D 243233 CDS YP_115434.1 53802833 3103230 3234897..3235961 1 NC_002977.6 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 3235961 fbaA-2 3103230 fbaA-2 Methylococcus capsulatus str. Bath fructose-1,6-bisphosphate aldolase YP_115434.1 3234897 D 243233 CDS YP_115435.1 53802832 3104336 3236113..3236799 1 NC_002977.6 hypothetical protein 3236799 3104336 MCA3048 Methylococcus capsulatus str. Bath hypothetical protein YP_115435.1 3236113 D 243233 CDS YP_115436.1 53802831 3102606 3236945..3237592 1 NC_002977.6 identified by similarity to GP:6899861; match to protein family HMM PF00215; hexulose-6-phosphate synthase 3237592 3102606 MCA3049 Methylococcus capsulatus str. Bath hexulose-6-phosphate synthase YP_115436.1 3236945 D 243233 CDS YP_115437.1 53802823 3103070 3237605..3238138 1 NC_002977.6 identified by match to protein family HMM PF01380; SIS domain-containing protein 3238138 3103070 MCA3050 Methylococcus capsulatus str. Bath SIS domain-containing protein YP_115437.1 3237605 D 243233 CDS YP_115438.1 53802822 3104189 3238358..3239236 1 NC_002977.6 identified by similarity to SP:P23015; match to protein family HMM PF00485; phosphoribulokinase 3239236 cbbP 3104189 cbbP Methylococcus capsulatus str. Bath phosphoribulokinase YP_115438.1 3238358 D 243233 CDS YP_115439.1 53802821 3104162 complement(3239184..3239831) 1 NC_002977.6 identified by similarity to GP:14625828; match to protein family HMM PF01510; N-acetyl-anhydromuranmyl-L-alanine amidase 3239831 ampD 3104162 ampD Methylococcus capsulatus str. Bath N-acetyl-anhydromuranmyl-L-alanine amidase YP_115439.1 3239184 R 243233 CDS YP_115440.1 53802820 3103791 3239982..3242180 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04524; hypothetical protein 3242180 3103791 MCA3053 Methylococcus capsulatus str. Bath hypothetical protein YP_115440.1 3239982 D 243233 CDS YP_115441.1 53802819 3103784 3242212..3242445 1 NC_002977.6 identified by similarity to SP:P30748; match to protein family HMM PF02597; match to protein family HMM TIGR01682; match to protein family HMM TIGR01687; molybdopterin converting factor subunit 1 3242445 moaD 3103784 moaD Methylococcus capsulatus str. Bath molybdopterin converting factor subunit 1 YP_115441.1 3242212 D 243233 CDS YP_115442.1 53802818 3104420 3242447..3242902 1 NC_002977.6 identified by similarity to SP:P30749; match to protein family HMM PF02391; molybdopterin converting factor subunit 2 3242902 moaE 3104420 moaE Methylococcus capsulatus str. Bath molybdopterin converting factor subunit 2 YP_115442.1 3242447 D 243233 CDS YP_115443.1 53802816 3103878 3242915..3243259 1 NC_002977.6 identified by similarity to OMNI:NTL03PA01076; hypothetical protein 3243259 3103878 MCA3056 Methylococcus capsulatus str. Bath hypothetical protein YP_115443.1 3242915 D 243233 CDS YP_115444.1 53802817 3104488 3243256..3244089 1 NC_002977.6 identified by similarity to SP:P76146; match to protein family HMM PF05249; hypothetical protein 3244089 3104488 MCA3057 Methylococcus capsulatus str. Bath hypothetical protein YP_115444.1 3243256 D 243233 CDS YP_115445.1 53802808 3103482 3244196..3244405 1 NC_002977.6 identified by similarity to GP:17431649; match to protein family HMM PF07311; hypothetical protein 3244405 3103482 MCA3058 Methylococcus capsulatus str. Bath hypothetical protein YP_115445.1 3244196 D 243233 CDS YP_115446.1 53802807 3104048 3244437..3244931 1 NC_002977.6 identified by similarity to SP:P30018; match to protein family HMM PF02600; disulfide bond formation protein B 3244931 dsbB 3104048 dsbB Methylococcus capsulatus str. Bath disulfide bond formation protein B YP_115446.1 3244437 D 243233 CDS YP_115447.1 53802806 3103942 3244910..3245965 1 NC_002977.6 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 3245965 hemC 3103942 hemC Methylococcus capsulatus str. Bath porphobilinogen deaminase YP_115447.1 3244910 D 243233 CDS YP_115448.1 53802805 3103622 3245998..3248016 1 NC_002977.6 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane and the formation of precorrin-2 from uroporphyrin III and S-adenosyl-L-methionine by two sequential methylation reactions; functions in tetrapyrrole and heme biosynthesis; bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase 3248016 hemDX 3103622 hemDX Methylococcus capsulatus str. Bath bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase YP_115448.1 3245998 D 243233 CDS YP_115449.1 53802804 3103948 3248013..3249287 1 NC_002977.6 identified by similarity to SP:P09128; match to protein family HMM PF07219; hemY protein 3249287 3103948 MCA3062 Methylococcus capsulatus str. Bath hemY protein YP_115449.1 3248013 D 243233 CDS YP_115450.1 53802803 3103564 complement(3249296..3250792) 1 NC_002977.6 identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148; hypothetical protein 3250792 3103564 MCA3063 Methylococcus capsulatus str. Bath hypothetical protein YP_115450.1 3249296 R 243233 CDS YP_115451.1 53802802 3102899 complement(3250822..3251160) 1 NC_002977.6 hypothetical protein 3251160 3102899 MCA3064 Methylococcus capsulatus str. Bath hypothetical protein YP_115451.1 3250822 R 243233 CDS YP_115452.1 53802801 3103781 3251253..3251903 1 NC_002977.6 identified by similarity to SP:Q05197; phosphatidylethanolamine N-methyltransferase 3251903 3103781 MCA3065 Methylococcus capsulatus str. Bath phosphatidylethanolamine N-methyltransferase YP_115452.1 3251253 D 243233 CDS YP_115453.1 53802800 3104001 3251984..3252706 1 NC_002977.6 identified by similarity to SP:P18196; match to protein family HMM PF03775; match to protein family HMM PF05209; match to protein family HMM TIGR01222; septum site-determining protein MinC 3252706 minC 3104001 minC Methylococcus capsulatus str. Bath septum site-determining protein MinC YP_115453.1 3251984 D 243233 CDS YP_115454.1 53802813 3103188 3252738..3253547 1 NC_002977.6 identified by similarity to SP:P18197; match to protein family HMM PF01656; match to protein family HMM TIGR01968; septum site-determining protein MinD 3253547 minD 3103188 minD Methylococcus capsulatus str. Bath septum site-determining protein MinD YP_115454.1 3252738 D 243233 CDS YP_115455.1 53802812 3104262 3253552..3253833 1 NC_002977.6 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 3253833 minE 3104262 minE Methylococcus capsulatus str. Bath cell division topological specificity factor MinE YP_115455.1 3253552 D 243233 CDS YP_115456.1 53802811 3103887 3253876..3254091 1 NC_002977.6 hypothetical protein 3254091 3103887 MCA3069 Methylococcus capsulatus str. Bath hypothetical protein YP_115456.1 3253876 D 243233 CDS YP_115457.1 53802810 3103786 3254189..3254959 1 NC_002977.6 identified by similarity to SP:P09030; match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III 3254959 xth-2 3103786 xth-2 Methylococcus capsulatus str. Bath exodeoxyribonuclease III YP_115457.1 3254189 D 243233 CDS YP_115458.1 53802809 3104551 3255041..3256063 1 NC_002977.6 identified by similarity to GP:15023878; match to protein family HMM PF00180; NAD-dependent isocitrate dehydrogenase 3256063 3104551 MCA3071 Methylococcus capsulatus str. Bath NAD-dependent isocitrate dehydrogenase YP_115458.1 3255041 D 243233 CDS YP_115459.1 53802792 3104090 complement(3256070..3256885) 1 NC_002977.6 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 3256885 mutM 3104090 mutM Methylococcus capsulatus str. Bath formamidopyrimidine-DNA glycosylase YP_115459.1 3256070 R 243233 CDS YP_115460.1 53802791 3103916 complement(3256892..3258085) 1 NC_002977.6 hypothetical protein 3258085 3103916 MCA3073 Methylococcus capsulatus str. Bath hypothetical protein YP_115460.1 3256892 R 243233 CDS YP_115461.1 53802790 3103396 complement(3258088..3259635) 1 NC_002977.6 identified by similarity to GP:1245347; match to protein family HMM PF03062; alginate O-acetyltransferase 3259635 3103396 MCA3074 Methylococcus capsulatus str. Bath alginate O-acetyltransferase YP_115461.1 3258088 R 243233 CDS YP_115462.1 53802789 3103966 complement(3259727..3260656) 1 NC_002977.6 hypothetical protein 3260656 3103966 MCA3075 Methylococcus capsulatus str. Bath hypothetical protein YP_115462.1 3259727 R 243233 CDS YP_115463.1 53802788 3103399 complement(3260739..3262061) 1 NC_002977.6 identified by similarity to GP:17135441; hypothetical protein 3262061 3103399 MCA3076 Methylococcus capsulatus str. Bath hypothetical protein YP_115463.1 3260739 R 243233 CDS YP_115464.1 53802787 3102898 complement(3262133..3262888) 1 NC_002977.6 identified by similarity to GP:17135440; similarity to OMNI:NT01MC2877; ABC transporter permease 3262888 3102898 MCA3077 Methylococcus capsulatus str. Bath ABC transporter permease YP_115464.1 3262133 R 243233 CDS YP_115465.1 53802785 3104325 complement(3262885..3263829) 1 NC_002977.6 identified by similarity to OMNI:NTL01SS02600; match to protein family HMM PF00005; ABC transporter ATP-binding protein 3263829 3104325 MCA3078 Methylococcus capsulatus str. Bath ABC transporter ATP-binding protein YP_115465.1 3262885 R 243233 CDS YP_115466.1 53802786 3104324 3263893..3265035 1 NC_002977.6 identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00539; oxygen-independent coproporphyrinogen III oxidase 3265035 3104324 MCA3079 Methylococcus capsulatus str. Bath oxygen-independent coproporphyrinogen III oxidase YP_115466.1 3263893 D 243233 CDS YP_115467.1 53802776 3102858 complement(3265053..3265397) 1 NC_002977.6 identified by similarity to GP:17131839; match to protein family HMM PF04020; hypothetical protein 3265397 3102858 MCA3080 Methylococcus capsulatus str. Bath hypothetical protein YP_115467.1 3265053 R 243233 CDS YP_115468.1 53802775 3103699 complement(3265423..3267555) 1 NC_002977.6 identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein/response regulator 3267555 3103699 MCA3081 Methylococcus capsulatus str. Bath sensory box protein/response regulator YP_115468.1 3265423 R 243233 CDS YP_115469.1 53802774 3104175 complement(3267616..3267786) 1 NC_002977.6 hypothetical protein 3267786 3104175 MCA3082 Methylococcus capsulatus str. Bath hypothetical protein YP_115469.1 3267616 R 243233 CDS YP_115470.1 53802773 3104401 3268038..3269219 1 NC_002977.6 identified by similarity to OMNI:NTL03PA03071; match to protein family HMM PF01882; hypothetical protein 3269219 3104401 MCA3083 Methylococcus capsulatus str. Bath hypothetical protein YP_115470.1 3268038 D 243233 CDS YP_115471.1 53802772 3103067 3269224..3269700 1 NC_002977.6 identified by similarity to OMNI:VCA0173; hypothetical protein 3269700 3103067 MCA3084 Methylococcus capsulatus str. Bath hypothetical protein YP_115471.1 3269224 D 243233 CDS YP_115472.1 53802771 3103167 3269712..3270698 1 NC_002977.6 identified by similarity to GP:4838139; match to protein family HMM PF00092; batB protein 3270698 3103167 MCA3085 Methylococcus capsulatus str. Bath batB protein YP_115472.1 3269712 D 243233 CDS YP_115473.1 53802770 3103624 3270749..3272488 1 NC_002977.6 identified by match to protein family HMM PF00515; hypothetical protein 3272488 3103624 MCA3086 Methylococcus capsulatus str. Bath hypothetical protein YP_115473.1 3270749 D 243233 CDS YP_115474.1 53802769 3104267 3272491..3274278 1 NC_002977.6 identified by similarity to OMNI:NTL03PA03075; hypothetical protein 3274278 3104267 MCA3087 Methylococcus capsulatus str. Bath hypothetical protein YP_115474.1 3272491 D 243233 CDS YP_115475.1 53802768 3103192 complement(3274233..3274433) 1 NC_002977.6 hypothetical protein 3274433 3103192 MCA3088 Methylococcus capsulatus str. Bath hypothetical protein YP_115475.1 3274233 R 243233 CDS YP_115476.1 53802759 3104342 3274549..3276309 1 NC_002977.6 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 3276309 argS 3104342 argS Methylococcus capsulatus str. Bath arginyl-tRNA synthetase YP_115476.1 3274549 D 243233 CDS YP_115477.1 53802758 3104040 3276312..3276953 1 NC_002977.6 identified by similarity to OMNI:NTL03PA05053; match to protein family HMM PF05036; hypothetical protein 3276953 3104040 MCA3090 Methylococcus capsulatus str. Bath hypothetical protein YP_115477.1 3276312 D 243233 CDS YP_115478.1 53802757 3104015 complement(3276960..3278324) 1 NC_002977.6 identified by similarity to OMNI:VC0899; match to protein family HMM PF03641; decarboxylase 3278324 3104015 MCA3091 Methylococcus capsulatus str. Bath decarboxylase YP_115478.1 3276960 R 243233 CDS YP_115479.1 53802756 3104550 complement(3278549..3279103) 1 NC_002977.6 identified by similarity to GP:21464612; match to protein family HMM PF03167; uracil-DNA glycosylase 3279103 ung 3104550 ung Methylococcus capsulatus str. Bath uracil-DNA glycosylase YP_115479.1 3278549 R 243233 CDS YP_115480.1 53802755 3103861 complement(3279169..3281208) 1 NC_002977.6 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 3281208 3103861 MCA3093 Methylococcus capsulatus str. Bath glucosyltransferase MdoH YP_115480.1 3279169 R 243233 CDS YP_115481.1 53802754 3102917 complement(3281224..3281703) 1 NC_002977.6 hypothetical protein 3281703 3102917 MCA3094 Methylococcus capsulatus str. Bath hypothetical protein YP_115481.1 3281224 R 243233 CDS YP_115482.1 53802753 3104394 complement(3281700..3283196) 1 NC_002977.6 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 3283196 mdoG 3104394 mdoG Methylococcus capsulatus str. Bath glucan biosynthesis protein G YP_115482.1 3281700 R 243233 CDS YP_115483.1 53802752 3103569 3283518..3284018 1 NC_002977.6 identified by match to protein family HMM PF00300; phosphoglycerate mutase 3284018 3103569 MCA3096 Methylococcus capsulatus str. Bath phosphoglycerate mutase YP_115483.1 3283518 D 243233 CDS YP_115484.1 53802743 3104593 complement(3284032..3284406) 1 NC_002977.6 identified by similarity to OMNI:VC2455; hypothetical protein 3284406 3104593 MCA3097 Methylococcus capsulatus str. Bath hypothetical protein YP_115484.1 3284032 R 243233 CDS YP_115485.1 53802742 3102470 complement(3284484..3285398) 1 NC_002977.6 hypothetical protein 3285398 3102470 MCA3098 Methylococcus capsulatus str. Bath hypothetical protein YP_115485.1 3284484 R 243233 CDS YP_115486.1 53802741 3102685 3285612..3287387 1 NC_002977.6 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 3287387 3102685 MCA3099 Methylococcus capsulatus str. Bath sensor histidine kinase YP_115486.1 3285612 D 243233 CDS YP_115487.1 53802740 3103042 3287384..3287752 1 NC_002977.6 identified by match to protein family HMM PF00072; response regulator 3287752 3103042 MCA3100 Methylococcus capsulatus str. Bath response regulator YP_115487.1 3287384 D 243233 CDS YP_115488.1 53802739 3103043 complement(3287761..3288603) 1 NC_002977.6 identified by similarity to SP:P30819; match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; nicotinate-nucleotide pyrophosphorylase 3288603 nadC 3103043 nadC Methylococcus capsulatus str. Bath nicotinate-nucleotide pyrophosphorylase YP_115488.1 3287761 R 243233 CDS YP_115489.1 53802738 3102733 complement(3288608..3289759) 1 NC_002977.6 identified by similarity to SP:P39665; phosphate binding protein 3289759 3102733 MCA3102 Methylococcus capsulatus str. Bath phosphate binding protein YP_115489.1 3288608 R 243233 CDS YP_115490.1 53802737 3102069 complement(3289936..3290982) 1 NC_002977.6 identified by similarity to GP:4104020; match to protein family HMM PF00691; match to protein family HMM PF02412; outer membrane protein MopB 3290982 mopB 3102069 mopB Methylococcus capsulatus str. Bath outer membrane protein MopB YP_115490.1 3289936 R 243233 CDS YP_115491.1 53802736 3103886 complement(3291180..3292496) 1 NC_002977.6 identified by similarity to SP:P08400; match to protein family HMM PF00512; match to protein family HMM PF02518; histidine protein kinase PhoR 3292496 phoR 3103886 phoR Methylococcus capsulatus str. Bath histidine protein kinase PhoR YP_115491.1 3291180 R 243233 CDS YP_115492.1 53802727 3104920 complement(3292500..3293198) 1 NC_002977.6 identified by similarity to SP:P08402; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR02154; DNA-binding response regulator PhoB 3293198 phoB 3104920 phoB Methylococcus capsulatus str. Bath DNA-binding response regulator PhoB YP_115492.1 3292500 R 243233 CDS YP_115493.1 53802726 3104949 complement(3293305..3295884) 1 NC_002977.6 identified by similarity to SP:P03815; match to protein family HMM PF00004; match to protein family HMM PF02861; ATP-dependent Clp protease, ATP-binding subunit ClpB 3295884 clpB 3104949 clpB Methylococcus capsulatus str. Bath ATP-dependent Clp protease, ATP-binding subunit ClpB YP_115493.1 3293305 R 243233 CDS YP_115494.1 53802725 3104131 3296120..3296443 1 NC_002977.6 identified by similarity to OMNI:NTL03PA03284; hypothetical protein 3296443 3104131 MCA3107 Methylococcus capsulatus str. Bath hypothetical protein YP_115494.1 3296120 D 243233 CDS YP_115495.1 53802724 3104866 3296470..3297321 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04106; match to protein family HMM PF05114; hypothetical protein 3297321 3104866 MCA3108 Methylococcus capsulatus str. Bath hypothetical protein YP_115495.1 3296470 D 243233 CDS YP_115496.1 53802723 3102283 3297314..3298072 1 NC_002977.6 identified by similarity to OMNI:NTL03PA03282; hypothetical protein 3298072 3102283 MCA3109 Methylococcus capsulatus str. Bath hypothetical protein YP_115496.1 3297314 D 243233 CDS YP_115497.1 53802722 3103352 complement(3298079..3301144) 1 NC_002977.6 identified by similarity to OMNI:NTL03PA04736; match to protein family HMM PF05359; hypothetical protein 3301144 3103352 MCA3110 Methylococcus capsulatus str. Bath hypothetical protein YP_115497.1 3298079 R 243233 CDS YP_115498.1 53802721 3103303 complement(3301356..3301799) 1 NC_002977.6 identified by similarity to OMNI:NTL01SM02805; hypothetical protein 3301799 3103303 MCA3111 Methylococcus capsulatus str. Bath hypothetical protein YP_115498.1 3301356 R 243233 CDS YP_115499.1 53802720 3102113 complement(3301796..3302725) 1 NC_002977.6 identified by similarity to GP:9971722; match to protein family HMM PF01145; hypothetical protein 3302725 3102113 MCA3112 Methylococcus capsulatus str. Bath hypothetical protein YP_115499.1 3301796 R 243233 CDS YP_115500.1 53802711 3105028 3303049..3304521 1 NC_002977.6 identified by similarity to OMNI:NTL03PA03455; match to protein family HMM PF03976; hypothetical protein 3304521 3105028 MCA3113 Methylococcus capsulatus str. Bath hypothetical protein YP_115500.1 3303049 D 243233 CDS