-- dump date 20140619_144917 -- class Genbank::CDS -- table cds_note -- id note YP_112542.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_112543.1 identified by similarity to SP:P17113; match to protein family HMM PF02527; match to protein family HMM TIGR00138 YP_112544.1 identified by match to protein family HMM PF01656 YP_112545.1 identified by similarity to SP:P26497; match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_112546.1 identified by similarity to SP:P25760; match to protein family HMM PF03899 YP_112547.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_112548.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_112549.1 identified by similarity to SP:P00859; match to protein family HMM PF00430; match to protein family HMM TIGR01144 YP_112550.1 identified by similarity to SP:P00831; match to protein family HMM PF00213; match to protein family HMM TIGR01145 YP_112551.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_112552.1 identified by similarity to SP:P00837; match to protein family HMM PF00231; match to protein family HMM TIGR01146 YP_112553.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_112554.1 identified by similarity to SP:P00832; match to protein family HMM PF00401; match to protein family HMM PF02823; match to protein family HMM TIGR01216 YP_112555.1 identified by similarity to SP:P17114; match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM TIGR01173 YP_112556.1 identified by similarity to SP:P17169; match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135 YP_112557.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_112558.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate YP_112559.1 identified by match to protein family HMM PF04452; match to protein family HMM TIGR00046 YP_112560.1 identified by similarity to OMNI:NTL03PA01045 YP_112561.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system YP_112562.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_112563.1 identified by similarity to SP:P06961; match to protein family HMM PF01743; match to protein family HMM PF01966 YP_112564.1 identified by similarity to OMNI:NTL03PA00341; match to protein family HMM PF01925 YP_112565.1 identified by similarity to GP:4558604; match to protein family HMM TIGR01198 YP_112566.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_112567.1 identified by similarity to SP:P08764; match to protein family HMM PF04851 YP_112568.1 identified by match to protein family HMM PF00872 YP_112569.1 identified by similarity to GP:19913854; match to protein family HMM PF01909 YP_112570.1 identified by similarity to OMNI:NMB1852; match to protein family HMM PF04480 YP_112571.1 identified by similarity to OMNI:PG0277 YP_112572.1 identified by similarity to OMNI:PG0277 YP_112573.1 identified by similarity to SP:P23840 YP_112577.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate YP_112578.1 identified by similarity to SP:P10177; match to protein family HMM PF01081; match to protein family HMM TIGR01182 YP_112579.1 identified by similarity to OMNI:NTL02ML4093; match to protein family HMM PF02734 YP_112580.1 identified by similarity to OMNI:NTL02ML4088; match to protein family HMM PF02733 YP_112581.1 identified by similarity to OMNI:NTL01BH3849; match to protein family HMM PF01408; match to protein family HMM PF02894 YP_112582.1 identified by similarity to SP:Q9BGI1; match to protein family HMM PF00578 YP_112583.1 identified by similarity to SP:P37351; match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120 YP_112584.1 identified by similarity to GP:17132485 YP_112585.1 Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures YP_112586.1 identified by similarity to OMNI:CC1747; match to protein family HMM PF03819; match to protein family HMM TIGR00444 YP_112587.1 identified by match to protein family HMM PF00294 YP_112588.1 identified by similarity to SP:P00556; match to protein family HMM PF01219 YP_112589.1 identified by match to protein family HMM PF00553 YP_112590.1 identified by match to protein family HMM PF01609 YP_112591.1 identified by similarity to SP:P23884; match to protein family HMM PF01597; match to protein family HMM TIGR00527 YP_112592.1 identified by similarity to SP:P21590; match to protein family HMM PF01883 YP_112593.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_112594.1 identified by similarity to SP:P23893; match to protein family HMM PF00202; match to protein family HMM TIGR00713 YP_112595.1 identified by match to protein family HMM PF00597 YP_112596.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_112597.1 identified by similarity to SP:P00274; match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_112598.1 identified by similarity to SP:Q59601; match to protein family HMM PF01553 YP_112599.1 identified by similarity to OMNI:NTL03PA04351 YP_112600.1 identified by similarity to OMNI:VC2444 YP_112601.1 identified by similarity to SP:P45754; match to protein family HMM PF01471 YP_112602.1 converts protoheme IX and farnesyl diphosphate to heme O YP_112603.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_112604.1 identified by match to protein family HMM PF05193 YP_112605.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_112606.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01510 YP_112607.1 identified by similarity to SP:P11217; match to protein family HMM PF00343; match to protein family HMM TIGR02093 YP_112610.1 identified by match to protein family HMM PF02690 YP_112611.1 identified by match to protein family HMM PF01871; match to protein family HMM TIGR00296 YP_112612.1 identified by similarity to SP:O67039; match to protein family HMM PF01875 YP_112613.1 identified by similarity to OMNI:MT3225; match to protein family HMM PF04055 YP_112614.1 identified by similarity to SP:P39100; match to protein family HMM PF00043; match to protein family HMM PF02798 YP_112615.1 identified by match to protein family HMM PF01764 YP_112617.1 identified by similarity to GP:17427297 YP_112620.1 identified by similarity to SP:P30856; match to protein family HMM PF00254 YP_112621.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125 YP_112622.1 identified by similarity to OMNI:NTL01SS01907 YP_112625.1 identified by similarity to OMNI:NTL03PA04557; match to protein family HMM PF00114 YP_112628.1 identified by similarity to GP:17429699 YP_112629.1 identified by similarity to OMNI:NTL03PA04552 YP_112630.1 identified by similarity to GP:17431765 YP_112631.1 identified by similarity to SP:P32066 YP_112632.1 identified by match to protein family HMM PF00005 YP_112633.1 identified by match to protein family HMM PF01398 YP_112634.1 identified by similarity to SP:P37278; match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_112635.1 identified by match to protein family HMM PF01609 YP_112636.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_112637.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_112638.1 identified by similarity to SP:O06492; match to protein family HMM PF02686; match to protein family HMM TIGR00135 YP_112639.1 functions in MreBCD complex in some organisms YP_112640.1 identified by similarity to SP:P16926; match to protein family HMM PF04085; match to protein family HMM TIGR00219 YP_112641.1 identified by similarity to SP:P16927; match to protein family HMM PF04093 YP_112642.1 identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717 YP_112643.1 identified by similarity to SP:P15035; match to protein family HMM PF01098; match to protein family HMM TIGR02210 YP_112644.1 identified by similarity to SP:P08506; match to protein family HMM PF00144; match to protein family HMM PF00768 YP_112645.1 identified by similarity to SP:P54692; match to protein family HMM PF01063 YP_112646.1 identified by similarity to GP:17427335; match to protein family HMM PF04359 YP_112647.1 identified by similarity to OMNI:NTL03PA00914; match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400 YP_112648.1 identified by similarity to SP:Q9PDV9; match to protein family HMM PF03099; match to protein family HMM TIGR00214 YP_112649.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_112650.1 identified by similarity to OMNI:MT0787 YP_112651.1 identified by similarity to SP:P17288; match to protein family HMM PF00719 YP_112652.1 identified by similarity to GP:1313919 YP_112653.1 identified by similarity to SP:P22320 YP_112654.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_112655.1 identified by similarity to GP:19914581; match to protein family HMM PF06803 YP_112656.1 identified by similarity to OMNI:VC1575 YP_112657.1 identified by match to protein family HMM PF00535 YP_112658.1 identified by match to protein family HMM PF00583 YP_112659.1 identified by match to protein family HMM PF01594 YP_112661.1 identified by similarity to GP:9106685 YP_112666.1 identified by similarity to SP:P75790; match to protein family HMM PF00005 YP_112667.1 identified by similarity to GP:17133833; match to protein family HMM PF00472 YP_112668.1 identified by similarity to SP:P41780; match to protein family HMM PF02424 YP_112670.1 identified by similarity to OMNI:NTL03PA00111 YP_112671.1 identified by similarity to OMNI:NTL03PA00112 YP_112672.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02628; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_112673.1 identified by similarity to SP:P10115; match to protein family HMM PF00005 YP_112674.1 identified by similarity to SP:P10122; match to protein family HMM PF02687 YP_112675.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters YP_112676.1 identified by similarity to SP:P00394; match to protein family HMM PF02219; match to protein family HMM TIGR00676 YP_112677.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_112678.1 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_112679.1 identified by match to protein family HMM PF00535 YP_112680.1 identified by similarity to GP:17430491; match to protein family HMM PF01161; match to protein family HMM TIGR00481 YP_112681.1 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00378 YP_112682.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans YP_112685.1 identified by similarity to GP:4972659; match to protein family HMM PF02397 YP_112686.1 identified by similarity to SP:Q46629; match to protein family HMM PF02563 YP_112687.1 identified by match to protein family HMM PF02706 YP_112690.1 identified by match to protein family HMM PF00534 YP_112692.1 identified by similarity to OMNI:VC0925; match to protein family HMM PF00534 YP_112695.1 identified by similarity to SP:P37773; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01081 YP_112696.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP YP_112698.1 identified by similarity to SP:P19932; match to protein family HMM PF04809 YP_112699.1 identified by similarity to SP:Q03004; match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140; match to protein family HMM TIGR00141 YP_112700.1 identified by similarity to SP:Q43953; match to protein family HMM PF01292; match to protein family HMM TIGR02125 YP_112701.1 identified by similarity to GP:19421553; match to protein family HMM PF04955 YP_112702.1 identified by similarity to SP:P18636; match to protein family HMM PF00374 YP_112703.1 identified by similarity to SP:P21950; match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409 YP_112704.1 identified by similarity to GP:7380649; match to protein family HMM PF04367 YP_112705.1 identified by match to protein family HMM PF00005 YP_112706.1 identified by similarity to OMNI:TM0193; match to protein family HMM PF03649; match to protein family HMM TIGR00245 YP_112707.1 identified by similarity to OMNI:NTL03PA00287; match to protein family HMM PF00487 YP_112708.1 identified by similarity to GP:17427325 YP_112709.1 identified by similarity to GP:17427324; match to protein family HMM PF02470 YP_112710.1 identified by similarity to OMNI:NTL01SM01832; match to protein family HMM PF00005 YP_112711.1 identified by match to protein family HMM PF02405 YP_112713.1 identified by similarity to GP:17431587; match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_112714.1 identified by similarity to GP:17432073; match to protein family HMM TIGR01730 YP_112719.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_112720.2 identified by similarity to SP:P51001; match to protein family HMM PF01380; match to protein family HMM TIGR00441 YP_112721.1 identified by similarity to GP:17430288; match to protein family HMM PF02021; match to protein family HMM TIGR00252 YP_112722.1 identified by similarity to OMNI:NTL03PA04424; match to protein family HMM PF04348 YP_112723.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_112724.1 identified by similarity to OMNI:NTL01SM00894; match to protein family HMM PF01522 YP_112725.1 identified by similarity to OMNI:NTL01EC04037 YP_112731.1 identified by similarity to GP:18893765; match to protein family HMM PF01139 YP_112732.1 identified by similarity to GP:18893692; match to protein family HMM PF01951 YP_112733.1 identified by similarity to OMNI:NTL02SS0707; match to protein family HMM PF01864 YP_112734.1 identified by match to protein family HMM PF00149 YP_112736.1 identified by similarity to GP:15020688 YP_112737.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis YP_112738.1 identified by similarity to OMNI:NTL02ML3042; match to protein family HMM PF05169; match to protein family HMM TIGR02174 YP_112739.1 identified by similarity to SP:P20190 YP_112740.1 identified by similarity to SP:P27714; match to protein family HMM PF02579; match to protein family HMM PF04055; match to protein family HMM TIGR01290 YP_112741.1 identified by similarity to GP:1518927; match to protein family HMM PF00037 YP_112742.1 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049 YP_112743.1 identified by similarity to GP:142364 YP_112744.1 identified by match to protein family HMM PF01816 YP_112745.1 identified by similarity to SP:P08533; match to protein family HMM PF04319 YP_112747.1 identified by similarity to GP:12620472 YP_112748.1 identified by similarity to SP:Q43884; match to protein family HMM PF00266 YP_112749.1 identified by similarity to OMNI:NTL02ML4553; match to protein family HMM PF06988 YP_112750.1 identified by similarity to GP:551688 YP_112751.1 identified by match to protein family HMM PF01041 YP_112752.1 identified by similarity to SP:P25528; match to protein family HMM PF00111 YP_112754.1 identified by similarity to GP:7407093 YP_112755.1 identified by similarity to OMNI:NTL01XF02028; match to protein family HMM PF03692 YP_112756.1 identified by similarity to OMNI:NTL01ATC0362 YP_112757.1 identified by similarity to GP:17135185 YP_112758.1 identified by similarity to GP:2983454 YP_112759.1 identified by similarity to GP:862325; match to protein family HMM PF03960; match to protein family HMM TIGR01616 YP_112761.1 identified by similarity to GP:1754625; match to protein family HMM PF00355 YP_112762.1 identified by match to protein family HMM PF01609 YP_112763.1 identified by match to protein family HMM PF00072 YP_112764.1 nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; in R. etli there are three essentially identical copies of nifH which are actively expressed during symbiosis YP_112765.1 identified by similarity to SP:P06120; match to protein family HMM PF00148; match to protein family HMM TIGR01282; match to protein family HMM TIGR01862 YP_112766.1 identified by similarity to SP:P20621; match to protein family HMM PF00148; match to protein family HMM TIGR01286 YP_112767.1 identified by similarity to SP:P37097; match to protein family HMM PF00111 YP_112768.1 identified by similarity to SP:P26506; match to protein family HMM PF00148; match to protein family HMM PF04324; match to protein family HMM TIGR01283 YP_112769.1 identified by similarity to SP:P26507; match to protein family HMM PF00148; match to protein family HMM TIGR01285 YP_112770.1 identified by similarity to SP:P19078; match to protein family HMM PF02579 YP_112771.1 identified by similarity to GP:12620458; match to protein family HMM PF03270 YP_112772.1 identified by similarity to SP:Q44148; match to protein family HMM PF05082 YP_112773.1 identified by similarity to SP:P46036; match to protein family HMM PF00037 YP_112774.1 identified by similarity to SP:P11068; match to protein family HMM PF04891 YP_112775.1 identified by similarity to OMNI:NTL03PA00760; match to protein family HMM PF01571 YP_112776.1 protein associated with Co2+ and Mg2+ efflux YP_112777.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_112778.1 binds and unfolds substrates as part of the ClpXP protease YP_112780.1 identified by similarity to GP:17135818; match to protein family HMM PF05063 YP_112781.1 identified by similarity to SP:P39171; match to protein family HMM PF00266; match to protein family HMM TIGR02006 YP_112782.1 identified by similarity to SP:P77310; match to protein family HMM PF01592; match to protein family HMM TIGR01999 YP_112783.1 identified by similarity to GP:17427504; match to protein family HMM PF01521; match to protein family HMM TIGR00049 YP_112784.1 identified by similarity to GP:2271523; match to protein family HMM PF01521; match to protein family HMM TIGR00049; match to protein family HMM TIGR02011 YP_112785.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins YP_112786.1 involved in the maturation of iron-sulfur cluster-containing proteins YP_112787.1 identified by similarity to SP:P25528; match to protein family HMM PF00111; match to protein family HMM TIGR02007 YP_112788.1 identified by similarity to SP:P05342; match to protein family HMM PF00682 YP_112789.1 identified by similarity to SP:P26481; match to protein family HMM PF03206 YP_112790.1 identified by similarity to SP:O66511 YP_112791.1 identified by similarity to GP:17131609 YP_112792.1 identified by similarity to SP:P25528; match to protein family HMM PF00111 YP_112793.1 identified by similarity to GP:19880969; match to protein family HMM TIGR00365 YP_112794.1 identified by match to protein family HMM PF01722 YP_112795.1 identified by similarity to OMNI:TM1186 YP_112796.1 identified by match to protein family HMM PF00004 YP_112797.1 identified by similarity to OMNI:NTL01BM1881; match to protein family HMM PF01557 YP_112802.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836 YP_112803.1 identified by similarity to OMNI:NTL02SA0423 YP_112804.1 identified by similarity to SP:P43933; match to protein family HMM PF01909 YP_112805.1 identified by match to protein family HMM TIGR01987 YP_112808.1 identified by similarity to OMNI:NTL01XF02722; match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851 YP_112809.1 identified by match to protein family HMM PF01381 YP_112810.1 identified by similarity to GP:4098979 YP_112811.1 identified by similarity to GP:9187842 YP_112812.1 identified by similarity to OMNI:NTL03PA02735; match to protein family HMM PF02384; match to protein family HMM PF02506 YP_112813.1 identified by similarity to GP:2764916; match to protein family HMM TIGR01764 YP_112815.1 identified by match to protein family HMM PF00665 YP_112816.1 identified by match to protein family HMM PF01527 YP_112817.1 identified by match to protein family HMM PF00543 YP_112818.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_112821.1 identified by similarity to SP:P13034; match to protein family HMM PF00037 YP_112822.1 identified by match to protein family HMM PF01464 YP_112823.1 identified by match to protein family HMM PF00383 YP_112824.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_112825.1 identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302 YP_112826.1 identified by similarity to OMNI:NTL02ML5888 YP_112827.1 identified by similarity to OMNI:NTL03PA04929; match to protein family HMM PF04055 YP_112829.1 identified by similarity to GP:14456716; match to protein family HMM PF04896 YP_112830.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100 YP_112831.1 identified by similarity to OMNI:NTL01SMB00167 YP_112832.1 identified by similarity to OMNI:NTL01SMB00168; match to protein family HMM PF00753 YP_112833.1 identified by similarity to SP:P15279; match to protein family HMM PF01011 YP_112834.1 identified by similarity to GP:1657793 YP_112835.1 identified by similarity to SP:P14825; match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499 YP_112836.1 identified by similarity to SP:P07012; match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020 YP_112837.1 identified by match to protein family HMM PF05229 YP_112838.1 identified by similarity to SP:P30130; match to protein family HMM PF00577 YP_112839.1 identified by similarity to SP:P53520 YP_112840.1 identified by similarity to SP:P27755; match to protein family HMM PF05229 YP_112841.1 identified by match to protein family HMM PF01609 YP_112842.1 identified by similarity to GP:9950618; match to protein family HMM PF01243 YP_112843.1 identified by similarity to OMNI:NTL01AT1832 YP_112844.1 identified by similarity to OMNI:NTL03PA05109 YP_112845.1 identified by similarity to OMNI:NTL03PA04496; match to protein family HMM PF04402 YP_112846.1 identified by similarity to SP:P25662; match to protein family HMM PF01145; match to protein family HMM TIGR01933 YP_112847.1 identified by similarity to SP:P25661; match to protein family HMM PF01145; match to protein family HMM TIGR01932 YP_112849.1 identified by match to protein family HMM PF00440 YP_112851.1 identified by similarity to SP:Q49128; match to protein family HMM PF03150 YP_112852.1 identified by similarity to SP:P36670; match to protein family HMM PF07690 YP_112853.1 identified by similarity to SP:P37454; match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_112854.1 identified by similarity to SP:P02432; match to protein family HMM PF01197; match to protein family HMM TIGR00105 YP_112855.1 identified by similarity to GP:17429805 YP_112856.1 identified by similarity to SP:P02918; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_112857.1 identified by similarity to OMNI:NTL03PA05045; match to protein family HMM TIGR01175 YP_112858.1 identified by similarity to OMNI:NTL03PA05044; match to protein family HMM PF05137 YP_112859.1 identified by similarity to OMNI:NTL03PA05043; match to protein family HMM PF04350 YP_112860.1 identified by similarity to OMNI:NTL03PA05042; match to protein family HMM PF04351 YP_112861.1 identified by similarity to SP:P34750; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660 YP_112862.1 identified by similarity to SP:P24167; match to protein family HMM PF01202 YP_112863.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_112864.1 identified by match to protein family HMM PF01208; match to protein family HMM TIGR01464 YP_112865.1 identified by similarity to OMNI:MT1739; match to protein family HMM PF00293 YP_112866.1 identified by similarity to GP:14026911; match to protein family HMM PF04343 YP_112867.1 identified by similarity to GP:15619037 YP_112869.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_112870.1 identified by similarity to GP:4325062 YP_112871.1 identified by similarity to GP:17428048; match to protein family HMM PF02646 YP_112872.1 identified by similarity to GP:17133197 YP_112874.1 identified by match to protein family HMM PF00488 YP_112875.1 identified by similarity to SP:P05446; match to protein family HMM PF00753 YP_112876.1 identified by match to protein family HMM PF00324 YP_112877.1 identified by similarity to SP:P14532; match to protein family HMM PF03150 YP_112880.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_112881.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_112882.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_112883.1 identified by match to protein family HMM PF02627 YP_112884.1 identified by similarity to OMNI:AF0187; match to protein family HMM PF02635 YP_112885.1 identified by similarity to OMNI:DR0566; match to protein family HMM PF04543 YP_112886.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway YP_112887.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_112889.1 identified by similarity to OMNI:NTL03PA00341 YP_112890.1 identified by similarity to SP:P05100; match to protein family HMM PF03352 YP_112891.1 identified by match to protein family HMM PF02231 YP_112892.1 identified by similarity to OMNI:NTL03PA03755; match to protein family HMM PF00293 YP_112893.1 identified by match to protein family HMM PF01071; match to protein family HMM PF02842; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877 YP_112894.1 identified by similarity to SP:P43671 YP_112895.1 identified by similarity to OMNI:NTL03PA04964; match to protein family HMM PF03886 YP_112896.1 identified by similarity to GP:15808730 YP_112898.1 identified by match to protein family HMM PF02012 YP_112899.1 identified by match to protein family HMM PF00246 YP_112900.1 identified by match to protein family HMM PF00561 YP_112901.1 identified by match to protein family HMM PF00165 YP_112903.1 identified by similarity to GP:14027356; match to protein family HMM PF01066 YP_112904.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_112905.1 identified by similarity to OMNI:CC0469; match to protein family HMM PF00535 YP_112907.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_112908.1 SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_112909.1 identified by similarity to SP:Q02169; match to protein family HMM PF02545; match to protein family HMM TIGR00172 YP_112910.1 identified by similarity to SP:P25537; match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_112911.1 identified by similarity to OMNI:NTL02EC4081; match to protein family HMM TIGR02099 YP_112912.1 identified by similarity to OMNI:NTL01NM01917; match to protein family HMM PF00795 YP_112913.1 identified by similarity to SP:P46473; match to protein family HMM PF01523 YP_112914.1 identified by similarity to SP:P24231; match to protein family HMM PF01523 YP_112916.1 identified by similarity to SP:P41053; match to protein family HMM PF02464; match to protein family HMM TIGR00199 YP_112917.1 identified by similarity to SP:P37025; match to protein family HMM PF02834; match to protein family HMM TIGR02258 YP_112918.1 identified by similarity to SP:P18076; match to protein family HMM PF00154; match to protein family HMM TIGR02012 YP_112919.1 identified by similarity to SP:P37861; match to protein family HMM PF02631 YP_112920.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_112921.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_112922.1 identified by similarity to SP:P31803; match to protein family HMM PF02599; match to protein family HMM TIGR00202 YP_112923.1 identified by similarity to SP:P02372; match to protein family HMM PF00886; match to protein family HMM TIGR00002 YP_112924.1 identified by similarity to SP:P21504; match to protein family HMM PF01782; match to protein family HMM PF05239; match to protein family HMM TIGR02273 YP_112925.1 identified by similarity to SP:P07020; match to protein family HMM PF01746; match to protein family HMM TIGR00088 YP_112926.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_112927.1 identified by similarity to SP:P21891; match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225 YP_112928.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_112929.1 identified by similarity to GP:1001423; match to protein family HMM PF01408; match to protein family HMM PF02894 YP_112930.1 identified by match to protein family HMM PF01041 YP_112931.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_112932.1 identified by similarity to OMNI:CC2202; match to protein family HMM PF01272 YP_112933.1 identified by similarity to OMNI:DR2490; match to protein family HMM PF01863 YP_112934.1 identified by similarity to GP:2327006 YP_112936.1 identified by similarity to OMNI:NTL01SMA00006 YP_112939.1 identified by similarity to OMNI:NTL01SS00205 YP_112943.1 identified by similarity to SP:P40680; match to protein family HMM PF01476; match to protein family HMM PF03734 YP_112944.1 identified by similarity to OMNI:NTL01SM00917; match to protein family HMM PF02622 YP_112945.1 identified by similarity to SP:P45806; match to protein family HMM PF07119 YP_112946.1 identified by similarity to OMNI:NTL03PA01484 YP_112947.1 identified by similarity to SP:P33925; match to protein family HMM PF03918 YP_112948.1 identified by similarity to SP:P33926; match to protein family HMM TIGR00385 YP_112949.1 identified by similarity to SP:P33927; match to protein family HMM PF01578; match to protein family HMM TIGR00353 YP_112950.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane YP_112951.1 identified by similarity to SP:P45035; match to protein family HMM PF04995 YP_112953.1 identified by match to protein family HMM PF00801 YP_112954.1 identified by similarity to GP:4325063 YP_112960.1 identified by match to protein family HMM PF00037 YP_112961.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00667; match to protein family HMM TIGR01931 YP_112963.1 identified by match to protein family HMM PF01436; match to protein family HMM TIGR01905 YP_112964.1 identified by similarity to SP:P33926; match to protein family HMM TIGR00385 YP_112965.1 identified by similarity to OMNI:VC1548 YP_112966.1 identified by match to protein family HMM PF01618 YP_112967.1 identified by match to protein family HMM PF01618 YP_112968.1 identified by similarity to SP:Q05606; match to protein family HMM PF02472 YP_112969.1 identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352 YP_112970.1 identified by similarity to OMNI:NTL03PA03268; match to protein family HMM PF00593 YP_112971.1 identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352 YP_112972.1 identified by similarity to OMNI:NTL03PA00199; match to protein family HMM PF01618 YP_112973.1 identified by similarity to SP:P05829; match to protein family HMM PF02472 YP_112977.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_112978.1 identified by similarity to OMNI:DR0505; match to protein family HMM PF00149; match to protein family HMM PF02872 YP_112979.1 identified by similarity to SP:P37278; match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_112980.1 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_112981.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525 YP_112982.1 identified by match to protein family HMM PF00672 YP_112983.1 identified by match to protein family HMM PF01656 YP_112986.1 identified by similarity to OMNI:VCA0960; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_112990.1 identified by similarity to GP:1518927; match to protein family HMM PF00037 YP_112991.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00571; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_112992.2 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP YP_112993.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole YP_112994.1 identified by similarity to SP:P52086; match to protein family HMM PF00300 YP_112995.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole YP_112996.1 identified by match to protein family HMM PF01841 YP_112997.1 identified by similarity to OMNI:NTL03PA02874; match to protein family HMM PF01882 YP_112998.1 identified by similarity to GP:18892502 YP_113001.1 identified by match to protein family HMM PF02366 YP_113002.1 identified by similarity to SP:P54420; match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_113003.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614 YP_113004.1 identified by similarity to OMNI:VCA0776; match to protein family HMM PF03746 YP_113005.1 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724 YP_113006.1 identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370 YP_113008.1 identified by similarity to GP:27348307 YP_113009.1 identified by match to protein family HMM PF00248 YP_113010.1 identified by similarity to OMNI:PSPTO5190 YP_113014.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836 YP_113015.1 identified by similarity to GP:4378852 YP_113016.1 identified by similarity to SP:Q47142 YP_113017.1 identified by similarity to OMNI:NTL03PA04657; match to protein family HMM TIGR01777 YP_113018.1 identified by similarity to SP:P43335; match to protein family HMM PF01329 YP_113019.1 identified by similarity to OMNI:NTL01SMA00697; match to protein family HMM PF07298 YP_113020.1 identified by similarity to OMNI:NTL03PA04177; match to protein family HMM PF04828 YP_113022.1 identified by similarity to OMNI:NTL03PA00821; match to protein family HMM PF01844 YP_113023.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_113026.1 identified by similarity to SP:Q49135; match to protein family HMM PF04961 YP_113027.1 identified by similarity to SP:P55818 YP_113028.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_113029.1 identified by similarity to SP:P22250; match to protein family HMM PF00749; match to protein family HMM TIGR00464 YP_113030.1 identified by similarity to SP:P50974; match to protein family HMM PF00361; match to protein family HMM TIGR01972 YP_113031.1 identified by similarity to OMNI:NTL01AA00598 YP_113032.1 identified by similarity to GP:17221967; match to protein family HMM PF00361; match to protein family HMM PF00662 YP_113033.1 identified by similarity to SP:P31978; match to protein family HMM PF00361; match to protein family HMM TIGR01972 YP_113034.1 identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972 YP_113035.1 identified by similarity to SP:P23869; match to protein family HMM PF00160 YP_113036.1 identified by similarity to SP:P18274; match to protein family HMM PF01258 YP_113037.1 identified by similarity to SP:P96551; match to protein family HMM PF00749 YP_113038.1 identified by similarity to GP:1001228; match to protein family HMM PF00293 YP_113040.1 identified by similarity to OMNI:NTL01ST1808; match to protein family HMM PF05779 YP_113042.1 identified by similarity to SP:P45523; match to protein family HMM PF00254 YP_113043.1 identified by similarity to GP:3659895 YP_113045.1 identified by similarity to OMNI:NTL02SC1751; match to protein family HMM PF00596 YP_113046.1 identified by match to protein family HMM PF02517 YP_113047.1 identified by match to protein family HMM PF00254; match to protein family HMM PF05698 YP_113048.2 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_113049.1 binds and unfolds substrates as part of the ClpXP protease YP_113050.1 identified by similarity to SP:P08177; match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763 YP_113051.1 identified by similarity to SP:P02341; match to protein family HMM PF00216 YP_113052.1 identified by similarity to SP:P77241; match to protein family HMM PF00639 YP_113056.1 identified by match to protein family HMM PF03193; match to protein family HMM TIGR00157 YP_113057.1 identified by match to protein family HMM PF01435 YP_113058.1 3'-5' exoribonuclease specific for small oligoribonuclotides YP_113059.1 identified by similarity to OMNI:CC1055 YP_113060.1 identified by match to protein family HMM PF00534 YP_113061.1 identified by similarity to SP:P54420; match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_113063.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_113064.1 identified by similarity to SP:P31801; match to protein family HMM PF01699 YP_113066.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_113067.1 identified by similarity to GP:9950157; match to protein family HMM PF00849; match to protein family HMM TIGR00093 YP_113068.1 identified by similarity to SP:P33635; match to protein family HMM PF00588 YP_113069.1 identified by match to protein family HMM PF01555; match to protein family HMM PF04480 YP_113070.1 identified by similarity to OMNI:NTL01TV1471; match to protein family HMM PF04851 YP_113072.1 identified by similarity to GP:9107638; match to protein family HMM PF00754 YP_113073.1 identified by similarity to OMNI:NTL03PA05233; match to protein family HMM PF00529 YP_113074.1 identified by similarity to OMNI:NTL03PA05232; match to protein family HMM PF00005; match to protein family HMM PF01061 YP_113076.1 identified by similarity to SP:P31993; match to protein family HMM PF01061 YP_113077.1 identified by similarity to OMNI:NTL01AT2375 YP_113078.1 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149 YP_113079.1 identified by similarity to OMNI:NTL03PA04715; match to protein family HMM PF04214 YP_113080.1 identified by similarity to SP:P46880; match to protein family HMM PF00480; match to protein family HMM PF02685; match to protein family HMM TIGR00749 YP_113081.1 identified by similarity to OMNI:NTL01SMB01173 YP_113082.1 identified by similarity to SP:P17556; match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518 YP_113084.1 identified by similarity to SP:P36223; match to protein family HMM PF01842; match to protein family HMM PF01909; match to protein family HMM PF01966; match to protein family HMM TIGR01693 YP_113085.1 identified by similarity to SP:P07906; match to protein family HMM PF00557; match to protein family HMM TIGR00500 YP_113086.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_113087.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_113088.1 Catalyzes the phosphorylation of UMP to UDP YP_113089.1 identified by similarity to SP:P16174; match to protein family HMM PF01765; match to protein family HMM TIGR00496 YP_113090.1 identified by similarity to SP:Q47675; match to protein family HMM PF01255; match to protein family HMM TIGR00055 YP_113091.1 identified by similarity to SP:P06466; match to protein family HMM PF01148 YP_113092.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_113093.1 identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_113094.1 identified by similarity to SP:P21892 YP_113095.1 This protein performs the mismatch recognition step during the DNA repair process YP_113096.1 identified by similarity to OMNI:MT3577; match to protein family HMM PF00190 YP_113097.1 identified by similarity to OMNI:NTL01SS01176; match to protein family HMM PF01724 YP_113099.1 identified by match to protein family HMM PF00571 YP_113100.1 identified by similarity to SP:P09168; match to protein family HMM PF01035; match to protein family HMM TIGR00589 YP_113101.1 identified by similarity to GP:17428765; match to protein family HMM PF02696 YP_113102.1 identified by similarity to GP:1754625; match to protein family HMM PF00355 YP_113104.1 identified by similarity to GP:619066; match to protein family HMM PF00072; match to protein family HMM PF03861 YP_113105.1 identified by similarity to SP:P38043 YP_113106.1 identified by similarity to SP:Q06457; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04324; match to protein family HMM PF04879 YP_113107.1 identified by similarity to SP:P42436; match to protein family HMM PF00355 YP_113108.1 identified by similarity to SP:P42435; match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324 YP_113109.1 identified by similarity to GP:4557191; match to protein family HMM PF00069; match to protein family HMM PF00481 YP_113110.1 identified by similarity to SP:P46907; match to protein family HMM PF07690 YP_113112.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_113113.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_113114.2 identified by similarity to SP:P77434; match to protein family HMM PF00155 YP_113115.1 identified by similarity to GP:4545244; match to protein family HMM PF00483 YP_113116.1 identified by similarity to GP:4545243 YP_113117.1 identified by similarity to OMNI:PSPTO0554; match to protein family HMM PF04453 YP_113118.1 identified by similarity to SP:P21202; match to protein family HMM PF00639 YP_113119.1 identified by similarity to SP:P19624; match to protein family HMM PF04166; match to protein family HMM TIGR00557 YP_113120.1 identified by match to protein family HMM PF00398; match to protein family HMM TIGR00755 YP_113121.1 identified by similarity to SP:P02937 YP_113122.1 identified by similarity to OMNI:NTL03PA03756; match to protein family HMM PF03734 YP_113123.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate YP_113124.1 identified by similarity to OMNI:NTL01SS02055 YP_113125.1 identified by match to protein family HMM PF00005 YP_113126.1 catalyzes the oxidation of malate to oxaloacetate YP_113127.1 identified by similarity to GP:2935549; match to protein family HMM PF00403 YP_113128.1 identified by similarity to SP:Q56623 YP_113129.1 identified by similarity to GP:6690125; match to protein family HMM PF00534 YP_113131.1 identified by similarity to GP:1245347; match to protein family HMM PF03062 YP_113134.1 identified by match to protein family HMM PF00534 YP_113135.1 identified by match to protein family HMM PF00535 YP_113136.1 identified by match to protein family HMM PF00535 YP_113137.1 identified by match to protein family HMM PF00535 YP_113138.1 identified by match to protein family HMM PF00535 YP_113139.1 identified by similarity to GP:11641086 YP_113140.1 identified by similarity to GP:1890598 YP_113141.1 identified by similarity to GP:15025336; match to protein family HMM PF00005 YP_113142.1 identified by similarity to OMNI:NTL01SS00318; match to protein family HMM PF01061 YP_113143.1 identified by similarity to SP:P21893; match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_113144.1 identified by similarity to SP:P55882 YP_113146.1 identified by match to protein family HMM PF01618 YP_113147.1 identified by match to protein family HMM PF02472 YP_113148.1 identified by similarity to SP:P27300; match to protein family HMM PF02606; match to protein family HMM TIGR00682 YP_113149.1 identified by similarity to OMNI:VC1876; match to protein family HMM PF03966 YP_113150.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_113151.1 identified by similarity to SP:P76631 YP_113152.1 identified by similarity to OMNI:NTL01SM02683 YP_113153.1 identified by similarity to OMNI:NTL01XF00566; match to protein family HMM PF04366 YP_113154.1 identified by match to protein family HMM PF00724 YP_113155.1 identified by similarity to OMNI:NTL01HP01126 YP_113156.1 identified by similarity to OMNI:NTL02YP0740 YP_113163.1 identified by similarity to GP:18893192; match to protein family HMM PF02647; match to protein family HMM TIGR01573 YP_113164.1 identified by match to protein family HMM PF01867; match to protein family HMM TIGR00287 YP_113165.1 identified by similarity to OMNI:NTL01SPL1235; match to protein family HMM TIGR00372 YP_113166.1 identified by similarity to SP:Q9X137 YP_113167.1 identified by similarity to OMNI:NTL01SPL1236; match to protein family HMM PF05107; match to protein family HMM TIGR01595 YP_113168.1 identified by match to protein family HMM TIGR01863 YP_113169.1 identified by match to protein family HMM TIGR01876 YP_113170.1 identified by similarity to OMNI:NTL01BH0337; match to protein family HMM PF00270; match to protein family HMM TIGR01587 YP_113172.1 identified by similarity to GP:17135534; match to protein family HMM PF05899 YP_113173.1 identified by match to protein family HMM PF00753 YP_113174.1 identified by similarity to SP:P75959; match to protein family HMM PF00480 YP_113175.1 identified by similarity to SP:P77406; match to protein family HMM PF01594 YP_113176.1 identified by similarity to OMNI:NTL03PA03919; match to protein family HMM PF02562 YP_113177.1 identified by similarity to GP:17428331; match to protein family HMM PF00578 YP_113178.1 identified by similarity to SP:P23483 YP_113179.1 identified by similarity to SP:P31054; match to protein family HMM PF02673; match to protein family HMM TIGR00753 YP_113180.1 identified by similarity to SP:P09548; match to protein family HMM PF00597 YP_113181.1 identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352 YP_113182.1 identified by similarity to OMNI:NTL03PA00199; match to protein family HMM PF01618 YP_113183.1 identified by similarity to OMNI:NTL03PA00200; match to protein family HMM PF02472 YP_113184.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_113186.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_113187.1 identified by similarity to SP:P04790; match to protein family HMM PF00121; match to protein family HMM TIGR00419 YP_113188.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_113190.1 identified by similarity to GP:10312143; match to protein family HMM PF06114 YP_113192.1 identified by similarity to SP:P19675; match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449 YP_113193.1 identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739 YP_113194.2 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_113195.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_113196.1 identified by similarity to GP:3462874; match to protein family HMM PF03734 YP_113197.1 identified by similarity to SP:P58039; match to protein family HMM PF03692 YP_113198.1 identified by match to protein family HMM PF01230 YP_113199.1 identified by similarity to SP:P21516; match to protein family HMM PF02547; match to protein family HMM TIGR00113 YP_113201.1 identified by similarity to SP:P07648; match to protein family HMM PF04257; match to protein family HMM TIGR01450 YP_113202.1 identified by similarity to SP:P08394; match to protein family HMM PF00580; match to protein family HMM TIGR00609 YP_113203.1 identified by similarity to GP:16504071; match to protein family HMM TIGR01447 YP_113204.1 identified by similarity to SP:P00955; match to protein family HMM PF00587; match to protein family HMM PF02824; match to protein family HMM PF03129; match to protein family HMM TIGR00418 YP_113205.1 identified by similarity to SP:P07085; match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_113206.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_113207.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_113208.1 identified by similarity to SP:P07395; match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472 YP_113209.1 identified by similarity to SP:P06984; match to protein family HMM PF00216; match to protein family HMM TIGR00987 YP_113210.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_113211.1 involved in methylation of ribosomal protein L3 YP_113212.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_113213.1 identified by similarity to SP:Q47142; match to protein family HMM PF03825; match to protein family HMM PF07690 YP_113214.1 identified by similarity to GP:1848058 YP_113215.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_113216.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_113217.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_113218.1 identified by similarity to GP:17132891; match to protein family HMM PF00535 YP_113220.1 identified by similarity to OMNI:NTL03PA02230 YP_113221.1 identified by similarity to OMNI:VC2742; match to protein family HMM PF03631; match to protein family HMM TIGR00765 YP_113222.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA YP_113223.1 identified by similarity to SP:O29440; match to protein family HMM PF00708 YP_113224.1 identified by similarity to GP:6580646 YP_113225.1 identified by match to protein family HMM PF01814 YP_113227.1 identified by similarity to GP:17430383 YP_113228.1 identified by match to protein family HMM PF00324 YP_113229.1 identified by similarity to SP:Q07705; match to protein family HMM PF00075 YP_113230.1 identified by similarity to SP:P03007; match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01406 YP_113232.1 identified by match to protein family HMM PF01609 YP_113233.1 identified by match to protein family HMM PF01360; match to protein family HMM PF01494 YP_113234.1 identified by similarity to GP:17135269 YP_113235.1 identified by match to protein family HMM PF00440 YP_113239.1 identified by match to protein family HMM PF00665 YP_113240.1 identified by match to protein family HMM PF00665 YP_113241.1 identified by match to protein family HMM PF02310; match to protein family HMM PF04055 YP_113242.1 identified by similarity to OMNI:NTL03PA04466; match to protein family HMM PF03668 YP_113243.1 identified by similarity to GP:6141572; match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_113244.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_113245.1 identified by similarity to SP:P45073; match to protein family HMM PF00005 YP_113246.1 identified by similarity to OMNI:NMB0355; match to protein family HMM PF03968 YP_113247.1 identified by similarity to OMNI:NTL03PA04460; match to protein family HMM PF06835 YP_113248.1 identified by similarity to SP:P45396; match to protein family HMM TIGR01662; match to protein family HMM TIGR01670 YP_113249.1 identified by similarity to SP:P45395; match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 YP_113250.1 identified by similarity to SP:Q55752; match to protein family HMM PF03330; match to protein family HMM TIGR00413 YP_113251.1 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049 YP_113252.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_113256.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_113257.1 identified by similarity to GP:17130435 YP_113258.1 identified by match to protein family HMM PF01523 YP_113261.1 identified by similarity to SP:P30743; match to protein family HMM PF00893 YP_113262.1 identified by similarity to OMNI:CC2267 YP_113263.1 identified by similarity to SP:P16022; match to protein family HMM PF00111 YP_113265.1 identified by similarity to SP:P22759; match to protein family HMM PF00210; match to protein family HMM TIGR00754 YP_113266.1 identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_113267.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR01199; match to protein family HMM TIGR01817 YP_113270.1 identified by similarity to GP:10505056; match to protein family HMM TIGR00426 YP_113271.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_113272.1 identified by similarity to SP:P52647; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM PF02775; match to protein family HMM TIGR02176 YP_113273.1 unknown function YP_113274.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_113275.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_113276.1 identified by similarity to SP:P04825; match to protein family HMM PF01433 YP_113277.1 identified by similarity to OMNI:MT1911; match to protein family HMM PF00107 YP_113279.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_113280.1 identified by similarity to SP:P29905; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_113281.1 identified by similarity to SP:P16027; match to protein family HMM PF01011 YP_113282.1 identified by similarity to GP:7258335 YP_113283.1 identified by similarity to SP:P14774; match to protein family HMM PF00034 YP_113284.1 identified by similarity to SP:P14775; match to protein family HMM PF02315 YP_113285.1 identified by similarity to SP:P29901 YP_113286.1 identified by similarity to GP:19917169 YP_113287.1 identified by similarity to GP:773180 YP_113288.1 identified by similarity to GP:1164996 YP_113289.1 identified by similarity to GP:2828246 YP_113290.1 identified by similarity to GP:773183 YP_113291.1 identified by similarity to GP:773184 YP_113292.1 identified by similarity to OMNI:AF2308 YP_113293.1 identified by similarity to SP:P80415; match to protein family HMM PF00313 YP_113294.1 identified by similarity to GP:2624328; match to protein family HMM PF00076 YP_113295.1 catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide YP_113296.1 identified by similarity to OMNI:NTL03PA00360 YP_113297.1 identified by match to protein family HMM PF05951; match to protein family HMM TIGR01409 YP_113298.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR01691 YP_113299.1 identified by match to protein family HMM PF03079 YP_113300.1 catalyzes the formation of diketo methylthiopentyl phosphate from methylribulose phosphate in the methionine salvage pathway YP_113301.1 identified by similarity to GP:9947507 YP_113305.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_113306.1 identified by similarity to OMNI:NMB1963 YP_113307.1 identified by match to protein family HMM PF05425 YP_113308.1 identified by similarity to OMNI:NTL01ST1872 YP_113309.1 identified by similarity to SP:Q58131; match to protein family HMM PF00202 YP_113310.1 identified by similarity to GP:3164083 YP_113311.1 identified by match to protein family HMM PF01048 YP_113312.1 identified by similarity to GP:3164082; match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787 YP_113313.1 identified by similarity to GP:3164081; match to protein family HMM PF00494 YP_113314.1 identified by match to protein family HMM PF04055 YP_113315.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_113316.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_113317.1 identified by similarity to SP:P45204; match to protein family HMM PF00348 YP_113318.1 identified by similarity to SP:P22938; match to protein family HMM PF02609; match to protein family HMM TIGR01280 YP_113319.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_113320.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_113322.1 identified by match to protein family HMM PF00665; match to protein family HMM PF01527 YP_113323.1 identified by match to protein family HMM PF00165 YP_113324.1 identified by similarity to GP:2828248 YP_113325.1 identified by similarity to GP:15980550; match to protein family HMM PF01966 YP_113327.1 identified by match to protein family HMM PF01739 YP_113329.1 identified by similarity to SP:P18769; match to protein family HMM PF00072; match to protein family HMM PF01627; match to protein family HMM PF02518 YP_113330.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_113331.1 identified by match to protein family HMM PF00072; match to protein family HMM PF07228 YP_113332.1 identified by similarity to OMNI:NTL01SMA01148; match to protein family HMM PF02661 YP_113333.1 identified by match to protein family HMM PF01420 YP_338556.1 identified by similarity to SP:P44014 YP_113334.1 identified by match to protein family HMM PF01541; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348 YP_113336.1 identified by similarity to SP:P30860 YP_113337.1 identified by similarity to SP:P52035; match to protein family HMM PF00255 YP_113338.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_113339.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme YP_113340.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_113343.1 identified by similarity to SP:Q10530; match to protein family HMM PF00285; match to protein family HMM TIGR01798 YP_113344.1 molecular chaperone YP_113345.1 identified by match to protein family HMM PF01699 YP_113346.1 identified by similarity to SP:P28691; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241 YP_113347.1 identified by match to protein family HMM PF05362 YP_113348.1 Required for efficient pilin antigenic variation YP_113349.1 identified by similarity to OMNI:NTL03PA02854; match to protein family HMM PF03734 YP_113350.1 identified by similarity to GP:17428249; match to protein family HMM PF04362 YP_113351.1 identified by similarity to SP:P17802; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084 YP_113352.1 identified by similarity to SP:P19572; match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_113353.1 identified by similarity to SP:P08885; match to protein family HMM PF01678; match to protein family HMM TIGR00652 YP_113354.1 identified by similarity to OMNI:NTL03PA05280; match to protein family HMM PF04340 YP_113355.1 identified by similarity to SP:P22885; match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02224 YP_113356.1 identified by similarity to OMNI:NTL03PA04843 YP_113357.1 identified by similarity to OMNI:NTL03PA01616 YP_113358.1 identified by similarity to OMNI:VC2536; match to protein family HMM PF04751 YP_113359.1 identified by similarity to OMNI:NTL03PA04030; match to protein family HMM PF06167 YP_113360.1 identified by similarity to GP:18145308; match to protein family HMM PF04055 YP_113361.1 identified by match to protein family HMM PF01713 YP_113362.1 identified by similarity to GP:17131131 YP_113363.1 identified by similarity to SP:P23861; match to protein family HMM PF01547 YP_113364.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component YP_113365.1 identified by similarity to SP:P23860; match to protein family HMM PF00528 YP_113366.1 functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase YP_113368.1 identified by similarity to SP:P77234 YP_113369.1 identified by match to protein family HMM PF00082; match to protein family HMM PF05922 YP_113372.1 identified by similarity to OMNI:NTL02ML2446 YP_113373.1 identified by similarity to OMNI:NTL03PA00106; match to protein family HMM PF00034; match to protein family HMM PF00116; match to protein family HMM PF02790 YP_113374.1 identified by similarity to SP:P31833; match to protein family HMM PF00115 YP_113376.1 involved in the insertion of copper into subunit I of cytochrome C oxidase YP_113377.1 identified by similarity to OMNI:NTL03PA00109; match to protein family HMM PF00510 YP_113378.1 identified by match to protein family HMM PF01609 YP_113379.1 identified by similarity to GP:18144127 YP_113380.1 identified by similarity to GP:18159248; match to protein family HMM PF04055 YP_113381.1 identified by similarity to GP:18144126 YP_113383.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_113385.1 identified by similarity to SP:P06997; match to protein family HMM PF01547; match to protein family HMM TIGR00971 YP_113387.1 identified by match to protein family HMM PF00953 YP_113388.1 identified by match to protein family HMM PF02719 YP_113389.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_113390.1 identified by similarity to SP:P02363; match to protein family HMM PF00380 YP_113391.1 identified by match to protein family HMM PF01527 YP_113392.1 identified by match to protein family HMM PF00665 YP_113393.1 identified by match to protein family HMM PF00004 YP_113394.1 identified by similarity to OMNI:NTL01SMB00214 YP_113395.1 identified by similarity to GP:13786684; match to protein family HMM PF00484 YP_113396.1 identified by similarity to GP:17129730; match to protein family HMM PF06080 YP_113397.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_113398.1 Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides YP_113399.1 identified by similarity to GP:19483795 YP_113401.1 identified by similarity to GP:17427440 YP_113402.1 identified by similarity to GP:17427439 YP_113403.1 identified by match to protein family HMM PF01522 YP_113404.1 identified by similarity to GP:6959523 YP_113407.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_113408.1 identified by similarity to GP:17427436 YP_113409.1 identified by similarity to SP:P21773 YP_113410.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_113411.1 identified by similarity to OMNI:NTL01SS00413 YP_338557.1 identified by match to protein family HMM TIGR01873 YP_113413.1 identified by similarity to GP:16504011; match to protein family HMM TIGR00287 YP_113415.1 identified by similarity to OMNI:NTL01EC02697; match to protein family HMM TIGR01868 YP_113416.1 identified by similarity to GP:16504014; match to protein family HMM TIGR01869 YP_113417.1 CT1973 family; identified by match to protein family HMM TIGR02548 YP_113418.1 CT1972 family; identified by match to protein family HMM TIGR02547 YP_113419.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR01587 YP_113420.1 identified by similarity to SP:P19934 YP_113421.1 identified by similarity to GP:15979130; match to protein family HMM PF00034 YP_113422.1 identified by match to protein family HMM PF01301 YP_113423.1 identified by similarity to PIR:JE0181; match to protein family HMM PF00128 YP_113426.1 identified by similarity to SP:Q49116 YP_113428.1 identified by match to protein family HMM PF00034 YP_113429.1 identified by similarity to SP:P39665 YP_113430.1 identified by match to protein family HMM PF01425 YP_113432.1 identified by similarity to SP:P33929; match to protein family HMM PF01578; match to protein family HMM TIGR01191 YP_113433.1 identified by match to protein family HMM PF03379; match to protein family HMM TIGR01190 YP_113434.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01189 YP_113436.1 identified by similarity to SP:Q50925 YP_113437.1 identified by similarity to SP:P22037; match to protein family HMM PF02308 YP_113439.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_113440.1 identified by similarity to OMNI:NTL01BH3878; match to protein family HMM PF00903 YP_113441.1 catalyzes the removal of amino acids from the N termini of peptides YP_113443.1 identified by match to protein family HMM PF01757 YP_113444.1 identified by similarity to SP:P27299; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02203 YP_113446.1 identified by similarity to SP:P07460; match to protein family HMM PF00549; match to protein family HMM PF02222; match to protein family HMM TIGR01016 YP_113447.1 identified by similarity to SP:P07459; match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019 YP_113448.1 identified by similarity to SP:Q03638; match to protein family HMM PF00795; match to protein family HMM PF02540; match to protein family HMM TIGR00552 YP_113449.1 identified by similarity to OMNI:DRA0055; match to protein family HMM PF00294 YP_113450.1 identified by similarity to SP:Q50985; match to protein family HMM PF03696 YP_113451.1 identified by similarity to SP:P33643; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_113452.1 identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726 YP_113453.1 identified by similarity to GP:17429246 YP_113455.1 identified by similarity to SP:P30016; match to protein family HMM PF02705 YP_113456.1 identified by match to protein family HMM PF00543 YP_113457.1 identified by match to protein family HMM TIGR00914 YP_113458.1 identified by similarity to SP:P77239 YP_113459.1 identified by match to protein family HMM PF01609 YP_113461.1 identified by match to protein family HMM PF00011 YP_113462.1 identified by similarity to GP:19914454 YP_113463.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_113464.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_113465.1 identified by similarity to GP:17942398; match to protein family HMM PF00355 YP_113466.1 identified by similarity to SP:P77310; match to protein family HMM PF01592; match to protein family HMM TIGR01994 YP_113467.1 identified by similarity to SP:P77444; match to protein family HMM PF00266; match to protein family HMM TIGR01979 YP_113468.1 identified by similarity to SP:P77689; match to protein family HMM PF01458; match to protein family HMM TIGR01981 YP_113469.1 identified by similarity to OMNI:NTL01ST1368; match to protein family HMM PF00005; match to protein family HMM TIGR01978 YP_113470.1 with SufCD activates cysteine desulfurase SufS YP_113471.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_113472.1 identified by similarity to GP:17428164 YP_113473.1 identified by similarity to SP:P23234; match to protein family HMM PF00205; match to protein family HMM PF02776 YP_113474.1 identified by similarity to OMNI:NTL01PA01213 YP_113475.1 identified by similarity to SP:P76145 YP_113476.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_113477.1 identified by similarity to GP:12323420 YP_113478.1 identified by similarity to GP:17135359 YP_113479.1 identified by match to protein family HMM PF02798 YP_113480.1 identified by similarity to OMNI:NTL02ML0419; match to protein family HMM PF01471 YP_113481.1 identified by similarity to SP:P37278; match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_113482.1 identified by match to protein family HMM PF01384 YP_113483.1 identified by similarity to OMNI:NTL01AA00691; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01553 YP_113485.1 identified by similarity to GP:18144241 YP_113486.1 identified by similarity to GP:1666299; match to protein family HMM PF00076 YP_113487.1 identified by similarity to GP:17427549; match to protein family HMM PF00270; match to protein family HMM PF00271 YP_113488.1 identified by similarity to OMNI:NT01MC2863 YP_113489.1 identified by similarity to GP:17427439 YP_113492.1 identified by similarity to SP:O05616; match to protein family HMM PF00355 YP_113494.1 identified by similarity to OMNI:NTL02SC5233; match to protein family HMM PF03734 YP_113495.1 identified by similarity to OMNI:NT01MC4376 YP_113496.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_113497.1 identified by match to protein family HMM PF00155 YP_113498.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_113499.1 identified by match to protein family HMM PF00578 YP_113503.1 identified by similarity to OMNI:CC1782; match to protein family HMM PF03929 YP_113504.1 identified by similarity to SP:P08466; match to protein family HMM PF01223 YP_113506.1 identified by similarity to SP:P80053; match to protein family HMM PF00208; match to protein family HMM PF02812 YP_113508.1 identified by similarity to SP:P46837; match to protein family HMM PF00575 YP_113509.1 identified by similarity to OMNI:CC2083 YP_113510.1 identified by similarity to OMNI:NMB0869; match to protein family HMM PF01564 YP_113512.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair. YP_113514.1 identified by similarity to SP:P37147; match to protein family HMM PF04186 YP_113515.1 identified by similarity to SP:P36654; match to protein family HMM PF03091 YP_113516.1 identified by similarity to SP:P36655; match to protein family HMM PF02683 YP_113519.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_113520.1 identified by similarity to SP:P02905; match to protein family HMM PF00364; match to protein family HMM TIGR00531 YP_113521.1 identified by similarity to SP:P24182; match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514 YP_113522.1 identified by similarity to SP:P28637; match to protein family HMM PF06325; match to protein family HMM TIGR00406 YP_113523.1 identified by similarity to OMNI:NTL03PA04852; match to protein family HMM TIGR02098 YP_113524.1 identified by similarity to OMNI:NTL03PA00355 YP_113525.1 identified by similarity to SP:P37186; match to protein family HMM TIGR00536 YP_113526.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_113527.1 identified by similarity to SP:P13580; match to protein family HMM PF00745; match to protein family HMM PF05200; match to protein family HMM PF05201; match to protein family HMM TIGR01035 YP_113528.1 identified by match to protein family HMM PF00515 YP_113529.1 identified by similarity to SP:P24208; match to protein family HMM PF03550; match to protein family HMM TIGR00548 YP_113530.1 identified by similarity to SP:P24209; match to protein family HMM PF00288; match to protein family HMM TIGR00154 YP_113531.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_113532.1 identified by similarity to OMNI:NTL03PA04672; match to protein family HMM PF01386; match to protein family HMM TIGR00731 YP_113533.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_113534.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_113535.1 identified by similarity to SP:P16920; match to protein family HMM PF00584; match to protein family HMM TIGR00964 YP_113536.1 identified by similarity to SP:P16921; match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922 YP_113537.1 identified by similarity to SP:P02409; match to protein family HMM PF00298; match to protein family HMM PF03946; match to protein family HMM TIGR01632 YP_113538.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_113539.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_113540.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_113541.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_113542.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_113543.1 identified by similarity to SP:Q52369; match to protein family HMM PF00034 YP_113544.1 identified by similarity to OMNI:NTL03PA00458; match to protein family HMM PF05618 YP_113545.1 identified by similarity to OMNI:NTL03PA01768 YP_113546.1 identified by similarity to OMNI:NTL03PA01767; match to protein family HMM TIGR02291 YP_113547.1 identified by similarity to OMNI:CC0290; match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_113548.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_113549.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_113550.1 identified by similarity to SP:P07656; match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_113551.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_113552.1 fusion of thiS and thiG; functions in thiamine (vitamin B1) biosynthesis YP_113553.1 identified by similarity to SP:O52538; match to protein family HMM PF00194 YP_113554.1 identified by similarity to GP:2293232 YP_113558.1 identified by similarity to OMNI:NTL03PA01873 YP_113561.1 identified by match to protein family HMM PF01609 YP_113563.1 identified by similarity to SP:P46323; match to protein family HMM PF00994 YP_113564.1 identified by similarity to SP:O27435; match to protein family HMM PF03547 YP_113565.1 identified by similarity to SP:Q59654; match to protein family HMM PF00215; match to protein family HMM TIGR01740 YP_113566.1 identified by similarity to OMNI:NTL03PA01548 YP_113567.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_113568.1 identified by match to protein family HMM PF02421; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; match to protein family HMM TIGR00650 YP_113569.1 identified by similarity to OMNI:DR1220; match to protein family HMM PF04023 YP_113570.1 catalyzes ATP + L-citrulline + L-aspartate = AMP + diphosphate + (N(omega)-L-arginino)succinate YP_113571.1 identified by match to protein family HMM PF00394 YP_113572.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_113573.1 identified by match to protein family HMM PF00753 YP_113574.1 identified by similarity to GP:17133040; match to protein family HMM PF01925 YP_113575.1 identified by similarity to SP:Q09049; match to protein family HMM PF01654 YP_113576.1 identified by similarity to SP:P11027; match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_113577.1 identified by match to protein family HMM TIGR02106 YP_113578.1 identified by similarity to OMNI:NTL03PA02658 YP_113579.1 identified by match to protein family HMM PF03171 YP_113580.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans YP_113581.1 identified by similarity to GP:17429447; match to protein family HMM PF01925 YP_113583.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_113584.1 identified by similarity to SP:P31742; match to protein family HMM PF00437; match to protein family HMM PF05157 YP_113585.1 identified by similarity to SP:P31744; match to protein family HMM PF00482 YP_113586.1 identified by similarity to SP:Q00514; match to protein family HMM TIGR01710 YP_113587.1 identified by similarity to SP:P31736 YP_113588.1 identified by similarity to SP:P31738 YP_113589.1 identified by similarity to SP:P31740 YP_113591.1 identified by similarity to SP:P34027; match to protein family HMM PF05137 YP_113592.1 identified by similarity to GP:496290 YP_113593.1 identified by similarity to SP:P45758; match to protein family HMM PF00263; match to protein family HMM PF03958 YP_113594.1 identified by similarity to SP:P31773 YP_113595.1 identified by similarity to SP:P12996; match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433 YP_113596.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine YP_113597.1 identified by similarity to SP:P13001; match to protein family HMM PF00561; match to protein family HMM TIGR01738 YP_113598.1 identified by similarity to SP:O06898; match to protein family HMM TIGR02072 YP_113599.1 identified by similarity to SP:P13000; match to protein family HMM PF01656; match to protein family HMM TIGR00347 YP_113600.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521 YP_113601.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486 YP_113602.1 identified by similarity to GP:17131502 YP_113603.1 identified by similarity to SP:P24235; match to protein family HMM PF00953 YP_113604.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01458; match to protein family HMM TIGR01460 YP_113607.1 identified by similarity to GP:19918502; match to protein family HMM PF01058 YP_113608.1 identified by similarity to SP:P77329; match to protein family HMM PF00329; match to protein family HMM PF00346 YP_113609.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_113610.1 identified by similarity to SP:P77524 YP_113611.1 identified by similarity to GP:12744950; match to protein family HMM PF00146 YP_113612.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_113613.1 identified by similarity to GP:17132082; match to protein family HMM PF05685 YP_113615.1 identified by similarity to SP:O59256 YP_113616.1 identified by similarity to SP:P32054; match to protein family HMM TIGR01472 YP_113617.1 identified by similarity to SP:P32055 YP_113621.1 identified by similarity to GP:14028308; match to protein family HMM TIGR01444 YP_113622.1 identified by match to protein family HMM PF00534 YP_113624.1 identified by match to protein family HMM TIGR01444 YP_113626.1 identified by match to protein family HMM TIGR01444 YP_113627.1 identified by match to protein family HMM PF00535 YP_113628.1 identified by match to protein family HMM PF00534 YP_113629.1 identified by match to protein family HMM PF00534 YP_113631.1 identified by similarity to GP:1245347; match to protein family HMM PF03062 YP_113632.1 identified by similarity to SP:P55474; match to protein family HMM PF02543 YP_113634.1 identified by match to protein family HMM PF01370 YP_113635.1 identified by similarity to GP:17132272; match to protein family HMM PF00535 YP_113636.1 identified by similarity to SP:P32057; match to protein family HMM PF00534 YP_113639.1 identified by similarity to OMNI:VC0931; match to protein family HMM PF04932 YP_113640.1 identified by similarity to OMNI:VC0935 YP_113641.1 identified by match to protein family HMM PF02563 YP_113642.1 This gene is interrupted by an IS element.identified by similarity to OMNI:NTL01SS00315; match to protein family HMM PF02706 YP_113643.1 identified by match to protein family HMM PF01609 YP_113644.1 This gene is interrupted by an IS element.identified by similarity to SP:Q45409 YP_113645.1 identified by similarity to GP:12006001 YP_113646.1 identified by similarity to SP:P14788; match to protein family HMM PF00005; match to protein family HMM TIGR00968 YP_113647.1 identified by similarity to SP:P16702; match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140 YP_113648.1 identified by similarity to SP:P16701; match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139 YP_113649.1 identified by similarity to GP:9478255 YP_113650.1 identified by similarity to OMNI:NTL03PA02482; match to protein family HMM PF00034 YP_113652.1 identified by match to protein family HMM PF00034 YP_113653.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_113654.1 identified by similarity to GP:13620194 YP_113656.1 identified by match to protein family HMM PF02630 YP_113657.1 identified by similarity to OMNI:DR1885 YP_113658.1 identified by similarity to SP:P40983 YP_113659.1 identified by similarity to SP:P22869; match to protein family HMM PF02332 YP_113660.1 identified by similarity to SP:P18798; match to protein family HMM PF02332 YP_113661.1 identified by similarity to SP:P18797; match to protein family HMM PF02406 YP_113662.1 identified by match to protein family HMM PF01609 YP_113663.1 identified by similarity to SP:P11987; match to protein family HMM PF02964 YP_113665.1 identified by similarity to SP:P22868; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_113667.1 identified by similarity to SP:P45746; match to protein family HMM PF00118 YP_113668.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_113669.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_113670.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_113671.1 identified by similarity to SP:P36768; match to protein family HMM PF06865 YP_113672.1 identified by similarity to SP:P32174; match to protein family HMM TIGR01583 YP_113673.1 identified by similarity to SP:P32175; match to protein family HMM PF00037; match to protein family HMM TIGR01582 YP_113674.1 identified by similarity to SP:P32176; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR01553 YP_113675.1 identified by similarity to SP:P24206; match to protein family HMM PF01135; match to protein family HMM TIGR00080 YP_113676.1 catalyzes the conversion of terminal3'-phosphate of RNA to the 2',3'-cyclicphosphodiester YP_113677.1 identified by similarity to GP:19914532; match to protein family HMM PF00633; match to protein family HMM PF02231; match to protein family HMM PF02811 YP_113678.1 identified by similarity to OMNI:NMB0264; match to protein family HMM PF00005; match to protein family HMM PF00664 YP_113681.1 identified by match to protein family HMM PF07504 YP_113683.1 identified by match to protein family HMM PF00872 YP_113684.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_113685.1 identified by similarity to SP:P24239; match to protein family HMM PF02075; match to protein family HMM TIGR00228 YP_113686.1 identified by similarity to SP:P08576; match to protein family HMM PF01330; match to protein family HMM PF07499; match to protein family HMM TIGR00084 YP_113687.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_113688.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051 YP_113690.1 identified by similarity to SP:P05828; match to protein family HMM PF01618 YP_113691.1 identified by similarity to SP:P50599; match to protein family HMM PF02472 YP_113692.1 identified by similarity to SP:P50600; match to protein family HMM PF06519; match to protein family HMM TIGR01352 YP_113693.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA YP_113694.1 identified by match to protein family HMM PF00691 YP_113695.1 identified by similarity to OMNI:NTL03PA00975 YP_113696.1 identified by match to protein family HMM PF04055 YP_113697.1 identified by similarity to GP:5514781; match to protein family HMM PF06508; match to protein family HMM TIGR00364 YP_113698.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_113700.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_113701.1 identified by similarity to GP:24575128; match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01590; match to protein family HMM PF02801 YP_113702.1 identified by match to protein family HMM TIGR00914 YP_113703.1 identified by similarity to SP:P09550; match to protein family HMM PF02441; match to protein family HMM TIGR00421 YP_113704.1 identified by similarity to OMNI:NTL01AT1813 YP_113705.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_113706.1 identified by similarity to SP:Q58499 YP_113708.1 identified by match to protein family HMM PF00809 YP_113709.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM PF01739; match to protein family HMM PF03705; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_113710.1 identified by similarity to SP:P11537; match to protein family HMM PF00342 YP_113711.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_113712.1 identified by match to protein family HMM PF00300 YP_113713.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_113714.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_113715.2 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_113716.1 identified by similarity to SP:P27298; match to protein family HMM PF01432 YP_113717.1 identified by similarity to SP:P09947; match to protein family HMM PF00301 YP_113719.1 identified by similarity to GP:17427469; match to protein family HMM PF04280 YP_113720.1 identified by similarity to SP:P35160 YP_113721.1 identified by match to protein family HMM PF03653; match to protein family HMM TIGR00701 YP_113722.1 identified by similarity to GP:8246798 YP_113723.1 identified by match to protein family HMM PF00196 YP_113726.1 identified by similarity to SP:P29132; match to protein family HMM PF00106 YP_113727.1 identified by similarity to SP:P23843; match to protein family HMM PF00496 YP_113728.1 identified by similarity to SP:P26903; match to protein family HMM PF00528 YP_113729.1 identified by match to protein family HMM PF00528 YP_113730.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488 YP_113731.1 identified by similarity to OMNI:NTL03PA01808; match to protein family HMM PF00005 YP_113732.1 identified by similarity to OMNI:NTL01SMB00250; match to protein family HMM PF06803 YP_113733.1 identified by similarity to GP:9107113; match to protein family HMM PF01883 YP_113734.1 identified by match to protein family HMM PF00106 YP_113735.1 Involved in ubiquinone biosynthesis YP_113736.1 Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline YP_113737.1 identified by similarity to OMNI:NTL02ML6584; match to protein family HMM PF01594 YP_113738.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_113739.1 identified by similarity to SP:P02930; match to protein family HMM PF02321; match to protein family HMM TIGR01844 YP_113740.1 identified by similarity to OMNI:NTL01SMB00178 YP_113741.1 identified by similarity to OMNI:NTL01SMB00179; match to protein family HMM TIGR02276 YP_113742.1 identified by similarity to OMNI:NTL01SMB00184; match to protein family HMM PF00005 YP_113743.1 identified by match to protein family HMM PF01061 YP_113744.1 identified by similarity to SP:P55295; match to protein family HMM PF01370; match to protein family HMM TIGR01181 YP_113745.1 identified by similarity to SP:P55254; match to protein family HMM PF00483; match to protein family HMM TIGR01207 YP_113746.1 identified by similarity to GP:14090389; match to protein family HMM PF00908; match to protein family HMM TIGR01221 YP_113747.1 identified by similarity to SP:P37760; match to protein family HMM PF04321; match to protein family HMM TIGR01214 YP_113748.1 identified by similarity to SP:P10443; match to protein family HMM PF01336; match to protein family HMM PF02231; match to protein family HMM PF02811; match to protein family HMM TIGR00594 YP_113750.1 identified by match to protein family HMM PF01471; match to protein family HMM PF01510 YP_113753.1 identified by similarity to OMNI:NTL01SS03128 YP_113755.1 identified by similarity to OMNI:NTL02ML1264; match to protein family HMM PF00445 YP_113756.1 identified by similarity to SP:P11880; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143 YP_113758.1 identified by match to protein family HMM PF01520 YP_113759.1 identified by match to protein family HMM TIGR01730 YP_113760.1 identified by match to protein family HMM TIGR00914 YP_113761.1 identified by match to protein family HMM PF00543 YP_113762.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_113763.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196 YP_113764.1 identified by similarity to OMNI:NTL03PA04951; match to protein family HMM PF00037; match to protein family HMM TIGR00276 YP_113765.1 identified by similarity to SP:P39100; match to protein family HMM PF02798 YP_113766.1 identified by similarity to OMNI:VC1375 YP_113769.1 identified by similarity to SP:Q12178; match to protein family HMM PF00383 YP_113770.1 identified by similarity to GP:16502260; match to protein family HMM PF01027 YP_113771.1 identified by similarity to SP:P05055; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 YP_113772.1 identified by similarity to OMNI:VC0646; match to protein family HMM PF00312; match to protein family HMM TIGR00952 YP_113773.1 This gene is disrupted by an IS element. YP_113774.1 identified by match to protein family HMM PF01609 YP_113775.1 This gene is disrupted by an IS element.identified by similarity to SP:P09171; match to protein family HMM PF01509; match to protein family HMM TIGR00431 YP_113776.1 identified by similarity to SP:P09170; match to protein family HMM PF02033; match to protein family HMM TIGR00082 YP_113777.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_113778.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_113779.1 identified by similarity to GP:9951008; match to protein family HMM PF02576 YP_113780.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine YP_113781.1 identified by match to protein family HMM PF00152 YP_113782.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_113783.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00238 YP_113784.1 identified by similarity to GP:12659324; match to protein family HMM PF06189 YP_113787.1 identified by similarity to GP:18145688; match to protein family HMM PF01230 YP_113788.1 identified by similarity to SP:P12727; match to protein family HMM PF01751; match to protein family HMM PF02132; match to protein family HMM TIGR00615 YP_113789.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_113790.1 identified by similarity to SP:P06710; match to protein family HMM PF00004 YP_113792.1 identified by similarity to OMNI:NTL03PA01006; match to protein family HMM PF01435 YP_113793.1 identified by similarity to SP:O87896; match to protein family HMM PF02635 YP_113795.1 identified by similarity to GP:3228384; match to protein family HMM PF04077 YP_113796.1 identified by similarity to GP:3228385; match to protein family HMM PF04358 YP_113797.1 identified by similarity to SP:P26602; match to protein family HMM PF04345 YP_113798.1 identified by similarity to SP:P26601; match to protein family HMM PF01040; match to protein family HMM TIGR01474 YP_113799.1 identified by similarity to OMNI:NTL03PA03747; match to protein family HMM PF01578 YP_113800.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_113801.1 identified by similarity to SP:P06688; match to protein family HMM PF00376; match to protein family HMM TIGR02051 YP_113802.1 identified by similarity to SP:P94702; match to protein family HMM PF00070; match to protein family HMM PF00403; match to protein family HMM PF02852; match to protein family HMM TIGR02053 YP_113803.1 identified by similarity to SP:P24580 YP_113805.1 identified by similarity to OMNI:NTL01SM02930; match to protein family HMM PF00126 YP_113806.1 identified by match to protein family HMM PF00589 YP_113807.1 identified by match to protein family HMM PF01758 YP_113808.1 identified by similarity to SP:P29801; match to protein family HMM PF00361; match to protein family HMM TIGR01770 YP_113809.1 identified by similarity to SP:P31978; match to protein family HMM PF00361; match to protein family HMM TIGR01972 YP_113810.1 identified by similarity to SP:P33607; match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974 YP_113811.1 identified by similarity to SP:P33606; match to protein family HMM PF00420 YP_113812.1 identified by similarity to SP:P33605; match to protein family HMM PF00499 YP_113813.1 Catalyzes the transfer of electrons from NADH to quinone YP_113814.1 Catalyzes the transfer of electrons from NADH to quinone YP_113815.1 Catalyzes the transfer of electrons from NADH to quinone YP_113816.1 identified by similarity to SP:P31979; match to protein family HMM PF01512; match to protein family HMM TIGR01959 YP_113817.1 Catalyzes the transfer of electrons from NADH to quinone YP_113818.1 NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms YP_113819.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_113820.1 identified by similarity to SP:P33597; match to protein family HMM PF00507 YP_113821.1 identified by match to protein family HMM TIGR00915 YP_113822.1 identified by similarity to GP:19880979; match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_113823.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_113824.1 identified by similarity to OMNI:NTL03PA03804 YP_113825.1 identified by similarity to OMNI:NTL01SM00467; match to protein family HMM PF03692 YP_113827.1 identified by similarity to SP:P45535; match to protein family HMM PF00005 YP_113828.1 identified by match to protein family HMM PF00210; match to protein family HMM TIGR00754 YP_113829.1 identified by similarity to SP:P13655; match to protein family HMM PF04324 YP_113830.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_113831.1 identified by similarity to SP:P17117; match to protein family HMM PF00881 YP_113835.1 identified by similarity to SP:P37734; match to protein family HMM PF01547; match to protein family HMM TIGR01256 YP_113836.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256 YP_113837.1 identified by similarity to SP:P37731; match to protein family HMM PF00528; match to protein family HMM TIGR02141 YP_113838.1 identified by similarity to SP:P37732; match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM TIGR02142 YP_113839.1 identified by similarity to GP:14277844; match to protein family HMM PF03459; match to protein family HMM TIGR00638 YP_113841.1 metalloprotease YP_113843.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_113845.1 identified by similarity to SP:P45947; match to protein family HMM PF01451 YP_113846.1 identified by match to protein family HMM PF01022 YP_113847.1 identified by similarity to GP:3724147 YP_113848.1 identified by similarity to SP:P32177; match to protein family HMM PF02634; match to protein family HMM TIGR00129 YP_113849.1 identified by similarity to GP:17743211; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591 YP_113850.1 identified by similarity to GP:3724144; match to protein family HMM PF01512 YP_113851.1 catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor YP_113854.1 identified by match to protein family HMM PF00226 YP_113857.1 identified by match to protein family HMM PF02687 YP_113858.1 identified by similarity to OMNI:VCA0782; match to protein family HMM PF00005 YP_113859.1 identified by similarity to SP:Q07792; match to protein family HMM PF00657 YP_113860.1 identified by similarity to GP:19071499 YP_113861.1 identified by similarity to SP:P23931; match to protein family HMM PF01464 YP_113862.1 identified by match to protein family HMM PF01565 YP_113864.1 identified by match to protein family HMM PF00266 YP_113865.1 Involved in the metabolism of aromatic amino acids YP_113866.1 identified by similarity to OMNI:CC2910 YP_113867.1 identified by similarity to SP:P43789; match to protein family HMM PF02666; match to protein family HMM TIGR00163 YP_113868.1 identified by similarity to OMNI:VC1912 YP_113869.1 identified by similarity to SP:P08756; match to protein family HMM PF00216; match to protein family HMM TIGR00988 YP_113870.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_113871.1 identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017 YP_113872.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_113873.1 identified by match to protein family HMM PF02153 YP_113874.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_113875.1 identified by similarity to SP:P27603; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807 YP_113877.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_113878.1 identified by similarity to SP:P09097; match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063 YP_113880.1 identified by match to protein family HMM PF01755 YP_113881.1 identified by match to protein family HMM PF07690 YP_113882.1 identified by similarity to GP:17427522 YP_113883.1 identified by similarity to SP:P08632; match to protein family HMM PF00132 YP_113884.1 identified by similarity to GP:18159365; match to protein family HMM PF00535 YP_113885.1 identified by similarity to OMNI:CC0755; match to protein family HMM PF00534 YP_113886.1 identified by match to protein family HMM PF02706 YP_113887.1 identified by similarity to SP:Q45407; match to protein family HMM PF02563 YP_113888.1 identified by similarity to SP:P17903; match to protein family HMM PF01740; match to protein family HMM TIGR00377 YP_113889.1 identified by match to protein family HMM PF00534 YP_113890.1 identified by match to protein family HMM PF00534 YP_113891.1 identified by similarity to GP:15024655; match to protein family HMM PF00535 YP_113892.1 identified by match to protein family HMM PF00535 YP_113893.1 identified by similarity to SP:P71405; match to protein family HMM PF00132 YP_113894.1 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696 YP_113895.1 identified by similarity to GP:15023201 YP_113896.1 identified by similarity to OMNI:NTL01MT01553 YP_113897.1 identified by match to protein family HMM PF00072; match to protein family HMM PF07228 YP_113898.1 identified by match to protein family HMM PF01209 YP_113899.1 identified by match to protein family HMM PF00484 YP_113900.1 identified by match to protein family HMM PF00916 YP_113903.1 identified by match to protein family HMM TIGR02107 YP_113904.1 possibly involved in transport of pyrroloquinoline quinone transport YP_113905.1 Required in the synthesis of PPQ, but its exact function is unknown YP_113906.1 with PqqC converts a biosynthetic intermediate to pyrroloquinoline quinone YP_113907.1 identified by similarity to SP:P07782; match to protein family HMM PF04055; match to protein family HMM TIGR02109 YP_113908.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_113909.1 identified by similarity to SP:P10101 YP_113910.1 identified by match to protein family HMM PF00133; match to protein family HMM TIGR00396 YP_113911.1 identified by match to protein family HMM PF01656 YP_113912.1 Transfers the fatty acyl group on membrane lipoproteins YP_113913.1 identified by similarity to SP:Q9R874; match to protein family HMM PF00571; match to protein family HMM PF03471 YP_113914.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043 YP_113915.1 identified by similarity to SP:P77349; match to protein family HMM PF02562 YP_113916.1 identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01574 YP_113917.1 identified by similarity to OMNI:NTL03PA01119 YP_113918.1 identified by similarity to SP:P15027; match to protein family HMM PF02565; match to protein family HMM TIGR00613 YP_113919.1 identified by similarity to SP:P06616; match to protein family HMM PF07650; match to protein family HMM TIGR00231; match to protein family HMM TIGR00436; match to protein family HMM TIGR00650 YP_113920.1 identified by similarity to SP:P05797; match to protein family HMM PF00035; match to protein family HMM PF00636; match to protein family HMM TIGR02191 YP_113922.1 identified by similarity to SP:P00803; match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_113923.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_113924.1 identified by similarity to GP:1345104; match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037 YP_113925.1 identified by similarity to GP:1345103; match to protein family HMM PF04246 YP_113926.1 identified by similarity to SP:P46186 YP_113927.1 identified by similarity to GP:18496604 YP_113928.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_113929.1 catalyzes the formation of oxaloacetate from L-aspartate YP_113930.1 identified by similarity to SP:P29851; match to protein family HMM PF02446; match to protein family HMM TIGR00217 YP_113931.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_113932.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_113933.1 identified by similarity to SP:P08323; match to protein family HMM PF00534; match to protein family HMM TIGR02095 YP_113934.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052 YP_113935.1 identified by similarity to SP:O34525; match to protein family HMM PF01343; match to protein family HMM TIGR00706 YP_113936.1 identified by similarity to SP:P23851; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_113938.1 identified by similarity to SP:P21513; match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_113939.1 identified by similarity to SP:P43329; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM TIGR01967 YP_113940.1 identified by similarity to SP:P55475; match to protein family HMM PF01061; match to protein family HMM TIGR01291 YP_113941.1 identified by similarity to SP:P72335; match to protein family HMM PF00005 YP_113942.1 identified by similarity to GP:19887278; match to protein family HMM PF01887 YP_113943.1 identified by similarity to SP:P27857; match to protein family HMM PF00902; match to protein family HMM TIGR00945 YP_113944.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01410 YP_113945.1 identified by similarity to GP:12831974; match to protein family HMM PF02416; match to protein family HMM TIGR01411 YP_113947.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_113948.1 catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate YP_113949.1 identified by match to protein family HMM PF07586; match to protein family HMM TIGR01409 YP_113950.1 identified by match to protein family HMM PF00041; match to protein family HMM PF00553; match to protein family HMM PF07631; match to protein family HMM PF07637 YP_113951.1 identified by match to protein family HMM PF01494 YP_113952.1 identified by similarity to GP:2624947 YP_113953.1 identified by match to protein family HMM PF01553 YP_113954.1 identified by match to protein family HMM PF00535 YP_113955.1 identified by match to protein family HMM PF00383 YP_113956.1 identified by similarity to SP:P52074; match to protein family HMM PF00037; match to protein family HMM PF02754 YP_113957.1 identified by similarity to SP:P52073; match to protein family HMM PF01565 YP_113958.1 identified by similarity to SP:P52075; match to protein family HMM PF01565; match to protein family HMM PF02913 YP_113959.1 identified by match to protein family HMM PF01694 YP_113960.1 identified by similarity to OMNI:NTL03PA04934 YP_113961.1 identified by similarity to GP:7381242; match to protein family HMM PF00174; match to protein family HMM PF03404; match to protein family HMM TIGR01409 YP_113964.1 identified by match to protein family HMM PF00535 YP_113965.1 identified by match to protein family HMM PF00515 YP_113966.1 identified by similarity to SP:P05431; match to protein family HMM PF00114 YP_113967.1 identified by match to protein family HMM PF00515 YP_113968.1 identified by similarity to SP:P21296; match to protein family HMM PF00515 YP_113969.1 identified by similarity to OMNI:NTL01SMB00546 YP_113970.1 identified by match to protein family HMM PF01609 YP_113971.1 identified by similarity to GP:17129902 YP_113972.1 This gene is interrupted by an IS element.identified by similarity to GP:17430189; match to protein family HMM PF00515 YP_113973.1 identified by match to protein family HMM PF01609 YP_113974.1 This gene is interrupted by an IS element.identified by match to protein family HMM PF00515 YP_113975.1 identified by match to protein family HMM PF02254 YP_113977.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_113978.1 identified by similarity to SP:P37695; match to protein family HMM PF01648 YP_113979.1 identified by similarity to SP:P41016; match to protein family HMM PF00313 YP_113981.1 identified by similarity to SP:P29901 YP_113982.1 identified by similarity to OMNI:BB0175 YP_113983.1 identified by similarity to GP:1164996 YP_113984.1 identified by similarity to GP:2828246 YP_113985.1 identified by similarity to GP:773183 YP_113986.1 identified by similarity to OMNI:DR2086 YP_113987.1 identified by match to protein family HMM PF02390; match to protein family HMM TIGR00091 YP_113988.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_113989.1 identified by match to protein family HMM PF02325 YP_113990.1 identified by similarity to SP:P22008; match to protein family HMM PF01089; match to protein family HMM TIGR00112 YP_113991.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_113992.1 identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420 YP_113993.1 identified by similarity to OMNI:NTL03PA00397; match to protein family HMM PF00437; match to protein family HMM TIGR01420 YP_113994.1 identified by similarity to OMNI:NTL01PM1830 YP_113996.1 identified by similarity to GP:9106024; match to protein family HMM PF03937 YP_113997.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_113998.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_113999.1 identified by similarity to GP:9949137 YP_114000.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity YP_114003.1 identified by similarity to SP:P10446; match to protein family HMM PF01127 YP_114004.1 identified by similarity to SP:P10445; match to protein family HMM PF01127 YP_114005.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_114007.1 identified by similarity to OMNI:NTL01SM00306; match to protein family HMM PF03960; match to protein family HMM TIGR01617 YP_114008.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_114010.1 identified by similarity to GP:6009981; match to protein family HMM PF00581 YP_114011.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit YP_114013.1 identified by similarity to GP:4731342 YP_114014.1 identified by similarity to OMNI:NTL03PA03672; match to protein family HMM PF00005 YP_114016.1 identified by similarity to OMNI:NTL03PA03670 YP_114017.1 identified by similarity to OMNI:NTL03PA04040 YP_114018.1 identified by similarity to SP:P17724 YP_114019.1 identified by similarity to SP:P12281; match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_114021.1 identified by similarity to SP:P94547; match to protein family HMM PF00501 YP_114024.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880 YP_114025.1 identified by similarity to GP:17739984; match to protein family HMM PF00107 YP_114026.1 identified by similarity to SP:P76577; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF06832; match to protein family HMM TIGR02073 YP_114028.1 identified by similarity to SP:Q08638; match to protein family HMM PF00232 YP_114029.1 identified by similarity to SP:P30015; match to protein family HMM PF00270; match to protein family HMM PF00271 YP_114030.1 identified by match to protein family HMM PF01609 YP_114031.1 identified by match to protein family HMM PF00909 YP_114033.1 identified by match to protein family HMM PF00990; match to protein family HMM PF05231; match to protein family HMM TIGR00254 YP_114035.1 identified by similarity to GP:5257178 YP_114036.1 identified by similarity to GP:15978700 YP_114037.1 identified by similarity to SP:Q9AEM9; match to protein family HMM PF03894 YP_114039.1 identified by similarity to SP:P37877; match to protein family HMM PF00871; match to protein family HMM TIGR00016 YP_114040.1 identified by similarity to OMNI:NTL03PA00938 YP_114042.1 identified by similarity to SP:P39219; match to protein family HMM PF00849 YP_114043.1 identified by match to protein family HMM PF00565 YP_114045.1 identified by similarity to GP:19716262; match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_114046.1 identified by similarity to OMNI:NTL03PA02493; match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_114047.1 identified by similarity to GP:1707645; match to protein family HMM TIGR00915 YP_114048.1 identified by match to protein family HMM PF00440 YP_114049.1 identified by similarity to GP:1345104; match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037 YP_114050.1 identified by similarity to SP:P24191; match to protein family HMM PF01455; match to protein family HMM TIGR00074 YP_114051.1 identified by match to protein family HMM PF01155; match to protein family HMM TIGR00100 YP_114052.1 identified by similarity to SP:P24190; match to protein family HMM PF02492; match to protein family HMM TIGR00073 YP_114053.1 identified by match to protein family HMM PF01924 YP_114054.1 identified by match to protein family HMM PF00708; match to protein family HMM PF00814; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143 YP_114056.1 identified by similarity to OMNI:NTL01SS02515 YP_114057.1 identified by similarity to OMNI:PG0277 YP_114058.1 identified by similarity to OMNI:PG0277 YP_114060.1 identified by match to protein family HMM PF00313; match to protein family HMM PF01936 YP_114061.1 identified by similarity to GP:2346994; match to protein family HMM PF00239; match to protein family HMM PF02796; match to protein family HMM TIGR01199 YP_114062.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675 YP_114064.2 identified by similarity to SP:P09184 YP_114065.1 identified by match to protein family HMM PF00089 YP_114066.1 identified by match to protein family HMM PF00665; match to protein family HMM PF01527 YP_114067.1 identified by similarity to SP:Q05459; match to protein family HMM PF04014 YP_114068.1 identified by similarity to GP:20521538; match to protein family HMM PF01850 YP_114069.1 identified by similarity to OMNI:NTL01SS02064; match to protein family HMM PF05685 YP_114070.1 identified by similarity to OMNI:NTL03PA05121 YP_114071.1 identified by match to protein family HMM PF02146 YP_114074.1 identified by similarity to SP:P03004; match to protein family HMM PF00308 YP_114076.1 identified by match to protein family HMM PF00924 YP_114077.1 identified by similarity to OMNI:DR1127; match to protein family HMM PF05816 YP_114078.1 Catalyzes the rate-limiting step in dNTP synthesis YP_114080.1 identified by similarity to OMNI:NTL03PA00423; match to protein family HMM PF01292 YP_114081.1 Catalyzes the rate-limiting step in dNTP synthesis YP_114082.1 identified by similarity to OMNI:NTL01XF01460; match to protein family HMM PF04892 YP_114083.1 identified by match to protein family HMM PF00487 YP_114084.1 identified by similarity to SP:P55474; match to protein family HMM PF02543 YP_114085.1 identified by similarity to GP:17431966 YP_114086.1 identified by similarity to SP:Q51647 YP_114087.1 identified by match to protein family HMM PF00639 YP_114088.1 identified by similarity to SP:P15298; match to protein family HMM PF01722 YP_114089.1 identified by similarity to OMNI:NTL03PA03202; match to protein family HMM PF03795 YP_114090.1 identified by similarity to SP:P95745; match to protein family HMM PF04279; match to protein family HMM TIGR00997 YP_114091.1 identified by similarity to OMNI:NTL03PA03440 YP_114092.1 identified by match to protein family HMM PF00903; match to protein family HMM TIGR00068 YP_114093.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_114095.1 identified by similarity to SP:P18200; match to protein family HMM PF04608 YP_114096.1 identified by similarity to SP:P77785; match to protein family HMM PF02769; match to protein family HMM TIGR01379 YP_114097.1 identified by similarity to SP:P04381; match to protein family HMM PF01029; match to protein family HMM TIGR01951 YP_114098.1 identified by similarity to SP:P45149; match to protein family HMM PF00885; match to protein family HMM TIGR00114 YP_114099.1 identified by similarity to SP:P17620; match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00506 YP_114100.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_114101.1 identified by similarity to SP:P25539; match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326 YP_114102.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_114103.1 identified by similarity to SP:P06192; match to protein family HMM PF00464 YP_114104.1 identified by similarity to SP:P39216; match to protein family HMM PF00015; match to protein family HMM PF00672 YP_114106.1 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377 YP_114107.1 identified by match to protein family HMM PF00860 YP_114108.1 identified by match to protein family HMM PF00484 YP_114109.1 identified by match to protein family HMM PF02518 YP_114110.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_114112.1 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00742 YP_114113.1 identified by similarity to SP:Q54769; match to protein family HMM PF01227; match to protein family HMM TIGR00063 YP_114114.1 identified by similarity to SP:P23871; match to protein family HMM PF00762; match to protein family HMM TIGR00109 YP_114115.1 identified by similarity to SP:P02919; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02071 YP_114116.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_114117.1 identified by similarity to SP:P39216; match to protein family HMM PF00015; match to protein family HMM PF00672 YP_114118.1 identified by match to protein family HMM PF00664 YP_114119.1 identified by similarity to SP:P40595; match to protein family HMM PF02769; match to protein family HMM TIGR02124 YP_114120.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_114121.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00586 YP_114122.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_114123.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_114124.1 identified by similarity to SP:P07028; match to protein family HMM PF01541; match to protein family HMM PF02151; match to protein family HMM TIGR00194 YP_114125.1 identified by similarity to SP:P06978; match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_114126.1 identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF07228; match to protein family HMM TIGR00229 YP_114127.1 identified by similarity to GP:11830835; match to protein family HMM PF05088 YP_114128.1 identified by similarity to SP:P17904; match to protein family HMM PF02518 YP_114129.1 identified by similarity to SP:P10727; match to protein family HMM PF01740; match to protein family HMM TIGR00377 YP_114130.1 identified by similarity to GP:17740495; match to protein family HMM PF01935 YP_114133.1 D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm YP_114134.1 identified by similarity to SP:P16384; match to protein family HMM PF01715; match to protein family HMM TIGR00174 YP_114135.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_114137.1 identified by similarity to SP:P09625; match to protein family HMM PF00070; match to protein family HMM TIGR01292 YP_114138.1 identified by similarity to SP:P46889; match to protein family HMM PF01580 YP_114139.1 identified by similarity to OMNI:VC0849; match to protein family HMM PF03364 YP_114140.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_114145.1 identified by similarity to SP:P06139; match to protein family HMM PF00118 YP_114146.1 identified by similarity to SP:P26879; match to protein family HMM PF00166 YP_114148.1 identified by similarity to GP:2645861 YP_114150.1 identified by similarity to GP:15024215; match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579 YP_114151.1 role in sulfur assimilation YP_114152.1 identified by similarity to OMNI:NTL01ST2559; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199 YP_114153.1 identified by similarity to GP:8996050 YP_114154.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_114155.1 Catalyzes the formation of PRPP from ATP and ribose 5-phosphate YP_114156.1 catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine YP_114157.1 identified by similarity to GP:17430498 YP_114160.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_114162.1 identified by similarity to OMNI:CC1318; match to protein family HMM PF02321 YP_114163.1 identified by match to protein family HMM PF01914 YP_114164.1 identified by similarity to GP:2935166; match to protein family HMM PF00089; match to protein family HMM PF00595 YP_114166.1 identified by similarity to SP:P36659; match to protein family HMM PF00226; match to protein family HMM PF01556 YP_114167.1 identified by similarity to GP:19916878; match to protein family HMM PF02535 YP_114168.1 identified by similarity to GP:19914581; match to protein family HMM PF06803 YP_114169.1 identified by match to protein family HMM PF00011 YP_114170.1 identified by match to protein family HMM PF00011 YP_114171.1 identified by match to protein family HMM PF00011 YP_114173.1 identified by similarity to SP:P06655; match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492 YP_114174.1 identified by similarity to SP:P37469; match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665 YP_114175.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose YP_114176.1 identified by similarity to SP:P52279; match to protein family HMM PF00561; match to protein family HMM TIGR01249 YP_114178.1 identified by similarity to SP:P77770 YP_114179.1 identified by similarity to SP:P80886; match to protein family HMM PF00549; match to protein family HMM PF02222; match to protein family HMM TIGR01016 YP_114180.1 identified by similarity to SP:P80865; match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019 YP_114181.1 identified by match to protein family HMM PF00581 YP_114182.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_114183.1 identified by similarity to GP:1652538; match to protein family HMM PF00583 YP_114184.1 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_114185.1 identified by similarity to SP:P11028; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_114186.1 identified by match to protein family HMM PF01808; match to protein family HMM PF02142; match to protein family HMM TIGR00355 YP_114187.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754 YP_114188.1 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine YP_114189.1 identified by similarity to OMNI:NTL03PA00654; match to protein family HMM PF02566 YP_114191.1 identified by similarity to SP:Q8YM40; match to protein family HMM PF01835 YP_114193.1 identified by match to protein family HMM PF01360; match to protein family HMM TIGR01988 YP_114195.1 identified by similarity to SP:P25526; match to protein family HMM PF00171; match to protein family HMM TIGR01780 YP_114196.1 identified by similarity to GP:17427464; match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913 YP_114197.1 identified by similarity to GP:16504642 YP_114198.1 identified by match to protein family HMM PF00582 YP_114199.1 identified by similarity to GP:17427424; match to protein family HMM PF02080; match to protein family HMM PF02254 YP_114200.1 identified by similarity to SP:P37367; match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_114202.1 identified by similarity to OMNI:VC1941 YP_114203.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_114204.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_114205.1 identified by similarity to SP:P13510; match to protein family HMM TIGR01730 YP_114206.1 identified by match to protein family HMM TIGR00914 YP_114207.1 identified by similarity to OMNI:CC2721; match to protein family HMM PF02321 YP_114208.1 identified by similarity to GP:19916924; match to protein family HMM PF03150 YP_114210.1 identified by similarity to GP:19918600; match to protein family HMM PF01943 YP_114212.1 identified by match to protein family HMM PF00582 YP_114214.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_114215.1 identified by similarity to GP:7799507 YP_114216.1 identified by match to protein family HMM PF02628 YP_114217.1 identified by similarity to OMNI:NTL03PA04279 YP_114218.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_114219.1 identified by similarity to SP:P06709; match to protein family HMM PF03099; match to protein family HMM TIGR00121 YP_114220.1 identified by similarity to GP:9948679; match to protein family HMM PF00004 YP_114221.1 identified by match to protein family HMM PF03548; match to protein family HMM TIGR00547 YP_114222.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_114223.1 identified by similarity to SP:P25745; match to protein family HMM PF03054; match to protein family HMM TIGR00420 YP_114224.1 identified by similarity to OMNI:NTL03PA02625; match to protein family HMM PF00293 YP_114226.1 identified by similarity to OMNI:CC2467; match to protein family HMM PF02617 YP_114227.1 identified by similarity to SP:P15716; match to protein family HMM PF00004; match to protein family HMM PF02861 YP_114228.1 identified by similarity to SP:P02998; match to protein family HMM PF00575; match to protein family HMM TIGR00008 YP_114229.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_114230.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_114231.1 identified by similarity to OMNI:NTL03PA03230; match to protein family HMM PF04339 YP_114232.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_114233.1 identified by similarity to GP:17429855; match to protein family HMM PF05673 YP_114234.1 identified by similarity to GP:1913913 YP_114235.1 identified by similarity to GP:1913912; match to protein family HMM PF02461 YP_114236.1 identified by similarity to GP:1894818; match to protein family HMM PF04896 YP_114237.1 identified by similarity to SP:Q06529 YP_114238.1 identified by similarity to GP:19879585 YP_114239.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_114241.1 identified by match to protein family HMM PF01738 YP_114242.1 identified by similarity to SP:P30867; match to protein family HMM PF03255; match to protein family HMM TIGR00513 YP_114243.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433 YP_114244.1 identified by similarity to GP:5257178 YP_114245.1 identified by match to protein family HMM PF00440 YP_114246.1 identified by match to protein family HMM PF02687 YP_114247.1 identified by similarity to SP:P75831; match to protein family HMM PF00005 YP_114248.1 identified by similarity to SP:P75830 YP_114250.1 identified by similarity to SP:P76403; match to protein family HMM PF01136 YP_114251.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_114252.1 identified by similarity to GP:17429685; match to protein family HMM PF01923; match to protein family HMM TIGR00636 YP_114253.1 identified by similarity to SP:P22565; match to protein family HMM PF02401; match to protein family HMM TIGR00216 YP_114254.1 identified by match to protein family HMM PF00581 YP_114255.1 identified by similarity to SP:P45802; match to protein family HMM PF01479 YP_114256.1 identified by similarity to SP:P04994; match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237 YP_114257.1 identified by match to protein family HMM PF00691 YP_114258.1 identified by similarity to OMNI:NTL01AT0235; match to protein family HMM TIGR02096 YP_114259.1 identified by similarity to GP:15155134 YP_114260.1 identified by match to protein family HMM PF00795 YP_114262.1 identified by match to protein family HMM PF00892 YP_114263.1 identified by similarity to GP:17131822 YP_114264.1 identified by match to protein family HMM PF01464 YP_114265.1 identified by similarity to GP:12698380 YP_114266.1 identified by similarity to SP:P14299 YP_114267.1 binds and unfolds substrates as part of the ClpXP protease YP_114268.1 identified by similarity to SP:P74089; match to protein family HMM PF00132; match to protein family HMM TIGR01172 YP_114270.1 identified by similarity to GP:18891930 YP_114271.1 identified by similarity to SP:P11452; match to protein family HMM PF01188; match to protein family HMM PF02746 YP_114273.2 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate YP_114274.1 catalyzes the formation of 2-acetolactate from pyruvate in stationary phase YP_114275.1 identified by similarity to SP:P05361; match to protein family HMM PF03306; match to protein family HMM TIGR01252 YP_114276.1 identified by similarity to GP:17428896 YP_114277.1 identified by similarity to OMNI:NTL01PM1826; match to protein family HMM PF02687 YP_114278.1 identified by similarity to OMNI:NTL03PA00074; match to protein family HMM PF00005 YP_114279.1 identified by similarity to OMNI:NTL01PM1824 YP_114281.1 identified by similarity to GP:15980287 YP_114282.1 identified by similarity to GB:AAK03903.1 YP_114283.1 identified by similarity to OMNI:NTL01PM1820 YP_114284.1 identified by similarity to SP:P31120; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; match to protein family HMM TIGR01455 YP_114285.1 identified by similarity to SP:P28691; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241 YP_114286.1 identified by similarity to SP:P28692; match to protein family HMM PF01728 YP_114287.1 identified by similarity to OMNI:VC0635; match to protein family HMM PF01985; match to protein family HMM TIGR00253 YP_114288.1 identified by similarity to SP:P21346; match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462 YP_114289.1 identified by match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369 YP_114290.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_114291.1 identified by similarity to SP:P04036; match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036 YP_114292.1 identified by similarity to SP:P08622; match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556 YP_114293.1 identified by similarity to SP:P04475; match to protein family HMM PF00012 YP_114294.1 identified by similarity to SP:P09372; match to protein family HMM PF01025 YP_114295.1 identified by match to protein family HMM PF01628; match to protein family HMM TIGR00331 YP_114296.1 identified by similarity to SP:Q9HZC0; match to protein family HMM PF01513 YP_114297.1 identified by similarity to SP:P05824; match to protein family HMM TIGR00634 YP_114298.1 identified by similarity to OMNI:NTL01XF02443; match to protein family HMM PF04371 YP_114299.1 identified by match to protein family HMM PF00795 YP_114300.1 identified by similarity to SP:P42505; match to protein family HMM PF00816 YP_114301.1 identified by similarity to SP:P30958; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580 YP_114302.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_114304.1 identified by similarity to PIR:JC7085 YP_114305.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389 YP_114306.1 identified by similarity to OMNI:NTL01SS00582 YP_114308.1 identified by similarity to SP:P27854; match to protein family HMM PF03109 YP_114309.1 identified by similarity to SP:P37312; match to protein family HMM PF00375 YP_114310.1 identified by similarity to GP:3549693 YP_114311.1 identified by match to protein family HMM PF03734 YP_114312.1 identified by match to protein family HMM PF01758 YP_114313.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis YP_114315.1 identified by similarity to OMNI:NTL01SM02419; match to protein family HMM PF01152 YP_114316.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_114317.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_114319.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733 YP_114321.1 identified by similarity to OMNI:NTL01SPL0989 YP_114322.1 identified by similarity to GP:6899520 YP_114323.1 identified by similarity to GP:17984614; match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM TIGR00497 YP_114324.1 identified by similarity to GP:6723238 YP_114325.1 identified by match to protein family HMM PF01420 YP_114326.1 identified by similarity to GP:6009450; match to protein family HMM PF02231 YP_114327.1 identified by similarity to GP:19916049; match to protein family HMM PF04326 YP_114328.1 identified by similarity to GP:19919302; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348 YP_114329.1 identified by similarity to GP:19919303; match to protein family HMM PF01863 YP_114330.1 identified by match to protein family HMM PF01527 YP_114331.1 identified by match to protein family HMM PF00665 YP_114333.1 identified by similarity to SP:P55135; match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_114334.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide YP_114335.1 identified by similarity to GP:15025562; match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_114337.1 identified by similarity to SP:O67303 YP_114338.1 identified by similarity to OMNI:NTL01AA00874 YP_114340.1 identified by similarity to SP:O67300 YP_114341.1 identified by similarity to SP:Q51658; match to protein family HMM PF03150 YP_114342.1 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00378 YP_114345.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525 YP_114349.1 identified by match to protein family HMM PF00122 YP_114351.1 identified by similarity to OMNI:NTL02EC4339; match to protein family HMM PF04378 YP_114352.1 identified by similarity to SP:P00393; match to protein family HMM PF00070 YP_114354.1 identified by similarity to SP:P11585; match to protein family HMM PF01842; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_114356.1 identified by match to protein family HMM PF03009 YP_114357.1 identified by similarity to OMNI:TM0812; match to protein family HMM PF00528 YP_114358.1 identified by similarity to OMNI:NTL01SMB01298; match to protein family HMM PF07300 YP_114359.1 identified by similarity to SP:P17552 YP_114360.1 identified by similarity to OMNI:NTL02ML3828 YP_114361.1 identified by similarity to GP:17134329; match to protein family HMM PF03413 YP_114362.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524 YP_114363.1 identified by similarity to GP:19913962; match to protein family HMM PF02641 YP_114365.1 identified by match to protein family HMM PF07690 YP_114366.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_114369.1 identified by similarity to SP:P94176; match to protein family HMM TIGR01730 YP_114370.1 identified by match to protein family HMM PF02321 YP_114371.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_114372.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_114374.1 identified by similarity to OMNI:NTL01LM1722; match to protein family HMM PF01547 YP_114375.1 identified by similarity to SP:P29823; match to protein family HMM PF00528 YP_114377.1 identified by similarity to SP:P19566; match to protein family HMM PF00005 YP_114378.1 identified by similarity to SP:P32173 YP_114380.1 identified by similarity to OMNI:NTL01SMB00166 YP_114382.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_114383.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_114384.1 identified by similarity to GP:3493145 YP_114385.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_114386.1 identified by similarity to SP:P07016; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01347 YP_114387.2 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_114388.1 identified by similarity to SP:P35593; match to protein family HMM PF01641; match to protein family HMM TIGR00357 YP_114389.1 identified by match to protein family HMM PF01609 YP_114390.1 identified by similarity to OMNI:CC1750; match to protein family HMM PF00593 YP_114391.1 identified by similarity to SP:P25663; match to protein family HMM PF04386 YP_114392.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_114393.1 identified by similarity to SP:P08501; match to protein family HMM PF02167 YP_114394.1 identified by similarity to SP:P23134; match to protein family HMM PF00032; match to protein family HMM PF00033 YP_114395.1 identified by similarity to SP:P81380; match to protein family HMM PF00355; match to protein family HMM TIGR01416 YP_114396.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_114397.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_114398.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_114399.1 identified by match to protein family HMM PF01740 YP_114400.1 identified by similarity to GP:4336800; match to protein family HMM PF02470 YP_114401.1 identified by similarity to OMNI:VC2519; match to protein family HMM PF02405; match to protein family HMM TIGR00056 YP_114402.1 identified by similarity to SP:P45393; match to protein family HMM PF00005 YP_114403.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_114405.1 identified by similarity to SP:Q9KVS9; match to protein family HMM PF02537; match to protein family HMM TIGR00494 YP_114406.1 identified by similarity to SP:Q9PAG5; match to protein family HMM PF01008; match to protein family HMM TIGR00524 YP_114407.1 identified by similarity to OMNI:VC2598; match to protein family HMM PF00588; match to protein family HMM TIGR00186 YP_114408.1 identified by similarity to SP:P21499; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 YP_114410.1 identified by match to protein family HMM PF00709; match to protein family HMM TIGR00184 YP_114411.1 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_114412.1 identified by similarity to SP:P25661; match to protein family HMM PF01145; match to protein family HMM TIGR01932 YP_114413.1 identified by similarity to SP:P25662; match to protein family HMM PF01145; match to protein family HMM TIGR01933 YP_114414.1 identified by similarity to SP:P25519; match to protein family HMM TIGR00231 YP_114415.1 identified by similarity to SP:P25521; match to protein family HMM PF01423 YP_114416.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides YP_114417.1 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively YP_114418.1 Catalyzes the phosphorolytic cleavage of 6-oxopurine nucleosides YP_114419.1 identified by similarity to GP:19879576 YP_114421.1 identified by similarity to GP:19879577 YP_114422.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_114423.1 identified by similarity to SP:P54394 YP_114425.1 identified by similarity to SP:P37346; match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_114426.1 identified by similarity to OMNI:NTL03PA02960; match to protein family HMM PF07238 YP_114427.1 identified by similarity to SP:P28631 YP_114428.1 identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041 YP_114429.1 identified by similarity to OMNI:NTL03PA02963; match to protein family HMM PF02618; match to protein family HMM TIGR00247 YP_114430.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate YP_114431.1 identified by similarity to SP:P39435; match to protein family HMM PF00109; match to protein family HMM PF02801 YP_114432.1 identified by similarity to SP:P02901; match to protein family HMM PF00550; match to protein family HMM TIGR00517 YP_114433.1 identified by similarity to SP:P25716; match to protein family HMM PF00106; match to protein family HMM TIGR01830 YP_114434.1 identified by similarity to SP:P25715; match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_114435.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_114436.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_114437.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_114438.1 identified by match to protein family HMM PF02620 YP_114439.1 identified by similarity to SP:Q02169; match to protein family HMM PF02545; match to protein family HMM TIGR00172 YP_114440.1 identified by similarity to GP:17427990; match to protein family HMM PF01464 YP_114441.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis YP_114442.1 identified by match to protein family HMM PF03160 YP_114443.1 identified by similarity to SP:Q8Z9E1; match to protein family HMM TIGR01409 YP_114445.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_114446.1 heat shock protein involved in degradation of misfolded proteins YP_114447.1 heat shock protein involved in degradation of misfolded proteins YP_114448.1 identified by similarity to GP:17427467; match to protein family HMM PF06155 YP_114449.1 identified by similarity to SP:P27851; match to protein family HMM PF01209; match to protein family HMM TIGR01934 YP_114450.1 identified by similarity to OMNI:NTL03PA05065; match to protein family HMM PF06843 YP_114451.1 identified by similarity to SP:P27854; match to protein family HMM PF03109; match to protein family HMM TIGR01982 YP_114452.1 identified by similarity to GP:2564974 YP_114453.1 identified by similarity to SP:P11665; match to protein family HMM PF00162 YP_114454.1 identified by similarity to SP:P08374; match to protein family HMM PF01192; match to protein family HMM TIGR00690 YP_114455.1 identified by similarity to SP:P17580; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_114456.1 identified by similarity to SP:P40431; match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_114457.1 identified by similarity to SP:P24230; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00643 YP_114459.1 identified by similarity to GP:16501893; match to protein family HMM PF02410; match to protein family HMM TIGR00090 YP_114460.1 identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476 YP_114464.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_114465.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479 YP_114466.1 identified by similarity to SP:P23282; match to protein family HMM PF04413 YP_114467.1 identified by similarity to SP:P02418; match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158 YP_114468.1 identified by similarity to OMNI:NTL03PA04934 YP_114469.1 identified by similarity to SP:P02374; match to protein family HMM PF01084; match to protein family HMM TIGR00165 YP_114470.2 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_114471.1 identified by similarity to SP:P39812; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898 YP_114472.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_114473.1 identified by similarity to SP:P21166; match to protein family HMM PF02386 YP_114474.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_114475.1 identified by similarity to SP:P05826; match to protein family HMM PF00543 YP_114476.1 identified by match to protein family HMM PF01047 YP_114477.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_114478.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis YP_114479.1 identified by similarity to OMNI:CC1574; match to protein family HMM PF03446 YP_114480.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_114481.1 identified by similarity to SP:P00961; match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211 YP_114482.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate YP_114483.1 identified by similarity to OMNI:NTL03PA00006; match to protein family HMM PF01553 YP_114484.1 identified by match to protein family HMM PF00155 YP_114486.1 identified by similarity to OMNI:NTL03PA01734 YP_114487.1 identified by similarity to SP:Q55587; match to protein family HMM PF04169; match to protein family HMM PF04174 YP_114488.1 identified by similarity to GP:1651826; match to protein family HMM PF04168 YP_114490.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460 YP_114491.1 identified by similarity to OMNI:NTL03PA01838; match to protein family HMM PF06073 YP_114492.1 identified by similarity to OMNI:NTL03PA03115 YP_114493.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296 YP_114494.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_114495.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_114496.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_114497.1 identified by similarity to SP:P39068; match to protein family HMM PF00406; match to protein family HMM PF05191; match to protein family HMM TIGR01351 YP_114498.1 identified by similarity to SP:P37369; match to protein family HMM PF00081; match to protein family HMM PF02777 YP_114499.1 identified by match to protein family HMM PF03831; match to protein family HMM TIGR00686 YP_114500.1 identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00277 YP_114502.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_114504.1 identified by similarity to SP:P76115; match to protein family HMM PF00593 YP_114505.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_114506.1 identified by similarity to SP:P76506; match to protein family HMM PF04333 YP_114507.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A) YP_114508.1 identified by similarity to GP:19880969; match to protein family HMM PF00462; match to protein family HMM TIGR00365 YP_114509.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_114510.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_114512.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_114513.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis YP_114514.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis YP_114515.1 identified by similarity to SP:P36650; match to protein family HMM PF00149 YP_114516.1 hydrolyzes diadenosine polyphosphate YP_114517.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_114518.1 identified by similarity to GP:17427822; match to protein family HMM PF01206 YP_114519.1 identified by similarity to SP:P11098; match to protein family HMM PF00590; match to protein family HMM TIGR01469; match to protein family HMM TIGR01470; precorrin-2 oxidase; siroheme synthase YP_114520.1 identified by similarity to GP:17429853; match to protein family HMM PF03884 YP_114521.1 identified by similarity to SP:P36680; match to protein family HMM PF07072 YP_114523.1 identified by similarity to SP:P36679; match to protein family HMM PF01121; match to protein family HMM TIGR00152 YP_114524.1 identified by similarity to SP:P22610; match to protein family HMM PF01478; match to protein family HMM PF06750 YP_114525.1 identified by similarity to GP:151066; match to protein family HMM PF00482 YP_114526.1 identified by similarity to SP:P22608; match to protein family HMM PF00437; match to protein family HMM PF05157 YP_114527.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_114528.1 identified by similarity to SP:P28905; match to protein family HMM PF04364 YP_114529.1 identified by similarity to SP:P11648; match to protein family HMM PF00883; match to protein family HMM PF02789 YP_114530.1 identified by similarity to OMNI:NTL03PA03828; match to protein family HMM PF03739 YP_114531.1 identified by similarity to SP:P39341; match to protein family HMM PF03739 YP_114532.1 identified by similarity to OMNI:NTL03PA03826; match to protein family HMM PF06271 YP_114534.1 identified by similarity to GP:9715733; match to protein family HMM PF00132; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733 YP_114536.1 identified by match to protein family HMM PF02321 YP_114538.1 identified by similarity to GP:4378852 YP_114540.1 membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan YP_114541.1 identified by match to protein family HMM PF01464 YP_114542.1 identified by match to protein family HMM PF01816 YP_114543.1 identified by match to protein family HMM PF00023; match to protein family HMM PF00581 YP_114544.1 identified by similarity to OMNI:NTL01SS00882; match to protein family HMM PF03065 YP_114545.1 identified by similarity to OMNI:NTL01SS00882 YP_114546.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_114547.1 identified by match to protein family HMM PF01061 YP_114548.1 identified by similarity to SP:P36879; match to protein family HMM PF00005 YP_114549.1 identified by match to protein family HMM PF02541 YP_114550.1 identified by similarity to SP:P71243; match to protein family HMM PF00534 YP_114551.1 identified by match to protein family HMM PF01041 YP_114552.1 identified by match to protein family HMM PF00534 YP_114553.1 identified by similarity to SP:P54420; match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_114555.1 identified by similarity to GP:4580028 YP_114556.1 identified by similarity to GP:3282847 YP_114558.1 identified by similarity to OMNI:VC0913; match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_114559.1 identified by similarity to SP:P37687; match to protein family HMM PF00462; match to protein family HMM TIGR02181 YP_114560.1 identified by similarity to SP:P33636; match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_114562.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836 YP_114563.1 identified by similarity to SP:P38504; match to protein family HMM PF00543 YP_114564.1 identified by similarity to SP:Q46868; match to protein family HMM PF04380 YP_114565.1 identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368 YP_114566.1 identified by similarity to SP:P09980; match to protein family HMM PF00580; match to protein family HMM TIGR01074 YP_114569.1 identified by similarity to OMNI:NTL01PM1828 YP_114570.1 identified by similarity to OMNI:NTL01PM1827; match to protein family HMM PF03781 YP_114571.1 identified by match to protein family HMM PF00854 YP_114572.1 identified by similarity to SP:P18956; match to protein family HMM PF01019; match to protein family HMM TIGR00066 YP_114575.1 identified by similarity to OMNI:NTL03PA01960; match to protein family HMM PF00313; match to protein family HMM PF06961 YP_114576.1 identified by similarity to OMNI:VCA0638 YP_114577.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_114578.1 identified by similarity to SP:P11092; match to protein family HMM PF02321 YP_114579.1 identified by similarity to GP:2385380 YP_114580.1 identified by similarity to SP:P30746; match to protein family HMM PF00994; match to protein family HMM TIGR00177 YP_114581.1 identified by similarity to GP:17428575; match to protein family HMM PF03631; match to protein family HMM TIGR00765 YP_114582.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_114583.1 identified by similarity to GP:4325061 YP_114585.1 identified by similarity to GP:17132783; match to protein family HMM PF05685 YP_114587.1 identified by similarity to SP:O34623; match to protein family HMM PF01336; match to protein family HMM PF02231; match to protein family HMM TIGR00594 YP_114588.1 identified by similarity to OMNI:NTL03PA00671 YP_114589.1 identified by similarity to GP:9946550 YP_114590.1 Represses a number of genes involved in the response to DNA damage YP_114591.1 identified by match to protein family HMM PF02012 YP_114592.1 identified by similarity to SP:P12376; match to protein family HMM PF04234 YP_114594.1 identified by similarity to OMNI:NTL03PA02857; match to protein family HMM PF00005 YP_114595.1 identified by similarity to OMNI:DRB0050 YP_114596.1 identified by similarity to GP:4249623; match to protein family HMM PF01297 YP_114597.1 identified by similarity to OMNI:NTL01BH0645 YP_114600.1 identified by match to protein family HMM PF01609 YP_114602.1 identified by match to protein family HMM PF00593 YP_114603.1 identified by match to protein family HMM PF00034 YP_114604.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_114605.1 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149 YP_114606.1 identified by similarity to SP:P37194; match to protein family HMM PF03843 YP_114607.1 identified by similarity to OMNI:NTL03PA05329 YP_114608.1 identified by match to protein family HMM PF00106 YP_114609.1 identified by match to protein family HMM PF00245 YP_114613.1 identified by match to protein family HMM PF02366 YP_114614.1 identified by match to protein family HMM PF00535 YP_114615.1 identified by similarity to OMNI:NTL03PA04821; match to protein family HMM PF04138 YP_114617.1 identified by similarity to GP:19916330 YP_114619.1 identified by match to protein family HMM PF00023 YP_114620.1 identified by similarity to GP:7159038; match to protein family HMM PF01292 YP_114621.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_114622.1 identified by similarity to SP:P23034; match to protein family HMM PF00155 YP_114623.1 identified by similarity to OMNI:NMB0638; match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_114624.1 identified by similarity to SP:P23846; match to protein family HMM PF01583; match to protein family HMM TIGR00455 YP_114625.1 identified by similarity to OMNI:NTL03PA03179; match to protein family HMM PF00849; match to protein family HMM TIGR00093 YP_114626.1 identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281 YP_114627.1 identified by similarity to SP:P35154; match to protein family HMM PF02616 YP_114628.1 identified by match to protein family HMM PF02163 YP_114629.1 identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057 YP_114630.1 identified by similarity to GP:15980083; match to protein family HMM PF00814 YP_114631.1 identified by match to protein family HMM PF00899; match to protein family HMM PF05237 YP_114632.1 identified by similarity to OMNI:NTL03PA00070; match to protein family HMM PF04055 YP_114633.1 identified by similarity to SP:P21866; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_114634.1 identified by similarity to SP:P21865; match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702 YP_114635.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex YP_114636.1 identified by similarity to SP:P03960; match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01497 YP_114637.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_114638.1 identified by match to protein family HMM TIGR02115 YP_114639.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate YP_114640.1 identified by similarity to SP:P14489; match to protein family HMM PF00905 YP_114641.1 identified by similarity to SP:P14924; match to protein family HMM PF01569 YP_114642.1 catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge YP_114643.1 identified by match to protein family HMM PF00801 YP_114645.1 identified by similarity to GP:9946574 YP_114646.1 identified by similarity to OMNI:NTL01RSA0540; match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01901 YP_114649.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_114650.1 identified by match to protein family HMM PF00873 YP_114651.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_114653.1 identified by similarity to OMNI:NTL03PA00697 YP_114654.1 identified by similarity to OMNI:NTL03PA00696 YP_114655.1 identified by similarity to SP:P18784; match to protein family HMM PF02472 YP_114656.1 identified by match to protein family HMM PF01618 YP_114659.1 identified by match to protein family HMM PF00534 YP_114660.1 identified by match to protein family HMM PF00149 YP_114661.1 identified by similarity to OMNI:NTL03PA04657; match to protein family HMM TIGR01777 YP_114664.1 identified by similarity to SP:P02422; match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_114665.1 involved in the peptidyltransferase reaction during translation YP_114666.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_114667.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_114668.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_114669.1 identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695 YP_114670.1 identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083 YP_114671.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme YP_114672.1 identified by match to protein family HMM PF01252; match to protein family HMM TIGR00077 YP_114674.1 identified by match to protein family HMM PF00440 YP_114675.1 identified by match to protein family HMM PF00529 YP_114676.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_114677.1 identified by similarity to GP:4325061 YP_114678.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_114679.1 identified by similarity to SP:P45349; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_114680.1 identified by similarity to GP:19881003; match to protein family HMM PF02321 YP_114681.1 identified by similarity to SP:P77239; match to protein family HMM TIGR01730 YP_114682.1 identified by match to protein family HMM TIGR00914 YP_114683.1 identified by similarity to SP:P45945; match to protein family HMM PF00903 YP_114685.1 identified by similarity to GP:10241924; match to protein family HMM PF00881 YP_114686.1 identified by similarity to GP:17429227; match to protein family HMM PF02678 YP_114687.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_114688.1 identified by similarity to SP:P00893; match to protein family HMM PF00205; match to protein family HMM PF02776; match to protein family HMM TIGR00118 YP_114689.1 identified by similarity to SP:P00894; match to protein family HMM PF01842; match to protein family HMM TIGR00119 YP_114690.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_114691.1 identified by similarity to SP:Q48269; match to protein family HMM PF01066; match to protein family HMM TIGR00473 YP_114692.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_114693.1 identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758 YP_114694.1 identified by similarity to SP:P09453; match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_114695.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_114696.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_114698.1 identified by similarity to GP:17131803; match to protein family HMM PF00310 YP_114700.1 identified by similarity to GP:12620739 YP_114701.1 identified by similarity to SP:P36653; match to protein family HMM PF05728 YP_114704.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group YP_114705.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase YP_114706.1 identified by similarity to GP:17431084; match to protein family HMM PF00881 YP_114707.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid YP_114708.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide YP_114709.1 identified by similarity to GP:17427338 YP_114710.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466 YP_114711.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01467 YP_114712.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01468 YP_114713.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A YP_114714.1 identified by similarity to SP:P21638; match to protein family HMM PF02570 YP_114715.1 identified by match to protein family HMM PF01903 YP_114716.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465 YP_114719.1 identified by similarity to GP:609231; match to protein family HMM PF00288 YP_114720.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_114721.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521 YP_114723.1 identified by similarity to SP:P04194; match to protein family HMM PF02329 YP_114724.1 identified by similarity to GP:18161035 YP_114726.1 identified by similarity to GP:11862900 YP_114727.1 identified by match to protein family HMM TIGR00740 YP_114728.1 identified by similarity to SP:P13685; match to protein family HMM PF01743; match to protein family HMM TIGR01942 YP_114729.1 identified by similarity to SP:P26281; match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_114730.1 identified by similarity to SP:P31057; match to protein family HMM PF02548; match to protein family HMM TIGR00222 YP_114731.1 identified by similarity to SP:P31663; match to protein family HMM PF02569; match to protein family HMM TIGR00018 YP_114732.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_114733.1 identified by similarity to SP:P28822; match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_114734.1 identified by similarity to GP:17429239; match to protein family HMM PF02649; match to protein family HMM TIGR00294 YP_114735.1 identified by similarity to GP:13559971 YP_114736.1 identified by similarity to OMNI:NTL03PA05535 YP_114737.1 identified by similarity to OMNI:CC0214; match to protein family HMM PF00593 YP_114740.1 identified by match to protein family HMM TIGR00914 YP_114741.1 identified by similarity to GP:8388788; match to protein family HMM TIGR01730 YP_114743.1 identified by similarity to OMNI:SP0830 YP_114745.1 identified by match to protein family HMM PF02321 YP_114746.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_114747.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_114748.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00857 YP_114749.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_114750.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_114751.1 identified by similarity to GP:10442817; match to protein family HMM PF03652; match to protein family HMM TIGR00250 YP_114752.1 identified by similarity to GP:17427686; match to protein family HMM PF02622 YP_114753.1 identified by similarity to GP:17429800; match to protein family HMM TIGR01352 YP_114754.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_114755.1 identified by similarity to SP:P02428; match to protein family HMM PF00830; match to protein family HMM TIGR00009 YP_114756.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_114757.1 identified by similarity to GP:1688245; match to protein family HMM PF01656 YP_114759.1 identified by similarity to SP:P09376; match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037 YP_114760.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_114761.1 identified by similarity to SP:P30870; match to protein family HMM PF03710 YP_114762.1 identified by similarity to SP:P02416; match to protein family HMM PF01196; match to protein family HMM TIGR00059 YP_114763.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_114764.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_114765.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_114766.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_114767.1 identified by similarity to SP:P21194; match to protein family HMM PF00444; match to protein family HMM TIGR01022 YP_114768.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_114769.1 identified by similarity to SP:P02413; match to protein family HMM PF01305; match to protein family HMM TIGR01071 YP_114770.1 identified by similarity to SP:P02430; match to protein family HMM PF00327; match to protein family HMM TIGR01308 YP_114771.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_114772.1 binds 5S rRNA along with protein L5 and L25 YP_114773.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_114774.1 identified by similarity to SP:P02361; match to protein family HMM PF00410 YP_114775.1 identified by similarity to SP:P02370; match to protein family HMM PF00253 YP_114776.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_114777.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_114778.1 identified by similarity to SP:P02411; match to protein family HMM PF00238; match to protein family HMM TIGR01067 YP_114779.1 identified by similarity to SP:P02373; match to protein family HMM PF00366 YP_114780.1 identified by similarity to SP:P02429; match to protein family HMM PF00831; match to protein family HMM TIGR00012 YP_114781.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_114782.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_114783.1 identified by similarity to SP:P02423; match to protein family HMM PF00237; match to protein family HMM TIGR01044 YP_114784.1 identified by similarity to SP:P02375; match to protein family HMM PF00203; match to protein family HMM TIGR01050 YP_114785.2 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_114786.1 identified by similarity to SP:P02424; match to protein family HMM PF00276 YP_114787.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_114788.1 identified by similarity to SP:P02386; match to protein family HMM PF00297 YP_114789.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_114790.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_114791.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_114792.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_114793.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_114794.1 identified by similarity to SP:P09155; match to protein family HMM PF00570; match to protein family HMM PF01612; match to protein family HMM TIGR01388 YP_114795.1 identified by similarity to GP:9950959 YP_114796.1 identified by similarity to GP:19915811; match to protein family HMM TIGR02276 YP_114797.1 identified by similarity to GP:773184 YP_114798.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates YP_114799.1 identified by similarity to OMNI:VC2288 YP_114800.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_114801.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. YP_114802.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm YP_114803.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_114804.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_114805.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_114806.1 identified by match to protein family HMM PF01790 YP_114807.1 identified by match to protein family HMM PF04055 YP_114809.1 identified by similarity to GP:5070630 YP_114810.1 identified by similarity to SP:P43302; match to protein family HMM PF00034 YP_114811.1 identified by similarity to GP:4001615; match to protein family HMM PF00115 YP_114812.1 identified by similarity to SP:P98052 YP_114814.1 identified by similarity to GP:2182019 YP_114815.1 identified by similarity to SP:P98008 YP_114816.1 identified by similarity to OMNI:NTL01ATA0505 YP_114817.1 identified by match to protein family HMM PF00571; match to protein family HMM PF04982 YP_114818.1 identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476 YP_114819.1 identified by similarity to SP:P95339; match to protein family HMM PF00034 YP_114821.1 identified by similarity to OMNI:NTL03PA00380; match to protein family HMM PF04241 YP_114822.1 identified by similarity to GP:4100188 YP_114825.1 identified by similarity to SP:P41780; match to protein family HMM PF02424 YP_114826.1 identified by match to protein family HMM PF00310 YP_114828.1 identified by match to protein family HMM PF00534 YP_114829.1 identified by match to protein family HMM PF00534 YP_114830.1 identified by similarity to GP:8246788; match to protein family HMM PF01169 YP_114831.1 identified by similarity to OMNI:NTL03PA04468; match to protein family HMM PF02535 YP_114832.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_114833.1 identified by similarity to SP:P24206; match to protein family HMM PF01135; match to protein family HMM TIGR00080 YP_114834.1 identified by similarity to GP:14026256; match to protein family HMM PF00583; match to protein family HMM PF02629 YP_114835.1 identified by similarity to GP:29540766 YP_114836.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_114837.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_114838.1 identified by similarity to SP:P06137; match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_114839.1 identified by similarity to SP:P06136; match to protein family HMM PF03799 YP_114840.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_114841.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_114842.1 identified by similarity to SP:P17952; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01082 YP_114843.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_114844.1 identified by similarity to SP:P16457; match to protein family HMM PF01098 YP_114845.1 identified by similarity to SP:P14900; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01087 YP_114846.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_114847.1 identified by similarity to GP:12007716; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01085 YP_114848.1 identified by similarity to SP:P04286; match to protein family HMM PF00905; match to protein family HMM PF03717 YP_114849.1 identified by similarity to SP:P22187; match to protein family HMM PF04999; match to protein family HMM TIGR02209 YP_114850.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_114851.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_114852.1 identified by similarity to SP:P15042; match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 YP_114853.1 identified by similarity to SP:P77173; match to protein family HMM PF04354 YP_114854.1 identified by similarity to SP:P51834; match to protein family HMM PF02463; match to protein family HMM PF02483; match to protein family HMM PF06470; match to protein family HMM TIGR02168 YP_114855.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis YP_114856.1 identified by similarity to OMNI:NTL01BH0617; match to protein family HMM PF03473 YP_114857.1 identified by similarity to SP:P10442; match to protein family HMM PF01351 YP_114858.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_114859.1 identified by similarity to SP:P21774; match to protein family HMM PF03061; match to protein family HMM TIGR01750 YP_114860.1 identified by similarity to SP:P31519; match to protein family HMM PF03938 YP_114861.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244 YP_114862.1 identified by similarity to SP:P07656; match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_114863.1 identified by similarity to SP:P39858; match to protein family HMM PF01370 YP_114864.1 identified by similarity to SP:P32125; match to protein family HMM PF03205; match to protein family HMM TIGR00176 YP_114865.1 identified by similarity to SP:Q59083; match to protein family HMM PF01370; match to protein family HMM TIGR01179 YP_114868.1 identified by similarity to OMNI:NT01MC3442; match to protein family HMM PF01928 YP_114870.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_114871.1 identified by similarity to OMNI:NTL01SM01709 YP_114872.1 identified by similarity to SP:P09157; match to protein family HMM PF00081; match to protein family HMM PF02777 YP_114873.1 identified by similarity to GP:20800465; match to protein family HMM PF00106 YP_114875.1 identified by similarity to GP:16944582 YP_114878.1 identified by similarity to OMNI:NTL03ST2793; match to protein family HMM PF07690 YP_114879.1 identified by similarity to OMNI:NTL03PA05495 YP_114880.1 identified by similarity to SP:P06980; match to protein family HMM PF04262; match to protein family HMM TIGR01434 YP_114881.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite YP_114882.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation YP_114883.1 identified by similarity to GP:142304; match to protein family HMM PF00037 YP_114884.1 identified by similarity to OMNI:TM1415; match to protein family HMM PF00459 YP_114885.1 identified by match to protein family HMM PF00916 YP_114886.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_114887.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_114888.1 Matches only weakly to riboflavin-specific deaminase in the N terminal end of the proteinidentified by match to protein family HMM PF00925 YP_114889.1 identified by similarity to SP:P37512; match to protein family HMM PF03190 YP_114891.1 identified by similarity to SP:P13156; match to protein family HMM PF03977; match to protein family HMM TIGR01109 YP_114892.1 catalyzes the formation of pyruvate from oxaloacetate YP_114893.1 identified by similarity to SP:P13155; match to protein family HMM PF04277; match to protein family HMM TIGR01195 YP_114894.1 identified by similarity to GP:18159443 YP_114895.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_114896.1 identified by similarity to OMNI:NTL01NM00778; match to protein family HMM PF04305 YP_114897.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_114898.1 identified by match to protein family HMM PF00850 YP_114899.1 identified by similarity to SP:O54068; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721 YP_114900.1 catalyzes the conversion of O-succinylhomoserine into homocysteine YP_114901.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_114902.1 identified by similarity to SP:P08550; match to protein family HMM PF02674 YP_114903.1 identified by similarity to OMNI:NTL03PA03110; match to protein family HMM PF05036 YP_114904.1 identified by similarity to SP:P08192; match to protein family HMM PF02875; match to protein family HMM TIGR01499 YP_114905.1 identified by similarity to SP:P08193; match to protein family HMM TIGR00515 YP_114906.1 identified by similarity to SP:Q9PDK3; match to protein family HMM PF00290; match to protein family HMM TIGR00262 YP_114907.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_114908.1 identified by similarity to SP:Q59649; match to protein family HMM PF00697 YP_114909.1 identified by similarity to SP:P07649; match to protein family HMM PF01416; match to protein family HMM TIGR00071 YP_114912.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme YP_114917.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_114918.1 identified by similarity to SP:P73925; match to protein family HMM PF01152 YP_114919.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_114920.2 Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation YP_114922.1 identified by match to protein family HMM PF01609 YP_114923.1 identified by similarity to GP:7650481; match to protein family HMM PF04185 YP_114924.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_114925.2 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_114926.1 identified by similarity to SP:P08324; match to protein family HMM PF00113; match to protein family HMM PF03952; match to protein family HMM TIGR01060 YP_114927.1 identified by match to protein family HMM PF04977 YP_114928.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_114929.1 identified by similarity to SP:P36663; match to protein family HMM PF02542; match to protein family HMM TIGR00151 YP_114930.1 catalyzes the modification of U13 in tRNA(Glu) YP_114931.1 identified by similarity to SP:P37311; match to protein family HMM PF03960; match to protein family HMM TIGR00014 YP_114932.1 identified by similarity to SP:P30849; match to protein family HMM PF00258 YP_114933.1 identified by similarity to OMNI:NTL03PA00948 YP_114934.1 identified by match to protein family HMM PF02558; match to protein family HMM TIGR00745 YP_114935.1 identified by similarity to OMNI:NTL01SS02345 YP_114936.1 identified by similarity to OMNI:NT01MC3769 YP_114937.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_114938.1 identified by similarity to SP:Q46903; match to protein family HMM PF01242 YP_114939.1 identified by similarity to OMNI:NTL01XF01262 YP_114940.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_114941.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_114942.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA YP_114943.1 identified by match to protein family HMM PF00011 YP_114944.1 identified by similarity to OMNI:NTL03PA05135; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 YP_114945.1 identified by match to protein family HMM PF01551 YP_114946.1 identified by match to protein family HMM PF01022 YP_114947.1 identified by match to protein family HMM PF00581 YP_114948.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA YP_114949.1 identified by similarity to SP:P37606; match to protein family HMM PF01210; match to protein family HMM PF07479 YP_114950.1 identified by similarity to SP:P33899; match to protein family HMM PF00588; match to protein family HMM TIGR00185 YP_114951.1 identified by similarity to SP:P11217; match to protein family HMM TIGR02093 YP_114952.1 identified by similarity to SP:P06713; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; match to protein family HMM TIGR01818 YP_114953.1 identified by similarity to SP:P06712; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_114954.1 includes an intein; identified by similarity to OMNI:TM0118; match to protein family HMM PF02867; match to protein family HMM TIGR01443; match to protein family HMM TIGR01445; match to protein family HMM TIGR02504 YP_114957.1 identified by similarity to OMNI:NTL01AP01225 YP_114958.1 identified by similarity to GP:4753136; match to protein family HMM PF00534 YP_114960.1 identified by match to protein family HMM PF00005 YP_114963.1 identified by match to protein family HMM PF00639 YP_114964.1 identified by match to protein family HMM PF01839 YP_114967.1 identified by match to protein family HMM PF01609 YP_114968.1 identified by match to protein family HMM PF00535 YP_114969.1 identified by match to protein family HMM PF00535 YP_114970.1 identified by match to protein family HMM PF00534 YP_114971.1 identified by similarity to GP:8250587 YP_114972.1 catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate YP_114974.1 identified by similarity to GP:7649572; match to protein family HMM PF01565 YP_114975.1 identified by match to protein family HMM PF00106 YP_114977.1 identified by similarity to OMNI:NTL02ML5433 YP_114978.1 identified by similarity to GP:17130075; match to protein family HMM PF04055 YP_114979.1 identified by similarity to OMNI:NTL01MT00637; match to protein family HMM PF01986 YP_114980.1 identified by similarity to SP:P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF01612; match to protein family HMM PF02739; match to protein family HMM TIGR00593 YP_114981.1 identified by similarity to GP:12698380 YP_114983.1 identified by similarity to SP:P07658; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591 YP_114984.1 identified by similarity to GP:4007678; match to protein family HMM PF01257; match to protein family HMM PF01512 YP_114985.1 identified by match to protein family HMM PF00005 YP_114986.1 identified by similarity to SP:P09834; match to protein family HMM PF00528; match to protein family HMM TIGR02141 YP_114987.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256 YP_114988.1 identified by similarity to SP:P32661; match to protein family HMM PF00834; match to protein family HMM TIGR01163 YP_114989.1 identified by similarity to SP:P32662; match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_114990.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_114991.1 identified by similarity to SP:P20576; match to protein family HMM PF00117; match to protein family HMM TIGR00566 YP_114992.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_114993.1 identified by similarity to SP:P20577; match to protein family HMM PF00218 YP_114994.1 identified by similarity to SP:P21645; match to protein family HMM PF00132; match to protein family HMM TIGR01853 YP_114995.1 identified by similarity to GP:13506915 YP_114998.1 identified by similarity to OMNI:NT01MC0675 YP_114999.1 identified by similarity to GP:498170; match to protein family HMM PF00278 YP_115000.1 identified by similarity to SP:P17888; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM TIGR00595 YP_115001.1 identified by similarity to OMNI:NTL01XF01913; match to protein family HMM PF01844 YP_115002.1 identified by similarity to SP:P21599; match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064 YP_115003.1 identified by similarity to SP:P50321; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_115005.1 identified by match to protein family HMM PF05362 YP_115006.1 identified by similarity to GP:4008541; match to protein family HMM PF03372 YP_115007.1 identified by similarity to SP:P32557; match to protein family HMM PF01323 YP_115008.1 identified by similarity to SP:P43302; match to protein family HMM PF00034 YP_115009.1 identified by similarity to SP:Q9HT81; match to protein family HMM TIGR00650 YP_115010.1 identified by similarity to GP:6409238; match to protein family HMM PF00128 YP_115011.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_115012.1 identified by match to protein family HMM PF02554 YP_115013.1 identified by match to protein family HMM PF00924 YP_115014.1 identified by match to protein family HMM PF00459 YP_115015.1 identified by similarity to SP:P77438; match to protein family HMM PF00588; match to protein family HMM TIGR00050 YP_115016.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172 YP_115017.1 identified by match to protein family HMM PF00581 YP_115018.1 identified by similarity to GP:17427791; match to protein family HMM PF00085 YP_115019.1 identified by similarity to SP:P77790; match to protein family HMM PF01427 YP_115020.1 identified by match to protein family HMM PF01694 YP_115021.1 identified by similarity to OMNI:NTL03PA02805 YP_115022.1 identified by similarity to SP:P04369; match to protein family HMM PF00034 YP_115023.1 identified by match to protein family HMM PF00768 YP_115024.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_115025.1 identified by match to protein family HMM PF00209 YP_115026.1 identified by similarity to SP:P23089; match to protein family HMM PF04355 YP_115027.1 identified by similarity to SP:P06975; match to protein family HMM PF01475 YP_115028.1 identified by similarity to SP:P75958; match to protein family HMM PF02687; match to protein family HMM TIGR02212 YP_115029.1 identified by similarity to SP:P75957; match to protein family HMM PF00005; match to protein family HMM TIGR02211 YP_115030.1 identified by similarity to OMNI:VC1880 YP_115031.1 identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361 YP_115032.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR02034; in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from EScherichia coli involved in cysteine biosynthesis YP_115033.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_115036.1 identified by similarity to OMNI:NTL01RS3173 YP_115038.1 identified by similarity to GP:17430196; match to protein family HMM PF00239; match to protein family HMM PF07508 YP_115039.1 identified by similarity to OMNI:NTL01RS3170 YP_115041.1 identified by similarity to GP:17430265 YP_115042.1 identified by similarity to GP:3378296 YP_115043.1 identified by similarity to GP:17430264; match to protein family HMM PF00376; match to protein family HMM TIGR01764 YP_115044.1 identified by similarity to GP:17430263 YP_115045.1 identified by similarity to GP:17430262 YP_115046.1 identified by similarity to OMNI:NTL01XF01664; match to protein family HMM PF02498 YP_115047.1 identified by similarity to GP:17427847 YP_115048.1 identified by similarity to GP:17430259 YP_115049.1 identified by similarity to GP:17430258 YP_115050.1 identified by similarity to GP:17430256 YP_115051.1 identified by similarity to GP:17430255 YP_115052.1 identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613 YP_115053.1 identified by similarity to OMNI:NTL01RS3228 YP_115054.1 identified by similarity to GP:17427852 YP_115055.1 identified by similarity to GP:17430251 YP_115056.1 identified by similarity to OMNI:NTL02ML1026 YP_115057.1 identified by similarity to OMNI:NTL01SMA00299; match to protein family HMM PF05016 YP_115058.1 identified by match to protein family HMM PF01555 YP_115059.1 identified by similarity to GP:17427857; match to protein family HMM PF01555; match to protein family HMM PF02195 YP_115060.1 identified by similarity to GP:17430238 YP_115061.1 identified by similarity to OMNI:NTL01RSA0579 YP_115062.1 identified by match to protein family HMM PF05876 YP_115063.1 identified by similarity to GP:17427868 YP_115064.1 identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539 YP_115065.1 identified by match to protein family HMM PF01343 YP_115066.1 identified by similarity to OMNI:NTL01RS0859 YP_115067.1 identified by similarity to GP:6723249 YP_115068.1 identified by similarity to GP:17427873 YP_115069.1 identified by similarity to GP:17427874 YP_115071.1 identified by similarity to GP:17427875 YP_115072.1 identified by similarity to GP:17427876 YP_115073.1 identified by similarity to GP:17427878 YP_115074.1 identified by similarity to GP:6901589 YP_115075.1 identified by similarity to OMNI:NT01MC3182 YP_115076.1 identified by similarity to GP:17427887 YP_115077.1 identified by similarity to GP:17427888 YP_115078.1 identified by similarity to GP:17427889 YP_115079.1 identified by similarity to GP:17427890 YP_115081.1 identified by similarity to GP:17427892 YP_115082.1 identified by similarity to GP:17427893 YP_115083.1 identified by similarity to GP:17430219 YP_115084.1 identified by similarity to SP:P10439; match to protein family HMM PF00959 YP_115086.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851 YP_115088.1 identified by similarity to GP:19887865 YP_115091.1 identified by match to protein family HMM PF01609 YP_115093.1 identified by match to protein family HMM PF00665; match to protein family HMM PF01527; match to protein family HMM TIGR01199 YP_115094.1 identified by similarity to SP:P02339; match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_115095.1 identified by similarity to SP:P77726; match to protein family HMM PF00083; match to protein family HMM PF07690 YP_115096.1 identified by similarity to SP:P76146; match to protein family HMM PF05249 YP_115098.1 identified by similarity to SP:P07671; match to protein family HMM PF00005; match to protein family HMM TIGR00630 YP_115101.1 identified by similarity to GP:19916392; match to protein family HMM TIGR02230 YP_115102.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit A is part of the membrane proton channel F0 YP_115103.1 identified by similarity to SP:Q05366; match to protein family HMM PF00137; match to protein family HMM TIGR01260 YP_115104.1 identified by match to protein family HMM PF00430 YP_115105.1 identified by match to protein family HMM PF00089 YP_115106.1 identified by match to protein family HMM PF00082 YP_115107.1 identified by match to protein family HMM PF00165 YP_115108.1 produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit YP_115109.1 identified by match to protein family HMM PF00231 YP_115110.1 identified by similarity to OMNI:NTL01SMA00234; match to protein family HMM PF01594 YP_115111.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_115112.1 identified by similarity to SP:P77901; match to protein family HMM PF00067 YP_115113.1 identified by similarity to OMNI:NTL01SMB00554 YP_115114.1 identified by similarity to SP:P24173; match to protein family HMM PF01075 YP_115115.1 identified by similarity to GP:17427985 YP_115116.1 identified by match to protein family HMM PF01266 YP_115119.1 identified by similarity to GP:1785478 YP_115120.1 identified by similarity to SP:P37973; match to protein family HMM TIGR01730 YP_115121.1 identified by similarity to SP:P94177; match to protein family HMM TIGR00914 YP_115124.1 identified by similarity to SP:P22317; match to protein family HMM PF01257; match to protein family HMM PF01512 YP_115125.1 identified by similarity to SP:P22318; match to protein family HMM PF00111 YP_115126.1 identified by similarity to SP:P22319; match to protein family HMM PF01058 YP_115127.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_115128.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_115129.1 identified by similarity to SP:P11045; match to protein family HMM PF00186 YP_115130.1 identified by similarity to SP:P30747; match to protein family HMM PF01967; match to protein family HMM TIGR00581 YP_115131.1 identified by match to protein family HMM PF01613 YP_115132.1 identified by similarity to GP:19915032 YP_115133.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_115136.1 member of metallo-beta-lactamase; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_115138.1 identified by similarity to GP:6899861; match to protein family HMM PF00215; match to protein family HMM PF01380 YP_115140.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_115141.1 identified by similarity to OMNI:NTL03PA03070 YP_115142.1 identified by similarity to OMNI:NTL03PA05245; match to protein family HMM PF00597 YP_115143.1 type III RuBisCO; involved in carbon fixation YP_115144.1 identified by similarity to GP:17646562; match to protein family HMM PF00101 YP_115145.1 identified by similarity to GP:4105515 YP_115146.1 identified by match to protein family HMM PF00553 YP_115148.1 identified by match to protein family HMM PF00672; match to protein family HMM PF07228 YP_115149.1 identified by match to protein family HMM PF00593 YP_115152.1 identified by similarity to GP:4433775; match to protein family HMM PF00092 YP_115153.1 identified by similarity to SP:Q50695 YP_115154.1 identified by match to protein family HMM PF01758 YP_115157.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_115158.1 identified by similarity to SP:P21369; match to protein family HMM PF00857 YP_115163.1 identified by similarity to OMNI:NTL01SS01176; match to protein family HMM PF01724 YP_115164.1 identified by similarity to SP:P07002; match to protein family HMM PF02233 YP_115165.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm YP_115166.1 identified by similarity to SP:P25534; match to protein family HMM PF01360; match to protein family HMM TIGR01984; match to protein family HMM TIGR01988 YP_115167.1 identified by similarity to SP:P15034; match to protein family HMM PF00557; match to protein family HMM PF05195 YP_115168.1 the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown YP_115169.1 identified by similarity to GP:9107127; match to protein family HMM PF05164 YP_115170.1 identified by match to protein family HMM PF01812 YP_115171.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_115172.1 identified by match to protein family HMM PF00070 YP_115173.1 identified by similarity to GP:17427348 YP_115174.1 identified by similarity to GP:11193064 YP_115175.1 identified by similarity to GP:12024949; match to protein family HMM PF00893 YP_115177.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_115178.1 identified by similarity to GP:150994; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_115179.1 catalyzes the formation of dUMP from dUTP YP_115180.1 identified by similarity to SP:P24285; match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521 YP_115181.1 identified by match to protein family HMM PF02810 YP_115183.1 identified by similarity to GP:17132042; match to protein family HMM PF00107 YP_115184.1 identified by match to protein family HMM PF00877 YP_115185.1 identified by similarity to SP:P76291; match to protein family HMM TIGR00452 YP_115186.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_115187.1 identified by similarity to OMNI:CC3693; match to protein family HMM PF05494 YP_115188.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_115189.1 identified by similarity to SP:P15770; match to protein family HMM PF01488; match to protein family HMM TIGR00507 YP_115190.1 identified by similarity to SP:P34884; match to protein family HMM PF01187 YP_115191.1 identified by match to protein family HMM PF01839 YP_115192.1 identified by similarity to SP:P45770; match to protein family HMM PF00132 YP_115193.1 identified by similarity to OMNI:SP1284; match to protein family HMM PF04011 YP_115194.1 identified by similarity to OMNI:NTL03PA04369 YP_115195.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_115196.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_115197.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_115198.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_115199.1 identified by similarity to SP:P18785; match to protein family HMM PF00117; match to protein family HMM TIGR01855 YP_115200.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_115201.1 identified by similarity to OMNI:NTL01BH0567; match to protein family HMM PF00282 YP_115203.1 identified by similarity to GP:17427115; match to protein family HMM PF00903 YP_115205.1 identified by match to protein family HMM PF01609 YP_115207.1 identified by match to protein family HMM PF01047 YP_115208.1 identified by match to protein family HMM PF00037 YP_115209.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_115211.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_115212.1 identified by match to protein family HMM PF03658 YP_115213.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase YP_115214.1 identified by similarity to SP:P97054; match to protein family HMM PF04205; match to protein family HMM TIGR01947 YP_115215.1 identified by similarity to GP:17865303; match to protein family HMM PF03116; match to protein family HMM TIGR01946 YP_115216.1 identified by similarity to SP:P77611; match to protein family HMM PF00037; match to protein family HMM PF01512; match to protein family HMM TIGR01945 YP_115217.1 identified by similarity to SP:Q07394; match to protein family HMM PF00037; match to protein family HMM PF04060; match to protein family HMM TIGR01944 YP_115218.1 identified by similarity to SP:P76181; match to protein family HMM PF02508; match to protein family HMM TIGR01943 YP_115219.1 identified by similarity to GP:15980856; match to protein family HMM PF04384 YP_115221.1 identified by match to protein family HMM PF00156 YP_115222.1 identified by match to protein family HMM PF00313 YP_115224.1 identified by match to protein family HMM PF00324 YP_115225.1 identified by similarity to SP:P24206; match to protein family HMM PF01135; match to protein family HMM TIGR00080 YP_115226.1 identified by similarity to OMNI:NTL03PA04736; match to protein family HMM PF05359 YP_115228.1 identified by similarity to OMNI:NTL01MT00914 YP_115230.1 identified by similarity to SP:P09833; match to protein family HMM PF00005; match to protein family HMM PF03459 YP_115232.1 identified by match to protein family HMM PF01300 YP_115233.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining; maintains net negative superhelicity YP_115234.1 identified by similarity to OMNI:NTL01XF00924; match to protein family HMM PF04361 YP_115235.1 identified by similarity to SP:P43862; match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_115236.1 identified by similarity to GP:17427077; match to protein family HMM PF01476 YP_115237.1 identified by similarity to SP:P27251; match to protein family HMM PF01327; match to protein family HMM TIGR00079 YP_115238.1 identified by similarity to SP:P23882; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460 YP_115239.1 identified by similarity to SP:P36929; match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563 YP_115240.1 identified by similarity to OMNI:NTL01NM00155 YP_115241.1 identified by similarity to SP:Q04850; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_115242.1 identified by similarity to SP:Q04849; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199 YP_115243.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_115244.1 identified by similarity to GP:17428157 YP_115245.1 identified by similarity to GP:17427305; match to protein family HMM PF00581 YP_115246.1 identified by similarity to GP:9857266; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_115247.1 identified by similarity to GP:1913913; match to protein family HMM PF04744 YP_115248.1 identified by similarity to GP:1913912; match to protein family HMM PF02461 YP_115249.1 identified by match to protein family HMM PF04896 YP_115250.1 identified by similarity to SP:Q59579; match to protein family HMM PF01493 YP_115251.1 catalyzes the transfer of a formyl group from formylmethanofuran to tetrahydromethanopterin tetrahydromethanopterin YP_115252.1 identified by similarity to GP:1890210 YP_115253.1 identified by similarity to GP:1881465 YP_115254.1 identified by match to protein family HMM PF00288; match to protein family HMM TIGR00144 YP_115255.1 identified by similarity to GP:3237331 YP_115256.1 catalyzes the reversible formation of methenyl-H(4)methanopterin from N(5)-formyl-H(4)methanopterin YP_115257.1 identified by similarity to SP:P17116; match to protein family HMM TIGR00768 YP_115258.1 identified by similarity to GP:11193063; match to protein family HMM PF01874 YP_115259.1 identified by similarity to GP:11193064 YP_115260.1 identified by similarity to GP:11193065; match to protein family HMM PF00977 YP_115261.1 identified by similarity to GP:2621925; match to protein family HMM PF02655 YP_115263.1 identified by similarity to SP:P12679; match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00553 YP_115264.1 identified by match to protein family HMM PF00696 YP_115265.1 identified by match to protein family HMM PF01360 YP_115266.1 identified by similarity to GP:1098635; match to protein family HMM PF00432; match to protein family HMM TIGR01787 YP_115270.1 identified by similarity to OMNI:NTL01BH0675 YP_115271.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP YP_115272.1 identified by similarity to SP:P14926; match to protein family HMM PF00109; match to protein family HMM PF02801 YP_115273.1 identified by similarity to GP:15980332; match to protein family HMM PF01171 YP_115274.1 identified by similarity to OMNI:NTL01LM0636 YP_115276.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; match to protein family HMM TIGR02010 YP_115277.1 identified by similarity to SP:Q43884; match to protein family HMM PF00266 YP_115278.1 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049 YP_115279.1 identified by similarity to SP:Q59636; match to protein family HMM PF00334 YP_115280.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048 YP_115281.1 identified by similarity to GP:1162960; match to protein family HMM PF00515 YP_115282.1 identified by similarity to SP:P04804; match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442 YP_115283.1 identified by similarity to GP:9949974 YP_115284.1 identified by similarity to OMNI:NTL03PA03800; match to protein family HMM PF01011 YP_115285.1 identified by similarity to SP:P77254; match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00650 YP_115286.1 identified by similarity to SP:P76181; match to protein family HMM PF02508; match to protein family HMM TIGR01943 YP_115287.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen YP_115288.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen YP_115289.1 identified by similarity to SP:Q52715; match to protein family HMM PF03116; match to protein family HMM TIGR01946 YP_115290.1 identified by similarity to SP:P97054; match to protein family HMM PF04205; match to protein family HMM TIGR01947 YP_115291.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase YP_115292.1 identified by similarity to SP:P20625; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_115293.1 identified by match to protein family HMM PF01555 YP_115297.1 identified by similarity to OMNI:NTL01AT0449 YP_115298.1 identified by similarity to GP:4586893 YP_115300.1 identified by similarity to GP:4586892; match to protein family HMM PF04865 YP_115303.1 identified by match to protein family HMM PF04717; match to protein family HMM TIGR01644 YP_115304.1 identified by similarity to OMNI:NTL01ST4206 YP_115305.1 identified by similarity to OMNI:NTL01ST4207; match to protein family HMM PF05489 YP_115306.1 identified by similarity to OMNI:NTL01ST4208 YP_115307.1 identified by match to protein family HMM TIGR01760 YP_115308.1 identified by similarity to GP:8698823 YP_115309.1 identified by similarity to SP:P44181 YP_115310.1 identified by match to protein family HMM PF04985; match to protein family HMM TIGR01611 YP_115311.1 identified by match to protein family HMM PF04984 YP_115312.1 identified by similarity to GP:16502713 YP_115313.1 identified by similarity to GP:16502712 YP_115314.1 identified by similarity to GP:16502711 YP_115315.1 identified by similarity to GP:6723249 YP_115316.1 identified by similarity to OMNI:NTL01RS0859 YP_115317.1 identified by similarity to GP:16502708 YP_115318.1 identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635 YP_115319.1 includes an intein; identified by match to protein family HMM PF04233; match to protein family HMM TIGR01443; match to protein family HMM TIGR01641 YP_115324.1 identified by similarity to GP:16502705; match to protein family HMM PF06074 YP_115325.1 identified by similarity to OMNI:DRA0094 YP_115326.1 identified by similarity to GP:16502703 YP_115327.1 identified by similarity to SP:Q9T1W8 YP_115331.1 identified by similarity to GP:2315457 YP_115332.1 identified by similarity to GP:5453372 YP_115334.1 identified by match to protein family HMM PF00565; match to protein family HMM PF05901 YP_115335.1 identified by similarity to SP:Q47588 YP_115337.1 identified by similarity to OMNI:NMB0985 YP_115338.1 identified by similarity to SP:P02346; match to protein family HMM PF00216 YP_115339.1 identified by similarity to SP:P06023; match to protein family HMM PF07352 YP_115345.1 identified by similarity to GP:974770 YP_115346.1 identified by match to protein family HMM PF00665 YP_115349.1 identified by similarity to OMNI:NMB1004 YP_115350.1 identified by match to protein family HMM PF00717 YP_115351.1 identified by match to protein family HMM PF00165 YP_115352.1 identified by similarity to SP:P48837 YP_115353.1 identified by match to protein family HMM PF01609 YP_115354.1 identified by similarity to OMNI:NTL03PA01115 YP_115355.1 identified by similarity to OMNI:CC1988 YP_115356.1 identified by match to protein family HMM PF00892 YP_115357.1 identified by match to protein family HMM PF02826 YP_115358.1 identified by match to protein family HMM PF01205 YP_115359.1 identified by similarity to SP:P74618; match to protein family HMM TIGR01198 YP_115360.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_115361.1 identified by match to protein family HMM PF03330; match to protein family HMM TIGR00413 YP_115363.1 identified by match to protein family HMM PF00801 YP_115364.1 identified by similarity to SP:P24234; match to protein family HMM PF00625 YP_115365.1 identified by match to protein family HMM PF00072; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_115366.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_115367.1 identified by similarity to OMNI:VCA0581; match to protein family HMM PF01435 YP_115368.1 identified by similarity to SP:P27110; match to protein family HMM PF01625; match to protein family HMM TIGR00401 YP_115369.1 identified by similarity to SP:P45803; match to protein family HMM PF01430 YP_115371.1 identified by similarity to OMNI:NTL03PA05178; match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_115372.1 identified by similarity to SP:P22255; match to protein family HMM PF00459; match to protein family HMM TIGR01331 YP_115373.1 identified by similarity to OMNI:VC2487; match to protein family HMM TIGR00661 YP_115374.1 identified by match to protein family HMM PF01569 YP_115375.1 Involved in pteridine salvage and antifolate resistance YP_115376.1 identified by similarity to OMNI:NTL01EC00142; match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_115377.1 identified by similarity to SP:P31055; match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526 YP_115378.1 identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023 YP_115379.1 identified by similarity to SP:P36175; match to protein family HMM PF00814; match to protein family HMM TIGR00329 YP_115380.1 identified by similarity to SP:P02379; match to protein family HMM PF01165; match to protein family HMM TIGR00030 YP_115381.1 identified by match to protein family HMM PF02637 YP_115382.1 identified by similarity to SP:P02923; match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391 YP_115383.1 identified by similarity to SP:P00579; match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF04546 YP_115384.1 identified by similarity to SP:P19641; match to protein family HMM PF00348 YP_115385.1 identified by match to protein family HMM PF00155 YP_115387.1 identified by similarity to SP:P39594; match to protein family HMM PF02581; match to protein family HMM TIGR00693 YP_115388.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_115389.1 identified by similarity to SP:P06959; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817 YP_115390.1 identified by similarity to SP:P00391; match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM TIGR01350 YP_115391.1 identified by match to protein family HMM PF01209 YP_115392.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852 YP_115393.1 identified by similarity to OMNI:NTL01SM00503; match to protein family HMM PF00176; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851 YP_115394.1 identified by match to protein family HMM TIGR01439 YP_115395.1 identified by similarity to OMNI:NTL01SS00950 YP_115396.1 identified by similarity to OMNI:NTL01SM00500; match to protein family HMM PF06634 YP_115397.1 identified by match to protein family HMM PF02231 YP_115398.1 identified by similarity to GP:19916313; match to protein family HMM PF04326 YP_115399.1 identified by similarity to OMNI:NTL01SM00499 YP_115400.1 identified by similarity to GP:5738269 YP_115401.1 identified by similarity to GP:17427894 YP_115402.1 identified by similarity to SP:Q44091 YP_115403.1 identified by similarity to OMNI:VCA0641; match to protein family HMM PF04143 YP_115404.1 identified by similarity to GP:17427447 YP_115405.1 identified by similarity to SP:P55818 YP_115406.1 identified by similarity to SP:P55818 YP_115407.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_115408.1 identified by similarity to SP:P00832; match to protein family HMM PF00401; match to protein family HMM PF02823; match to protein family HMM TIGR01216 YP_115410.1 identified by similarity to GP:16504180; match to protein family HMM PF01725; match to protein family HMM TIGR00042 YP_115411.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_115412.1 identified by similarity to SP:P15558; match to protein family HMM PF01804 YP_115413.1 identified by similarity to OMNI:NTL03PA05336; match to protein family HMM PF03755; match to protein family HMM TIGR00255 YP_115414.1 identified by match to protein family HMM PF00165; match to protein family HMM TIGR01199 YP_115417.1 identified by similarity to SP:P06982; match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059 YP_115418.1 identified by similarity to SP:P24900; match to protein family HMM PF02463; match to protein family HMM TIGR00611 YP_115419.1 identified by match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663 YP_115420.1 identified by similarity to SP:P35891; match to protein family HMM PF00308; match to protein family HMM TIGR00362 YP_115421.1 identified by similarity to SP:P02437; match to protein family HMM PF00468; match to protein family HMM TIGR01030 YP_115422.1 identified by similarity to SP:P06277; match to protein family HMM PF00825; match to protein family HMM TIGR00188 YP_115423.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278 YP_115424.1 identified by similarity to SP:P25754; match to protein family HMM PF02096 YP_115425.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_115426.1 identified by similarity to SP:P25544; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_115427.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_115428.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis YP_115430.1 identified by similarity to GP:6899861; match to protein family HMM PF00215 YP_115431.1 identified by match to protein family HMM PF01380 YP_115432.1 Maintains the balance of metabolites in the pentose-phosphate pathway YP_115433.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_115434.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis YP_115436.1 identified by similarity to GP:6899861; match to protein family HMM PF00215 YP_115437.1 identified by match to protein family HMM PF01380 YP_115438.1 identified by similarity to SP:P23015; match to protein family HMM PF00485 YP_115439.1 identified by similarity to GP:14625828; match to protein family HMM PF01510 YP_115440.1 identified by similarity to OMNI:NTL03PA04524 YP_115441.1 identified by similarity to SP:P30748; match to protein family HMM PF02597; match to protein family HMM TIGR01682; match to protein family HMM TIGR01687 YP_115442.1 identified by similarity to SP:P30749; match to protein family HMM PF02391 YP_115443.1 identified by similarity to OMNI:NTL03PA01076 YP_115444.1 identified by similarity to SP:P76146; match to protein family HMM PF05249 YP_115445.1 identified by similarity to GP:17431649; match to protein family HMM PF07311 YP_115446.1 identified by similarity to SP:P30018; match to protein family HMM PF02600 YP_115447.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_115448.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane and the formation of precorrin-2 from uroporphyrin III and S-adenosyl-L-methionine by two sequential methylation reactions; functions in tetrapyrrole and heme biosynthesis YP_115449.1 identified by similarity to SP:P09128; match to protein family HMM PF07219 YP_115450.1 identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148 YP_115452.1 identified by similarity to SP:Q05197 YP_115453.1 identified by similarity to SP:P18196; match to protein family HMM PF03775; match to protein family HMM PF05209; match to protein family HMM TIGR01222 YP_115454.1 identified by similarity to SP:P18197; match to protein family HMM PF01656; match to protein family HMM TIGR01968 YP_115455.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell YP_115457.1 identified by similarity to SP:P09030; match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_115458.1 identified by similarity to GP:15023878; match to protein family HMM PF00180 YP_115459.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_115461.1 identified by similarity to GP:1245347; match to protein family HMM PF03062 YP_115463.1 identified by similarity to GP:17135441 YP_115464.1 identified by similarity to GP:17135440; similarity to OMNI:NT01MC2877 YP_115465.1 identified by similarity to OMNI:NTL01SS02600; match to protein family HMM PF00005 YP_115466.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00539 YP_115467.1 identified by similarity to GP:17131839; match to protein family HMM PF04020 YP_115468.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_115470.1 identified by similarity to OMNI:NTL03PA03071; match to protein family HMM PF01882 YP_115471.1 identified by similarity to OMNI:VCA0173 YP_115472.1 identified by similarity to GP:4838139; match to protein family HMM PF00092 YP_115473.1 identified by match to protein family HMM PF00515 YP_115474.1 identified by similarity to OMNI:NTL03PA03075 YP_115476.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_115477.1 identified by similarity to OMNI:NTL03PA05053; match to protein family HMM PF05036 YP_115478.1 identified by similarity to OMNI:VC0899; match to protein family HMM PF03641 YP_115479.1 identified by similarity to GP:21464612; match to protein family HMM PF03167 YP_115480.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space YP_115482.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan YP_115483.1 identified by match to protein family HMM PF00300 YP_115484.1 identified by similarity to OMNI:VC2455 YP_115486.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_115487.1 identified by match to protein family HMM PF00072 YP_115488.1 identified by similarity to SP:P30819; match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078 YP_115489.1 identified by similarity to SP:P39665 YP_115490.1 identified by similarity to GP:4104020; match to protein family HMM PF00691; match to protein family HMM PF02412 YP_115491.1 identified by similarity to SP:P08400; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_115492.1 identified by similarity to SP:P08402; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR02154 YP_115493.1 identified by similarity to SP:P03815; match to protein family HMM PF00004; match to protein family HMM PF02861 YP_115494.1 identified by similarity to OMNI:NTL03PA03284 YP_115495.1 identified by similarity to OMNI:NTL03PA04106; match to protein family HMM PF05114 YP_115496.1 identified by similarity to OMNI:NTL03PA03282 YP_115497.1 identified by similarity to OMNI:NTL03PA04736; match to protein family HMM PF05359 YP_115498.1 identified by similarity to OMNI:NTL01SM02805 YP_115499.1 identified by similarity to GP:9971722; match to protein family HMM PF01145 YP_115500.1 identified by similarity to OMNI:NTL03PA03455; match to protein family HMM PF03976