-- dump date 20140619_144915 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 243233000001 SEQ_END SEQ_END NC_002977.6 3304561 3304561 DR NC_002977.6; contig end 3304561..3304561 Methylococcus capsulatus str. Bath YP_112542.1 CDS gidA NC_002977.6 44 1921 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 44..1921 Methylococcus capsulatus str. Bath 3103716 YP_112543.1 CDS gidB NC_002977.6 1936 2553 D identified by similarity to SP:P17113; match to protein family HMM PF02527; match to protein family HMM TIGR00138; glucose-inhibited division protein B 1936..2553 Methylococcus capsulatus str. Bath 3103227 YP_112544.1 CDS MCA0003 NC_002977.6 2554 3342 D identified by match to protein family HMM PF01656; ParA family protein 2554..3342 Methylococcus capsulatus str. Bath 3103531 YP_112545.1 CDS MCA0004 NC_002977.6 3364 4212 D identified by similarity to SP:P26497; match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB family protein 3364..4212 Methylococcus capsulatus str. Bath 3104305 YP_112546.1 CDS MCA0005 NC_002977.6 4268 4639 D identified by similarity to SP:P25760; match to protein family HMM PF03899; ATP synthase I 4268..4639 Methylococcus capsulatus str. Bath 3102651 YP_112547.1 CDS atpB-1 NC_002977.6 4667 5446 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 4667..5446 Methylococcus capsulatus str. Bath 3102513 YP_112548.1 CDS atpE-1 NC_002977.6 5502 5747 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C 5502..5747 Methylococcus capsulatus str. Bath 3104954 YP_112549.1 CDS atpF NC_002977.6 5810 6283 D identified by similarity to SP:P00859; match to protein family HMM PF00430; match to protein family HMM TIGR01144; ATP synthase F0 subunit B 5810..6283 Methylococcus capsulatus str. Bath 3103660 YP_112550.1 CDS atpH NC_002977.6 6290 6826 D identified by similarity to SP:P00831; match to protein family HMM PF00213; match to protein family HMM TIGR01145; ATP synthase F1 subunit delta 6290..6826 Methylococcus capsulatus str. Bath 3103811 YP_112551.1 CDS atpA-1 NC_002977.6 6842 8383 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 6842..8383 Methylococcus capsulatus str. Bath 3104176 YP_112552.1 CDS atpG-1 NC_002977.6 8394 9257 D identified by similarity to SP:P00837; match to protein family HMM PF00231; match to protein family HMM TIGR01146; ATP synthase F1 subunit gamma 8394..9257 Methylococcus capsulatus str. Bath 3104702 YP_112553.1 CDS atpD-1 NC_002977.6 9293 10675 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 9293..10675 Methylococcus capsulatus str. Bath 3103591 YP_112554.1 CDS atpC-1 NC_002977.6 10701 11123 D identified by similarity to SP:P00832; match to protein family HMM PF00401; match to protein family HMM PF02823; match to protein family HMM TIGR01216; ATP synthase F1 subunit epsilon 10701..11123 Methylococcus capsulatus str. Bath 3103663 YP_112555.1 CDS glmU NC_002977.6 11242 12627 D identified by similarity to SP:P17114; match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM TIGR01173; UDP-N-acetylglucosamine pyrophosphorylase 11242..12627 Methylococcus capsulatus str. Bath 3102609 YP_112556.1 CDS glmS NC_002977.6 12615 14447 D identified by similarity to SP:P17169; match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135; glucosamine--fructose-6-phosphate aminotransferase 12615..14447 Methylococcus capsulatus str. Bath 3104608 YP_112557.1 CDS metG NC_002977.6 14534 16618 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 14534..16618 Methylococcus capsulatus str. Bath 3102580 YP_112558.1 CDS bioA NC_002977.6 16626 17981 D catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 16626..17981 Methylococcus capsulatus str. Bath 3102887 YP_112559.1 CDS MCA0018 NC_002977.6 17988 18719 D identified by match to protein family HMM PF04452; match to protein family HMM TIGR00046; hypothetical protein 17988..18719 Methylococcus capsulatus str. Bath 3102640 YP_112560.1 CDS MCA0019 NC_002977.6 18756 19217 D identified by similarity to OMNI:NTL03PA01045; hypothetical protein 18756..19217 Methylococcus capsulatus str. Bath 3104337 YP_112561.1 CDS djlA NC_002977.6 19221 20051 R functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein complement(19221..20051) Methylococcus capsulatus str. Bath 3102559 YP_112562.1 CDS purC NC_002977.6 20139 21032 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 20139..21032 Methylococcus capsulatus str. Bath 3105016 YP_112563.1 CDS cca NC_002977.6 21053 22330 R identified by similarity to SP:P06961; match to protein family HMM PF01743; match to protein family HMM PF01966; tRNA nucleotidyltransferase complement(21053..22330) Methylococcus capsulatus str. Bath 3102667 YP_112564.1 CDS MCA0023 NC_002977.6 22396 23280 D identified by similarity to OMNI:NTL03PA00341; match to protein family HMM PF01925; hypothetical protein 22396..23280 Methylococcus capsulatus str. Bath 3103683 YP_112565.1 CDS pgl-1 NC_002977.6 23287 23994 R identified by similarity to GP:4558604; match to protein family HMM TIGR01198; 6-phosphogluconolactonase complement(23287..23994) Methylococcus capsulatus str. Bath 3103654 YP_112566.1 CDS zwf-1 NC_002977.6 23996 25483 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(23996..25483) Methylococcus capsulatus str. Bath 3102311 YP_112567.1 CDS MCA0026 NC_002977.6 25693 28341 R identified by similarity to SP:P08764; match to protein family HMM PF04851; type III restriction-modification system, R subunit complement(25693..28341) Methylococcus capsulatus str. Bath 3102063 YP_112568.1 CDS MCA0027 NC_002977.6 28538 29773 R identified by match to protein family HMM PF00872; ISMca5, transposase complement(28538..29773) Methylococcus capsulatus str. Bath 3102403 YP_112569.1 CDS MCA0028 NC_002977.6 29878 30168 R identified by similarity to GP:19913854; match to protein family HMM PF01909; nucleotidyltransferase complement(29878..30168) Methylococcus capsulatus str. Bath 3103672 YP_112570.1 CDS MCA0029 NC_002977.6 30165 30551 R identified by similarity to OMNI:NMB1852; match to protein family HMM PF04480; hypothetical protein complement(30165..30551) Methylococcus capsulatus str. Bath 3103808 YP_112571.1 CDS MCA0031 NC_002977.6 32445 32984 D identified by similarity to OMNI:PG0277; ISMca6, transposase, OrfA 32445..32984 Methylococcus capsulatus str. Bath 3103937 YP_112572.1 CDS MCA0032 NC_002977.6 32956 33549 D identified by similarity to OMNI:PG0277; ISMca6, transposase, OrfB 32956..33549 Methylococcus capsulatus str. Bath 3104102 YP_112573.1 CDS dinD NC_002977.6 33699 34586 R identified by similarity to SP:P23840; DNA-damage-inducible protein D complement(33699..34586) Methylococcus capsulatus str. Bath 3102996 YP_112574.1 CDS MCA0034 NC_002977.6 34606 35553 R hypothetical protein complement(34606..35553) Methylococcus capsulatus str. Bath 3103223 YP_112575.1 CDS MCA0035 NC_002977.6 35550 36155 R hypothetical protein complement(35550..36155) Methylococcus capsulatus str. Bath 3104338 YP_112576.1 CDS MCA0036 NC_002977.6 36152 37243 R hypothetical protein complement(36152..37243) Methylococcus capsulatus str. Bath 3104322 YP_112577.1 CDS edd NC_002977.6 38085 39914 D catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 38085..39914 Methylococcus capsulatus str. Bath 3103171 YP_112578.1 CDS eda NC_002977.6 39904 40569 D identified by similarity to SP:P10177; match to protein family HMM PF01081; match to protein family HMM TIGR01182; 4-hydroxy-2-ketovalerate aldolase 39904..40569 Methylococcus capsulatus str. Bath 3104233 YP_112579.1 CDS MCA0039 NC_002977.6 40860 41498 D identified by similarity to OMNI:NTL02ML4093; match to protein family HMM PF02734; dihydroxyacetone phosphatase 40860..41498 Methylococcus capsulatus str. Bath 3104088 YP_112580.1 CDS MCA0040 NC_002977.6 41511 42500 R identified by similarity to OMNI:NTL02ML4088; match to protein family HMM PF02733; dihydroxyacetone kinase complement(41511..42500) Methylococcus capsulatus str. Bath 3104091 YP_112581.1 CDS MCA0041 NC_002977.6 42530 43546 R identified by similarity to OMNI:NTL01BH3849; match to protein family HMM PF01408; match to protein family HMM PF02894; Gfo/Idh/MocA family oxidoreductase complement(42530..43546) Methylococcus capsulatus str. Bath 3104315 YP_112582.1 CDS MCA0042 NC_002977.6 43745 44251 D identified by similarity to SP:Q9BGI1; match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein 43745..44251 Methylococcus capsulatus str. Bath 3103930 YP_112583.1 CDS rpiB NC_002977.6 44293 44721 D identified by similarity to SP:P37351; match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120; ribose 5-phosphate isomerase B 44293..44721 Methylococcus capsulatus str. Bath 3103899 YP_112584.1 CDS MCA0044 NC_002977.6 44934 45155 D identified by similarity to GP:17132485; hypothetical protein 44934..45155 Methylococcus capsulatus str. Bath 3103384 YP_112585.1 CDS MCA0045 NC_002977.6 45165 45833 R Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures; endonuclease V complement(45165..45833) Methylococcus capsulatus str. Bath 3104052 YP_112586.1 CDS MCA0046 NC_002977.6 45837 46625 R identified by similarity to OMNI:CC1747; match to protein family HMM PF03819; match to protein family HMM TIGR00444; MazG family protein complement(45837..46625) Methylococcus capsulatus str. Bath 3103304 YP_112587.1 CDS MCA0047 NC_002977.6 46628 47560 R identified by match to protein family HMM PF00294; carbohydrate kinase complement(46628..47560) Methylococcus capsulatus str. Bath 3103486 YP_112588.1 CDS dgkA NC_002977.6 47616 47978 R identified by similarity to SP:P00556; match to protein family HMM PF01219; diacylglycerol kinase complement(47616..47978) Methylococcus capsulatus str. Bath 3104297 YP_112589.1 CDS MCA0049 NC_002977.6 48224 50446 D identified by match to protein family HMM PF00553; cellulose-binding domain-containing protein 48224..50446 Methylococcus capsulatus str. Bath 3103006 YP_112590.1 CDS MCA0050 NC_002977.6 50597 51697 R identified by match to protein family HMM PF01609; ISMca1, transposase complement(50597..51697) Methylococcus capsulatus str. Bath 3103650 YP_112591.1 CDS gcvH NC_002977.6 51863 52246 R identified by similarity to SP:P23884; match to protein family HMM PF01597; match to protein family HMM TIGR00527; glycine cleavage system H protein complement(51863..52246) Methylococcus capsulatus str. Bath 3103108 YP_112592.1 CDS MCA0052 NC_002977.6 52436 53521 D identified by similarity to SP:P21590; match to protein family HMM PF01883; mrP protein 52436..53521 Methylococcus capsulatus str. Bath 3103568 YP_112593.1 CDS dcd NC_002977.6 53532 54098 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 53532..54098 Methylococcus capsulatus str. Bath 3103476 YP_112594.1 CDS hemL NC_002977.6 54127 55407 D identified by similarity to SP:P23893; match to protein family HMM PF00202; match to protein family HMM TIGR00713; glutamate-1-semialdehyde-2,1-aminomutase 54127..55407 Methylococcus capsulatus str. Bath 3103970 YP_112595.1 CDS MCA0055 NC_002977.6 55404 57329 D identified by match to protein family HMM PF00597; DedA family protein 55404..57329 Methylococcus capsulatus str. Bath 3103906 YP_112596.1 CDS rho NC_002977.6 57326 58582 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(57326..58582) Methylococcus capsulatus str. Bath 3104250 YP_112597.1 CDS trxA-1 NC_002977.6 58769 59098 R identified by similarity to SP:P00274; match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin complement(58769..59098) Methylococcus capsulatus str. Bath 3103609 YP_112598.1 CDS MCA0058 NC_002977.6 59262 60029 R identified by similarity to SP:Q59601; match to protein family HMM PF01553; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(59262..60029) Methylococcus capsulatus str. Bath 3103625 YP_112599.1 CDS MCA0059 NC_002977.6 60004 60780 R identified by similarity to OMNI:NTL03PA04351; hypothetical protein complement(60004..60780) Methylococcus capsulatus str. Bath 3103267 YP_112600.1 CDS MCA0060 NC_002977.6 60908 61717 R identified by similarity to OMNI:VC2444; general secretion pathway protein B complement(60908..61717) Methylococcus capsulatus str. Bath 3103026 YP_112601.1 CDS exeA NC_002977.6 61739 63388 R identified by similarity to SP:P45754; match to protein family HMM PF01471; general secretion pathway protein A complement(61739..63388) Methylococcus capsulatus str. Bath 3103088 YP_112602.1 CDS MCA0062 NC_002977.6 63501 64397 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(63501..64397) Methylococcus capsulatus str. Bath 3104869 YP_112603.1 CDS MCA0063 NC_002977.6 64477 65856 D identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 64477..65856 Methylococcus capsulatus str. Bath 3102450 YP_112604.1 CDS MCA0064 NC_002977.6 65846 67171 D identified by match to protein family HMM PF05193; hypothetical protein 65846..67171 Methylococcus capsulatus str. Bath 3102554 YP_112605.1 CDS MCA0065 NC_002977.6 67161 67727 D identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; methyltransferase 67161..67727 Methylococcus capsulatus str. Bath 3102473 YP_112606.1 CDS coaD NC_002977.6 67724 68212 D identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01510; pantetheine-phosphate adenylyltransferase 67724..68212 Methylococcus capsulatus str. Bath 3103520 YP_112607.1 CDS glgP-1 NC_002977.6 68235 70733 R identified by similarity to SP:P11217; match to protein family HMM PF00343; match to protein family HMM TIGR02093; glycogen phosphorylase complement(68235..70733) Methylococcus capsulatus str. Bath 3104893 YP_112608.1 CDS MCA0068 NC_002977.6 70801 71184 R polyphosphate kinase complement(70801..71184) Methylococcus capsulatus str. Bath 3103736 YP_112609.1 CDS MCA0069 NC_002977.6 71264 71794 D hypothetical protein 71264..71794 Methylococcus capsulatus str. Bath 3103109 YP_112610.1 CDS MCA0070 NC_002977.6 71806 73416 D identified by match to protein family HMM PF02690; Na/Pi-cotransporter family protein 71806..73416 Methylococcus capsulatus str. Bath 3102049 YP_112611.1 CDS MCA0071 NC_002977.6 73668 74252 R identified by match to protein family HMM PF01871; match to protein family HMM TIGR00296; hypothetical protein complement(73668..74252) Methylococcus capsulatus str. Bath 3105039 YP_112612.1 CDS MCA0072 NC_002977.6 74221 75024 R identified by similarity to SP:O67039; match to protein family HMM PF01875; hypothetical protein complement(74221..75024) Methylococcus capsulatus str. Bath 3103347 YP_112613.1 CDS MCA0073 NC_002977.6 75126 76223 D identified by similarity to OMNI:MT3225; match to protein family HMM PF04055; pyruvate formate lyase-activating enzyme 75126..76223 Methylococcus capsulatus str. Bath 3103968 YP_112614.1 CDS gst NC_002977.6 76264 76875 D identified by similarity to SP:P39100; match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase 76264..76875 Methylococcus capsulatus str. Bath 3102765 YP_112615.1 CDS MCA0075 NC_002977.6 76932 77942 D identified by match to protein family HMM PF01764; lipase 76932..77942 Methylococcus capsulatus str. Bath 3104792 YP_112616.1 CDS MCA0076 NC_002977.6 78087 79778 D patatin family protein 78087..79778 Methylococcus capsulatus str. Bath 3104372 YP_112617.1 CDS MCA0077 NC_002977.6 79817 80146 D identified by similarity to GP:17427297; hypothetical protein 79817..80146 Methylococcus capsulatus str. Bath 3103592 YP_112618.1 CDS MCA0079 NC_002977.6 80931 84017 R AcrB/AcrD/AcrF family protein complement(80931..84017) Methylococcus capsulatus str. Bath 3104472 YP_112619.1 CDS MCA0080 NC_002977.6 84017 84919 R hypothetical protein complement(84017..84919) Methylococcus capsulatus str. Bath 3102368 YP_112620.1 CDS slyD NC_002977.6 85182 85664 D identified by similarity to SP:P30856; match to protein family HMM PF00254; FKBP-type peptidyl-prolyl cis-trans isomerase 85182..85664 Methylococcus capsulatus str. Bath 3103555 YP_112621.1 CDS MCA0082 NC_002977.6 85707 87020 R identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125; MiaB-like tRNA modifying enzyme YliG complement(85707..87020) Methylococcus capsulatus str. Bath 3104493 YP_112622.1 CDS MCA0083 NC_002977.6 87198 88115 D identified by similarity to OMNI:NTL01SS01907; UbiE/COQ5 family methlytransferase 87198..88115 Methylococcus capsulatus str. Bath 3102910 YP_112623.1 CDS MCA0084 NC_002977.6 88186 89226 D hypothetical protein 88186..89226 Methylococcus capsulatus str. Bath 3103231 YP_112624.1 CDS MCA0085 NC_002977.6 89266 89619 D hypothetical protein 89266..89619 Methylococcus capsulatus str. Bath 3103216 YP_112625.1 CDS pilE NC_002977.6 89664 90116 R identified by similarity to OMNI:NTL03PA04557; match to protein family HMM PF00114; type 4 fimbrial biogenesis protein PilE complement(89664..90116) Methylococcus capsulatus str. Bath 3103989 YP_112626.1 CDS MCA0087 NC_002977.6 90123 93521 R hypothetical protein complement(90123..93521) Methylococcus capsulatus str. Bath 3104693 YP_112627.1 CDS MCA0088 NC_002977.6 93547 94095 R hypothetical protein complement(93547..94095) Methylococcus capsulatus str. Bath 3104695 YP_112628.1 CDS MCA0089 NC_002977.6 94123 95196 R identified by similarity to GP:17429699; pilin-like protein complement(94123..95196) Methylococcus capsulatus str. Bath 3104913 YP_112629.1 CDS MCA0090 NC_002977.6 95226 95816 R identified by similarity to OMNI:NTL03PA04552; type IV fimbrial biogenesis protein PilV complement(95226..95816) Methylococcus capsulatus str. Bath 3104848 YP_112630.1 CDS MCA0091 NC_002977.6 95813 96361 R identified by similarity to GP:17431765; hypothetical protein complement(95813..96361) Methylococcus capsulatus str. Bath 3102475 YP_112631.1 CDS MCA0092 NC_002977.6 96425 97483 R identified by similarity to SP:P32066; RNA 2'-O-ribose methyltransferase complement(96425..97483) Methylococcus capsulatus str. Bath 3104296 YP_112632.1 CDS MCA0093 NC_002977.6 97563 98783 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 97563..98783 Methylococcus capsulatus str. Bath 3104451 YP_112633.1 CDS MCA0094 NC_002977.6 98827 99231 D identified by match to protein family HMM PF01398; Mov34/MPN/PAD-1 family protein 98827..99231 Methylococcus capsulatus str. Bath 3104783 YP_112634.1 CDS MCA0095 NC_002977.6 99236 101890 R identified by similarity to SP:P37278; match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation transporter E1-E2 family ATPase complement(99236..101890) Methylococcus capsulatus str. Bath 3104594 YP_112635.1 CDS MCA0096 NC_002977.6 102004 103104 D identified by match to protein family HMM PF01609; ISMca1, transposase 102004..103104 Methylococcus capsulatus str. Bath 3102799 YP_112636.1 CDS gatB NC_002977.6 103385 104815 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(103385..104815) Methylococcus capsulatus str. Bath 3104460 YP_112637.1 CDS gatA NC_002977.6 104842 106299 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(104842..106299) Methylococcus capsulatus str. Bath 3102578 YP_112638.1 CDS gatC NC_002977.6 106353 106640 R identified by similarity to SP:O06492; match to protein family HMM PF02686; match to protein family HMM TIGR00135; glutamyl-tRNA(Gln) amidotransferase subunit C complement(106353..106640) Methylococcus capsulatus str. Bath 3102309 YP_112639.1 CDS mreB NC_002977.6 106745 107788 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 106745..107788 Methylococcus capsulatus str. Bath 3102764 YP_112640.1 CDS mreC NC_002977.6 107807 108709 D identified by similarity to SP:P16926; match to protein family HMM PF04085; match to protein family HMM TIGR00219; rod shape-determining protein MreC 107807..108709 Methylococcus capsulatus str. Bath 3102561 YP_112641.1 CDS mreD NC_002977.6 108696 109187 D identified by similarity to SP:P16927; match to protein family HMM PF04093; rod shape-determining protein MreD 108696..109187 Methylococcus capsulatus str. Bath 3103344 YP_112642.1 CDS mrdA NC_002977.6 109218 111053 D identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 2 109218..111053 Methylococcus capsulatus str. Bath 3103518 YP_112643.1 CDS rodA NC_002977.6 111050 112183 D identified by similarity to SP:P15035; match to protein family HMM PF01098; match to protein family HMM TIGR02210; rod shape-determining protein RodA 111050..112183 Methylococcus capsulatus str. Bath 3102616 YP_112644.1 CDS MCA0105 NC_002977.6 112342 113520 D identified by similarity to SP:P08506; match to protein family HMM PF00144; match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase 112342..113520 Methylococcus capsulatus str. Bath 3103059 YP_112645.1 CDS MCA0106 NC_002977.6 113538 114389 D identified by similarity to SP:P54692; match to protein family HMM PF01063; D-amino acid aminotransferase 113538..114389 Methylococcus capsulatus str. Bath 3102068 YP_112646.1 CDS MCA0107 NC_002977.6 114386 114649 D identified by similarity to GP:17427335; match to protein family HMM PF04359; hypothetical protein 114386..114649 Methylococcus capsulatus str. Bath 3104125 YP_112647.1 CDS mgtE NC_002977.6 114744 116189 D identified by similarity to OMNI:NTL03PA00914; match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter 114744..116189 Methylococcus capsulatus str. Bath 3103451 YP_112648.1 CDS lipB NC_002977.6 116196 116819 D identified by similarity to SP:Q9PDV9; match to protein family HMM PF03099; match to protein family HMM TIGR00214; lipoate-protein ligase B 116196..116819 Methylococcus capsulatus str. Bath 3104249 YP_112649.1 CDS lipA NC_002977.6 116816 117784 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 116816..117784 Methylococcus capsulatus str. Bath 3103690 YP_112650.1 CDS MCA0111 NC_002977.6 117877 118479 D identified by similarity to OMNI:MT0787; hypothetical protein 117877..118479 Methylococcus capsulatus str. Bath 3104692 YP_112651.1 CDS ppa NC_002977.6 118557 119105 D identified by similarity to SP:P17288; match to protein family HMM PF00719; inorganic pyrophosphatase 118557..119105 Methylococcus capsulatus str. Bath 3104561 YP_112652.1 CDS hoxW NC_002977.6 119053 119595 R identified by similarity to GP:1313919; HoxW protein complement(119053..119595) Methylococcus capsulatus str. Bath 3103299 YP_112653.1 CDS MCA0114 NC_002977.6 119597 121081 R identified by similarity to SP:P22320; NAD-reducing hydrogenase subunit beta complement(119597..121081) Methylococcus capsulatus str. Bath 3103239 YP_112654.1 CDS hemN NC_002977.6 121147 122544 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(121147..122544) Methylococcus capsulatus str. Bath 3102860 YP_112655.1 CDS MCA0116 NC_002977.6 122641 123078 D identified by similarity to GP:19914581; match to protein family HMM PF06803; hypothetical protein 122641..123078 Methylococcus capsulatus str. Bath 3102999 YP_112656.1 CDS MCA0117 NC_002977.6 123087 123560 D identified by similarity to OMNI:VC1575; hypothetical protein 123087..123560 Methylococcus capsulatus str. Bath 3103327 YP_112657.1 CDS MCA0118 NC_002977.6 123533 124576 R identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein complement(123533..124576) Methylococcus capsulatus str. Bath 3103606 YP_112658.1 CDS MCA0119 NC_002977.6 124746 125204 R identified by match to protein family HMM PF00583; acetyltransferase complement(124746..125204) Methylococcus capsulatus str. Bath 3102815 YP_112659.1 CDS MCA0120 NC_002977.6 125396 126508 D identified by match to protein family HMM PF01594; hypothetical protein 125396..126508 Methylococcus capsulatus str. Bath 3104254 YP_112660.1 CDS MCA0121 NC_002977.6 126518 128167 R hypothetical protein complement(126518..128167) Methylococcus capsulatus str. Bath 3104575 YP_112661.1 CDS MCA0122 NC_002977.6 128160 129140 R identified by similarity to GP:9106685; hypothetical protein complement(128160..129140) Methylococcus capsulatus str. Bath 3103269 YP_112662.1 CDS MCA0123 NC_002977.6 129258 129545 R hypothetical protein complement(129258..129545) Methylococcus capsulatus str. Bath 3104197 YP_112663.1 CDS MCA0124 NC_002977.6 129689 129907 R hypothetical protein complement(129689..129907) Methylococcus capsulatus str. Bath 3102901 YP_112664.1 CDS MCA0125 NC_002977.6 129888 130016 R hypothetical protein complement(129888..130016) Methylococcus capsulatus str. Bath 3102679 YP_112665.1 CDS MCA0126 NC_002977.6 131324 131806 R hypothetical protein complement(131324..131806) Methylococcus capsulatus str. Bath 3102830 YP_112666.1 CDS MCA0127 NC_002977.6 132057 133697 D identified by similarity to SP:P75790; match to protein family HMM PF00005; ABC transporter ATP-binding protein 132057..133697 Methylococcus capsulatus str. Bath 3102268 YP_112667.1 CDS MCA0128 NC_002977.6 133709 134128 D identified by similarity to GP:17133833; match to protein family HMM PF00472; peptidyl-tRNA hydrolase domain-containing protein 133709..134128 Methylococcus capsulatus str. Bath 3103925 YP_112668.1 CDS apbE NC_002977.6 134125 135210 R identified by similarity to SP:P41780; match to protein family HMM PF02424; thiamin biosynthesis lipoprotein ApbE complement(134125..135210) Methylococcus capsulatus str. Bath 3102831 YP_112669.1 CDS MCA0130 NC_002977.6 135314 135628 R hypothetical protein complement(135314..135628) Methylococcus capsulatus str. Bath 3104743 YP_112670.1 CDS MCA0131 NC_002977.6 135692 136360 D identified by similarity to OMNI:NTL03PA00111; hypothetical protein 135692..136360 Methylococcus capsulatus str. Bath 3104862 YP_112671.1 CDS MCA0132 NC_002977.6 136367 136987 D identified by similarity to OMNI:NTL03PA00112; hypothetical protein 136367..136987 Methylococcus capsulatus str. Bath 3103127 YP_112672.1 CDS ftsY NC_002977.6 136994 139009 D identified by match to protein family HMM PF00448; match to protein family HMM PF02628; match to protein family HMM PF02881; match to protein family HMM TIGR00064; cytochrome oxidase assembly family protein/cell division protein FtsY 136994..139009 Methylococcus capsulatus str. Bath 3104032 YP_112673.1 CDS ftsE NC_002977.6 139014 139676 D identified by similarity to SP:P10115; match to protein family HMM PF00005; cell division ATP-binding protein FtsE 139014..139676 Methylococcus capsulatus str. Bath 3104660 YP_112674.1 CDS MCA0135 NC_002977.6 139769 140671 D identified by similarity to SP:P10122; match to protein family HMM PF02687; protein insertion permease FtsX 139769..140671 Methylococcus capsulatus str. Bath 3103268 YP_112675.1 CDS rpoH NC_002977.6 140773 141633 D binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 140773..141633 Methylococcus capsulatus str. Bath 3103365 YP_112676.1 CDS metF NC_002977.6 141683 142552 R identified by similarity to SP:P00394; match to protein family HMM PF02219; match to protein family HMM TIGR00676; 5,10-methylenetetrahydrofolate reductase complement(141683..142552) Methylococcus capsulatus str. Bath 3103529 YP_112677.1 CDS ahcY NC_002977.6 142710 144128 R catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase complement(142710..144128) Methylococcus capsulatus str. Bath 3104008 YP_112678.1 CDS metK-1 NC_002977.6 144326 145495 R methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(144326..145495) Methylococcus capsulatus str. Bath 3104970 YP_112679.1 CDS MCA0140 NC_002977.6 145748 146482 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 145748..146482 Methylococcus capsulatus str. Bath 3102337 YP_112680.1 CDS MCA0141 NC_002977.6 146679 147149 D identified by similarity to GP:17430491; match to protein family HMM PF01161; match to protein family HMM TIGR00481; hypothetical protein 146679..147149 Methylococcus capsulatus str. Bath 3104696 YP_112681.1 CDS cax-1 NC_002977.6 147294 148376 D identified by match to protein family HMM PF01699; match to protein family HMM TIGR00378; calcium/proton exchanger 147294..148376 Methylococcus capsulatus str. Bath 3103491 YP_112682.1 CDS mdoD NC_002977.6 148339 149970 D involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D 148339..149970 Methylococcus capsulatus str. Bath 3103503 YP_112683.1 CDS MCA0145 NC_002977.6 150561 151805 D hypothetical protein 150561..151805 Methylococcus capsulatus str. Bath 3105078 YP_112684.1 CDS MCA0146 NC_002977.6 151827 152975 D hypothetical protein 151827..152975 Methylococcus capsulatus str. Bath 3104638 YP_112685.1 CDS MCA0147 NC_002977.6 153160 154554 D identified by similarity to GP:4972659; match to protein family HMM PF02397; polysaccharide biosynthesis protein 153160..154554 Methylococcus capsulatus str. Bath 3105023 YP_112686.1 CDS MCA0148 NC_002977.6 154610 155443 D identified by similarity to SP:Q46629; match to protein family HMM PF02563; capsular polysaccharide export protein 154610..155443 Methylococcus capsulatus str. Bath 3102338 YP_112687.1 CDS MCA0149 NC_002977.6 155447 156865 D identified by match to protein family HMM PF02706; chain length determinant protein 155447..156865 Methylococcus capsulatus str. Bath 3102859 YP_112688.1 CDS MCA0150 NC_002977.6 156890 157759 D hypothetical protein 156890..157759 Methylococcus capsulatus str. Bath 3105015 YP_112689.1 CDS MCA0151 NC_002977.6 157813 159324 D hypothetical protein 157813..159324 Methylococcus capsulatus str. Bath 3103836 YP_112690.1 CDS MCA0152 NC_002977.6 159293 160504 D identified by match to protein family HMM PF00534; glycosyl transferase family protein 159293..160504 Methylococcus capsulatus str. Bath 3104172 YP_112691.1 CDS MCA0153 NC_002977.6 160501 162054 D hypothetical protein 160501..162054 Methylococcus capsulatus str. Bath 3104421 YP_112692.1 CDS MCA0154 NC_002977.6 162081 163163 D identified by similarity to OMNI:VC0925; match to protein family HMM PF00534; glycosyl transferase family protein 162081..163163 Methylococcus capsulatus str. Bath 3104647 YP_112693.1 CDS MCA0155 NC_002977.6 163290 164384 D hypothetical protein 163290..164384 Methylococcus capsulatus str. Bath 3102122 YP_112694.1 CDS MCA0157 NC_002977.6 165395 169414 R hypothetical protein complement(165395..169414) Methylococcus capsulatus str. Bath 3102919 YP_112695.1 CDS mpl NC_002977.6 169485 170849 R identified by similarity to SP:P37773; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01081; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase complement(169485..170849) Methylococcus capsulatus str. Bath 3102913 YP_112696.1 CDS apaH NC_002977.6 171127 171963 D hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 171127..171963 Methylococcus capsulatus str. Bath 3104181 YP_112697.1 CDS MCA0160 NC_002977.6 172102 172326 R hypothetical protein complement(172102..172326) Methylococcus capsulatus str. Bath 3103019 YP_112698.1 CDS MCA0161 NC_002977.6 172400 173236 R identified by similarity to SP:P19932; match to protein family HMM PF04809; hydrogenase expression/formation protein complement(172400..173236) Methylococcus capsulatus str. Bath 3102510 YP_112699.1 CDS MCA0162 NC_002977.6 173279 173884 R identified by similarity to SP:Q03004; match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140; match to protein family HMM TIGR00141; hydrogenase expression/formation protein complement(173279..173884) Methylococcus capsulatus str. Bath 3103626 YP_112700.1 CDS MCA0163 NC_002977.6 173889 174575 R identified by similarity to SP:Q43953; match to protein family HMM PF01292; match to protein family HMM TIGR02125; nickel-iron hydrogenase, small subunit complement(173889..174575) Methylococcus capsulatus str. Bath 3102455 YP_112701.1 CDS MCA0164 NC_002977.6 174586 175164 R identified by similarity to GP:19421553; match to protein family HMM PF04955; nickel-iron hydrogenase, accessory protein complement(174586..175164) Methylococcus capsulatus str. Bath 3103229 YP_112702.1 CDS MCA0165 NC_002977.6 175203 176996 R identified by similarity to SP:P18636; match to protein family HMM PF00374; nickel-iron hydrogenase, large subunit complement(175203..176996) Methylococcus capsulatus str. Bath 3103582 YP_112703.1 CDS MCA0166 NC_002977.6 177012 178100 R identified by similarity to SP:P21950; match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; nickel-iron hydrogenase, small subunit complement(177012..178100) Methylococcus capsulatus str. Bath 3102900 YP_112704.1 CDS MCA0167 NC_002977.6 178279 178866 R identified by similarity to GP:7380649; match to protein family HMM PF04367; hypothetical protein complement(178279..178866) Methylococcus capsulatus str. Bath 3103913 YP_112705.1 CDS MCA0168 NC_002977.6 179106 179753 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 179106..179753 Methylococcus capsulatus str. Bath 3102828 YP_112706.1 CDS MCA0169 NC_002977.6 179753 180544 D identified by similarity to OMNI:TM0193; match to protein family HMM PF03649; match to protein family HMM TIGR00245; ABC transporter permease 179753..180544 Methylococcus capsulatus str. Bath 3104612 YP_112707.1 CDS MCA0170 NC_002977.6 180589 181929 R identified by similarity to OMNI:NTL03PA00287; match to protein family HMM PF00487; fatty acid desaturase complement(180589..181929) Methylococcus capsulatus str. Bath 3104788 YP_112708.1 CDS MCA0171 NC_002977.6 181951 182469 R identified by similarity to GP:17427325; lipoprotein complement(181951..182469) Methylococcus capsulatus str. Bath 3102331 YP_112709.1 CDS MCA0172 NC_002977.6 182469 183383 R identified by similarity to GP:17427324; match to protein family HMM PF02470; Mce family protein complement(182469..183383) Methylococcus capsulatus str. Bath 3103434 YP_112710.1 CDS MCA0173 NC_002977.6 183385 184155 R identified by similarity to OMNI:NTL01SM01832; match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(183385..184155) Methylococcus capsulatus str. Bath 3103729 YP_112711.1 CDS MCA0174 NC_002977.6 184152 185372 R identified by match to protein family HMM PF02405; ABC transporter permease complement(184152..185372) Methylococcus capsulatus str. Bath 3102330 YP_112712.1 CDS MCA0175 NC_002977.6 185402 185557 D hypothetical protein 185402..185557 Methylococcus capsulatus str. Bath 3103423 YP_112713.1 CDS MCA0176 NC_002977.6 185617 187227 R identified by similarity to GP:17431587; match to protein family HMM PF02321; match to protein family HMM TIGR01845; outer membrane efflux protein complement(185617..187227) Methylococcus capsulatus str. Bath 3104998 YP_112714.1 CDS MCA0177 NC_002977.6 187233 188453 R identified by similarity to GP:17432073; match to protein family HMM TIGR01730; hypothetical protein complement(187233..188453) Methylococcus capsulatus str. Bath 3102857 YP_112715.1 CDS MCA0178 NC_002977.6 188453 191623 R AcrB/AcrD/AcrF family protein complement(188453..191623) Methylococcus capsulatus str. Bath 3104714 YP_112716.1 CDS MCA0179 NC_002977.6 191804 192571 D hypothetical protein 191804..192571 Methylococcus capsulatus str. Bath 3104744 YP_112717.1 CDS MCA0180 NC_002977.6 193094 193498 D hypothetical protein 193094..193498 Methylococcus capsulatus str. Bath 3103222 YP_112718.1 CDS MCA0181 NC_002977.6 193505 193699 R hypothetical protein complement(193505..193699) Methylococcus capsulatus str. Bath 3102052 YP_112719.1 CDS MCA0182 NC_002977.6 193696 195099 R identified by match to protein family HMM PF01565; match to protein family HMM PF02913; oxidoreductase, FAD-binding complement(193696..195099) Methylococcus capsulatus str. Bath 3103667 YP_112720.2 CDS gmhA NC_002977.6 195116 195703 R identified by similarity to SP:P51001; match to protein family HMM PF01380; match to protein family HMM TIGR00441; phosphoheptose isomerase complement(195116..195703) Methylococcus capsulatus str. Bath 3102806 YP_112721.1 CDS MCA0184 NC_002977.6 195700 196071 R identified by similarity to GP:17430288; match to protein family HMM PF02021; match to protein family HMM TIGR00252; hypothetical protein complement(195700..196071) Methylococcus capsulatus str. Bath 3104347 YP_112722.1 CDS MCA0185 NC_002977.6 196071 197948 R identified by similarity to OMNI:NTL03PA04424; match to protein family HMM PF04348; lipoprotein complement(196071..197948) Methylococcus capsulatus str. Bath 3103974 YP_112723.1 CDS MCA0186 NC_002977.6 197976 198851 D identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; hypothetical protein 197976..198851 Methylococcus capsulatus str. Bath 3104548 YP_112724.1 CDS MCA0187 NC_002977.6 198875 199819 D identified by similarity to OMNI:NTL01SM00894; match to protein family HMM PF01522; hypothetical protein 198875..199819 Methylococcus capsulatus str. Bath 3102877 YP_112725.1 CDS MCA0188 NC_002977.6 199830 200285 R identified by similarity to OMNI:NTL01EC04037; hypothetical protein complement(199830..200285) Methylococcus capsulatus str. Bath 3102428 YP_112726.1 CDS MCA0189 NC_002977.6 201156 201560 D hypothetical protein 201156..201560 Methylococcus capsulatus str. Bath 3102734 YP_112727.1 CDS MCA0190 NC_002977.6 201762 201935 R hypothetical protein complement(201762..201935) Methylococcus capsulatus str. Bath 3102619 YP_112728.1 CDS MCA0192 NC_002977.6 203115 203288 D hypothetical protein 203115..203288 Methylococcus capsulatus str. Bath 3102091 YP_112729.1 CDS MCA0193 NC_002977.6 203337 203693 R hypothetical protein complement(203337..203693) Methylococcus capsulatus str. Bath 3103153 YP_112730.1 CDS MCA0194 NC_002977.6 203782 203961 R hypothetical protein complement(203782..203961) Methylococcus capsulatus str. Bath 3102790 YP_112731.1 CDS MCA0195 NC_002977.6 203966 205396 R identified by similarity to GP:18893765; match to protein family HMM PF01139; hypothetical protein complement(203966..205396) Methylococcus capsulatus str. Bath 3104824 YP_112732.1 CDS MCA0196 NC_002977.6 205411 205842 R identified by similarity to GP:18893692; match to protein family HMM PF01951; hypothetical protein complement(205411..205842) Methylococcus capsulatus str. Bath 3102499 YP_112733.1 CDS MCA0197 NC_002977.6 205955 206404 D identified by similarity to OMNI:NTL02SS0707; match to protein family HMM PF01864; hypothetical protein 205955..206404 Methylococcus capsulatus str. Bath 3102955 YP_112734.1 CDS MCA0198 NC_002977.6 206364 207377 R identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase complement(206364..207377) Methylococcus capsulatus str. Bath 3104997 YP_112735.1 CDS MCA0199 NC_002977.6 207374 207688 R hypothetical protein complement(207374..207688) Methylococcus capsulatus str. Bath 3102587 YP_112736.1 CDS MCA0200 NC_002977.6 207834 208223 D identified by similarity to GP:15020688; hypothetical protein 207834..208223 Methylococcus capsulatus str. Bath 3102524 YP_112737.1 CDS MCA0201 NC_002977.6 208220 208843 D HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 208220..208843 Methylococcus capsulatus str. Bath 3103074 YP_112738.1 CDS MCA0202 NC_002977.6 208872 209183 R identified by similarity to OMNI:NTL02ML3042; match to protein family HMM PF05169; match to protein family HMM TIGR02174; hypothetical protein complement(208872..209183) Methylococcus capsulatus str. Bath 3104708 YP_112739.1 CDS MCA0203 NC_002977.6 209180 209413 R identified by similarity to SP:P20190; hypothetical protein complement(209180..209413) Methylococcus capsulatus str. Bath 3102962 YP_112740.1 CDS MCA0204 NC_002977.6 209618 211186 D identified by similarity to SP:P27714; match to protein family HMM PF02579; match to protein family HMM PF04055; match to protein family HMM TIGR01290; nitrogenase cofactor biosynthesis protein NifB 209618..211186 Methylococcus capsulatus str. Bath 3103905 YP_112741.1 CDS MCA0205 NC_002977.6 211303 211527 D identified by similarity to GP:1518927; match to protein family HMM PF00037; ferredoxin, 4Fe-4S 211303..211527 Methylococcus capsulatus str. Bath 3103964 YP_112742.1 CDS MCA0206 NC_002977.6 211539 211922 D identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; HesB/YadR/YfhF family protein 211539..211922 Methylococcus capsulatus str. Bath 3104865 YP_112743.1 CDS MCA0207 NC_002977.6 211941 212474 D identified by similarity to GP:142364; hypothetical protein 211941..212474 Methylococcus capsulatus str. Bath 3103900 YP_112744.1 CDS MCA0208 NC_002977.6 212455 213246 D identified by match to protein family HMM PF01816; hypothetical protein 212455..213246 Methylococcus capsulatus str. Bath 3102282 YP_112745.1 CDS MCA0209 NC_002977.6 213268 213588 D identified by similarity to SP:P08533; match to protein family HMM PF04319; nifZ protein 213268..213588 Methylococcus capsulatus str. Bath 3103988 YP_112746.1 CDS MCA0210 NC_002977.6 213585 213854 D nifZ protein 213585..213854 Methylococcus capsulatus str. Bath 3104700 YP_112747.1 CDS MCA0211 NC_002977.6 213900 214244 D identified by similarity to GP:12620472; hypothetical protein 213900..214244 Methylococcus capsulatus str. Bath 3103111 YP_112748.1 CDS nifS NC_002977.6 214241 215389 D identified by similarity to SP:Q43884; match to protein family HMM PF00266; cysteine desulfurase 214241..215389 Methylococcus capsulatus str. Bath 3103373 YP_112749.1 CDS MCA0213 NC_002977.6 215448 215666 D identified by similarity to OMNI:NTL02ML4553; match to protein family HMM PF06988; hypothetical protein 215448..215666 Methylococcus capsulatus str. Bath 3104823 YP_112750.1 CDS MCA0214 NC_002977.6 215669 215947 D identified by similarity to GP:551688; hypothetical protein 215669..215947 Methylococcus capsulatus str. Bath 3104667 YP_112751.1 CDS MCA0215 NC_002977.6 215944 217098 D identified by match to protein family HMM PF01041; aminotransferase 215944..217098 Methylococcus capsulatus str. Bath 3104105 YP_112752.1 CDS MCA0216 NC_002977.6 217110 217451 D identified by similarity to SP:P25528; match to protein family HMM PF00111; (2Fe-2S) ferredoxin 217110..217451 Methylococcus capsulatus str. Bath 3104967 YP_112753.1 CDS MCA0217 NC_002977.6 217457 217687 D hypothetical protein 217457..217687 Methylococcus capsulatus str. Bath 3104963 YP_112754.1 CDS MCA0218 NC_002977.6 217693 218535 D identified by similarity to GP:7407093; hypothetical protein 217693..218535 Methylococcus capsulatus str. Bath 3103412 YP_112755.1 CDS MCA0219 NC_002977.6 218574 219392 R identified by similarity to OMNI:NTL01XF02028; match to protein family HMM PF03692; hypothetical protein complement(218574..219392) Methylococcus capsulatus str. Bath 3103383 YP_112756.1 CDS MCA0220 NC_002977.6 219564 219779 D identified by similarity to OMNI:NTL01ATC0362; hypothetical protein 219564..219779 Methylococcus capsulatus str. Bath 3103416 YP_112757.1 CDS MCA0221 NC_002977.6 219939 220514 D identified by similarity to GP:17135185; hypothetical protein 219939..220514 Methylococcus capsulatus str. Bath 3104706 YP_112758.1 CDS MCA0222 NC_002977.6 220563 222152 R identified by similarity to GP:2983454; hypothetical protein complement(220563..222152) Methylococcus capsulatus str. Bath 3102725 YP_112759.1 CDS MCA0223 NC_002977.6 222149 222586 R identified by similarity to GP:862325; match to protein family HMM PF03960; match to protein family HMM TIGR01616; nitrogenase-associated protein complement(222149..222586) Methylococcus capsulatus str. Bath 3104712 YP_112760.1 CDS MCA0224 NC_002977.6 222594 222845 R hypothetical protein complement(222594..222845) Methylococcus capsulatus str. Bath 3102521 YP_112761.1 CDS MCA0225 NC_002977.6 222898 223224 R identified by similarity to GP:1754625; match to protein family HMM PF00355; Rieske 2Fe-2S family protein complement(222898..223224) Methylococcus capsulatus str. Bath 3102639 YP_112762.1 CDS MCA0227 NC_002977.6 223963 225063 D identified by match to protein family HMM PF01609; ISMca1, transposase 223963..225063 Methylococcus capsulatus str. Bath 3102644 YP_112763.1 CDS MCA0228 NC_002977.6 225302 225727 R identified by match to protein family HMM PF00072; response regulator complement(225302..225727) Methylococcus capsulatus str. Bath 3103256 YP_112764.1 CDS nifH NC_002977.6 226242 227123 D nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; in R. etli there are three essentially identical copies of nifH which are actively expressed during symbiosis; nitrogenase reductase 226242..227123 Methylococcus capsulatus str. Bath 3102678 YP_112765.1 CDS nifD NC_002977.6 227222 228682 D identified by similarity to SP:P06120; match to protein family HMM PF00148; match to protein family HMM TIGR01282; match to protein family HMM TIGR01862; nitrogenase molybdenum-iron protein subunit alpha 227222..228682 Methylococcus capsulatus str. Bath 3102880 YP_112766.1 CDS nifK NC_002977.6 228789 230348 D identified by similarity to SP:P20621; match to protein family HMM PF00148; match to protein family HMM TIGR01286; nitrogenase molybdenum-iron protein subunit beta 228789..230348 Methylococcus capsulatus str. Bath 3103105 YP_112767.1 CDS MCA0232 NC_002977.6 230591 230959 D identified by similarity to SP:P37097; match to protein family HMM PF00111; (2Fe-2S) ferredoxin 230591..230959 Methylococcus capsulatus str. Bath 3102290 YP_112768.1 CDS nifE NC_002977.6 231399 233081 D identified by similarity to SP:P26506; match to protein family HMM PF00148; match to protein family HMM PF04324; match to protein family HMM TIGR01283; nitrogenase iron-molybdenum cofactor biosynthesis protein nifE 231399..233081 Methylococcus capsulatus str. Bath 3102543 YP_112769.1 CDS nifN NC_002977.6 233089 234462 D identified by similarity to SP:P26507; match to protein family HMM PF00148; match to protein family HMM TIGR01285; nitrogenase molybdenum-iron cofactor biosynthesis protein NifN 233089..234462 Methylococcus capsulatus str. Bath 3102301 YP_112770.1 CDS MCA0235 NC_002977.6 234506 234931 D identified by similarity to SP:P19078; match to protein family HMM PF02579; nitrogenase molybdenum-iron protein NifX 234506..234931 Methylococcus capsulatus str. Bath 3103770 YP_112771.1 CDS MCA0236 NC_002977.6 234945 235403 D identified by similarity to GP:12620458; match to protein family HMM PF03270; hypothetical protein 234945..235403 Methylococcus capsulatus str. Bath 3103702 YP_112772.1 CDS MCA0237 NC_002977.6 235418 235609 D identified by similarity to SP:Q44148; match to protein family HMM PF05082; hypothetical protein 235418..235609 Methylococcus capsulatus str. Bath 3102060 YP_112773.1 CDS MCA0238 NC_002977.6 235620 235928 D identified by similarity to SP:P46036; match to protein family HMM PF00037; ferredoxin, 4Fe-4S 235620..235928 Methylococcus capsulatus str. Bath 3104033 YP_112774.1 CDS MCA0239 NC_002977.6 235978 236571 D identified by similarity to SP:P11068; match to protein family HMM PF04891; nitrogen fixation protein nifQ 235978..236571 Methylococcus capsulatus str. Bath 3103048 YP_112775.1 CDS MCA0240 NC_002977.6 236550 237620 D identified by similarity to OMNI:NTL03PA00760; match to protein family HMM PF01571; hypothetical protein 236550..237620 Methylococcus capsulatus str. Bath 3103767 YP_112776.1 CDS apaG NC_002977.6 237673 238053 D protein associated with Co2+ and Mg2+ efflux; ApaG protein 237673..238053 Methylococcus capsulatus str. Bath 3104089 YP_112777.1 CDS clpP NC_002977.6 238108 238728 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 238108..238728 Methylococcus capsulatus str. Bath 3103291 YP_112778.1 CDS clpX NC_002977.6 238818 240086 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 238818..240086 Methylococcus capsulatus str. Bath 3104969 YP_112779.1 CDS MCA0245 NC_002977.6 240724 240927 D hypothetical protein 240724..240927 Methylococcus capsulatus str. Bath 3102431 YP_112780.1 CDS MCA0246 NC_002977.6 240908 241558 D identified by similarity to GP:17135818; match to protein family HMM PF05063; adenine-specific DNA methyltransferase 240908..241558 Methylococcus capsulatus str. Bath 3104881 YP_112781.1 CDS iscS NC_002977.6 241910 243121 D identified by similarity to SP:P39171; match to protein family HMM PF00266; match to protein family HMM TIGR02006; cysteine desulfurase 241910..243121 Methylococcus capsulatus str. Bath 3103376 YP_112782.1 CDS MCA0248 NC_002977.6 243163 243582 D identified by similarity to SP:P77310; match to protein family HMM PF01592; match to protein family HMM TIGR01999; scaffold protein 243163..243582 Methylococcus capsulatus str. Bath 3102882 YP_112783.1 CDS MCA0249 NC_002977.6 243608 243994 D identified by similarity to GP:17427504; match to protein family HMM PF01521; match to protein family HMM TIGR00049; HesB/YadR/YfhF family protein 243608..243994 Methylococcus capsulatus str. Bath 3102505 YP_112784.1 CDS MCA0250 NC_002977.6 244021 244344 D identified by similarity to GP:2271523; match to protein family HMM PF01521; match to protein family HMM TIGR00049; match to protein family HMM TIGR02011; HesB/YadR/YfhF family protein 244021..244344 Methylococcus capsulatus str. Bath 3102615 YP_112785.1 CDS hscB NC_002977.6 244356 244889 D J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 244356..244889 Methylococcus capsulatus str. Bath 3102129 YP_112786.1 CDS hscA NC_002977.6 244889 246748 D involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 244889..246748 Methylococcus capsulatus str. Bath 3104595 YP_112787.1 CDS MCA0253 NC_002977.6 246751 247089 D identified by similarity to SP:P25528; match to protein family HMM PF00111; match to protein family HMM TIGR02007; (2Fe-2S) ferredoxin 246751..247089 Methylococcus capsulatus str. Bath 3103244 YP_112788.1 CDS nifV NC_002977.6 247098 248252 D identified by similarity to SP:P05342; match to protein family HMM PF00682; homocitrate synthase 247098..248252 Methylococcus capsulatus str. Bath 3103603 YP_112789.1 CDS MCA0255 NC_002977.6 248299 248637 D identified by similarity to SP:P26481; match to protein family HMM PF03206; nitrogen fixation protein NifW 248299..248637 Methylococcus capsulatus str. Bath 3102092 YP_112790.1 CDS MCA0256 NC_002977.6 248741 249067 D identified by similarity to SP:O66511; (2Fe-2S) ferredoxin 248741..249067 Methylococcus capsulatus str. Bath 3103236 YP_112791.1 CDS MCA0257 NC_002977.6 249081 249569 D identified by similarity to GP:17131609; hypothetical protein 249081..249569 Methylococcus capsulatus str. Bath 3102822 YP_112792.1 CDS MCA0258 NC_002977.6 249610 249933 D identified by similarity to SP:P25528; match to protein family HMM PF00111; (2Fe-2S) ferredoxin 249610..249933 Methylococcus capsulatus str. Bath 3102098 YP_112793.1 CDS MCA0259 NC_002977.6 250085 250417 D identified by similarity to GP:19880969; match to protein family HMM TIGR00365; glutaredoxin-like protein 250085..250417 Methylococcus capsulatus str. Bath 3102374 YP_112794.1 CDS MCA0260 NC_002977.6 250423 250671 D identified by match to protein family HMM PF01722; toluene-tolerance protein 250423..250671 Methylococcus capsulatus str. Bath 3103580 YP_112795.1 CDS MCA0261 NC_002977.6 250692 250925 D identified by similarity to OMNI:TM1186; hypothetical protein 250692..250925 Methylococcus capsulatus str. Bath 3102591 YP_112796.1 CDS MCA0262 NC_002977.6 250992 252668 D identified by match to protein family HMM PF00004; ATPase AAA 250992..252668 Methylococcus capsulatus str. Bath 3103097 YP_112797.1 CDS MCA0263 NC_002977.6 252934 253611 D identified by similarity to OMNI:NTL01BM1881; match to protein family HMM PF01557; fumarylacetoacetate hydrolase 252934..253611 Methylococcus capsulatus str. Bath 3102592 YP_112798.1 CDS MCA0264 NC_002977.6 253623 253862 D hypothetical protein 253623..253862 Methylococcus capsulatus str. Bath 3103706 YP_112799.1 CDS MCA0265 NC_002977.6 253921 254304 R hypothetical protein complement(253921..254304) Methylococcus capsulatus str. Bath 3102326 YP_112800.1 CDS MCA0266 NC_002977.6 254445 254816 D hypothetical protein 254445..254816 Methylococcus capsulatus str. Bath 3102729 YP_112801.1 CDS MCA0267 NC_002977.6 254833 254997 D hypothetical protein 254833..254997 Methylococcus capsulatus str. Bath 3103316 YP_112802.1 CDS amt-1 NC_002977.6 255158 256453 D identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter 255158..256453 Methylococcus capsulatus str. Bath 3104399 YP_112803.1 CDS MCA0269 NC_002977.6 256499 256948 R identified by similarity to OMNI:NTL02SA0423; hypothetical protein complement(256499..256948) Methylococcus capsulatus str. Bath 3102292 YP_112804.1 CDS MCA0270 NC_002977.6 256945 257352 R identified by similarity to SP:P43933; match to protein family HMM PF01909; nucleotidyltransferase domain-containing protein complement(256945..257352) Methylococcus capsulatus str. Bath 3102718 YP_112805.1 CDS MCA0271 NC_002977.6 257349 257768 R identified by match to protein family HMM TIGR01987; hypothetical protein complement(257349..257768) Methylococcus capsulatus str. Bath 3104405 YP_112806.1 CDS MCA0272 NC_002977.6 257817 258197 R type I restriction endonuclease S subunit complement(257817..258197) Methylococcus capsulatus str. Bath 3105088 YP_112807.1 CDS MCA0273 NC_002977.6 258264 258413 R hypothetical protein complement(258264..258413) Methylococcus capsulatus str. Bath 3102059 YP_112808.1 CDS MCA0274 NC_002977.6 258432 261440 R identified by similarity to OMNI:NTL01XF02722; match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851; type I restriction-modification system, R subunit complement(258432..261440) Methylococcus capsulatus str. Bath 3102312 YP_112809.1 CDS MCA0275 NC_002977.6 261427 262587 R identified by match to protein family HMM PF01381; DNA-binding protein complement(261427..262587) Methylococcus capsulatus str. Bath 3103170 YP_112810.1 CDS MCA0276 NC_002977.6 262580 262909 R identified by similarity to GP:4098979; killer suppression protein HigA complement(262580..262909) Methylococcus capsulatus str. Bath 3104779 YP_112811.1 CDS MCA0277 NC_002977.6 263017 264441 R identified by similarity to GP:9187842; hypothetical protein complement(263017..264441) Methylococcus capsulatus str. Bath 3103246 YP_112812.1 CDS MCA0278 NC_002977.6 264441 266813 R identified by similarity to OMNI:NTL03PA02735; match to protein family HMM PF02384; match to protein family HMM PF02506; type I restriction-modification system, M subunit complement(264441..266813) Methylococcus capsulatus str. Bath 3103008 YP_112813.1 CDS MCA0279 NC_002977.6 266810 267079 R identified by similarity to GP:2764916; match to protein family HMM TIGR01764; DNA binding domain-containing protein complement(266810..267079) Methylococcus capsulatus str. Bath 3104422 YP_112814.1 CDS MCA0280 NC_002977.6 267166 267378 D hypothetical protein 267166..267378 Methylococcus capsulatus str. Bath 3104065 YP_112815.1 CDS MCA0281 NC_002977.6 267415 268290 R identified by match to protein family HMM PF00665; ISMca2, transposase, OrfB complement(267415..268290) Methylococcus capsulatus str. Bath 3103752 YP_112816.1 CDS MCA0282 NC_002977.6 268287 268649 R identified by match to protein family HMM PF01527; ISMca2, transposase, OrfA complement(268287..268649) Methylococcus capsulatus str. Bath 3103504 YP_112817.1 CDS MCA0283 NC_002977.6 268869 269183 R identified by match to protein family HMM PF00543; nitrogen regulatory protein P-II complement(268869..269183) Methylococcus capsulatus str. Bath 3102832 YP_112818.1 CDS MCA0284 NC_002977.6 269243 270799 R identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; outer membrane efflux family protein complement(269243..270799) Methylococcus capsulatus str. Bath 3104886 YP_112819.1 CDS MCA0285 NC_002977.6 270838 273285 R PBS lyase complement(270838..273285) Methylococcus capsulatus str. Bath 3104762 YP_112820.1 CDS MCA0286 NC_002977.6 273318 277352 R hypothetical protein complement(273318..277352) Methylococcus capsulatus str. Bath 3102833 YP_112821.1 CDS MCA0287 NC_002977.6 277683 278945 R identified by similarity to SP:P13034; match to protein family HMM PF00037; ferredoxin, 4Fe-4S complement(277683..278945) Methylococcus capsulatus str. Bath 3103180 YP_112822.1 CDS MCA0288 NC_002977.6 279607 280839 D identified by match to protein family HMM PF01464; transglycosylase 279607..280839 Methylococcus capsulatus str. Bath 3102124 YP_112823.1 CDS yfhC NC_002977.6 280836 281249 R identified by match to protein family HMM PF00383; zinc-binding domain-containing protein complement(280836..281249) Methylococcus capsulatus str. Bath 3104826 YP_112824.1 CDS guaA NC_002977.6 281291 282865 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(281291..282865) Methylococcus capsulatus str. Bath 3102555 YP_112825.1 CDS guaB NC_002977.6 282887 284350 R identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302; inosine-5'-monophosphate dehydrogenase complement(282887..284350) Methylococcus capsulatus str. Bath 3102931 YP_112826.1 CDS MCA0292 NC_002977.6 284463 285371 R identified by similarity to OMNI:NTL02ML5888; hypothetical protein complement(284463..285371) Methylococcus capsulatus str. Bath 3104221 YP_112827.1 CDS MCA0293 NC_002977.6 285423 287555 R identified by similarity to OMNI:NTL03PA04929; match to protein family HMM PF04055; hypothetical protein complement(285423..287555) Methylococcus capsulatus str. Bath 3102123 YP_112828.1 CDS MCA0294 NC_002977.6 287634 288080 R hypothetical protein complement(287634..288080) Methylococcus capsulatus str. Bath 3102354 YP_112829.1 CDS pmoC3 NC_002977.6 288174 288935 R identified by similarity to GP:14456716; match to protein family HMM PF04896; methane monooxygenase subunit C complement(288174..288935) Methylococcus capsulatus str. Bath 3102361 YP_112830.1 CDS glgX NC_002977.6 289074 291248 D identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100; glycogen debranching protein GlgX 289074..291248 Methylococcus capsulatus str. Bath 3102055 YP_112831.1 CDS MCA0297 NC_002977.6 291249 292061 R identified by similarity to OMNI:NTL01SMB00167; hypothetical protein complement(291249..292061) Methylococcus capsulatus str. Bath 3103956 YP_112832.1 CDS MCA0298 NC_002977.6 292103 293152 R identified by similarity to OMNI:NTL01SMB00168; match to protein family HMM PF00753; metallo-beta-lactamase complement(292103..293152) Methylococcus capsulatus str. Bath 3103774 YP_112833.1 CDS MCA0299 NC_002977.6 293402 295261 D identified by similarity to SP:P15279; match to protein family HMM PF01011; methanol dehydrogenase, large subunit 293402..295261 Methylococcus capsulatus str. Bath 3103066 YP_112834.1 CDS MCA0300 NC_002977.6 295433 296287 D identified by similarity to GP:1657793; MxaJ protein 295433..296287 Methylococcus capsulatus str. Bath 3102377 YP_112835.1 CDS lysS NC_002977.6 296343 297833 R identified by similarity to SP:P14825; match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499; lysyl-tRNA synthetase complement(296343..297833) Methylococcus capsulatus str. Bath 3103134 YP_112836.1 CDS prfB NC_002977.6 297838 298936 R identified by similarity to SP:P07012; match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020; peptide chain release factor 2, programmed frameshift complement(join(297838..298860,298862..298936)) Methylococcus capsulatus str. Bath 3103292 YP_112837.1 CDS MCA0303 NC_002977.6 299025 299537 R identified by match to protein family HMM PF05229; lipoprotein complement(299025..299537) Methylococcus capsulatus str. Bath 3104011 YP_112838.1 CDS MCA0304 NC_002977.6 299534 301900 R identified by similarity to SP:P30130; match to protein family HMM PF00577; fimbrial biogenesis protein complement(299534..301900) Methylococcus capsulatus str. Bath 3102841 YP_112839.1 CDS MCA0305 NC_002977.6 301941 302672 R identified by similarity to SP:P53520; chaperone protein pmfD complement(301941..302672) Methylococcus capsulatus str. Bath 3102918 YP_112840.1 CDS MCA0306 NC_002977.6 302701 303246 R identified by similarity to SP:P27755; match to protein family HMM PF05229; spore coat protein, late developmental complement(302701..303246) Methylococcus capsulatus str. Bath 3102342 YP_112841.1 CDS MCA0307 NC_002977.6 303488 304588 D identified by match to protein family HMM PF01609; ISMca1, transposase 303488..304588 Methylococcus capsulatus str. Bath 3102105 YP_112842.1 CDS MCA0309 NC_002977.6 305275 305991 D identified by similarity to GP:9950618; match to protein family HMM PF01243; hypothetical protein 305275..305991 Methylococcus capsulatus str. Bath 3103815 YP_112843.1 CDS MCA0310 NC_002977.6 305998 306705 R identified by similarity to OMNI:NTL01AT1832; hypothetical protein complement(305998..306705) Methylococcus capsulatus str. Bath 3103825 YP_112844.1 CDS MCA0311 NC_002977.6 306856 307128 R identified by similarity to OMNI:NTL03PA05109; lipoprotein complement(306856..307128) Methylococcus capsulatus str. Bath 3103826 YP_112845.1 CDS MCA0312 NC_002977.6 307286 307984 D identified by similarity to OMNI:NTL03PA04496; match to protein family HMM PF04402; hypothetical protein 307286..307984 Methylococcus capsulatus str. Bath 3104063 YP_112846.1 CDS MCA0313 NC_002977.6 308027 309016 D identified by similarity to SP:P25662; match to protein family HMM PF01145; match to protein family HMM TIGR01933; hflK protein 308027..309016 Methylococcus capsulatus str. Bath 3104002 YP_112847.1 CDS MCA0314 NC_002977.6 309013 309975 D identified by similarity to SP:P25661; match to protein family HMM PF01145; match to protein family HMM TIGR01932; hflC protein 309013..309975 Methylococcus capsulatus str. Bath 3104240 YP_112848.1 CDS MCA0315 NC_002977.6 310065 310457 R hypothetical protein complement(310065..310457) Methylococcus capsulatus str. Bath 3104062 YP_112849.1 CDS MCA0316 NC_002977.6 310664 311194 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 310664..311194 Methylococcus capsulatus str. Bath 3103358 YP_112850.1 CDS MCA0317 NC_002977.6 311255 312634 D selenium-binding protein 311255..312634 Methylococcus capsulatus str. Bath 3103385 YP_112851.1 CDS MCA0318 NC_002977.6 312660 314540 D identified by similarity to SP:Q49128; match to protein family HMM PF03150; SCO1/SenC family protein/methylamine utilization protein MauG 312660..314540 Methylococcus capsulatus str. Bath 3102742 YP_112852.1 CDS MCA0320 NC_002977.6 314929 316158 R identified by similarity to SP:P36670; match to protein family HMM PF07690; AmpG protein complement(314929..316158) Methylococcus capsulatus str. Bath 3103666 YP_112853.1 CDS xth-1 NC_002977.6 316142 316915 R identified by similarity to SP:P37454; match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III complement(316142..316915) Methylococcus capsulatus str. Bath 3102777 YP_112854.1 CDS rpmE NC_002977.6 317030 317233 D identified by similarity to SP:P02432; match to protein family HMM PF01197; match to protein family HMM TIGR00105; 50S ribosomal protein L31 317030..317233 Methylococcus capsulatus str. Bath 3102778 YP_112855.1 CDS MCA0323 NC_002977.6 317269 317880 R identified by similarity to GP:17429805; hypothetical protein complement(317269..317880) Methylococcus capsulatus str. Bath 3102779 YP_112856.1 CDS mrcA NC_002977.6 317896 320388 R identified by similarity to SP:P02918; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; penicillin-binding protein 1A complement(317896..320388) Methylococcus capsulatus str. Bath 3102782 YP_112857.1 CDS pilM NC_002977.6 320584 321726 D identified by similarity to OMNI:NTL03PA05045; match to protein family HMM TIGR01175; type 4 fimbrial biogenesis protein PilM 320584..321726 Methylococcus capsulatus str. Bath 3102784 YP_112858.1 CDS pilN NC_002977.6 321696 322331 D identified by similarity to OMNI:NTL03PA05044; match to protein family HMM PF05137; type 4 fimbrial biogenesis protein PilN 321696..322331 Methylococcus capsulatus str. Bath 3102805 YP_112859.1 CDS pilO NC_002977.6 322328 322966 D identified by similarity to OMNI:NTL03PA05043; match to protein family HMM PF04350; type 4 fimbrial biogenesis protein PilO 322328..322966 Methylococcus capsulatus str. Bath 3102112 YP_112860.1 CDS pilP NC_002977.6 322966 323508 D identified by similarity to OMNI:NTL03PA05042; match to protein family HMM PF04351; type 4 fimbrial biogenesis protein PilP 322966..323508 Methylococcus capsulatus str. Bath 3102551 YP_112861.1 CDS pilQ NC_002977.6 323495 325684 D identified by similarity to SP:P34750; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; fimbrial assembly protein PilQ 323495..325684 Methylococcus capsulatus str. Bath 3102362 YP_112862.1 CDS aroK NC_002977.6 325746 326285 D identified by similarity to SP:P24167; match to protein family HMM PF01202; shikimate kinase 325746..326285 Methylococcus capsulatus str. Bath 3102291 YP_112863.1 CDS aroB NC_002977.6 326282 327361 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 326282..327361 Methylococcus capsulatus str. Bath 3102062 YP_112864.1 CDS hemE NC_002977.6 327389 328441 D identified by match to protein family HMM PF01208; match to protein family HMM TIGR01464; uroporphyrinogen decarboxylase 327389..328441 Methylococcus capsulatus str. Bath 3102300 YP_112865.1 CDS MCA0333 NC_002977.6 328446 329015 D identified by similarity to OMNI:MT1739; match to protein family HMM PF00293; MutT/nudix family protein 328446..329015 Methylococcus capsulatus str. Bath 3102310 YP_112866.1 CDS MCA0334 NC_002977.6 328991 329356 R identified by similarity to GP:14026911; match to protein family HMM PF04343; hypothetical protein complement(328991..329356) Methylococcus capsulatus str. Bath 3102316 YP_112867.1 CDS MCA0335 NC_002977.6 329353 333048 R identified by similarity to GP:15619037; hypothetical protein complement(329353..333048) Methylococcus capsulatus str. Bath 3102367 YP_112868.1 CDS MCA0336 NC_002977.6 333232 333573 D hypothetical protein 333232..333573 Methylococcus capsulatus str. Bath 3102339 YP_112869.1 CDS MCA0337 NC_002977.6 333864 335336 D identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate phosphodiesterase 333864..335336 Methylococcus capsulatus str. Bath 3102149 YP_112870.1 CDS MCA0338 NC_002977.6 335452 338361 R identified by similarity to GP:4325062; cytochrome c5530 family protein complement(335452..338361) Methylococcus capsulatus str. Bath 3104752 YP_112871.1 CDS MCA0339 NC_002977.6 338735 340015 D identified by similarity to GP:17428048; match to protein family HMM PF02646; hypothetical protein 338735..340015 Methylococcus capsulatus str. Bath 3104742 YP_112872.1 CDS MCA0340 NC_002977.6 340020 341930 R identified by similarity to GP:17133197; hypothetical protein complement(340020..341930) Methylococcus capsulatus str. Bath 3102661 YP_112873.1 CDS MCA0341 NC_002977.6 341996 342505 D hypothetical protein 341996..342505 Methylococcus capsulatus str. Bath 3105065 YP_112874.1 CDS MCA0342 NC_002977.6 342615 344225 D identified by match to protein family HMM PF00488; MutS family DNA mismatch repair protein 342615..344225 Methylococcus capsulatus str. Bath 3104004 YP_112875.1 CDS MCA0343 NC_002977.6 344225 344995 D identified by similarity to SP:P05446; match to protein family HMM PF00753; metallo-beta-lactamase 344225..344995 Methylococcus capsulatus str. Bath 3102760 YP_112876.1 CDS MCA0344 NC_002977.6 344992 346389 R identified by match to protein family HMM PF00324; amino acid permease complement(344992..346389) Methylococcus capsulatus str. Bath 3102749 YP_112877.1 CDS MCA0345 NC_002977.6 346923 347954 D identified by similarity to SP:P14532; match to protein family HMM PF03150; cytochrome c peroxidase 346923..347954 Methylococcus capsulatus str. Bath 3103999 YP_112878.1 CDS MCA0346 NC_002977.6 347951 349270 R hypothetical protein complement(347951..349270) Methylococcus capsulatus str. Bath 3102176 YP_112879.1 CDS MCA0347 NC_002977.6 349596 350375 R hypothetical protein complement(349596..350375) Methylococcus capsulatus str. Bath 3103036 YP_112880.1 CDS MCA0348 NC_002977.6 350468 351934 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 complement(350468..351934) Methylococcus capsulatus str. Bath 3102432 YP_112881.1 CDS MCA0349 NC_002977.6 351928 353289 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 complement(351928..353289) Methylococcus capsulatus str. Bath 3105095 YP_112882.1 CDS gcvT NC_002977.6 353383 354465 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(353383..354465) Methylococcus capsulatus str. Bath 3105022 YP_112883.1 CDS MCA0351 NC_002977.6 354603 354929 D identified by match to protein family HMM PF02627; carboxymuconolactone decarboxylase domain-containing protein 354603..354929 Methylococcus capsulatus str. Bath 3104581 YP_112884.1 CDS MCA0352 NC_002977.6 354999 355358 D identified by similarity to OMNI:AF0187; match to protein family HMM PF02635; hypothetical protein 354999..355358 Methylococcus capsulatus str. Bath 3104906 YP_112885.1 CDS MCA0353 NC_002977.6 355418 355876 D identified by similarity to OMNI:DR0566; match to protein family HMM PF04543; hypothetical protein 355418..355876 Methylococcus capsulatus str. Bath 3103249 YP_112886.1 CDS ilvA NC_002977.6 355962 357491 R threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase complement(355962..357491) Methylococcus capsulatus str. Bath 3104026 YP_112887.1 CDS rpiA NC_002977.6 357582 358238 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 357582..358238 Methylococcus capsulatus str. Bath 3103694 YP_112888.1 CDS MCA0356 NC_002977.6 358368 358925 R lipoprotein complement(358368..358925) Methylococcus capsulatus str. Bath 3105060 YP_112889.1 CDS MCA0357 NC_002977.6 359089 359472 R identified by similarity to OMNI:NTL03PA00341; hypothetical protein complement(359089..359472) Methylococcus capsulatus str. Bath 3104950 YP_112890.1 CDS tag NC_002977.6 359519 360094 R identified by similarity to SP:P05100; match to protein family HMM PF03352; DNA-3-methyladenine glycosylase I complement(359519..360094) Methylococcus capsulatus str. Bath 3103393 YP_112891.1 CDS MCA0359 NC_002977.6 360091 360924 R identified by match to protein family HMM PF02231; phosphotransferase domain-containing protein complement(360091..360924) Methylococcus capsulatus str. Bath 3104707 YP_112892.1 CDS MCA0360 NC_002977.6 360930 361481 R identified by similarity to OMNI:NTL03PA03755; match to protein family HMM PF00293; MutT/nudix family protein complement(360930..361481) Methylococcus capsulatus str. Bath 3104751 YP_112893.1 CDS purD NC_002977.6 361715 362998 D identified by match to protein family HMM PF01071; match to protein family HMM PF02842; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877; phosphoribosylamine--glycine ligase 361715..362998 Methylococcus capsulatus str. Bath 3102772 YP_112894.1 CDS pqiB NC_002977.6 364331 366049 D identified by similarity to SP:P43671; paraquat-inducible protein B 364331..366049 Methylococcus capsulatus str. Bath 3103372 YP_112895.1 CDS MCA0364 NC_002977.6 366046 366651 D identified by similarity to OMNI:NTL03PA04964; match to protein family HMM PF03886; lipoprotein 366046..366651 Methylococcus capsulatus str. Bath 3103141 YP_112896.1 CDS MCA0365 NC_002977.6 366700 368109 R identified by similarity to GP:15808730; hypothetical protein complement(366700..368109) Methylococcus capsulatus str. Bath 3104229 YP_112897.1 CDS MCA0366 NC_002977.6 368221 369297 R hypothetical protein complement(368221..369297) Methylococcus capsulatus str. Bath 3104684 YP_112898.1 CDS MCA0367 NC_002977.6 369651 372014 R identified by match to protein family HMM PF02012; BNR repeat-containing protein complement(369651..372014) Methylococcus capsulatus str. Bath 3102769 YP_112899.1 CDS MCA0368 NC_002977.6 372168 373259 D identified by match to protein family HMM PF00246; zinc-binding domain-containing protein 372168..373259 Methylococcus capsulatus str. Bath 3104697 YP_112900.1 CDS MCA0369 NC_002977.6 373252 374043 D identified by match to protein family HMM PF00561; alpha/beta hydrolase 373252..374043 Methylococcus capsulatus str. Bath 3103915 YP_112901.1 CDS MCA0370 NC_002977.6 374530 375375 R identified by match to protein family HMM PF00165; AraC family transcriptional regulator complement(374530..375375) Methylococcus capsulatus str. Bath 3104003 YP_112902.1 CDS MCA0371 NC_002977.6 375497 375859 D hypothetical protein 375497..375859 Methylococcus capsulatus str. Bath 3102498 YP_112903.1 CDS MCA0372 NC_002977.6 375826 376386 R identified by similarity to GP:14027356; match to protein family HMM PF01066; CDP-alcohol phosphatidyltransferase complement(375826..376386) Methylococcus capsulatus str. Bath 3103924 YP_112904.1 CDS purM NC_002977.6 376570 377607 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 376570..377607 Methylococcus capsulatus str. Bath 3102463 YP_112905.1 CDS MCA0374 NC_002977.6 377637 378368 D identified by similarity to OMNI:CC0469; match to protein family HMM PF00535; glycosyl transferase group 2 family protein 377637..378368 Methylococcus capsulatus str. Bath 3102269 YP_112906.1 CDS MCA0375 NC_002977.6 378381 378755 D hypothetical protein 378381..378755 Methylococcus capsulatus str. Bath 3102231 YP_112907.1 CDS nadA NC_002977.6 378759 379928 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 378759..379928 Methylococcus capsulatus str. Bath 3102279 YP_112908.1 CDS MCA0377 NC_002977.6 379938 380405 D SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 379938..380405 Methylococcus capsulatus str. Bath 3103864 YP_112909.1 CDS maf-1 NC_002977.6 380410 381018 D identified by similarity to SP:Q02169; match to protein family HMM PF02545; match to protein family HMM TIGR00172; maf protein 380410..381018 Methylococcus capsulatus str. Bath 3103726 YP_112910.1 CDS cafA NC_002977.6 381015 382469 D identified by similarity to SP:P25537; match to protein family HMM PF00575; match to protein family HMM TIGR00757; ribonuclease G 381015..382469 Methylococcus capsulatus str. Bath 3103406 YP_112911.1 CDS MCA0380 NC_002977.6 382586 386383 D identified by similarity to OMNI:NTL02EC4081; match to protein family HMM TIGR02099; hypothetical protein 382586..386383 Methylococcus capsulatus str. Bath 3102107 YP_112912.1 CDS MCA0381 NC_002977.6 386432 387253 D identified by similarity to OMNI:NTL01NM01917; match to protein family HMM PF00795; carbon-nitrogen family hydrolase 386432..387253 Methylococcus capsulatus str. Bath 3104439 YP_112913.1 CDS tldD NC_002977.6 387283 388728 D identified by similarity to SP:P46473; match to protein family HMM PF01523; tldD protein 387283..388728 Methylococcus capsulatus str. Bath 3102246 YP_112914.1 CDS pmbA NC_002977.6 388721 390055 D identified by similarity to SP:P24231; match to protein family HMM PF01523; pmbA protein 388721..390055 Methylococcus capsulatus str. Bath 3104599 YP_112915.1 CDS MCA0384 NC_002977.6 390121 390441 R hypothetical protein complement(390121..390441) Methylococcus capsulatus str. Bath 3105096 YP_112916.1 CDS MCA0385 NC_002977.6 390880 391359 D identified by similarity to SP:P41053; match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence/damage inducible protein CinA 390880..391359 Methylococcus capsulatus str. Bath 3102315 YP_112917.1 CDS MCA0386 NC_002977.6 391340 391912 D identified by similarity to SP:P37025; match to protein family HMM PF02834; match to protein family HMM TIGR02258; 2'-5' RNA ligase 391340..391912 Methylococcus capsulatus str. Bath 3103217 YP_112918.1 CDS recA NC_002977.6 391945 392988 D identified by similarity to SP:P18076; match to protein family HMM PF00154; match to protein family HMM TIGR02012; recombinase A 391945..392988 Methylococcus capsulatus str. Bath 3104748 YP_112919.1 CDS recX NC_002977.6 393039 393455 D identified by similarity to SP:P37861; match to protein family HMM PF02631; recX protein 393039..393455 Methylococcus capsulatus str. Bath 3103994 YP_112920.1 CDS alaS NC_002977.6 393475 396078 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 393475..396078 Methylococcus capsulatus str. Bath 3103898 YP_112921.1 CDS MCA0390 NC_002977.6 396113 397342 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 396113..397342 Methylococcus capsulatus str. Bath 3103629 YP_112922.1 CDS MCA0391 NC_002977.6 397493 397687 D identified by similarity to SP:P31803; match to protein family HMM PF02599; match to protein family HMM TIGR00202; carbon storage regulator 397493..397687 Methylococcus capsulatus str. Bath 3103288 YP_112923.1 CDS rpsP NC_002977.6 397949 398203 D identified by similarity to SP:P02372; match to protein family HMM PF00886; match to protein family HMM TIGR00002; 30S ribosomal protein S16 397949..398203 Methylococcus capsulatus str. Bath 3103114 YP_112924.1 CDS rimM NC_002977.6 398203 398721 D identified by similarity to SP:P21504; match to protein family HMM PF01782; match to protein family HMM PF05239; match to protein family HMM TIGR02273; 16S rRNA-processing protein RimM 398203..398721 Methylococcus capsulatus str. Bath 3102757 YP_112925.1 CDS trmD NC_002977.6 398738 399493 D identified by similarity to SP:P07020; match to protein family HMM PF01746; match to protein family HMM TIGR00088; tRNA (guanine-N1)-methyltransferase 398738..399493 Methylococcus capsulatus str. Bath 3102854 YP_112926.1 CDS rplS NC_002977.6 399498 399842 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 399498..399842 Methylococcus capsulatus str. Bath 3102493 YP_112927.1 CDS xerD NC_002977.6 399926 400855 D identified by similarity to SP:P21891; match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225; tyrosine recombinase XerD 399926..400855 Methylococcus capsulatus str. Bath 3103749 YP_112928.1 CDS lpxA-1 NC_002977.6 400872 401654 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 400872..401654 Methylococcus capsulatus str. Bath 3103753 YP_112929.1 CDS MCA0398 NC_002977.6 401680 402639 D identified by similarity to GP:1001423; match to protein family HMM PF01408; match to protein family HMM PF02894; Gfo/Idh/MocA family oxidoreductase 401680..402639 Methylococcus capsulatus str. Bath 3103851 YP_112930.1 CDS MCA0399 NC_002977.6 402636 403730 D identified by match to protein family HMM PF01041; aminotransferase 402636..403730 Methylococcus capsulatus str. Bath 3103537 YP_112931.1 CDS lpxB NC_002977.6 403723 404877 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 403723..404877 Methylococcus capsulatus str. Bath 3102993 YP_112932.1 CDS MCA0401 NC_002977.6 404950 405450 D identified by similarity to OMNI:CC2202; match to protein family HMM PF01272; transcription elongation factor 404950..405450 Methylococcus capsulatus str. Bath 3102750 YP_112933.1 CDS MCA0402 NC_002977.6 405463 406200 D identified by similarity to OMNI:DR2490; match to protein family HMM PF01863; hypothetical protein 405463..406200 Methylococcus capsulatus str. Bath 3102916 YP_112934.1 CDS MCA0403 NC_002977.6 406200 406688 D identified by similarity to GP:2327006; suppressor for copper-sensitivity D 406200..406688 Methylococcus capsulatus str. Bath 3103745 YP_112935.1 CDS MCA0404 NC_002977.6 407104 407259 D type I restriction-modification system M subunit 407104..407259 Methylococcus capsulatus str. Bath 3103689 YP_112936.1 CDS MCA0405 NC_002977.6 407486 408094 D identified by similarity to OMNI:NTL01SMA00006; hypothetical protein 407486..408094 Methylococcus capsulatus str. Bath 3102964 YP_112937.1 CDS MCA0406 NC_002977.6 408679 409215 D lipoprotein 408679..409215 Methylococcus capsulatus str. Bath 3104360 YP_112938.1 CDS MCA0407 NC_002977.6 409353 409721 D hypothetical protein 409353..409721 Methylococcus capsulatus str. Bath 3103929 YP_112939.1 CDS MCA0408 NC_002977.6 409964 410731 D identified by similarity to OMNI:NTL01SS00205; hypothetical protein 409964..410731 Methylococcus capsulatus str. Bath 3103832 YP_112940.1 CDS MCA0409 NC_002977.6 410752 411822 D lipoprotein 410752..411822 Methylococcus capsulatus str. Bath 3103807 YP_112941.1 CDS MCA0410 NC_002977.6 411815 412087 D hypothetical protein 411815..412087 Methylococcus capsulatus str. Bath 3103809 YP_112942.1 CDS MCA0411 NC_002977.6 412094 412390 D hypothetical protein 412094..412390 Methylococcus capsulatus str. Bath 3103407 YP_112943.1 CDS MCA0412 NC_002977.6 412474 413778 D identified by similarity to SP:P40680; match to protein family HMM PF01476; match to protein family HMM PF03734; LysM domain-containing protein 412474..413778 Methylococcus capsulatus str. Bath 3103394 YP_112944.1 CDS MCA0413 NC_002977.6 413786 414334 R identified by similarity to OMNI:NTL01SM00917; match to protein family HMM PF02622; hypothetical protein complement(413786..414334) Methylococcus capsulatus str. Bath 3103494 YP_112945.1 CDS MCA0414 NC_002977.6 414444 414761 R identified by similarity to SP:P45806; match to protein family HMM PF07119; hypothetical protein complement(414444..414761) Methylococcus capsulatus str. Bath 3103739 YP_112946.1 CDS MCA0415 NC_002977.6 414866 416083 R identified by similarity to OMNI:NTL03PA01484; hypothetical protein complement(414866..416083) Methylococcus capsulatus str. Bath 3103324 YP_112947.1 CDS ccmH NC_002977.6 416089 416550 R identified by similarity to SP:P33925; match to protein family HMM PF03918; cytochrome c-type biogenesis protein CcmH complement(416089..416550) Methylococcus capsulatus str. Bath 3103754 YP_112948.1 CDS dsbE-1 NC_002977.6 416547 417113 R identified by similarity to SP:P33926; match to protein family HMM TIGR00385; thiol:disulfide interchange protein DsbE complement(416547..417113) Methylococcus capsulatus str. Bath 3102825 YP_112949.1 CDS ccmF NC_002977.6 417110 419083 R identified by similarity to SP:P33927; match to protein family HMM PF01578; match to protein family HMM TIGR00353; cytochrome c-type biogenesis protein CcmF complement(417110..419083) Methylococcus capsulatus str. Bath 3102767 YP_112950.1 CDS ccmE NC_002977.6 419080 419541 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE complement(419080..419541) Methylococcus capsulatus str. Bath 3102808 YP_112951.1 CDS MCA0420 NC_002977.6 419538 419750 R identified by similarity to SP:P45035; match to protein family HMM PF04995; heme exporter protein CcmD complement(419538..419750) Methylococcus capsulatus str. Bath 3102809 YP_112952.1 CDS MCA0421 NC_002977.6 420130 423453 D cytochrome c5530 family protein 420130..423453 Methylococcus capsulatus str. Bath 3102814 YP_112953.1 CDS MCA0423 NC_002977.6 423936 427412 D identified by match to protein family HMM PF00801; cytochrome c5530 423936..427412 Methylococcus capsulatus str. Bath 3102871 YP_112954.1 CDS MCA0424 NC_002977.6 427847 430600 D identified by similarity to GP:4325063; cytochrome c family protein 427847..430600 Methylococcus capsulatus str. Bath 3102888 YP_112955.1 CDS MCA0425 NC_002977.6 430651 430956 D hypothetical protein 430651..430956 Methylococcus capsulatus str. Bath 3102909 YP_112956.1 CDS MCA0426 NC_002977.6 431006 433756 D cytochrome c family protein 431006..433756 Methylococcus capsulatus str. Bath 3102920 YP_112957.1 CDS MCA0427 NC_002977.6 433828 435240 D hypothetical protein 433828..435240 Methylococcus capsulatus str. Bath 3102465 YP_112958.1 CDS MCA0428 NC_002977.6 435387 435851 D hypothetical protein 435387..435851 Methylococcus capsulatus str. Bath 3102471 YP_112959.1 CDS MCA0429 NC_002977.6 436750 437817 R hypothetical protein complement(436750..437817) Methylococcus capsulatus str. Bath 3102319 YP_112960.1 CDS MCA0430 NC_002977.6 437933 438982 D identified by match to protein family HMM PF00037; 4Fe-4S ferredoxin 437933..438982 Methylococcus capsulatus str. Bath 3102322 YP_112961.1 CDS MCA0431 NC_002977.6 439302 441953 D identified by match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00667; match to protein family HMM TIGR01931; flavodoxin domain-containing protein 439302..441953 Methylococcus capsulatus str. Bath 3102324 YP_112962.1 CDS MCA0432 NC_002977.6 441981 442787 D lipoprotein 441981..442787 Methylococcus capsulatus str. Bath 3102332 YP_112963.1 CDS MCA0433 NC_002977.6 442795 445587 D identified by match to protein family HMM PF01436; match to protein family HMM TIGR01905; NHL domain/cytochrome c family protein 442795..445587 Methylococcus capsulatus str. Bath 3102335 YP_112964.1 CDS dsbE-2 NC_002977.6 445809 446354 D identified by similarity to SP:P33926; match to protein family HMM TIGR00385; thiol:disulfide interchange protein DsbE 445809..446354 Methylococcus capsulatus str. Bath 3102355 YP_112965.1 CDS MCA0435 NC_002977.6 446407 447078 D identified by similarity to OMNI:VC1548; hypothetical protein 446407..447078 Methylococcus capsulatus str. Bath 3102358 YP_112966.1 CDS MCA0436 NC_002977.6 447075 448286 D identified by match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein 447075..448286 Methylococcus capsulatus str. Bath 3102360 YP_112967.1 CDS exbB2 NC_002977.6 448294 448791 D identified by match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein 448294..448791 Methylococcus capsulatus str. Bath 3104778 YP_112968.1 CDS MCA0438 NC_002977.6 448809 449222 D identified by similarity to SP:Q05606; match to protein family HMM PF02472; biopolymer ExbD/TolR family transporter 448809..449222 Methylococcus capsulatus str. Bath 3104793 YP_112969.1 CDS MCA0439 NC_002977.6 449378 450025 D identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352; TonB domain-containing protein 449378..450025 Methylococcus capsulatus str. Bath 3104806 YP_112970.1 CDS MCA0440 NC_002977.6 450523 452850 D identified by similarity to OMNI:NTL03PA03268; match to protein family HMM PF00593; TonB-dependent receptor 450523..452850 Methylococcus capsulatus str. Bath 3104816 YP_112971.1 CDS MCA0441 NC_002977.6 452874 453620 D identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352; TonB domain-containing protein 452874..453620 Methylococcus capsulatus str. Bath 3104835 YP_112972.1 CDS MCA0442 NC_002977.6 453638 454294 D identified by similarity to OMNI:NTL03PA00199; match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein 453638..454294 Methylococcus capsulatus str. Bath 3104840 YP_112973.1 CDS MCA0443 NC_002977.6 454307 454717 D identified by similarity to SP:P05829; match to protein family HMM PF02472; biopolymer ExbD/TolR family transporter 454307..454717 Methylococcus capsulatus str. Bath 3104837 YP_112974.1 CDS MCA0444 NC_002977.6 454935 457010 R hypothetical protein complement(454935..457010) Methylococcus capsulatus str. Bath 3104938 YP_112975.1 CDS MCA0445 NC_002977.6 457009 458079 D hypothetical protein 457009..458079 Methylococcus capsulatus str. Bath 3105077 YP_112976.1 CDS MCA0446 NC_002977.6 458126 459169 D hypothetical protein 458126..459169 Methylococcus capsulatus str. Bath 3102178 YP_112977.1 CDS MCA0447 NC_002977.6 459204 460145 D identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent DNA-binding response regulator 459204..460145 Methylococcus capsulatus str. Bath 3105100 YP_112978.1 CDS MCA0448 NC_002977.6 460158 461900 R identified by similarity to OMNI:DR0505; match to protein family HMM PF00149; match to protein family HMM PF02872; 5'-nucleotidase complement(460158..461900) Methylococcus capsulatus str. Bath 3102370 YP_112979.1 CDS MCA0449 NC_002977.6 462237 465332 D identified by similarity to SP:P37278; match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation-transporting ATPase 462237..465332 Methylococcus capsulatus str. Bath 3102323 YP_112980.1 CDS metK-2 NC_002977.6 465329 466522 D methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 465329..466522 Methylococcus capsulatus str. Bath 3102308 YP_112981.1 CDS MCA0451 NC_002977.6 466525 468546 D identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525; heavy metal-transporting ATPase 466525..468546 Methylococcus capsulatus str. Bath 3103091 YP_112982.1 CDS MCA0452 NC_002977.6 468590 470059 D identified by match to protein family HMM PF00672; HAMP domain-containing protein 468590..470059 Methylococcus capsulatus str. Bath 3104666 YP_112983.1 CDS MCA0453 NC_002977.6 470120 470887 D identified by match to protein family HMM PF01656; ParA family protein 470120..470887 Methylococcus capsulatus str. Bath 3104673 YP_112984.1 CDS MCA0454 NC_002977.6 471257 471772 R hypothetical protein complement(471257..471772) Methylococcus capsulatus str. Bath 3102336 YP_112985.1 CDS MCA0455 NC_002977.6 472143 472586 D hypothetical protein 472143..472586 Methylococcus capsulatus str. Bath 3103492 YP_112986.1 CDS MCA0456 NC_002977.6 474069 475463 R identified by similarity to OMNI:VCA0960; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(474069..475463) Methylococcus capsulatus str. Bath 3104770 YP_112987.1 CDS MCA0457 NC_002977.6 475468 475872 R hypothetical protein complement(475468..475872) Methylococcus capsulatus str. Bath 3104774 YP_112988.1 CDS MCA0458 NC_002977.6 475925 476371 R hypothetical protein complement(475925..476371) Methylococcus capsulatus str. Bath 3104773 YP_112989.1 CDS MCA0459 NC_002977.6 476610 476897 D hypothetical protein 476610..476897 Methylococcus capsulatus str. Bath 3104946 YP_112990.1 CDS MCA0460 NC_002977.6 476927 477190 D identified by similarity to GP:1518927; match to protein family HMM PF00037; ferredoxin, 4Fe-4S 476927..477190 Methylococcus capsulatus str. Bath 3104960 YP_112991.1 CDS MCA0461 NC_002977.6 477279 479063 D identified by match to protein family HMM PF00563; match to protein family HMM PF00571; match to protein family HMM PF00990; match to protein family HMM TIGR00254; CBS/GGDEF/EAL domain-containing protein 477279..479063 Methylococcus capsulatus str. Bath 3104959 YP_112992.2 CDS cobU NC_002977.6 479244 479759 D catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase 479244..479759 Methylococcus capsulatus str. Bath 3104971 YP_112993.1 CDS cobT NC_002977.6 479756 480796 D catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 479756..480796 Methylococcus capsulatus str. Bath 3105004 YP_112994.1 CDS MCA0464 NC_002977.6 480793 481386 D identified by similarity to SP:P52086; match to protein family HMM PF00300; alpha-ribazole-5'-phosphate phosphatase 480793..481386 Methylococcus capsulatus str. Bath 3105021 YP_112995.1 CDS cobS NC_002977.6 481410 482102 D catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 481410..482102 Methylococcus capsulatus str. Bath 3105076 YP_112996.1 CDS MCA0466 NC_002977.6 481965 484082 R identified by match to protein family HMM PF01841; transglutaminase complement(481965..484082) Methylococcus capsulatus str. Bath 3103931 YP_112997.1 CDS MCA0467 NC_002977.6 484079 485044 R identified by similarity to OMNI:NTL03PA02874; match to protein family HMM PF01882; hypothetical protein complement(484079..485044) Methylococcus capsulatus str. Bath 3104668 YP_112998.1 CDS MCA0468 NC_002977.6 485058 485969 R identified by similarity to GP:18892502; moxR protein complement(485058..485969) Methylococcus capsulatus str. Bath 3102933 YP_112999.1 CDS MCA0469 NC_002977.6 486106 486630 R hypothetical protein complement(486106..486630) Methylococcus capsulatus str. Bath 3102952 YP_113000.1 CDS MCA0470 NC_002977.6 486838 487257 D hypothetical protein 486838..487257 Methylococcus capsulatus str. Bath 3102405 YP_113001.1 CDS MCA0471 NC_002977.6 487376 489127 D identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase 487376..489127 Methylococcus capsulatus str. Bath 3103361 YP_113002.1 CDS MCA0472 NC_002977.6 489129 491003 D identified by similarity to SP:P54420; match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; asparagine synthetase 489129..491003 Methylococcus capsulatus str. Bath 3103175 YP_113003.1 CDS MCA0474 NC_002977.6 491565 495974 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614; ATP-dependent DNA helicase UvrD complement(491565..495974) Methylococcus capsulatus str. Bath 3105098 YP_113004.1 CDS MCA0476 NC_002977.6 496823 497605 R identified by similarity to OMNI:VCA0776; match to protein family HMM PF03746; LamB/YcsF family protein complement(496823..497605) Methylococcus capsulatus str. Bath 3105097 YP_113005.1 CDS MCA0477 NC_002977.6 497614 498606 R identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724; allophanate hydrolase subunit 2 complement(497614..498606) Methylococcus capsulatus str. Bath 3103574 YP_113006.1 CDS MCA0478 NC_002977.6 498603 499292 R identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370; allophanate hydrolase subunit 1 complement(498603..499292) Methylococcus capsulatus str. Bath 3104469 YP_113007.1 CDS MCA0482 NC_002977.6 501566 502495 D hypothetical protein 501566..502495 Methylococcus capsulatus str. Bath 3103941 YP_113008.1 CDS MCA0484 NC_002977.6 504135 504551 D identified by similarity to GP:27348307; hypothetical protein 504135..504551 Methylococcus capsulatus str. Bath 3102449 YP_113009.1 CDS MCA0485 NC_002977.6 504872 505723 R identified by match to protein family HMM PF00248; aldo/keto reductase complement(504872..505723) Methylococcus capsulatus str. Bath 3102400 YP_113010.1 CDS MCA0486 NC_002977.6 505734 506360 R identified by similarity to OMNI:PSPTO5190; hypothetical protein complement(505734..506360) Methylococcus capsulatus str. Bath 3102399 YP_113011.1 CDS MCA0487 NC_002977.6 506592 506759 R hypothetical protein complement(506592..506759) Methylococcus capsulatus str. Bath 3102388 YP_113012.1 CDS MCA0488 NC_002977.6 506842 507156 D hypothetical protein 506842..507156 Methylococcus capsulatus str. Bath 3102387 YP_113013.1 CDS MCA0489 NC_002977.6 507177 507500 R hypothetical protein complement(507177..507500) Methylococcus capsulatus str. Bath 3102386 YP_113014.1 CDS amt-2 NC_002977.6 507520 508815 R identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter complement(507520..508815) Methylococcus capsulatus str. Bath 3104534 YP_113015.1 CDS MCA0491 NC_002977.6 509163 510329 D identified by similarity to GP:4378852; hypothetical protein 509163..510329 Methylococcus capsulatus str. Bath 3102376 YP_113016.1 CDS MCA0492 NC_002977.6 510348 510626 D identified by similarity to SP:Q47142; hypothetical protein 510348..510626 Methylococcus capsulatus str. Bath 3102375 YP_113017.1 CDS MCA0496 NC_002977.6 512192 513094 R identified by similarity to OMNI:NTL03PA04657; match to protein family HMM TIGR01777; hypothetical protein complement(512192..513094) Methylococcus capsulatus str. Bath 3102150 YP_113018.1 CDS phhB NC_002977.6 513153 513497 R identified by similarity to SP:P43335; match to protein family HMM PF01329; pterin-4-alpha-carbinolamine dehydratase complement(513153..513497) Methylococcus capsulatus str. Bath 3102138 YP_113019.1 CDS MCA0498 NC_002977.6 513623 514303 R identified by similarity to OMNI:NTL01SMA00697; match to protein family HMM PF07298; hypothetical protein complement(513623..514303) Methylococcus capsulatus str. Bath 3102137 YP_113020.1 CDS MCA0499 NC_002977.6 514456 514827 R identified by similarity to OMNI:NTL03PA04177; match to protein family HMM PF04828; hypothetical protein complement(514456..514827) Methylococcus capsulatus str. Bath 3102118 YP_113021.1 CDS MCA0500 NC_002977.6 514805 514972 R hypothetical protein complement(514805..514972) Methylococcus capsulatus str. Bath 3103310 YP_113022.1 CDS MCA0503 NC_002977.6 515916 516851 D identified by similarity to OMNI:NTL03PA00821; match to protein family HMM PF01844; hypothetical protein 515916..516851 Methylococcus capsulatus str. Bath 3103309 YP_113023.1 CDS MCA0504 NC_002977.6 517168 518325 D identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 517168..518325 Methylococcus capsulatus str. Bath 3102094 YP_113024.1 CDS MCA0505 NC_002977.6 518680 518922 R hypothetical protein complement(518680..518922) Methylococcus capsulatus str. Bath 3102086 YP_113025.1 CDS MCA0506 NC_002977.6 518981 519721 D hypothetical protein 518981..519721 Methylococcus capsulatus str. Bath 3102085 YP_113026.1 CDS fchA NC_002977.6 520441 521064 R identified by similarity to SP:Q49135; match to protein family HMM PF04961; methenyltetrahydrofolate cyclohydrolase complement(520441..521064) Methylococcus capsulatus str. Bath 3105041 YP_113027.1 CDS MCA0508 NC_002977.6 521192 522052 D identified by similarity to SP:P55818; methylenetetrahydromethanopterin dehydrogenase/methylenetetrahydrofolate dehydrogenase 521192..522052 Methylococcus capsulatus str. Bath 3102829 YP_113028.1 CDS cysS NC_002977.6 522065 523462 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(522065..523462) Methylococcus capsulatus str. Bath 3103874 YP_113029.1 CDS gltX-1 NC_002977.6 523464 524864 R identified by similarity to SP:P22250; match to protein family HMM PF00749; match to protein family HMM TIGR00464; glutamyl-tRNA synthetase complement(523464..524864) Methylococcus capsulatus str. Bath 3103869 YP_113030.1 CDS MCA0511 NC_002977.6 525098 526564 D identified by similarity to SP:P50974; match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH ubiquinone/plastoquinone complex subunit 525098..526564 Methylococcus capsulatus str. Bath 3102467 YP_113031.1 CDS MCA0512 NC_002977.6 526638 529859 D identified by similarity to OMNI:NTL01AA00598; hypothetical protein 526638..529859 Methylococcus capsulatus str. Bath 3104705 YP_113032.1 CDS MCA0513 NC_002977.6 529905 531434 D identified by similarity to GP:17221967; match to protein family HMM PF00361; match to protein family HMM PF00662; NADH ubiquinone/plastoquinone complex subunit 529905..531434 Methylococcus capsulatus str. Bath 3104704 YP_113033.1 CDS MCA0514 NC_002977.6 531445 532995 D identified by similarity to SP:P31978; match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH ubiquinone/plastoquinone complex subunit 531445..532995 Methylococcus capsulatus str. Bath 3102476 YP_113034.1 CDS MCA0515 NC_002977.6 533015 534550 D identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH ubiquinone/plastoquinone complex subunit 533015..534550 Methylococcus capsulatus str. Bath 3103817 YP_113035.1 CDS ppiB NC_002977.6 534781 535278 D identified by similarity to SP:P23869; match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase B 534781..535278 Methylococcus capsulatus str. Bath 3103820 YP_113036.1 CDS dksA NC_002977.6 535433 535864 D identified by similarity to SP:P18274; match to protein family HMM PF01258; DnaK suppressor protein 535433..535864 Methylococcus capsulatus str. Bath 3104653 YP_113037.1 CDS MCA0518 NC_002977.6 535883 536791 D identified by similarity to SP:P96551; match to protein family HMM PF00749; glutamyl-tRNA synthetase 535883..536791 Methylococcus capsulatus str. Bath 3103792 YP_113038.1 CDS MCA0519 NC_002977.6 536810 537250 R identified by similarity to GP:1001228; match to protein family HMM PF00293; MutT/nudix family protein complement(536810..537250) Methylococcus capsulatus str. Bath 3103242 YP_113039.1 CDS MCA0520 NC_002977.6 537327 538037 D hypothetical protein 537327..538037 Methylococcus capsulatus str. Bath 3104722 YP_113040.1 CDS MCA0521 NC_002977.6 538037 538480 D identified by similarity to OMNI:NTL01ST1808; match to protein family HMM PF05779; hypothetical protein 538037..538480 Methylococcus capsulatus str. Bath 3103746 YP_113041.1 CDS MCA0522 NC_002977.6 538507 538968 D hypothetical protein 538507..538968 Methylococcus capsulatus str. Bath 3104339 YP_113042.1 CDS MCA0523 NC_002977.6 538995 539465 D identified by similarity to SP:P45523; match to protein family HMM PF00254; FKBP-type peptidyl-prolyl cis-trans isomerase 538995..539465 Methylococcus capsulatus str. Bath 3104962 YP_113043.1 CDS MCA0524 NC_002977.6 539526 540011 R identified by similarity to GP:3659895; cytochrome P460 complement(539526..540011) Methylococcus capsulatus str. Bath 3104961 YP_113044.1 CDS MCA0525 NC_002977.6 540057 540458 R hypothetical protein complement(540057..540458) Methylococcus capsulatus str. Bath 3103686 YP_113045.1 CDS MCA0526 NC_002977.6 540474 541184 R identified by similarity to OMNI:NTL02SC1751; match to protein family HMM PF00596; hypothetical protein complement(540474..541184) Methylococcus capsulatus str. Bath 3103392 YP_113046.1 CDS MCA0527 NC_002977.6 541133 542104 R identified by match to protein family HMM PF02517; hypothetical protein complement(541133..542104) Methylococcus capsulatus str. Bath 3103377 YP_113047.1 CDS tig NC_002977.6 542565 543680 D identified by match to protein family HMM PF00254; match to protein family HMM PF05698; trigger factor 542565..543680 Methylococcus capsulatus str. Bath 3103583 YP_113048.2 CDS clpP NC_002977.6 543746 544333 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 543746..544333 Methylococcus capsulatus str. Bath 3103556 YP_113049.1 CDS clpX NC_002977.6 544429 545715 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 544429..545715 Methylococcus capsulatus str. Bath 3103528 YP_113050.1 CDS lon NC_002977.6 545845 548274 D identified by similarity to SP:P08177; match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763; ATP-dependent protease La 545845..548274 Methylococcus capsulatus str. Bath 3103750 YP_113051.1 CDS hupB NC_002977.6 548430 548702 D identified by similarity to SP:P02341; match to protein family HMM PF00216; DNA-binding protein HU-beta 548430..548702 Methylococcus capsulatus str. Bath 3103464 YP_113052.1 CDS ppiD NC_002977.6 549020 550837 D identified by similarity to SP:P77241; match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerse D 549020..550837 Methylococcus capsulatus str. Bath 3103590 YP_113053.1 CDS MCA0534 NC_002977.6 550891 552033 D hypothetical protein 550891..552033 Methylococcus capsulatus str. Bath 3103353 YP_113054.1 CDS MCA0535 NC_002977.6 552042 552539 R hypothetical protein complement(552042..552539) Methylococcus capsulatus str. Bath 3103340 YP_113055.1 CDS MCA0536 NC_002977.6 552555 552887 D hypothetical protein 552555..552887 Methylococcus capsulatus str. Bath 3103334 YP_113056.1 CDS MCA0537 NC_002977.6 552891 553790 R identified by match to protein family HMM PF03193; match to protein family HMM TIGR00157; hypothetical protein complement(552891..553790) Methylococcus capsulatus str. Bath 3103330 YP_113057.1 CDS MCA0538 NC_002977.6 553808 555169 R identified by match to protein family HMM PF01435; M48 family peptidase complement(553808..555169) Methylococcus capsulatus str. Bath 3103325 YP_113058.1 CDS orn NC_002977.6 555152 555697 D 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 555152..555697 Methylococcus capsulatus str. Bath 3103318 YP_113059.1 CDS MCA0540 NC_002977.6 555703 556644 D identified by similarity to OMNI:CC1055; hypothetical protein 555703..556644 Methylococcus capsulatus str. Bath 3103317 YP_113060.1 CDS MCA0541 NC_002977.6 556567 557613 R identified by match to protein family HMM PF00534; glycosyl transferase family protein complement(556567..557613) Methylococcus capsulatus str. Bath 3102735 YP_113061.1 CDS MCA0542 NC_002977.6 557693 559513 R identified by similarity to SP:P54420; match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; asparagine synthetase complement(557693..559513) Methylococcus capsulatus str. Bath 3103300 YP_113062.1 CDS MCA0543 NC_002977.6 559512 560024 D hypothetical protein 559512..560024 Methylococcus capsulatus str. Bath 3103295 YP_113063.1 CDS fusA-1 NC_002977.6 560144 562228 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(560144..562228) Methylococcus capsulatus str. Bath 3104601 YP_113064.1 CDS MCA0545 NC_002977.6 562384 563520 R identified by similarity to SP:P31801; match to protein family HMM PF01699; calcium/proton transporter complement(562384..563520) Methylococcus capsulatus str. Bath 3103281 YP_113065.1 CDS MCA0546 NC_002977.6 563632 564648 D hypothetical protein 563632..564648 Methylococcus capsulatus str. Bath 3103276 YP_113066.1 CDS MCA0547 NC_002977.6 564816 568460 D identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein 564816..568460 Methylococcus capsulatus str. Bath 3102783 YP_113067.1 CDS MCA0548 NC_002977.6 568423 569019 R identified by similarity to GP:9950157; match to protein family HMM PF00849; match to protein family HMM TIGR00093; RNA pseudouridine synthase complement(568423..569019) Methylococcus capsulatus str. Bath 3102811 YP_113068.1 CDS MCA0549 NC_002977.6 569026 569874 D identified by similarity to SP:P33635; match to protein family HMM PF00588; RNA methyltransferase 569026..569874 Methylococcus capsulatus str. Bath 3103250 YP_113069.1 CDS MCA0550 NC_002977.6 570770 574348 D identified by match to protein family HMM PF01555; match to protein family HMM PF04480; DNA methyltransferase 570770..574348 Methylococcus capsulatus str. Bath 3102810 YP_113070.1 CDS MCA0551 NC_002977.6 574465 577134 D identified by similarity to OMNI:NTL01TV1471; match to protein family HMM PF04851; hypothetical protein 574465..577134 Methylococcus capsulatus str. Bath 3104664 YP_113071.1 CDS MCA0552 NC_002977.6 577187 579481 R hypothetical protein complement(577187..579481) Methylococcus capsulatus str. Bath 3103417 YP_113072.1 CDS MCA0553 NC_002977.6 579565 582750 D identified by similarity to GP:9107638; match to protein family HMM PF00754; discoidin domain-containing protein 579565..582750 Methylococcus capsulatus str. Bath 3103098 YP_113073.1 CDS MCA0554 NC_002977.6 582796 583761 D identified by similarity to OMNI:NTL03PA05233; match to protein family HMM PF00529; HlyD family secretion protein 582796..583761 Methylococcus capsulatus str. Bath 3103095 YP_113074.1 CDS MCA0555 NC_002977.6 583758 586481 D identified by similarity to OMNI:NTL03PA05232; match to protein family HMM PF00005; match to protein family HMM PF01061; ABC transporter ATP-binding protein/permease 583758..586481 Methylococcus capsulatus str. Bath 3103075 YP_113075.1 CDS MCA0556 NC_002977.6 586447 586905 R hypothetical protein complement(586447..586905) Methylococcus capsulatus str. Bath 3104686 YP_113076.1 CDS MCA0557 NC_002977.6 586959 588098 D identified by similarity to SP:P31993; match to protein family HMM PF01061; hypothetical protein 586959..588098 Methylococcus capsulatus str. Bath 3103044 YP_113077.1 CDS MCA0558 NC_002977.6 588136 588552 D identified by similarity to OMNI:NTL01AT2375; hypothetical protein 588136..588552 Methylococcus capsulatus str. Bath 3104307 YP_113078.1 CDS MCA0559 NC_002977.6 589375 589794 D identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein 589375..589794 Methylococcus capsulatus str. Bath 3104306 YP_113079.1 CDS MCA0560 NC_002977.6 589821 590273 D identified by similarity to OMNI:NTL03PA04715; match to protein family HMM PF04214; hypothetical protein 589821..590273 Methylococcus capsulatus str. Bath 3103011 YP_113080.1 CDS glk NC_002977.6 590296 591288 D identified by similarity to SP:P46880; match to protein family HMM PF00480; match to protein family HMM PF02685; match to protein family HMM TIGR00749; glucokinase 590296..591288 Methylococcus capsulatus str. Bath 3102998 YP_113081.1 CDS MCA0562 NC_002977.6 591414 591845 D identified by similarity to OMNI:NTL01SMB01173; hypothetical protein 591414..591845 Methylococcus capsulatus str. Bath 3103961 YP_113082.1 CDS ald NC_002977.6 591842 592942 D identified by similarity to SP:P17556; match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518; alanine dehydrogenase 591842..592942 Methylococcus capsulatus str. Bath 3102986 YP_113083.1 CDS MCA0564 NC_002977.6 592951 593268 R hypothetical protein complement(592951..593268) Methylococcus capsulatus str. Bath 3102976 YP_113084.1 CDS glnD NC_002977.6 593310 595943 R identified by similarity to SP:P36223; match to protein family HMM PF01842; match to protein family HMM PF01909; match to protein family HMM PF01966; match to protein family HMM TIGR01693; protein-P-II uridylyltransferase complement(593310..595943) Methylococcus capsulatus str. Bath 3103204 YP_113085.1 CDS map NC_002977.6 595921 596706 R identified by similarity to SP:P07906; match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase complement(595921..596706) Methylococcus capsulatus str. Bath 3102940 YP_113086.1 CDS rpsB NC_002977.6 596940 597710 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 596940..597710 Methylococcus capsulatus str. Bath 3102474 YP_113087.1 CDS tsf NC_002977.6 597803 598684 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 597803..598684 Methylococcus capsulatus str. Bath 3102938 YP_113088.1 CDS pyrH NC_002977.6 598774 599493 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 598774..599493 Methylococcus capsulatus str. Bath 3104672 YP_113089.1 CDS frr NC_002977.6 599501 600058 D identified by similarity to SP:P16174; match to protein family HMM PF01765; match to protein family HMM TIGR00496; ribosome recycling factor 599501..600058 Methylococcus capsulatus str. Bath 3102468 YP_113090.1 CDS uppS NC_002977.6 600072 600860 D identified by similarity to SP:Q47675; match to protein family HMM PF01255; match to protein family HMM TIGR00055; undecaprenyl diphosphate synthase 600072..600860 Methylococcus capsulatus str. Bath 3102469 YP_113091.1 CDS cdsA NC_002977.6 600906 601892 D identified by similarity to SP:P06466; match to protein family HMM PF01148; phosphatidate cytidylyltransferase 600906..601892 Methylococcus capsulatus str. Bath 3102906 YP_113092.1 CDS dxr NC_002977.6 601925 603109 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 601925..603109 Methylococcus capsulatus str. Bath 3104583 YP_113093.1 CDS MCA0574 NC_002977.6 603214 604467 D identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054; membrane-associated zinc metalloprotease 603214..604467 Methylococcus capsulatus str. Bath 3103499 YP_113094.1 CDS dsbC NC_002977.6 604619 605251 D identified by similarity to SP:P21892; thiol:disulfide interchange protein DsbC 604619..605251 Methylococcus capsulatus str. Bath 3102167 YP_113095.1 CDS mutS NC_002977.6 605298 607862 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(605298..607862) Methylococcus capsulatus str. Bath 3102732 YP_113096.1 CDS MCA0577 NC_002977.6 607997 608374 D identified by similarity to OMNI:MT3577; match to protein family HMM PF00190; hypothetical protein 607997..608374 Methylococcus capsulatus str. Bath 3103148 YP_113097.1 CDS MCA0580 NC_002977.6 609385 609819 R identified by similarity to OMNI:NTL01SS01176; match to protein family HMM PF01724; hypothetical protein complement(609385..609819) Methylococcus capsulatus str. Bath 3102441 YP_113098.1 CDS MCA0581 NC_002977.6 609816 610124 R site-specific recombinase phage integrase complement(609816..610124) Methylococcus capsulatus str. Bath 3102626 YP_113099.1 CDS MCA0583 NC_002977.6 610687 611139 D identified by match to protein family HMM PF00571; hypothetical protein 610687..611139 Methylococcus capsulatus str. Bath 3103691 YP_113100.1 CDS ogt NC_002977.6 611168 611728 D identified by similarity to SP:P09168; match to protein family HMM PF01035; match to protein family HMM TIGR00589; methylated-DNA--protein-cysteine methyltransferase 611168..611728 Methylococcus capsulatus str. Bath 3102325 YP_113101.1 CDS MCA0585 NC_002977.6 612033 613547 D identified by similarity to GP:17428765; match to protein family HMM PF02696; hypothetical protein 612033..613547 Methylococcus capsulatus str. Bath 3103101 YP_113102.1 CDS MCA0586 NC_002977.6 613633 613947 D identified by similarity to GP:1754625; match to protein family HMM PF00355; Rieske 2Fe-2S family protein 613633..613947 Methylococcus capsulatus str. Bath 3102484 YP_113103.1 CDS MCA0587 NC_002977.6 614137 615693 R hypothetical protein complement(614137..615693) Methylococcus capsulatus str. Bath 3105040 YP_113104.1 CDS nasT NC_002977.6 616500 617075 R identified by similarity to GP:619066; match to protein family HMM PF00072; match to protein family HMM PF03861; response regulator NasT complement(616500..617075) Methylococcus capsulatus str. Bath 3103386 YP_113105.1 CDS MCA0589 NC_002977.6 617072 618370 R identified by similarity to SP:P38043; nitrate transporter complement(617072..618370) Methylococcus capsulatus str. Bath 3102183 YP_113106.1 CDS nasA NC_002977.6 618410 621049 R identified by similarity to SP:Q06457; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04324; match to protein family HMM PF04879; nitrate reductase complement(618410..621049) Methylococcus capsulatus str. Bath 3102182 YP_113107.1 CDS nirD NC_002977.6 621051 621407 R identified by similarity to SP:P42436; match to protein family HMM PF00355; nitrite reductase [NAD(P)H], small subunit complement(621051..621407) Methylococcus capsulatus str. Bath 3104943 YP_113108.1 CDS nirB NC_002977.6 621391 623853 R identified by similarity to SP:P42435; match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; nitrite reductase [NAD(P)H], large subunit complement(621391..623853) Methylococcus capsulatus str. Bath 3103163 YP_113109.1 CDS MCA0593 NC_002977.6 623850 625637 R identified by similarity to GP:4557191; match to protein family HMM PF00069; match to protein family HMM PF00481; protein phosphatase/kinase complement(623850..625637) Methylococcus capsulatus str. Bath 3104747 YP_113110.1 CDS MCA0594 NC_002977.6 625663 626937 R identified by similarity to SP:P46907; match to protein family HMM PF07690; nitrate transporter complement(625663..626937) Methylococcus capsulatus str. Bath 3104750 YP_113111.1 CDS MCA0595 NC_002977.6 627295 627783 D hypothetical protein 627295..627783 Methylococcus capsulatus str. Bath 3104749 YP_113112.1 CDS thrC NC_002977.6 627857 628999 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(627857..628999) Methylococcus capsulatus str. Bath 3104659 YP_113113.1 CDS hom NC_002977.6 629070 630380 R catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase complement(629070..630380) Methylococcus capsulatus str. Bath 3104735 YP_113114.2 CDS MCA0598 NC_002977.6 630415 631599 R identified by similarity to SP:P77434; match to protein family HMM PF00155; aminotransferase complement(630415..631599) Methylococcus capsulatus str. Bath 3104734 YP_113115.1 CDS MCA0599 NC_002977.6 631703 632401 R identified by similarity to GP:4545244; match to protein family HMM PF00483; nucleotidyltransferase complement(631703..632401) Methylococcus capsulatus str. Bath 3104682 YP_113116.1 CDS MCA0600 NC_002977.6 632398 633423 R identified by similarity to GP:4545243; hypothetical protein complement(632398..633423) Methylococcus capsulatus str. Bath 3102982 YP_113117.1 CDS MCA0601 NC_002977.6 633482 636757 D identified by similarity to OMNI:PSPTO0554; match to protein family HMM PF04453; organic solvent tolerance protein 633482..636757 Methylococcus capsulatus str. Bath 3104216 YP_113118.1 CDS surA NC_002977.6 636744 638108 D identified by similarity to SP:P21202; match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase SurA 636744..638108 Methylococcus capsulatus str. Bath 3102703 YP_113119.1 CDS pdxA NC_002977.6 638122 639114 D identified by similarity to SP:P19624; match to protein family HMM PF04166; match to protein family HMM TIGR00557; pyridoxal phosphate biosynthetic protein PdxA 638122..639114 Methylococcus capsulatus str. Bath 3103080 YP_113120.1 CDS ksgA NC_002977.6 639111 639884 D identified by match to protein family HMM PF00398; match to protein family HMM TIGR00755; dimethyladenosine transferase 639111..639884 Methylococcus capsulatus str. Bath 3103079 YP_113121.1 CDS MCA0605 NC_002977.6 639987 640307 R identified by similarity to SP:P02937; lipoprotein complement(639987..640307) Methylococcus capsulatus str. Bath 3104081 YP_113122.1 CDS MCA0606 NC_002977.6 640405 640938 R identified by similarity to OMNI:NTL03PA03756; match to protein family HMM PF03734; hypothetical protein complement(640405..640938) Methylococcus capsulatus str. Bath 3104071 YP_113123.1 CDS pgm NC_002977.6 641107 642741 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 641107..642741 Methylococcus capsulatus str. Bath 3104070 YP_113124.1 CDS MCA0608 NC_002977.6 642970 643443 R identified by similarity to OMNI:NTL01SS02055; hypothetical protein complement(642970..643443) Methylococcus capsulatus str. Bath 3103798 YP_113125.1 CDS MCA0609 NC_002977.6 643518 645416 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 643518..645416 Methylococcus capsulatus str. Bath 3103780 YP_113126.1 CDS mdh NC_002977.6 645424 646401 R catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase complement(645424..646401) Methylococcus capsulatus str. Bath 3103776 YP_113127.1 CDS MCA0611 NC_002977.6 646613 646819 R identified by similarity to GP:2935549; match to protein family HMM PF00403; mercuric ion binding protein complement(646613..646819) Methylococcus capsulatus str. Bath 3103775 YP_113128.1 CDS galE-1 NC_002977.6 646874 647848 R identified by similarity to SP:Q56623; UDP-glucose 4-epimerase complement(646874..647848) Methylococcus capsulatus str. Bath 3103748 YP_113129.1 CDS MCA0613 NC_002977.6 647845 648870 R identified by similarity to GP:6690125; match to protein family HMM PF00534; glycosyl transferase family protein complement(647845..648870) Methylococcus capsulatus str. Bath 3103738 YP_113130.1 CDS MCA0614 NC_002977.6 648919 649116 D hypothetical protein 648919..649116 Methylococcus capsulatus str. Bath 3103737 YP_113131.1 CDS MCA0615 NC_002977.6 649225 650781 D identified by similarity to GP:1245347; match to protein family HMM PF03062; alginate O-acetyltransferase 649225..650781 Methylococcus capsulatus str. Bath 3103021 YP_113132.1 CDS MCA0616 NC_002977.6 651064 651834 D hypothetical protein 651064..651834 Methylococcus capsulatus str. Bath 3102605 YP_113133.1 CDS MCA0617 NC_002977.6 652481 652747 R hypothetical protein complement(652481..652747) Methylococcus capsulatus str. Bath 3102604 YP_113134.1 CDS MCA0618 NC_002977.6 652744 653844 R identified by match to protein family HMM PF00534; glycosyl transferase family protein complement(652744..653844) Methylococcus capsulatus str. Bath 3103709 YP_113135.1 CDS MCA0619 NC_002977.6 653841 654776 R identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein complement(653841..654776) Methylococcus capsulatus str. Bath 3102865 YP_113136.1 CDS MCA0620 NC_002977.6 654800 656632 R identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein complement(654800..656632) Methylococcus capsulatus str. Bath 3102864 YP_113137.1 CDS MCA0621 NC_002977.6 656659 657762 R identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein complement(656659..657762) Methylococcus capsulatus str. Bath 3103478 YP_113138.1 CDS MCA0622 NC_002977.6 657817 658842 R identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein complement(657817..658842) Methylococcus capsulatus str. Bath 3103468 YP_113139.1 CDS MCA0623 NC_002977.6 658901 659695 R identified by similarity to GP:11641086; hypothetical protein complement(658901..659695) Methylococcus capsulatus str. Bath 3104984 YP_113140.1 CDS MCA0624 NC_002977.6 659738 661009 R identified by similarity to GP:1890598; hypothetical protein complement(659738..661009) Methylococcus capsulatus str. Bath 3103014 YP_113141.1 CDS MCA0625 NC_002977.6 661019 662272 R identified by similarity to GP:15025336; match to protein family HMM PF00005; carbohydrate ABC transporter ATP-binding protein complement(661019..662272) Methylococcus capsulatus str. Bath 3102364 YP_113142.1 CDS MCA0626 NC_002977.6 662275 663102 R identified by similarity to OMNI:NTL01SS00318; match to protein family HMM PF01061; carbohydrate ABC-transporter permease complement(662275..663102) Methylococcus capsulatus str. Bath 3102363 YP_113143.1 CDS recJ NC_002977.6 664810 666609 D identified by similarity to SP:P21893; match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 664810..666609 Methylococcus capsulatus str. Bath 3102972 YP_113144.1 CDS MCA0629 NC_002977.6 666613 667485 R identified by similarity to SP:P55882; phosphomethylpyrimidine kinase complement(666613..667485) Methylococcus capsulatus str. Bath 3104242 YP_113145.1 CDS MCA0630 NC_002977.6 667623 668132 D hypothetical protein 667623..668132 Methylococcus capsulatus str. Bath 3104241 YP_113146.1 CDS MCA0631 NC_002977.6 668226 668840 D identified by match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein 668226..668840 Methylococcus capsulatus str. Bath 3103703 YP_113147.1 CDS MCA0632 NC_002977.6 668848 669273 D identified by match to protein family HMM PF02472; biopolymer ExbD/TolR family transporter 668848..669273 Methylococcus capsulatus str. Bath 3102794 YP_113148.1 CDS lpxK NC_002977.6 669270 670280 D identified by similarity to SP:P27300; match to protein family HMM PF02606; match to protein family HMM TIGR00682; tetraacyldisaccharide 4'-kinase 669270..670280 Methylococcus capsulatus str. Bath 3102793 YP_113149.1 CDS MCA0634 NC_002977.6 670261 670473 D identified by similarity to OMNI:VC1876; match to protein family HMM PF03966; hypothetical protein 670261..670473 Methylococcus capsulatus str. Bath 3103430 YP_113150.1 CDS kdsB NC_002977.6 670473 671246 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 670473..671246 Methylococcus capsulatus str. Bath 3102776 YP_113151.1 CDS MCA0636 NC_002977.6 671252 671680 D identified by similarity to SP:P76631; hypothetical protein 671252..671680 Methylococcus capsulatus str. Bath 3102775 YP_113152.1 CDS MCA0637 NC_002977.6 671682 672560 R identified by similarity to OMNI:NTL01SM02683; hypothetical protein complement(671682..672560) Methylococcus capsulatus str. Bath 3102507 YP_113153.1 CDS MCA0638 NC_002977.6 672721 673398 D identified by similarity to OMNI:NTL01XF00566; match to protein family HMM PF04366; hypothetical protein 672721..673398 Methylococcus capsulatus str. Bath 3102506 YP_113154.1 CDS MCA0639 NC_002977.6 673420 674538 D identified by match to protein family HMM PF00724; Oye family NADH-dependent flavin oxidoreductase 673420..674538 Methylococcus capsulatus str. Bath 3102412 YP_113155.1 CDS MCA0640 NC_002977.6 674681 674788 R identified by similarity to OMNI:NTL01HP01126; hypothetical protein complement(674681..674788) Methylococcus capsulatus str. Bath 3102411 YP_113156.1 CDS MCA0641 NC_002977.6 674950 675120 D identified by similarity to OMNI:NTL02YP0740; site-specific recombinase phage integrase 674950..675120 Methylococcus capsulatus str. Bath 3102492 YP_113157.1 CDS MCA0644 NC_002977.6 676483 676791 D hypothetical protein 676483..676791 Methylococcus capsulatus str. Bath 3102550 YP_113158.1 CDS MCA0645 NC_002977.6 676937 677161 D hypothetical protein 676937..677161 Methylococcus capsulatus str. Bath 3102549 YP_113159.1 CDS MCA0646 NC_002977.6 677255 677404 R hypothetical protein complement(677255..677404) Methylococcus capsulatus str. Bath 3102414 YP_113160.1 CDS MCA0647 NC_002977.6 677584 678327 D ion transport family protein 677584..678327 Methylococcus capsulatus str. Bath 3104904 YP_113161.1 CDS MCA0648 NC_002977.6 678324 678692 R hypothetical protein complement(678324..678692) Methylococcus capsulatus str. Bath 3102174 YP_113162.1 CDS MCA0649 NC_002977.6 678684 678902 D hypothetical protein 678684..678902 Methylococcus capsulatus str. Bath 3103007 YP_113163.1 CDS cas2 NC_002977.6 684633 684923 R identified by similarity to GP:18893192; match to protein family HMM PF02647; match to protein family HMM TIGR01573; CRISPR-associated Cas2 family protein complement(684633..684923) Methylococcus capsulatus str. Bath 3102490 YP_113164.1 CDS cas1 NC_002977.6 685018 686052 R identified by match to protein family HMM PF01867; match to protein family HMM TIGR00287; CRISPR-associated Cas1 family protein complement(685018..686052) Methylococcus capsulatus str. Bath 3102489 YP_113165.1 CDS cas4 NC_002977.6 686049 686681 R identified by similarity to OMNI:NTL01SPL1235; match to protein family HMM TIGR00372; CRISPR-associated Cas4 family protein complement(686049..686681) Methylococcus capsulatus str. Bath 3102078 YP_113166.1 CDS MCA0653 NC_002977.6 686692 686928 R identified by similarity to SP:Q9X137; hypothetical protein complement(686692..686928) Methylococcus capsulatus str. Bath 3104681 YP_113167.1 CDS MCA0654 NC_002977.6 686941 687870 R identified by similarity to OMNI:NTL01SPL1236; match to protein family HMM PF05107; match to protein family HMM TIGR01595; CRISPR-associated Csh2 family protein complement(686941..687870) Methylococcus capsulatus str. Bath 3104680 YP_113168.1 CDS MCA0655 NC_002977.6 687929 689632 R identified by match to protein family HMM TIGR01863; CRISPR-associated Csd1 family protein complement(687929..689632) Methylococcus capsulatus str. Bath 3104352 YP_113169.1 CDS MCA0656 NC_002977.6 689629 690297 R identified by match to protein family HMM TIGR01876; CRISPR-associated Csd1 family protein complement(689629..690297) Methylococcus capsulatus str. Bath 3102496 YP_113170.1 CDS MCA0657 NC_002977.6 690350 692548 R identified by similarity to OMNI:NTL01BH0337; match to protein family HMM PF00270; match to protein family HMM TIGR01587; CRISPR-associated helicase Cas3 complement(690350..692548) Methylococcus capsulatus str. Bath 3104329 YP_113171.1 CDS MCA0658 NC_002977.6 692541 692882 D hypothetical protein 692541..692882 Methylococcus capsulatus str. Bath 3104328 YP_113172.1 CDS MCA0659 NC_002977.6 692867 693142 R identified by similarity to GP:17135534; match to protein family HMM PF05899; hypothetical protein complement(692867..693142) Methylococcus capsulatus str. Bath 3102157 YP_113173.1 CDS MCA0660 NC_002977.6 693215 693919 R identified by match to protein family HMM PF00753; metallo-beta-lactamase complement(693215..693919) Methylococcus capsulatus str. Bath 3104127 YP_113174.1 CDS MCA0661 NC_002977.6 694018 694866 R identified by similarity to SP:P75959; match to protein family HMM PF00480; ROK family protein complement(694018..694866) Methylococcus capsulatus str. Bath 3104126 YP_113175.1 CDS MCA0662 NC_002977.6 695081 696169 D identified by similarity to SP:P77406; match to protein family HMM PF01594; permease 695081..696169 Methylococcus capsulatus str. Bath 3104799 YP_113176.1 CDS MCA0663 NC_002977.6 696179 697588 R identified by similarity to OMNI:NTL03PA03919; match to protein family HMM PF02562; PhoH family protein complement(696179..697588) Methylococcus capsulatus str. Bath 3102745 YP_113177.1 CDS MCA0664 NC_002977.6 697616 698101 R identified by similarity to GP:17428331; match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein complement(697616..698101) Methylococcus capsulatus str. Bath 3102744 YP_113178.1 CDS MCA0665 NC_002977.6 698127 698654 R identified by similarity to SP:P23483; glycine cleavage system transcriptional repressor complement(698127..698654) Methylococcus capsulatus str. Bath 3102483 YP_113179.1 CDS MCA0666 NC_002977.6 698719 699540 R identified by similarity to SP:P31054; match to protein family HMM PF02673; match to protein family HMM TIGR00753; undecaprenol kinase complement(698719..699540) Methylococcus capsulatus str. Bath 3102456 YP_113180.1 CDS MCA0667 NC_002977.6 699561 700244 R identified by similarity to SP:P09548; match to protein family HMM PF00597; DedA family protein complement(699561..700244) Methylococcus capsulatus str. Bath 3102372 YP_113181.1 CDS MCA0668 NC_002977.6 700511 701092 D identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352; TonB domain-containing protein 700511..701092 Methylococcus capsulatus str. Bath 3102371 YP_113182.1 CDS MCA0669 NC_002977.6 701110 701766 D identified by similarity to OMNI:NTL03PA00199; match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein 701110..701766 Methylococcus capsulatus str. Bath 3102410 YP_113183.1 CDS MCA0670 NC_002977.6 701779 702189 D identified by similarity to OMNI:NTL03PA00200; match to protein family HMM PF02472; biopolymer ExbD/TolR family transporter 701779..702189 Methylococcus capsulatus str. Bath 3102731 YP_113184.1 CDS dapA NC_002977.6 702300 703175 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 702300..703175 Methylococcus capsulatus str. Bath 3102730 YP_113185.1 CDS MCA0672 NC_002977.6 703186 703893 D lipoprotein 703186..703893 Methylococcus capsulatus str. Bath 3102240 YP_113186.1 CDS purL NC_002977.6 703934 707800 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 703934..707800 Methylococcus capsulatus str. Bath 3102254 YP_113187.1 CDS tpiA NC_002977.6 707879 708631 D identified by similarity to SP:P04790; match to protein family HMM PF00121; match to protein family HMM TIGR00419; triosephosphate isomerase 707879..708631 Methylococcus capsulatus str. Bath 3102253 YP_113188.1 CDS secG NC_002977.6 708641 708994 D identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 708641..708994 Methylococcus capsulatus str. Bath 3102221 YP_113189.1 CDS MCA0676 NC_002977.6 709251 710162 D phage integrase site specific recombinase 709251..710162 Methylococcus capsulatus str. Bath 3103351 YP_113190.1 CDS MCA0678 NC_002977.6 710623 711093 D identified by similarity to GP:10312143; match to protein family HMM PF06114; hypothetical protein 710623..711093 Methylococcus capsulatus str. Bath 3103350 YP_113191.1 CDS MCA0680 NC_002977.6 711526 711618 R hypothetical protein complement(711526..711618) Methylococcus capsulatus str. Bath 3104207 YP_113192.1 CDS tgt NC_002977.6 712124 713236 D identified by similarity to SP:P19675; match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449; queuine tRNA-ribosyltransferase 712124..713236 Methylococcus capsulatus str. Bath 3102289 YP_113193.1 CDS MCA0682 NC_002977.6 713276 713632 D identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739; preprotein translocase subunit YajC 713276..713632 Methylococcus capsulatus str. Bath 3102288 YP_113194.2 CDS secD NC_002977.6 713696 715546 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 713696..715546 Methylococcus capsulatus str. Bath 3104789 YP_113195.1 CDS secF NC_002977.6 715558 716487 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 715558..716487 Methylococcus capsulatus str. Bath 3102142 YP_113196.1 CDS MCA0685 NC_002977.6 716539 717420 R identified by similarity to GP:3462874; match to protein family HMM PF03734; hypothetical protein complement(716539..717420) Methylococcus capsulatus str. Bath 3102141 YP_113197.1 CDS MCA0686 NC_002977.6 717482 717766 R identified by similarity to SP:P58039; match to protein family HMM PF03692; hypothetical protein complement(717482..717766) Methylococcus capsulatus str. Bath 3102066 YP_113198.1 CDS MCA0687 NC_002977.6 717763 718206 R identified by match to protein family HMM PF01230; hypothetical protein complement(717763..718206) Methylococcus capsulatus str. Bath 3102927 YP_113199.1 CDS queA NC_002977.6 718203 719246 R identified by similarity to SP:P21516; match to protein family HMM PF02547; match to protein family HMM TIGR00113; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(718203..719246) Methylococcus capsulatus str. Bath 3102926 YP_113200.1 CDS MCA0689 NC_002977.6 719420 719743 R hypothetical protein complement(719420..719743) Methylococcus capsulatus str. Bath 3103818 YP_113201.1 CDS recC NC_002977.6 719857 723273 D identified by similarity to SP:P07648; match to protein family HMM PF04257; match to protein family HMM TIGR01450; exodeoxyribonuclease V subunit gamma 719857..723273 Methylococcus capsulatus str. Bath 3105093 YP_113202.1 CDS recB NC_002977.6 723270 726872 D identified by similarity to SP:P08394; match to protein family HMM PF00580; match to protein family HMM TIGR00609; exodeoxyribonuclease V subunit beta 723270..726872 Methylococcus capsulatus str. Bath 3105092 YP_113203.1 CDS recD NC_002977.6 726869 728680 D identified by similarity to GP:16504071; match to protein family HMM TIGR01447; exodeoxyribonuclease V subunit alpha 726869..728680 Methylococcus capsulatus str. Bath 3105042 YP_113204.1 CDS thrS NC_002977.6 729200 731116 D identified by similarity to SP:P00955; match to protein family HMM PF00587; match to protein family HMM PF02824; match to protein family HMM PF03129; match to protein family HMM TIGR00418; threonyl-tRNA synthetase 729200..731116 Methylococcus capsulatus str. Bath 3103162 YP_113205.1 CDS rpmI NC_002977.6 731689 731886 D identified by similarity to SP:P07085; match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 731689..731886 Methylococcus capsulatus str. Bath 3104932 YP_113206.1 CDS rplT NC_002977.6 731925 732272 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 731925..732272 Methylococcus capsulatus str. Bath 3102241 YP_113207.1 CDS pheS NC_002977.6 732350 733375 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 732350..733375 Methylococcus capsulatus str. Bath 3104892 YP_113208.1 CDS pheT NC_002977.6 733403 735778 D identified by similarity to SP:P07395; match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472; phenylalanyl-tRNA synthetase subunit beta 733403..735778 Methylococcus capsulatus str. Bath 3104891 YP_113209.1 CDS ihfA NC_002977.6 735783 736115 D identified by similarity to SP:P06984; match to protein family HMM PF00216; match to protein family HMM TIGR00987; integration host factor subunit alpha 735783..736115 Methylococcus capsulatus str. Bath 3104878 YP_113210.1 CDS argC NC_002977.6 736321 737367 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 736321..737367 Methylococcus capsulatus str. Bath 3104872 YP_113211.1 CDS MCA0701 NC_002977.6 737364 738329 D involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 737364..738329 Methylococcus capsulatus str. Bath 3104871 YP_113212.1 CDS aroC NC_002977.6 738345 739445 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 738345..739445 Methylococcus capsulatus str. Bath 3104813 YP_113213.1 CDS MCA0703 NC_002977.6 739462 740610 D identified by similarity to SP:Q47142; match to protein family HMM PF03825; match to protein family HMM PF07690; transporter 739462..740610 Methylococcus capsulatus str. Bath 3104765 YP_113214.1 CDS MCA0704 NC_002977.6 740576 741052 R identified by similarity to GP:1848058; hypothetical protein complement(740576..741052) Methylococcus capsulatus str. Bath 3104764 YP_113215.1 CDS MCA0705 NC_002977.6 741066 743405 R identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase complement(741066..743405) Methylococcus capsulatus str. Bath 3104556 YP_113216.1 CDS groES NC_002977.6 743738 744028 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 743738..744028 Methylococcus capsulatus str. Bath 3104795 YP_113217.1 CDS groEL NC_002977.6 744091 745728 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 744091..745728 Methylococcus capsulatus str. Bath 3104794 YP_113218.1 CDS MCA0708 NC_002977.6 745897 747711 D identified by similarity to GP:17132891; match to protein family HMM PF00535; glycosyl transferase group 2 family protein 745897..747711 Methylococcus capsulatus str. Bath 3102981 YP_113219.1 CDS MCA0709 NC_002977.6 747708 749243 D hypothetical protein 747708..749243 Methylococcus capsulatus str. Bath 3102977 YP_113220.1 CDS MCA0710 NC_002977.6 749292 749861 D identified by similarity to OMNI:NTL03PA02230; lipoprotein 749292..749861 Methylococcus capsulatus str. Bath 3104977 YP_113221.1 CDS MCA0711 NC_002977.6 749881 751149 D identified by similarity to OMNI:VC2742; match to protein family HMM PF03631; match to protein family HMM TIGR00765; ribonuclease BN 749881..751149 Methylococcus capsulatus str. Bath 3104976 YP_113222.1 CDS rlmL NC_002977.6 751165 753381 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 751165..753381 Methylococcus capsulatus str. Bath 3103757 YP_113223.1 CDS MCA0713 NC_002977.6 753404 753682 D identified by similarity to SP:O29440; match to protein family HMM PF00708; acylphosphatase 753404..753682 Methylococcus capsulatus str. Bath 3104627 YP_113224.1 CDS MCA0714 NC_002977.6 753689 754501 R identified by similarity to GP:6580646; hypothetical protein complement(753689..754501) Methylococcus capsulatus str. Bath 3104626 YP_113225.1 CDS MCA0715 NC_002977.6 754621 755016 R identified by match to protein family HMM PF01814; hemerythrin family protein complement(754621..755016) Methylococcus capsulatus str. Bath 3104656 YP_113226.1 CDS MCA0716 NC_002977.6 755264 757051 D hypothetical protein 755264..757051 Methylococcus capsulatus str. Bath 3104620 YP_113227.1 CDS MCA0717 NC_002977.6 757132 757938 D identified by similarity to GP:17430383; lipoprotein 757132..757938 Methylococcus capsulatus str. Bath 3104619 YP_113228.1 CDS MCA0718 NC_002977.6 757996 759417 D identified by match to protein family HMM PF00324; amino acid permease 757996..759417 Methylococcus capsulatus str. Bath 3104600 YP_113229.1 CDS rnhA NC_002977.6 759414 759881 D identified by similarity to SP:Q07705; match to protein family HMM PF00075; RNase H 759414..759881 Methylococcus capsulatus str. Bath 3102594 YP_113230.1 CDS dnaQ NC_002977.6 759892 760695 D identified by similarity to SP:P03007; match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01406; DNA polymerase III subunit epsilon 759892..760695 Methylococcus capsulatus str. Bath 3102593 YP_113231.1 CDS MCA0721 NC_002977.6 760774 760974 R hypothetical protein complement(760774..760974) Methylococcus capsulatus str. Bath 3104576 YP_113232.1 CDS MCA0723 NC_002977.6 761422 762522 R identified by match to protein family HMM PF01609; ISMca1, transposase complement(761422..762522) Methylococcus capsulatus str. Bath 3104530 YP_113233.1 CDS MCA0724 NC_002977.6 762597 763982 R identified by match to protein family HMM PF01360; match to protein family HMM PF01494; FAD-binding monooxygenase complement(762597..763982) Methylococcus capsulatus str. Bath 3104529 YP_113234.1 CDS MCA0725 NC_002977.6 764011 764493 R identified by similarity to GP:17135269; hypothetical protein complement(764011..764493) Methylococcus capsulatus str. Bath 3104902 YP_113235.1 CDS MCA0726 NC_002977.6 764490 765095 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(764490..765095) Methylococcus capsulatus str. Bath 3104217 YP_113236.1 CDS MCA0729 NC_002977.6 765941 767665 R hypothetical protein complement(765941..767665) Methylococcus capsulatus str. Bath 3103919 YP_113237.1 CDS MCA0730 NC_002977.6 767646 770486 R hypothetical protein complement(767646..770486) Methylococcus capsulatus str. Bath 3103918 YP_113238.1 CDS MCA0731 NC_002977.6 770686 772437 R hypothetical protein complement(770686..772437) Methylococcus capsulatus str. Bath 3104671 YP_113239.1 CDS MCA0733 NC_002977.6 773003 773692 D identified by match to protein family HMM PF00665; transposase 773003..773692 Methylococcus capsulatus str. Bath 3103800 YP_113240.1 CDS MCA0735 NC_002977.6 775711 776559 R identified by match to protein family HMM PF00665; ISMca3, transposase, OrfB complement(775711..776559) Methylococcus capsulatus str. Bath 3103799 YP_113241.1 CDS MCA0738 NC_002977.6 777502 779049 R identified by match to protein family HMM PF02310; match to protein family HMM PF04055; radical SAM protein complement(777502..779049) Methylococcus capsulatus str. Bath 3103604 YP_113242.1 CDS MCA0739 NC_002977.6 779207 780094 R identified by similarity to OMNI:NTL03PA04466; match to protein family HMM PF03668; hypothetical protein complement(779207..780094) Methylococcus capsulatus str. Bath 3103534 YP_113243.1 CDS yfiA NC_002977.6 780162 780458 R identified by similarity to GP:6141572; match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosomal subunit interface protein complement(780162..780458) Methylococcus capsulatus str. Bath 3103533 YP_113244.1 CDS rpoN NC_002977.6 780492 781955 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 complement(780492..781955) Methylococcus capsulatus str. Bath 3103530 YP_113245.1 CDS MCA0742 NC_002977.6 782037 782762 R identified by similarity to SP:P45073; match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(782037..782762) Methylococcus capsulatus str. Bath 3103022 YP_113246.1 CDS MCA0743 NC_002977.6 782767 783300 R identified by similarity to OMNI:NMB0355; match to protein family HMM PF03968; hypothetical protein complement(782767..783300) Methylococcus capsulatus str. Bath 3102075 YP_113247.1 CDS MCA0744 NC_002977.6 783272 783796 R identified by similarity to OMNI:NTL03PA04460; match to protein family HMM PF06835; hypothetical protein complement(783272..783796) Methylococcus capsulatus str. Bath 3104937 YP_113248.1 CDS MCA0745 NC_002977.6 783844 784419 R identified by similarity to SP:P45396; match to protein family HMM TIGR01662; match to protein family HMM TIGR01670; YrbI family phosphatase complement(783844..784419) Methylococcus capsulatus str. Bath 3104936 YP_113249.1 CDS MCA0746 NC_002977.6 784416 785408 R identified by similarity to SP:P45395; match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; sugar isomerase complement(784416..785408) Methylococcus capsulatus str. Bath 3102095 YP_113250.1 CDS MCA0747 NC_002977.6 785596 786003 D identified by similarity to SP:Q55752; match to protein family HMM PF03330; match to protein family HMM TIGR00413; rare lipoprotein A 785596..786003 Methylococcus capsulatus str. Bath 3104514 YP_113251.1 CDS MCA0748 NC_002977.6 786068 786460 D identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; HesB/YadR/YfhF family protein 786068..786460 Methylococcus capsulatus str. Bath 3104513 YP_113252.1 CDS tyrS NC_002977.6 786655 787848 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 786655..787848 Methylococcus capsulatus str. Bath 3103078 YP_113255.1 CDS MCA0752 NC_002977.6 793377 794519 R hypothetical protein complement(793377..794519) Methylococcus capsulatus str. Bath 3103903 YP_113256.1 CDS gpmA NC_002977.6 794625 796265 R catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(794625..796265) Methylococcus capsulatus str. Bath 3103544 YP_113257.1 CDS MCA0754 NC_002977.6 796292 797656 R identified by similarity to GP:17130435; hypothetical protein complement(796292..797656) Methylococcus capsulatus str. Bath 3102341 YP_113258.1 CDS MCA0755 NC_002977.6 797653 798945 R identified by match to protein family HMM PF01523; TldD/PmbA family protein complement(797653..798945) Methylococcus capsulatus str. Bath 3102340 YP_113259.1 CDS MCA0756 NC_002977.6 799144 799749 D hypothetical protein 799144..799749 Methylococcus capsulatus str. Bath 3102391 YP_113260.1 CDS MCA0757 NC_002977.6 799746 800210 D hypothetical protein 799746..800210 Methylococcus capsulatus str. Bath 3102287 YP_113261.1 CDS sugE NC_002977.6 800215 800532 D identified by similarity to SP:P30743; match to protein family HMM PF00893; sugE protein 800215..800532 Methylococcus capsulatus str. Bath 3102286 YP_113262.1 CDS MCA0759 NC_002977.6 800656 800961 D identified by similarity to OMNI:CC2267; hypothetical protein 800656..800961 Methylococcus capsulatus str. Bath 3103422 YP_113263.1 CDS MCA0760 NC_002977.6 801213 801500 D identified by similarity to SP:P16022; match to protein family HMM PF00111; (2Fe-2S) ferredoxin 801213..801500 Methylococcus capsulatus str. Bath 3102353 YP_113264.1 CDS MCA0761 NC_002977.6 801552 801680 D hypothetical protein 801552..801680 Methylococcus capsulatus str. Bath 3102352 YP_113265.1 CDS bfr-1 NC_002977.6 801763 802227 R identified by similarity to SP:P22759; match to protein family HMM PF00210; match to protein family HMM TIGR00754; bacterioferritin complement(801763..802227) Methylococcus capsulatus str. Bath 3103413 YP_113266.1 CDS MCA0763 NC_002977.6 802377 803945 D identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 802377..803945 Methylococcus capsulatus str. Bath 3102396 YP_113267.1 CDS nifA NC_002977.6 803938 805473 D identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR01199; match to protein family HMM TIGR01817; transcriptional regulator NifA 803938..805473 Methylococcus capsulatus str. Bath 3102395 YP_113268.1 CDS MCA0765 NC_002977.6 805529 806413 D hypothetical protein 805529..806413 Methylococcus capsulatus str. Bath 3103708 YP_113269.1 CDS MCA0766 NC_002977.6 806517 807038 R hypothetical protein complement(806517..807038) Methylococcus capsulatus str. Bath 3102515 YP_113270.1 CDS MCA0767 NC_002977.6 807108 807458 D identified by similarity to GP:10505056; match to protein family HMM TIGR00426; competence protein ComE 807108..807458 Methylococcus capsulatus str. Bath 3102514 YP_113271.1 CDS MCA0768 NC_002977.6 807524 808525 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(807524..808525) Methylococcus capsulatus str. Bath 3104972 YP_113272.1 CDS MCA0769 NC_002977.6 808541 812107 R identified by similarity to SP:P52647; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM PF02775; match to protein family HMM TIGR02176; pyruvate ferredoxin/flavodoxin oxidoreductase complement(808541..812107) Methylococcus capsulatus str. Bath 3103870 YP_113273.1 CDS MCA0770 NC_002977.6 812113 813753 R unknown function; glutamate synthase complement(812113..813753) Methylococcus capsulatus str. Bath 3104211 YP_113274.1 CDS MCA0771 NC_002977.6 814117 815292 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(814117..815292) Methylococcus capsulatus str. Bath 3104210 YP_113275.1 CDS MCA0772 NC_002977.6 815280 816011 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(815280..816011) Methylococcus capsulatus str. Bath 3102614 YP_113276.1 CDS pepN NC_002977.6 816733 819384 D identified by similarity to SP:P04825; match to protein family HMM PF01433; aminopeptidase 816733..819384 Methylococcus capsulatus str. Bath 3104238 YP_113277.1 CDS MCA0775 NC_002977.6 819413 820441 D identified by similarity to OMNI:MT1911; match to protein family HMM PF00107; alcohol dehydrogenase 819413..820441 Methylococcus capsulatus str. Bath 3104237 YP_113278.1 CDS MCA0776 NC_002977.6 820452 821021 R hypothetical protein complement(820452..821021) Methylococcus capsulatus str. Bath 3102494 YP_113279.1 CDS MCA0777 NC_002977.6 821027 821674 R identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family transcriptional regulator complement(821027..821674) Methylococcus capsulatus str. Bath 3102173 YP_113280.1 CDS MCA0778 NC_002977.6 821671 822990 R identified by similarity to SP:P29905; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; methanol utilization control sensor protein moxY complement(821671..822990) Methylococcus capsulatus str. Bath 3102523 YP_113281.1 CDS mxaF NC_002977.6 823278 825083 D identified by similarity to SP:P16027; match to protein family HMM PF01011; methanol dehydrogenase, large subunit 823278..825083 Methylococcus capsulatus str. Bath 3102522 YP_113282.1 CDS MCA0780 NC_002977.6 825441 826013 D identified by similarity to GP:7258335; MxaJ protein 825441..826013 Methylococcus capsulatus str. Bath 3102719 YP_113283.1 CDS MCA0781 NC_002977.6 826019 826498 D identified by similarity to SP:P14774; match to protein family HMM PF00034; cytochrome c family protein 826019..826498 Methylococcus capsulatus str. Bath 3104030 YP_113284.1 CDS mxaI NC_002977.6 826540 826824 D identified by similarity to SP:P14775; match to protein family HMM PF02315; methanol dehydrogenase, small subunit 826540..826824 Methylococcus capsulatus str. Bath 3104029 YP_113285.1 CDS moxR NC_002977.6 826988 828007 D identified by similarity to SP:P29901; moxR protein 826988..828007 Methylococcus capsulatus str. Bath 3102135 YP_113286.1 CDS MCA0784 NC_002977.6 828004 828846 D identified by similarity to GP:19917169; hypothetical protein 828004..828846 Methylococcus capsulatus str. Bath 3104041 YP_113287.1 CDS MCA0785 NC_002977.6 829035 829907 D identified by similarity to GP:773180; MxaA protein 829035..829907 Methylococcus capsulatus str. Bath 3102223 YP_113288.1 CDS MCA0786 NC_002977.6 829904 830887 D identified by similarity to GP:1164996; MxaC protein 829904..830887 Methylococcus capsulatus str. Bath 3102222 YP_113289.1 CDS MCA0787 NC_002977.6 830929 831447 D identified by similarity to GP:2828246; MxaK protein 830929..831447 Methylococcus capsulatus str. Bath 3102525 YP_113290.1 CDS MCA0788 NC_002977.6 831444 832415 D identified by similarity to GP:773183; MxaL protein 831444..832415 Methylococcus capsulatus str. Bath 3104366 YP_113291.1 CDS MCA0789 NC_002977.6 832434 832958 D identified by similarity to GP:773184; MxaD protein 832434..832958 Methylococcus capsulatus str. Bath 3104365 YP_113292.1 CDS MCA0791 NC_002977.6 833983 835224 D identified by similarity to OMNI:AF2308; transporter 833983..835224 Methylococcus capsulatus str. Bath 3102389 YP_113293.1 CDS MCA0792 NC_002977.6 835417 835626 D identified by similarity to SP:P80415; match to protein family HMM PF00313; cold shock protein 835417..835626 Methylococcus capsulatus str. Bath 3103138 YP_113294.1 CDS MCA0793 NC_002977.6 835640 836065 D identified by similarity to GP:2624328; match to protein family HMM PF00076; RNA-binding protein 835640..836065 Methylococcus capsulatus str. Bath 3103031 YP_113295.1 CDS MCA0794 NC_002977.6 836081 836749 R catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase complement(836081..836749) Methylococcus capsulatus str. Bath 3104309 YP_113296.1 CDS MCA0795 NC_002977.6 836769 837131 R identified by similarity to OMNI:NTL03PA00360; hypothetical protein complement(836769..837131) Methylococcus capsulatus str. Bath 3104308 YP_113297.1 CDS MCA0796 NC_002977.6 837293 837880 R identified by match to protein family HMM PF05951; match to protein family HMM TIGR01409; Tat pathway signal sequence domain-containing protein complement(837293..837880) Methylococcus capsulatus str. Bath 3104022 YP_113298.1 CDS MCA0797 NC_002977.6 838116 838799 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR01691; HAD superfamily hydrolase complement(838116..838799) Methylococcus capsulatus str. Bath 3103415 YP_113299.1 CDS MCA0798 NC_002977.6 838796 839356 R identified by match to protein family HMM PF03079; ARD/ARD' family dioxygenase complement(838796..839356) Methylococcus capsulatus str. Bath 3103414 YP_113300.1 CDS MCA0799 NC_002977.6 839353 840036 R catalyzes the formation of diketo methylthiopentyl phosphate from methylribulose phosphate in the methionine salvage pathway; methylthioribulose-1-phosphate dehydratase complement(839353..840036) Methylococcus capsulatus str. Bath 3104864 YP_113301.1 CDS MCA0800 NC_002977.6 840101 840892 R identified by similarity to GP:9947507; hypothetical protein complement(840101..840892) Methylococcus capsulatus str. Bath 3104905 YP_113302.1 CDS MCA0802 NC_002977.6 841752 841961 D hypothetical protein 841752..841961 Methylococcus capsulatus str. Bath 3102727 YP_113303.1 CDS MCA0803 NC_002977.6 842004 842462 D hypothetical protein 842004..842462 Methylococcus capsulatus str. Bath 3102726 YP_113304.1 CDS MCA0804 NC_002977.6 842520 843104 D hypothetical protein 842520..843104 Methylococcus capsulatus str. Bath 3103669 YP_113305.1 CDS MCA0805 NC_002977.6 843097 845592 D identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 843097..845592 Methylococcus capsulatus str. Bath 3103802 YP_113306.1 CDS MCA0806 NC_002977.6 845746 846396 D identified by similarity to OMNI:NMB1963; hypothetical protein 845746..846396 Methylococcus capsulatus str. Bath 3103801 YP_113307.1 CDS MCA0807 NC_002977.6 846473 848152 R identified by match to protein family HMM PF05425; copper resistance protein complement(846473..848152) Methylococcus capsulatus str. Bath 3102329 YP_113308.1 CDS MCA0808 NC_002977.6 848171 848551 R identified by similarity to OMNI:NTL01ST1872; hypothetical protein complement(848171..848551) Methylococcus capsulatus str. Bath 3103563 YP_113309.1 CDS MCA0809 NC_002977.6 848578 849966 R identified by similarity to SP:Q58131; match to protein family HMM PF00202; acetylornithine aminotransferase complement(848578..849966) Methylococcus capsulatus str. Bath 3103562 YP_113310.1 CDS MCA0810 NC_002977.6 850020 852674 R identified by similarity to GP:3164083; hypothetical protein complement(850020..852674) Methylococcus capsulatus str. Bath 3103062 YP_113311.1 CDS MCA0811 NC_002977.6 852683 853393 R identified by match to protein family HMM PF01048; phosphorylase complement(852683..853393) Methylococcus capsulatus str. Bath 3103565 YP_113312.1 CDS sqhC NC_002977.6 853390 855354 R identified by similarity to GP:3164082; match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787; squalene-hopene cyclase complement(853390..855354) Methylococcus capsulatus str. Bath 3102260 YP_113313.1 CDS sqs NC_002977.6 855386 856474 R identified by similarity to GP:3164081; match to protein family HMM PF00494; squalene synthase complement(855386..856474) Methylococcus capsulatus str. Bath 3102259 YP_113314.1 CDS MCA0815 NC_002977.6 856863 857978 D identified by match to protein family HMM PF04055; MoaA/NifB/PqqE family protein 856863..857978 Methylococcus capsulatus str. Bath 3102093 YP_113315.1 CDS apt NC_002977.6 858054 858569 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(858054..858569) Methylococcus capsulatus str. Bath 3103194 YP_113316.1 CDS dxs NC_002977.6 858569 860488 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(858569..860488) Methylococcus capsulatus str. Bath 3103193 YP_113317.1 CDS ispA NC_002977.6 860628 861530 R identified by similarity to SP:P45204; match to protein family HMM PF00348; geranyltranstransferase complement(860628..861530) Methylococcus capsulatus str. Bath 3104845 YP_113318.1 CDS xseB NC_002977.6 861520 861750 R identified by similarity to SP:P22938; match to protein family HMM PF02609; match to protein family HMM TIGR01280; exodeoxyribonuclease VII small subunit complement(861520..861750) Methylococcus capsulatus str. Bath 3102058 YP_113319.1 CDS parE NC_002977.6 861907 863793 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 861907..863793 Methylococcus capsulatus str. Bath 3103701 YP_113320.1 CDS parC NC_002977.6 863813 866047 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 863813..866047 Methylococcus capsulatus str. Bath 3103700 YP_113321.1 CDS MCA0822 NC_002977.6 866094 866264 D hypothetical protein 866094..866264 Methylococcus capsulatus str. Bath 3103519 YP_113322.1 CDS MCA0823 NC_002977.6 866292 867380 D identified by match to protein family HMM PF00665; match to protein family HMM PF01527; ISMca4, transposase, OrfAB 866292..867380 Methylococcus capsulatus str. Bath 3103467 YP_113323.1 CDS MCA0825 NC_002977.6 867863 868732 D identified by match to protein family HMM PF00165; AraC family transcriptional regulator 867863..868732 Methylococcus capsulatus str. Bath 3104759 YP_113324.1 CDS MCA0826 NC_002977.6 868964 869389 D identified by similarity to GP:2828248; hypothetical protein 868964..869389 Methylococcus capsulatus str. Bath 3102786 YP_113325.1 CDS MCA0827 NC_002977.6 869400 869987 R identified by similarity to GP:15980550; match to protein family HMM PF01966; hypothetical protein complement(869400..869987) Methylococcus capsulatus str. Bath 3102785 YP_113326.1 CDS MCA0828 NC_002977.6 869986 870561 D chemotaxis protein CheW 869986..870561 Methylococcus capsulatus str. Bath 3104443 YP_113327.1 CDS MCA0829 NC_002977.6 870552 871805 D identified by match to protein family HMM PF01739; chemotaxis protein CheR 870552..871805 Methylococcus capsulatus str. Bath 3103241 YP_113328.1 CDS MCA0830 NC_002977.6 871802 872455 D chemotaxis protein CheW 871802..872455 Methylococcus capsulatus str. Bath 3103240 YP_113329.1 CDS MCA0831 NC_002977.6 872452 874710 D identified by similarity to SP:P18769; match to protein family HMM PF00072; match to protein family HMM PF01627; match to protein family HMM PF02518; chemotaxis protein 872452..874710 Methylococcus capsulatus str. Bath 3103045 YP_113330.1 CDS MCA0832 NC_002977.6 874707 875774 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 874707..875774 Methylococcus capsulatus str. Bath 3104985 YP_113331.1 CDS MCA0833 NC_002977.6 875767 876936 D identified by match to protein family HMM PF00072; match to protein family HMM PF07228; response regulator 875767..876936 Methylococcus capsulatus str. Bath 3102935 YP_113332.1 CDS MCA0835 NC_002977.6 878862 880022 D identified by similarity to OMNI:NTL01SMA01148; match to protein family HMM PF02661; Fic family protein 878862..880022 Methylococcus capsulatus str. Bath 3102881 YP_113333.1 CDS MCA0836 NC_002977.6 880101 881351 D identified by match to protein family HMM PF01420; type I restriction-modification system subunit S 880101..881351 Methylococcus capsulatus str. Bath 3103154 YP_338556.1 CDS MCA0837 NC_002977.6 881348 881968 D identified by similarity to SP:P44014; hypothetical protein 881348..881968 Methylococcus capsulatus str. Bath 3102853 YP_113334.1 CDS MCA0838 NC_002977.6 881968 885600 D identified by match to protein family HMM PF01541; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; type I restriction-modification system, R subunit 881968..885600 Methylococcus capsulatus str. Bath 3102849 YP_113335.1 CDS MCA0839 NC_002977.6 885644 886222 R hypothetical protein complement(885644..886222) Methylococcus capsulatus str. Bath 3102848 YP_113336.1 CDS MCA0840 NC_002977.6 886241 886984 D identified by similarity to SP:P30860; amino acid ABC transporter amino acid-binding protein 886241..886984 Methylococcus capsulatus str. Bath 3102694 YP_113337.1 CDS bsaA NC_002977.6 886981 887475 R identified by similarity to SP:P52035; match to protein family HMM PF00255; glutathione peroxidase complement(886981..887475) Methylococcus capsulatus str. Bath 3102693 YP_113338.1 CDS MCA0842 NC_002977.6 887514 888689 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(887514..888689) Methylococcus capsulatus str. Bath 3102674 YP_113339.1 CDS MCA0843 NC_002977.6 888926 889615 R in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ complement(888926..889615) Methylococcus capsulatus str. Bath 3102835 YP_113340.1 CDS MCA0844 NC_002977.6 889584 890516 R in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY complement(889584..890516) Methylococcus capsulatus str. Bath 3102834 YP_113341.1 CDS MCA0845 NC_002977.6 890592 891017 R hypothetical protein complement(890592..891017) Methylococcus capsulatus str. Bath 3102664 YP_113342.1 CDS MCA0846 NC_002977.6 891054 891599 R hypothetical protein complement(891054..891599) Methylococcus capsulatus str. Bath 3104987 YP_113343.1 CDS gltA NC_002977.6 891889 893178 D identified by similarity to SP:Q10530; match to protein family HMM PF00285; match to protein family HMM TIGR01798; citrate synthase 891889..893178 Methylococcus capsulatus str. Bath 3104986 YP_113344.1 CDS htpG NC_002977.6 893231 895135 R molecular chaperone; heat shock protein 90 complement(893231..895135) Methylococcus capsulatus str. Bath 3104903 YP_113345.1 CDS MCA0850 NC_002977.6 895495 896517 R identified by match to protein family HMM PF01699; cation transporter complement(895495..896517) Methylococcus capsulatus str. Bath 3104870 YP_113346.1 CDS ftsH-1 NC_002977.6 896534 898447 R identified by similarity to SP:P28691; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; cell division protein FtsH complement(896534..898447) Methylococcus capsulatus str. Bath 3102359 YP_113347.1 CDS MCA0853 NC_002977.6 899506 902040 R identified by match to protein family HMM PF05362; ATP-dependent protease complement(899506..902040) Methylococcus capsulatus str. Bath 3102258 YP_113348.1 CDS rdgC NC_002977.6 902058 902990 D Required for efficient pilin antigenic variation; recombination associated protein 902058..902990 Methylococcus capsulatus str. Bath 3102257 YP_113349.1 CDS MCA0855 NC_002977.6 903021 904106 D identified by similarity to OMNI:NTL03PA02854; match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 903021..904106 Methylococcus capsulatus str. Bath 3102235 YP_113350.1 CDS MCA0856 NC_002977.6 904186 904458 R identified by similarity to GP:17428249; match to protein family HMM PF04362; hypothetical protein complement(904186..904458) Methylococcus capsulatus str. Bath 3102175 YP_113351.1 CDS mutY NC_002977.6 904474 905535 R identified by similarity to SP:P17802; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; A/G-specific adenine glycosylase complement(904474..905535) Methylococcus capsulatus str. Bath 3103542 YP_113352.1 CDS lysA NC_002977.6 905765 907012 D identified by similarity to SP:P19572; match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase 905765..907012 Methylococcus capsulatus str. Bath 3103541 YP_113353.1 CDS dapF NC_002977.6 907022 907849 D identified by similarity to SP:P08885; match to protein family HMM PF01678; match to protein family HMM TIGR00652; diaminopimelate epimerase 907022..907849 Methylococcus capsulatus str. Bath 3104609 YP_113354.1 CDS MCA0860 NC_002977.6 907846 908550 D identified by similarity to OMNI:NTL03PA05280; match to protein family HMM PF04340; hypothetical protein 907846..908550 Methylococcus capsulatus str. Bath 3105081 YP_113355.1 CDS xerC NC_002977.6 908558 909472 D identified by similarity to SP:P22885; match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02224; integrase/recombinase XerC 908558..909472 Methylococcus capsulatus str. Bath 3105080 YP_113356.1 CDS MCA0862 NC_002977.6 909441 910571 D identified by similarity to OMNI:NTL03PA04843; hypothetical protein 909441..910571 Methylococcus capsulatus str. Bath 3103389 YP_113357.1 CDS MCA0863 NC_002977.6 910596 910889 D identified by similarity to OMNI:NTL03PA01616; hypothetical protein 910596..910889 Methylococcus capsulatus str. Bath 3103225 YP_113358.1 CDS MCA0864 NC_002977.6 910891 911439 R identified by similarity to OMNI:VC2536; match to protein family HMM PF04751; hypothetical protein complement(910891..911439) Methylococcus capsulatus str. Bath 3103224 YP_113359.1 CDS MCA0865 NC_002977.6 911526 912335 R identified by similarity to OMNI:NTL03PA04030; match to protein family HMM PF06167; hypothetical protein complement(911526..912335) Methylococcus capsulatus str. Bath 3103483 YP_113360.1 CDS MCA0866 NC_002977.6 912399 913913 D identified by similarity to GP:18145308; match to protein family HMM PF04055; oxygen-independent coproporphyrinogen III oxidase 912399..913913 Methylococcus capsulatus str. Bath 3105087 YP_113361.1 CDS MCA0867 NC_002977.6 913980 914573 D identified by match to protein family HMM PF01713; Smr domain-containing protein 913980..914573 Methylococcus capsulatus str. Bath 3105086 YP_113362.1 CDS MCA0868 NC_002977.6 914570 915667 D identified by similarity to GP:17131131; hypothetical protein 914570..915667 Methylococcus capsulatus str. Bath 3102293 YP_113363.1 CDS potD NC_002977.6 915687 916739 R identified by similarity to SP:P23861; match to protein family HMM PF01547; spermidine/putrescine ABC transporter substrate-binding protein complement(915687..916739) Methylococcus capsulatus str. Bath 3103639 YP_113364.1 CDS potC NC_002977.6 916712 917524 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter complement(916712..917524) Methylococcus capsulatus str. Bath 3103638 YP_113365.1 CDS potB NC_002977.6 917624 918478 R identified by similarity to SP:P23860; match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease PotB complement(917624..918478) Methylococcus capsulatus str. Bath 3103110 YP_113366.1 CDS potA NC_002977.6 918462 919619 R functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase complement(918462..919619) Methylococcus capsulatus str. Bath 3104271 YP_113367.1 CDS MCA0873 NC_002977.6 919871 920374 D ATP-dependent protease La 919871..920374 Methylococcus capsulatus str. Bath 3104270 YP_113368.1 CDS MCA0874 NC_002977.6 920385 921584 D identified by similarity to SP:P77234; hypothetical protein 920385..921584 Methylococcus capsulatus str. Bath 3104290 YP_113369.1 CDS MCA0875 NC_002977.6 921704 923695 D identified by match to protein family HMM PF00082; match to protein family HMM PF05922; serine protease 921704..923695 Methylococcus capsulatus str. Bath 3104591 YP_113370.1 CDS MCA0876 NC_002977.6 923746 924225 D hypothetical protein 923746..924225 Methylococcus capsulatus str. Bath 3104590 YP_113371.1 CDS MCA0877 NC_002977.6 924243 924821 R exonuclease complement(924243..924821) Methylococcus capsulatus str. Bath 3104277 YP_113372.1 CDS MCA0878 NC_002977.6 925060 925539 D identified by similarity to OMNI:NTL02ML2446; hypothetical protein 925060..925539 Methylococcus capsulatus str. Bath 3103023 YP_113373.1 CDS MCA0879 NC_002977.6 925588 926709 D identified by similarity to OMNI:NTL03PA00106; match to protein family HMM PF00034; match to protein family HMM PF00116; match to protein family HMM PF02790; cytochrome c oxidase subunit II 925588..926709 Methylococcus capsulatus str. Bath 3103862 YP_113374.1 CDS MCA0880 NC_002977.6 926742 928367 D identified by similarity to SP:P31833; match to protein family HMM PF00115; cytochrome c oxidase subunit I 926742..928367 Methylococcus capsulatus str. Bath 3105003 YP_113375.1 CDS MCA0881 NC_002977.6 928419 928529 D hypothetical protein 928419..928529 Methylococcus capsulatus str. Bath 3104847 YP_113376.1 CDS MCA0882 NC_002977.6 928526 929074 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 928526..929074 Methylococcus capsulatus str. Bath 3104846 YP_113377.1 CDS MCA0883 NC_002977.6 929111 929977 D identified by similarity to OMNI:NTL03PA00109; match to protein family HMM PF00510; cytochrome c oxidase subunit III 929111..929977 Methylococcus capsulatus str. Bath 3103561 YP_113378.1 CDS MCA0887 NC_002977.6 932446 933396 R identified by match to protein family HMM PF01609; ISMca7, transposase complement(932446..933396) Methylococcus capsulatus str. Bath 3103432 YP_113379.1 CDS MCA0888 NC_002977.6 933497 933970 D identified by similarity to GP:18144127; hypothetical protein 933497..933970 Methylococcus capsulatus str. Bath 3102827 YP_113380.1 CDS MCA0891 NC_002977.6 936887 937921 D identified by similarity to GP:18159248; match to protein family HMM PF04055; hypothetical protein 936887..937921 Methylococcus capsulatus str. Bath 3102218 YP_113381.1 CDS MCA0892 NC_002977.6 937918 938208 D identified by similarity to GP:18144126; hypothetical protein 937918..938208 Methylococcus capsulatus str. Bath 3102217 YP_113382.1 CDS MCA0893 NC_002977.6 938257 939087 D hypothetical protein 938257..939087 Methylococcus capsulatus str. Bath 3105032 YP_113383.1 CDS MCA0894 NC_002977.6 939163 940965 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 939163..940965 Methylococcus capsulatus str. Bath 3105031 YP_113384.1 CDS MCA0898 NC_002977.6 942432 943286 R hypothetical protein complement(942432..943286) Methylococcus capsulatus str. Bath 3103923 YP_113385.1 CDS MCA0899 NC_002977.6 943502 944518 R identified by similarity to SP:P06997; match to protein family HMM PF01547; match to protein family HMM TIGR00971; sulfate starvation-induced protein 2 complement(943502..944518) Methylococcus capsulatus str. Bath 3103922 YP_113386.1 CDS MCA0900 NC_002977.6 944587 946206 R hypothetical protein complement(944587..946206) Methylococcus capsulatus str. Bath 3104836 YP_113387.1 CDS MCA0902 NC_002977.6 946878 947702 D identified by match to protein family HMM PF00953; glycosyl transferase family protein 946878..947702 Methylococcus capsulatus str. Bath 3103121 YP_113388.1 CDS MCA0903 NC_002977.6 947706 949553 D identified by match to protein family HMM PF02719; polysaccharide biosynthesis protein 947706..949553 Methylococcus capsulatus str. Bath 3103120 YP_113389.1 CDS rplM NC_002977.6 949633 950061 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 949633..950061 Methylococcus capsulatus str. Bath 3104251 YP_113390.1 CDS rpsI NC_002977.6 950078 950470 D identified by similarity to SP:P02363; match to protein family HMM PF00380; 30S ribosomal protein S9 950078..950470 Methylococcus capsulatus str. Bath 3104877 YP_113391.1 CDS MCA0906 NC_002977.6 950923 951255 D identified by match to protein family HMM PF01527; ISMca2, transposase, OrfA 950923..951255 Methylococcus capsulatus str. Bath 3102080 YP_113392.1 CDS MCA0907 NC_002977.6 951252 952127 D identified by match to protein family HMM PF00665; ISMca2, transposase, OrfB 951252..952127 Methylococcus capsulatus str. Bath 3102079 YP_113393.1 CDS MCA0908 NC_002977.6 952211 953740 R identified by match to protein family HMM PF00004; ATPase AAA complement(952211..953740) Methylococcus capsulatus str. Bath 3104754 YP_113394.1 CDS MCA0909 NC_002977.6 953897 954274 R identified by similarity to OMNI:NTL01SMB00214; hypothetical protein complement(953897..954274) Methylococcus capsulatus str. Bath 3103450 YP_113395.1 CDS MCA0910 NC_002977.6 954361 954939 R identified by similarity to GP:13786684; match to protein family HMM PF00484; carbonic anhydrase complement(954361..954939) Methylococcus capsulatus str. Bath 3103449 YP_113396.1 CDS MCA0911 NC_002977.6 954974 955618 R identified by similarity to GP:17129730; match to protein family HMM PF06080; hypothetical protein complement(954974..955618) Methylococcus capsulatus str. Bath 3102382 YP_113397.1 CDS MCA0913 NC_002977.6 955844 957490 D identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator 955844..957490 Methylococcus capsulatus str. Bath 3102741 YP_113398.1 CDS MCA0914 NC_002977.6 957595 957960 D Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; acyl carrier protein 957595..957960 Methylococcus capsulatus str. Bath 3102740 YP_113399.1 CDS MCA0915 NC_002977.6 957924 958634 D identified by similarity to GP:19483795; hypothetical protein 957924..958634 Methylococcus capsulatus str. Bath 3104760 YP_113400.1 CDS MCA0917 NC_002977.6 960284 961231 D hypothetical protein 960284..961231 Methylococcus capsulatus str. Bath 3103032 YP_113401.1 CDS MCA0918 NC_002977.6 961273 961818 D identified by similarity to GP:17427440; lipoprotein 961273..961818 Methylococcus capsulatus str. Bath 3102960 YP_113402.1 CDS MCA0919 NC_002977.6 961815 964190 D identified by similarity to GP:17427439; hypothetical protein 961815..964190 Methylococcus capsulatus str. Bath 3102959 YP_113403.1 CDS MCA0920 NC_002977.6 964187 964999 D identified by match to protein family HMM PF01522; polysaccharide deacetylase 964187..964999 Methylococcus capsulatus str. Bath 3104310 YP_113404.1 CDS MCA0921 NC_002977.6 964996 965721 D identified by similarity to GP:6959523; hypothetical protein 964996..965721 Methylococcus capsulatus str. Bath 3102582 YP_113405.1 CDS MCA0922 NC_002977.6 965866 966666 R hypothetical protein complement(965866..966666) Methylococcus capsulatus str. Bath 3102581 YP_113406.1 CDS MCA0923 NC_002977.6 966650 966784 R hypothetical protein complement(966650..966784) Methylococcus capsulatus str. Bath 3103296 YP_113407.1 CDS MCA0924 NC_002977.6 966842 968032 D FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 966842..968032 Methylococcus capsulatus str. Bath 3102313 YP_113408.1 CDS MCA0925 NC_002977.6 968029 968829 D identified by similarity to GP:17427436; beta-ketoacyl synthase domain-containing protein 968029..968829 Methylococcus capsulatus str. Bath 3105014 YP_113409.1 CDS MCA0926 NC_002977.6 968820 969281 D identified by similarity to SP:P21773; (3R)-hydroxymyristoyl-ACP dehydratase 968820..969281 Methylococcus capsulatus str. Bath 3105013 YP_113410.1 CDS fabG NC_002977.6 969278 969997 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 969278..969997 Methylococcus capsulatus str. Bath 3102445 YP_113411.1 CDS MCA0928 NC_002977.6 970013 971305 D identified by similarity to OMNI:NTL01SS00413; sodium/hydrogen exchanger family protein 970013..971305 Methylococcus capsulatus str. Bath 3102169 YP_113412.1 CDS MCA0929 NC_002977.6 971356 971682 R hypothetical protein complement(971356..971682) Methylococcus capsulatus str. Bath 3102168 YP_338557.1 CDS MCA0929.1 NC_002977.6 972303 972596 R identified by match to protein family HMM TIGR01873; CRISPR-associated Cas2 family protein complement(972303..972596) Methylococcus capsulatus str. Bath 3703673 YP_113413.1 CDS MCA0930 NC_002977.6 972568 973458 R identified by similarity to GP:16504011; match to protein family HMM TIGR00287; CRISPR-associated Cas1 family protein complement(972568..973458) Methylococcus capsulatus str. Bath 3102101 YP_113414.1 CDS MCA0931 NC_002977.6 973455 974174 R CRISPR-associated Cse3 family protein complement(973455..974174) Methylococcus capsulatus str. Bath 3104787 YP_113415.1 CDS MCA0932 NC_002977.6 974171 974920 R identified by similarity to OMNI:NTL01EC02697; match to protein family HMM TIGR01868; CRISPR-associated Cas5e family protein complement(974171..974920) Methylococcus capsulatus str. Bath 3104729 YP_113416.1 CDS MCA0933 NC_002977.6 974931 976175 R identified by similarity to GP:16504014; match to protein family HMM TIGR01869; CRISPR-associated Cse4 family protein complement(974931..976175) Methylococcus capsulatus str. Bath 3104728 YP_113417.1 CDS MCA0934 NC_002977.6 976249 976761 R CT1973 family; identified by match to protein family HMM TIGR02548; CRISPR-associated protein complement(976249..976761) Methylococcus capsulatus str. Bath 3102534 YP_113418.1 CDS MCA0935 NC_002977.6 976739 978301 R CT1972 family; identified by match to protein family HMM TIGR02547; CRISPR-associated protein complement(976739..978301) Methylococcus capsulatus str. Bath 3104282 YP_113419.1 CDS MCA0936 NC_002977.6 978285 980930 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR01587; CRISPR-associated helicase Cas3 complement(978285..980930) Methylococcus capsulatus str. Bath 3104281 YP_113420.1 CDS MCA0938 NC_002977.6 981768 982226 D identified by similarity to SP:P19934; hypothetical protein 981768..982226 Methylococcus capsulatus str. Bath 3102670 YP_113421.1 CDS MCA0940 NC_002977.6 982720 983109 D identified by similarity to GP:15979130; match to protein family HMM PF00034; cytochrome c family protein 982720..983109 Methylococcus capsulatus str. Bath 3102669 YP_113422.1 CDS MCA0941 NC_002977.6 983200 985626 R identified by match to protein family HMM PF01301; glycosyl hydrolase complement(983200..985626) Methylococcus capsulatus str. Bath 3103992 YP_113423.1 CDS MCA0942 NC_002977.6 985637 987256 R identified by similarity to PIR:JE0181; match to protein family HMM PF00128; oligo-1,6-glucosidase complement(985637..987256) Methylococcus capsulatus str. Bath 3102553 YP_113424.1 CDS MCA0943 NC_002977.6 987253 988371 R hypothetical protein complement(987253..988371) Methylococcus capsulatus str. Bath 3102552 YP_113425.1 CDS MCA0944 NC_002977.6 988370 988729 D hypothetical protein 988370..988729 Methylococcus capsulatus str. Bath 3103202 YP_113426.1 CDS MCA0945 NC_002977.6 988824 989513 D identified by similarity to SP:Q49116; hypothetical protein 988824..989513 Methylococcus capsulatus str. Bath 3103631 YP_113427.1 CDS MCA0947 NC_002977.6 989799 991337 D hypothetical protein 989799..991337 Methylococcus capsulatus str. Bath 3103630 YP_113428.1 CDS MCA0948 NC_002977.6 991386 991757 D identified by match to protein family HMM PF00034; cytochrome c family protein 991386..991757 Methylococcus capsulatus str. Bath 3102369 YP_113429.1 CDS MCA0949 NC_002977.6 991850 992905 D identified by similarity to SP:P39665; phosphate binding protein 991850..992905 Methylococcus capsulatus str. Bath 3104964 YP_113430.1 CDS MCA0950 NC_002977.6 993263 994288 D identified by match to protein family HMM PF01425; amidase 993263..994288 Methylococcus capsulatus str. Bath 3102187 YP_113431.1 CDS MCA0951 NC_002977.6 994343 995344 D hypothetical protein 994343..995344 Methylococcus capsulatus str. Bath 3104167 YP_113432.1 CDS ccmC NC_002977.6 995346 996077 R identified by similarity to SP:P33929; match to protein family HMM PF01578; match to protein family HMM TIGR01191; heme exporter protein CcmC complement(995346..996077) Methylococcus capsulatus str. Bath 3104166 YP_113433.1 CDS ccmB NC_002977.6 996082 996759 R identified by match to protein family HMM PF03379; match to protein family HMM TIGR01190; heme exporter protein CcmB complement(996082..996759) Methylococcus capsulatus str. Bath 3104298 YP_113434.1 CDS ccmA NC_002977.6 996935 997501 R identified by match to protein family HMM PF00005; match to protein family HMM TIGR01189; heme exporter protein CcmA complement(996935..997501) Methylococcus capsulatus str. Bath 3104815 YP_113435.1 CDS MCA0955 NC_002977.6 997607 998578 R hypothetical protein complement(997607..998578) Methylococcus capsulatus str. Bath 3104814 YP_113436.1 CDS MCA0956 NC_002977.6 998578 1000257 R identified by similarity to SP:Q50925; hydroxylamine oxidoreductase complement(998578..1000257) Methylococcus capsulatus str. Bath 3102164 YP_113437.1 CDS MCA0957 NC_002977.6 1000316 1001032 R identified by similarity to SP:P22037; match to protein family HMM PF02308; MgtC family protein complement(1000316..1001032) Methylococcus capsulatus str. Bath 3104075 YP_113438.1 CDS MCA0958 NC_002977.6 1001034 1001780 R hypothetical protein complement(1001034..1001780) Methylococcus capsulatus str. Bath 3104104 YP_113439.1 CDS MCA0959 NC_002977.6 1001839 1002489 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD-superfamily hydrolase complement(1001839..1002489) Methylococcus capsulatus str. Bath 3104103 YP_113440.1 CDS MCA0960 NC_002977.6 1002486 1002812 R identified by similarity to OMNI:NTL01BH3878; match to protein family HMM PF00903; glyoxalase complement(1002486..1002812) Methylococcus capsulatus str. Bath 3102866 YP_113441.1 CDS MCA0961 NC_002977.6 1002860 1004218 D catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 1002860..1004218 Methylococcus capsulatus str. Bath 3105083 YP_113442.1 CDS MCA0962 NC_002977.6 1004204 1005733 R hypothetical protein complement(1004204..1005733) Methylococcus capsulatus str. Bath 3105082 YP_113443.1 CDS MCA0963 NC_002977.6 1005733 1008012 R identified by match to protein family HMM PF01757; acyltransferase complement(1005733..1008012) Methylococcus capsulatus str. Bath 3104733 YP_113444.1 CDS msbA NC_002977.6 1007963 1009768 D identified by similarity to SP:P27299; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02203; lipid A export ATP-binding/permease MsbA 1007963..1009768 Methylococcus capsulatus str. Bath 3103805 YP_113445.1 CDS MCA0965 NC_002977.6 1009839 1010276 D hypothetical protein 1009839..1010276 Methylococcus capsulatus str. Bath 3103804 YP_113446.1 CDS sucC-1 NC_002977.6 1010404 1011564 D identified by similarity to SP:P07460; match to protein family HMM PF00549; match to protein family HMM PF02222; match to protein family HMM TIGR01016; succinyl-CoA synthetase subunit beta 1010404..1011564 Methylococcus capsulatus str. Bath 3103030 YP_113447.1 CDS sucD-1 NC_002977.6 1011561 1012433 D identified by similarity to SP:P07459; match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019; succinyl-CoA synthetase subunit alpha 1011561..1012433 Methylococcus capsulatus str. Bath 3103029 YP_113448.1 CDS MCA0969 NC_002977.6 1012471 1014090 D identified by similarity to SP:Q03638; match to protein family HMM PF00795; match to protein family HMM PF02540; match to protein family HMM TIGR00552; NAD(+) synthetase 1012471..1014090 Methylococcus capsulatus str. Bath 3105066 YP_113449.1 CDS MCA0970 NC_002977.6 1014060 1015004 R identified by similarity to OMNI:DRA0055; match to protein family HMM PF00294; carbohydrate kinase complement(1014060..1015004) Methylococcus capsulatus str. Bath 3104655 YP_113450.1 CDS comL NC_002977.6 1014977 1015837 R identified by similarity to SP:Q50985; match to protein family HMM PF03696; competence lipoprotein ComL complement(1014977..1015837) Methylococcus capsulatus str. Bath 3104654 YP_113451.1 CDS rluD NC_002977.6 1015882 1016886 D identified by similarity to SP:P33643; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase D 1015882..1016886 Methylococcus capsulatus str. Bath 3104912 YP_113452.1 CDS MCA0973 NC_002977.6 1016886 1017608 D identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein 1016886..1017608 Methylococcus capsulatus str. Bath 3102985 YP_113453.1 CDS MCA0974 NC_002977.6 1017632 1017946 D identified by similarity to GP:17429246; hypothetical protein 1017632..1017946 Methylococcus capsulatus str. Bath 3102472 YP_113454.1 CDS MCA0975 NC_002977.6 1018103 1018450 D ZIP zinc transporter domain-containing protein 1018103..1018450 Methylococcus capsulatus str. Bath 3104050 YP_113455.1 CDS MCA0976 NC_002977.6 1018437 1020317 R identified by similarity to SP:P30016; match to protein family HMM PF02705; potassium uptake protein, Kup system complement(1018437..1020317) Methylococcus capsulatus str. Bath 3102317 YP_113456.1 CDS MCA0977 NC_002977.6 1020393 1020710 R identified by match to protein family HMM PF00543; nitrogen regulatory protein P-II complement(1020393..1020710) Methylococcus capsulatus str. Bath 3102466 YP_113457.1 CDS MCA0978 NC_002977.6 1020707 1023772 R identified by match to protein family HMM TIGR00914; CzcA family heavy metal efflux protein complement(1020707..1023772) Methylococcus capsulatus str. Bath 3104445 YP_113458.1 CDS MCA0979 NC_002977.6 1023769 1024530 R identified by similarity to SP:P77239; transporter complement(1023769..1024530) Methylococcus capsulatus str. Bath 3104444 YP_113459.1 CDS MCA0980 NC_002977.6 1024687 1025787 R identified by match to protein family HMM PF01609; ISMca1, transposase complement(1024687..1025787) Methylococcus capsulatus str. Bath 3103553 YP_113460.1 CDS MCA0981 NC_002977.6 1025862 1026257 R lipoprotein complement(1025862..1026257) Methylococcus capsulatus str. Bath 3103123 YP_113461.1 CDS MCA0982 NC_002977.6 1026594 1027124 D identified by match to protein family HMM PF00011; HSP20 family protein 1026594..1027124 Methylococcus capsulatus str. Bath 3103122 YP_113462.1 CDS MCA0983 NC_002977.6 1027237 1027902 D identified by similarity to GP:19914454; hypothetical protein 1027237..1027902 Methylococcus capsulatus str. Bath 3102565 YP_113463.1 CDS MCA0984 NC_002977.6 1027920 1030352 D identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein 1027920..1030352 Methylococcus capsulatus str. Bath 3102564 YP_113464.1 CDS MCA0985 NC_002977.6 1030441 1033371 D identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein 1030441..1033371 Methylococcus capsulatus str. Bath 3102462 YP_113465.1 CDS MCA0987 NC_002977.6 1033988 1034308 R identified by similarity to GP:17942398; match to protein family HMM PF00355; Rieske 2Fe-2S family protein complement(1033988..1034308) Methylococcus capsulatus str. Bath 3103293 YP_113466.1 CDS MCA0988 NC_002977.6 1034322 1034702 R identified by similarity to SP:P77310; match to protein family HMM PF01592; match to protein family HMM TIGR01994; NifU family protein complement(1034322..1034702) Methylococcus capsulatus str. Bath 3103137 YP_113467.1 CDS csdB NC_002977.6 1034777 1036021 R identified by similarity to SP:P77444; match to protein family HMM PF00266; match to protein family HMM TIGR01979; selenocysteine lyase complement(1034777..1036021) Methylococcus capsulatus str. Bath 3103136 YP_113468.1 CDS sufD NC_002977.6 1036035 1037339 R identified by similarity to SP:P77689; match to protein family HMM PF01458; match to protein family HMM TIGR01981; FeS assembly protein SufD complement(1036035..1037339) Methylococcus capsulatus str. Bath 3102947 YP_113469.1 CDS sufC NC_002977.6 1037341 1038105 R identified by similarity to OMNI:NTL01ST1368; match to protein family HMM PF00005; match to protein family HMM TIGR01978; FeS assembly ATPase SufC complement(1037341..1038105) Methylococcus capsulatus str. Bath 3104973 YP_113470.1 CDS sufB NC_002977.6 1038135 1039580 R with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB complement(1038135..1039580) Methylococcus capsulatus str. Bath 3102973 YP_113471.1 CDS MCA0993 NC_002977.6 1039600 1040061 R identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; Rrf2 family protein complement(1039600..1040061) Methylococcus capsulatus str. Bath 3104983 YP_113472.1 CDS MCA0994 NC_002977.6 1040383 1041363 D identified by similarity to GP:17428164; hypothetical protein 1040383..1041363 Methylococcus capsulatus str. Bath 3104982 YP_113473.1 CDS MCA0996 NC_002977.6 1041536 1043185 D identified by similarity to SP:P23234; match to protein family HMM PF00205; match to protein family HMM PF02776; thiamine pyrophosphate enzyme family decarboxylase 1041536..1043185 Methylococcus capsulatus str. Bath 3104492 YP_113474.1 CDS MCA0997 NC_002977.6 1043235 1045166 R identified by similarity to OMNI:NTL01PA01213; hypothetical protein complement(1043235..1045166) Methylococcus capsulatus str. Bath 3103656 YP_113475.1 CDS MCA0998 NC_002977.6 1045206 1045982 R identified by similarity to SP:P76145; methyltransferase complement(1045206..1045982) Methylococcus capsulatus str. Bath 3103655 YP_113476.1 CDS MCA0999 NC_002977.6 1046085 1046975 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(1046085..1046975) Methylococcus capsulatus str. Bath 3102945 YP_113477.1 CDS MCA1000 NC_002977.6 1047066 1047854 D identified by similarity to GP:12323420; hypothetical protein 1047066..1047854 Methylococcus capsulatus str. Bath 3102495 YP_113478.1 CDS MCA1001 NC_002977.6 1048158 1048637 R identified by similarity to GP:17135359; hypothetical protein complement(1048158..1048637) Methylococcus capsulatus str. Bath 3102252 YP_113479.1 CDS MCA1002 NC_002977.6 1048642 1049298 R identified by match to protein family HMM PF02798; glutathione S-transferase complement(1048642..1049298) Methylococcus capsulatus str. Bath 3103761 YP_113480.1 CDS MCA1003 NC_002977.6 1049465 1051129 D identified by similarity to OMNI:NTL02ML0419; match to protein family HMM PF01471; hypothetical protein 1049465..1051129 Methylococcus capsulatus str. Bath 3103760 YP_113481.1 CDS MCA1004 NC_002977.6 1051131 1053848 R identified by similarity to SP:P37278; match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation transporter E1-E2 family ATPase complement(1051131..1053848) Methylococcus capsulatus str. Bath 3104925 YP_113482.1 CDS MCA1005 NC_002977.6 1054017 1055648 D identified by match to protein family HMM PF01384; phosphate transporter family protein 1054017..1055648 Methylococcus capsulatus str. Bath 3103466 YP_113483.1 CDS MCA1006 NC_002977.6 1055676 1058111 R identified by similarity to OMNI:NTL01AA00691; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01553; acyltransferase complement(1055676..1058111) Methylococcus capsulatus str. Bath 3103465 YP_113484.1 CDS MCA1007 NC_002977.6 1058093 1058782 D hypothetical protein 1058093..1058782 Methylococcus capsulatus str. Bath 3103649 YP_113485.1 CDS MCA1009 NC_002977.6 1059000 1059629 D identified by similarity to GP:18144241; hypothetical protein 1059000..1059629 Methylococcus capsulatus str. Bath 3102136 YP_113486.1 CDS MCA1010 NC_002977.6 1059680 1059967 R identified by similarity to GP:1666299; match to protein family HMM PF00076; RNA-binding protein complement(1059680..1059967) Methylococcus capsulatus str. Bath 3102652 YP_113487.1 CDS MCA1011 NC_002977.6 1060280 1061641 D identified by similarity to GP:17427549; match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase 1060280..1061641 Methylococcus capsulatus str. Bath 3102230 YP_113488.1 CDS MCA1012 NC_002977.6 1061889 1062902 D identified by similarity to OMNI:NT01MC2863; hypothetical protein 1061889..1062902 Methylococcus capsulatus str. Bath 3102229 YP_113489.1 CDS MCA1013 NC_002977.6 1063111 1065831 D identified by similarity to GP:17427439; hypothetical protein 1063111..1065831 Methylococcus capsulatus str. Bath 3104966 YP_113490.1 CDS MCA1014 NC_002977.6 1065975 1066673 D hypothetical protein 1065975..1066673 Methylococcus capsulatus str. Bath 3105030 YP_113491.1 CDS MCA1015 NC_002977.6 1066678 1067481 D hypothetical protein 1066678..1067481 Methylococcus capsulatus str. Bath 3105029 YP_113492.1 CDS MCA1016 NC_002977.6 1067515 1068624 D identified by similarity to SP:O05616; match to protein family HMM PF00355; dioxygenase, iron-sulfur subunit 1067515..1068624 Methylococcus capsulatus str. Bath 3103867 YP_113493.1 CDS MCA1017 NC_002977.6 1068621 1069607 D nucleoside diphosphate sugar epimerase 1068621..1069607 Methylococcus capsulatus str. Bath 3103139 YP_113494.1 CDS MCA1018 NC_002977.6 1069585 1071030 R identified by similarity to OMNI:NTL02SC5233; match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein complement(1069585..1071030) Methylococcus capsulatus str. Bath 3102402 YP_113495.1 CDS MCA1019 NC_002977.6 1071120 1072790 D identified by similarity to OMNI:NT01MC4376; hypothetical protein 1071120..1072790 Methylococcus capsulatus str. Bath 3102401 YP_113496.1 CDS MCA1020 NC_002977.6 1072938 1073417 D identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphoesterase 1072938..1073417 Methylococcus capsulatus str. Bath 3103844 YP_113497.1 CDS MCA1021 NC_002977.6 1073428 1074588 R identified by match to protein family HMM PF00155; aminotransferase complement(1073428..1074588) Methylococcus capsulatus str. Bath 3102051 YP_113498.1 CDS cysK NC_002977.6 1074776 1075708 D identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A 1074776..1075708 Methylococcus capsulatus str. Bath 3102050 YP_113499.1 CDS MCA1023 NC_002977.6 1076157 1076762 R identified by match to protein family HMM PF00578; AhpC/Tsa family antioxidant complement(1076157..1076762) Methylococcus capsulatus str. Bath 3104124 YP_113500.1 CDS MCA1024 NC_002977.6 1076918 1077364 R hypothetical protein complement(1076918..1077364) Methylococcus capsulatus str. Bath 3103641 YP_113501.1 CDS MCA1025 NC_002977.6 1077574 1077921 R hypothetical protein complement(1077574..1077921) Methylococcus capsulatus str. Bath 3103640 YP_113502.1 CDS MCA1026 NC_002977.6 1078093 1078530 R hypothetical protein complement(1078093..1078530) Methylococcus capsulatus str. Bath 3102751 YP_113503.1 CDS MCA1027 NC_002977.6 1078669 1080003 R identified by similarity to OMNI:CC1782; match to protein family HMM PF03929; hypothetical protein complement(1078669..1080003) Methylococcus capsulatus str. Bath 3103211 YP_113504.1 CDS MCA1028 NC_002977.6 1080010 1080969 R identified by similarity to SP:P08466; match to protein family HMM PF01223; endonuclease complement(1080010..1080969) Methylococcus capsulatus str. Bath 3103210 YP_113505.1 CDS MCA1029 NC_002977.6 1081064 1081699 R hypothetical protein complement(1081064..1081699) Methylococcus capsulatus str. Bath 3102502 YP_113506.1 CDS gluD NC_002977.6 1081877 1083001 R identified by similarity to SP:P80053; match to protein family HMM PF00208; match to protein family HMM PF02812; glutamate dehydrogenase complement(1081877..1083001) Methylococcus capsulatus str. Bath 3104180 YP_113507.1 CDS MCA1031 NC_002977.6 1083145 1083504 R ribosomal subunit interface protein complement(1083145..1083504) Methylococcus capsulatus str. Bath 3104179 YP_113508.1 CDS MCA1032 NC_002977.6 1083865 1086072 D identified by similarity to SP:P46837; match to protein family HMM PF00575; S1 RNA-binding domain-containing protein 1083865..1086072 Methylococcus capsulatus str. Bath 3102226 YP_113509.1 CDS MCA1033 NC_002977.6 1086083 1087093 R identified by similarity to OMNI:CC2083; hypothetical protein complement(1086083..1087093) Methylococcus capsulatus str. Bath 3103063 YP_113510.1 CDS MCA1034 NC_002977.6 1087438 1088244 D identified by similarity to OMNI:NMB0869; match to protein family HMM PF01564; hypothetical protein 1087438..1088244 Methylococcus capsulatus str. Bath 3104900 YP_113511.1 CDS MCA1036 NC_002977.6 1088628 1088798 D hypothetical protein 1088628..1088798 Methylococcus capsulatus str. Bath 3104899 YP_113512.1 CDS uvrD NC_002977.6 1088886 1091066 R unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II complement(1088886..1091066) Methylococcus capsulatus str. Bath 3103087 YP_113513.1 CDS MCA1038 NC_002977.6 1091241 1091504 D hypothetical protein 1091241..1091504 Methylococcus capsulatus str. Bath 3102393 YP_113514.1 CDS MCA1039 NC_002977.6 1091543 1091974 R identified by similarity to SP:P37147; match to protein family HMM PF04186; fxsA protein complement(1091543..1091974) Methylococcus capsulatus str. Bath 3102392 YP_113515.1 CDS MCA1040 NC_002977.6 1092022 1092345 D identified by similarity to SP:P36654; match to protein family HMM PF03091; divalent cation tolerance protein 1092022..1092345 Methylococcus capsulatus str. Bath 3102491 YP_113516.1 CDS MCA1041 NC_002977.6 1092330 1094567 D identified by similarity to SP:P36655; match to protein family HMM PF02683; DsbD family thiol:disulfide interchange protein 1092330..1094567 Methylococcus capsulatus str. Bath 3103676 YP_113517.1 CDS MCA1042 NC_002977.6 1094668 1095075 D thiol:disulfide interchange protein like protein 1094668..1095075 Methylococcus capsulatus str. Bath 3103675 YP_113518.1 CDS MCA1043 NC_002977.6 1095088 1095207 D hypothetical protein 1095088..1095207 Methylococcus capsulatus str. Bath 3104876 YP_113519.1 CDS aroQ NC_002977.6 1095186 1095632 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 1095186..1095632 Methylococcus capsulatus str. Bath 3105079 YP_113520.1 CDS accB NC_002977.6 1095633 1096088 D identified by similarity to SP:P02905; match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase, biotin carboxyl carrier protein 1095633..1096088 Methylococcus capsulatus str. Bath 3103850 YP_113521.1 CDS accC NC_002977.6 1096131 1097477 D identified by similarity to SP:P24182; match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514; acetyl-CoA carboxylase, biotin carboxylase 1096131..1097477 Methylococcus capsulatus str. Bath 3103849 YP_113522.1 CDS prmA NC_002977.6 1097482 1098363 D identified by similarity to SP:P28637; match to protein family HMM PF06325; match to protein family HMM TIGR00406; 50S ribosomal protein L11 methyltransferase 1097482..1098363 Methylococcus capsulatus str. Bath 3102179 YP_113523.1 CDS MCA1048 NC_002977.6 1098366 1099055 D identified by similarity to OMNI:NTL03PA04852; match to protein family HMM TIGR02098; hypothetical protein 1098366..1099055 Methylococcus capsulatus str. Bath 3102275 YP_113524.1 CDS MCA1049 NC_002977.6 1099135 1100334 D identified by similarity to OMNI:NTL03PA00355; hypothetical protein 1099135..1100334 Methylococcus capsulatus str. Bath 3102274 YP_113525.1 CDS hemK NC_002977.6 1100344 1101198 R identified by similarity to SP:P37186; match to protein family HMM TIGR00536; protein methyltransferase HemK complement(1100344..1101198) Methylococcus capsulatus str. Bath 3103659 YP_113526.1 CDS prfA NC_002977.6 1101203 1102285 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(1101203..1102285) Methylococcus capsulatus str. Bath 3103419 YP_113527.1 CDS hemA NC_002977.6 1102282 1103544 R identified by similarity to SP:P13580; match to protein family HMM PF00745; match to protein family HMM PF05200; match to protein family HMM PF05201; match to protein family HMM TIGR01035; glutamyl-tRNA reductase complement(1102282..1103544) Methylococcus capsulatus str. Bath 3103418 YP_113528.1 CDS MCA1053 NC_002977.6 1103820 1105580 D identified by match to protein family HMM PF00515; hypothetical protein 1103820..1105580 Methylococcus capsulatus str. Bath 3104049 YP_113529.1 CDS MCA1054 NC_002977.6 1105580 1106188 D identified by similarity to SP:P24208; match to protein family HMM PF03550; match to protein family HMM TIGR00548; molecular chaperone LolB 1105580..1106188 Methylococcus capsulatus str. Bath 3103717 YP_113530.1 CDS ispE NC_002977.6 1106161 1107036 D identified by similarity to SP:P24209; match to protein family HMM PF00288; match to protein family HMM TIGR00154; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1106161..1107036 Methylococcus capsulatus str. Bath 3104018 YP_113531.1 CDS prsA NC_002977.6 1107178 1108113 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1107178..1108113 Methylococcus capsulatus str. Bath 3104017 YP_113532.1 CDS ctc NC_002977.6 1108163 1108771 D identified by similarity to OMNI:NTL03PA04672; match to protein family HMM PF01386; match to protein family HMM TIGR00731; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 1108163..1108771 Methylococcus capsulatus str. Bath 3103773 YP_113533.1 CDS pth NC_002977.6 1108785 1109348 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1108785..1109348 Methylococcus capsulatus str. Bath 3102908 YP_113534.1 CDS tuf-1 NC_002977.6 1109771 1110961 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1109771..1110961 Methylococcus capsulatus str. Bath 3102907 YP_113535.1 CDS secE NC_002977.6 1111143 1111517 D identified by similarity to SP:P16920; match to protein family HMM PF00584; match to protein family HMM TIGR00964; Preprotein translocase subunit SecE 1111143..1111517 Methylococcus capsulatus str. Bath 3103854 YP_113536.1 CDS nusG NC_002977.6 1111530 1112063 D identified by similarity to SP:P16921; match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922; transcription antitermination protein NusG 1111530..1112063 Methylococcus capsulatus str. Bath 3105063 YP_113537.1 CDS rplK NC_002977.6 1112162 1112593 D identified by similarity to SP:P02409; match to protein family HMM PF00298; match to protein family HMM PF03946; match to protein family HMM TIGR01632; 50S ribosomal protein L11 1112162..1112593 Methylococcus capsulatus str. Bath 3105062 YP_113538.1 CDS rplA NC_002977.6 1112593 1113288 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 1112593..1113288 Methylococcus capsulatus str. Bath 3103500 YP_113539.1 CDS rplJ NC_002977.6 1113506 1114033 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 1113506..1114033 Methylococcus capsulatus str. Bath 3102656 YP_113540.1 CDS rplL NC_002977.6 1114073 1114450 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 1114073..1114450 Methylococcus capsulatus str. Bath 3102655 YP_113541.1 CDS rpoB NC_002977.6 1114712 1118788 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 1114712..1118788 Methylococcus capsulatus str. Bath 3102147 YP_113542.1 CDS rpoC NC_002977.6 1118854 1123056 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 1118854..1123056 Methylococcus capsulatus str. Bath 3102413 YP_113543.1 CDS MCA1068 NC_002977.6 1123222 1123842 D identified by similarity to SP:Q52369; match to protein family HMM PF00034; cytochrome c family protein 1123222..1123842 Methylococcus capsulatus str. Bath 3102676 YP_113544.1 CDS MCA1069 NC_002977.6 1123973 1124542 D identified by similarity to OMNI:NTL03PA00458; match to protein family HMM PF05618; hypothetical protein 1123973..1124542 Methylococcus capsulatus str. Bath 3102675 YP_113545.1 CDS MCA1070 NC_002977.6 1124569 1126101 D identified by similarity to OMNI:NTL03PA01768; hypothetical protein 1124569..1126101 Methylococcus capsulatus str. Bath 3103587 YP_113546.1 CDS MCA1071 NC_002977.6 1126125 1127066 D identified by similarity to OMNI:NTL03PA01767; match to protein family HMM TIGR02291; hypothetical protein 1126125..1127066 Methylococcus capsulatus str. Bath 3103921 YP_113547.1 CDS pstC NC_002977.6 1127390 1128769 D identified by similarity to OMNI:CC0290; match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease 1127390..1128769 Methylococcus capsulatus str. Bath 3103920 YP_113548.1 CDS pstA NC_002977.6 1128762 1130066 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease 1128762..1130066 Methylococcus capsulatus str. Bath 3103965 YP_113549.1 CDS pstB NC_002977.6 1130260 1131003 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1130260..1131003 Methylococcus capsulatus str. Bath 3104974 YP_113550.1 CDS phoU1 NC_002977.6 1131022 1131714 D identified by similarity to SP:P07656; match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system protein PhoU 1131022..1131714 Methylococcus capsulatus str. Bath 3105094 YP_113551.1 CDS MCA1076 NC_002977.6 1131896 1132987 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1131896..1132987 Methylococcus capsulatus str. Bath 3103278 YP_113552.1 CDS thiG NC_002977.6 1132992 1133972 D fusion of thiS and thiG; functions in thiamine (vitamin B1) biosynthesis; bifunctional sulfur carrier protein/thiazole synthase 1132992..1133972 Methylococcus capsulatus str. Bath 3103277 YP_113553.1 CDS cah NC_002977.6 1136253 1137047 D identified by similarity to SP:O52538; match to protein family HMM PF00194; carbonic anhydrase 1136253..1137047 Methylococcus capsulatus str. Bath 3104825 YP_113554.1 CDS MCA1081 NC_002977.6 1136980 1137315 R identified by similarity to GP:2293232; hypothetical protein complement(1136980..1137315) Methylococcus capsulatus str. Bath 3102861 YP_113555.1 CDS MCA1082 NC_002977.6 1137464 1137802 R hypothetical protein complement(1137464..1137802) Methylococcus capsulatus str. Bath 3104540 YP_113556.1 CDS MCA1083 NC_002977.6 1138045 1139916 D hypothetical protein 1138045..1139916 Methylococcus capsulatus str. Bath 3104539 YP_113557.1 CDS MCA1084 NC_002977.6 1139977 1141410 R hypothetical protein complement(1139977..1141410) Methylococcus capsulatus str. Bath 3104499 YP_113558.1 CDS MCA1085 NC_002977.6 1141372 1142277 D identified by similarity to OMNI:NTL03PA01873; hypothetical protein 1141372..1142277 Methylococcus capsulatus str. Bath 3104573 YP_113559.1 CDS MCA1086 NC_002977.6 1142288 1142623 D hypothetical protein 1142288..1142623 Methylococcus capsulatus str. Bath 3102297 YP_113560.1 CDS MCA1087 NC_002977.6 1142625 1143095 D hypothetical protein 1142625..1143095 Methylococcus capsulatus str. Bath 3102296 YP_113561.1 CDS MCA1090 NC_002977.6 1145041 1146141 D identified by match to protein family HMM PF01609; ISMca1, transposase 1145041..1146141 Methylococcus capsulatus str. Bath 3104796 YP_113562.1 CDS MCA1091 NC_002977.6 1146361 1147038 D hypothetical protein 1146361..1147038 Methylococcus capsulatus str. Bath 3102247 YP_113563.1 CDS MCA1092 NC_002977.6 1147288 1148493 R identified by similarity to SP:P46323; match to protein family HMM PF00994; molybdenum cofactor biosynthesis protein complement(1147288..1148493) Methylococcus capsulatus str. Bath 3104146 YP_113564.1 CDS MCA1093 NC_002977.6 1148490 1149431 R identified by similarity to SP:O27435; match to protein family HMM PF03547; hypothetical protein complement(1148490..1149431) Methylococcus capsulatus str. Bath 3104145 YP_113565.1 CDS pyrF NC_002977.6 1149587 1150315 D identified by similarity to SP:Q59654; match to protein family HMM PF00215; match to protein family HMM TIGR01740; orotidine 5'-phosphate decarboxylase 1149587..1150315 Methylococcus capsulatus str. Bath 3104569 YP_113566.1 CDS MCA1095 NC_002977.6 1150544 1151104 D identified by similarity to OMNI:NTL03PA01548; hypothetical protein 1150544..1151104 Methylococcus capsulatus str. Bath 3104568 YP_113567.1 CDS MCA1096 NC_002977.6 1151122 1152063 D identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54-dependent transcriptional regulator 1151122..1152063 Methylococcus capsulatus str. Bath 3102046 YP_113568.1 CDS feoB NC_002977.6 1152127 1153914 R identified by match to protein family HMM PF02421; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; match to protein family HMM TIGR00650; ferrous iron transport protein B complement(1152127..1153914) Methylococcus capsulatus str. Bath 3104463 YP_113569.1 CDS feoA NC_002977.6 1153914 1154156 R identified by similarity to OMNI:DR1220; match to protein family HMM PF04023; ferrous iron transport protein A complement(1153914..1154156) Methylococcus capsulatus str. Bath 3104462 YP_113570.1 CDS argG NC_002977.6 1154290 1155516 R catalyzes ATP + L-citrulline + L-aspartate = AMP + diphosphate + (N(omega)-L-arginino)succinate; argininosuccinate synthase complement(1154290..1155516) Methylococcus capsulatus str. Bath 3102446 YP_113571.1 CDS MCA1101 NC_002977.6 1155898 1157328 D identified by match to protein family HMM PF00394; multicopper oxidase 1155898..1157328 Methylococcus capsulatus str. Bath 3103940 YP_113572.1 CDS MCA1102 NC_002977.6 1157365 1158564 R identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator complement(1157365..1158564) Methylococcus capsulatus str. Bath 3103939 YP_113573.1 CDS MCA1103 NC_002977.6 1158847 1159566 D identified by match to protein family HMM PF00753; metallo-beta-lactamase 1158847..1159566 Methylococcus capsulatus str. Bath 3103442 YP_113574.1 CDS MCA1104 NC_002977.6 1159563 1160468 D identified by similarity to GP:17133040; match to protein family HMM PF01925; hypothetical protein 1159563..1160468 Methylococcus capsulatus str. Bath 3103441 YP_113575.1 CDS cydA NC_002977.6 1160863 1162440 D identified by similarity to SP:Q09049; match to protein family HMM PF01654; cytochrome d ubiquinol oxidase subunit I 1160863..1162440 Methylococcus capsulatus str. Bath 3104501 YP_113576.1 CDS cydB NC_002977.6 1162460 1163596 D identified by similarity to SP:P11027; match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome d ubiquinol oxidase subunit II 1162460..1163596 Methylococcus capsulatus str. Bath 3104832 YP_113577.1 CDS ybgT NC_002977.6 1163628 1163750 D identified by match to protein family HMM TIGR02106; cyd operon protein YbgT 1163628..1163750 Methylococcus capsulatus str. Bath 3104831 YP_113578.1 CDS MCA1108 NC_002977.6 1163835 1164110 D identified by similarity to OMNI:NTL03PA02658; hypothetical protein 1163835..1164110 Methylococcus capsulatus str. Bath 3104621 YP_113579.1 CDS MCA1109 NC_002977.6 1164359 1164784 D identified by match to protein family HMM PF03171; 2OG-Fe(II) oxygenase 1164359..1164784 Methylococcus capsulatus str. Bath 3104809 YP_113580.1 CDS mdoD NC_002977.6 1164796 1166376 R involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D complement(1164796..1166376) Methylococcus capsulatus str. Bath 3103343 YP_113581.1 CDS MCA1111 NC_002977.6 1166486 1167280 R identified by similarity to GP:17429447; match to protein family HMM PF01925; hypothetical protein complement(1166486..1167280) Methylococcus capsulatus str. Bath 3103342 YP_113582.1 CDS MCA1112 NC_002977.6 1167489 1168169 D hypothetical protein 1167489..1168169 Methylococcus capsulatus str. Bath 3104596 YP_113583.1 CDS hisC-1 NC_002977.6 1168166 1169239 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(1168166..1169239) Methylococcus capsulatus str. Bath 3103953 YP_113584.1 CDS xpsE NC_002977.6 1169534 1171291 D identified by similarity to SP:P31742; match to protein family HMM PF00437; match to protein family HMM PF05157; general secretion pathway protein E 1169534..1171291 Methylococcus capsulatus str. Bath 3103952 YP_113585.1 CDS xpsF NC_002977.6 1171467 1172561 D identified by similarity to SP:P31744; match to protein family HMM PF00482; general secretion pathway protein F 1171467..1172561 Methylococcus capsulatus str. Bath 3104857 YP_113586.1 CDS gspG NC_002977.6 1172598 1173029 D identified by similarity to SP:Q00514; match to protein family HMM TIGR01710; general secretion pathway protein G 1172598..1173029 Methylococcus capsulatus str. Bath 3104646 YP_113587.1 CDS xpsH NC_002977.6 1173073 1173498 D identified by similarity to SP:P31736; general secretion pathway protein H 1173073..1173498 Methylococcus capsulatus str. Bath 3104645 YP_113588.1 CDS xpsI NC_002977.6 1173554 1173973 D identified by similarity to SP:P31738; general secretion protein I 1173554..1173973 Methylococcus capsulatus str. Bath 3104766 YP_113589.1 CDS xpsJ NC_002977.6 1173976 1174578 D identified by similarity to SP:P31740; general secretory pathway protein J 1173976..1174578 Methylococcus capsulatus str. Bath 3104727 YP_113590.1 CDS MCA1120 NC_002977.6 1174815 1175753 D general secretion pathway protein K 1174815..1175753 Methylococcus capsulatus str. Bath 3103960 YP_113591.1 CDS MCA1121 NC_002977.6 1175785 1176903 D identified by similarity to SP:P34027; match to protein family HMM PF05137; general secretion protein I 1175785..1176903 Methylococcus capsulatus str. Bath 3103959 YP_113592.1 CDS MCA1122 NC_002977.6 1176854 1177465 D identified by similarity to GP:496290; general secretion pathway protein 1176854..1177465 Methylococcus capsulatus str. Bath 3104782 YP_113593.1 CDS gspD NC_002977.6 1178358 1180613 D identified by similarity to SP:P45758; match to protein family HMM PF00263; match to protein family HMM PF03958; general secretion pathway protein D 1178358..1180613 Methylococcus capsulatus str. Bath 3102943 YP_113594.1 CDS comF NC_002977.6 1180635 1181336 R identified by similarity to SP:P31773; competence protein F complement(1180635..1181336) Methylococcus capsulatus str. Bath 3102942 YP_113595.1 CDS bioB NC_002977.6 1181717 1182718 D identified by similarity to SP:P12996; match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433; biotin synthetase 1181717..1182718 Methylococcus capsulatus str. Bath 3103623 YP_113596.1 CDS bioF NC_002977.6 1182724 1183887 D catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 1182724..1183887 Methylococcus capsulatus str. Bath 3104623 YP_113597.1 CDS MCA1127 NC_002977.6 1183888 1184652 D identified by similarity to SP:P13001; match to protein family HMM PF00561; match to protein family HMM TIGR01738; BioH protein 1183888..1184652 Methylococcus capsulatus str. Bath 3104622 YP_113598.1 CDS bioC NC_002977.6 1184630 1185457 D identified by similarity to SP:O06898; match to protein family HMM TIGR02072; biotin synthesis protein BioC 1184630..1185457 Methylococcus capsulatus str. Bath 3102671 YP_113599.1 CDS bioD NC_002977.6 1185467 1186153 D identified by similarity to SP:P13000; match to protein family HMM PF01656; match to protein family HMM TIGR00347; dethiobiotin synthetase 1185467..1186153 Methylococcus capsulatus str. Bath 3102109 YP_113600.1 CDS MCA1130 NC_002977.6 1186649 1188007 D identified by match to protein family HMM PF00753; match to protein family HMM PF07521; metallo-beta-lactamase 1186649..1188007 Methylococcus capsulatus str. Bath 3102108 YP_113601.1 CDS MCA1131 NC_002977.6 1188013 1188780 R identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; hypothetical protein complement(1188013..1188780) Methylococcus capsulatus str. Bath 3103493 YP_113602.1 CDS MCA1132 NC_002977.6 1188873 1190369 D identified by similarity to GP:17131502; hypothetical protein 1188873..1190369 Methylococcus capsulatus str. Bath 3103873 YP_113603.1 CDS MCA1133 NC_002977.6 1190416 1191633 R identified by similarity to SP:P24235; match to protein family HMM PF00953; undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase complement(1190416..1191633) Methylococcus capsulatus str. Bath 3103872 YP_113604.1 CDS MCA1134 NC_002977.6 1191745 1192539 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01458; match to protein family HMM TIGR01460; HAD superfamily hydrolase complement(1191745..1192539) Methylococcus capsulatus str. Bath 3102151 YP_113605.1 CDS MCA1135 NC_002977.6 1192526 1192846 R hypothetical protein complement(1192526..1192846) Methylococcus capsulatus str. Bath 3103460 YP_113606.1 CDS MCA1136 NC_002977.6 1192914 1193201 D hypothetical protein 1192914..1193201 Methylococcus capsulatus str. Bath 3103191 YP_113607.1 CDS MCA1137 NC_002977.6 1193214 1193723 R identified by similarity to GP:19918502; match to protein family HMM PF01058; hydrogenase subunit complement(1193214..1193723) Methylococcus capsulatus str. Bath 3103190 YP_113608.1 CDS MCA1138 NC_002977.6 1193735 1195318 R identified by similarity to SP:P77329; match to protein family HMM PF00329; match to protein family HMM PF00346; hydrogenase subunit complement(1193735..1195318) Methylococcus capsulatus str. Bath 3103124 YP_113609.1 CDS MCA1139 NC_002977.6 1195354 1196820 R Catalyzes the transfer of electrons from NADH to ubiquinone; hydrogenase 4 subunit F complement(1195354..1196820) Methylococcus capsulatus str. Bath 3104658 YP_113610.1 CDS MCA1140 NC_002977.6 1196817 1197494 R identified by similarity to SP:P77524; hydrogenase subunit complement(1196817..1197494) Methylococcus capsulatus str. Bath 3104657 YP_113611.1 CDS MCA1141 NC_002977.6 1197500 1198438 R identified by similarity to GP:12744950; match to protein family HMM PF00146; hydrogenase subunit complement(1197500..1198438) Methylococcus capsulatus str. Bath 3102497 YP_113612.1 CDS MCA1142 NC_002977.6 1198438 1200684 R Catalyzes the transfer of electrons from NADH to ubiquinone; hydrogenase 4 subunit B complement(1198438..1200684) Methylococcus capsulatus str. Bath 3102538 YP_113613.1 CDS MCA1143 NC_002977.6 1200790 1201359 D identified by similarity to GP:17132082; match to protein family HMM PF05685; hypothetical protein 1200790..1201359 Methylococcus capsulatus str. Bath 3102537 YP_113614.1 CDS MCA1144 NC_002977.6 1201356 1201823 D hypothetical protein 1201356..1201823 Methylococcus capsulatus str. Bath 3102836 YP_113615.1 CDS MCA1145 NC_002977.6 1202007 1202387 D identified by similarity to SP:O59256; hypothetical protein 1202007..1202387 Methylococcus capsulatus str. Bath 3102648 YP_113616.1 CDS gmd NC_002977.6 1202384 1203502 D identified by similarity to SP:P32054; match to protein family HMM TIGR01472; GDP-mannose 4,6-dehydratase 1202384..1203502 Methylococcus capsulatus str. Bath 3102647 YP_113617.1 CDS fcl NC_002977.6 1203509 1204477 D identified by similarity to SP:P32055; GDP-L-fucose synthetase 1203509..1204477 Methylococcus capsulatus str. Bath 3103665 YP_113618.1 CDS MCA1149 NC_002977.6 1204961 1205455 D hypothetical protein 1204961..1205455 Methylococcus capsulatus str. Bath 3102569 YP_113619.1 CDS MCA1150 NC_002977.6 1205627 1207042 D hypothetical protein 1205627..1207042 Methylococcus capsulatus str. Bath 3102568 YP_113620.1 CDS MCA1151 NC_002977.6 1207046 1207705 D hypothetical protein 1207046..1207705 Methylococcus capsulatus str. Bath 3105051 YP_113621.1 CDS MCA1152 NC_002977.6 1207794 1208579 D identified by similarity to GP:14028308; match to protein family HMM TIGR01444; hypothetical protein 1207794..1208579 Methylococcus capsulatus str. Bath 3103440 YP_113622.1 CDS MCA1153 NC_002977.6 1208576 1209706 D identified by match to protein family HMM PF00534; glycosyl transferase family protein 1208576..1209706 Methylococcus capsulatus str. Bath 3103297 YP_113623.1 CDS MCA1154 NC_002977.6 1209724 1210431 D hypothetical protein 1209724..1210431 Methylococcus capsulatus str. Bath 3103157 YP_113624.1 CDS MCA1155 NC_002977.6 1210461 1211366 D identified by match to protein family HMM TIGR01444; FkbM family methyltransferase 1210461..1211366 Methylococcus capsulatus str. Bath 3104811 YP_113625.1 CDS MCA1156 NC_002977.6 1211354 1212868 D hypothetical protein 1211354..1212868 Methylococcus capsulatus str. Bath 3104810 YP_113626.1 CDS MCA1157 NC_002977.6 1212897 1213658 D identified by match to protein family HMM TIGR01444; FkbM family methyltransferase 1212897..1213658 Methylococcus capsulatus str. Bath 3102106 YP_113627.1 CDS MCA1158 NC_002977.6 1213675 1214529 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 1213675..1214529 Methylococcus capsulatus str. Bath 3102536 YP_113628.1 CDS MCA1159 NC_002977.6 1214533 1215573 D identified by match to protein family HMM PF00534; glycosyl transferase family protein 1214533..1215573 Methylococcus capsulatus str. Bath 3102535 YP_113629.1 CDS MCA1160 NC_002977.6 1215582 1216733 D identified by match to protein family HMM PF00534; glycosyl transferase family protein 1215582..1216733 Methylococcus capsulatus str. Bath 3102826 YP_113630.1 CDS MCA1161 NC_002977.6 1217070 1218281 D hypothetical protein 1217070..1218281 Methylococcus capsulatus str. Bath 3102102 YP_113631.1 CDS MCA1162 NC_002977.6 1218278 1219741 D identified by similarity to GP:1245347; match to protein family HMM PF03062; alginate O-acetyltransferase 1218278..1219741 Methylococcus capsulatus str. Bath 3103888 YP_113632.1 CDS MCA1163 NC_002977.6 1219794 1221548 D identified by similarity to SP:P55474; match to protein family HMM PF02543; nodulation protein nolNO 1219794..1221548 Methylococcus capsulatus str. Bath 3102682 YP_113633.1 CDS MCA1164 NC_002977.6 1221559 1222011 D methyltransferase domain-containing protein 1221559..1222011 Methylococcus capsulatus str. Bath 3104236 YP_113634.1 CDS MCA1165 NC_002977.6 1222207 1223169 D identified by match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase 1222207..1223169 Methylococcus capsulatus str. Bath 3104235 YP_113635.1 CDS MCA1166 NC_002977.6 1223169 1224062 D identified by similarity to GP:17132272; match to protein family HMM PF00535; glycosyl transferase group 2 family protein 1223169..1224062 Methylococcus capsulatus str. Bath 3104683 YP_113636.1 CDS MCA1168 NC_002977.6 1224479 1225693 D identified by similarity to SP:P32057; match to protein family HMM PF00534; colanic acid biosynthesis glycosyl transferase 1224479..1225693 Methylococcus capsulatus str. Bath 3104174 YP_113637.1 CDS MCA1171 NC_002977.6 1226496 1226954 D hypothetical protein 1226496..1226954 Methylococcus capsulatus str. Bath 3104173 YP_113638.1 CDS MCA1172 NC_002977.6 1226932 1227111 R hypothetical protein complement(1226932..1227111) Methylococcus capsulatus str. Bath 3104494 YP_113639.1 CDS MCA1173 NC_002977.6 1227095 1228468 D identified by similarity to OMNI:VC0931; match to protein family HMM PF04932; hypothetical protein 1227095..1228468 Methylococcus capsulatus str. Bath 3103013 YP_113640.1 CDS MCA1174 NC_002977.6 1228559 1229992 D identified by similarity to OMNI:VC0935; hypothetical protein 1228559..1229992 Methylococcus capsulatus str. Bath 3103012 YP_113641.1 CDS MCA1175 NC_002977.6 1230177 1230635 D identified by match to protein family HMM PF02563; polysaccharide biosynthesis/export protein 1230177..1230635 Methylococcus capsulatus str. Bath 3102418 YP_113642.1 CDS MCA1176 NC_002977.6 1230671 1231624 D This gene is interrupted by an IS element.identified by similarity to OMNI:NTL01SS00315; match to protein family HMM PF02706; exopolysaccharide export protein , interruption-N 1230671..1231624 Methylococcus capsulatus str. Bath 3105009 YP_113643.1 CDS MCA1177 NC_002977.6 1231615 1232715 R identified by match to protein family HMM PF01609; ISMca1, transposase complement(1231615..1232715) Methylococcus capsulatus str. Bath 3102251 YP_113644.1 CDS MCA1178 NC_002977.6 1232830 1234413 D This gene is interrupted by an IS element.identified by similarity to SP:Q45409; exopolysaccharide export protein , interruption-C 1232830..1234413 Methylococcus capsulatus str. Bath 3105008 YP_113645.1 CDS MCA1179 NC_002977.6 1234480 1235205 D identified by similarity to GP:12006001; capsular polysaccharide biosynthesis protein 1234480..1235205 Methylococcus capsulatus str. Bath 3104526 YP_113646.1 CDS cysA NC_002977.6 1235941 1236987 R identified by similarity to SP:P14788; match to protein family HMM PF00005; match to protein family HMM TIGR00968; sulfate ABC transporter ATP-binding protein complement(1235941..1236987) Methylococcus capsulatus str. Bath 3104525 YP_113647.1 CDS cysW NC_002977.6 1237006 1237893 R identified by similarity to SP:P16702; match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140; sulfate ABC transporter permease complement(1237006..1237893) Methylococcus capsulatus str. Bath 3102575 YP_113648.1 CDS cysT NC_002977.6 1237920 1238756 R identified by similarity to SP:P16701; match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139; sulfate ABC transporter permease complement(1237920..1238756) Methylococcus capsulatus str. Bath 3103196 YP_113649.1 CDS MCA1184 NC_002977.6 1239209 1240606 D identified by similarity to GP:9478255; hypothetical protein 1239209..1240606 Methylococcus capsulatus str. Bath 3103195 YP_113650.1 CDS MCA1185 NC_002977.6 1240773 1241417 R identified by similarity to OMNI:NTL03PA02482; match to protein family HMM PF00034; cytochrome c family protein complement(1240773..1241417) Methylococcus capsulatus str. Bath 3103151 YP_113651.1 CDS MCA1186 NC_002977.6 1241427 1242632 R hypothetical protein complement(1241427..1242632) Methylococcus capsulatus str. Bath 3104965 YP_113652.1 CDS MCA1187 NC_002977.6 1242646 1244013 R identified by match to protein family HMM PF00034; cytochrome c family protein complement(1242646..1244013) Methylococcus capsulatus str. Bath 3104074 YP_113653.1 CDS hppA NC_002977.6 1244380 1246311 D pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 1244380..1246311 Methylococcus capsulatus str. Bath 3102560 YP_113654.1 CDS MCA1189 NC_002977.6 1246343 1247098 D identified by similarity to GP:13620194; hypothetical protein 1246343..1247098 Methylococcus capsulatus str. Bath 3103360 YP_113655.1 CDS MCA1190 NC_002977.6 1247103 1248005 D hypothetical protein 1247103..1248005 Methylococcus capsulatus str. Bath 3103359 YP_113656.1 CDS MCA1191 NC_002977.6 1247984 1248646 D identified by match to protein family HMM PF02630; SCO1/SenC family protein 1247984..1248646 Methylococcus capsulatus str. Bath 3103150 YP_113657.1 CDS MCA1192 NC_002977.6 1248643 1249068 D identified by similarity to OMNI:DR1885; hypothetical protein 1248643..1249068 Methylococcus capsulatus str. Bath 3102792 YP_113658.1 CDS MCA1193 NC_002977.6 1249598 1251442 R identified by similarity to SP:P40983; hypothetical protein complement(1249598..1251442) Methylococcus capsulatus str. Bath 3102791 YP_113659.1 CDS mmoX NC_002977.6 1252141 1253724 D identified by similarity to SP:P22869; match to protein family HMM PF02332; methane monooxygenase subunit A, alpha chain 1252141..1253724 Methylococcus capsulatus str. Bath 3104807 YP_113660.1 CDS mmoY NC_002977.6 1253805 1254974 D identified by similarity to SP:P18798; match to protein family HMM PF02332; methane monooxygenase subunit A, beta chain 1253805..1254974 Methylococcus capsulatus str. Bath 3103426 YP_113661.1 CDS mmoB NC_002977.6 1254991 1255416 D identified by similarity to SP:P18797; match to protein family HMM PF02406; methane monooxygenase subunit B 1254991..1255416 Methylococcus capsulatus str. Bath 3103283 YP_113662.1 CDS MCA1197 NC_002977.6 1255502 1256602 D identified by match to protein family HMM PF01609; ISMca1, transposase 1255502..1256602 Methylococcus capsulatus str. Bath 3103282 YP_113663.1 CDS mmoZ NC_002977.6 1256767 1257279 D identified by similarity to SP:P11987; match to protein family HMM PF02964; methane monooxygenase subunit A, gamma chain 1256767..1257279 Methylococcus capsulatus str. Bath 3102570 YP_113664.1 CDS mmoD NC_002977.6 1257434 1257745 D methane monooxygenase, D subunit 1257434..1257745 Methylococcus capsulatus str. Bath 3103264 YP_113665.1 CDS mmoC NC_002977.6 1257758 1258804 D identified by similarity to SP:P22868; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; methane monooxygenase subunit C 1257758..1258804 Methylococcus capsulatus str. Bath 3103263 YP_113666.1 CDS MCA1201 NC_002977.6 1258819 1259139 D hypothetical protein 1258819..1259139 Methylococcus capsulatus str. Bath 3104812 YP_113667.1 CDS groEL-2 NC_002977.6 1259157 1260836 D identified by similarity to SP:P45746; match to protein family HMM PF00118; chaperonin, 60 kDa subunit 1259157..1260836 Methylococcus capsulatus str. Bath 3102984 YP_113668.1 CDS MCA1203 NC_002977.6 1260869 1262773 R identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254; response regulator complement(1260869..1262773) Methylococcus capsulatus str. Bath 3102714 YP_113669.1 CDS MCA1204 NC_002977.6 1262770 1266303 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator complement(1262770..1266303) Methylococcus capsulatus str. Bath 3102090 YP_113670.1 CDS MCA1205 NC_002977.6 1266748 1268493 D identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator 1266748..1268493 Methylococcus capsulatus str. Bath 3102089 YP_113671.1 CDS MCA1207 NC_002977.6 1269203 1269514 R identified by similarity to SP:P36768; match to protein family HMM PF06865; hypothetical protein complement(1269203..1269514) Methylococcus capsulatus str. Bath 3103664 YP_113672.1 CDS MCA1208 NC_002977.6 1269579 1270214 R identified by similarity to SP:P32174; match to protein family HMM TIGR01583; formate dehydrogenase subunit gamma complement(1269579..1270214) Methylococcus capsulatus str. Bath 3104649 YP_113673.1 CDS MCA1209 NC_002977.6 1270211 1271083 R identified by similarity to SP:P32175; match to protein family HMM PF00037; match to protein family HMM TIGR01582; formate dehydrogenase, iron-sulfur subunit complement(1270211..1271083) Methylococcus capsulatus str. Bath 3104648 YP_113674.1 CDS MCA1210 NC_002977.6 1271086 1274286 R identified by similarity to SP:P32176; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR01553; formate dehydrogenase subunit alpha complement(1271086..1274286) Methylococcus capsulatus str. Bath 3103144 YP_113675.1 CDS pcm-1 NC_002977.6 1274479 1275138 D identified by similarity to SP:P24206; match to protein family HMM PF01135; match to protein family HMM TIGR00080; protein-L-isoaspartate O-methyltransferase 1274479..1275138 Methylococcus capsulatus str. Bath 3102813 YP_113676.1 CDS MCA1212 NC_002977.6 1275140 1276225 D catalyzes the conversion of terminal3'-phosphate of RNA to the 2',3'-cyclicphosphodiester; RNA 3'-terminal-phosphate cyclase 1275140..1276225 Methylococcus capsulatus str. Bath 3102796 YP_113677.1 CDS MCA1213 NC_002977.6 1276212 1277936 D identified by similarity to GP:19914532; match to protein family HMM PF00633; match to protein family HMM PF02231; match to protein family HMM PF02811; hypothetical protein 1276212..1277936 Methylococcus capsulatus str. Bath 3102795 YP_113678.1 CDS MCA1214 NC_002977.6 1278054 1279883 D identified by similarity to OMNI:NMB0264; match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 1278054..1279883 Methylococcus capsulatus str. Bath 3104674 YP_113679.1 CDS MCA1215 NC_002977.6 1280209 1280481 D hypothetical protein 1280209..1280481 Methylococcus capsulatus str. Bath 3104355 YP_113680.1 CDS MCA1216 NC_002977.6 1280734 1281258 D hypothetical protein 1280734..1281258 Methylococcus capsulatus str. Bath 3104354 YP_113681.1 CDS MCA1217 NC_002977.6 1281500 1284019 D identified by match to protein family HMM PF07504; metalloprotease 1281500..1284019 Methylococcus capsulatus str. Bath 3102114 YP_113683.1 CDS MCA1219 NC_002977.6 1284430 1285665 R identified by match to protein family HMM PF00872; ISMca5, transposase complement(1284430..1285665) Methylococcus capsulatus str. Bath 3103400 YP_113684.1 CDS MCA1220 NC_002977.6 1286056 1286802 D identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 1286056..1286802 Methylococcus capsulatus str. Bath 3104302 YP_113685.1 CDS ruvC NC_002977.6 1286812 1287309 D identified by similarity to SP:P24239; match to protein family HMM PF02075; match to protein family HMM TIGR00228; crossover junction endodeoxyribonuclease RuvC 1286812..1287309 Methylococcus capsulatus str. Bath 3104777 YP_113686.1 CDS ruvA NC_002977.6 1287306 1287911 D identified by similarity to SP:P08576; match to protein family HMM PF01330; match to protein family HMM PF07499; match to protein family HMM TIGR00084; Holliday junction DNA helicase RuvA 1287306..1287911 Methylococcus capsulatus str. Bath 3102545 YP_113687.1 CDS ruvB NC_002977.6 1287923 1288960 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1287923..1288960 Methylococcus capsulatus str. Bath 3102544 YP_113688.1 CDS MCA1224 NC_002977.6 1288929 1289360 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; thioesterase 1288929..1289360 Methylococcus capsulatus str. Bath 3103326 YP_113689.1 CDS MCA1225 NC_002977.6 1290091 1292472 R hypothetical protein complement(1290091..1292472) Methylococcus capsulatus str. Bath 3102366 YP_113690.1 CDS tolQ NC_002977.6 1292731 1293408 D identified by similarity to SP:P05828; match to protein family HMM PF01618; tolQ protein 1292731..1293408 Methylococcus capsulatus str. Bath 3102365 YP_113691.1 CDS tolR NC_002977.6 1293405 1293845 D identified by similarity to SP:P50599; match to protein family HMM PF02472; tolR protein 1293405..1293845 Methylococcus capsulatus str. Bath 3104753 YP_113692.1 CDS MCA1228 NC_002977.6 1293845 1295248 D identified by similarity to SP:P50600; match to protein family HMM PF06519; match to protein family HMM TIGR01352; TolA protein 1293845..1295248 Methylococcus capsulatus str. Bath 3104910 YP_113693.1 CDS tolB NC_002977.6 1295268 1296542 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1295268..1296542 Methylococcus capsulatus str. Bath 3103943 YP_113694.1 CDS MCA1230 NC_002977.6 1296548 1297195 D identified by match to protein family HMM PF00691; OmpA family protein 1296548..1297195 Methylococcus capsulatus str. Bath 3102774 YP_113695.1 CDS MCA1231 NC_002977.6 1297200 1298057 D identified by similarity to OMNI:NTL03PA00975; hypothetical protein 1297200..1298057 Methylococcus capsulatus str. Bath 3102773 YP_113696.1 CDS MCA1232 NC_002977.6 1298063 1298710 D identified by match to protein family HMM PF04055; radical activating enzyme family protein 1298063..1298710 Methylococcus capsulatus str. Bath 3104440 YP_113697.1 CDS MCA1233 NC_002977.6 1298710 1299381 D identified by similarity to GP:5514781; match to protein family HMM PF06508; match to protein family HMM TIGR00364; exoenzyme S synthesis protein B 1298710..1299381 Methylococcus capsulatus str. Bath 3104169 YP_113698.1 CDS gltX NC_002977.6 1299444 1300850 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1299444..1300850 Methylococcus capsulatus str. Bath 3104168 YP_113699.1 CDS MCA1235 NC_002977.6 1301080 1301298 R hypothetical protein complement(1301080..1301298) Methylococcus capsulatus str. Bath 3103707 YP_113700.1 CDS MCA1237 NC_002977.6 1302192 1304330 R identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein complement(1302192..1304330) Methylococcus capsulatus str. Bath 3103614 YP_113701.1 CDS MCA1238 NC_002977.6 1304430 1313096 R identified by similarity to GP:24575128; match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01590; match to protein family HMM PF02801; polyketide synthase complement(1304430..1313096) Methylococcus capsulatus str. Bath 3102766 YP_113702.1 CDS MCA1239 NC_002977.6 1313343 1316441 R identified by match to protein family HMM TIGR00914; CzcA family heavy metal efflux protein complement(1313343..1316441) Methylococcus capsulatus str. Bath 3102937 YP_113703.1 CDS ubiX NC_002977.6 1316654 1317247 D identified by similarity to SP:P09550; match to protein family HMM PF02441; match to protein family HMM TIGR00421; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1316654..1317247 Methylococcus capsulatus str. Bath 3102936 YP_113704.1 CDS MCA1241 NC_002977.6 1317254 1317403 R identified by similarity to OMNI:NTL01AT1813; hypothetical protein complement(1317254..1317403) Methylococcus capsulatus str. Bath 3104140 YP_113705.1 CDS pyrD NC_002977.6 1317444 1318466 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(1317444..1318466) Methylococcus capsulatus str. Bath 3103332 YP_113706.1 CDS MCA1243 NC_002977.6 1318463 1319173 R identified by similarity to SP:Q58499; hypothetical protein complement(1318463..1319173) Methylococcus capsulatus str. Bath 3103331 YP_113707.1 CDS MCA1244 NC_002977.6 1319170 1319700 R hypothetical protein complement(1319170..1319700) Methylococcus capsulatus str. Bath 3102905 YP_113708.1 CDS MCA1245 NC_002977.6 1319764 1321161 R identified by match to protein family HMM PF00809; pterin-binding domain-containing protein complement(1319764..1321161) Methylococcus capsulatus str. Bath 3104490 YP_113709.1 CDS MCA1246 NC_002977.6 1321243 1325379 R identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM PF01739; match to protein family HMM PF03705; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; methyltransferase CheR complement(1321243..1325379) Methylococcus capsulatus str. Bath 3104510 YP_113710.1 CDS pgi NC_002977.6 1325412 1327052 R identified by similarity to SP:P11537; match to protein family HMM PF00342; glucose-6-phosphate isomerase complement(1325412..1327052) Methylococcus capsulatus str. Bath 3104273 YP_113711.1 CDS argH NC_002977.6 1327193 1328590 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 1327193..1328590 Methylococcus capsulatus str. Bath 3104272 YP_113712.1 CDS MCA1249 NC_002977.6 1328590 1329213 D identified by match to protein family HMM PF00300; alpha-ribazole-5'-phosphate phosphatase 1328590..1329213 Methylococcus capsulatus str. Bath 3104108 YP_113713.1 CDS MCA1250 NC_002977.6 1329226 1330524 R identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; hypothetical protein complement(1329226..1330524) Methylococcus capsulatus str. Bath 3104917 YP_113714.1 CDS MCA1251 NC_002977.6 1330927 1332189 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 1330927..1332189 Methylococcus capsulatus str. Bath 3104916 YP_113715.2 CDS hppA NC_002977.6 1332289 1334373 D pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 1332289..1334373 Methylococcus capsulatus str. Bath 3102233 YP_113716.1 CDS prlC NC_002977.6 1334611 1336659 D identified by similarity to SP:P27298; match to protein family HMM PF01432; oligopeptidase A 1334611..1336659 Methylococcus capsulatus str. Bath 3104821 YP_113717.1 CDS MCA1254 NC_002977.6 1336693 1336863 D identified by similarity to SP:P09947; match to protein family HMM PF00301; rubredoxin 1336693..1336863 Methylococcus capsulatus str. Bath 3102082 YP_113718.1 CDS MCA1255 NC_002977.6 1336903 1337031 R hypothetical protein complement(1336903..1337031) Methylococcus capsulatus str. Bath 3102081 YP_113719.1 CDS MCA1256 NC_002977.6 1338051 1338665 D identified by similarity to GP:17427469; match to protein family HMM PF04280; hypothetical protein 1338051..1338665 Methylococcus capsulatus str. Bath 3104560 YP_113720.1 CDS MCA1257 NC_002977.6 1338701 1339198 D identified by similarity to SP:P35160; resA domain-containing protein 1338701..1339198 Methylococcus capsulatus str. Bath 3102200 YP_113721.1 CDS MCA1258 NC_002977.6 1339203 1339625 D identified by match to protein family HMM PF03653; match to protein family HMM TIGR00701; hypothetical protein 1339203..1339625 Methylococcus capsulatus str. Bath 3102199 YP_113722.1 CDS MCA1259 NC_002977.6 1339640 1339852 D identified by similarity to GP:8246798; hypothetical protein 1339640..1339852 Methylococcus capsulatus str. Bath 3103429 YP_113723.1 CDS MCA1260 NC_002977.6 1339919 1340686 D identified by match to protein family HMM PF00196; LuxR family transcriptional regulator 1339919..1340686 Methylococcus capsulatus str. Bath 3102057 YP_113724.1 CDS MCA1261 NC_002977.6 1341454 1344525 D hypothetical protein 1341454..1344525 Methylococcus capsulatus str. Bath 3102056 YP_113725.1 CDS MCA1262 NC_002977.6 1344687 1345100 D hypothetical protein 1344687..1345100 Methylococcus capsulatus str. Bath 3102209 YP_113726.1 CDS fabI NC_002977.6 1345763 1346545 R identified by similarity to SP:P29132; match to protein family HMM PF00106; enoyl-ACP reductase complement(1345763..1346545) Methylococcus capsulatus str. Bath 3102846 YP_113727.1 CDS MCA1264 NC_002977.6 1346677 1348842 D identified by similarity to SP:P23843; match to protein family HMM PF00496; peptide ABC transporter substrate-binding protein 1346677..1348842 Methylococcus capsulatus str. Bath 3103597 YP_113728.1 CDS MCA1265 NC_002977.6 1348839 1349816 D identified by similarity to SP:P26903; match to protein family HMM PF00528; peptide ABC transporter permease 1348839..1349816 Methylococcus capsulatus str. Bath 3103733 YP_113729.1 CDS MCA1266 NC_002977.6 1349816 1351204 D identified by match to protein family HMM PF00528; peptide ABC transporter permease 1349816..1351204 Methylococcus capsulatus str. Bath 3103732 YP_113730.1 CDS serB NC_002977.6 1351217 1352059 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488; phosphoserine phosphatase 1351217..1352059 Methylococcus capsulatus str. Bath 3104731 YP_113731.1 CDS MCA1268 NC_002977.6 1352056 1353678 D identified by similarity to OMNI:NTL03PA01808; match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein 1352056..1353678 Methylococcus capsulatus str. Bath 3102969 YP_113732.1 CDS MCA1269 NC_002977.6 1353693 1354091 D identified by similarity to OMNI:NTL01SMB00250; match to protein family HMM PF06803; hypothetical protein 1353693..1354091 Methylococcus capsulatus str. Bath 3102968 YP_113733.1 CDS MCA1270 NC_002977.6 1354291 1354839 R identified by similarity to GP:9107113; match to protein family HMM PF01883; hypothetical protein complement(1354291..1354839) Methylococcus capsulatus str. Bath 3103704 YP_113734.1 CDS MCA1271 NC_002977.6 1354826 1355593 R identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase complement(1354826..1355593) Methylococcus capsulatus str. Bath 3102702 YP_113735.1 CDS ubiG NC_002977.6 1355590 1356303 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(1355590..1356303) Methylococcus capsulatus str. Bath 3102701 YP_113736.1 CDS MCA1273 NC_002977.6 1356317 1357633 R Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; N-ethylammeline chlorohydrolase complement(1356317..1357633) Methylococcus capsulatus str. Bath 3103507 YP_113737.1 CDS MCA1275 NC_002977.6 1358613 1359677 D identified by similarity to OMNI:NTL02ML6584; match to protein family HMM PF01594; hypothetical protein 1358613..1359677 Methylococcus capsulatus str. Bath 3103816 YP_113738.1 CDS murI NC_002977.6 1359698 1360513 D converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 1359698..1360513 Methylococcus capsulatus str. Bath 3104636 YP_113739.1 CDS MCA1277 NC_002977.6 1360555 1361994 R identified by similarity to SP:P02930; match to protein family HMM PF02321; match to protein family HMM TIGR01844; outer membrane protein TolC complement(1360555..1361994) Methylococcus capsulatus str. Bath 3104798 YP_113740.1 CDS MCA1278 NC_002977.6 1362346 1363449 D identified by similarity to OMNI:NTL01SMB00178; hypothetical protein 1362346..1363449 Methylococcus capsulatus str. Bath 3102256 YP_113741.1 CDS MCA1279 NC_002977.6 1363415 1364404 D identified by similarity to OMNI:NTL01SMB00179; match to protein family HMM TIGR02276; hypothetical protein 1363415..1364404 Methylococcus capsulatus str. Bath 3102255 YP_113742.1 CDS MCA1280 NC_002977.6 1364401 1365144 D identified by similarity to OMNI:NTL01SMB00184; match to protein family HMM PF00005; ABC transporter ATP-binding protein 1364401..1365144 Methylococcus capsulatus str. Bath 3102845 YP_113743.1 CDS MCA1281 NC_002977.6 1365141 1365944 D identified by match to protein family HMM PF01061; ABC transporter permease 1365141..1365944 Methylococcus capsulatus str. Bath 3103252 YP_113744.1 CDS rfbB NC_002977.6 1365950 1367023 D identified by similarity to SP:P55295; match to protein family HMM PF01370; match to protein family HMM TIGR01181; dTDP-glucose 4,6-dehydratase 1365950..1367023 Methylococcus capsulatus str. Bath 3103251 YP_113745.1 CDS rfbA NC_002977.6 1367020 1367907 D identified by similarity to SP:P55254; match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase 1367020..1367907 Methylococcus capsulatus str. Bath 3103983 YP_113746.1 CDS rfbC NC_002977.6 1367904 1368461 D identified by similarity to GP:14090389; match to protein family HMM PF00908; match to protein family HMM TIGR01221; dTDP-4-dehydrorhamnose 3,5-epimerase 1367904..1368461 Methylococcus capsulatus str. Bath 3102530 YP_113747.1 CDS rfbD NC_002977.6 1368458 1369363 D identified by similarity to SP:P37760; match to protein family HMM PF04321; match to protein family HMM TIGR01214; dTDP-4-dehydrorhamnose reductase 1368458..1369363 Methylococcus capsulatus str. Bath 3102225 YP_113748.1 CDS dnaE NC_002977.6 1369778 1373275 D identified by similarity to SP:P10443; match to protein family HMM PF01336; match to protein family HMM PF02231; match to protein family HMM PF02811; match to protein family HMM TIGR00594; DNA polymerase III subunit alpha 1369778..1373275 Methylococcus capsulatus str. Bath 3102379 YP_113749.1 CDS MCA1287 NC_002977.6 1373536 1373751 D hypothetical protein 1373536..1373751 Methylococcus capsulatus str. Bath 3102378 YP_113750.1 CDS MCA1288 NC_002977.6 1373904 1375757 R identified by match to protein family HMM PF01471; match to protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase complement(1373904..1375757) Methylococcus capsulatus str. Bath 3103069 YP_113751.1 CDS MCA1289 NC_002977.6 1375769 1377016 R hypothetical protein complement(1375769..1377016) Methylococcus capsulatus str. Bath 3103068 YP_113752.1 CDS MCA1290 NC_002977.6 1377189 1377665 R hypothetical protein complement(1377189..1377665) Methylococcus capsulatus str. Bath 3104730 YP_113753.1 CDS MCA1291 NC_002977.6 1377734 1378243 R identified by similarity to OMNI:NTL01SS03128; hypothetical protein complement(1377734..1378243) Methylococcus capsulatus str. Bath 3103682 YP_113754.1 CDS MCA1292 NC_002977.6 1378308 1378703 R hypothetical protein complement(1378308..1378703) Methylococcus capsulatus str. Bath 3103681 YP_113755.1 CDS MCA1293 NC_002977.6 1378705 1379652 R identified by similarity to OMNI:NTL02ML1264; match to protein family HMM PF00445; ribonuclease T2 family protein complement(1378705..1379652) Methylococcus capsulatus str. Bath 3102579 YP_113756.1 CDS murF NC_002977.6 1379715 1381064 R identified by similarity to SP:P11880; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(1379715..1381064) Methylococcus capsulatus str. Bath 3103100 YP_113757.1 CDS MCA1295 NC_002977.6 1381245 1381520 D hypothetical protein 1381245..1381520 Methylococcus capsulatus str. Bath 3103099 YP_113758.1 CDS MCA1296 NC_002977.6 1381528 1382874 R identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase complement(1381528..1382874) Methylococcus capsulatus str. Bath 3104201 YP_113759.1 CDS MCA1297 NC_002977.6 1382943 1384154 D identified by match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 1382943..1384154 Methylococcus capsulatus str. Bath 3102912 YP_113760.1 CDS MCA1298 NC_002977.6 1384158 1387259 D identified by match to protein family HMM TIGR00914; CzcA family heavy metal efflux protein 1384158..1387259 Methylococcus capsulatus str. Bath 3102911 YP_113761.1 CDS MCA1299 NC_002977.6 1387297 1387614 D identified by match to protein family HMM PF00543; nitrogen regulatory protein P-II 1387297..1387614 Methylococcus capsulatus str. Bath 3102595 YP_113762.1 CDS MCA1300 NC_002977.6 1387621 1388055 R identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein complement(1387621..1388055) Methylococcus capsulatus str. Bath 3104929 YP_113763.1 CDS MCA1301 NC_002977.6 1388055 1389365 R identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; hypothetical protein complement(1388055..1389365) Methylococcus capsulatus str. Bath 3104928 YP_113764.1 CDS MCA1302 NC_002977.6 1389623 1390744 D identified by similarity to OMNI:NTL03PA04951; match to protein family HMM PF00037; match to protein family HMM TIGR00276; iron-sulfur cluster binding protein 1389623..1390744 Methylococcus capsulatus str. Bath 3102643 YP_113765.1 CDS gstB NC_002977.6 1390735 1391349 R identified by similarity to SP:P39100; match to protein family HMM PF02798; glutathione S-transferase complement(1390735..1391349) Methylococcus capsulatus str. Bath 3104524 YP_113766.1 CDS MCA1304 NC_002977.6 1391929 1392654 D identified by similarity to OMNI:VC1375; hypothetical protein 1391929..1392654 Methylococcus capsulatus str. Bath 3102971 YP_113767.1 CDS MCA1305 NC_002977.6 1392651 1394627 D molecular chaperone DnaK 1392651..1394627 Methylococcus capsulatus str. Bath 3102970 YP_113768.1 CDS MCA1306 NC_002977.6 1394584 1397439 D molecular chaperone DnaK 1394584..1397439 Methylococcus capsulatus str. Bath 3104295 YP_113769.1 CDS cdd NC_002977.6 1397475 1397912 D identified by similarity to SP:Q12178; match to protein family HMM PF00383; cytosine deaminase 1397475..1397912 Methylococcus capsulatus str. Bath 3102666 YP_113770.1 CDS MCA1308 NC_002977.6 1397995 1398672 D identified by similarity to GP:16502260; match to protein family HMM PF01027; hypothetical protein 1397995..1398672 Methylococcus capsulatus str. Bath 3102665 YP_113771.1 CDS pnp NC_002977.6 1398752 1400827 R identified by similarity to SP:P05055; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase complement(1398752..1400827) Methylococcus capsulatus str. Bath 3102997 YP_113772.1 CDS rpsO NC_002977.6 1400859 1401128 R identified by similarity to OMNI:VC0646; match to protein family HMM PF00312; match to protein family HMM TIGR00952; 30S ribosomal protein S15 complement(1400859..1401128) Methylococcus capsulatus str. Bath 3102148 YP_113773.1 CDS MCA1311 NC_002977.6 1401244 1401612 R This gene is disrupted by an IS element.; tRNA pseudouridine synthase B, interruption-C complement(1401244..1401612) Methylococcus capsulatus str. Bath 3102756 YP_113774.1 CDS MCA1312 NC_002977.6 1401714 1402814 D identified by match to protein family HMM PF01609; ISMca1, transposase 1401714..1402814 Methylococcus capsulatus str. Bath 3102755 YP_113775.1 CDS MCA1313 NC_002977.6 1402824 1403498 R This gene is disrupted by an IS element.identified by similarity to SP:P09171; match to protein family HMM PF01509; match to protein family HMM TIGR00431; tRNA pseudouridine synthase B, interruption-N complement(1402824..1403498) Methylococcus capsulatus str. Bath 3102746 YP_113776.1 CDS rbfA NC_002977.6 1403504 1403863 R identified by similarity to SP:P09170; match to protein family HMM PF02033; match to protein family HMM TIGR00082; ribosome-binding factor A complement(1403504..1403863) Methylococcus capsulatus str. Bath 3103616 YP_113777.1 CDS infB NC_002977.6 1403876 1406482 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(1403876..1406482) Methylococcus capsulatus str. Bath 3103615 YP_113778.1 CDS nusA NC_002977.6 1406517 1408016 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(1406517..1408016) Methylococcus capsulatus str. Bath 3102698 YP_113779.1 CDS MCA1317 NC_002977.6 1408035 1408487 R identified by similarity to GP:9951008; match to protein family HMM PF02576; hypothetical protein complement(1408035..1408487) Methylococcus capsulatus str. Bath 3104975 YP_113780.1 CDS MCA1318 NC_002977.6 1408736 1409461 D catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 1408736..1409461 Methylococcus capsulatus str. Bath 3103834 YP_113781.1 CDS MCA1319 NC_002977.6 1409473 1410462 R identified by match to protein family HMM PF00152; hypothetical protein complement(1409473..1410462) Methylococcus capsulatus str. Bath 3103833 YP_113782.1 CDS efp NC_002977.6 1410452 1411018 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(1410452..1411018) Methylococcus capsulatus str. Bath 3102067 YP_113783.1 CDS MCA1321 NC_002977.6 1411118 1412089 D identified by match to protein family HMM PF04055; match to protein family HMM TIGR00238; hypothetical protein 1411118..1412089 Methylococcus capsulatus str. Bath 3104880 YP_113784.1 CDS MCA1322 NC_002977.6 1412162 1413106 R identified by similarity to GP:12659324; match to protein family HMM PF06189; 5'-nucleotidase complement(1412162..1413106) Methylococcus capsulatus str. Bath 3104879 YP_113785.1 CDS MCA1323 NC_002977.6 1413103 1413255 R hypothetical protein complement(1413103..1413255) Methylococcus capsulatus str. Bath 3104495 YP_113786.1 CDS MCA1324 NC_002977.6 1413254 1413688 D hypothetical protein 1413254..1413688 Methylococcus capsulatus str. Bath 3102084 YP_113787.1 CDS MCA1325 NC_002977.6 1413723 1414067 R identified by similarity to GP:18145688; match to protein family HMM PF01230; HIT family protein complement(1413723..1414067) Methylococcus capsulatus str. Bath 3102083 YP_113788.1 CDS recR NC_002977.6 1414095 1414691 R identified by similarity to SP:P12727; match to protein family HMM PF01751; match to protein family HMM PF02132; match to protein family HMM TIGR00615; recombination protein RecR complement(1414095..1414691) Methylococcus capsulatus str. Bath 3104652 YP_113789.1 CDS MCA1327 NC_002977.6 1414698 1415021 R identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein complement(1414698..1415021) Methylococcus capsulatus str. Bath 3104404 YP_113790.1 CDS dnaZX NC_002977.6 1415031 1416674 R identified by similarity to SP:P06710; match to protein family HMM PF00004; DNA polymerase III, gamma and tau subunits, programmed frameshift complement(1415031..1416674) Methylococcus capsulatus str. Bath 3104403 YP_113791.1 CDS MCA1329 NC_002977.6 1416957 1417133 D hypothetical protein 1416957..1417133 Methylococcus capsulatus str. Bath 3104094 YP_113792.1 CDS MCA1330 NC_002977.6 1417183 1418604 R identified by similarity to OMNI:NTL03PA01006; match to protein family HMM PF01435; hypothetical protein complement(1417183..1418604) Methylococcus capsulatus str. Bath 3102120 YP_113793.1 CDS dsrE NC_002977.6 1418735 1419106 D identified by similarity to SP:O87896; match to protein family HMM PF02635; intracellular sulfur oxidation protein DsrE 1418735..1419106 Methylococcus capsulatus str. Bath 3102119 YP_113794.1 CDS dsrF NC_002977.6 1419103 1419471 D intracellular sulfur oxidation protein DsrF 1419103..1419471 Methylococcus capsulatus str. Bath 3103228 YP_113795.1 CDS MCA1333 NC_002977.6 1419468 1419776 D identified by similarity to GP:3228384; match to protein family HMM PF04077; intracellular sulfur oxidation protein DsrH 1419468..1419776 Methylococcus capsulatus str. Bath 3103149 YP_113796.1 CDS MCA1334 NC_002977.6 1419767 1420090 D identified by similarity to GP:3228385; match to protein family HMM PF04358; intracellular sulfur oxidation protein DsrC 1419767..1420090 Methylococcus capsulatus str. Bath 3102299 YP_113797.1 CDS MCA1335 NC_002977.6 1420237 1420725 D identified by similarity to SP:P26602; match to protein family HMM PF04345; chorismate--pyruvate lyase 1420237..1420725 Methylococcus capsulatus str. Bath 3102298 YP_113798.1 CDS ubiA NC_002977.6 1420722 1421600 D identified by similarity to SP:P26601; match to protein family HMM PF01040; match to protein family HMM TIGR01474; 4-hydroxybenzoate octaprenyltransferase 1420722..1421600 Methylococcus capsulatus str. Bath 3104248 YP_113799.1 CDS MCA1337 NC_002977.6 1421714 1422535 R identified by similarity to OMNI:NTL03PA03747; match to protein family HMM PF01578; hypothetical protein complement(1421714..1422535) Methylococcus capsulatus str. Bath 3102065 YP_113800.1 CDS ffh NC_002977.6 1422638 1423996 D identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 1422638..1423996 Methylococcus capsulatus str. Bath 3102064 YP_113801.1 CDS MCA1339 NC_002977.6 1424053 1424460 R identified by similarity to SP:P06688; match to protein family HMM PF00376; match to protein family HMM TIGR02051; mercuric resistance operon regulatory protein complement(1424053..1424460) Methylococcus capsulatus str. Bath 3103333 YP_113802.1 CDS merA NC_002977.6 1424708 1426396 D identified by similarity to SP:P94702; match to protein family HMM PF00070; match to protein family HMM PF00403; match to protein family HMM PF02852; match to protein family HMM TIGR02053; mercuric reductase 1424708..1426396 Methylococcus capsulatus str. Bath 3104808 YP_113803.1 CDS MCA1341 NC_002977.6 1426649 1426765 R identified by similarity to SP:P24580; hypothetical protein complement(1426649..1426765) Methylococcus capsulatus str. Bath 3103838 YP_113804.1 CDS MCA1342 NC_002977.6 1427030 1427140 R hypothetical protein complement(1427030..1427140) Methylococcus capsulatus str. Bath 3102220 YP_113805.1 CDS MCA1343 NC_002977.6 1427240 1427773 D identified by similarity to OMNI:NTL01SM02930; match to protein family HMM PF00126; molybdenum transport protein 1427240..1427773 Methylococcus capsulatus str. Bath 3102219 YP_113806.1 CDS MCA1344 NC_002977.6 1427976 1429052 R identified by match to protein family HMM PF00589; phage integrase site specific recombinase complement(1427976..1429052) Methylococcus capsulatus str. Bath 3104786 YP_113807.1 CDS MCA1346 NC_002977.6 1429614 1430699 R identified by match to protein family HMM PF01758; sodium/bile acid symporter family protein complement(1429614..1430699) Methylococcus capsulatus str. Bath 3104605 YP_113808.1 CDS nuoN NC_002977.6 1431465 1432946 R identified by similarity to SP:P29801; match to protein family HMM PF00361; match to protein family HMM TIGR01770; NADH dehydrogenase I subunit N complement(1431465..1432946) Methylococcus capsulatus str. Bath 3104604 YP_113809.1 CDS nuoM NC_002977.6 1432948 1434417 R identified by similarity to SP:P31978; match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH dehydrogenase I subunit M complement(1432948..1434417) Methylococcus capsulatus str. Bath 3105075 YP_113810.1 CDS nuoL NC_002977.6 1434414 1436255 R identified by similarity to SP:P33607; match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974; NADH dehydrogenase I subunit L complement(1434414..1436255) Methylococcus capsulatus str. Bath 3102546 YP_113811.1 CDS nuoK NC_002977.6 1436264 1436572 R identified by similarity to SP:P33606; match to protein family HMM PF00420; NADH dehydrogenase I subunit K complement(1436264..1436572) Methylococcus capsulatus str. Bath 3103403 YP_113812.1 CDS nuoJ NC_002977.6 1436584 1437078 R identified by similarity to SP:P33605; match to protein family HMM PF00499; NADH dehydrogenase I subunit J complement(1436584..1437078) Methylococcus capsulatus str. Bath 3103402 YP_113813.1 CDS nuoI NC_002977.6 1437101 1437616 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(1437101..1437616) Methylococcus capsulatus str. Bath 3102172 YP_113814.1 CDS nuoH NC_002977.6 1437630 1438580 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(1437630..1438580) Methylococcus capsulatus str. Bath 3102504 YP_113815.1 CDS nuoG NC_002977.6 1438577 1441366 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G complement(1438577..1441366) Methylococcus capsulatus str. Bath 3102503 YP_113816.1 CDS nuoF NC_002977.6 1441359 1442642 R identified by similarity to SP:P31979; match to protein family HMM PF01512; match to protein family HMM TIGR01959; NADH dehydrogenase I subunit F complement(1441359..1442642) Methylococcus capsulatus str. Bath 3102556 YP_113817.1 CDS nuoE NC_002977.6 1442642 1443115 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E complement(1442642..1443115) Methylococcus capsulatus str. Bath 3104979 YP_113818.1 CDS nuoCD NC_002977.6 1443128 1444891 R NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; NADH:ubiquinone oxidoreductase subunit C/D complement(1443128..1444891) Methylococcus capsulatus str. Bath 3104978 YP_113819.1 CDS nuoB NC_002977.6 1444910 1445551 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(1444910..1445551) Methylococcus capsulatus str. Bath 3103549 YP_113820.1 CDS nuoA NC_002977.6 1445561 1445980 R identified by similarity to SP:P33597; match to protein family HMM PF00507; NADH dehydrogenase I subunit A complement(1445561..1445980) Methylococcus capsulatus str. Bath 3102690 YP_113821.1 CDS MCA1360 NC_002977.6 1446164 1449328 R identified by match to protein family HMM TIGR00915; hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(1446164..1449328) Methylococcus capsulatus str. Bath 3102689 YP_113822.1 CDS MCA1361 NC_002977.6 1449325 1450488 R identified by similarity to GP:19880979; match to protein family HMM PF00529; match to protein family HMM TIGR01730; HlyD family secretion protein complement(1449325..1450488) Methylococcus capsulatus str. Bath 3102099 YP_113823.1 CDS MCA1362 NC_002977.6 1450622 1452298 R identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; outer membrane efflux family protein complement(1450622..1452298) Methylococcus capsulatus str. Bath 3104767 YP_113824.1 CDS MCA1363 NC_002977.6 1452958 1453842 D identified by similarity to OMNI:NTL03PA03804; hypothetical protein 1452958..1453842 Methylococcus capsulatus str. Bath 3103349 YP_113825.1 CDS MCA1365 NC_002977.6 1454445 1455530 R identified by similarity to OMNI:NTL01SM00467; match to protein family HMM PF03692; hypothetical protein complement(1454445..1455530) Methylococcus capsulatus str. Bath 3104633 YP_113826.1 CDS MCA1366 NC_002977.6 1455628 1456131 R hypothetical protein complement(1455628..1456131) Methylococcus capsulatus str. Bath 3103579 YP_113827.1 CDS MCA1367 NC_002977.6 1456150 1458054 R identified by similarity to SP:P45535; match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1456150..1458054) Methylococcus capsulatus str. Bath 3103578 YP_113828.1 CDS bfr-2 NC_002977.6 1458776 1459255 D identified by match to protein family HMM PF00210; match to protein family HMM TIGR00754; bacterioferritin 1458776..1459255 Methylococcus capsulatus str. Bath 3104951 YP_113829.1 CDS bfd NC_002977.6 1459387 1459590 D identified by similarity to SP:P13655; match to protein family HMM PF04324; bacterioferritin-associated ferredoxin 1459387..1459590 Methylococcus capsulatus str. Bath 3102842 YP_113830.1 CDS def NC_002977.6 1460092 1460667 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(1460092..1460667) Methylococcus capsulatus str. Bath 3102451 YP_113831.1 CDS MCA1372 NC_002977.6 1460669 1461490 R identified by similarity to SP:P17117; match to protein family HMM PF00881; nitroreductase complement(1460669..1461490) Methylococcus capsulatus str. Bath 3102224 YP_113832.1 CDS MCA1373 NC_002977.6 1461444 1461917 R lipoprotein complement(1461444..1461917) Methylococcus capsulatus str. Bath 3104861 YP_113833.1 CDS MCA1374 NC_002977.6 1461993 1462208 D hypothetical protein 1461993..1462208 Methylococcus capsulatus str. Bath 3104860 YP_113834.1 CDS MCA1375 NC_002977.6 1462183 1464015 R hypothetical protein complement(1462183..1464015) Methylococcus capsulatus str. Bath 3103705 YP_113835.1 CDS modA-1 NC_002977.6 1464267 1465016 D identified by similarity to SP:P37734; match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdenum ABC transporter periplasmic molybdate-binding protein 1464267..1465016 Methylococcus capsulatus str. Bath 3103480 YP_113836.1 CDS modA-2 NC_002977.6 1465046 1465816 D identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdenum ABC transporter periplasmic molybdate-binding protein 1465046..1465816 Methylococcus capsulatus str. Bath 3103479 YP_113837.1 CDS modB NC_002977.6 1465827 1466507 D identified by similarity to SP:P37731; match to protein family HMM PF00528; match to protein family HMM TIGR02141; molybdenum ABC transporter permease 1465827..1466507 Methylococcus capsulatus str. Bath 3104227 YP_113838.1 CDS modC NC_002977.6 1466509 1467579 D identified by similarity to SP:P37732; match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM TIGR02142; molybdenum ABC transporter ATP-binding protein 1466509..1467579 Methylococcus capsulatus str. Bath 3102212 YP_113839.1 CDS MCA1381 NC_002977.6 1467677 1468105 D identified by similarity to GP:14277844; match to protein family HMM PF03459; match to protein family HMM TIGR00638; molybdenum transport protein ModG 1467677..1468105 Methylococcus capsulatus str. Bath 3103509 YP_113840.1 CDS MCA1382 NC_002977.6 1468174 1469001 R hypothetical protein complement(1468174..1469001) Methylococcus capsulatus str. Bath 3103508 YP_113841.1 CDS htpX NC_002977.6 1469052 1469936 R metalloprotease; heat shock protein HtpX complement(1469052..1469936) Methylococcus capsulatus str. Bath 3103035 YP_113842.1 CDS MCA1384 NC_002977.6 1470045 1470788 D UbiE/COQ5 family methlytransferase 1470045..1470788 Methylococcus capsulatus str. Bath 3102121 YP_113843.1 CDS radA NC_002977.6 1470818 1472161 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1470818..1472161 Methylococcus capsulatus str. Bath 3103034 YP_113844.1 CDS MCA1386 NC_002977.6 1472158 1472403 D hypothetical protein 1472158..1472403 Methylococcus capsulatus str. Bath 3103275 YP_113845.1 CDS MCA1387 NC_002977.6 1472641 1473138 R identified by similarity to SP:P45947; match to protein family HMM PF01451; arsenate reductase complement(1472641..1473138) Methylococcus capsulatus str. Bath 3105070 YP_113846.1 CDS MCA1388 NC_002977.6 1473135 1473476 R identified by match to protein family HMM PF01022; ArsR family transcriptional regulator complement(1473135..1473476) Methylococcus capsulatus str. Bath 3105069 YP_113847.1 CDS MCA1389 NC_002977.6 1473618 1473851 R identified by similarity to GP:3724147; formate dehydrogenase subunit delta complement(1473618..1473851) Methylococcus capsulatus str. Bath 3102154 YP_113848.1 CDS fdhD NC_002977.6 1473869 1474789 R identified by similarity to SP:P32177; match to protein family HMM PF02634; match to protein family HMM TIGR00129; formate dehydrogenase accessory protein FdhD complement(1473869..1474789) Methylococcus capsulatus str. Bath 3104958 YP_113849.1 CDS MCA1391 NC_002977.6 1474796 1477639 R identified by similarity to GP:17743211; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; formate dehydrogenase subunit alpha complement(1474796..1477639) Methylococcus capsulatus str. Bath 3104957 YP_113850.1 CDS MCA1392 NC_002977.6 1477696 1479246 R identified by similarity to GP:3724144; match to protein family HMM PF01512; formate dehydrogenase subunit beta complement(1477696..1479246) Methylococcus capsulatus str. Bath 3102949 YP_113851.1 CDS MCA1393 NC_002977.6 1479243 1479722 R catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor; formate dehydrogenase subunit gamma complement(1479243..1479722) Methylococcus capsulatus str. Bath 3104512 YP_113852.1 CDS MCA1394 NC_002977.6 1479866 1481497 R hypothetical protein complement(1479866..1481497) Methylococcus capsulatus str. Bath 3104480 YP_113853.1 CDS MCA1395 NC_002977.6 1481572 1483350 D hypothetical protein 1481572..1483350 Methylococcus capsulatus str. Bath 3104479 YP_113854.1 CDS MCA1396 NC_002977.6 1483434 1484102 R identified by match to protein family HMM PF00226; DnaJ domain-containing protein complement(1483434..1484102) Methylococcus capsulatus str. Bath 3104907 YP_113855.1 CDS MCA1397 NC_002977.6 1484162 1484479 R hypothetical protein complement(1484162..1484479) Methylococcus capsulatus str. Bath 3103208 YP_113856.1 CDS MCA1398 NC_002977.6 1484611 1485039 D hypothetical protein 1484611..1485039 Methylococcus capsulatus str. Bath 3103207 YP_113857.1 CDS MCA1399 NC_002977.6 1485107 1487599 R identified by match to protein family HMM PF02687; ABC transporter permease complement(1485107..1487599) Methylococcus capsulatus str. Bath 3103287 YP_113858.1 CDS MCA1400 NC_002977.6 1487596 1488255 R identified by similarity to OMNI:VCA0782; match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1487596..1488255) Methylococcus capsulatus str. Bath 3103620 YP_113859.1 CDS MCA1401 NC_002977.6 1488236 1488916 D identified by similarity to SP:Q07792; match to protein family HMM PF00657; arylesterase 1488236..1488916 Methylococcus capsulatus str. Bath 3103619 YP_113860.1 CDS MCA1402 NC_002977.6 1488913 1489266 D identified by similarity to GP:19071499; hypothetical protein 1488913..1489266 Methylococcus capsulatus str. Bath 3104894 YP_113861.1 CDS MCA1403 NC_002977.6 1489271 1490476 R identified by similarity to SP:P23931; match to protein family HMM PF01464; membrane-bound lytic murein transglycosylase complement(1489271..1490476) Methylococcus capsulatus str. Bath 3102442 YP_113862.1 CDS MCA1404 NC_002977.6 1490644 1492380 R identified by match to protein family HMM PF01565; FAD-binding protein complement(1490644..1492380) Methylococcus capsulatus str. Bath 3103258 YP_113863.1 CDS MCA1405 NC_002977.6 1492703 1492948 R hypothetical protein complement(1492703..1492948) Methylococcus capsulatus str. Bath 3103257 YP_113864.1 CDS sgaA NC_002977.6 1492959 1494146 D identified by match to protein family HMM PF00266; serine--glyoxylate aminotransferase 1492959..1494146 Methylococcus capsulatus str. Bath 3102625 YP_113865.1 CDS MCA1407 NC_002977.6 1494241 1495212 D Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase 1494241..1495212 Methylococcus capsulatus str. Bath 3104856 YP_113866.1 CDS MCA1408 NC_002977.6 1495321 1496187 D identified by similarity to OMNI:CC2910; hypothetical protein 1495321..1496187 Methylococcus capsulatus str. Bath 3104855 YP_113867.1 CDS psd NC_002977.6 1496184 1497050 D identified by similarity to SP:P43789; match to protein family HMM PF02666; match to protein family HMM TIGR00163; phosphatidylserine decarboxylase 1496184..1497050 Methylococcus capsulatus str. Bath 3103969 YP_113868.1 CDS MCA1410 NC_002977.6 1497016 1498221 R identified by similarity to OMNI:VC1912; hypothetical protein complement(1497016..1498221) Methylococcus capsulatus str. Bath 3102884 YP_113869.1 CDS ihfB NC_002977.6 1498297 1498584 R identified by similarity to SP:P08756; match to protein family HMM PF00216; match to protein family HMM TIGR00988; integration host factor subunit beta complement(1498297..1498584) Methylococcus capsulatus str. Bath 3103395 YP_113870.1 CDS rpsA NC_002977.6 1498659 1500326 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(1498659..1500326) Methylococcus capsulatus str. Bath 3104284 YP_113871.1 CDS cmk NC_002977.6 1500445 1501113 R identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017; cytidylate kinase complement(1500445..1501113) Methylococcus capsulatus str. Bath 3104283 YP_113872.1 CDS aroA NC_002977.6 1501120 1502388 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(1501120..1502388) Methylococcus capsulatus str. Bath 3103431 YP_113873.1 CDS tyrA NC_002977.6 1502426 1503298 R identified by match to protein family HMM PF02153; prephenate dehydrogenase complement(1502426..1503298) Methylococcus capsulatus str. Bath 3102074 YP_113874.1 CDS hisC-2 NC_002977.6 1503295 1504410 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(1503295..1504410) Methylococcus capsulatus str. Bath 3102073 YP_113875.1 CDS pheA NC_002977.6 1504421 1505509 R identified by similarity to SP:P27603; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807; chorismate mutase/prephenate dehydratase complement(1504421..1505509) Methylococcus capsulatus str. Bath 3102688 YP_113876.1 CDS MCA1419 NC_002977.6 1505539 1505991 R hypothetical protein complement(1505539..1505991) Methylococcus capsulatus str. Bath 3102687 YP_113877.1 CDS serC NC_002977.6 1506034 1507116 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase complement(1506034..1507116) Methylococcus capsulatus str. Bath 3104546 YP_113878.1 CDS gyrA NC_002977.6 1507243 1509825 R identified by similarity to SP:P09097; match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063; DNA gyrase subunit A complement(1507243..1509825) Methylococcus capsulatus str. Bath 3102748 YP_113879.1 CDS MCA1422 NC_002977.6 1509919 1511772 R hypothetical protein complement(1509919..1511772) Methylococcus capsulatus str. Bath 3102747 YP_113880.1 CDS MCA1423 NC_002977.6 1511745 1512464 R identified by match to protein family HMM PF01755; glycosyl transferase family protein complement(1511745..1512464) Methylococcus capsulatus str. Bath 3103156 YP_113881.1 CDS MCA1424 NC_002977.6 1512605 1515421 D identified by match to protein family HMM PF07690; transporter 1512605..1515421 Methylococcus capsulatus str. Bath 3104839 YP_113882.1 CDS MCA1425 NC_002977.6 1515416 1516798 R identified by similarity to GP:17427522; hypothetical protein complement(1515416..1516798) Methylococcus capsulatus str. Bath 3104838 YP_113883.1 CDS MCA1426 NC_002977.6 1516798 1517388 R identified by similarity to SP:P08632; match to protein family HMM PF00132; nodulation protein L complement(1516798..1517388) Methylococcus capsulatus str. Bath 3104642 YP_113884.1 CDS MCA1427 NC_002977.6 1517393 1518409 R identified by similarity to GP:18159365; match to protein family HMM PF00535; glycosyl transferase group 2 family protein complement(1517393..1518409) Methylococcus capsulatus str. Bath 3103071 YP_113885.1 CDS MCA1428 NC_002977.6 1518402 1519460 R identified by similarity to OMNI:CC0755; match to protein family HMM PF00534; glycosyl transferase family protein complement(1518402..1519460) Methylococcus capsulatus str. Bath 3104389 YP_113886.1 CDS MCA1429 NC_002977.6 1519457 1521577 R identified by match to protein family HMM PF02706; chain length determinant protein complement(1519457..1521577) Methylococcus capsulatus str. Bath 3104388 YP_113887.1 CDS MCA1430 NC_002977.6 1521588 1522589 R identified by similarity to SP:Q45407; match to protein family HMM PF02563; capsular polysaccharide export protein complement(1521588..1522589) Methylococcus capsulatus str. Bath 3102250 YP_113888.1 CDS MCA1431 NC_002977.6 1522651 1522995 R identified by similarity to SP:P17903; match to protein family HMM PF01740; match to protein family HMM TIGR00377; anti-anti-sigma factor family protein complement(1522651..1522995) Methylococcus capsulatus str. Bath 3102724 YP_113889.1 CDS MCA1432 NC_002977.6 1523154 1524437 D identified by match to protein family HMM PF00534; glycosyl transferase family protein 1523154..1524437 Methylococcus capsulatus str. Bath 3102723 YP_113890.1 CDS MCA1433 NC_002977.6 1524434 1525663 D identified by match to protein family HMM PF00534; glycosyl transferase family protein 1524434..1525663 Methylococcus capsulatus str. Bath 3102349 YP_113891.1 CDS MCA1434 NC_002977.6 1525682 1526872 D identified by similarity to GP:15024655; match to protein family HMM PF00535; glycosyl transferase group 2 family protein 1525682..1526872 Methylococcus capsulatus str. Bath 3102768 YP_113892.1 CDS MCA1435 NC_002977.6 1526859 1527833 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 1526859..1527833 Methylococcus capsulatus str. Bath 3103633 YP_113893.1 CDS MCA1436 NC_002977.6 1527839 1528351 D identified by similarity to SP:P71405; match to protein family HMM PF00132; serine acetyltransferase CysE 1527839..1528351 Methylococcus capsulatus str. Bath 3103632 YP_113894.1 CDS MCA1437 NC_002977.6 1528353 1529669 D identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; sugar transferase 1528353..1529669 Methylococcus capsulatus str. Bath 3103375 YP_113895.1 CDS MCA1438 NC_002977.6 1529722 1530903 D identified by similarity to GP:15023201; hypothetical protein 1529722..1530903 Methylococcus capsulatus str. Bath 3104756 YP_113896.1 CDS MCA1439 NC_002977.6 1530894 1532357 D identified by similarity to OMNI:NTL01MT01553; hypothetical protein 1530894..1532357 Methylococcus capsulatus str. Bath 3104755 YP_113897.1 CDS MCA1440 NC_002977.6 1532358 1533533 D identified by match to protein family HMM PF00072; match to protein family HMM PF07228; response regulator 1532358..1533533 Methylococcus capsulatus str. Bath 3103233 YP_113898.1 CDS MCA1441 NC_002977.6 1533987 1534613 R identified by match to protein family HMM PF01209; UbiE/COQ5 family methlytransferase complement(1533987..1534613) Methylococcus capsulatus str. Bath 3104562 YP_113899.1 CDS MCA1442 NC_002977.6 1534665 1535309 R identified by match to protein family HMM PF00484; carbonic anhydrase complement(1534665..1535309) Methylococcus capsulatus str. Bath 3103405 YP_113900.1 CDS MCA1443 NC_002977.6 1535365 1536966 R identified by match to protein family HMM PF00916; sulfate transporter family protein complement(1535365..1536966) Methylococcus capsulatus str. Bath 3103404 YP_113901.1 CDS MCA1444 NC_002977.6 1537097 1537540 D hypothetical protein 1537097..1537540 Methylococcus capsulatus str. Bath 3102520 YP_113902.1 CDS MCA1445 NC_002977.6 1537576 1538112 R hypothetical protein complement(1537576..1538112) Methylococcus capsulatus str. Bath 3104781 YP_113903.1 CDS pqqA NC_002977.6 1538132 1538206 D identified by match to protein family HMM TIGR02107; coenzyme PQQ biosynthesis protein A 1538132..1538206 Methylococcus capsulatus str. Bath 3104434 YP_113904.1 CDS pqqB NC_002977.6 1538293 1539207 D possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB 1538293..1539207 Methylococcus capsulatus str. Bath 3104780 YP_113905.1 CDS pqqC NC_002977.6 1539216 1539941 D Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC 1539216..1539941 Methylococcus capsulatus str. Bath 3103081 YP_113906.1 CDS pqqD NC_002977.6 1539947 1540228 D with PqqC converts a biosynthetic intermediate to pyrroloquinoline quinone; pyrroloquinoline quinone biosynthesis protein PqqD 1539947..1540228 Methylococcus capsulatus str. Bath 3105038 YP_113907.1 CDS pqqE NC_002977.6 1540197 1541318 D identified by similarity to SP:P07782; match to protein family HMM PF04055; match to protein family HMM TIGR02109; pyrroloquinoline quinone biosynthesis protein PqqE 1540197..1541318 Methylococcus capsulatus str. Bath 3105037 YP_113908.1 CDS holA NC_002977.6 1541635 1542639 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(1541635..1542639) Methylococcus capsulatus str. Bath 3102812 YP_113909.1 CDS rlpB NC_002977.6 1542636 1543154 R identified by similarity to SP:P10101; rare lipoprotein B complement(1542636..1543154) Methylococcus capsulatus str. Bath 3103336 YP_113910.1 CDS leuS NC_002977.6 1543151 1545814 R identified by match to protein family HMM PF00133; match to protein family HMM TIGR00396; leucyl-tRNA synthetase complement(1543151..1545814) Methylococcus capsulatus str. Bath 3103369 YP_113911.1 CDS MCA1454 NC_002977.6 1545932 1546708 D identified by match to protein family HMM PF01656; ParA family protein 1545932..1546708 Methylococcus capsulatus str. Bath 3103368 YP_113912.1 CDS lnt NC_002977.6 1546705 1548219 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(1546705..1548219) Methylococcus capsulatus str. Bath 3104014 YP_113913.1 CDS MCA1456 NC_002977.6 1548223 1549077 R identified by similarity to SP:Q9R874; match to protein family HMM PF00571; match to protein family HMM PF03471; magnesium and cobalt efflux protein CorC complement(1548223..1549077) Methylococcus capsulatus str. Bath 3104945 YP_113914.1 CDS MCA1457 NC_002977.6 1549074 1549526 R identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; hypothetical protein complement(1549074..1549526) Methylococcus capsulatus str. Bath 3104944 YP_113915.1 CDS MCA1458 NC_002977.6 1549523 1550548 R identified by similarity to SP:P77349; match to protein family HMM PF02562; PhoH family protein complement(1549523..1550548) Methylococcus capsulatus str. Bath 3103166 YP_113916.1 CDS MCA1459 NC_002977.6 1550502 1551878 R identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01574; tRNA-i(6)A37 modification enzyme MiaB complement(1550502..1551878) Methylococcus capsulatus str. Bath 3102404 YP_113917.1 CDS MCA1460 NC_002977.6 1551986 1552567 R identified by similarity to OMNI:NTL03PA01119; hypothetical protein complement(1551986..1552567) Methylococcus capsulatus str. Bath 3102430 YP_113918.1 CDS recO NC_002977.6 1552671 1553399 R identified by similarity to SP:P15027; match to protein family HMM PF02565; match to protein family HMM TIGR00613; DNA repair protein RecO complement(1552671..1553399) Methylococcus capsulatus str. Bath 3102429 YP_113919.1 CDS era NC_002977.6 1553415 1554296 R identified by similarity to SP:P06616; match to protein family HMM PF07650; match to protein family HMM TIGR00231; match to protein family HMM TIGR00436; match to protein family HMM TIGR00650; GTP-binding protein Era complement(1553415..1554296) Methylococcus capsulatus str. Bath 3104732 YP_113920.1 CDS rnc NC_002977.6 1554293 1554985 R identified by similarity to SP:P05797; match to protein family HMM PF00035; match to protein family HMM PF00636; match to protein family HMM TIGR02191; ribonuclease III complement(1554293..1554985) Methylococcus capsulatus str. Bath 3102357 YP_113921.1 CDS MCA1464 NC_002977.6 1554982 1555359 R hypothetical protein complement(1554982..1555359) Methylococcus capsulatus str. Bath 3102356 YP_113922.1 CDS lepB NC_002977.6 1555363 1556151 R identified by similarity to SP:P00803; match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I complement(1555363..1556151) Methylococcus capsulatus str. Bath 3104582 YP_113923.1 CDS lepA NC_002977.6 1556166 1557971 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(1556166..1557971) Methylococcus capsulatus str. Bath 3103401 YP_113924.1 CDS MCA1467 NC_002977.6 1557968 1559389 R identified by similarity to GP:1345104; match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; serine protease MucD complement(1557968..1559389) Methylococcus capsulatus str. Bath 3102844 YP_113925.1 CDS mucC NC_002977.6 1559448 1559888 R identified by similarity to GP:1345103; match to protein family HMM PF04246; sigma factor regulator MucC complement(1559448..1559888) Methylococcus capsulatus str. Bath 3102843 YP_113926.1 CDS MCA1469 NC_002977.6 1559900 1560898 R identified by similarity to SP:P46186; sigma-E factor regulatory protein complement(1559900..1560898) Methylococcus capsulatus str. Bath 3102234 YP_113927.1 CDS MCA1470 NC_002977.6 1560917 1561423 R identified by similarity to GP:18496604; hypothetical protein complement(1560917..1561423) Methylococcus capsulatus str. Bath 3102632 YP_113928.1 CDS rpoE NC_002977.6 1561445 1562023 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(1561445..1562023) Methylococcus capsulatus str. Bath 3102631 YP_113929.1 CDS nadB NC_002977.6 1562203 1563804 D catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 1562203..1563804 Methylococcus capsulatus str. Bath 3104515 YP_113930.1 CDS malQ NC_002977.6 1563816 1565300 R identified by similarity to SP:P29851; match to protein family HMM PF02446; match to protein family HMM TIGR00217; 4-alpha-glucanotransferase complement(1563816..1565300) Methylococcus capsulatus str. Bath 3104186 YP_113931.1 CDS glgC NC_002977.6 1565373 1566647 R catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase complement(1565373..1566647) Methylococcus capsulatus str. Bath 3104185 YP_113932.1 CDS glgB NC_002977.6 1566799 1569021 D catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 1566799..1569021 Methylococcus capsulatus str. Bath 3103570 YP_113933.1 CDS glgA NC_002977.6 1569018 1570499 D identified by similarity to SP:P08323; match to protein family HMM PF00534; match to protein family HMM TIGR02095; glycogen synthase 1569018..1570499 Methylococcus capsulatus str. Bath 3104785 YP_113934.1 CDS MCA1477 NC_002977.6 1570515 1571117 R identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052; hypothetical protein complement(1570515..1571117) Methylococcus capsulatus str. Bath 3104784 YP_113935.1 CDS MCA1478 NC_002977.6 1571117 1572100 R identified by similarity to SP:O34525; match to protein family HMM PF01343; match to protein family HMM TIGR00706; signal peptide peptidase SppA complement(1571117..1572100) Methylococcus capsulatus str. Bath 3104665 YP_113936.1 CDS rluC NC_002977.6 1572164 1573114 R identified by similarity to SP:P23851; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase C complement(1572164..1573114) Methylococcus capsulatus str. Bath 3105000 YP_113937.1 CDS MCA1480 NC_002977.6 1573384 1573845 D hypothetical protein 1573384..1573845 Methylococcus capsulatus str. Bath 3104999 YP_113938.1 CDS rne NC_002977.6 1573769 1576426 D identified by similarity to SP:P21513; match to protein family HMM PF00575; match to protein family HMM TIGR00757; ribonuclease E 1573769..1576426 Methylococcus capsulatus str. Bath 3103735 YP_113939.1 CDS MCA1482 NC_002977.6 1576525 1580409 R identified by similarity to SP:P43329; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM TIGR01967; ATP-dependent helicase HrpA complement(1576525..1580409) Methylococcus capsulatus str. Bath 3104911 YP_113940.1 CDS MCA1483 NC_002977.6 1580416 1581180 R identified by similarity to SP:P55475; match to protein family HMM PF01061; match to protein family HMM TIGR01291; ABC transporter permease NodJ complement(1580416..1581180) Methylococcus capsulatus str. Bath 3103613 YP_113941.1 CDS nodI NC_002977.6 1581173 1582102 R identified by similarity to SP:P72335; match to protein family HMM PF00005; nodulation ABC transporter NodI complement(1581173..1582102) Methylococcus capsulatus str. Bath 3102232 YP_113942.1 CDS MCA1485 NC_002977.6 1582211 1582930 R identified by similarity to GP:19887278; match to protein family HMM PF01887; hypothetical protein complement(1582211..1582930) Methylococcus capsulatus str. Bath 3104194 YP_113943.1 CDS tatC NC_002977.6 1582949 1583713 R identified by similarity to SP:P27857; match to protein family HMM PF00902; match to protein family HMM TIGR00945; Sec-independent protein translocase TatC complement(1582949..1583713) Methylococcus capsulatus str. Bath 3104193 YP_113944.1 CDS tatB NC_002977.6 1583736 1584050 R identified by match to protein family HMM PF02416; match to protein family HMM TIGR01410; Sec-independent protein translocase TatB complement(1583736..1584050) Methylococcus capsulatus str. Bath 3102314 YP_113945.1 CDS tatA NC_002977.6 1584058 1584270 R identified by similarity to GP:12831974; match to protein family HMM PF02416; match to protein family HMM TIGR01411; Sec-independent protein translocase TatA complement(1584058..1584270) Methylococcus capsulatus str. Bath 3103552 YP_113946.1 CDS MCA1489 NC_002977.6 1584294 1584698 R hypothetical protein complement(1584294..1584698) Methylococcus capsulatus str. Bath 3103551 YP_113947.1 CDS dapD NC_002977.6 1584731 1585546 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(1584731..1585546) Methylococcus capsulatus str. Bath 3104489 YP_113948.1 CDS MCA1491 NC_002977.6 1585559 1586755 R catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase complement(1585559..1586755) Methylococcus capsulatus str. Bath 3103795 YP_113949.1 CDS MCA1492 NC_002977.6 1586849 1588114 R identified by match to protein family HMM PF07586; match to protein family HMM TIGR01409; Tat pathway signal sequence domain-containing protein complement(1586849..1588114) Methylococcus capsulatus str. Bath 3102990 YP_113950.1 CDS MCA1493 NC_002977.6 1588125 1591292 R identified by match to protein family HMM PF00041; match to protein family HMM PF00553; match to protein family HMM PF07631; match to protein family HMM PF07637; cellulose-binding domain-containing protein complement(1588125..1591292) Methylococcus capsulatus str. Bath 3102989 YP_113951.1 CDS MCA1494 NC_002977.6 1592110 1593477 D identified by match to protein family HMM PF01494; oxidoreductase, FAD-binding 1592110..1593477 Methylococcus capsulatus str. Bath 3103567 YP_113952.1 CDS MCA1495 NC_002977.6 1593489 1594496 D identified by similarity to GP:2624947; hypothetical protein 1593489..1594496 Methylococcus capsulatus str. Bath 3102567 YP_113953.1 CDS MCA1496 NC_002977.6 1594537 1595289 D identified by match to protein family HMM PF01553; acyltransferase 1594537..1595289 Methylococcus capsulatus str. Bath 3102566 YP_113954.1 CDS MCA1497 NC_002977.6 1595293 1596060 D identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 1595293..1596060 Methylococcus capsulatus str. Bath 3102177 YP_113955.1 CDS MCA1498 NC_002977.6 1596078 1596572 D identified by match to protein family HMM PF00383; zinc-binding domain-containing protein 1596078..1596572 Methylococcus capsulatus str. Bath 3104820 YP_113956.1 CDS glcF NC_002977.6 1596599 1597807 R identified by similarity to SP:P52074; match to protein family HMM PF00037; match to protein family HMM PF02754; glycolate oxidase iron-sulfur subunit complement(1596599..1597807) Methylococcus capsulatus str. Bath 3102181 YP_113957.1 CDS glcE NC_002977.6 1597808 1598869 R identified by similarity to SP:P52073; match to protein family HMM PF01565; glycolate oxidase FAD binding subunit complement(1597808..1598869) Methylococcus capsulatus str. Bath 3102180 YP_113958.1 CDS glcD NC_002977.6 1598878 1600332 R identified by similarity to SP:P52075; match to protein family HMM PF01565; match to protein family HMM PF02913; glycolate oxidase subunit GlcD complement(1598878..1600332) Methylococcus capsulatus str. Bath 3103186 YP_113959.1 CDS MCA1502 NC_002977.6 1600350 1601063 R identified by match to protein family HMM PF01694; rhomboid family protein complement(1600350..1601063) Methylococcus capsulatus str. Bath 3102650 YP_113960.1 CDS MCA1503 NC_002977.6 1601060 1601962 R identified by similarity to OMNI:NTL03PA04934; hypothetical protein complement(1601060..1601962) Methylococcus capsulatus str. Bath 3102649 YP_113961.1 CDS MCA1504 NC_002977.6 1602141 1603400 D identified by similarity to GP:7381242; match to protein family HMM PF00174; match to protein family HMM PF03404; match to protein family HMM TIGR01409; sulfite oxidase SoxC 1602141..1603400 Methylococcus capsulatus str. Bath 3102610 YP_113962.1 CDS MCA1506 NC_002977.6 1603943 1605637 D hypothetical protein 1603943..1605637 Methylococcus capsulatus str. Bath 3102464 YP_113963.1 CDS MCA1507 NC_002977.6 1606453 1606734 R hypothetical protein complement(1606453..1606734) Methylococcus capsulatus str. Bath 3102654 YP_113964.1 CDS MCA1508 NC_002977.6 1606779 1607831 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 1606779..1607831 Methylococcus capsulatus str. Bath 3102653 YP_113965.1 CDS MCA1509 NC_002977.6 1607847 1609946 D identified by match to protein family HMM PF00515; hypothetical protein 1607847..1609946 Methylococcus capsulatus str. Bath 3103131 YP_113966.1 CDS MCA1510 NC_002977.6 1609935 1610351 R identified by similarity to SP:P05431; match to protein family HMM PF00114; fimbrial protein complement(1609935..1610351) Methylococcus capsulatus str. Bath 3103894 YP_113967.1 CDS MCA1511 NC_002977.6 1610449 1612026 R identified by match to protein family HMM PF00515; hypothetical protein complement(1610449..1612026) Methylococcus capsulatus str. Bath 3103893 YP_113968.1 CDS MCA1512 NC_002977.6 1612101 1613753 R identified by similarity to SP:P21296; match to protein family HMM PF00515; hypothetical protein complement(1612101..1613753) Methylococcus capsulatus str. Bath 3103634 YP_113969.1 CDS MCA1513 NC_002977.6 1613878 1614576 R identified by similarity to OMNI:NTL01SMB00546; hypothetical protein complement(1613878..1614576) Methylococcus capsulatus str. Bath 3102847 YP_113970.1 CDS MCA1514 NC_002977.6 1614981 1616081 R identified by match to protein family HMM PF01609; ISMca1, transposase complement(1614981..1616081) Methylococcus capsulatus str. Bath 3104161 YP_113971.1 CDS MCA1515 NC_002977.6 1616232 1617839 R identified by similarity to GP:17129902; hypothetical protein complement(1616232..1617839) Methylococcus capsulatus str. Bath 3104160 YP_113972.1 CDS MCA1516 NC_002977.6 1617829 1618911 R This gene is interrupted by an IS element.identified by similarity to GP:17430189; match to protein family HMM PF00515; hypothetical protein complement(1617829..1618911) Methylococcus capsulatus str. Bath 3104968 YP_113973.1 CDS MCA1517 NC_002977.6 1619059 1620159 D identified by match to protein family HMM PF01609; ISMca1, transposase 1619059..1620159 Methylococcus capsulatus str. Bath 3104253 YP_113974.1 CDS MCA1518 NC_002977.6 1620150 1620926 R This gene is interrupted by an IS element.identified by match to protein family HMM PF00515; hypothetical protein complement(1620150..1620926) Methylococcus capsulatus str. Bath 3104252 YP_113975.1 CDS MCA1519 NC_002977.6 1621535 1623274 D identified by match to protein family HMM PF02254; sodium/hydrogen exchanger family protein 1621535..1623274 Methylococcus capsulatus str. Bath 3102146 YP_113976.1 CDS MCA1520 NC_002977.6 1623283 1623480 D hypothetical protein 1623283..1623480 Methylococcus capsulatus str. Bath 3104637 YP_113977.1 CDS MCA1521 NC_002977.6 1623477 1624823 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator family transporter complement(1623477..1624823) Methylococcus capsulatus str. Bath 3103891 YP_113978.1 CDS MCA1522 NC_002977.6 1624934 1625743 D identified by similarity to SP:P37695; match to protein family HMM PF01648; 4'-phosphopantetheinyl transferase 1624934..1625743 Methylococcus capsulatus str. Bath 3103890 YP_113979.1 CDS MCA1523 NC_002977.6 1625835 1626044 D identified by similarity to SP:P41016; match to protein family HMM PF00313; cold shock protein 1625835..1626044 Methylococcus capsulatus str. Bath 3102128 YP_113980.1 CDS MCA1524 NC_002977.6 1626150 1626599 D hypothetical protein 1626150..1626599 Methylococcus capsulatus str. Bath 3102127 YP_113981.1 CDS MCA1525 NC_002977.6 1626685 1627713 D identified by similarity to SP:P29901; moxR protein 1626685..1627713 Methylococcus capsulatus str. Bath 3102636 YP_113982.1 CDS MCA1526 NC_002977.6 1627710 1628549 D identified by similarity to OMNI:BB0175; hypothetical protein 1627710..1628549 Methylococcus capsulatus str. Bath 3104669 YP_113983.1 CDS MCA1528 NC_002977.6 1629451 1630428 D identified by similarity to GP:1164996; MxaC protein 1629451..1630428 Methylococcus capsulatus str. Bath 3102188 YP_113984.1 CDS MCA1529 NC_002977.6 1630422 1630976 D identified by similarity to GP:2828246; MxaK protein 1630422..1630976 Methylococcus capsulatus str. Bath 3104114 YP_113985.1 CDS MCA1530 NC_002977.6 1630973 1631899 D identified by similarity to GP:773183; MxaL protein 1630973..1631899 Methylococcus capsulatus str. Bath 3104113 YP_113986.1 CDS MCA1531 NC_002977.6 1631886 1632101 D identified by similarity to OMNI:DR2086; hypothetical protein 1631886..1632101 Methylococcus capsulatus str. Bath 3102838 YP_113987.1 CDS trmB NC_002977.6 1632163 1632858 D identified by match to protein family HMM PF02390; match to protein family HMM TIGR00091; tRNA (guanine-N(7)-)-methyltransferase 1632163..1632858 Methylococcus capsulatus str. Bath 3102837 YP_113988.1 CDS MCA1533 NC_002977.6 1632843 1635740 R identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein complement(1632843..1635740) Methylococcus capsulatus str. Bath 3102613 YP_113989.1 CDS MCA1534 NC_002977.6 1635875 1636453 R identified by match to protein family HMM PF02325; hypothetical protein complement(1635875..1636453) Methylococcus capsulatus str. Bath 3102210 YP_113990.1 CDS proC NC_002977.6 1636457 1637281 R identified by similarity to SP:P22008; match to protein family HMM PF01089; match to protein family HMM TIGR00112; pyrroline-5-carboxylate reductase complement(1636457..1637281) Methylococcus capsulatus str. Bath 3102586 YP_113991.1 CDS MCA1536 NC_002977.6 1637352 1638041 R identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein complement(1637352..1638041) Methylococcus capsulatus str. Bath 3102585 YP_113992.1 CDS pilT NC_002977.6 1638097 1639131 D identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching motility protein PilT 1638097..1639131 Methylococcus capsulatus str. Bath 3103065 YP_113993.1 CDS pilU NC_002977.6 1639147 1640265 D identified by similarity to OMNI:NTL03PA00397; match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching motility protein PilU 1639147..1640265 Methylococcus capsulatus str. Bath 3103064 YP_113994.1 CDS MCA1539 NC_002977.6 1640804 1642597 R identified by similarity to OMNI:NTL01PM1830; hypothetical protein complement(1640804..1642597) Methylococcus capsulatus str. Bath 3104919 YP_113995.1 CDS MCA1540 NC_002977.6 1642608 1643030 R hypothetical protein complement(1642608..1643030) Methylococcus capsulatus str. Bath 3104918 YP_113996.1 CDS MCA1541 NC_002977.6 1643024 1643275 R identified by similarity to GP:9106024; match to protein family HMM PF03937; hypothetical protein complement(1643024..1643275) Methylococcus capsulatus str. Bath 3102852 YP_113997.1 CDS sdhB NC_002977.6 1643272 1644054 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(1643272..1644054) Methylococcus capsulatus str. Bath 3104200 YP_113998.1 CDS fumC NC_002977.6 1644087 1645496 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(1644087..1645496) Methylococcus capsulatus str. Bath 3104199 YP_113999.1 CDS MCA1544 NC_002977.6 1645518 1645754 R identified by similarity to GP:9949137; hypothetical protein complement(1645518..1645754) Methylococcus capsulatus str. Bath 3104428 YP_114000.1 CDS metH NC_002977.6 1645744 1649457 R one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase complement(1645744..1649457) Methylococcus capsulatus str. Bath 3104427 YP_114001.1 CDS MCA1546 NC_002977.6 1649662 1650054 D hypothetical protein 1649662..1650054 Methylococcus capsulatus str. Bath 3104521 YP_114002.1 CDS MCA1547 NC_002977.6 1650041 1650778 R hypothetical protein complement(1650041..1650778) Methylococcus capsulatus str. Bath 3104520 YP_114003.1 CDS MCA1548 NC_002977.6 1650853 1651269 D identified by similarity to SP:P10446; match to protein family HMM PF01127; succinate dehydrogenase, cytochrome b556 subunit 1650853..1651269 Methylococcus capsulatus str. Bath 3104981 YP_114004.1 CDS MCA1549 NC_002977.6 1651275 1651655 D identified by similarity to SP:P10445; match to protein family HMM PF01127; succinate dehydrogenase, hydrophobic membrane anchor protein 1651275..1651655 Methylococcus capsulatus str. Bath 3104442 YP_114005.1 CDS sdhA NC_002977.6 1651661 1653448 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1651661..1653448 Methylococcus capsulatus str. Bath 3104441 YP_114006.1 CDS MCA1551 NC_002977.6 1653611 1654150 D hypothetical protein 1653611..1654150 Methylococcus capsulatus str. Bath 3105059 YP_114007.1 CDS MCA1552 NC_002977.6 1654153 1654488 D identified by similarity to OMNI:NTL01SM00306; match to protein family HMM PF03960; match to protein family HMM TIGR01617; ArsC family protein 1654153..1654488 Methylococcus capsulatus str. Bath 3105058 YP_114008.1 CDS dapE NC_002977.6 1654485 1655618 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 1654485..1655618 Methylococcus capsulatus str. Bath 3103053 YP_114009.1 CDS MCA1554 NC_002977.6 1655747 1655851 D hypothetical protein 1655747..1655851 Methylococcus capsulatus str. Bath 3103052 YP_114010.1 CDS sseA NC_002977.6 1655913 1656863 D identified by similarity to GP:6009981; match to protein family HMM PF00581; mercaptopyruvate sulfurtransferase 1655913..1656863 Methylococcus capsulatus str. Bath 3102214 YP_114011.1 CDS atpD NC_002977.6 1656884 1658260 D produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 1656884..1658260 Methylococcus capsulatus str. Bath 3102213 YP_114012.1 CDS MCA1557 NC_002977.6 1658257 1658664 D ATP synthase F1 subunit epsilon 1658257..1658664 Methylococcus capsulatus str. Bath 3102438 YP_114013.1 CDS MCA1559 NC_002977.6 1659314 1659940 R identified by similarity to GP:4731342; hypothetical protein complement(1659314..1659940) Methylococcus capsulatus str. Bath 3102437 YP_114014.1 CDS MCA1561 NC_002977.6 1660697 1661635 D identified by similarity to OMNI:NTL03PA03672; match to protein family HMM PF00005; ABC transporter ATP-binding protein 1660697..1661635 Methylococcus capsulatus str. Bath 3102893 YP_114015.1 CDS MCA1562 NC_002977.6 1661632 1662366 D ABC transporter permease 1661632..1662366 Methylococcus capsulatus str. Bath 3102892 YP_114016.1 CDS MCA1563 NC_002977.6 1662380 1664248 D identified by similarity to OMNI:NTL03PA03670; hypothetical protein 1662380..1664248 Methylococcus capsulatus str. Bath 3103130 YP_114017.1 CDS MCA1564 NC_002977.6 1664261 1665421 D identified by similarity to OMNI:NTL03PA04040; hypothetical protein 1664261..1665421 Methylococcus capsulatus str. Bath 3103129 YP_114018.1 CDS MCA1565 NC_002977.6 1665545 1665967 D identified by similarity to SP:P17724; hypothetical protein 1665545..1665967 Methylococcus capsulatus str. Bath 3104191 YP_114019.1 CDS moeA NC_002977.6 1666411 1667676 R identified by similarity to SP:P12281; match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis MoeA protein complement(1666411..1667676) Methylococcus capsulatus str. Bath 3104190 YP_114020.1 CDS MCA1568 NC_002977.6 1667774 1668037 R hypothetical protein complement(1667774..1668037) Methylococcus capsulatus str. Bath 3102621 YP_114021.1 CDS MCA1569 NC_002977.6 1668628 1670160 R identified by similarity to SP:P94547; match to protein family HMM PF00501; long-chain fatty acid CoA ligase complement(1668628..1670160) Methylococcus capsulatus str. Bath 3102620 YP_114022.1 CDS MCA1570 NC_002977.6 1670151 1670258 D hypothetical protein 1670151..1670258 Methylococcus capsulatus str. Bath 3104335 YP_114023.1 CDS MCA1573 NC_002977.6 1670779 1671048 D hypothetical protein 1670779..1671048 Methylococcus capsulatus str. Bath 3104334 YP_114024.1 CDS MCA1574 NC_002977.6 1671149 1672648 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; DEAD/DEAH box helicase 1671149..1672648 Methylococcus capsulatus str. Bath 3102628 YP_114025.1 CDS MCA1575 NC_002977.6 1672663 1673730 R identified by similarity to GP:17739984; match to protein family HMM PF00107; alcohol dehydrogenase complement(1672663..1673730) Methylococcus capsulatus str. Bath 3102627 YP_114026.1 CDS MCA1576 NC_002977.6 1673971 1676112 D identified by similarity to SP:P76577; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF06832; match to protein family HMM TIGR02073; penicillin-binding protein 1673971..1676112 Methylococcus capsulatus str. Bath 3104259 YP_114027.1 CDS MCA1577 NC_002977.6 1676119 1676694 R hypothetical protein complement(1676119..1676694) Methylococcus capsulatus str. Bath 3104258 YP_114028.1 CDS bgl NC_002977.6 1676709 1678061 R identified by similarity to SP:Q08638; match to protein family HMM PF00232; beta-glucosidase complement(1676709..1678061) Methylococcus capsulatus str. Bath 3105068 YP_114029.1 CDS MCA1579 NC_002977.6 1678089 1682327 R identified by similarity to SP:P30015; match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase complement(1678089..1682327) Methylococcus capsulatus str. Bath 3105067 YP_114030.1 CDS MCA1580 NC_002977.6 1682645 1683745 R identified by match to protein family HMM PF01609; ISMca1, transposase complement(1682645..1683745) Methylococcus capsulatus str. Bath 3103488 YP_114031.1 CDS MCA1581 NC_002977.6 1683735 1685036 D identified by match to protein family HMM PF00909; ammonium transporter 1683735..1685036 Methylococcus capsulatus str. Bath 3103487 YP_114032.1 CDS MCA1582 NC_002977.6 1685212 1685442 R hypothetical protein complement(1685212..1685442) Methylococcus capsulatus str. Bath 3104741 YP_114033.1 CDS MCA1583 NC_002977.6 1685536 1686954 D identified by match to protein family HMM PF00990; match to protein family HMM PF05231; match to protein family HMM TIGR00254; diguanylate cyclase 1685536..1686954 Methylococcus capsulatus str. Bath 3104740 YP_114034.1 CDS MCA1584 NC_002977.6 1686957 1687292 D hypothetical protein 1686957..1687292 Methylococcus capsulatus str. Bath 3102716 YP_114035.1 CDS MCA1585 NC_002977.6 1687294 1689645 R identified by similarity to GP:5257178; fatty acid cis/trans isomerase complement(1687294..1689645) Methylococcus capsulatus str. Bath 3102715 YP_114036.1 CDS MCA1586 NC_002977.6 1689904 1693314 D identified by similarity to GP:15978700; hypothetical protein 1689904..1693314 Methylococcus capsulatus str. Bath 3104909 YP_114037.1 CDS MCA1587 NC_002977.6 1693459 1695894 D identified by similarity to SP:Q9AEM9; match to protein family HMM PF03894; phosphoketolase 1693459..1695894 Methylococcus capsulatus str. Bath 3104908 YP_114038.1 CDS MCA1588 NC_002977.6 1695956 1696255 D hypothetical protein 1695956..1696255 Methylococcus capsulatus str. Bath 3102584 YP_114039.1 CDS ackA NC_002977.6 1696262 1697446 D identified by similarity to SP:P37877; match to protein family HMM PF00871; match to protein family HMM TIGR00016; acetate kinase 1696262..1697446 Methylococcus capsulatus str. Bath 3102583 YP_114040.1 CDS MCA1590 NC_002977.6 1697487 1698032 D identified by similarity to OMNI:NTL03PA00938; hypothetical protein 1697487..1698032 Methylococcus capsulatus str. Bath 3104942 YP_114041.1 CDS MCA1591 NC_002977.6 1698123 1698269 D hypothetical protein 1698123..1698269 Methylococcus capsulatus str. Bath 3104941 YP_114042.1 CDS rluA NC_002977.6 1698383 1699021 R identified by similarity to SP:P39219; match to protein family HMM PF00849; ribosomal large subunit pseudouridine synthase A complement(1698383..1699021) Methylococcus capsulatus str. Bath 3102819 YP_114043.1 CDS MCA1593 NC_002977.6 1699023 1699613 R identified by match to protein family HMM PF00565; nuclease-like protein complement(1699023..1699613) Methylococcus capsulatus str. Bath 3102818 YP_114044.1 CDS MCA1594 NC_002977.6 1699682 1699852 R hypothetical protein complement(1699682..1699852) Methylococcus capsulatus str. Bath 3102304 YP_114045.1 CDS MCA1595 NC_002977.6 1699953 1701515 D identified by similarity to GP:19716262; match to protein family HMM PF02321; match to protein family HMM TIGR01845; multidrug efflux system outer membrane subunit 1699953..1701515 Methylococcus capsulatus str. Bath 3102709 YP_114046.1 CDS MCA1596 NC_002977.6 1701580 1702695 D identified by similarity to OMNI:NTL03PA02493; match to protein family HMM PF00529; match to protein family HMM TIGR01730; HlyD family multidrug efflux protein 1701580..1702695 Methylococcus capsulatus str. Bath 3102708 YP_114047.1 CDS MCA1597 NC_002977.6 1702692 1705859 D identified by similarity to GP:1707645; match to protein family HMM TIGR00915; multidrug efflux transporter MexF 1702692..1705859 Methylococcus capsulatus str. Bath 3102203 YP_114048.1 CDS MCA1598 NC_002977.6 1705856 1706575 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1705856..1706575 Methylococcus capsulatus str. Bath 3103411 YP_114049.1 CDS MCA1599 NC_002977.6 1706633 1708147 D identified by similarity to GP:1345104; match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; serine protease MucD 1706633..1708147 Methylococcus capsulatus str. Bath 3103410 YP_114050.1 CDS hypC NC_002977.6 1708260 1708496 D identified by similarity to SP:P24191; match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase assembly chaperone HypC/HupF 1708260..1708496 Methylococcus capsulatus str. Bath 3102409 YP_114051.1 CDS hypA NC_002977.6 1708489 1708842 D identified by match to protein family HMM PF01155; match to protein family HMM TIGR00100; hydrogenase expression/formation protein HypA 1708489..1708842 Methylococcus capsulatus str. Bath 3103243 YP_114052.1 CDS hypB NC_002977.6 1708878 1709729 D identified by similarity to SP:P24190; match to protein family HMM PF02492; match to protein family HMM TIGR00073; hydrogenase nickel incorporation protein HypB 1708878..1709729 Methylococcus capsulatus str. Bath 3102408 YP_114053.1 CDS hypD NC_002977.6 1709742 1710842 D identified by match to protein family HMM PF01924; hydrogenase expression/formation protein HypD 1709742..1710842 Methylococcus capsulatus str. Bath 3102531 YP_114054.1 CDS hypF NC_002977.6 1710851 1713115 D identified by match to protein family HMM PF00708; match to protein family HMM PF00814; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143; [NiFe] hydrogenase maturation protein HypF 1710851..1713115 Methylococcus capsulatus str. Bath 3104635 YP_114055.1 CDS MCA1606 NC_002977.6 1714362 1715120 R hypothetical protein complement(1714362..1715120) Methylococcus capsulatus str. Bath 3102611 YP_114056.1 CDS MCA1608 NC_002977.6 1715782 1717269 D identified by similarity to OMNI:NTL01SS02515; hypothetical protein 1715782..1717269 Methylococcus capsulatus str. Bath 3102946 YP_114057.1 CDS MCA1610 NC_002977.6 1718510 1719103 R identified by similarity to OMNI:PG0277; ISMca6, transposase, OrfB complement(1718510..1719103) Methylococcus capsulatus str. Bath 3102245 YP_114058.1 CDS MCA1611 NC_002977.6 1719075 1719614 R identified by similarity to OMNI:PG0277; ISMca6, transposase, OrfA complement(1719075..1719614) Methylococcus capsulatus str. Bath 3102244 YP_114059.1 CDS MCA1612 NC_002977.6 1719957 1720355 D hypothetical protein 1719957..1720355 Methylococcus capsulatus str. Bath 3102132 YP_114060.1 CDS MCA1614 NC_002977.6 1721075 1721992 D identified by match to protein family HMM PF00313; match to protein family HMM PF01936; cold-shock DNA-binding domain-containing protein 1721075..1721992 Methylococcus capsulatus str. Bath 3102452 YP_114061.1 CDS MCA1615 NC_002977.6 1722320 1722913 R identified by similarity to GP:2346994; match to protein family HMM PF00239; match to protein family HMM PF02796; match to protein family HMM TIGR01199; resolvase site-specific recombinase complement(1722320..1722913) Methylococcus capsulatus str. Bath 3102902 YP_114062.1 CDS MCA1616 NC_002977.6 1723399 1724436 D identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; C-5 cytosine-specific DNA methylase 1723399..1724436 Methylococcus capsulatus str. Bath 3102713 YP_114063.1 CDS MCA1617 NC_002977.6 1724512 1725534 D hypothetical protein 1724512..1725534 Methylococcus capsulatus str. Bath 3102712 YP_114064.2 CDS vsr NC_002977.6 1725503 1725928 D identified by similarity to SP:P09184; DNA mismatch endonuclease, vsr 1725503..1725928 Methylococcus capsulatus str. Bath 3104736 YP_114065.1 CDS MCA1619 NC_002977.6 1725960 1726496 R identified by match to protein family HMM PF00089; trypsin domain-containing protein complement(1725960..1726496) Methylococcus capsulatus str. Bath 3103051 YP_114066.1 CDS MCA1620 NC_002977.6 1726574 1727662 R identified by match to protein family HMM PF00665; match to protein family HMM PF01527; ISMca4, transposase, OrfAB complement(1726574..1727662) Methylococcus capsulatus str. Bath 3103050 YP_114067.1 CDS MCA1622 NC_002977.6 1728264 1728545 D identified by similarity to SP:Q05459; match to protein family HMM PF04014; virulence-associated protein vagC 1728264..1728545 Methylococcus capsulatus str. Bath 3104822 YP_114068.1 CDS MCA1623 NC_002977.6 1728542 1728946 D identified by similarity to GP:20521538; match to protein family HMM PF01850; virulence associated protein VagD 1728542..1728946 Methylococcus capsulatus str. Bath 3104228 YP_114069.1 CDS MCA1625 NC_002977.6 1729204 1729773 R identified by similarity to OMNI:NTL01SS02064; match to protein family HMM PF05685; hypothetical protein complement(1729204..1729773) Methylococcus capsulatus str. Bath 3103977 YP_114070.1 CDS MCA1626 NC_002977.6 1729841 1730110 R identified by similarity to OMNI:NTL03PA05121; hypothetical protein complement(1729841..1730110) Methylococcus capsulatus str. Bath 3103976 YP_114071.1 CDS MCA1627 NC_002977.6 1730107 1730874 R identified by match to protein family HMM PF02146; Sir2 family transcriptional regulator complement(1730107..1730874) Methylococcus capsulatus str. Bath 3103179 YP_114072.1 CDS MCA1628 NC_002977.6 1730873 1731391 D hypothetical protein 1730873..1731391 Methylococcus capsulatus str. Bath 3102480 YP_114073.1 CDS MCA1629 NC_002977.6 1731972 1732154 D hypothetical protein 1731972..1732154 Methylococcus capsulatus str. Bath 3102479 YP_114074.1 CDS MCA1630 NC_002977.6 1732160 1733164 D identified by similarity to SP:P03004; match to protein family HMM PF00308; DnaA domain-containing protein 1732160..1733164 Methylococcus capsulatus str. Bath 3102686 YP_114075.1 CDS MCA1631 NC_002977.6 1733495 1734331 D hypothetical protein 1733495..1734331 Methylococcus capsulatus str. Bath 3103909 YP_114076.1 CDS MCA1632 NC_002977.6 1734319 1736667 D identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein 1734319..1736667 Methylococcus capsulatus str. Bath 3103908 YP_114077.1 CDS MCA1633 NC_002977.6 1736668 1737888 R identified by similarity to OMNI:DR1127; match to protein family HMM PF05816; hypothetical protein complement(1736668..1737888) Methylococcus capsulatus str. Bath 3102590 YP_114078.1 CDS nrdA NC_002977.6 1738094 1741003 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1738094..1741003 Methylococcus capsulatus str. Bath 3104511 YP_114079.1 CDS MCA1635 NC_002977.6 1741116 1741535 D hypothetical protein 1741116..1741535 Methylococcus capsulatus str. Bath 3104634 YP_114080.1 CDS MCA1636 NC_002977.6 1741571 1742125 D identified by similarity to OMNI:NTL03PA00423; match to protein family HMM PF01292; hypothetical protein 1741571..1742125 Methylococcus capsulatus str. Bath 3102642 YP_114081.1 CDS nrdB NC_002977.6 1742181 1743392 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 1742181..1743392 Methylococcus capsulatus str. Bath 3102641 YP_114082.1 CDS MCA1638 NC_002977.6 1743508 1743918 D identified by similarity to OMNI:NTL01XF01460; match to protein family HMM PF04892; hypothetical protein 1743508..1743918 Methylococcus capsulatus str. Bath 3103598 YP_114083.1 CDS MCA1639 NC_002977.6 1743845 1744921 R identified by match to protein family HMM PF00487; fatty acid desaturase complement(1743845..1744921) Methylococcus capsulatus str. Bath 3103842 YP_114084.1 CDS MCA1640 NC_002977.6 1745002 1746780 D identified by similarity to SP:P55474; match to protein family HMM PF02543; nodulation protein nolNO 1745002..1746780 Methylococcus capsulatus str. Bath 3103841 YP_114085.1 CDS MCA1641 NC_002977.6 1746786 1748741 D identified by similarity to GP:17431966; hypothetical protein 1746786..1748741 Methylococcus capsulatus str. Bath 3102939 YP_114086.1 CDS MCA1642 NC_002977.6 1748848 1749054 D identified by similarity to SP:Q51647; IS3 family transposase 1748848..1749054 Methylococcus capsulatus str. Bath 3103759 YP_114087.1 CDS MCA1643 NC_002977.6 1749200 1750177 R identified by match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase complement(1749200..1750177) Methylococcus capsulatus str. Bath 3103758 YP_114088.1 CDS bolA NC_002977.6 1750177 1750464 R identified by similarity to SP:P15298; match to protein family HMM PF01722; bolA protein complement(1750177..1750464) Methylococcus capsulatus str. Bath 3104202 YP_114089.1 CDS MCA1645 NC_002977.6 1750461 1750763 R identified by similarity to OMNI:NTL03PA03202; match to protein family HMM PF03795; hypothetical protein complement(1750461..1750763) Methylococcus capsulatus str. Bath 3102267 YP_114090.1 CDS ispZ NC_002977.6 1750767 1751300 R identified by similarity to SP:P95745; match to protein family HMM PF04279; match to protein family HMM TIGR00997; intracellular septation protein A complement(1750767..1751300) Methylococcus capsulatus str. Bath 3102266 YP_114091.1 CDS MCA1647 NC_002977.6 1751499 1751810 D identified by similarity to OMNI:NTL03PA03440; hypothetical protein 1751499..1751810 Methylococcus capsulatus str. Bath 3102192 YP_114092.1 CDS gloA NC_002977.6 1751807 1752199 R identified by match to protein family HMM PF00903; match to protein family HMM TIGR00068; lactoylglutathione lyase complement(1751807..1752199) Methylococcus capsulatus str. Bath 3104450 YP_114093.1 CDS MCA1650 NC_002977.6 1753427 1755886 D identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein 1753427..1755886 Methylococcus capsulatus str. Bath 3104449 YP_114094.1 CDS MCA1651 NC_002977.6 1755908 1756276 R hypothetical protein complement(1755908..1756276) Methylococcus capsulatus str. Bath 3102681 YP_114095.1 CDS pgpA NC_002977.6 1756335 1756838 R identified by similarity to SP:P18200; match to protein family HMM PF04608; phosphatidylglycerophosphatase A complement(1756335..1756838) Methylococcus capsulatus str. Bath 3102680 YP_114096.1 CDS thiL NC_002977.6 1756835 1757812 R identified by similarity to SP:P77785; match to protein family HMM PF02769; match to protein family HMM TIGR01379; thiamine-monophosphate kinase complement(1756835..1757812) Methylococcus capsulatus str. Bath 3104761 YP_114097.1 CDS nusB NC_002977.6 1757827 1758423 R identified by similarity to SP:P04381; match to protein family HMM PF01029; match to protein family HMM TIGR01951; N utilization substance protein B complement(1757827..1758423) Methylococcus capsulatus str. Bath 3102427 YP_114098.1 CDS ribE NC_002977.6 1758420 1758899 R identified by similarity to SP:P45149; match to protein family HMM PF00885; match to protein family HMM TIGR00114; 6,7-dimethyl-8-ribityllumazine synthase complement(1758420..1758899) Methylococcus capsulatus str. Bath 3102426 YP_114099.1 CDS ribBA NC_002977.6 1758912 1760027 R identified by similarity to SP:P17620; match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00506; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(1758912..1760027) Methylococcus capsulatus str. Bath 3103337 YP_114100.1 CDS ribE-1 NC_002977.6 1760024 1760683 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(1760024..1760683) Methylococcus capsulatus str. Bath 3102885 YP_114101.1 CDS ribD NC_002977.6 1760717 1761853 R identified by similarity to SP:P25539; match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD complement(1760717..1761853) Methylococcus capsulatus str. Bath 3102634 YP_114102.1 CDS nrdR NC_002977.6 1761869 1762366 R identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR complement(1761869..1762366) Methylococcus capsulatus str. Bath 3102673 YP_114103.1 CDS glyA NC_002977.6 1762420 1763676 R identified by similarity to SP:P06192; match to protein family HMM PF00464; serine hydroxymethyltransferase complement(1762420..1763676) Methylococcus capsulatus str. Bath 3102672 YP_114104.1 CDS MCA1661 NC_002977.6 1763806 1765674 R identified by similarity to SP:P39216; match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein complement(1763806..1765674) Methylococcus capsulatus str. Bath 3102184 YP_114105.1 CDS MCA1662 NC_002977.6 1765827 1767113 R ABC transporter substrate-binding protein complement(1765827..1767113) Methylococcus capsulatus str. Bath 3105091 YP_114106.1 CDS MCA1663 NC_002977.6 1767149 1767475 R identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; anti-anti-sigma factor family protein complement(1767149..1767475) Methylococcus capsulatus str. Bath 3105090 YP_114107.1 CDS MCA1664 NC_002977.6 1767512 1769254 R identified by match to protein family HMM PF00860; xanthine/uracil permease complement(1767512..1769254) Methylococcus capsulatus str. Bath 3102383 YP_114108.1 CDS MCA1665 NC_002977.6 1769251 1769967 R identified by match to protein family HMM PF00484; carbonic anhydrase complement(1769251..1769967) Methylococcus capsulatus str. Bath 3102303 YP_114109.1 CDS MCA1666 NC_002977.6 1770110 1770538 D identified by match to protein family HMM PF02518; sensor histidine kinase 1770110..1770538 Methylococcus capsulatus str. Bath 3102302 YP_114110.1 CDS pdxJ NC_002977.6 1771085 1771828 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1771085..1771828 Methylococcus capsulatus str. Bath 3104713 YP_114111.1 CDS MCA1668 NC_002977.6 1772145 1772852 D hypothetical protein 1772145..1772852 Methylococcus capsulatus str. Bath 3102116 YP_114112.1 CDS MCA1669 NC_002977.6 1772860 1773942 D identified by match to protein family HMM PF01207; match to protein family HMM TIGR00742; tRNA-dihydrouridine synthase A 1772860..1773942 Methylococcus capsulatus str. Bath 3102115 YP_114113.1 CDS folE NC_002977.6 1773965 1774522 D identified by similarity to SP:Q54769; match to protein family HMM PF01227; match to protein family HMM TIGR00063; GTP cyclohydrolase I 1773965..1774522 Methylococcus capsulatus str. Bath 3102440 YP_114114.1 CDS hemH NC_002977.6 1774527 1775504 D identified by similarity to SP:P23871; match to protein family HMM PF00762; match to protein family HMM TIGR00109; ferrochelatase 1774527..1775504 Methylococcus capsulatus str. Bath 3102904 YP_114115.1 CDS MCA1672 NC_002977.6 1775563 1777842 D identified by similarity to SP:P02919; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02071; penicillin-binding protein 1775563..1777842 Methylococcus capsulatus str. Bath 3102903 YP_114116.1 CDS MCA1673 NC_002977.6 1777907 1781947 R identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein complement(1777907..1781947) Methylococcus capsulatus str. Bath 3104024 YP_114117.1 CDS MCA1674 NC_002977.6 1782007 1784097 R identified by similarity to SP:P39216; match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein complement(1782007..1784097) Methylococcus capsulatus str. Bath 3104023 YP_114118.1 CDS MCA1675 NC_002977.6 1784303 1786018 R identified by match to protein family HMM PF00664; ABC transporter permease complement(1784303..1786018) Methylococcus capsulatus str. Bath 3105007 YP_114119.1 CDS hypE NC_002977.6 1786202 1787053 R identified by similarity to SP:P40595; match to protein family HMM PF02769; match to protein family HMM TIGR02124; hydrogenase expression/formation protein HypE complement(1786202..1787053) Methylococcus capsulatus str. Bath 3102202 YP_114120.1 CDS glnA NC_002977.6 1787772 1789181 R identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase complement(1787772..1789181) Methylococcus capsulatus str. Bath 3103018 YP_114121.1 CDS MCA1678 NC_002977.6 1789349 1790269 R identified by match to protein family HMM PF00293; match to protein family HMM TIGR00586; hypothetical protein complement(1789349..1790269) Methylococcus capsulatus str. Bath 3103017 YP_114122.1 CDS argJ NC_002977.6 1790307 1791533 R bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase complement(1790307..1791533) Methylococcus capsulatus str. Bath 3103846 YP_114123.1 CDS secA NC_002977.6 1791517 1794045 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(1791517..1794045) Methylococcus capsulatus str. Bath 3103845 YP_114124.1 CDS uvrC NC_002977.6 1794329 1796209 D identified by similarity to SP:P07028; match to protein family HMM PF01541; match to protein family HMM PF02151; match to protein family HMM TIGR00194; excinuclease ABC subunit C 1794329..1796209 Methylococcus capsulatus str. Bath 3103453 YP_114125.1 CDS pgsA NC_002977.6 1796213 1796782 D identified by similarity to SP:P06978; match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1796213..1796782 Methylococcus capsulatus str. Bath 3103452 YP_114126.1 CDS MCA1683 NC_002977.6 1796796 1799357 R identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF07228; match to protein family HMM TIGR00229; sensory box protein complement(1796796..1799357) Methylococcus capsulatus str. Bath 3103290 YP_114127.1 CDS MCA1684 NC_002977.6 1799354 1802722 R identified by similarity to GP:11830835; match to protein family HMM PF05088; hypothetical protein complement(1799354..1802722) Methylococcus capsulatus str. Bath 3103289 YP_114128.1 CDS MCA1685 NC_002977.6 1802742 1803170 R identified by similarity to SP:P17904; match to protein family HMM PF02518; anti-sigma B factor complement(1802742..1803170) Methylococcus capsulatus str. Bath 3103272 YP_114129.1 CDS MCA1686 NC_002977.6 1803184 1803519 R identified by similarity to SP:P10727; match to protein family HMM PF01740; match to protein family HMM TIGR00377; anti-sigma B factor antagonist complement(1803184..1803519) Methylococcus capsulatus str. Bath 3103271 YP_114130.1 CDS MCA1687 NC_002977.6 1803609 1805249 R identified by similarity to GP:17740495; match to protein family HMM PF01935; hypothetical protein complement(1803609..1805249) Methylococcus capsulatus str. Bath 3103595 YP_114131.1 CDS MCA1688 NC_002977.6 1805248 1806759 D hypothetical protein 1805248..1806759 Methylococcus capsulatus str. Bath 3102072 YP_114132.1 CDS MCA1689 NC_002977.6 1806743 1807819 D hypothetical protein 1806743..1807819 Methylococcus capsulatus str. Bath 3102071 YP_114133.1 CDS mepA NC_002977.6 1807827 1808666 D D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase 1807827..1808666 Methylococcus capsulatus str. Bath 3102915 YP_114134.1 CDS miaA NC_002977.6 1808868 1809806 R identified by similarity to SP:P16384; match to protein family HMM PF01715; match to protein family HMM TIGR00174; tRNA delta(2)-isopentenylpyrophosphate transferase complement(1808868..1809806) Methylococcus capsulatus str. Bath 3102914 YP_114135.1 CDS mutL NC_002977.6 1809803 1811638 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(1809803..1811638) Methylococcus capsulatus str. Bath 3102684 YP_114136.1 CDS MCA1693 NC_002977.6 1811730 1812335 R hypothetical protein complement(1811730..1812335) Methylococcus capsulatus str. Bath 3102683 YP_114137.1 CDS trxB NC_002977.6 1812382 1813335 R identified by similarity to SP:P09625; match to protein family HMM PF00070; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase complement(1812382..1813335) Methylococcus capsulatus str. Bath 3102198 YP_114138.1 CDS MCA1695 NC_002977.6 1813318 1815852 D identified by similarity to SP:P46889; match to protein family HMM PF01580; DNA translocase FtsK 1813318..1815852 Methylococcus capsulatus str. Bath 3102721 YP_114139.1 CDS MCA1696 NC_002977.6 1815869 1816363 R identified by similarity to OMNI:VC0849; match to protein family HMM PF03364; hypothetical protein complement(1815869..1816363) Methylococcus capsulatus str. Bath 3104046 YP_114140.1 CDS MCA1697 NC_002977.6 1816642 1817178 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA complement(1816642..1817178) Methylococcus capsulatus str. Bath 3104045 YP_114141.1 CDS MCA1698 NC_002977.6 1817204 1817353 R hypothetical protein complement(1817204..1817353) Methylococcus capsulatus str. Bath 3103680 YP_114142.1 CDS MCA1699 NC_002977.6 1817329 1817541 R hypothetical protein complement(1817329..1817541) Methylococcus capsulatus str. Bath 3103679 YP_114143.1 CDS MCA1700 NC_002977.6 1817579 1819030 R transporter complement(1817579..1819030) Methylococcus capsulatus str. Bath 3102348 YP_114144.1 CDS MCA1701 NC_002977.6 1819114 1820304 R hypothetical protein complement(1819114..1820304) Methylococcus capsulatus str. Bath 3102347 YP_114145.1 CDS groEL-3 NC_002977.6 1821661 1823289 R identified by similarity to SP:P06139; match to protein family HMM PF00118; chaperonin, 60 kDa subunit complement(1821661..1823289) Methylococcus capsulatus str. Bath 3103312 YP_114146.1 CDS groES-2 NC_002977.6 1823333 1823623 R identified by similarity to SP:P26879; match to protein family HMM PF00166; chaperonin, 10 kDa subunit complement(1823333..1823623) Methylococcus capsulatus str. Bath 3103311 YP_114147.1 CDS MCA1707 NC_002977.6 1824241 1824429 D hypothetical protein 1824241..1824429 Methylococcus capsulatus str. Bath 3104572 YP_114148.1 CDS MCA1709 NC_002977.6 1825162 1825551 R identified by similarity to GP:2645861; IS3 family transposase complement(1825162..1825551) Methylococcus capsulatus str. Bath 3102839 YP_114149.1 CDS MCA1710 NC_002977.6 1825775 1826569 D hypothetical protein 1825775..1826569 Methylococcus capsulatus str. Bath 3102186 YP_114150.1 CDS MCA1711 NC_002977.6 1826597 1827907 D identified by similarity to GP:15024215; match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; hypothetical protein 1826597..1827907 Methylococcus capsulatus str. Bath 3102185 YP_114151.1 CDS MCA1712 NC_002977.6 1827861 1828565 R role in sulfur assimilation; sulfate transport protein CysZ complement(1827861..1828565) Methylococcus capsulatus str. Bath 3102076 YP_114152.1 CDS MCA1713 NC_002977.6 1828656 1830038 R identified by similarity to OMNI:NTL01ST2559; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199; sigma-54 dependent DNA-binding response regulator complement(1828656..1830038) Methylococcus capsulatus str. Bath 3102781 YP_114153.1 CDS MCA1714 NC_002977.6 1830058 1830627 R identified by similarity to GP:8996050; surface protein-like protein complement(1830058..1830627) Methylococcus capsulatus str. Bath 3102780 YP_114154.1 CDS MCA1715 NC_002977.6 1830620 1832173 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(1830620..1832173) Methylococcus capsulatus str. Bath 3104818 YP_114155.1 CDS MCA1716 NC_002977.6 1832201 1833070 R Catalyzes the formation of PRPP from ATP and ribose 5-phosphate; phosphoribosylpyrophosphate synthetase complement(1832201..1833070) Methylococcus capsulatus str. Bath 3104817 YP_114156.1 CDS MCA1717 NC_002977.6 1833082 1834632 R catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine; thymidine phosphorylase complement(1833082..1834632) Methylococcus capsulatus str. Bath 3102436 YP_114157.1 CDS MCA1718 NC_002977.6 1835070 1835702 D identified by similarity to GP:17430498; hypothetical protein 1835070..1835702 Methylococcus capsulatus str. Bath 3102088 YP_114158.1 CDS MCA1719 NC_002977.6 1835722 1836477 R hypothetical protein complement(1835722..1836477) Methylococcus capsulatus str. Bath 3102087 YP_114159.1 CDS MCA1720 NC_002977.6 1836456 1837106 D hypothetical protein 1836456..1837106 Methylococcus capsulatus str. Bath 3102321 YP_114160.1 CDS MCA1721 NC_002977.6 1837165 1838460 D identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 1837165..1838460 Methylococcus capsulatus str. Bath 3102320 YP_114161.1 CDS MCA1722 NC_002977.6 1838485 1841634 D AcrB/AcrD/AcrF family protein 1838485..1841634 Methylococcus capsulatus str. Bath 3105057 YP_114162.1 CDS MCA1723 NC_002977.6 1841631 1842941 D identified by similarity to OMNI:CC1318; match to protein family HMM PF02321; outer membrane efflux protein 1841631..1842941 Methylococcus capsulatus str. Bath 3105056 YP_114163.1 CDS MCA1724 NC_002977.6 1842959 1843543 R identified by match to protein family HMM PF01914; MarC family integral membrane protein complement(1842959..1843543) Methylococcus capsulatus str. Bath 3104854 YP_114164.1 CDS MCA1725 NC_002977.6 1843589 1844713 R identified by similarity to GP:2935166; match to protein family HMM PF00089; match to protein family HMM PF00595; serine protease complement(1843589..1844713) Methylococcus capsulatus str. Bath 3104853 YP_114165.1 CDS MCA1726 NC_002977.6 1844703 1845692 D hypothetical protein 1844703..1845692 Methylococcus capsulatus str. Bath 3104616 YP_114166.1 CDS cbpA NC_002977.6 1845689 1846615 R identified by similarity to SP:P36659; match to protein family HMM PF00226; match to protein family HMM PF01556; curved DNA-binding protein complement(1845689..1846615) Methylococcus capsulatus str. Bath 3105052 YP_114167.1 CDS MCA1728 NC_002977.6 1846661 1847494 R identified by similarity to GP:19916878; match to protein family HMM PF02535; ZIP zinc transporter family protein complement(1846661..1847494) Methylococcus capsulatus str. Bath 3103280 YP_114168.1 CDS MCA1729 NC_002977.6 1847491 1847988 R identified by similarity to GP:19914581; match to protein family HMM PF06803; hypothetical protein complement(1847491..1847988) Methylococcus capsulatus str. Bath 3103279 YP_114169.1 CDS MCA1730 NC_002977.6 1848051 1848500 D identified by match to protein family HMM PF00011; HSP20 family protein 1848051..1848500 Methylococcus capsulatus str. Bath 3102574 YP_114170.1 CDS MCA1731 NC_002977.6 1848521 1848901 D identified by match to protein family HMM PF00011; HSP20 family protein 1848521..1848901 Methylococcus capsulatus str. Bath 3102573 YP_114171.1 CDS MCA1732 NC_002977.6 1848980 1849483 D identified by match to protein family HMM PF00011; HSP20 family protein 1848980..1849483 Methylococcus capsulatus str. Bath 3103055 YP_114172.1 CDS MCA1733 NC_002977.6 1849518 1850192 D hypothetical protein 1849518..1850192 Methylococcus capsulatus str. Bath 3103054 YP_114173.1 CDS alr NC_002977.6 1850205 1851284 R identified by similarity to SP:P06655; match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492; alanine racemase complement(1850205..1851284) Methylococcus capsulatus str. Bath 3102895 YP_114174.1 CDS dnaB NC_002977.6 1851288 1852673 R identified by similarity to SP:P37469; match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665; replicative DNA helicase complement(1851288..1852673) Methylococcus capsulatus str. Bath 3104137 YP_114175.1 CDS rfaE NC_002977.6 1852685 1854106 R catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(1852685..1854106) Methylococcus capsulatus str. Bath 3102434 YP_114176.1 CDS pip NC_002977.6 1854183 1855133 R identified by similarity to SP:P52279; match to protein family HMM PF00561; match to protein family HMM TIGR01249; proline iminopeptidase complement(1854183..1855133) Methylococcus capsulatus str. Bath 3102433 YP_114177.1 CDS MCA1738 NC_002977.6 1855211 1856134 R hypothetical protein complement(1855211..1856134) Methylococcus capsulatus str. Bath 3102821 YP_114178.1 CDS MCA1739 NC_002977.6 1856611 1857573 D identified by similarity to SP:P77770; citrate lyase subunit beta 1856611..1857573 Methylococcus capsulatus str. Bath 3102820 YP_114179.1 CDS sucC-2 NC_002977.6 1857628 1858797 D identified by similarity to SP:P80886; match to protein family HMM PF00549; match to protein family HMM PF02222; match to protein family HMM TIGR01016; succinyl-CoA synthetase subunit beta 1857628..1858797 Methylococcus capsulatus str. Bath 3104196 YP_114180.1 CDS sucD-2 NC_002977.6 1858803 1859705 D identified by similarity to SP:P80865; match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019; succinyl-CoA synthetase subunit alpha 1858803..1859705 Methylococcus capsulatus str. Bath 3104195 YP_114181.1 CDS MCA1742 NC_002977.6 1859776 1860096 D identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein 1859776..1860096 Methylococcus capsulatus str. Bath 3102533 YP_114182.1 CDS dtD NC_002977.6 1860098 1860559 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 1860098..1860559 Methylococcus capsulatus str. Bath 3102532 YP_114183.1 CDS MCA1744 NC_002977.6 1860615 1861463 D identified by similarity to GP:1652538; match to protein family HMM PF00583; acetyltransferase 1860615..1861463 Methylococcus capsulatus str. Bath 3104456 YP_114184.1 CDS MCA1745 NC_002977.6 1861552 1862535 D identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737; hypothetical protein 1861552..1862535 Methylococcus capsulatus str. Bath 3104455 YP_114185.1 CDS fis NC_002977.6 1862532 1862822 D identified by similarity to SP:P11028; match to protein family HMM PF02954; match to protein family HMM TIGR01199; DNA-binding protein Fis 1862532..1862822 Methylococcus capsulatus str. Bath 3103600 YP_114186.1 CDS purH NC_002977.6 1862857 1864419 D identified by match to protein family HMM PF01808; match to protein family HMM PF02142; match to protein family HMM TIGR00355; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1862857..1864419 Methylococcus capsulatus str. Bath 3103599 YP_114187.1 CDS MCA1748 NC_002977.6 1864425 1865624 D identified by match to protein family HMM PF00037; match to protein family HMM PF02754; iron-sulfur cluster binding protein 1864425..1865624 Methylococcus capsulatus str. Bath 3102444 YP_114188.1 CDS speD NC_002977.6 1865689 1866528 R S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase complement(1865689..1866528) Methylococcus capsulatus str. Bath 3102622 YP_114189.1 CDS MCA1750 NC_002977.6 1866582 1866998 R identified by similarity to OMNI:NTL03PA00654; match to protein family HMM PF02566; OsmC/Ohr family protein complement(1866582..1866998) Methylococcus capsulatus str. Bath 3104038 YP_114190.1 CDS MCA1751 NC_002977.6 1867250 1867948 D hypothetical protein 1867250..1867948 Methylococcus capsulatus str. Bath 3104037 YP_114191.1 CDS MCA1752 NC_002977.6 1868033 1873798 D identified by similarity to SP:Q8YM40; match to protein family HMM PF01835; hypothetical protein 1868033..1873798 Methylococcus capsulatus str. Bath 3102519 YP_114192.1 CDS MCA1753 NC_002977.6 1874323 1874748 R lipoprotein complement(1874323..1874748) Methylococcus capsulatus str. Bath 3102144 YP_114193.1 CDS MCA1754 NC_002977.6 1874827 1876044 R identified by match to protein family HMM PF01360; match to protein family HMM TIGR01988; FAD-binding monooxygenase complement(1874827..1876044) Methylococcus capsulatus str. Bath 3102143 YP_114194.1 CDS MCA1755 NC_002977.6 1876078 1876620 R hypothetical protein complement(1876078..1876620) Methylococcus capsulatus str. Bath 3104412 YP_114195.1 CDS gabD NC_002977.6 1876907 1878382 D identified by similarity to SP:P25526; match to protein family HMM PF00171; match to protein family HMM TIGR01780; succinate-semialdehyde dehydrogenase 1876907..1878382 Methylococcus capsulatus str. Bath 3103308 YP_114196.1 CDS MCA1757 NC_002977.6 1878485 1882411 D identified by similarity to GP:17427464; match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913; oxidoreductase 1878485..1882411 Methylococcus capsulatus str. Bath 3103307 YP_114197.1 CDS MCA1758 NC_002977.6 1882820 1883851 D identified by similarity to GP:16504642; hypothetical protein 1882820..1883851 Methylococcus capsulatus str. Bath 3103455 YP_114198.1 CDS MCA1759 NC_002977.6 1883730 1884626 R identified by match to protein family HMM PF00582; universal stress protein complement(1883730..1884626) Methylococcus capsulatus str. Bath 3103454 YP_114199.1 CDS MCA1760 NC_002977.6 1884699 1886663 R identified by similarity to GP:17427424; match to protein family HMM PF02080; match to protein family HMM PF02254; sodium/hydrogen exchanger family protein complement(1884699..1886663) Methylococcus capsulatus str. Bath 3103647 YP_114200.1 CDS MCA1761 NC_002977.6 1886755 1889514 R identified by similarity to SP:P37367; match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation-transporting ATPase complement(1886755..1889514) Methylococcus capsulatus str. Bath 3102448 YP_114201.1 CDS MCA1762 NC_002977.6 1889582 1891027 R transporter complement(1889582..1891027) Methylococcus capsulatus str. Bath 3102447 YP_114202.1 CDS MCA1763 NC_002977.6 1891277 1892545 R identified by similarity to OMNI:VC1941; hypothetical protein complement(1891277..1892545) Methylococcus capsulatus str. Bath 3103126 YP_114203.1 CDS MCA1764 NC_002977.6 1892803 1893477 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1892803..1893477 Methylococcus capsulatus str. Bath 3103125 YP_114204.1 CDS MCA1765 NC_002977.6 1893470 1894870 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 1893470..1894870 Methylococcus capsulatus str. Bath 3104563 YP_114205.1 CDS MCA1766 NC_002977.6 1894931 1896061 D identified by similarity to SP:P13510; match to protein family HMM TIGR01730; heavy metal efflux system protein 1894931..1896061 Methylococcus capsulatus str. Bath 3102635 YP_114206.1 CDS MCA1767 NC_002977.6 1896072 1899173 D identified by match to protein family HMM TIGR00914; CzcA family heavy metal efflux protein 1896072..1899173 Methylococcus capsulatus str. Bath 3102930 YP_114207.1 CDS MCA1768 NC_002977.6 1899170 1900474 D identified by similarity to OMNI:CC2721; match to protein family HMM PF02321; outer membrane heavy metal efflux protein 1899170..1900474 Methylococcus capsulatus str. Bath 3102929 YP_114208.1 CDS MCA1769 NC_002977.6 1900555 1901823 R identified by similarity to GP:19916924; match to protein family HMM PF03150; cytochrome c peroxidase complement(1900555..1901823) Methylococcus capsulatus str. Bath 3104231 YP_114209.1 CDS MCA1771 NC_002977.6 1902159 1902497 R hypothetical protein complement(1902159..1902497) Methylococcus capsulatus str. Bath 3104230 YP_114210.1 CDS MCA1772 NC_002977.6 1902625 1904115 D identified by similarity to GP:19918600; match to protein family HMM PF01943; polysaccharide biosynthesis protein 1902625..1904115 Methylococcus capsulatus str. Bath 3105011 YP_114211.1 CDS MCA1773 NC_002977.6 1904278 1904373 D hypothetical protein 1904278..1904373 Methylococcus capsulatus str. Bath 3105010 YP_114212.1 CDS MCA1774 NC_002977.6 1904432 1904860 D identified by match to protein family HMM PF00582; universal stress protein 1904432..1904860 Methylococcus capsulatus str. Bath 3104670 YP_114213.1 CDS MCA1775 NC_002977.6 1904911 1905729 D cytochrome c family protein 1904911..1905729 Methylococcus capsulatus str. Bath 3102612 YP_114214.1 CDS aspS NC_002977.6 1906356 1908155 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(1906356..1908155) Methylococcus capsulatus str. Bath 3102265 YP_114215.1 CDS MCA1777 NC_002977.6 1908228 1908506 R identified by similarity to GP:7799507; hypothetical protein complement(1908228..1908506) Methylococcus capsulatus str. Bath 3102264 YP_114216.1 CDS MCA1778 NC_002977.6 1908712 1909683 D identified by match to protein family HMM PF02628; cytochrome oxidase assembly protein 1908712..1909683 Methylococcus capsulatus str. Bath 3103215 YP_114217.1 CDS MCA1779 NC_002977.6 1909668 1910381 R identified by similarity to OMNI:NTL03PA04279; hypothetical protein complement(1909668..1910381) Methylococcus capsulatus str. Bath 3103214 YP_114218.1 CDS MCA1780 NC_002977.6 1910378 1911118 R type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase complement(1910378..1911118) Methylococcus capsulatus str. Bath 3102249 YP_114219.1 CDS birA NC_002977.6 1911115 1912110 R identified by similarity to SP:P06709; match to protein family HMM PF03099; match to protein family HMM TIGR00121; biotin-(acetyl-CoA carboxylase) ligase complement(1911115..1912110) Methylococcus capsulatus str. Bath 3102248 YP_114220.1 CDS MCA1782 NC_002977.6 1912107 1913414 R identified by similarity to GP:9948679; match to protein family HMM PF00004; recombination factor protein RarA complement(1912107..1913414) Methylococcus capsulatus str. Bath 3102211 YP_114221.1 CDS lolA NC_002977.6 1913421 1914047 R identified by match to protein family HMM PF03548; match to protein family HMM TIGR00547; outer membrane lipoprotein carrier protein LolA complement(1913421..1914047) Methylococcus capsulatus str. Bath 3102851 YP_114222.1 CDS purB NC_002977.6 1914052 1915413 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1914052..1915413) Methylococcus capsulatus str. Bath 3102876 YP_114223.1 CDS trmU NC_002977.6 1915436 1916551 R identified by similarity to SP:P25745; match to protein family HMM PF03054; match to protein family HMM TIGR00420; tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase complement(1915436..1916551) Methylococcus capsulatus str. Bath 3102875 YP_114224.1 CDS MCA1786 NC_002977.6 1916559 1917035 R identified by similarity to OMNI:NTL03PA02625; match to protein family HMM PF00293; MutT/nudix family protein complement(1916559..1917035) Methylococcus capsulatus str. Bath 3103712 YP_114225.1 CDS MCA1787 NC_002977.6 1917145 1917894 D hypothetical protein 1917145..1917894 Methylococcus capsulatus str. Bath 3103711 YP_114226.1 CDS MCA1788 NC_002977.6 1917969 1918289 D identified by similarity to OMNI:CC2467; match to protein family HMM PF02617; ATP-dependent Clp protease adaptor protein ClpS 1917969..1918289 Methylococcus capsulatus str. Bath 3103830 YP_114227.1 CDS clpA NC_002977.6 1918320 1920590 D identified by similarity to SP:P15716; match to protein family HMM PF00004; match to protein family HMM PF02861; ATP-dependent Clp protease ATP-binding subunit ClpA 1918320..1920590 Methylococcus capsulatus str. Bath 3103829 YP_114228.1 CDS infA NC_002977.6 1920603 1920821 R identified by similarity to SP:P02998; match to protein family HMM PF00575; match to protein family HMM TIGR00008; translation initiation factor IF-1 complement(1920603..1920821) Methylococcus capsulatus str. Bath 3104980 YP_114229.1 CDS MCA1791 NC_002977.6 1920850 1921551 R Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase complement(1920850..1921551) Methylococcus capsulatus str. Bath 3102602 YP_114230.1 CDS aat NC_002977.6 1921575 1922282 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase complement(1921575..1922282) Methylococcus capsulatus str. Bath 3102601 YP_114231.1 CDS MCA1793 NC_002977.6 1922276 1923424 R identified by similarity to OMNI:NTL03PA03230; match to protein family HMM PF04339; hypothetical protein complement(1922276..1923424) Methylococcus capsulatus str. Bath 3103421 YP_114232.1 CDS MCA1794 NC_002977.6 1923514 1925181 D ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein 1923514..1925181 Methylococcus capsulatus str. Bath 3103420 YP_114233.1 CDS MCA1795 NC_002977.6 1925216 1926070 D identified by similarity to GP:17429855; match to protein family HMM PF05673; hypothetical protein 1925216..1926070 Methylococcus capsulatus str. Bath 3103577 YP_114234.1 CDS pmoB NC_002977.6 1926197 1927441 R identified by similarity to GP:1913913; methane monooxygenase subunit B complement(1926197..1927441) Methylococcus capsulatus str. Bath 3103576 YP_114235.1 CDS pmoA NC_002977.6 1927548 1928291 R identified by similarity to GP:1913912; match to protein family HMM PF02461; methane monooxygenase subunit A complement(1927548..1928291) Methylococcus capsulatus str. Bath 3104301 YP_114236.1 CDS pmoC1 NC_002977.6 1928445 1929227 R identified by similarity to GP:1894818; match to protein family HMM PF04896; methane monooxygenase subunit C complement(1928445..1929227) Methylococcus capsulatus str. Bath 3104300 YP_114237.1 CDS MCA1799 NC_002977.6 1929583 1929882 D identified by similarity to SP:Q06529; cytochrome c family protein 1929583..1929882 Methylococcus capsulatus str. Bath 3104266 YP_114238.1 CDS MCA1800 NC_002977.6 1929924 1931150 D identified by similarity to GP:19879585; oxidoreductase 1929924..1931150 Methylococcus capsulatus str. Bath 3104265 YP_114239.1 CDS MCA1801 NC_002977.6 1931144 1932274 R identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein complement(1931144..1932274) Methylococcus capsulatus str. Bath 3102788 YP_114240.1 CDS MCA1802 NC_002977.6 1932300 1932950 R hypothetical protein complement(1932300..1932950) Methylococcus capsulatus str. Bath 3102787 YP_114241.1 CDS MCA1803 NC_002977.6 1933022 1933741 D identified by match to protein family HMM PF01738; dienelactone hydrolase 1933022..1933741 Methylococcus capsulatus str. Bath 3102630 YP_114242.1 CDS accA NC_002977.6 1933779 1934744 D identified by similarity to SP:P30867; match to protein family HMM PF03255; match to protein family HMM TIGR00513; acetyl-CoA carboxylase, carboxyl transferase subunit alpha 1933779..1934744 Methylococcus capsulatus str. Bath 3102629 YP_114243.1 CDS tilS NC_002977.6 1934775 1936094 D identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433; tRNA(Ile)-lysidine synthetase 1934775..1936094 Methylococcus capsulatus str. Bath 3104989 YP_114244.1 CDS MCA1806 NC_002977.6 1936099 1938495 R identified by similarity to GP:5257178; fatty acid cis/trans isomerase complement(1936099..1938495) Methylococcus capsulatus str. Bath 3104988 YP_114245.1 CDS MCA1807 NC_002977.6 1939342 1939998 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1939342..1939998 Methylococcus capsulatus str. Bath 3103364 YP_114246.1 CDS MCA1808 NC_002977.6 1940055 1941155 D identified by match to protein family HMM PF02687; ABC transporter permease 1940055..1941155 Methylococcus capsulatus str. Bath 3103363 YP_114247.1 CDS MCA1809 NC_002977.6 1941163 1941870 D identified by similarity to SP:P75831; match to protein family HMM PF00005; ABC transporter ATP-binding protein 1941163..1941870 Methylococcus capsulatus str. Bath 3104327 YP_114248.1 CDS MCA1810 NC_002977.6 1941893 1942873 D identified by similarity to SP:P75830; hypothetical protein 1941893..1942873 Methylococcus capsulatus str. Bath 3104326 YP_114249.1 CDS MCA1811 NC_002977.6 1942936 1944864 D hypothetical protein 1942936..1944864 Methylococcus capsulatus str. Bath 3103876 YP_114250.1 CDS MCA1812 NC_002977.6 1945078 1946508 D identified by similarity to SP:P76403; match to protein family HMM PF01136; U32 family peptidase 1945078..1946508 Methylococcus capsulatus str. Bath 3103875 YP_114251.1 CDS MCA1813 NC_002977.6 1946532 1947017 D regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 1946532..1947017 Methylococcus capsulatus str. Bath 3102897 YP_114252.1 CDS MCA1814 NC_002977.6 1947017 1947601 D identified by similarity to GP:17429685; match to protein family HMM PF01923; match to protein family HMM TIGR00636; ATP:cob(I)alamin adenosyltransferase 1947017..1947601 Methylococcus capsulatus str. Bath 3102896 YP_114253.1 CDS ispH NC_002977.6 1947649 1948590 D identified by similarity to SP:P22565; match to protein family HMM PF02401; match to protein family HMM TIGR00216; hydroxymethylbutenyl pyrophosphate reductase 1947649..1948590 Methylococcus capsulatus str. Bath 3104077 YP_114254.1 CDS MCA1816 NC_002977.6 1948629 1948991 D identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein 1948629..1948991 Methylococcus capsulatus str. Bath 3104076 YP_114255.1 CDS hslR NC_002977.6 1948997 1949422 D identified by similarity to SP:P45802; match to protein family HMM PF01479; heat shock protein 15 1948997..1949422 Methylococcus capsulatus str. Bath 3104618 YP_114256.1 CDS xseA NC_002977.6 1949431 1950834 D identified by similarity to SP:P04994; match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237; exodeoxyribonuclease VII large subunit 1949431..1950834 Methylococcus capsulatus str. Bath 3104617 YP_114257.1 CDS MCA1819 NC_002977.6 1950877 1951416 D identified by match to protein family HMM PF00691; OmpA domain-containing protein 1950877..1951416 Methylococcus capsulatus str. Bath 3102600 YP_114258.1 CDS MCA1820 NC_002977.6 1951550 1951960 D identified by similarity to OMNI:NTL01AT0235; match to protein family HMM TIGR02096; hypothetical protein 1951550..1951960 Methylococcus capsulatus str. Bath 3102599 YP_114259.1 CDS MCA1821 NC_002977.6 1951966 1952577 D identified by similarity to GP:15155134; hypothetical protein 1951966..1952577 Methylococcus capsulatus str. Bath 3104415 YP_114260.1 CDS MCA1822 NC_002977.6 1952691 1953443 D identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 1952691..1953443 Methylococcus capsulatus str. Bath 3104414 YP_114261.1 CDS MCA1823 NC_002977.6 1953400 1953894 R hypothetical protein complement(1953400..1953894) Methylococcus capsulatus str. Bath 3104842 YP_114262.1 CDS MCA1824 NC_002977.6 1953999 1954898 D identified by match to protein family HMM PF00892; hypothetical protein 1953999..1954898 Methylococcus capsulatus str. Bath 3104841 YP_114263.1 CDS MCA1825 NC_002977.6 1954903 1955556 R identified by similarity to GP:17131822; hypothetical protein complement(1954903..1955556) Methylococcus capsulatus str. Bath 3102488 YP_114264.1 CDS MCA1826 NC_002977.6 1955656 1956981 R identified by match to protein family HMM PF01464; hypothetical protein complement(1955656..1956981) Methylococcus capsulatus str. Bath 3102487 YP_114265.1 CDS MCA1827 NC_002977.6 1957140 1957664 R identified by similarity to GP:12698380; hypothetical protein complement(1957140..1957664) Methylococcus capsulatus str. Bath 3103339 YP_114266.1 CDS MCA1828 NC_002977.6 1957742 1958587 R identified by similarity to SP:P14299; dinitrogenase reductase ADP-ribosyltransferase-like protein complement(1957742..1958587) Methylococcus capsulatus str. Bath 3103338 YP_114267.1 CDS clpX NC_002977.6 1958646 1959980 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(1958646..1959980) Methylococcus capsulatus str. Bath 3103428 YP_114268.1 CDS cysE-1 NC_002977.6 1959977 1960726 R identified by similarity to SP:P74089; match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine acetyltransferase complement(1959977..1960726) Methylococcus capsulatus str. Bath 3102518 YP_114269.1 CDS MCA1831 NC_002977.6 1960720 1960887 R hypothetical protein complement(1960720..1960887) Methylococcus capsulatus str. Bath 3104679 YP_114270.1 CDS MCA1833 NC_002977.6 1961125 1962240 D identified by similarity to GP:18891930; hypothetical protein 1961125..1962240 Methylococcus capsulatus str. Bath 3104678 YP_114271.1 CDS MCA1834 NC_002977.6 1962237 1963307 D identified by similarity to SP:P11452; match to protein family HMM PF01188; match to protein family HMM PF02746; chloromuconate cycloisomerase 1962237..1963307 Methylococcus capsulatus str. Bath 3103133 YP_114272.1 CDS MCA1835 NC_002977.6 1963318 1963758 D hypothetical protein 1963318..1963758 Methylococcus capsulatus str. Bath 3103132 YP_114273.2 CDS sfcA NC_002977.6 1963769 1965481 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1963769..1965481 Methylococcus capsulatus str. Bath 3104883 YP_114274.1 CDS ilvK NC_002977.6 1965508 1967169 D catalyzes the formation of 2-acetolactate from pyruvate in stationary phase; acetolactate synthase 1965508..1967169 Methylococcus capsulatus str. Bath 3104882 YP_114275.1 CDS budA NC_002977.6 1967189 1967971 D identified by similarity to SP:P05361; match to protein family HMM PF03306; match to protein family HMM TIGR01252; alpha-acetolactate decarboxylase 1967189..1967971 Methylococcus capsulatus str. Bath 3103061 YP_114276.1 CDS MCA1839 NC_002977.6 1968203 1968784 R identified by similarity to GP:17428896; lipoprotein complement(1968203..1968784) Methylococcus capsulatus str. Bath 3103060 YP_114277.1 CDS MCA1840 NC_002977.6 1968909 1970135 R identified by similarity to OMNI:NTL01PM1826; match to protein family HMM PF02687; hypothetical protein complement(1968909..1970135) Methylococcus capsulatus str. Bath 3102351 YP_114278.1 CDS MCA1841 NC_002977.6 1970128 1970844 R identified by similarity to OMNI:NTL03PA00074; match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1970128..1970844) Methylococcus capsulatus str. Bath 3102350 YP_114279.1 CDS MCA1842 NC_002977.6 1970841 1972802 R identified by similarity to OMNI:NTL01PM1824; hypothetical protein complement(1970841..1972802) Methylococcus capsulatus str. Bath 3102161 YP_114280.1 CDS MCA1843 NC_002977.6 1972799 1974145 R hypothetical protein complement(1972799..1974145) Methylococcus capsulatus str. Bath 3102160 YP_114281.1 CDS MCA1844 NC_002977.6 1974142 1976823 R identified by similarity to GP:15980287; hypothetical protein complement(1974142..1976823) Methylococcus capsulatus str. Bath 3104644 YP_114282.1 CDS MCA1845 NC_002977.6 1976828 1979818 R identified by similarity to GB:AAK03903.1; hypothetical protein complement(1976828..1979818) Methylococcus capsulatus str. Bath 3104643 YP_114283.1 CDS MCA1846 NC_002977.6 1979840 1981414 R identified by similarity to OMNI:NTL01PM1820; hypothetical protein complement(1979840..1981414) Methylococcus capsulatus str. Bath 3104073 YP_114284.1 CDS glmM NC_002977.6 1981615 1982958 R identified by similarity to SP:P31120; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; match to protein family HMM TIGR01455; phosphoglucosamine mutase complement(1981615..1982958) Methylococcus capsulatus str. Bath 3104072 YP_114285.1 CDS ftsH-2 NC_002977.6 1983073 1984989 R identified by similarity to SP:P28691; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; cell division protein FtsH complement(1983073..1984989) Methylococcus capsulatus str. Bath 3104801 YP_114286.1 CDS rrmJ NC_002977.6 1985184 1985816 R identified by similarity to SP:P28692; match to protein family HMM PF01728; ribosomal RNA large subunit methyltransferase J complement(1985184..1985816) Methylococcus capsulatus str. Bath 3104800 YP_114287.1 CDS MCA1850 NC_002977.6 1985866 1986156 D identified by similarity to OMNI:VC0635; match to protein family HMM PF01985; match to protein family HMM TIGR00253; hypothetical protein 1985866..1986156 Methylococcus capsulatus str. Bath 3103678 YP_114288.1 CDS greA NC_002977.6 1986153 1986629 R identified by similarity to SP:P21346; match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462; transcription elongation factor GreA complement(1986153..1986629) Methylococcus capsulatus str. Bath 3102824 YP_114289.1 CDS carB NC_002977.6 1986654 1989872 R identified by match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369; carbamoyl-phosphate synthase large subunit complement(1986654..1989872) Methylococcus capsulatus str. Bath 3102823 YP_114290.1 CDS carA NC_002977.6 1989888 1991024 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(1989888..1991024) Methylococcus capsulatus str. Bath 3105027 YP_114291.1 CDS dapB NC_002977.6 1991159 1991968 R identified by similarity to SP:P04036; match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036; dihydrodipicolinate reductase complement(1991159..1991968) Methylococcus capsulatus str. Bath 3105026 YP_114292.1 CDS dnaJ NC_002977.6 1991986 1993119 R identified by similarity to SP:P08622; match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; dnaJ protein complement(1991986..1993119) Methylococcus capsulatus str. Bath 3102597 YP_114293.1 CDS dnaK NC_002977.6 1993215 1995140 R identified by similarity to SP:P04475; match to protein family HMM PF00012; molecular chaperone DnaK complement(1993215..1995140) Methylococcus capsulatus str. Bath 3102596 YP_114294.1 CDS grpE NC_002977.6 1995209 1995766 R identified by similarity to SP:P09372; match to protein family HMM PF01025; heat shock protein GrpE complement(1995209..1995766) Methylococcus capsulatus str. Bath 3102422 YP_114295.1 CDS hrcA NC_002977.6 1995875 1996927 R identified by match to protein family HMM PF01628; match to protein family HMM TIGR00331; heat-inducible transcription repressor HrcA complement(1995875..1996927) Methylococcus capsulatus str. Bath 3102421 YP_114296.1 CDS MCA1859 NC_002977.6 1997141 1998013 D identified by similarity to SP:Q9HZC0; match to protein family HMM PF01513; hypothetical protein 1997141..1998013 Methylococcus capsulatus str. Bath 3103756 YP_114297.1 CDS recN NC_002977.6 1998017 1999693 D identified by similarity to SP:P05824; match to protein family HMM TIGR00634; DNA repair protein RecN 1998017..1999693 Methylococcus capsulatus str. Bath 3103755 YP_114298.1 CDS MCA1861 NC_002977.6 1999906 2001009 D identified by similarity to OMNI:NTL01XF02443; match to protein family HMM PF04371; hypothetical protein 1999906..2001009 Methylococcus capsulatus str. Bath 3103173 YP_114299.1 CDS MCA1862 NC_002977.6 2001006 2001893 D identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 2001006..2001893 Methylococcus capsulatus str. Bath 3103172 YP_114300.1 CDS MCA1863 NC_002977.6 2001965 2002303 R identified by similarity to SP:P42505; match to protein family HMM PF00816; regulatory protein complement(2001965..2002303) Methylococcus capsulatus str. Bath 3102206 YP_114301.1 CDS mfd NC_002977.6 2002683 2006126 D identified by similarity to SP:P30958; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor 2002683..2006126 Methylococcus capsulatus str. Bath 3102205 YP_114302.1 CDS ribE-2 NC_002977.6 2006185 2006841 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2006185..2006841 Methylococcus capsulatus str. Bath 3103238 YP_114303.1 CDS MCA1866 NC_002977.6 2006969 2007196 D hypothetical protein 2006969..2007196 Methylococcus capsulatus str. Bath 3103237 YP_114304.1 CDS MCA1867 NC_002977.6 2007197 2007559 R identified by similarity to PIR:JC7085; (2Fe-2S) ferredoxin complement(2007197..2007559) Methylococcus capsulatus str. Bath 3102798 YP_114305.1 CDS recQ NC_002977.6 2007600 2009759 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389; ATP-dependent DNA helicase RecQ complement(2007600..2009759) Methylococcus capsulatus str. Bath 3102797 YP_114306.1 CDS MCA1869 NC_002977.6 2009846 2010205 D identified by similarity to OMNI:NTL01SS00582; hypothetical protein 2009846..2010205 Methylococcus capsulatus str. Bath 3103169 YP_114307.1 CDS MCA1870 NC_002977.6 2010202 2011047 D riboflavin biosynthesis protein RibD domain-containing protein 2010202..2011047 Methylococcus capsulatus str. Bath 3103168 YP_114308.1 CDS MCA1871 NC_002977.6 2011064 2012770 D identified by similarity to SP:P27854; match to protein family HMM PF03109; ubiquinone biosynthesis protein AarF 2011064..2012770 Methylococcus capsulatus str. Bath 3102191 YP_114309.1 CDS MCA1872 NC_002977.6 2012729 2014021 R identified by similarity to SP:P37312; match to protein family HMM PF00375; C4-dicarboxylate transporter complement(2012729..2014021) Methylococcus capsulatus str. Bath 3102190 YP_114310.1 CDS MCA1873 NC_002977.6 2014295 2015962 D identified by similarity to GP:3549693; hypothetical protein 2014295..2015962 Methylococcus capsulatus str. Bath 3102126 YP_114311.1 CDS MCA1874 NC_002977.6 2015999 2016724 R identified by match to protein family HMM PF03734; hypothetical protein complement(2015999..2016724) Methylococcus capsulatus str. Bath 3102125 YP_114312.1 CDS MCA1875 NC_002977.6 2016800 2017804 D identified by match to protein family HMM PF01758; bile acid transporter family protein 2016800..2017804 Methylococcus capsulatus str. Bath 3104611 YP_114313.1 CDS MCA1876 NC_002977.6 2017761 2018828 R catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase complement(2017761..2018828) Methylococcus capsulatus str. Bath 3104610 YP_114314.1 CDS MCA1877 NC_002977.6 2018809 2019690 D hypothetical protein 2018809..2019690 Methylococcus capsulatus str. Bath 3102762 YP_114315.1 CDS MCA1878 NC_002977.6 2019692 2020087 R identified by similarity to OMNI:NTL01SM02419; match to protein family HMM PF01152; hypothetical protein complement(2019692..2020087) Methylococcus capsulatus str. Bath 3102761 YP_114316.1 CDS nadD NC_002977.6 2020101 2020733 R transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase complement(2020101..2020733) Methylococcus capsulatus str. Bath 3102153 YP_114317.1 CDS proA NC_002977.6 2020747 2022039 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(2020747..2022039) Methylococcus capsulatus str. Bath 3102152 YP_114318.1 CDS MCA1881 NC_002977.6 2022036 2022437 R hypothetical protein complement(2022036..2022437) Methylococcus capsulatus str. Bath 3102517 YP_114319.1 CDS MCA1883 NC_002977.6 2022692 2026636 D identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733; non-ribosomal peptide synthetase 2022692..2026636 Methylococcus capsulatus str. Bath 3102516 YP_114320.1 CDS MCA1884 NC_002977.6 2026818 2027711 D hypothetical protein 2026818..2027711 Methylococcus capsulatus str. Bath 3103001 YP_114321.1 CDS MCA1886 NC_002977.6 2028465 2029043 D identified by similarity to OMNI:NTL01SPL0989; hypothetical protein 2028465..2029043 Methylococcus capsulatus str. Bath 3103000 YP_114322.1 CDS MCA1887 NC_002977.6 2029128 2029370 D identified by similarity to GP:6899520; hypothetical protein 2029128..2029370 Methylococcus capsulatus str. Bath 3103262 YP_114323.1 CDS hsdM NC_002977.6 2029427 2031007 D identified by similarity to GP:17984614; match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM TIGR00497; type I restriction-modification system, M subunit 2029427..2031007 Methylococcus capsulatus str. Bath 3103261 YP_114324.1 CDS MCA1889 NC_002977.6 2031004 2032113 D identified by similarity to GP:6723238; hypothetical protein 2031004..2032113 Methylococcus capsulatus str. Bath 3104013 YP_114325.1 CDS MCA1890 NC_002977.6 2032106 2033356 D identified by match to protein family HMM PF01420; type I restriction-modification system subunit S 2032106..2033356 Methylococcus capsulatus str. Bath 3104012 YP_114326.1 CDS MCA1891 NC_002977.6 2033353 2035986 D identified by similarity to GP:6009450; match to protein family HMM PF02231; hypothetical protein 2033353..2035986 Methylococcus capsulatus str. Bath 3103201 YP_114327.1 CDS MCA1892 NC_002977.6 2035968 2037116 D identified by similarity to GP:19916049; match to protein family HMM PF04326; hypothetical protein 2035968..2037116 Methylococcus capsulatus str. Bath 3103200 YP_114328.1 CDS MCA1893 NC_002977.6 2037119 2040328 D identified by similarity to GP:19919302; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; type I restriction-modification system, R subunit 2037119..2040328 Methylococcus capsulatus str. Bath 3104219 YP_114329.1 CDS MCA1894 NC_002977.6 2040325 2041053 D identified by similarity to GP:19919303; match to protein family HMM PF01863; hypothetical protein 2040325..2041053 Methylococcus capsulatus str. Bath 3104218 YP_114330.1 CDS MCA1895 NC_002977.6 2041257 2041580 D identified by match to protein family HMM PF01527; ISMca3, transposase, OrfA 2041257..2041580 Methylococcus capsulatus str. Bath 3104257 YP_114331.1 CDS MCA1896 NC_002977.6 2041637 2042485 D identified by match to protein family HMM PF00665; ISMca3, transposase, OrfB 2041637..2042485 Methylococcus capsulatus str. Bath 3104256 YP_114332.1 CDS MCA1897 NC_002977.6 2042856 2044361 R hypothetical protein complement(2042856..2044361) Methylococcus capsulatus str. Bath 3104940 YP_114333.1 CDS rumA NC_002977.6 2044378 2045709 R identified by similarity to SP:P55135; match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA complement(2044378..2045709) Methylococcus capsulatus str. Bath 3104939 YP_114334.1 CDS cysM NC_002977.6 2045711 2046598 R catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B complement(2045711..2046598) Methylococcus capsulatus str. Bath 3103585 YP_114335.1 CDS MCA1900 NC_002977.6 2046713 2047657 R identified by similarity to GP:15025562; match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein complement(2046713..2047657) Methylococcus capsulatus str. Bath 3103584 YP_114336.1 CDS MCA1901 NC_002977.6 2047767 2048588 D hypothetical protein 2047767..2048588 Methylococcus capsulatus str. Bath 3105050 YP_114337.1 CDS MCA1902 NC_002977.6 2048593 2049129 R identified by similarity to SP:O67303; hypothetical protein complement(2048593..2049129) Methylococcus capsulatus str. Bath 3105049 YP_114338.1 CDS MCA1903 NC_002977.6 2049126 2049620 R identified by similarity to OMNI:NTL01AA00874; hypothetical protein complement(2049126..2049620) Methylococcus capsulatus str. Bath 3104364 YP_114339.1 CDS MCA1904 NC_002977.6 2049800 2050498 R lipoprotein complement(2049800..2050498) Methylococcus capsulatus str. Bath 3104363 YP_114340.1 CDS MCA1905 NC_002977.6 2050524 2052041 R identified by similarity to SP:O67300; hypothetical protein complement(2050524..2052041) Methylococcus capsulatus str. Bath 3103266 YP_114341.1 CDS MCA1906 NC_002977.6 2052282 2053454 D identified by similarity to SP:Q51658; match to protein family HMM PF03150; cytochrome c peroxidase 2052282..2053454 Methylococcus capsulatus str. Bath 3103265 YP_114342.1 CDS cax-2 NC_002977.6 2053460 2054545 R identified by match to protein family HMM PF01699; match to protein family HMM TIGR00378; calcium/proton exchanger complement(2053460..2054545) Methylococcus capsulatus str. Bath 3103427 YP_114343.1 CDS MCA1908 NC_002977.6 2054681 2054857 R hypothetical protein complement(2054681..2054857) Methylococcus capsulatus str. Bath 3104183 YP_114344.1 CDS MCA1910 NC_002977.6 2055204 2055470 D hypothetical protein 2055204..2055470 Methylococcus capsulatus str. Bath 3104182 YP_114345.1 CDS MCA1911 NC_002977.6 2055660 2058179 D identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525; heavy metal translocating P-type ATPase 2055660..2058179 Methylococcus capsulatus str. Bath 3104044 YP_114346.1 CDS MCA1912 NC_002977.6 2058151 2058426 D hypothetical protein 2058151..2058426 Methylococcus capsulatus str. Bath 3104043 YP_114347.1 CDS MCA1913 NC_002977.6 2058401 2058757 D hypothetical protein 2058401..2058757 Methylococcus capsulatus str. Bath 3104956 YP_114348.1 CDS MCA1914 NC_002977.6 2058741 2059004 D hypothetical protein 2058741..2059004 Methylococcus capsulatus str. Bath 3104955 YP_114349.1 CDS MCA1915 NC_002977.6 2059046 2062252 D identified by match to protein family HMM PF00122; cation transporter E1-E2 family ATPase 2059046..2062252 Methylococcus capsulatus str. Bath 3102305 YP_114350.1 CDS MCA1916 NC_002977.6 2062292 2062732 D hypothetical protein 2062292..2062732 Methylococcus capsulatus str. Bath 3103470 YP_114351.1 CDS MCA1917 NC_002977.6 2062778 2063626 D identified by similarity to OMNI:NTL02EC4339; match to protein family HMM PF04378; hypothetical protein 2062778..2063626 Methylococcus capsulatus str. Bath 3103469 YP_114352.1 CDS ndh NC_002977.6 2063664 2064986 R identified by similarity to SP:P00393; match to protein family HMM PF00070; NADH dehydrogenase complement(2063664..2064986) Methylococcus capsulatus str. Bath 3105044 YP_114353.1 CDS MCA1919 NC_002977.6 2065027 2066016 R hypothetical protein complement(2065027..2066016) Methylococcus capsulatus str. Bath 3105043 YP_114354.1 CDS relA NC_002977.6 2066195 2068351 D identified by similarity to SP:P11585; match to protein family HMM PF01842; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; GTP pyrophosphokinase 2066195..2068351 Methylococcus capsulatus str. Bath 3102228 YP_114355.1 CDS MCA1921 NC_002977.6 2068527 2068901 R hypothetical protein complement(2068527..2068901) Methylococcus capsulatus str. Bath 3102227 YP_114356.1 CDS MCA1922 NC_002977.6 2069018 2070265 R identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase complement(2069018..2070265) Methylococcus capsulatus str. Bath 3103320 YP_114357.1 CDS MCA1924 NC_002977.6 2070513 2071328 R identified by similarity to OMNI:TM0812; match to protein family HMM PF00528; sugar ABC transporter permease complement(2070513..2071328) Methylococcus capsulatus str. Bath 3103319 YP_114358.1 CDS MCA1925 NC_002977.6 2071339 2071815 R identified by similarity to OMNI:NTL01SMB01298; match to protein family HMM PF07300; hypothetical protein complement(2071339..2071815) Methylococcus capsulatus str. Bath 3104719 YP_114359.1 CDS MCA1926 NC_002977.6 2072014 2072604 D identified by similarity to SP:P17552; ChrB domain-containing protein 2072014..2072604 Methylococcus capsulatus str. Bath 3104718 YP_114360.1 CDS MCA1927 NC_002977.6 2072601 2073239 D identified by similarity to OMNI:NTL02ML3828; hypothetical protein 2072601..2073239 Methylococcus capsulatus str. Bath 3103103 YP_114361.1 CDS MCA1928 NC_002977.6 2073441 2073929 D identified by similarity to GP:17134329; match to protein family HMM PF03413; hypothetical protein 2073441..2073929 Methylococcus capsulatus str. Bath 3103102 YP_114362.1 CDS MCA1929 NC_002977.6 2074106 2076961 D identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524; magnesium-translocating P-type ATPase 2074106..2076961 Methylococcus capsulatus str. Bath 3103005 YP_114363.1 CDS MCA1930 NC_002977.6 2076980 2077291 D identified by similarity to GP:19913962; match to protein family HMM PF02641; hypothetical protein 2076980..2077291 Methylococcus capsulatus str. Bath 3103004 YP_114364.1 CDS MCA1931 NC_002977.6 2077499 2078227 D hypothetical protein 2077499..2078227 Methylococcus capsulatus str. Bath 3102577 YP_114365.1 CDS MCA1932 NC_002977.6 2078371 2079531 R identified by match to protein family HMM PF07690; hypothetical protein complement(2078371..2079531) Methylococcus capsulatus str. Bath 3102576 YP_114366.1 CDS eno NC_002977.6 2080068 2081333 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(2080068..2081333) Methylococcus capsulatus str. Bath 3103596 YP_114367.1 CDS MCA1934 NC_002977.6 2081344 2081442 R hypothetical protein complement(2081344..2081442) Methylococcus capsulatus str. Bath 3102197 YP_114368.1 CDS MCA1935 NC_002977.6 2081439 2084480 R AcrB/AcrD/AcrF family protein complement(2081439..2084480) Methylococcus capsulatus str. Bath 3102754 YP_114369.1 CDS MCA1936 NC_002977.6 2084480 2085529 R identified by similarity to SP:P94176; match to protein family HMM TIGR01730; transporter complement(2084480..2085529) Methylococcus capsulatus str. Bath 3102753 YP_114370.1 CDS MCA1937 NC_002977.6 2085540 2086925 R identified by match to protein family HMM PF02321; outer membrane efflux protein complement(2085540..2086925) Methylococcus capsulatus str. Bath 3102646 YP_114371.1 CDS MCA1938 NC_002977.6 2086922 2088247 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(2086922..2088247) Methylococcus capsulatus str. Bath 3102645 YP_114372.1 CDS MCA1939 NC_002977.6 2088244 2088909 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(2088244..2088909) Methylococcus capsulatus str. Bath 3103206 YP_114373.1 CDS MCA1940 NC_002977.6 2089006 2089152 D hypothetical protein 2089006..2089152 Methylococcus capsulatus str. Bath 3103205 YP_114374.1 CDS MCA1941 NC_002977.6 2089178 2090482 D identified by similarity to OMNI:NTL01LM1722; match to protein family HMM PF01547; sugar ABC transporter sugar-binding protein 2089178..2090482 Methylococcus capsulatus str. Bath 3102722 YP_114375.1 CDS MCA1942 NC_002977.6 2090479 2091342 D identified by similarity to SP:P29823; match to protein family HMM PF00528; sugar ABC transporter permease 2090479..2091342 Methylococcus capsulatus str. Bath 3103589 YP_114376.1 CDS MCA1943 NC_002977.6 2091533 2091859 R hypothetical protein complement(2091533..2091859) Methylococcus capsulatus str. Bath 3103588 YP_114377.1 CDS MCA1944 NC_002977.6 2091907 2092977 D identified by similarity to SP:P19566; match to protein family HMM PF00005; sugar ABC transporter, ATP-binding protein 2091907..2092977 Methylococcus capsulatus str. Bath 3102159 YP_114378.1 CDS mobA NC_002977.6 2092962 2093570 R identified by similarity to SP:P32173; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(2092962..2093570) Methylococcus capsulatus str. Bath 3102158 YP_114379.1 CDS MCA1946 NC_002977.6 2093591 2094055 D lipoprotein 2093591..2094055 Methylococcus capsulatus str. Bath 3104935 YP_114380.1 CDS MCA1947 NC_002977.6 2094082 2094546 D identified by similarity to OMNI:NTL01SMB00166; hypothetical protein 2094082..2094546 Methylococcus capsulatus str. Bath 3104934 YP_114381.1 CDS MCA1948 NC_002977.6 2095156 2095698 R hypothetical protein complement(2095156..2095698) Methylococcus capsulatus str. Bath 3104859 YP_114382.1 CDS moaA NC_002977.6 2095708 2096739 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(2095708..2096739) Methylococcus capsulatus str. Bath 3104858 YP_114383.1 CDS gnd NC_002977.6 2096844 2098361 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(2096844..2098361) Methylococcus capsulatus str. Bath 3102558 YP_114384.1 CDS MCA1951 NC_002977.6 2098473 2100476 D identified by similarity to GP:3493145; hypothetical protein 2098473..2100476 Methylococcus capsulatus str. Bath 3102557 YP_114385.1 CDS sucA NC_002977.6 2100596 2103409 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 2100596..2103409 Methylococcus capsulatus str. Bath 3102417 YP_114386.1 CDS sucB NC_002977.6 2103375 2104520 D identified by similarity to SP:P07016; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01347; 2-oxoglutarate dehydrogenase E2 2103375..2104520 Methylococcus capsulatus str. Bath 3102416 YP_114387.2 CDS ppk NC_002977.6 2104553 2106697 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(2104553..2106697) Methylococcus capsulatus str. Bath 3102540 YP_114388.1 CDS MCA1955 NC_002977.6 2106910 2107518 R identified by similarity to SP:P35593; match to protein family HMM PF01641; match to protein family HMM TIGR00357; peptide methionine sulfoxide reductase complement(2106910..2107518) Methylococcus capsulatus str. Bath 3102539 YP_114389.1 CDS MCA1956 NC_002977.6 2107542 2108642 R identified by match to protein family HMM PF01609; ISMca1, transposase complement(2107542..2108642) Methylococcus capsulatus str. Bath 3102398 YP_114390.1 CDS MCA1957 NC_002977.6 2109113 2111029 D identified by similarity to OMNI:CC1750; match to protein family HMM PF00593; TonB-dependent receptor 2109113..2111029 Methylococcus capsulatus str. Bath 3102397 YP_114391.1 CDS sspB NC_002977.6 2111039 2111431 R identified by similarity to SP:P25663; match to protein family HMM PF04386; ClpXP protease specificity-enhancing factor complement(2111039..2111431) Methylococcus capsulatus str. Bath 3102263 YP_114392.1 CDS sspA NC_002977.6 2111428 2112081 R identified by match to protein family HMM PF00043; match to protein family HMM PF02798; stringent starvation protein A complement(2111428..2112081) Methylococcus capsulatus str. Bath 3102262 YP_114393.1 CDS petC NC_002977.6 2112317 2113039 R identified by similarity to SP:P08501; match to protein family HMM PF02167; ubiquinol--cytochrome c reductase, cytochrome c1 complement(2112317..2113039) Methylococcus capsulatus str. Bath 3104209 YP_114394.1 CDS petB NC_002977.6 2113036 2114415 R identified by similarity to SP:P23134; match to protein family HMM PF00032; match to protein family HMM PF00033; ubiquinol--cytochrome c reductase, cytochrome B complement(2113036..2114415) Methylococcus capsulatus str. Bath 3104208 YP_114395.1 CDS petA NC_002977.6 2114415 2115011 R identified by similarity to SP:P81380; match to protein family HMM PF00355; match to protein family HMM TIGR01416; ubiquinol-cytochrome c reductase, iron-sulfur subunit complement(2114415..2115011) Methylococcus capsulatus str. Bath 3102077 YP_114396.1 CDS hisD NC_002977.6 2115248 2116558 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(2115248..2116558) Methylococcus capsulatus str. Bath 3102435 YP_114397.1 CDS hisG NC_002977.6 2116563 2117204 R short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase complement(2116563..2117204) Methylococcus capsulatus str. Bath 3103911 YP_114398.1 CDS murA NC_002977.6 2117209 2118474 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(2117209..2118474) Methylococcus capsulatus str. Bath 3103910 YP_114399.1 CDS MCA1966 NC_002977.6 2118467 2118829 R identified by match to protein family HMM PF01740; STAS domain-containing protein complement(2118467..2118829) Methylococcus capsulatus str. Bath 3103177 YP_114400.1 CDS MCA1967 NC_002977.6 2118832 2119332 R identified by similarity to GP:4336800; match to protein family HMM PF02470; hypothetical protein complement(2118832..2119332) Methylococcus capsulatus str. Bath 3103176 YP_114401.1 CDS MCA1968 NC_002977.6 2119336 2120127 R identified by similarity to OMNI:VC2519; match to protein family HMM PF02405; match to protein family HMM TIGR00056; hypothetical protein complement(2119336..2120127) Methylococcus capsulatus str. Bath 3102216 YP_114402.1 CDS MCA1969 NC_002977.6 2120124 2120951 R identified by similarity to SP:P45393; match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2120124..2120951) Methylococcus capsulatus str. Bath 3102215 YP_114403.1 CDS serS NC_002977.6 2121755 2123038 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(2121755..2123038) Methylococcus capsulatus str. Bath 3104615 YP_114404.1 CDS MCA1972 NC_002977.6 2123046 2123198 R hypothetical protein complement(2123046..2123198) Methylococcus capsulatus str. Bath 3104294 YP_114405.1 CDS MCA1973 NC_002977.6 2123269 2123955 R identified by similarity to SP:Q9KVS9; match to protein family HMM PF02537; match to protein family HMM TIGR00494; crcB protein domain-containing protein complement(2123269..2123955) Methylococcus capsulatus str. Bath 3104293 YP_114406.1 CDS MCA1974 NC_002977.6 2123952 2125010 R identified by similarity to SP:Q9PAG5; match to protein family HMM PF01008; match to protein family HMM TIGR00524; initiation factor 2 subunit family protein complement(2123952..2125010) Methylococcus capsulatus str. Bath 3104215 YP_114407.1 CDS MCA1975 NC_002977.6 2125114 2125866 R identified by similarity to OMNI:VC2598; match to protein family HMM PF00588; match to protein family HMM TIGR00186; RNA methyltransferase complement(2125114..2125866) Methylococcus capsulatus str. Bath 3104214 YP_114408.1 CDS vacB NC_002977.6 2125863 2128130 R identified by similarity to SP:P21499; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R complement(2125863..2128130) Methylococcus capsulatus str. Bath 3102196 YP_114409.1 CDS MCA1977 NC_002977.6 2128535 2128687 D phage integrase site specific recombinase 2128535..2128687 Methylococcus capsulatus str. Bath 3102195 YP_114410.1 CDS purA NC_002977.6 2128929 2130227 R identified by match to protein family HMM PF00709; match to protein family HMM TIGR00184; adenylosuccinate synthetase complement(2128929..2130227) Methylococcus capsulatus str. Bath 3105053 YP_114411.1 CDS MCA1979 NC_002977.6 2130298 2131518 R Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase complement(2130298..2131518) Methylococcus capsulatus str. Bath 3102894 YP_114412.1 CDS hflC NC_002977.6 2131647 2132510 R identified by similarity to SP:P25661; match to protein family HMM PF01145; match to protein family HMM TIGR01932; hflC protein complement(2131647..2132510) Methylococcus capsulatus str. Bath 3103302 YP_114413.1 CDS hflK NC_002977.6 2132510 2133721 R identified by similarity to SP:P25662; match to protein family HMM PF01145; match to protein family HMM TIGR01933; hflK protein complement(2132510..2133721) Methylococcus capsulatus str. Bath 3103301 YP_114414.1 CDS MCA1982 NC_002977.6 2133823 2135124 R identified by similarity to SP:P25519; match to protein family HMM TIGR00231; GTP-binding protein complement(2133823..2135124) Methylococcus capsulatus str. Bath 3103254 YP_114415.1 CDS hfq NC_002977.6 2135172 2135420 R identified by similarity to SP:P25521; match to protein family HMM PF01423; hfq protein complement(2135172..2135420) Methylococcus capsulatus str. Bath 3102156 YP_114416.1 CDS MCA1984 NC_002977.6 2135733 2136737 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 2135733..2136737 Methylococcus capsulatus str. Bath 3103253 YP_114417.1 CDS MCA1985 NC_002977.6 2136734 2137297 D Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase 2136734..2137297 Methylococcus capsulatus str. Bath 3102155 YP_114418.1 CDS MCA1986 NC_002977.6 2137299 2138039 D Catalyzes the phosphorolytic cleavage of 6-oxopurine nucleosides; 5'-methylthioadenosine phosphorylase 2137299..2138039 Methylococcus capsulatus str. Bath 3103788 YP_114419.1 CDS soxY NC_002977.6 2138046 2138492 R identified by similarity to GP:19879576; sulfur compound-chelating protein SoxY complement(2138046..2138492) Methylococcus capsulatus str. Bath 3103787 YP_114420.1 CDS MCA1988 NC_002977.6 2138578 2138919 D hypothetical protein 2138578..2138919 Methylococcus capsulatus str. Bath 3102048 YP_114421.1 CDS soxZ NC_002977.6 2138921 2139223 D identified by similarity to GP:19879577; sulfur compound-chelating protein SoxZ 2138921..2139223 Methylococcus capsulatus str. Bath 3102047 YP_114422.1 CDS prfC NC_002977.6 2139224 2140804 R stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 complement(2139224..2140804) Methylococcus capsulatus str. Bath 3104261 YP_114423.1 CDS MCA1991 NC_002977.6 2140889 2142826 R identified by similarity to SP:P54394; ATP-dependent helicase complement(2140889..2142826) Methylococcus capsulatus str. Bath 3104260 YP_114424.1 CDS MCA1992 NC_002977.6 2142828 2143358 R hypothetical protein complement(2142828..2143358) Methylococcus capsulatus str. Bath 3104544 YP_114425.1 CDS MCA1993 NC_002977.6 2143413 2144261 R identified by similarity to SP:P37346; match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family deoxyribonuclease complement(2143413..2144261) Methylococcus capsulatus str. Bath 3104543 YP_114426.1 CDS pilZ NC_002977.6 2144230 2144586 R identified by similarity to OMNI:NTL03PA02960; match to protein family HMM PF07238; type 4 fimbrial biogenesis protein PilZ complement(2144230..2144586) Methylococcus capsulatus str. Bath 3104224 YP_114427.1 CDS holB NC_002977.6 2144583 2145590 R identified by similarity to SP:P28631; DNA polymerase III subunit delta' complement(2144583..2145590) Methylococcus capsulatus str. Bath 3104387 YP_114428.1 CDS tmk NC_002977.6 2145583 2146209 R identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041; thymidylate kinase complement(2145583..2146209) Methylococcus capsulatus str. Bath 3104386 YP_114429.1 CDS MCA1997 NC_002977.6 2146206 2147201 R identified by similarity to OMNI:NTL03PA02963; match to protein family HMM PF02618; match to protein family HMM TIGR00247; hypothetical protein complement(2146206..2147201) Methylococcus capsulatus str. Bath 3104738 YP_114430.1 CDS pabC NC_002977.6 2147198 2148028 R catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase complement(2147198..2148028) Methylococcus capsulatus str. Bath 3104737 YP_114431.1 CDS fabF NC_002977.6 2148086 2149291 R identified by similarity to SP:P39435; match to protein family HMM PF00109; match to protein family HMM PF02801; 3-oxoacyl-ACP synthase complement(2148086..2149291) Methylococcus capsulatus str. Bath 3103219 YP_114432.1 CDS acpP NC_002977.6 2149406 2149636 R identified by similarity to SP:P02901; match to protein family HMM PF00550; match to protein family HMM TIGR00517; acyl carrier protein complement(2149406..2149636) Methylococcus capsulatus str. Bath 3103218 YP_114433.1 CDS fabG NC_002977.6 2149729 2150466 R identified by similarity to SP:P25716; match to protein family HMM PF00106; match to protein family HMM TIGR01830; 3-oxoacyl-ACP reductase complement(2149729..2150466) Methylococcus capsulatus str. Bath 3102381 YP_114434.1 CDS fabD NC_002977.6 2150463 2151419 R identified by similarity to SP:P25715; match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase complement(2150463..2151419) Methylococcus capsulatus str. Bath 3102380 YP_114435.1 CDS fabH-1 NC_002977.6 2151432 2152397 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(2151432..2152397) Methylococcus capsulatus str. Bath 3103003 YP_114436.1 CDS plsX NC_002977.6 2152394 2153413 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(2152394..2153413) Methylococcus capsulatus str. Bath 3103002 YP_114437.1 CDS rpmF NC_002977.6 2153492 2153686 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(2153492..2153686) Methylococcus capsulatus str. Bath 3103107 YP_114438.1 CDS MCA2006 NC_002977.6 2153696 2154211 R identified by match to protein family HMM PF02620; hypothetical protein complement(2153696..2154211) Methylococcus capsulatus str. Bath 3103106 YP_114439.1 CDS maf-2 NC_002977.6 2154268 2154867 D identified by similarity to SP:Q02169; match to protein family HMM PF02545; match to protein family HMM TIGR00172; maf protein 2154268..2154867 Methylococcus capsulatus str. Bath 3103086 YP_114440.1 CDS MCA2008 NC_002977.6 2154890 2155534 R identified by similarity to GP:17427990; match to protein family HMM PF01464; transglycosylase complement(2154890..2155534) Methylococcus capsulatus str. Bath 3103646 YP_114441.1 CDS purT NC_002977.6 2155604 2156806 R non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 complement(2155604..2156806) Methylococcus capsulatus str. Bath 3103645 YP_114442.1 CDS MCA2010 NC_002977.6 2156922 2158727 R identified by match to protein family HMM PF03160; calx-beta domain-containg protein complement(2156922..2158727) Methylococcus capsulatus str. Bath 3103147 YP_114443.1 CDS MCA2011 NC_002977.6 2158983 2160695 R identified by similarity to SP:Q8Z9E1; match to protein family HMM TIGR01409; multicopper oxidase complement(2158983..2160695) Methylococcus capsulatus str. Bath 3103146 YP_114444.1 CDS MCA2012 NC_002977.6 2160842 2161606 D hypothetical protein 2160842..2161606 Methylococcus capsulatus str. Bath 3102967 YP_114445.1 CDS proS NC_002977.6 2161701 2163452 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 2161701..2163452 Methylococcus capsulatus str. Bath 3102966 YP_114446.1 CDS hslV NC_002977.6 2163509 2164072 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 2163509..2164072 Methylococcus capsulatus str. Bath 3103860 YP_114447.1 CDS hslU NC_002977.6 2164069 2165391 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 2164069..2165391 Methylococcus capsulatus str. Bath 3103859 YP_114448.1 CDS MCA2016 NC_002977.6 2165388 2165753 D identified by similarity to GP:17427467; match to protein family HMM PF06155; hypothetical protein 2165388..2165753 Methylococcus capsulatus str. Bath 3103628 YP_114449.1 CDS ubiE NC_002977.6 2165781 2166527 D identified by similarity to SP:P27851; match to protein family HMM PF01209; match to protein family HMM TIGR01934; ubiquinone/menaquinone biosynthesis methlytransferase UbiE 2165781..2166527 Methylococcus capsulatus str. Bath 3103627 YP_114450.1 CDS MCA2018 NC_002977.6 2166530 2167192 D identified by similarity to OMNI:NTL03PA05065; match to protein family HMM PF06843; hypothetical protein 2166530..2167192 Methylococcus capsulatus str. Bath 3103998 YP_114451.1 CDS MCA2019 NC_002977.6 2167189 2168817 D identified by similarity to SP:P27854; match to protein family HMM PF03109; match to protein family HMM TIGR01982; ubiquinone biosynthesis protein AarF 2167189..2168817 Methylococcus capsulatus str. Bath 3103997 YP_114452.1 CDS MCA2020 NC_002977.6 2168884 2169441 D identified by similarity to GP:2564974; hypothetical protein 2168884..2169441 Methylococcus capsulatus str. Bath 3104830 YP_114453.1 CDS pgk NC_002977.6 2169482 2170657 D identified by similarity to SP:P11665; match to protein family HMM PF00162; phosphoglycerate kinase 2169482..2170657 Methylococcus capsulatus str. Bath 3104829 YP_114454.1 CDS rpoZ NC_002977.6 2170789 2171070 D identified by similarity to SP:P08374; match to protein family HMM PF01192; match to protein family HMM TIGR00690; DNA-directed RNA polymerase subunit omega 2170789..2171070 Methylococcus capsulatus str. Bath 3103093 YP_114455.1 CDS spoT NC_002977.6 2171099 2173306 D identified by similarity to SP:P17580; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase 2171099..2173306 Methylococcus capsulatus str. Bath 3105018 YP_114456.1 CDS MCA2024 NC_002977.6 2173313 2173699 D identified by similarity to SP:P40431; match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP 2173313..2173699 Methylococcus capsulatus str. Bath 3105017 YP_114457.1 CDS recG NC_002977.6 2173712 2175787 D identified by similarity to SP:P24230; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00643; ATP-dependent DNA helicase RecG 2173712..2175787 Methylococcus capsulatus str. Bath 3104152 YP_114458.1 CDS MCA2026 NC_002977.6 2175864 2176211 D hypothetical protein 2175864..2176211 Methylococcus capsulatus str. Bath 3104151 YP_114459.1 CDS MCA2027 NC_002977.6 2176241 2176585 R identified by similarity to GP:16501893; match to protein family HMM PF02410; match to protein family HMM TIGR00090; iojap family protein complement(2176241..2176585) Methylococcus capsulatus str. Bath 3103986 YP_114460.1 CDS MCA2028 NC_002977.6 2176844 2178532 R identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476; membrane-bound lytic murein transglycosylase complement(2176844..2178532) Methylococcus capsulatus str. Bath 3103985 YP_114461.1 CDS MCA2029 NC_002977.6 2178592 2179332 D hypothetical protein 2178592..2179332 Methylococcus capsulatus str. Bath 3103038 YP_114462.1 CDS MCA2030 NC_002977.6 2179629 2179808 R hypothetical protein complement(2179629..2179808) Methylococcus capsulatus str. Bath 3103037 YP_114463.1 CDS MCA2031 NC_002977.6 2179950 2180099 R hypothetical protein complement(2179950..2180099) Methylococcus capsulatus str. Bath 3104527 YP_114464.1 CDS MCA2032 NC_002977.6 2180108 2181199 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(2180108..2181199) Methylococcus capsulatus str. Bath 3102696 YP_114465.1 CDS MCA2033 NC_002977.6 2181212 2182669 R identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479; mannose-1-phosphate guanylyltransferase complement(2181212..2182669) Methylococcus capsulatus str. Bath 3102695 YP_114466.1 CDS kdtA NC_002977.6 2182690 2183967 R identified by similarity to SP:P23282; match to protein family HMM PF04413; 3-deoxy-D-manno-octulosonic-acid transferase complement(2182690..2183967) Methylococcus capsulatus str. Bath 3104362 YP_114467.1 CDS rplI NC_002977.6 2183996 2184442 R identified by similarity to SP:P02418; match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158; 50S ribosomal protein L9 complement(2183996..2184442) Methylococcus capsulatus str. Bath 3104361 YP_114468.1 CDS MCA2036 NC_002977.6 2184499 2185380 R identified by similarity to OMNI:NTL03PA04934; hypothetical protein complement(2184499..2185380) Methylococcus capsulatus str. Bath 3104640 YP_114469.1 CDS rpsR NC_002977.6 2185441 2185671 R identified by similarity to SP:P02374; match to protein family HMM PF01084; match to protein family HMM TIGR00165; 30S ribosomal protein S18 complement(2185441..2185671) Methylococcus capsulatus str. Bath 3104639 YP_114470.2 CDS rpsF NC_002977.6 2185728 2186138 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(2185728..2186138) Methylococcus capsulatus str. Bath 3104133 YP_114471.1 CDS gltB NC_002977.6 2186503 2191131 D identified by similarity to SP:P39812; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898; glutamate synthase 2186503..2191131 Methylococcus capsulatus str. Bath 3104459 YP_114472.1 CDS gltD NC_002977.6 2191170 2192609 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase 2191170..2192609 Methylococcus capsulatus str. Bath 3104458 YP_114473.1 CDS MCA2041 NC_002977.6 2192769 2194226 D identified by similarity to SP:P21166; match to protein family HMM PF02386; TrkH family potassium uptake protein 2192769..2194226 Methylococcus capsulatus str. Bath 3103958 YP_114474.1 CDS acs NC_002977.6 2196052 2198040 D Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 2196052..2198040 Methylococcus capsulatus str. Bath 3103274 YP_114475.1 CDS MCA2044 NC_002977.6 2198095 2198433 D identified by similarity to SP:P05826; match to protein family HMM PF00543; nitrogen regulatory protein P-II 2198095..2198433 Methylococcus capsulatus str. Bath 3103273 YP_114476.1 CDS MCA2045 NC_002977.6 2198498 2199070 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(2198498..2199070) Methylococcus capsulatus str. Bath 3104312 YP_114477.1 CDS speE NC_002977.6 2199127 2199984 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(2199127..2199984) Methylococcus capsulatus str. Bath 3104171 YP_114478.1 CDS speA NC_002977.6 2200054 2201931 D catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 2200054..2201931 Methylococcus capsulatus str. Bath 3104170 YP_114479.1 CDS MCA2048 NC_002977.6 2201934 2202803 D identified by similarity to OMNI:CC1574; match to protein family HMM PF03446; Gfo/Idh/MocA family oxidoreductase 2201934..2202803 Methylococcus capsulatus str. Bath 3102281 YP_114480.1 CDS glyQ NC_002977.6 2202857 2203786 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 2202857..2203786 Methylococcus capsulatus str. Bath 3102280 YP_114481.1 CDS glyS NC_002977.6 2203779 2205860 D identified by similarity to SP:P00961; match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211; glycyl-tRNA synthetase subunit beta 2203779..2205860 Methylococcus capsulatus str. Bath 3103025 YP_114482.1 CDS MCA2051 NC_002977.6 2205862 2206401 D Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 2205862..2206401 Methylococcus capsulatus str. Bath 3103024 YP_114483.1 CDS MCA2052 NC_002977.6 2206364 2207113 D identified by similarity to OMNI:NTL03PA00006; match to protein family HMM PF01553; 1-acyl-sn-glycerol-3-phosphate acyltransferase 2206364..2207113 Methylococcus capsulatus str. Bath 3104927 YP_114484.1 CDS MCA2053 NC_002977.6 2207124 2208326 R identified by match to protein family HMM PF00155; aminotransferase complement(2207124..2208326) Methylococcus capsulatus str. Bath 3104367 YP_114485.1 CDS MCA2054 NC_002977.6 2208540 2208860 D hypothetical protein 2208540..2208860 Methylococcus capsulatus str. Bath 3102890 YP_114486.1 CDS MCA2055 NC_002977.6 2208843 2209607 R identified by similarity to OMNI:NTL03PA01734; hypothetical protein complement(2208843..2209607) Methylococcus capsulatus str. Bath 3102889 YP_114487.1 CDS MCA2056 NC_002977.6 2209942 2211390 D identified by similarity to SP:Q55587; match to protein family HMM PF04169; match to protein family HMM PF04174; hypothetical protein 2209942..2211390 Methylococcus capsulatus str. Bath 3103725 YP_114488.1 CDS MCA2057 NC_002977.6 2211392 2212360 D identified by similarity to GP:1651826; match to protein family HMM PF04168; hypothetical protein 2211392..2212360 Methylococcus capsulatus str. Bath 3103724 YP_114489.1 CDS MCA2058 NC_002977.6 2212433 2213845 R transporter complement(2212433..2213845) Methylococcus capsulatus str. Bath 3103858 YP_114490.1 CDS MCA2059 NC_002977.6 2214069 2215715 D identified by match to protein family HMM PF01077; match to protein family HMM PF03460; nitrite/sulfite reductase 2214069..2215715 Methylococcus capsulatus str. Bath 3103857 YP_114491.1 CDS MCA2060 NC_002977.6 2215702 2216187 D identified by similarity to OMNI:NTL03PA01838; match to protein family HMM PF06073; hypothetical protein 2215702..2216187 Methylococcus capsulatus str. Bath 3103329 YP_114492.1 CDS MCA2061 NC_002977.6 2216251 2218710 R identified by similarity to OMNI:NTL03PA03115; hypothetical protein complement(2216251..2218710) Methylococcus capsulatus str. Bath 3104465 YP_114493.1 CDS asd NC_002977.6 2218771 2219793 R identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; aspartate-semialdehyde dehydrogenase complement(2218771..2219793) Methylococcus capsulatus str. Bath 3104464 YP_114494.1 CDS leuB NC_002977.6 2219854 2220936 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(2219854..2220936) Methylococcus capsulatus str. Bath 3104138 YP_114495.1 CDS leuD NC_002977.6 2220965 2221603 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(2220965..2221603) Methylococcus capsulatus str. Bath 3102443 YP_114496.1 CDS leuC NC_002977.6 2221600 2223012 R dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit complement(2221600..2223012) Methylococcus capsulatus str. Bath 3103652 YP_114497.1 CDS adk NC_002977.6 2223048 2223692 R identified by similarity to SP:P39068; match to protein family HMM PF00406; match to protein family HMM PF05191; match to protein family HMM TIGR01351; adenylate kinase complement(2223048..2223692) Methylococcus capsulatus str. Bath 3103651 YP_114498.1 CDS sodB-1 NC_002977.6 2224263 2224895 R identified by similarity to SP:P37369; match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase, Fe complement(2224263..2224895) Methylococcus capsulatus str. Bath 3102328 YP_114499.1 CDS phnA NC_002977.6 2225038 2225379 R identified by match to protein family HMM PF03831; match to protein family HMM TIGR00686; alkylphosphonate utilization protein PhnA complement(2225038..2225379) Methylococcus capsulatus str. Bath 3102327 YP_114500.1 CDS MCA2070 NC_002977.6 2226194 2228509 R identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00277; sensory box protein complement(2226194..2228509) Methylococcus capsulatus str. Bath 3102660 YP_114501.1 CDS MCA2071 NC_002977.6 2228600 2229226 R hypothetical protein complement(2228600..2229226) Methylococcus capsulatus str. Bath 3102659 YP_114502.1 CDS MCA2072 NC_002977.6 2229291 2231468 R identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase complement(2229291..2231468) Methylococcus capsulatus str. Bath 3102623 YP_114503.1 CDS MCA2073 NC_002977.6 2231742 2232050 R hypothetical protein complement(2231742..2232050) Methylococcus capsulatus str. Bath 3103198 YP_114504.1 CDS MCA2074 NC_002977.6 2232358 2234583 D identified by similarity to SP:P76115; match to protein family HMM PF00593; TonB domain-containing protein 2232358..2234583 Methylococcus capsulatus str. Bath 3103197 YP_114505.1 CDS pyrC NC_002977.6 2234643 2235686 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 2234643..2235686 Methylococcus capsulatus str. Bath 3104587 YP_114506.1 CDS vacJ NC_002977.6 2235746 2236600 R identified by similarity to SP:P76506; match to protein family HMM PF04333; vacJ lipoprotein complement(2235746..2236600) Methylococcus capsulatus str. Bath 3104586 YP_114507.1 CDS rnt NC_002977.6 2236751 2237380 D Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 2236751..2237380 Methylococcus capsulatus str. Bath 3103856 YP_114508.1 CDS MCA2078 NC_002977.6 2237391 2237723 R identified by similarity to GP:19880969; match to protein family HMM PF00462; match to protein family HMM TIGR00365; glutaredoxin-like protein complement(2237391..2237723) Methylococcus capsulatus str. Bath 3103855 YP_114509.1 CDS argD NC_002977.6 2237952 2239127 D catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 2237952..2239127 Methylococcus capsulatus str. Bath 3105055 YP_114510.1 CDS atpD-2 NC_002977.6 2239152 2240048 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 2239152..2240048 Methylococcus capsulatus str. Bath 3105054 YP_114511.1 CDS MCA2081 NC_002977.6 2240167 2240730 D hypothetical protein 2240167..2240730 Methylococcus capsulatus str. Bath 3104478 YP_114512.1 CDS ilvD NC_002977.6 2240777 2242465 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 2240777..2242465 Methylococcus capsulatus str. Bath 3104477 YP_114513.1 CDS argE NC_002977.6 2242484 2243650 D catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 2242484..2243650 Methylococcus capsulatus str. Bath 3104536 YP_114514.1 CDS argA NC_002977.6 2243667 2245013 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 2243667..2245013 Methylococcus capsulatus str. Bath 3104535 YP_114515.1 CDS cpdA NC_002977.6 2245019 2245798 D identified by similarity to SP:P36650; match to protein family HMM PF00149; cyclic AMP phosphodiesterase 2245019..2245798 Methylococcus capsulatus str. Bath 3104448 YP_114516.1 CDS MCA2086 NC_002977.6 2245711 2246286 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(2245711..2246286) Methylococcus capsulatus str. Bath 3104447 YP_114517.1 CDS MCA2087 NC_002977.6 2246474 2247136 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; HAD family hydrolase 2246474..2247136 Methylococcus capsulatus str. Bath 3104150 YP_114518.1 CDS MCA2088 NC_002977.6 2247145 2247375 R identified by similarity to GP:17427822; match to protein family HMM PF01206; hypothetical protein complement(2247145..2247375) Methylococcus capsulatus str. Bath 3104149 YP_114519.1 CDS cysG NC_002977.6 2247424 2248848 D identified by similarity to SP:P11098; match to protein family HMM PF00590; match to protein family HMM TIGR01469; match to protein family HMM TIGR01470; precorrin-2 oxidase; siroheme synthase; ferrochelatase 2247424..2248848 Methylococcus capsulatus str. Bath 3103677 YP_114520.1 CDS MCA2090 NC_002977.6 2248861 2249082 R identified by similarity to GP:17429853; match to protein family HMM PF03884; hypothetical protein complement(2248861..2249082) Methylococcus capsulatus str. Bath 3102424 YP_114521.1 CDS MCA2091 NC_002977.6 2249090 2249857 R identified by similarity to SP:P36680; match to protein family HMM PF07072; hypothetical protein complement(2249090..2249857) Methylococcus capsulatus str. Bath 3102423 YP_114522.1 CDS MCA2092 NC_002977.6 2249835 2249942 R hypothetical protein complement(2249835..2249942) Methylococcus capsulatus str. Bath 3104006 YP_114523.1 CDS coaE NC_002977.6 2249959 2250555 R identified by similarity to SP:P36679; match to protein family HMM PF01121; match to protein family HMM TIGR00152; dephospho-CoA kinase complement(2249959..2250555) Methylococcus capsulatus str. Bath 3104005 YP_114524.1 CDS pilD NC_002977.6 2250563 2251432 R identified by similarity to SP:P22610; match to protein family HMM PF01478; match to protein family HMM PF06750; leader peptidase PilD complement(2250563..2251432) Methylococcus capsulatus str. Bath 3104286 YP_114525.1 CDS pilC NC_002977.6 2251456 2252670 R identified by similarity to GP:151066; match to protein family HMM PF00482; type IV pilin biogenesis protein PilC complement(2251456..2252670) Methylococcus capsulatus str. Bath 3104285 YP_114526.1 CDS pilB NC_002977.6 2252675 2254390 R identified by similarity to SP:P22608; match to protein family HMM PF00437; match to protein family HMM PF05157; type IV pilus assembly protein PilB complement(2252675..2254390) Methylococcus capsulatus str. Bath 3103658 YP_114527.1 CDS valS NC_002977.6 2254440 2257205 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(2254440..2257205) Methylococcus capsulatus str. Bath 3103657 YP_114528.1 CDS MCA2098 NC_002977.6 2257273 2257731 R identified by similarity to SP:P28905; match to protein family HMM PF04364; DNA polymerase III subunit chi complement(2257273..2257731) Methylococcus capsulatus str. Bath 3104101 YP_114529.1 CDS pepA NC_002977.6 2257728 2259221 R identified by similarity to SP:P11648; match to protein family HMM PF00883; match to protein family HMM PF02789; aminopeptidase complement(2257728..2259221) Methylococcus capsulatus str. Bath 3104100 YP_114530.1 CDS MCA2100 NC_002977.6 2259421 2260440 D identified by similarity to OMNI:NTL03PA03828; match to protein family HMM PF03739; hypothetical protein 2259421..2260440 Methylococcus capsulatus str. Bath 3102803 YP_114531.1 CDS MCA2101 NC_002977.6 2260437 2261507 D identified by similarity to SP:P39341; match to protein family HMM PF03739; hypothetical protein 2260437..2261507 Methylococcus capsulatus str. Bath 3102802 YP_114532.1 CDS MCA2102 NC_002977.6 2261513 2261956 R identified by similarity to OMNI:NTL03PA03826; match to protein family HMM PF06271; hypothetical protein complement(2261513..2261956) Methylococcus capsulatus str. Bath 3104607 YP_114533.1 CDS MCA2103 NC_002977.6 2261976 2262245 R hypothetical protein complement(2261976..2262245) Methylococcus capsulatus str. Bath 3104606 YP_114534.1 CDS MCA2107 NC_002977.6 2263027 2267397 D identified by similarity to GP:9715733; match to protein family HMM PF00132; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733; nonribosomal peptide synthetase 2263027..2267397 Methylococcus capsulatus str. Bath 3102385 YP_114535.1 CDS MCA2108 NC_002977.6 2267423 2268217 D hypothetical protein 2267423..2268217 Methylococcus capsulatus str. Bath 3102384 YP_114536.1 CDS MCA2110 NC_002977.6 2269135 2270448 D identified by match to protein family HMM PF02321; outer membrane efflux protein 2269135..2270448 Methylococcus capsulatus str. Bath 3103608 YP_114537.1 CDS MCA2111 NC_002977.6 2270530 2270919 R hypothetical protein complement(2270530..2270919) Methylococcus capsulatus str. Bath 3103607 YP_114538.1 CDS MCA2112 NC_002977.6 2270960 2272273 R identified by similarity to GP:4378852; hypothetical protein complement(2270960..2272273) Methylococcus capsulatus str. Bath 3102923 YP_114539.1 CDS MCA2113 NC_002977.6 2272710 2273135 D hypothetical protein 2272710..2273135 Methylococcus capsulatus str. Bath 3102922 YP_114540.1 CDS mltB NC_002977.6 2273116 2274237 R membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; murein hydrolase B complement(2273116..2274237) Methylococcus capsulatus str. Bath 3104890 YP_114541.1 CDS MCA2115 NC_002977.6 2274310 2275515 D identified by match to protein family HMM PF01464; transglycosylase 2274310..2275515 Methylococcus capsulatus str. Bath 3104889 YP_114542.1 CDS MCA2116 NC_002977.6 2275520 2276287 R identified by match to protein family HMM PF01816; hypothetical protein complement(2275520..2276287) Methylococcus capsulatus str. Bath 3103512 YP_114543.1 CDS MCA2117 NC_002977.6 2276280 2277044 R identified by match to protein family HMM PF00023; match to protein family HMM PF00581; rhodanese-like domain/ankyrin repeat-containing protein complement(2276280..2277044) Methylococcus capsulatus str. Bath 3103511 YP_114544.1 CDS MCA2118 NC_002977.6 2277230 2278453 D identified by similarity to OMNI:NTL01SS00882; match to protein family HMM PF03065; hypothetical protein 2277230..2278453 Methylococcus capsulatus str. Bath 3102501 YP_114545.1 CDS MCA2119 NC_002977.6 2278544 2280004 D identified by similarity to OMNI:NTL01SS00882; hypothetical protein 2278544..2280004 Methylococcus capsulatus str. Bath 3102500 YP_114546.1 CDS MCA2120 NC_002977.6 2280150 2280887 D identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp/FNR family transcriptional regulator 2280150..2280887 Methylococcus capsulatus str. Bath 3102509 YP_114547.1 CDS MCA2121 NC_002977.6 2280877 2281641 R identified by match to protein family HMM PF01061; ABC transporter permease complement(2280877..2281641) Methylococcus capsulatus str. Bath 3102508 YP_114548.1 CDS MCA2122 NC_002977.6 2281649 2282575 R identified by similarity to SP:P36879; match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2281649..2282575) Methylococcus capsulatus str. Bath 3104519 YP_114549.1 CDS MCA2123 NC_002977.6 2282760 2284193 D identified by match to protein family HMM PF02541; Ppx/GppA phosphatase 2282760..2284193 Methylococcus capsulatus str. Bath 3104518 YP_114550.1 CDS MCA2124 NC_002977.6 2284446 2285621 R identified by similarity to SP:P71243; match to protein family HMM PF00534; colanic acid biosynthesis glycosyl transferase complement(2284446..2285621) Methylococcus capsulatus str. Bath 3104717 YP_114551.1 CDS MCA2125 NC_002977.6 2285647 2286828 R identified by match to protein family HMM PF01041; aminotransferase complement(2285647..2286828) Methylococcus capsulatus str. Bath 3104716 YP_114552.1 CDS MCA2126 NC_002977.6 2287047 2288147 D identified by match to protein family HMM PF00534; glycosyl transferase family protein 2287047..2288147 Methylococcus capsulatus str. Bath 3103459 YP_114553.1 CDS MCA2127 NC_002977.6 2288140 2289957 R identified by similarity to SP:P54420; match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; asparagine synthetase complement(2288140..2289957) Methylococcus capsulatus str. Bath 3103458 YP_114554.1 CDS MCA2128 NC_002977.6 2290054 2290839 R hypothetical protein complement(2290054..2290839) Methylococcus capsulatus str. Bath 3104144 YP_114555.1 CDS MCA2129 NC_002977.6 2290985 2292709 R identified by similarity to GP:4580028; multicopper oxidase complement(2290985..2292709) Methylococcus capsulatus str. Bath 3104143 YP_114556.1 CDS MCA2130 NC_002977.6 2292803 2293393 R identified by similarity to GP:3282847; hypothetical protein complement(2292803..2293393) Methylococcus capsulatus str. Bath 3103516 YP_114557.1 CDS MCA2131 NC_002977.6 2293572 2296646 R AcrB/AcrD/AcrF family protein complement(2293572..2296646) Methylococcus capsulatus str. Bath 3103515 YP_114558.1 CDS MCA2132 NC_002977.6 2296643 2297725 R identified by similarity to OMNI:VC0913; match to protein family HMM PF00529; match to protein family HMM TIGR01730; HlyD family secretion protein complement(2296643..2297725) Methylococcus capsulatus str. Bath 3103474 YP_114559.1 CDS MCA2133 NC_002977.6 2297773 2298036 R identified by similarity to SP:P37687; match to protein family HMM PF00462; match to protein family HMM TIGR02181; glutaredoxin family protein complement(2297773..2298036) Methylococcus capsulatus str. Bath 3103473 YP_114560.1 CDS trxA-2 NC_002977.6 2298409 2298828 D identified by similarity to SP:P33636; match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 2298409..2298828 Methylococcus capsulatus str. Bath 3103221 YP_114561.1 CDS MCA2135 NC_002977.6 2299074 2299181 D hypothetical protein 2299074..2299181 Methylococcus capsulatus str. Bath 3103220 YP_114562.1 CDS amt-3 NC_002977.6 2299172 2300614 R identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter complement(2299172..2300614) Methylococcus capsulatus str. Bath 3104888 YP_114563.1 CDS MCA2137 NC_002977.6 2300645 2300983 R identified by similarity to SP:P38504; match to protein family HMM PF00543; nitrogen regulatory protein P-II complement(2300645..2300983) Methylococcus capsulatus str. Bath 3104887 YP_114564.1 CDS MCA2138 NC_002977.6 2301244 2301495 D identified by similarity to SP:Q46868; match to protein family HMM PF04380; hypothetical protein 2301244..2301495 Methylococcus capsulatus str. Bath 3103328 YP_114565.1 CDS MCA2139 NC_002977.6 2301564 2303021 D identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368; Mg chelatase-like protein 2301564..2303021 Methylococcus capsulatus str. Bath 3105002 YP_114566.1 CDS rep NC_002977.6 2303018 2305021 D identified by similarity to SP:P09980; match to protein family HMM PF00580; match to protein family HMM TIGR01074; ATP-dependent DNA helicase Rep 2303018..2305021 Methylococcus capsulatus str. Bath 3105001 YP_114567.1 CDS MCA2141 NC_002977.6 2305225 2305380 D hypothetical protein 2305225..2305380 Methylococcus capsulatus str. Bath 3102856 YP_114568.1 CDS MCA2144 NC_002977.6 2306347 2306856 R lipoprotein complement(2306347..2306856) Methylococcus capsulatus str. Bath 3104579 YP_114569.1 CDS MCA2145 NC_002977.6 2306846 2307610 R identified by similarity to OMNI:NTL01PM1828; hypothetical protein complement(2306846..2307610) Methylococcus capsulatus str. Bath 3104578 YP_114570.1 CDS MCA2146 NC_002977.6 2307607 2309169 R identified by similarity to OMNI:NTL01PM1827; match to protein family HMM PF03781; hypothetical protein complement(2307607..2309169) Methylococcus capsulatus str. Bath 3103084 YP_114571.1 CDS MCA2147 NC_002977.6 2309164 2310600 D identified by match to protein family HMM PF00854; proton-dependent oligopeptide transporter family protein 2309164..2310600 Methylococcus capsulatus str. Bath 3103083 YP_114572.1 CDS ggt NC_002977.6 2310608 2312338 R identified by similarity to SP:P18956; match to protein family HMM PF01019; match to protein family HMM TIGR00066; gamma-glutamyltranspeptidase complement(2310608..2312338) Methylococcus capsulatus str. Bath 3103485 YP_114573.1 CDS MCA2149 NC_002977.6 2312401 2313957 R hypothetical protein complement(2312401..2313957) Methylococcus capsulatus str. Bath 3103484 YP_114574.1 CDS MCA2150 NC_002977.6 2314077 2315351 R hypothetical protein complement(2314077..2315351) Methylococcus capsulatus str. Bath 3102271 YP_114575.1 CDS MCA2151 NC_002977.6 2315597 2316274 R identified by similarity to OMNI:NTL03PA01960; match to protein family HMM PF00313; match to protein family HMM PF06961; cold-shock domain-contain protein complement(2315597..2316274) Methylococcus capsulatus str. Bath 3102270 YP_114576.1 CDS MCA2152 NC_002977.6 2316331 2319561 R identified by similarity to OMNI:VCA0638; AcrB/AcrD/AcrF family protein complement(2316331..2319561) Methylococcus capsulatus str. Bath 3103728 YP_114577.1 CDS MCA2153 NC_002977.6 2319580 2320659 R identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; HlyD family secretion protein complement(2319580..2320659) Methylococcus capsulatus str. Bath 3103727 YP_114578.1 CDS MCA2154 NC_002977.6 2320683 2322044 R identified by similarity to SP:P11092; match to protein family HMM PF02321; outer membrane protein CyaE complement(2320683..2322044) Methylococcus capsulatus str. Bath 3104566 YP_114579.1 CDS sqr NC_002977.6 2322290 2323564 D identified by similarity to GP:2385380; sulfide-quinone reductase 2322290..2323564 Methylococcus capsulatus str. Bath 3104565 YP_114580.1 CDS moaB NC_002977.6 2323620 2324138 D identified by similarity to SP:P30746; match to protein family HMM PF00994; match to protein family HMM TIGR00177; molybdenum cofactor biosynthesis protein B 2323620..2324138 Methylococcus capsulatus str. Bath 3104158 YP_114581.1 CDS MCA2157 NC_002977.6 2324309 2325601 D identified by similarity to GP:17428575; match to protein family HMM PF03631; match to protein family HMM TIGR00765; ribonuclease BN 2324309..2325601 Methylococcus capsulatus str. Bath 3103490 YP_114582.1 CDS MCA2158 NC_002977.6 2325627 2326511 R identified by match to protein family HMM PF00165; match to protein family HMM PF06445; AraC family transcriptional regulator complement(2325627..2326511) Methylococcus capsulatus str. Bath 3103489 YP_114583.1 CDS MCA2160 NC_002977.6 2326900 2330088 D identified by similarity to GP:4325061; cytochrome c5530 family protein 2326900..2330088 Methylococcus capsulatus str. Bath 3102958 YP_114584.1 CDS MCA2161 NC_002977.6 2330552 2333164 R hypothetical protein complement(2330552..2333164) Methylococcus capsulatus str. Bath 3102957 YP_114585.1 CDS MCA2162 NC_002977.6 2333352 2333948 R identified by similarity to GP:17132783; match to protein family HMM PF05685; hypothetical protein complement(2333352..2333948) Methylococcus capsulatus str. Bath 3102707 YP_114586.1 CDS MCA2163 NC_002977.6 2334444 2334776 D hypothetical protein 2334444..2334776 Methylococcus capsulatus str. Bath 3102706 YP_114587.1 CDS MCA2164 NC_002977.6 2334837 2337980 R identified by similarity to SP:O34623; match to protein family HMM PF01336; match to protein family HMM PF02231; match to protein family HMM TIGR00594; DNA polymerase III subunit alpha complement(2334837..2337980) Methylococcus capsulatus str. Bath 3104948 YP_114588.1 CDS MCA2165 NC_002977.6 2337964 2339442 R identified by similarity to OMNI:NTL03PA00671; hypothetical protein complement(2337964..2339442) Methylococcus capsulatus str. Bath 3103635 YP_114589.1 CDS MCA2166 NC_002977.6 2339450 2340073 R identified by similarity to GP:9946550; hypothetical protein complement(2339450..2340073) Methylococcus capsulatus str. Bath 3103972 YP_114590.1 CDS lexA NC_002977.6 2340073 2340681 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(2340073..2340681) Methylococcus capsulatus str. Bath 3103971 YP_114591.1 CDS MCA2169 NC_002977.6 2341545 2342924 D identified by match to protein family HMM PF02012; BNR repeat-containing protein 2341545..2342924 Methylococcus capsulatus str. Bath 3102237 YP_114592.1 CDS MCA2170 NC_002977.6 2342921 2343355 D identified by similarity to SP:P12376; match to protein family HMM PF04234; copper resistance protein 2342921..2343355 Methylococcus capsulatus str. Bath 3102236 YP_114593.1 CDS MCA2171 NC_002977.6 2344223 2345749 D hypothetical protein 2344223..2345749 Methylococcus capsulatus str. Bath 3102482 YP_114594.1 CDS MCA2172 NC_002977.6 2345746 2346414 D identified by similarity to OMNI:NTL03PA02857; match to protein family HMM PF00005; ABC transporter ATP-binding protein 2345746..2346414 Methylococcus capsulatus str. Bath 3102481 YP_114595.1 CDS MCA2173 NC_002977.6 2346411 2347592 D identified by similarity to OMNI:DRB0050; hypothetical protein 2346411..2347592 Methylococcus capsulatus str. Bath 3104485 YP_114596.1 CDS MCA2174 NC_002977.6 2347601 2348506 D identified by similarity to GP:4249623; match to protein family HMM PF01297; adhesion lipoprotein 2347601..2348506 Methylococcus capsulatus str. Bath 3104768 YP_114597.1 CDS MCA2175 NC_002977.6 2348517 2348867 D identified by similarity to OMNI:NTL01BH0645; hypothetical protein 2348517..2348867 Methylococcus capsulatus str. Bath 3103881 YP_114598.1 CDS MCA2176 NC_002977.6 2349056 2349442 R hypothetical protein complement(2349056..2349442) Methylococcus capsulatus str. Bath 3104828 YP_114599.1 CDS MCA2177 NC_002977.6 2349537 2349917 D hypothetical protein 2349537..2349917 Methylococcus capsulatus str. Bath 3103880 YP_114600.1 CDS MCA2178 NC_002977.6 2350003 2351103 D identified by match to protein family HMM PF01609; ISMca1, transposase 2350003..2351103 Methylococcus capsulatus str. Bath 3104827 YP_114601.1 CDS MCA2179 NC_002977.6 2351309 2351521 D lipoprotein 2351309..2351521 Methylococcus capsulatus str. Bath 3102572 YP_114602.1 CDS MCA2180 NC_002977.6 2351673 2353970 D identified by match to protein family HMM PF00593; TonB-dependent receptor 2351673..2353970 Methylococcus capsulatus str. Bath 3102571 YP_114603.1 CDS MCA2181 NC_002977.6 2354278 2355090 R identified by match to protein family HMM PF00034; cytochrome c family protein complement(2354278..2355090) Methylococcus capsulatus str. Bath 3102739 YP_114604.1 CDS MCA2182 NC_002977.6 2355163 2355750 R identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; decarboxylase complement(2355163..2355750) Methylococcus capsulatus str. Bath 3102738 YP_114605.1 CDS MCA2183 NC_002977.6 2355852 2356271 D identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein 2355852..2356271 Methylococcus capsulatus str. Bath 3103381 YP_114606.1 CDS MCA2184 NC_002977.6 2356275 2356889 R identified by similarity to SP:P37194; match to protein family HMM PF03843; Slp family outer membrane lipoprotein complement(2356275..2356889) Methylococcus capsulatus str. Bath 3103380 YP_114607.1 CDS MCA2185 NC_002977.6 2356939 2357325 R identified by similarity to OMNI:NTL03PA05329; lipoprotein complement(2356939..2357325) Methylococcus capsulatus str. Bath 3104776 YP_114608.1 CDS MCA2186 NC_002977.6 2357411 2358256 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase 2357411..2358256 Methylococcus capsulatus str. Bath 3104775 YP_114609.1 CDS MCA2187 NC_002977.6 2358721 2360790 R identified by match to protein family HMM PF00245; alkaline phosphatase complement(2358721..2360790) Methylococcus capsulatus str. Bath 3102589 YP_114610.1 CDS MCA2188 NC_002977.6 2360898 2361518 R hypothetical protein complement(2360898..2361518) Methylococcus capsulatus str. Bath 3102588 YP_114611.1 CDS MCA2189 NC_002977.6 2361459 2363261 D cytochrome c family protein 2361459..2363261 Methylococcus capsulatus str. Bath 3102295 YP_114612.1 CDS MCA2191 NC_002977.6 2364364 2366460 D hypothetical protein 2364364..2366460 Methylococcus capsulatus str. Bath 3102294 YP_114613.1 CDS MCA2192 NC_002977.6 2366512 2367855 D identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase 2366512..2367855 Methylococcus capsulatus str. Bath 3102208 YP_114614.1 CDS MCA2193 NC_002977.6 2367865 2368827 R identified by match to protein family HMM PF00535; glycosyl transferase family protein complement(2367865..2368827) Methylococcus capsulatus str. Bath 3102207 YP_114615.1 CDS MCA2194 NC_002977.6 2368850 2369254 R identified by similarity to OMNI:NTL03PA04821; match to protein family HMM PF04138; hypothetical protein complement(2368850..2369254) Methylococcus capsulatus str. Bath 3103472 YP_114616.1 CDS MCA2196 NC_002977.6 2369428 2370678 R hypothetical protein complement(2369428..2370678) Methylococcus capsulatus str. Bath 3103471 YP_114617.1 CDS MCA2197 NC_002977.6 2370984 2372135 R identified by similarity to GP:19916330; hypothetical protein complement(2370984..2372135) Methylococcus capsulatus str. Bath 3102486 YP_114618.1 CDS MCA2198 NC_002977.6 2372360 2373649 R hypothetical protein complement(2372360..2373649) Methylococcus capsulatus str. Bath 3102485 YP_114619.1 CDS MCA2199 NC_002977.6 2374115 2375443 R identified by match to protein family HMM PF00023; ankyrin repeat-containing protein complement(2374115..2375443) Methylococcus capsulatus str. Bath 3102134 YP_114620.1 CDS MCA2200 NC_002977.6 2375875 2376594 R identified by similarity to GP:7159038; match to protein family HMM PF01292; cytochrome c' family protein complement(2375875..2376594) Methylococcus capsulatus str. Bath 3102133 YP_114621.1 CDS uvrB NC_002977.6 2376669 2378663 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(2376669..2378663) Methylococcus capsulatus str. Bath 3103248 YP_114622.1 CDS MCA2202 NC_002977.6 2378928 2380109 D identified by similarity to SP:P23034; match to protein family HMM PF00155; aspartate aminotransferase 2378928..2380109 Methylococcus capsulatus str. Bath 3105073 YP_114623.1 CDS galU NC_002977.6 2380159 2381037 R identified by similarity to OMNI:NMB0638; match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase complement(2380159..2381037) Methylococcus capsulatus str. Bath 3103235 YP_114624.1 CDS cysC NC_002977.6 2381044 2381655 R identified by similarity to SP:P23846; match to protein family HMM PF01583; match to protein family HMM TIGR00455; adenylylsulfate kinase complement(2381044..2381655) Methylococcus capsulatus str. Bath 3103234 YP_114625.1 CDS MCA2205 NC_002977.6 2381731 2382426 R identified by similarity to OMNI:NTL03PA03179; match to protein family HMM PF00849; match to protein family HMM TIGR00093; RNA pseudouridine synthase complement(2381731..2382426) Methylococcus capsulatus str. Bath 3104279 YP_114626.1 CDS scpB NC_002977.6 2382587 2383192 R identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281; segregation and condensation protein B complement(2382587..2383192) Methylococcus capsulatus str. Bath 3104278 YP_114627.1 CDS scpA NC_002977.6 2383194 2384009 R identified by similarity to SP:P35154; match to protein family HMM PF02616; segregation and condensation protein A complement(2383194..2384009) Methylococcus capsulatus str. Bath 3103715 YP_114628.1 CDS MCA2208 NC_002977.6 2384006 2384623 R identified by match to protein family HMM PF02163; hypothetical protein complement(2384006..2384623) Methylococcus capsulatus str. Bath 3103714 YP_114629.1 CDS MCA2209 NC_002977.6 2384709 2385332 R identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein complement(2384709..2385332) Methylococcus capsulatus str. Bath 3102131 YP_114630.1 CDS MCA2210 NC_002977.6 2385383 2385949 R identified by similarity to GP:15980083; match to protein family HMM PF00814; hypothetical protein complement(2385383..2385949) Methylococcus capsulatus str. Bath 3102130 YP_114631.1 CDS MCA2211 NC_002977.6 2386201 2386947 D identified by match to protein family HMM PF00899; match to protein family HMM PF05237; HesA/MoeB/ThiF family protein 2386201..2386947 Methylococcus capsulatus str. Bath 3102817 YP_114632.1 CDS MCA2212 NC_002977.6 2387051 2388028 D identified by similarity to OMNI:NTL03PA00070; match to protein family HMM PF04055; hypothetical protein 2387051..2388028 Methylococcus capsulatus str. Bath 3102816 YP_114633.1 CDS kdpE NC_002977.6 2388047 2388742 R identified by similarity to SP:P21866; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA binding response regulator KdpE complement(2388047..2388742) Methylococcus capsulatus str. Bath 3102548 YP_114634.1 CDS kdpD NC_002977.6 2388746 2391478 R identified by similarity to SP:P21865; match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702; sensor histidine kinase KdpD complement(2388746..2391478) Methylococcus capsulatus str. Bath 3102547 YP_114635.1 CDS kdpC NC_002977.6 2391675 2392247 R One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C complement(2391675..2392247) Methylococcus capsulatus str. Bath 3104691 YP_114636.1 CDS kdpB NC_002977.6 2392257 2394329 R identified by similarity to SP:P03960; match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01497; K+-transporting ATPase subunit B complement(2392257..2394329) Methylococcus capsulatus str. Bath 3104690 YP_114637.1 CDS kdpA NC_002977.6 2394342 2396129 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(2394342..2396129) Methylococcus capsulatus str. Bath 3103612 YP_114638.1 CDS kdpF NC_002977.6 2396129 2396461 R identified by match to protein family HMM TIGR02115; K+-transporting ATPase subunit F complement(2396129..2396461) Methylococcus capsulatus str. Bath 3103611 YP_114639.1 CDS fhs NC_002977.6 2396781 2398454 D catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 2396781..2398454 Methylococcus capsulatus str. Bath 3102111 YP_114640.1 CDS MCA2220 NC_002977.6 2398506 2399354 R identified by similarity to SP:P14489; match to protein family HMM PF00905; beta-lactamase complement(2398506..2399354) Methylococcus capsulatus str. Bath 3102110 YP_114641.1 CDS phoC NC_002977.6 2399510 2400361 R identified by similarity to SP:P14924; match to protein family HMM PF01569; acid phosphatase complement(2399510..2400361) Methylococcus capsulatus str. Bath 3103096 YP_114642.1 CDS cfa NC_002977.6 2401032 2402189 D catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase 2401032..2402189 Methylococcus capsulatus str. Bath 3104994 YP_114643.1 CDS MCA2224 NC_002977.6 2402605 2403987 D identified by match to protein family HMM PF00801; PKD domain-containing protein 2402605..2403987 Methylococcus capsulatus str. Bath 3103398 YP_114644.1 CDS MCA2225 NC_002977.6 2404046 2405629 R hypothetical protein complement(2404046..2405629) Methylococcus capsulatus str. Bath 3103397 YP_114645.1 CDS MCA2226 NC_002977.6 2405747 2407378 D identified by similarity to GP:9946574; hypothetical protein 2405747..2407378 Methylococcus capsulatus str. Bath 3103286 YP_114646.1 CDS MCA2227 NC_002977.6 2407392 2417441 D identified by similarity to OMNI:NTL01RSA0540; match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01901; hemagglutinin-like protein 2407392..2417441 Methylococcus capsulatus str. Bath 3103285 YP_114647.1 CDS MCA2228 NC_002977.6 2417594 2417749 R hypothetical protein complement(2417594..2417749) Methylococcus capsulatus str. Bath 3105036 YP_114648.1 CDS MCA2229 NC_002977.6 2418061 2418738 D hypothetical protein 2418061..2418738 Methylococcus capsulatus str. Bath 3105035 YP_114649.1 CDS MCA2230 NC_002977.6 2419226 2420314 D identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 2419226..2420314 Methylococcus capsulatus str. Bath 3102334 YP_114650.1 CDS MCA2231 NC_002977.6 2420397 2423510 D identified by match to protein family HMM PF00873; HAE1 efflux family protein 2420397..2423510 Methylococcus capsulatus str. Bath 3102333 YP_114651.1 CDS MCA2232 NC_002977.6 2423503 2424930 D identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; outer membrane efflux family protein 2423503..2424930 Methylococcus capsulatus str. Bath 3104225 YP_114652.1 CDS MCA2234 NC_002977.6 2425624 2426346 R hypothetical protein complement(2425624..2426346) Methylococcus capsulatus str. Bath 3104874 YP_114653.1 CDS MCA2235 NC_002977.6 2426408 2428165 R identified by similarity to OMNI:NTL03PA00697; hypothetical protein complement(2426408..2428165) Methylococcus capsulatus str. Bath 3104873 YP_114654.1 CDS MCA2236 NC_002977.6 2428226 2428888 R identified by similarity to OMNI:NTL03PA00696; TonB-dependent receptor complement(2428226..2428888) Methylococcus capsulatus str. Bath 3102711 YP_114655.1 CDS MCA2237 NC_002977.6 2428901 2429305 R identified by similarity to SP:P18784; match to protein family HMM PF02472; biopolymer ExbD/TolR family transporter complement(2428901..2429305) Methylococcus capsulatus str. Bath 3102710 YP_114656.1 CDS MCA2238 NC_002977.6 2429302 2431125 R identified by match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein complement(2429302..2431125) Methylococcus capsulatus str. Bath 3104852 YP_114657.1 CDS MCA2239 NC_002977.6 2431598 2431747 D hypothetical protein 2431598..2431747 Methylococcus capsulatus str. Bath 3104851 YP_114658.1 CDS MCA2240 NC_002977.6 2431876 2432112 R hypothetical protein complement(2431876..2432112) Methylococcus capsulatus str. Bath 3104625 YP_114659.1 CDS MCA2241 NC_002977.6 2432232 2433233 R identified by match to protein family HMM PF00534; glycosyl transferase family protein complement(2432232..2433233) Methylococcus capsulatus str. Bath 3104624 YP_114660.1 CDS MCA2242 NC_002977.6 2433190 2433996 R identified by match to protein family HMM PF00149; calcineurin-like phosphoesterase complement(2433190..2433996) Methylococcus capsulatus str. Bath 3103085 YP_114661.1 CDS MCA2243 NC_002977.6 2434326 2435255 R identified by similarity to OMNI:NTL03PA04657; match to protein family HMM TIGR01777; hypothetical protein complement(2434326..2435255) Methylococcus capsulatus str. Bath 3102705 YP_114662.1 CDS MCA2244 NC_002977.6 2435546 2435677 R hypothetical protein complement(2435546..2435677) Methylococcus capsulatus str. Bath 3102704 YP_114663.1 CDS MCA2245 NC_002977.6 2435927 2436049 R hypothetical protein complement(2435927..2436049) Methylococcus capsulatus str. Bath 3102285 YP_114664.1 CDS rplU NC_002977.6 2436270 2436581 D identified by similarity to SP:P02422; match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 2436270..2436581 Methylococcus capsulatus str. Bath 3102284 YP_114665.1 CDS rpmA NC_002977.6 2436602 2436859 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 2436602..2436859 Methylococcus capsulatus str. Bath 3102542 YP_114666.1 CDS obgE NC_002977.6 2436920 2437957 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 2436920..2437957 Methylococcus capsulatus str. Bath 3102541 YP_114667.1 CDS proB NC_002977.6 2437941 2439065 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 2437941..2439065 Methylococcus capsulatus str. Bath 3104430 YP_114668.1 CDS rpsT NC_002977.6 2439112 2439390 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(2439112..2439390) Methylococcus capsulatus str. Bath 3104429 YP_114669.1 CDS mviN NC_002977.6 2439546 2441087 D identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695; membrane protein MviN 2439546..2441087 Methylococcus capsulatus str. Bath 3105025 YP_114670.1 CDS ribF NC_002977.6 2441096 2442025 D identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; riboflavin biosynthesis protein RibF 2441096..2442025 Methylococcus capsulatus str. Bath 3105024 YP_114671.1 CDS ileS NC_002977.6 2442054 2444873 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 2442054..2444873 Methylococcus capsulatus str. Bath 3103165 YP_114672.1 CDS lspA NC_002977.6 2444870 2445346 D identified by match to protein family HMM PF01252; match to protein family HMM TIGR00077; signal peptidase II 2444870..2445346 Methylococcus capsulatus str. Bath 3103164 YP_114673.1 CDS MCA2255 NC_002977.6 2445401 2445748 D hypothetical protein 2445401..2445748 Methylococcus capsulatus str. Bath 3104371 YP_114674.1 CDS MCA2256 NC_002977.6 2445721 2446344 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(2445721..2446344) Methylococcus capsulatus str. Bath 3104370 YP_114675.1 CDS MCA2257 NC_002977.6 2446457 2447482 D identified by match to protein family HMM PF00529; HlyD family secretion protein 2446457..2447482 Methylococcus capsulatus str. Bath 3103213 YP_114676.1 CDS MCA2258 NC_002977.6 2447489 2449039 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter 2447489..2449039 Methylococcus capsulatus str. Bath 3103212 YP_114677.1 CDS MCA2259 NC_002977.6 2449169 2452378 D identified by similarity to GP:4325061; cytochrome c5530 family protein 2449169..2452378 Methylococcus capsulatus str. Bath 3103092 YP_114678.1 CDS metE NC_002977.6 2452560 2454848 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(2452560..2454848) Methylococcus capsulatus str. Bath 3102988 YP_114679.1 CDS metR NC_002977.6 2454949 2455890 D identified by similarity to SP:P45349; match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator MetR 2454949..2455890 Methylococcus capsulatus str. Bath 3102987 YP_114680.1 CDS MCA2262 NC_002977.6 2456492 2457772 D identified by similarity to GP:19881003; match to protein family HMM PF02321; outer membrane heavy metal efflux protein 2456492..2457772 Methylococcus capsulatus str. Bath 3102273 YP_114681.1 CDS MCA2263 NC_002977.6 2457769 2459037 D identified by similarity to SP:P77239; match to protein family HMM TIGR01730; heavy metal efflux pump membrane fusion protein 2457769..2459037 Methylococcus capsulatus str. Bath 3102272 YP_114682.1 CDS MCA2264 NC_002977.6 2459039 2462239 D identified by match to protein family HMM TIGR00914; CzcA family heavy metal efflux protein 2459039..2462239 Methylococcus capsulatus str. Bath 3104083 YP_114683.1 CDS MCA2265 NC_002977.6 2462413 2462868 R identified by similarity to SP:P45945; match to protein family HMM PF00903; hypothetical protein complement(2462413..2462868) Methylococcus capsulatus str. Bath 3104082 YP_114684.1 CDS MCA2266 NC_002977.6 2463196 2463432 D hypothetical protein 2463196..2463432 Methylococcus capsulatus str. Bath 3104915 YP_114685.1 CDS MCA2267 NC_002977.6 2463480 2464091 R identified by similarity to GP:10241924; match to protein family HMM PF00881; nitroreductase complement(2463480..2464091) Methylococcus capsulatus str. Bath 3104914 YP_114686.1 CDS MCA2268 NC_002977.6 2464121 2464828 R identified by similarity to GP:17429227; match to protein family HMM PF02678; hypothetical protein complement(2464121..2464828) Methylococcus capsulatus str. Bath 3102759 YP_114687.1 CDS MCA2269 NC_002977.6 2464933 2465835 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 2464933..2465835 Methylococcus capsulatus str. Bath 3102758 YP_114688.1 CDS ilvB NC_002977.6 2466156 2467886 D identified by similarity to SP:P00893; match to protein family HMM PF00205; match to protein family HMM PF02776; match to protein family HMM TIGR00118; acetolactate synthase large subunit 2466156..2467886 Methylococcus capsulatus str. Bath 3103883 YP_114689.1 CDS ilvN NC_002977.6 2467889 2468380 D identified by similarity to SP:P00894; match to protein family HMM PF01842; match to protein family HMM TIGR00119; acetolactate synthase small subunit 2467889..2468380 Methylococcus capsulatus str. Bath 3103882 YP_114690.1 CDS ilvC NC_002977.6 2468442 2469458 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 2468442..2469458 Methylococcus capsulatus str. Bath 3104528 YP_114691.1 CDS pssA NC_002977.6 2469507 2470253 D identified by similarity to SP:Q48269; match to protein family HMM PF01066; match to protein family HMM TIGR00473; CDP-diacylglycerol--serine O-phosphatidyltransferase 2469507..2470253 Methylococcus capsulatus str. Bath 3104132 YP_114692.1 CDS leuA NC_002977.6 2470514 2472058 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 2470514..2472058 Methylococcus capsulatus str. Bath 3102618 YP_114693.1 CDS MCA2276 NC_002977.6 2472051 2472782 D identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758; phage SPO1 DNA polymerase-like protein 2472051..2472782 Methylococcus capsulatus str. Bath 3102617 YP_114694.1 CDS rimI NC_002977.6 2472820 2473323 D identified by similarity to SP:P09453; match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase 2472820..2473323 Methylococcus capsulatus str. Bath 3102239 YP_114695.1 CDS MCA2278 NC_002977.6 2473304 2474701 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(2473304..2474701) Methylococcus capsulatus str. Bath 3102238 YP_114696.1 CDS cpxR NC_002977.6 2474688 2475404 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(2474688..2475404) Methylococcus capsulatus str. Bath 3103184 YP_114697.1 CDS MCA2280 NC_002977.6 2475594 2475977 R hypothetical protein complement(2475594..2475977) Methylococcus capsulatus str. Bath 3103183 YP_114698.1 CDS MCA2281 NC_002977.6 2477322 2478143 R identified by similarity to GP:17131803; match to protein family HMM PF00310; hypothetical protein complement(2477322..2478143) Methylococcus capsulatus str. Bath 3104311 YP_114699.1 CDS MCA2282 NC_002977.6 2478287 2478901 R hypothetical protein complement(2478287..2478901) Methylococcus capsulatus str. Bath 3102460 YP_114700.1 CDS MCA2283 NC_002977.6 2478932 2480344 D identified by similarity to GP:12620739; hypothetical protein 2478932..2480344 Methylococcus capsulatus str. Bath 3102459 YP_114701.1 CDS MCA2284 NC_002977.6 2480363 2480929 R identified by similarity to SP:P36653; match to protein family HMM PF05728; hydrolase complement(2480363..2480929) Methylococcus capsulatus str. Bath 3104898 YP_114702.1 CDS MCA2285 NC_002977.6 2481023 2482051 D hypothetical protein 2481023..2482051 Methylococcus capsulatus str. Bath 3104897 YP_114703.1 CDS MCA2286 NC_002977.6 2482039 2482638 R hypothetical protein complement(2482039..2482638) Methylococcus capsulatus str. Bath 3103322 YP_114704.1 CDS cobD NC_002977.6 2482686 2483627 D CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 2482686..2483627 Methylococcus capsulatus str. Bath 3103321 YP_114705.1 CDS MCA2288 NC_002977.6 2483620 2484606 D cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 2483620..2484606 Methylococcus capsulatus str. Bath 3104603 YP_114706.1 CDS MCA2289 NC_002977.6 2484616 2485281 R identified by similarity to GP:17431084; match to protein family HMM PF00881; nitroreductase complement(2484616..2485281) Methylococcus capsulatus str. Bath 3104602 YP_114707.1 CDS cobB NC_002977.6 2485278 2486567 R responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase complement(2485278..2486567) Methylococcus capsulatus str. Bath 3104926 YP_114708.1 CDS cobA NC_002977.6 2486564 2487166 R catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase complement(2486564..2487166) Methylococcus capsulatus str. Bath 3103117 YP_114709.1 CDS MCA2292 NC_002977.6 2487153 2487476 R identified by similarity to GP:17427338; hypothetical protein complement(2487153..2487476) Methylococcus capsulatus str. Bath 3103116 YP_114710.1 CDS MCA2293 NC_002977.6 2487502 2488878 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466; precorrin-3B C(17)-methyltransferase complement(2487502..2488878) Methylococcus capsulatus str. Bath 3104763 YP_114711.1 CDS MCA2295 NC_002977.6 2489997 2490830 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR01467; precorrin-2 C(20)-methyltransferase complement(2489997..2490830) Methylococcus capsulatus str. Bath 3102306 YP_114712.1 CDS cobL NC_002977.6 2490911 2492194 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR01468; precorrin-6Y C5,15-methyltransferase complement(2490911..2492194) Methylococcus capsulatus str. Bath 3104368 YP_114713.1 CDS cbiD NC_002977.6 2492228 2493373 R Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase complement(2492228..2493373) Methylococcus capsulatus str. Bath 3104632 YP_114714.1 CDS cobH NC_002977.6 2493381 2494040 R identified by similarity to SP:P21638; match to protein family HMM PF02570; precorrin-8X methylmutase complement(2493381..2494040) Methylococcus capsulatus str. Bath 3104631 YP_114715.1 CDS MCA2299 NC_002977.6 2494037 2494888 R identified by match to protein family HMM PF01903; CbiX protein complement(2494037..2494888) Methylococcus capsulatus str. Bath 3103077 YP_114716.1 CDS cobM NC_002977.6 2494885 2495706 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465; precorrin-4 C(11)-methyltransferase complement(2494885..2495706) Methylococcus capsulatus str. Bath 3103076 YP_114717.1 CDS MCA2301 NC_002977.6 2495703 2496248 R hypothetical protein complement(2495703..2496248) Methylococcus capsulatus str. Bath 3103558 YP_114718.1 CDS MCA2302 NC_002977.6 2496389 2496658 R hypothetical protein complement(2496389..2496658) Methylococcus capsulatus str. Bath 3103557 YP_114719.1 CDS MCA2303 NC_002977.6 2496998 2498011 D identified by similarity to GP:609231; match to protein family HMM PF00288; hypothetical protein 2496998..2498011 Methylococcus capsulatus str. Bath 3103391 YP_114720.1 CDS cobQ NC_002977.6 2498013 2499530 D catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 2498013..2499530 Methylococcus capsulatus str. Bath 3103390 YP_114721.1 CDS MCA2305 NC_002977.6 2499813 2501198 D identified by match to protein family HMM PF00753; match to protein family HMM PF07521; metallo-beta-lactamase 2499813..2501198 Methylococcus capsulatus str. Bath 3104454 YP_114722.1 CDS MCA2306 NC_002977.6 2501360 2502370 R tRNA nucleotidyltransferase/poly(A) polymerase complement(2501360..2502370) Methylococcus capsulatus str. Bath 3104453 YP_114723.1 CDS MCA2307 NC_002977.6 2502432 2503382 D identified by similarity to SP:P04194; match to protein family HMM PF02329; histidine decarboxylase, pyruvoyl type 2502432..2503382 Methylococcus capsulatus str. Bath 3103671 YP_114724.1 CDS MCA2308 NC_002977.6 2503426 2503704 D identified by similarity to GP:18161035; hypothetical protein 2503426..2503704 Methylococcus capsulatus str. Bath 3103670 YP_114725.1 CDS MCA2309 NC_002977.6 2503879 2504295 R hypothetical protein complement(2503879..2504295) Methylococcus capsulatus str. Bath 3105072 YP_114726.1 CDS MCA2310 NC_002977.6 2504328 2504681 D identified by similarity to GP:11862900; hypothetical protein 2504328..2504681 Methylococcus capsulatus str. Bath 3105071 YP_114727.1 CDS MCA2311 NC_002977.6 2504817 2505683 R identified by match to protein family HMM TIGR00740; methyltransferase complement(2504817..2505683) Methylococcus capsulatus str. Bath 3104772 YP_114728.1 CDS pcnB NC_002977.6 2505619 2506935 D identified by similarity to SP:P13685; match to protein family HMM PF01743; match to protein family HMM TIGR01942; poly(A) polymerase 2505619..2506935 Methylococcus capsulatus str. Bath 3104771 YP_114729.1 CDS folK-1 NC_002977.6 2507044 2507541 D identified by similarity to SP:P26281; match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 2507044..2507541 Methylococcus capsulatus str. Bath 3103010 YP_114730.1 CDS panB NC_002977.6 2507534 2508343 D identified by similarity to SP:P31057; match to protein family HMM PF02548; match to protein family HMM TIGR00222; 3-methyl-2-oxobutanoate hydroxymethyltransferase 2507534..2508343 Methylococcus capsulatus str. Bath 3103009 YP_114731.1 CDS panC NC_002977.6 2508340 2509200 D identified by similarity to SP:P31663; match to protein family HMM PF02569; match to protein family HMM TIGR00018; pantoate--beta-alanine ligase 2508340..2509200 Methylococcus capsulatus str. Bath 3102980 YP_114732.1 CDS panD NC_002977.6 2509301 2509681 D Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 2509301..2509681 Methylococcus capsulatus str. Bath 3102979 YP_114733.1 CDS folP NC_002977.6 2509686 2510570 R identified by similarity to SP:P28822; match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase complement(2509686..2510570) Methylococcus capsulatus str. Bath 3102454 YP_114734.1 CDS MCA2318 NC_002977.6 2510622 2511428 R identified by similarity to GP:17429239; match to protein family HMM PF02649; match to protein family HMM TIGR00294; hypothetical protein complement(2510622..2511428) Methylococcus capsulatus str. Bath 3102453 YP_114735.1 CDS MCA2319 NC_002977.6 2511486 2513204 R identified by similarity to GP:13559971; formylmethanofurane dehydrogenase subunit complement(2511486..2513204) Methylococcus capsulatus str. Bath 3104159 YP_114736.1 CDS MCA2320 NC_002977.6 2513220 2513906 R identified by similarity to OMNI:NTL03PA05535; hypothetical protein complement(2513220..2513906) Methylococcus capsulatus str. Bath 3104947 YP_114737.1 CDS MCA2321 NC_002977.6 2513922 2516051 R identified by similarity to OMNI:CC0214; match to protein family HMM PF00593; TonB-dependent receptor complement(2513922..2516051) Methylococcus capsulatus str. Bath 3104991 YP_114738.1 CDS MCA2322 NC_002977.6 2516270 2517292 R transctiptional regulator complement(2516270..2517292) Methylococcus capsulatus str. Bath 3104990 YP_114739.1 CDS MCA2323 NC_002977.6 2517318 2517800 D hypothetical protein 2517318..2517800 Methylococcus capsulatus str. Bath 3104246 YP_114740.1 CDS MCA2324 NC_002977.6 2517856 2520954 R identified by match to protein family HMM TIGR00914; CzcA family heavy metal efflux protein complement(2517856..2520954) Methylococcus capsulatus str. Bath 3104245 YP_114741.1 CDS MCA2325 NC_002977.6 2520954 2522123 R identified by similarity to GP:8388788; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit complement(2520954..2522123) Methylococcus capsulatus str. Bath 3104804 YP_114742.1 CDS MCA2326 NC_002977.6 2522120 2522488 R hypothetical protein complement(2522120..2522488) Methylococcus capsulatus str. Bath 3104803 YP_114743.1 CDS MCA2327 NC_002977.6 2522734 2523279 R identified by similarity to OMNI:SP0830; hypothetical protein complement(2522734..2523279) Methylococcus capsulatus str. Bath 3103636 YP_114744.1 CDS MCA2328 NC_002977.6 2523434 2523793 D hypothetical protein 2523434..2523793 Methylococcus capsulatus str. Bath 3104484 YP_114745.1 CDS MCA2329 NC_002977.6 2523781 2524788 R identified by match to protein family HMM PF02321; outer membrane efflux family protein complement(2523781..2524788) Methylococcus capsulatus str. Bath 3103536 YP_114746.1 CDS MCA2330 NC_002977.6 2525010 2525696 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 2525010..2525696 Methylococcus capsulatus str. Bath 3102420 YP_114747.1 CDS MCA2331 NC_002977.6 2525693 2527093 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 2525693..2527093 Methylococcus capsulatus str. Bath 3102419 YP_114748.1 CDS MCA2332 NC_002977.6 2527230 2528525 R identified by match to protein family HMM PF01979; match to protein family HMM TIGR00857; dihydroorotase complement(2527230..2528525) Methylococcus capsulatus str. Bath 3103305 YP_114749.1 CDS pyrB NC_002977.6 2528522 2529508 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase complement(2528522..2529508) Methylococcus capsulatus str. Bath 3102801 YP_114750.1 CDS MCA2334 NC_002977.6 2529505 2530017 R regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase complement(2529505..2530017) Methylococcus capsulatus str. Bath 3102800 YP_114751.1 CDS MCA2335 NC_002977.6 2530021 2530476 R identified by similarity to GP:10442817; match to protein family HMM PF03652; match to protein family HMM TIGR00250; hypothetical protein complement(2530021..2530476) Methylococcus capsulatus str. Bath 3102527 YP_114752.1 CDS MCA2336 NC_002977.6 2530469 2531035 R identified by similarity to GP:17427686; match to protein family HMM PF02622; hypothetical protein complement(2530469..2531035) Methylococcus capsulatus str. Bath 3102526 YP_114753.1 CDS MCA2337 NC_002977.6 2531081 2531920 R identified by similarity to GP:17429800; match to protein family HMM TIGR01352; TonB-dependent receptor complement(2531081..2531920) Methylococcus capsulatus str. Bath 3103446 YP_114754.1 CDS gshB NC_002977.6 2531910 2532878 R catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase complement(2531910..2532878) Methylococcus capsulatus str. Bath 3103445 YP_114755.1 CDS rpmB NC_002977.6 2532982 2533218 D identified by similarity to SP:P02428; match to protein family HMM PF00830; match to protein family HMM TIGR00009; 50S ribosomal protein L28 2532982..2533218 Methylococcus capsulatus str. Bath 3104614 YP_114756.1 CDS rpmG NC_002977.6 2533236 2533391 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 2533236..2533391 Methylococcus capsulatus str. Bath 3102053 YP_114757.1 CDS MCA2341 NC_002977.6 2533556 2534179 D identified by similarity to GP:1688245; match to protein family HMM PF01656; ParA family protein 2533556..2534179 Methylococcus capsulatus str. Bath 3102608 YP_114758.1 CDS MCA2342 NC_002977.6 2534184 2534531 D hypothetical protein 2534184..2534531 Methylococcus capsulatus str. Bath 3102607 YP_114759.1 CDS htrA NC_002977.6 2534666 2536063 D identified by similarity to SP:P09376; match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; protease Do 2534666..2536063 Methylococcus capsulatus str. Bath 3105048 YP_114760.1 CDS ilvE NC_002977.6 2536132 2537052 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(2536132..2537052) Methylococcus capsulatus str. Bath 3105047 YP_114761.1 CDS glnE NC_002977.6 2537102 2539948 R identified by similarity to SP:P30870; match to protein family HMM PF03710; glutamate-ammonia-ligase adenylyltransferase complement(2537102..2539948) Methylococcus capsulatus str. Bath 3104746 YP_114762.1 CDS rplQ NC_002977.6 2540081 2540440 R identified by similarity to SP:P02416; match to protein family HMM PF01196; match to protein family HMM TIGR00059; 50S ribosomal protein L17 complement(2540081..2540440) Methylococcus capsulatus str. Bath 3104745 YP_114763.1 CDS rpoA NC_002977.6 2540462 2541448 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(2540462..2541448) Methylococcus capsulatus str. Bath 3103602 YP_114764.1 CDS rpsD NC_002977.6 2541472 2542092 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(2541472..2542092) Methylococcus capsulatus str. Bath 3103674 YP_114765.1 CDS rpsK NC_002977.6 2542106 2542492 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(2542106..2542492) Methylococcus capsulatus str. Bath 3103673 YP_114766.1 CDS rpsM NC_002977.6 2542508 2542864 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(2542508..2542864) Methylococcus capsulatus str. Bath 3102992 YP_114767.1 CDS rpmJ NC_002977.6 2542947 2543060 R identified by similarity to SP:P21194; match to protein family HMM PF00444; match to protein family HMM TIGR01022; 50S ribosomal protein L36 complement(2542947..2543060) Methylococcus capsulatus str. Bath 3103438 YP_114768.1 CDS secY NC_002977.6 2543088 2544413 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(2543088..2544413) Methylococcus capsulatus str. Bath 3102991 YP_114769.1 CDS rplO NC_002977.6 2544413 2544847 R identified by similarity to SP:P02413; match to protein family HMM PF01305; match to protein family HMM TIGR01071; 50S ribosomal protein L15 complement(2544413..2544847) Methylococcus capsulatus str. Bath 3103526 YP_114770.1 CDS rpmD NC_002977.6 2544849 2545034 R identified by similarity to SP:P02430; match to protein family HMM PF00327; match to protein family HMM TIGR01308; 50S ribosomal protein L30 complement(2544849..2545034) Methylococcus capsulatus str. Bath 3103525 YP_114771.1 CDS rpsE NC_002977.6 2545040 2545549 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(2545040..2545549) Methylococcus capsulatus str. Bath 3102700 YP_114772.1 CDS rplR NC_002977.6 2545562 2545915 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(2545562..2545915) Methylococcus capsulatus str. Bath 3102699 YP_114773.1 CDS rplF NC_002977.6 2545926 2546459 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(2545926..2546459) Methylococcus capsulatus str. Bath 3102954 YP_114774.1 CDS rpsH NC_002977.6 2546481 2546876 R identified by similarity to SP:P02361; match to protein family HMM PF00410; 30S ribosomal protein S8 complement(2546481..2546876) Methylococcus capsulatus str. Bath 3104661 YP_114775.1 CDS rpsN NC_002977.6 2546908 2547213 R identified by similarity to SP:P02370; match to protein family HMM PF00253; 30S ribosomal protein S14 complement(2546908..2547213) Methylococcus capsulatus str. Bath 3104320 YP_114776.1 CDS rplE NC_002977.6 2547227 2547766 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(2547227..2547766) Methylococcus capsulatus str. Bath 3104319 YP_114777.1 CDS rplX NC_002977.6 2547781 2548098 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(2547781..2548098) Methylococcus capsulatus str. Bath 3104165 YP_114778.1 CDS rplN NC_002977.6 2548126 2548494 R identified by similarity to SP:P02411; match to protein family HMM PF00238; match to protein family HMM TIGR01067; 50S ribosomal protein L14 complement(2548126..2548494) Methylococcus capsulatus str. Bath 3104164 YP_114779.1 CDS rpsQ NC_002977.6 2548539 2548799 R identified by similarity to SP:P02373; match to protein family HMM PF00366; 30S ribosomal protein S17 complement(2548539..2548799) Methylococcus capsulatus str. Bath 3105020 YP_114780.1 CDS rpmC NC_002977.6 2548796 2548993 R identified by similarity to SP:P02429; match to protein family HMM PF00831; match to protein family HMM TIGR00012; 50S ribosomal protein L29 complement(2548796..2548993) Methylococcus capsulatus str. Bath 3105019 YP_114781.1 CDS rplP NC_002977.6 2548990 2549403 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(2548990..2549403) Methylococcus capsulatus str. Bath 3103260 YP_114782.1 CDS rpsC NC_002977.6 2549416 2550087 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(2549416..2550087) Methylococcus capsulatus str. Bath 3103259 YP_114783.1 CDS rplV NC_002977.6 2550111 2550443 R identified by similarity to SP:P02423; match to protein family HMM PF00237; match to protein family HMM TIGR01044; 50S ribosomal protein L22 complement(2550111..2550443) Methylococcus capsulatus str. Bath 3102770 YP_114784.1 CDS rpsS NC_002977.6 2550457 2550729 R identified by similarity to SP:P02375; match to protein family HMM PF00203; match to protein family HMM TIGR01050; 30S ribosomal protein S19 complement(2550457..2550729) Methylococcus capsulatus str. Bath 3103047 YP_114785.2 CDS rplB NC_002977.6 2550749 2551576 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(2550749..2551576) Methylococcus capsulatus str. Bath 3103046 YP_114786.1 CDS rplW NC_002977.6 2551611 2551904 R identified by similarity to SP:P02424; match to protein family HMM PF00276; 50S ribosomal protein L23 complement(2551611..2551904) Methylococcus capsulatus str. Bath 3102407 YP_114787.1 CDS rplD NC_002977.6 2551901 2552518 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(2551901..2552518) Methylococcus capsulatus str. Bath 3103535 YP_114788.1 CDS rplC NC_002977.6 2552529 2553164 R identified by similarity to SP:P02386; match to protein family HMM PF00297; 50S ribosomal protein L3 complement(2552529..2553164) Methylococcus capsulatus str. Bath 3104868 YP_114789.1 CDS rpsJ NC_002977.6 2553202 2553513 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(2553202..2553513) Methylococcus capsulatus str. Bath 3104867 YP_114790.1 CDS tuf-2 NC_002977.6 2553518 2554708 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(2553518..2554708) Methylococcus capsulatus str. Bath 3102512 YP_114791.1 CDS fusA-2 NC_002977.6 2554750 2556846 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(2554750..2556846) Methylococcus capsulatus str. Bath 3102511 YP_114792.1 CDS rpsG NC_002977.6 2556889 2557359 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(2556889..2557359) Methylococcus capsulatus str. Bath 3104769 YP_114793.1 CDS rpsL NC_002977.6 2557378 2557752 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(2557378..2557752) Methylococcus capsulatus str. Bath 3102658 YP_114794.1 CDS rnd NC_002977.6 2558241 2559407 D identified by similarity to SP:P09155; match to protein family HMM PF00570; match to protein family HMM PF01612; match to protein family HMM TIGR01388; ribonuclease D 2558241..2559407 Methylococcus capsulatus str. Bath 3102657 YP_114795.1 CDS MCA2379 NC_002977.6 2559400 2560929 D identified by similarity to GP:9950959; hypothetical protein 2559400..2560929 Methylococcus capsulatus str. Bath 3103514 YP_114796.1 CDS MCA2380 NC_002977.6 2560936 2561688 R identified by similarity to GP:19915811; match to protein family HMM TIGR02276; hypothetical protein complement(2560936..2561688) Methylococcus capsulatus str. Bath 3103513 YP_114797.1 CDS MCA2381 NC_002977.6 2561918 2562445 R identified by similarity to GP:773184; MxaD gene product complement(2561918..2562445) Methylococcus capsulatus str. Bath 3103090 YP_114798.1 CDS sbcB NC_002977.6 2562510 2563946 R Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I complement(2562510..2563946) Methylococcus capsulatus str. Bath 3103089 YP_114799.1 CDS MCA2383 NC_002977.6 2563963 2564142 R identified by similarity to OMNI:VC2288; hypothetical protein complement(2563963..2564142) Methylococcus capsulatus str. Bath 3102346 YP_114800.1 CDS MCA2384 NC_002977.6 2564261 2565484 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F complement(2564261..2565484) Methylococcus capsulatus str. Bath 3102345 YP_114801.1 CDS MCA2385 NC_002977.6 2565501 2566109 R Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E complement(2565501..2566109) Methylococcus capsulatus str. Bath 3103247 YP_114802.1 CDS MCA2386 NC_002977.6 2566109 2566768 R Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D complement(2566109..2566768) Methylococcus capsulatus str. Bath 3104850 YP_114803.1 CDS MCA2387 NC_002977.6 2566774 2567607 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C complement(2566774..2567607) Methylococcus capsulatus str. Bath 3104849 YP_114804.1 CDS MCA2388 NC_002977.6 2567687 2568889 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B complement(2567687..2568889) Methylococcus capsulatus str. Bath 3102163 YP_114805.1 CDS MCA2389 NC_002977.6 2568895 2570253 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A complement(2568895..2570253) Methylococcus capsulatus str. Bath 3102162 YP_114806.1 CDS MCA2390 NC_002977.6 2571338 2572075 D identified by match to protein family HMM PF01790; prolipoprotein diacylglyceryl transferase 2571338..2572075 Methylococcus capsulatus str. Bath 3105074 YP_114807.1 CDS MCA2391 NC_002977.6 2572072 2573439 D identified by match to protein family HMM PF04055; MoaA/NifB/PqqE family protein 2572072..2573439 Methylococcus capsulatus str. Bath 3102869 YP_114808.1 CDS MCA2393 NC_002977.6 2574428 2574853 R hypothetical protein complement(2574428..2574853) Methylococcus capsulatus str. Bath 3102868 YP_114809.1 CDS ccp NC_002977.6 2575025 2575501 R identified by similarity to GP:5070630; cytochrome c' complement(2575025..2575501) Methylococcus capsulatus str. Bath 3102874 YP_114810.1 CDS MCA2395 NC_002977.6 2575717 2576346 R identified by similarity to SP:P43302; match to protein family HMM PF00034; cytochrome c family protein complement(2575717..2576346) Methylococcus capsulatus str. Bath 3102873 YP_114811.1 CDS MCA2396 NC_002977.6 2576349 2577962 R identified by similarity to GP:4001615; match to protein family HMM PF00115; cytochrome c oxidase subunit I complement(2576349..2577962) Methylococcus capsulatus str. Bath 3104555 YP_114812.1 CDS MCA2397 NC_002977.6 2577959 2578492 R identified by similarity to SP:P98052; cytochrome c oxidase subunit II complement(2577959..2578492) Methylococcus capsulatus str. Bath 3104554 YP_114813.1 CDS MCA2398 NC_002977.6 2578470 2578643 R hypothetical protein complement(2578470..2578643) Methylococcus capsulatus str. Bath 3104206 YP_114814.1 CDS MCA2399 NC_002977.6 2578640 2578789 R identified by similarity to GP:2182019; cytochrome c oxidase, CbaD subunit complement(2578640..2578789) Methylococcus capsulatus str. Bath 3104205 YP_114815.1 CDS MCA2400 NC_002977.6 2578847 2580292 R identified by similarity to SP:P98008; nitric-oxide reductase subunit B complement(2578847..2580292) Methylococcus capsulatus str. Bath 3102243 YP_114816.1 CDS MCA2401 NC_002977.6 2580295 2580897 R identified by similarity to OMNI:NTL01ATA0505; hypothetical protein complement(2580295..2580897) Methylococcus capsulatus str. Bath 3102242 YP_114817.1 CDS MCA2402 NC_002977.6 2581281 2582630 R identified by match to protein family HMM PF00571; match to protein family HMM PF04982; hypothetical protein complement(2581281..2582630) Methylococcus capsulatus str. Bath 3104432 YP_114818.1 CDS MCA2403 NC_002977.6 2582627 2583913 R identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476; membrane-bound lytic murein transglycosylase complement(2582627..2583913) Methylococcus capsulatus str. Bath 3104431 YP_114819.1 CDS MCA2405 NC_002977.6 2584116 2584433 D identified by similarity to SP:P95339; match to protein family HMM PF00034; cytochrome c family protein 2584116..2584433 Methylococcus capsulatus str. Bath 3104142 YP_114820.1 CDS MCA2406 NC_002977.6 2584699 2585295 R hypothetical protein complement(2584699..2585295) Methylococcus capsulatus str. Bath 3104141 YP_114821.1 CDS MCA2407 NC_002977.6 2585344 2585730 R identified by similarity to OMNI:NTL03PA00380; match to protein family HMM PF04241; hypothetical protein complement(2585344..2585730) Methylococcus capsulatus str. Bath 3104318 YP_114822.1 CDS MCA2408 NC_002977.6 2585844 2586326 D identified by similarity to GP:4100188; hypothetical protein 2585844..2586326 Methylococcus capsulatus str. Bath 3104317 YP_114823.1 CDS MCA2409 NC_002977.6 2586323 2586604 D hypothetical protein 2586323..2586604 Methylococcus capsulatus str. Bath 3103306 YP_114824.1 CDS MCA2410 NC_002977.6 2586591 2588042 D hypothetical protein 2586591..2588042 Methylococcus capsulatus str. Bath 3104613 YP_114825.1 CDS MCA2411 NC_002977.6 2588050 2588982 D identified by similarity to SP:P41780; match to protein family HMM PF02424; thiamine biosynthesis lipoprotein ApbE 2588050..2588982 Methylococcus capsulatus str. Bath 3102104 YP_114826.1 CDS MCA2412 NC_002977.6 2589018 2589803 D identified by match to protein family HMM PF00310; glutamine amidotransferase 2589018..2589803 Methylococcus capsulatus str. Bath 3103462 YP_114827.1 CDS MCA2413 NC_002977.6 2589800 2590639 D hypothetical protein 2589800..2590639 Methylococcus capsulatus str. Bath 3102103 YP_114828.1 CDS MCA2414 NC_002977.6 2590636 2591718 D identified by match to protein family HMM PF00534; glycosyl transferase family protein 2590636..2591718 Methylococcus capsulatus str. Bath 3103461 YP_114829.1 CDS MCA2415 NC_002977.6 2591726 2592850 R identified by match to protein family HMM PF00534; glycosyl transferase family protein complement(2591726..2592850) Methylococcus capsulatus str. Bath 3104122 YP_114830.1 CDS MCA2416 NC_002977.6 2592871 2593488 R identified by similarity to GP:8246788; match to protein family HMM PF01169; hypothetical protein complement(2592871..2593488) Methylococcus capsulatus str. Bath 3104121 YP_114831.1 CDS MCA2417 NC_002977.6 2593541 2594380 R identified by similarity to OMNI:NTL03PA04468; match to protein family HMM PF02535; ZIP zinc transporter family protein complement(2593541..2594380) Methylococcus capsulatus str. Bath 3102054 YP_114832.1 CDS surE NC_002977.6 2594631 2595386 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 2594631..2595386 Methylococcus capsulatus str. Bath 3103601 YP_114833.1 CDS pcm-2 NC_002977.6 2595383 2596042 D identified by similarity to SP:P24206; match to protein family HMM PF01135; match to protein family HMM TIGR00080; protein-L-isoaspartate O-methyltransferase 2595383..2596042 Methylococcus capsulatus str. Bath 3104834 YP_114834.1 CDS MCA2420 NC_002977.6 2596047 2598725 D identified by similarity to GP:14026256; match to protein family HMM PF00583; match to protein family HMM PF02629; acetyltransferase 2596047..2598725 Methylococcus capsulatus str. Bath 3104833 YP_114835.1 CDS MCA2421 NC_002977.6 2598730 2599209 D identified by similarity to GP:29540766; hypothetical protein 2598730..2599209 Methylococcus capsulatus str. Bath 3102097 YP_114836.1 CDS lpxC NC_002977.6 2599214 2600128 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(2599214..2600128) Methylococcus capsulatus str. Bath 3102096 YP_114837.1 CDS ftsZ NC_002977.6 2600264 2601412 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(2600264..2601412) Methylococcus capsulatus str. Bath 3103572 YP_114838.1 CDS ftsA NC_002977.6 2601459 2602694 R identified by similarity to SP:P06137; match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA complement(2601459..2602694) Methylococcus capsulatus str. Bath 3103571 YP_114839.1 CDS MCA2425 NC_002977.6 2602827 2603648 R identified by similarity to SP:P06136; match to protein family HMM PF03799; cell division protein FtsQ complement(2602827..2603648) Methylococcus capsulatus str. Bath 3102953 YP_114840.1 CDS ddl NC_002977.6 2603618 2604547 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase complement(2603618..2604547) Methylococcus capsulatus str. Bath 3102563 YP_114841.1 CDS murB NC_002977.6 2604570 2605484 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(2604570..2605484) Methylococcus capsulatus str. Bath 3102562 YP_114842.1 CDS murC NC_002977.6 2605481 2606899 R identified by similarity to SP:P17952; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01082; UDP-N-acetylmuramate--L-alanine ligase complement(2605481..2606899) Methylococcus capsulatus str. Bath 3105034 YP_114843.1 CDS murG NC_002977.6 2606896 2607960 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase complement(2606896..2607960) Methylococcus capsulatus str. Bath 3105033 YP_114844.1 CDS ftsW NC_002977.6 2607945 2609141 R identified by similarity to SP:P16457; match to protein family HMM PF01098; cell division protein FtsW complement(2607945..2609141) Methylococcus capsulatus str. Bath 3104662 YP_114845.1 CDS murD NC_002977.6 2609138 2610517 R identified by similarity to SP:P14900; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01087; UDP-N-acetylmuramoylalanine--D-glutamate ligase complement(2609138..2610517) Methylococcus capsulatus str. Bath 3102458 YP_114846.1 CDS mraY NC_002977.6 2610523 2611605 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(2610523..2611605) Methylococcus capsulatus str. Bath 3102457 YP_114847.1 CDS murE NC_002977.6 2611656 2613095 R identified by similarity to GP:12007716; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01085; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(2611656..2613095) Methylococcus capsulatus str. Bath 3104896 YP_114848.1 CDS ftsI NC_002977.6 2613158 2614885 R identified by similarity to SP:P04286; match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 3 complement(2613158..2614885) Methylococcus capsulatus str. Bath 3104895 YP_114849.1 CDS MCA2435 NC_002977.6 2614915 2615172 R identified by similarity to SP:P22187; match to protein family HMM PF04999; match to protein family HMM TIGR02209; cell division protein FtsL complement(2614915..2615172) Methylococcus capsulatus str. Bath 3103763 YP_114850.1 CDS MCA2436 NC_002977.6 2615169 2616074 R identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW complement(2615169..2616074) Methylococcus capsulatus str. Bath 3103762 YP_114851.1 CDS mraZ NC_002977.6 2616104 2616562 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(2616104..2616562) Methylococcus capsulatus str. Bath 3102771 YP_114852.1 CDS ligA NC_002977.6 2616921 2618942 R identified by similarity to SP:P15042; match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575; NAD-dependent DNA ligase complement(2616921..2618942) Methylococcus capsulatus str. Bath 3104066 YP_114853.1 CDS MCA2439 NC_002977.6 2618939 2619607 R identified by similarity to SP:P77173; match to protein family HMM PF04354; cell division protein ZipA complement(2618939..2619607) Methylococcus capsulatus str. Bath 3104598 YP_114854.1 CDS smc NC_002977.6 2619664 2622993 R identified by similarity to SP:P51834; match to protein family HMM PF02463; match to protein family HMM PF02483; match to protein family HMM PF06470; match to protein family HMM TIGR02168; chromosome segregation protein SMC complement(2619664..2622993) Methylococcus capsulatus str. Bath 3104597 YP_114855.1 CDS MCA2441 NC_002977.6 2623315 2623704 D NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 2623315..2623704 Methylococcus capsulatus str. Bath 3103314 YP_114856.1 CDS MCA2442 NC_002977.6 2623708 2624343 R identified by similarity to OMNI:NTL01BH0617; match to protein family HMM PF03473; MOSC domain-containing protein complement(2623708..2624343) Methylococcus capsulatus str. Bath 3103313 YP_114857.1 CDS rnhB NC_002977.6 2624340 2624921 R identified by similarity to SP:P10442; match to protein family HMM PF01351; ribonuclease HII complement(2624340..2624921) Methylococcus capsulatus str. Bath 3104924 YP_114858.1 CDS lpxA-2 NC_002977.6 2624940 2625734 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(2624940..2625734) Methylococcus capsulatus str. Bath 3104923 YP_114859.1 CDS fabZ NC_002977.6 2625707 2626147 R identified by similarity to SP:P21774; match to protein family HMM PF03061; match to protein family HMM TIGR01750; (3R)-hydroxymyristoyl-ACP dehydratase complement(2625707..2626147) Methylococcus capsulatus str. Bath 3104409 YP_114860.1 CDS MCA2446 NC_002977.6 2626198 2626704 R identified by similarity to SP:P31519; match to protein family HMM PF03938; outer membrane protein OmpH complement(2626198..2626704) Methylococcus capsulatus str. Bath 3102140 YP_114861.1 CDS MCA2447 NC_002977.6 2626863 2629253 R identified by match to protein family HMM PF01103; match to protein family HMM PF07244; OMP85 family outer membrane protein complement(2626863..2629253) Methylococcus capsulatus str. Bath 3102139 YP_114862.1 CDS phoU2 NC_002977.6 2629250 2629978 R identified by similarity to SP:P07656; match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system protein PhoU complement(2629250..2629978) Methylococcus capsulatus str. Bath 3104651 YP_114863.1 CDS MCA2449 NC_002977.6 2630263 2631273 D identified by similarity to SP:P39858; match to protein family HMM PF01370; capsular polysaccharide biosynthesis protein I 2630263..2631273 Methylococcus capsulatus str. Bath 3102406 YP_114864.1 CDS mobB NC_002977.6 2631278 2631829 D identified by similarity to SP:P32125; match to protein family HMM PF03205; match to protein family HMM TIGR00176; molybdopterin-guanine dinucleotide biosynthesis protein MobB 2631278..2631829 Methylococcus capsulatus str. Bath 3103662 YP_114865.1 CDS galE-2 NC_002977.6 2631826 2632851 D identified by similarity to SP:Q59083; match to protein family HMM PF01370; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase 2631826..2632851 Methylococcus capsulatus str. Bath 3103661 YP_114866.1 CDS MCA2452 NC_002977.6 2632964 2633371 R hypothetical protein complement(2632964..2633371) Methylococcus capsulatus str. Bath 3104067 YP_114867.1 CDS MCA2453 NC_002977.6 2633407 2633976 R hypothetical protein complement(2633407..2633976) Methylococcus capsulatus str. Bath 3103444 YP_114868.1 CDS MCA2454 NC_002977.6 2633973 2634473 R identified by similarity to OMNI:NT01MC3442; match to protein family HMM PF01928; hypothetical protein complement(2633973..2634473) Methylococcus capsulatus str. Bath 3103443 YP_114869.1 CDS MCA2455 NC_002977.6 2634477 2634713 R hypothetical protein complement(2634477..2634713) Methylococcus capsulatus str. Bath 3104055 YP_114870.1 CDS MCA2456 NC_002977.6 2634723 2635664 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(2634723..2635664) Methylococcus capsulatus str. Bath 3104054 YP_114871.1 CDS MCA2457 NC_002977.6 2635782 2636240 D identified by similarity to OMNI:NTL01SM01709; hypothetical protein 2635782..2636240 Methylococcus capsulatus str. Bath 3104156 YP_114872.1 CDS sodB-2 NC_002977.6 2636455 2637039 D identified by similarity to SP:P09157; match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase, Fe 2636455..2637039 Methylococcus capsulatus str. Bath 3104155 YP_114873.1 CDS MCA2459 NC_002977.6 2637150 2637845 D identified by similarity to GP:20800465; match to protein family HMM PF00106; csgA protein 2637150..2637845 Methylococcus capsulatus str. Bath 3104689 YP_114874.1 CDS MCA2460 NC_002977.6 2637873 2638295 D hypothetical protein 2637873..2638295 Methylococcus capsulatus str. Bath 3104688 YP_114875.1 CDS MCA2461 NC_002977.6 2638724 2639218 R identified by similarity to GP:16944582; hypothetical protein complement(2638724..2639218) Methylococcus capsulatus str. Bath 3104410 YP_114876.1 CDS MCA2462 NC_002977.6 2639242 2639610 R hypothetical protein complement(2639242..2639610) Methylococcus capsulatus str. Bath 3103497 YP_114877.1 CDS MCA2463 NC_002977.6 2639588 2640295 R hypothetical protein complement(2639588..2640295) Methylococcus capsulatus str. Bath 3103496 YP_114878.1 CDS MCA2465 NC_002977.6 2642600 2643811 D identified by similarity to OMNI:NTL03ST2793; match to protein family HMM PF07690; lysophospholipid transporter LplT 2642600..2643811 Methylococcus capsulatus str. Bath 3104332 YP_114879.1 CDS MCA2466 NC_002977.6 2643843 2644196 D identified by similarity to OMNI:NTL03PA05495; hypothetical protein 2643843..2644196 Methylococcus capsulatus str. Bath 3104331 YP_114880.1 CDS gshA NC_002977.6 2644302 2645831 D identified by similarity to SP:P06980; match to protein family HMM PF04262; match to protein family HMM TIGR01434; glutamate--cysteine ligase 2644302..2645831 Methylococcus capsulatus str. Bath 3102692 YP_114881.1 CDS cysH NC_002977.6 2645860 2646582 D catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 2645860..2646582 Methylococcus capsulatus str. Bath 3102691 YP_114882.1 CDS cysB NC_002977.6 2646592 2647566 R LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB complement(2646592..2647566) Methylococcus capsulatus str. Bath 3104953 YP_114883.1 CDS MCA2470 NC_002977.6 2647654 2647977 R identified by similarity to GP:142304; match to protein family HMM PF00037; ferredoxin, 4Fe-4S complement(2647654..2647977) Methylococcus capsulatus str. Bath 3104931 YP_114884.1 CDS MCA2471 NC_002977.6 2648106 2648909 R identified by similarity to OMNI:TM1415; match to protein family HMM PF00459; inositol monophosphatase complement(2648106..2648909) Methylococcus capsulatus str. Bath 3104930 YP_114885.1 CDS MCA2472 NC_002977.6 2649133 2650830 D identified by match to protein family HMM PF00916; sulfate transporter family protein 2649133..2650830 Methylococcus capsulatus str. Bath 3104130 YP_114886.1 CDS MCA2473 NC_002977.6 2650924 2652405 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 2650924..2652405 Methylococcus capsulatus str. Bath 3104129 YP_114887.1 CDS MCA2474 NC_002977.6 2652395 2653789 D identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent DNA-binding response regulator 2652395..2653789 Methylococcus capsulatus str. Bath 3103524 YP_114888.1 CDS MCA2476 NC_002977.6 2654193 2655260 R Matches only weakly to riboflavin-specific deaminase in the N terminal end of the proteinidentified by match to protein family HMM PF00925; riboflavin-specific deaminase/GTP cyclohydrolase II complement(2654193..2655260) Methylococcus capsulatus str. Bath 3103523 YP_114889.1 CDS MCA2477 NC_002977.6 2655537 2657576 R identified by similarity to SP:P37512; match to protein family HMM PF03190; hypothetical protein complement(2655537..2657576) Methylococcus capsulatus str. Bath 3102528 YP_114890.1 CDS MCA2478 NC_002977.6 2657641 2657856 R hypothetical protein complement(2657641..2657856) Methylococcus capsulatus str. Bath 3105085 YP_114891.1 CDS oadB NC_002977.6 2658269 2659396 R identified by similarity to SP:P13156; match to protein family HMM PF03977; match to protein family HMM TIGR01109; oxaloacetate decarboxylase subunit beta complement(2658269..2659396) Methylococcus capsulatus str. Bath 3105084 YP_114892.1 CDS oadA NC_002977.6 2659410 2661206 R catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase complement(2659410..2661206) Methylococcus capsulatus str. Bath 3103160 YP_114893.1 CDS oadC NC_002977.6 2661230 2661487 R identified by similarity to SP:P13155; match to protein family HMM PF04277; match to protein family HMM TIGR01195; oxaloacetate decarboxylase subunit gamma complement(2661230..2661487) Methylococcus capsulatus str. Bath 3103159 YP_114894.1 CDS MCA2482 NC_002977.6 2661610 2661903 R identified by similarity to GP:18159443; hypothetical protein complement(2661610..2661903) Methylococcus capsulatus str. Bath 3104085 YP_114895.1 CDS ispG NC_002977.6 2662165 2663388 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2662165..2663388 Methylococcus capsulatus str. Bath 3104084 YP_114896.1 CDS MCA2484 NC_002977.6 2663400 2664236 R identified by similarity to OMNI:NTL01NM00778; match to protein family HMM PF04305; hypothetical protein complement(2663400..2664236) Methylococcus capsulatus str. Bath 3105005 YP_114897.1 CDS MCA2485 NC_002977.6 2664233 2666809 R catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase complement(2664233..2666809) Methylococcus capsulatus str. Bath 3104538 YP_114898.1 CDS MCA2486 NC_002977.6 2666947 2667879 D identified by match to protein family HMM PF00850; histone deacetylase/AcuC/AphA family protein 2666947..2667879 Methylococcus capsulatus str. Bath 3104537 YP_114899.1 CDS ugd NC_002977.6 2667901 2669229 R identified by similarity to SP:O54068; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; UDP-glucose 6-dehydrogenase complement(2667901..2669229) Methylococcus capsulatus str. Bath 3104468 YP_114900.1 CDS metZ NC_002977.6 2669262 2670413 R catalyzes the conversion of O-succinylhomoserine into homocysteine; O-succinylhomoserine sulfhydrylase complement(2669262..2670413) Methylococcus capsulatus str. Bath 3104467 YP_114901.1 CDS purF NC_002977.6 2670457 2671965 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(2670457..2671965) Methylococcus capsulatus str. Bath 3102194 YP_114902.1 CDS MCA2490 NC_002977.6 2672002 2672535 R identified by similarity to SP:P08550; match to protein family HMM PF02674; CvpA family protein complement(2672002..2672535) Methylococcus capsulatus str. Bath 3102193 YP_114903.1 CDS MCA2491 NC_002977.6 2672539 2673342 R identified by similarity to OMNI:NTL03PA03110; match to protein family HMM PF05036; hypothetical protein complement(2672539..2673342) Methylococcus capsulatus str. Bath 3102478 YP_114904.1 CDS folC NC_002977.6 2673335 2674630 R identified by similarity to SP:P08192; match to protein family HMM PF02875; match to protein family HMM TIGR01499; bifunctional folylpolyglutamate synthase/dihydrofolate synthase complement(2673335..2674630) Methylococcus capsulatus str. Bath 3104374 YP_114905.1 CDS accD NC_002977.6 2674634 2675608 R identified by similarity to SP:P08193; match to protein family HMM TIGR00515; acetyl-CoA carboxylase, carboxyl transferase subunit beta complement(2674634..2675608) Methylococcus capsulatus str. Bath 3104844 YP_114906.1 CDS trpA NC_002977.6 2675623 2676426 R identified by similarity to SP:Q9PDK3; match to protein family HMM PF00290; match to protein family HMM TIGR00262; tryptophan synthase subunit alpha complement(2675623..2676426) Methylococcus capsulatus str. Bath 3104843 YP_114907.1 CDS trpB NC_002977.6 2676423 2677640 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(2676423..2677640) Methylococcus capsulatus str. Bath 3102171 YP_114908.1 CDS trpF NC_002977.6 2677609 2678277 R identified by similarity to SP:Q59649; match to protein family HMM PF00697; N-(5'-phosphoribosyl)anthranilate isomerase complement(2677609..2678277) Methylococcus capsulatus str. Bath 3102170 YP_114909.1 CDS truA NC_002977.6 2678274 2679089 R identified by similarity to SP:P07649; match to protein family HMM PF01416; match to protein family HMM TIGR00071; tRNA pseudouridine synthase A complement(2678274..2679089) Methylococcus capsulatus str. Bath 3102344 YP_114910.1 CDS MCA2498 NC_002977.6 2679319 2679828 R hypothetical protein complement(2679319..2679828) Methylococcus capsulatus str. Bath 3104676 YP_114911.1 CDS MCA2499 NC_002977.6 2679833 2679991 D hypothetical protein 2679833..2679991 Methylococcus capsulatus str. Bath 3104675 YP_114912.1 CDS MCA2500 NC_002977.6 2680079 2680747 D in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ 2680079..2680747 Methylococcus capsulatus str. Bath 3104424 YP_114913.1 CDS MCA2501 NC_002977.6 2680978 2681607 R hypothetical protein complement(2680978..2681607) Methylococcus capsulatus str. Bath 3104423 YP_114914.1 CDS MCA2502 NC_002977.6 2681682 2681855 R hypothetical protein complement(2681682..2681855) Methylococcus capsulatus str. Bath 3102925 YP_114915.1 CDS MCA2503 NC_002977.6 2681873 2682178 R hypothetical protein complement(2681873..2682178) Methylococcus capsulatus str. Bath 3102924 YP_114916.1 CDS MCA2505 NC_002977.6 2682662 2683000 D hypothetical protein 2682662..2683000 Methylococcus capsulatus str. Bath 3103719 YP_114917.1 CDS MCA2506 NC_002977.6 2683110 2683562 R identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; Rrf2 family protein complement(2683110..2683562) Methylococcus capsulatus str. Bath 3103718 YP_114918.1 CDS MCA2507 NC_002977.6 2683722 2684126 D identified by similarity to SP:P73925; match to protein family HMM PF01152; hypothetical protein 2683722..2684126 Methylococcus capsulatus str. Bath 3103685 YP_114919.1 CDS MCA2508 NC_002977.6 2684153 2685127 D identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; oxygenase 2684153..2685127 Methylococcus capsulatus str. Bath 3103769 YP_114920.2 CDS MCA2509 NC_002977.6 2685105 2686472 R Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation; chloride channel protein complement(2685105..2686472) Methylococcus capsulatus str. Bath 3104036 YP_114921.1 CDS MCA2510 NC_002977.6 2686417 2687145 R lipoprotein complement(2686417..2687145) Methylococcus capsulatus str. Bath 3103907 YP_114922.1 CDS MCA2511 NC_002977.6 2687316 2688416 D identified by match to protein family HMM PF01609; ISMca1, transposase 2687316..2688416 Methylococcus capsulatus str. Bath 3103605 YP_114923.1 CDS MCA2512 NC_002977.6 2688630 2690150 D identified by similarity to GP:7650481; match to protein family HMM PF04185; acid phosphatase 2688630..2690150 Methylococcus capsulatus str. Bath 3103852 YP_114924.1 CDS pyrG NC_002977.6 2690459 2692117 D CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 2690459..2692117 Methylococcus capsulatus str. Bath 3103245 YP_114925.2 CDS kdsA NC_002977.6 2692114 2692965 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 2692114..2692965 Methylococcus capsulatus str. Bath 3104373 YP_114926.1 CDS eno-2 NC_002977.6 2693051 2694334 D identified by similarity to SP:P08324; match to protein family HMM PF00113; match to protein family HMM PF03952; match to protein family HMM TIGR01060; enolase 2693051..2694334 Methylococcus capsulatus str. Bath 3103072 YP_114927.1 CDS MCA2516 NC_002977.6 2694361 2694729 D identified by match to protein family HMM PF04977; septum formation initiator family protein 2694361..2694729 Methylococcus capsulatus str. Bath 3103135 YP_114928.1 CDS ispD NC_002977.6 2694719 2695423 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2694719..2695423 Methylococcus capsulatus str. Bath 3104080 YP_114929.1 CDS ispF NC_002977.6 2695411 2695887 D identified by similarity to SP:P36663; match to protein family HMM PF02542; match to protein family HMM TIGR00151; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 2695411..2695887 Methylococcus capsulatus str. Bath 3102974 YP_114930.1 CDS truD NC_002977.6 2695884 2696948 D catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 2695884..2696948 Methylococcus capsulatus str. Bath 3103594 YP_114931.1 CDS arsC NC_002977.6 2696984 2697334 D identified by similarity to SP:P37311; match to protein family HMM PF03960; match to protein family HMM TIGR00014; arsenate reductase 2696984..2697334 Methylococcus capsulatus str. Bath 3103984 YP_114932.1 CDS wrbA NC_002977.6 2697359 2697976 D identified by similarity to SP:P30849; match to protein family HMM PF00258; Trp repressor-binding protein 2697359..2697976 Methylococcus capsulatus str. Bath 3103917 YP_114933.1 CDS MCA2522 NC_002977.6 2698005 2698703 D identified by similarity to OMNI:NTL03PA00948; DnaA domain-containing protein 2698005..2698703 Methylococcus capsulatus str. Bath 3103713 YP_114934.1 CDS panE NC_002977.6 2698700 2699638 D identified by match to protein family HMM PF02558; match to protein family HMM TIGR00745; 2-dehydropantoate 2-reductase 2698700..2699638 Methylococcus capsulatus str. Bath 3104119 YP_114935.1 CDS MCA2524 NC_002977.6 2699635 2700024 D identified by similarity to OMNI:NTL01SS02345; hypothetical protein 2699635..2700024 Methylococcus capsulatus str. Bath 3103182 YP_114936.1 CDS MCA2525 NC_002977.6 2700355 2701143 R identified by similarity to OMNI:NT01MC3769; hypothetical protein complement(2700355..2701143) Methylococcus capsulatus str. Bath 3103346 YP_114937.1 CDS trpS NC_002977.6 2701155 2702171 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(2701155..2702171) Methylococcus capsulatus str. Bath 3104650 YP_114938.1 CDS MCA2527 NC_002977.6 2702635 2703048 D identified by similarity to SP:Q46903; match to protein family HMM PF01242; 6-pyruvoyl tetrahydrobiopterin synthase 2702635..2703048 Methylococcus capsulatus str. Bath 3104060 YP_114939.1 CDS MCA2528 NC_002977.6 2703045 2703518 D identified by similarity to OMNI:NTL01XF01262; hypothetical protein 2703045..2703518 Methylococcus capsulatus str. Bath 3104059 YP_114940.1 CDS purK NC_002977.6 2703521 2704651 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(2703521..2704651) Methylococcus capsulatus str. Bath 3104952 YP_114941.1 CDS purE NC_002977.6 2704651 2705139 R identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(2704651..2705139) Methylococcus capsulatus str. Bath 3103794 YP_114942.1 CDS hepA NC_002977.6 2705323 2708172 D transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 2705323..2708172 Methylococcus capsulatus str. Bath 3103793 YP_114943.1 CDS MCA2532 NC_002977.6 2708225 2708659 R identified by match to protein family HMM PF00011; HSP20 family protein complement(2708225..2708659) Methylococcus capsulatus str. Bath 3104993 YP_114944.1 CDS MCA2533 NC_002977.6 2708760 2710085 R identified by similarity to OMNI:NTL03PA05135; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxyl-terminal protease complement(2708760..2710085) Methylococcus capsulatus str. Bath 3104992 YP_114945.1 CDS MCA2534 NC_002977.6 2710137 2711282 R identified by match to protein family HMM PF01551; peptidase M23/M37 domain-containing protein complement(2710137..2711282) Methylococcus capsulatus str. Bath 3104922 YP_114946.1 CDS MCA2535 NC_002977.6 2711598 2711900 D identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 2711598..2711900 Methylococcus capsulatus str. Bath 3104921 YP_114947.1 CDS MCA2536 NC_002977.6 2711973 2712410 D identified by match to protein family HMM PF00581; rhodanese domain-containing protein 2711973..2712410 Methylococcus capsulatus str. Bath 3104758 YP_114948.1 CDS secB NC_002977.6 2712448 2712915 D molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 2712448..2712915 Methylococcus capsulatus str. Bath 3104757 YP_114949.1 CDS gpsA NC_002977.6 2712933 2713940 D identified by similarity to SP:P37606; match to protein family HMM PF01210; match to protein family HMM PF07479; glycerol-3-phosphate dehydrogenase 2712933..2713940 Methylococcus capsulatus str. Bath 3105046 YP_114950.1 CDS MCA2539 NC_002977.6 2713937 2714416 R identified by similarity to SP:P33899; match to protein family HMM PF00588; match to protein family HMM TIGR00185; RNA methyltransferase complement(2713937..2714416) Methylococcus capsulatus str. Bath 3105045 YP_114951.1 CDS glgP-2 NC_002977.6 2714424 2716934 R identified by similarity to SP:P11217; match to protein family HMM TIGR02093; glycogen phosphorylase complement(2714424..2716934) Methylococcus capsulatus str. Bath 3104436 YP_114952.1 CDS ntrC NC_002977.6 2717046 2718458 R identified by similarity to SP:P06713; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; match to protein family HMM TIGR01818; nitrogen regulation protein NR(I) complement(2717046..2718458) Methylococcus capsulatus str. Bath 3104435 YP_114953.1 CDS ntrB NC_002977.6 2718424 2719518 R identified by similarity to SP:P06712; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; nitrogen regulation protein NR(II) complement(2718424..2719518) Methylococcus capsulatus str. Bath 3102529 YP_114954.1 CDS MCA2543 NC_002977.6 2719774 2723727 D includes an intein; identified by similarity to OMNI:TM0118; match to protein family HMM PF02867; match to protein family HMM TIGR01443; match to protein family HMM TIGR01445; match to protein family HMM TIGR02504; ribonucleoside reductase 2719774..2723727 Methylococcus capsulatus str. Bath 3104471 YP_114955.1 CDS MCA2544 NC_002977.6 2723791 2725311 D hypothetical protein 2723791..2725311 Methylococcus capsulatus str. Bath 3104470 YP_114956.1 CDS MCA2545 NC_002977.6 2725360 2726235 R hypothetical protein complement(2725360..2726235) Methylococcus capsulatus str. Bath 3104710 YP_114957.1 CDS MCA2546 NC_002977.6 2726241 2727083 R identified by similarity to OMNI:NTL01AP01225; hypothetical protein complement(2726241..2727083) Methylococcus capsulatus str. Bath 3104709 YP_114958.1 CDS MCA2547 NC_002977.6 2727052 2728242 R identified by similarity to GP:4753136; match to protein family HMM PF00534; glycosyl transferase family protein complement(2727052..2728242) Methylococcus capsulatus str. Bath 3102277 YP_114959.1 CDS MCA2548 NC_002977.6 2728239 2729606 R hypothetical protein complement(2728239..2729606) Methylococcus capsulatus str. Bath 3102276 YP_114960.1 CDS MCA2549 NC_002977.6 2729655 2730902 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2729655..2730902) Methylococcus capsulatus str. Bath 3105006 YP_114961.1 CDS MCA2550 NC_002977.6 2730899 2731681 R ABC transporter permease complement(2730899..2731681) Methylococcus capsulatus str. Bath 3102477 YP_114962.1 CDS MCA2551 NC_002977.6 2731774 2732214 R hypothetical protein complement(2731774..2732214) Methylococcus capsulatus str. Bath 3104885 YP_114963.1 CDS MCA2552 NC_002977.6 2732435 2733373 R identified by match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase domain-containing protein complement(2732435..2733373) Methylococcus capsulatus str. Bath 3104884 YP_114964.1 CDS MCA2553 NC_002977.6 2733392 2734351 R identified by match to protein family HMM PF01839; hypothetical protein complement(2733392..2734351) Methylococcus capsulatus str. Bath 3103644 YP_114965.1 CDS MCA2554 NC_002977.6 2734618 2734809 D hypothetical protein 2734618..2734809 Methylococcus capsulatus str. Bath 3103643 YP_114966.1 CDS MCA2555 NC_002977.6 2734915 2736300 R hypothetical protein complement(2734915..2736300) Methylococcus capsulatus str. Bath 3104629 YP_114967.1 CDS MCA2556 NC_002977.6 2736454 2737554 R identified by match to protein family HMM PF01609; ISMca1, transposase complement(2736454..2737554) Methylococcus capsulatus str. Bath 3104628 YP_114968.1 CDS MCA2558 NC_002977.6 2738382 2739860 D identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 2738382..2739860 Methylococcus capsulatus str. Bath 3104375 YP_114969.1 CDS MCA2561 NC_002977.6 2740479 2743352 D identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 2740479..2743352 Methylococcus capsulatus str. Bath 3102343 YP_114970.1 CDS MCA2562 NC_002977.6 2743576 2745312 D identified by match to protein family HMM PF00534; glycosyl transferase family protein 2743576..2745312 Methylococcus capsulatus str. Bath 3103355 YP_114971.1 CDS MCA2563 NC_002977.6 2745396 2746265 D identified by similarity to GP:8250587; hypothetical protein 2745396..2746265 Methylococcus capsulatus str. Bath 3103354 YP_114972.1 CDS MCA2564 NC_002977.6 2746761 2747651 R catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate; phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase complement(2746761..2747651) Methylococcus capsulatus str. Bath 3102737 YP_114973.1 CDS MCA2565 NC_002977.6 2748031 2748330 D hypothetical protein 2748031..2748330 Methylococcus capsulatus str. Bath 3102736 YP_114974.1 CDS MCA2566 NC_002977.6 2748331 2749632 D identified by similarity to GP:7649572; match to protein family HMM PF01565; oxidoreductase, FAD-binding 2748331..2749632 Methylococcus capsulatus str. Bath 3102165 YP_114975.1 CDS MCA2567 NC_002977.6 2749635 2750372 D identified by match to protein family HMM PF00106; short chain dehydrogenase 2749635..2750372 Methylococcus capsulatus str. Bath 3102166 YP_114976.1 CDS MCA2569 NC_002977.6 2750871 2751272 R hypothetical protein complement(2750871..2751272) Methylococcus capsulatus str. Bath 3103684 YP_114977.1 CDS MCA2570 NC_002977.6 2751269 2752570 R identified by similarity to OMNI:NTL02ML5433; hypothetical protein complement(2751269..2752570) Methylococcus capsulatus str. Bath 3104791 YP_114978.1 CDS MCA2571 NC_002977.6 2752619 2753716 R identified by similarity to GP:17130075; match to protein family HMM PF04055; radical SAM protein complement(2752619..2753716) Methylococcus capsulatus str. Bath 3104790 YP_114979.1 CDS MCA2572 NC_002977.6 2753716 2754096 R identified by similarity to OMNI:NTL01MT00637; match to protein family HMM PF01986; hypothetical protein complement(2753716..2754096) Methylococcus capsulatus str. Bath 3102804 YP_114980.1 CDS polI NC_002977.6 2754083 2756803 R identified by similarity to SP:P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF01612; match to protein family HMM PF02739; match to protein family HMM TIGR00593; DNA polymerase I complement(2754083..2756803) Methylococcus capsulatus str. Bath 3103895 YP_114981.1 CDS MCA2574 NC_002977.6 2756975 2757415 D identified by similarity to GP:12698380; hypothetical protein 2756975..2757415 Methylococcus capsulatus str. Bath 3103335 YP_114982.1 CDS MCA2575 NC_002977.6 2757466 2758623 D hypothetical protein 2757466..2758623 Methylococcus capsulatus str. Bath 3103648 YP_114983.1 CDS MCA2576 NC_002977.6 2758784 2761561 R identified by similarity to SP:P07658; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; formate dehydrogenase subunit alpha complement(2758784..2761561) Methylococcus capsulatus str. Bath 3104438 YP_114984.1 CDS MCA2577 NC_002977.6 2761558 2763243 R identified by similarity to GP:4007678; match to protein family HMM PF01257; match to protein family HMM PF01512; dehydrogenase subunit complement(2761558..2763243) Methylococcus capsulatus str. Bath 3104357 YP_114985.1 CDS MCA2578 NC_002977.6 2763322 2764107 R identified by match to protein family HMM PF00005; molybdenum ABC transporter ATP-binding protein complement(2763322..2764107) Methylococcus capsulatus str. Bath 3104058 YP_114986.1 CDS MCA2579 NC_002977.6 2764132 2764800 R identified by similarity to SP:P09834; match to protein family HMM PF00528; match to protein family HMM TIGR02141; molybdenum ABC transporter permease complement(2764132..2764800) Methylococcus capsulatus str. Bath 3103374 YP_114987.1 CDS MCA2580 NC_002977.6 2764818 2765576 R identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdenum ABC transporter substrate-binding protein complement(2764818..2765576) Methylococcus capsulatus str. Bath 3103539 YP_114988.1 CDS rpe NC_002977.6 2766321 2767013 D identified by similarity to SP:P32661; match to protein family HMM PF00834; match to protein family HMM TIGR01163; ribulose-phosphate 3-epimerase 2766321..2767013 Methylococcus capsulatus str. Bath 3104203 YP_114989.1 CDS cbbZ NC_002977.6 2767010 2767693 D identified by similarity to SP:P32662; match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; phosphoglycolate phosphatase 2767010..2767693 Methylococcus capsulatus str. Bath 3103155 YP_114990.1 CDS trpE NC_002977.6 2767812 2769299 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 2767812..2769299 Methylococcus capsulatus str. Bath 3104398 YP_114991.1 CDS trpG NC_002977.6 2769296 2769883 D identified by similarity to SP:P20576; match to protein family HMM PF00117; match to protein family HMM TIGR00566; anthranilate synthase component II 2769296..2769883 Methylococcus capsulatus str. Bath 3103723 YP_114992.1 CDS trpD NC_002977.6 2769890 2770915 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 2769890..2770915 Methylococcus capsulatus str. Bath 3103255 YP_114993.1 CDS MCA2587 NC_002977.6 2770921 2771718 D identified by similarity to SP:P20577; match to protein family HMM PF00218; indole-3-glycerol phosphate synthase 2770921..2771718 Methylococcus capsulatus str. Bath 3102978 YP_114994.1 CDS lpxD NC_002977.6 2771762 2772826 D identified by similarity to SP:P21645; match to protein family HMM PF00132; match to protein family HMM TIGR01853; UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase 2771762..2772826 Methylococcus capsulatus str. Bath 3104051 YP_114995.1 CDS mopE NC_002977.6 2772925 2774547 R identified by similarity to GP:13506915; surface-associated protein complement(2772925..2774547) Methylococcus capsulatus str. Bath 3103778 YP_114996.1 CDS MCA2590 NC_002977.6 2774574 2776895 R cytochrome c peroxidase complement(2774574..2776895) Methylococcus capsulatus str. Bath 3103502 YP_114997.1 CDS MCA2591 NC_002977.6 2777117 2777212 R aquaporin Z domain-containing protein complement(2777117..2777212) Methylococcus capsulatus str. Bath 3104028 YP_114998.1 CDS MCA2592 NC_002977.6 2777312 2777974 R identified by similarity to OMNI:NT01MC0675; hypothetical protein complement(2777312..2777974) Methylococcus capsulatus str. Bath 3104232 YP_114999.1 CDS nspC NC_002977.6 2778072 2779199 D identified by similarity to GP:498170; match to protein family HMM PF00278; carboxynorspermidine decarboxylase 2778072..2779199 Methylococcus capsulatus str. Bath 3103145 YP_115000.1 CDS priA NC_002977.6 2779193 2781394 R identified by similarity to SP:P17888; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM TIGR00595; primosomal protein N` complement(2779193..2781394) Methylococcus capsulatus str. Bath 3103161 YP_115001.1 CDS MCA2596 NC_002977.6 2781759 2782349 D identified by similarity to OMNI:NTL01XF01913; match to protein family HMM PF01844; HNH endonuclease domain-containing protein 2781759..2782349 Methylococcus capsulatus str. Bath 3102717 YP_115002.1 CDS pyk NC_002977.6 2782363 2783829 R identified by similarity to SP:P21599; match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase complement(2782363..2783829) Methylococcus capsulatus str. Bath 3102928 YP_115003.1 CDS gap NC_002977.6 2783826 2784836 R identified by similarity to SP:P50321; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde 3-phosphate dehydrogenase complement(2783826..2784836) Methylococcus capsulatus str. Bath 3103545 YP_115004.1 CDS MCA2599 NC_002977.6 2785084 2785557 R hypothetical protein complement(2785084..2785557) Methylococcus capsulatus str. Bath 3103796 YP_115005.1 CDS MCA2600 NC_002977.6 2785556 2787910 D identified by match to protein family HMM PF05362; ATP-dependent protease 2785556..2787910 Methylococcus capsulatus str. Bath 3103610 YP_115006.1 CDS MCA2601 NC_002977.6 2787918 2788766 R identified by similarity to GP:4008541; match to protein family HMM PF03372; hypothetical protein complement(2787918..2788766) Methylococcus capsulatus str. Bath 3103581 YP_115007.1 CDS dsbA NC_002977.6 2788778 2789428 R identified by similarity to SP:P32557; match to protein family HMM PF01323; thiol:disulfide interchange protein DsbA complement(2788778..2789428) Methylococcus capsulatus str. Bath 3104110 YP_115008.1 CDS MCA2603 NC_002977.6 2789536 2790144 R identified by similarity to SP:P43302; match to protein family HMM PF00034; cytochrome c family protein complement(2789536..2790144) Methylococcus capsulatus str. Bath 3104136 YP_115009.1 CDS MCA2604 NC_002977.6 2790310 2790942 D identified by similarity to SP:Q9HT81; match to protein family HMM TIGR00650; GTP-binding protein 2790310..2790942 Methylococcus capsulatus str. Bath 3103550 YP_115010.1 CDS MCA2605 NC_002977.6 2791084 2792346 R identified by similarity to GP:6409238; match to protein family HMM PF00128; alpha amylase complement(2791084..2792346) Methylococcus capsulatus str. Bath 3103049 YP_115011.1 CDS glgA NC_002977.6 2792353 2793894 R catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase complement(2792353..2793894) Methylococcus capsulatus str. Bath 3104148 YP_115012.1 CDS cstA NC_002977.6 2794498 2796573 D identified by match to protein family HMM PF02554; carbon starvation protein CstA 2794498..2796573 Methylococcus capsulatus str. Bath 3103897 YP_115013.1 CDS MCA2608 NC_002977.6 2796587 2799064 D identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein 2796587..2799064 Methylococcus capsulatus str. Bath 3103892 YP_115014.1 CDS MCA2609 NC_002977.6 2799021 2799833 R identified by match to protein family HMM PF00459; inositol monophosphatase complement(2799021..2799833) Methylococcus capsulatus str. Bath 3103566 YP_115015.1 CDS MCA2610 NC_002977.6 2799932 2800675 D identified by similarity to SP:P77438; match to protein family HMM PF00588; match to protein family HMM TIGR00050; RNA methyltransferase 2799932..2800675 Methylococcus capsulatus str. Bath 3103586 YP_115016.1 CDS cysE-2 NC_002977.6 2800659 2801444 D identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine acetyltransferase 2800659..2801444 Methylococcus capsulatus str. Bath 3102932 YP_115017.1 CDS MCA2612 NC_002977.6 2801422 2801847 R identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein complement(2801422..2801847) Methylococcus capsulatus str. Bath 3104380 YP_115018.1 CDS MCA2614 NC_002977.6 2802293 2803108 D identified by similarity to GP:17427791; match to protein family HMM PF00085; thioredoxin family protein 2802293..2803108 Methylococcus capsulatus str. Bath 3103593 YP_115019.1 CDS vanX NC_002977.6 2803125 2803763 D identified by similarity to SP:P77790; match to protein family HMM PF01427; D-alanyl-D-alanine dipeptidase 2803125..2803763 Methylococcus capsulatus str. Bath 3103366 YP_115020.1 CDS MCA2616 NC_002977.6 2803864 2804625 D identified by match to protein family HMM PF01694; rhomboid family protein 2803864..2804625 Methylococcus capsulatus str. Bath 3104547 YP_115021.1 CDS MCA2617 NC_002977.6 2804680 2804973 R identified by similarity to OMNI:NTL03PA02805; hypothetical protein complement(2804680..2804973) Methylococcus capsulatus str. Bath 3103642 YP_115022.1 CDS MCA2618 NC_002977.6 2805227 2805598 D identified by similarity to SP:P04369; match to protein family HMM PF00034; cytochrome c-555 2805227..2805598 Methylococcus capsulatus str. Bath 3103865 YP_115023.1 CDS MCA2619 NC_002977.6 2805688 2806776 R identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase complement(2805688..2806776) Methylococcus capsulatus str. Bath 3103734 YP_115024.1 CDS smpB NC_002977.6 2806860 2807333 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(2806860..2807333) Methylococcus capsulatus str. Bath 3103118 YP_115025.1 CDS MCA2621 NC_002977.6 2807461 2808819 D identified by match to protein family HMM PF00209; sodium-dependent transporter family protein 2807461..2808819 Methylococcus capsulatus str. Bath 3104502 YP_115026.1 CDS smpA NC_002977.6 2809121 2809606 R identified by similarity to SP:P23089; match to protein family HMM PF04355; small protein A complement(2809121..2809606) Methylococcus capsulatus str. Bath 3103424 YP_115027.1 CDS fur NC_002977.6 2809651 2810082 D identified by similarity to SP:P06975; match to protein family HMM PF01475; ferric uptake regulation protein 2809651..2810082 Methylococcus capsulatus str. Bath 3103387 YP_115028.1 CDS MCA2624 NC_002977.6 2810105 2811352 D identified by similarity to SP:P75958; match to protein family HMM PF02687; match to protein family HMM TIGR02212; lipoprotein ABC transporter permease LolE 2810105..2811352 Methylococcus capsulatus str. Bath 3103209 YP_115029.1 CDS MCA2625 NC_002977.6 2811345 2812019 D identified by similarity to SP:P75957; match to protein family HMM PF00005; match to protein family HMM TIGR02211; lipoprotein ABC transporter ATP-binding protein LolD 2811345..2812019 Methylococcus capsulatus str. Bath 3103447 YP_115030.1 CDS MCA2626 NC_002977.6 2812032 2812628 R identified by similarity to OMNI:VC1880; hypothetical protein complement(2812032..2812628) Methylococcus capsulatus str. Bath 3104097 YP_115031.1 CDS MCA2627 NC_002977.6 2812645 2815050 D identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361; DNA internalization-related competence protein ComEC/Rec2 2812645..2815050 Methylococcus capsulatus str. Bath 3104406 YP_115032.1 CDS MCA2628 NC_002977.6 2815013 2816662 R identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR02034; in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from EScherichia coli involved in cysteine biosynthesis; bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase complement(2815013..2816662) Methylococcus capsulatus str. Bath 3103637 YP_115033.1 CDS cysD NC_002977.6 2816780 2817688 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase complement(2816780..2817688) Methylococcus capsulatus str. Bath 3104542 YP_115034.1 CDS MCA2630 NC_002977.6 2817865 2818632 R hypothetical protein complement(2817865..2818632) Methylococcus capsulatus str. Bath 3103020 YP_115035.1 CDS MCA2631 NC_002977.6 2818798 2819052 R hypothetical protein complement(2818798..2819052) Methylococcus capsulatus str. Bath 3103367 YP_115036.1 CDS MCA2632 NC_002977.6 2819179 2819643 R identified by similarity to OMNI:NTL01RS3173; hypothetical protein complement(2819179..2819643) Methylococcus capsulatus str. Bath 3103950 YP_115037.1 CDS MCA2633 NC_002977.6 2819640 2820023 R prophage LambdaMc01, site-specific recombinase resolvase, truncation complement(2819640..2820023) Methylococcus capsulatus str. Bath 3103382 YP_115038.1 CDS MCA2634 NC_002977.6 2820020 2821399 R identified by similarity to GP:17430196; match to protein family HMM PF00239; match to protein family HMM PF07508; prophage LambdaMc01, site-specific recombinase resolvase complement(2820020..2821399) Methylococcus capsulatus str. Bath 3103765 YP_115039.1 CDS MCA2635 NC_002977.6 2821399 2821842 R identified by similarity to OMNI:NTL01RS3170; hypothetical protein complement(2821399..2821842) Methylococcus capsulatus str. Bath 3104466 YP_115040.1 CDS MCA2636 NC_002977.6 2821842 2822105 R hypothetical protein complement(2821842..2822105) Methylococcus capsulatus str. Bath 3104112 YP_115041.1 CDS MCA2637 NC_002977.6 2822119 2824365 R identified by similarity to GP:17430265; hypothetical protein complement(2822119..2824365) Methylococcus capsulatus str. Bath 3104115 YP_115042.1 CDS MCA2638 NC_002977.6 2824384 2824956 R identified by similarity to GP:3378296; hypothetical protein complement(2824384..2824956) Methylococcus capsulatus str. Bath 3103743 YP_115043.1 CDS MCA2639 NC_002977.6 2824961 2825422 R identified by similarity to GP:17430264; match to protein family HMM PF00376; match to protein family HMM TIGR01764; hypothetical protein complement(2824961..2825422) Methylococcus capsulatus str. Bath 3104383 YP_115044.1 CDS MCA2640 NC_002977.6 2825651 2825914 D identified by similarity to GP:17430263; hypothetical protein 2825651..2825914 Methylococcus capsulatus str. Bath 3102697 YP_115045.1 CDS MCA2641 NC_002977.6 2825925 2826404 D identified by similarity to GP:17430262; hypothetical protein 2825925..2826404 Methylococcus capsulatus str. Bath 3103181 YP_115046.1 CDS MCA2642 NC_002977.6 2826408 2827166 D identified by similarity to OMNI:NTL01XF01664; match to protein family HMM PF02498; hypothetical protein 2826408..2827166 Methylococcus capsulatus str. Bath 3104531 YP_115047.1 CDS MCA2643 NC_002977.6 2827166 2827984 D identified by similarity to GP:17427847; hypothetical protein 2827166..2827984 Methylococcus capsulatus str. Bath 3103226 YP_115048.1 CDS MCA2644 NC_002977.6 2827988 2828614 D identified by similarity to GP:17430259; hypothetical protein 2827988..2828614 Methylococcus capsulatus str. Bath 3103475 YP_115049.1 CDS MCA2645 NC_002977.6 2828676 2829149 D identified by similarity to GP:17430258; hypothetical protein 2828676..2829149 Methylococcus capsulatus str. Bath 3104570 YP_115050.1 CDS MCA2646 NC_002977.6 2829149 2829877 D identified by similarity to GP:17430256; hypothetical protein 2829149..2829877 Methylococcus capsulatus str. Bath 3102950 YP_115051.1 CDS MCA2647 NC_002977.6 2829881 2830153 D identified by similarity to GP:17430255; hypothetical protein 2829881..2830153 Methylococcus capsulatus str. Bath 3104425 YP_115052.1 CDS MCA2648 NC_002977.6 2830150 2832417 D identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613; hypothetical protein 2830150..2832417 Methylococcus capsulatus str. Bath 3104426 YP_115053.1 CDS MCA2649 NC_002977.6 2832553 2833029 D identified by similarity to OMNI:NTL01RS3228; hypothetical protein 2832553..2833029 Methylococcus capsulatus str. Bath 3103722 YP_115054.1 CDS MCA2650 NC_002977.6 2833031 2833240 D identified by similarity to GP:17427852; hypothetical protein 2833031..2833240 Methylococcus capsulatus str. Bath 3104178 YP_115055.1 CDS MCA2651 NC_002977.6 2833233 2833649 D identified by similarity to GP:17430251; hypothetical protein 2833233..2833649 Methylococcus capsulatus str. Bath 3104475 YP_115056.1 CDS MCA2652 NC_002977.6 2833646 2833882 D identified by similarity to OMNI:NTL02ML1026; hypothetical protein 2833646..2833882 Methylococcus capsulatus str. Bath 3103573 YP_115057.1 CDS MCA2653 NC_002977.6 2833879 2834214 D identified by similarity to OMNI:NTL01SMA00299; match to protein family HMM PF05016; hypothetical protein 2833879..2834214 Methylococcus capsulatus str. Bath 3104031 YP_115058.1 CDS MCA2654 NC_002977.6 2834667 2836010 D identified by match to protein family HMM PF01555; prophage LambdaMc01, DNA methyltransferase 2834667..2836010 Methylococcus capsulatus str. Bath 3103751 YP_115059.1 CDS MCA2655 NC_002977.6 2836007 2837272 D identified by similarity to GP:17427857; match to protein family HMM PF01555; match to protein family HMM PF02195; prophage LambdaMc01, DNA methyltransferase 2836007..2837272 Methylococcus capsulatus str. Bath 3104508 YP_115060.1 CDS MCA2656 NC_002977.6 2837239 2837829 R identified by similarity to GP:17430238; hypothetical protein complement(2837239..2837829) Methylococcus capsulatus str. Bath 3104344 YP_115061.1 CDS MCA2657 NC_002977.6 2837940 2838476 D identified by similarity to OMNI:NTL01RSA0579; hypothetical protein 2837940..2838476 Methylococcus capsulatus str. Bath 3103435 YP_115062.1 CDS MCA2658 NC_002977.6 2838476 2840446 D identified by match to protein family HMM PF05876; prophage LambdaMc01, terminase, large subunit 2838476..2840446 Methylococcus capsulatus str. Bath 3103771 YP_115063.1 CDS MCA2659 NC_002977.6 2840454 2840660 D identified by similarity to GP:17427868; hypothetical protein 2840454..2840660 Methylococcus capsulatus str. Bath 3104574 YP_115064.1 CDS MCA2660 NC_002977.6 2840660 2842168 D identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539; prophage LambdaMc01, lambda family portal protein 2840660..2842168 Methylococcus capsulatus str. Bath 3103437 YP_115065.1 CDS MCA2661 NC_002977.6 2842178 2843404 D identified by match to protein family HMM PF01343; prophage LambdaMc01, U7 family peptidase 2842178..2843404 Methylococcus capsulatus str. Bath 3104473 YP_115066.1 CDS MCA2662 NC_002977.6 2843406 2843783 D identified by similarity to OMNI:NTL01RS0859; hypothetical protein 2843406..2843783 Methylococcus capsulatus str. Bath 3103094 YP_115067.1 CDS MCA2663 NC_002977.6 2843786 2844802 D identified by similarity to GP:6723249; hypothetical protein 2843786..2844802 Methylococcus capsulatus str. Bath 3103783 YP_115068.1 CDS MCA2664 NC_002977.6 2844799 2845101 D identified by similarity to GP:17427873; hypothetical protein 2844799..2845101 Methylococcus capsulatus str. Bath 3104234 YP_115069.1 CDS MCA2665 NC_002977.6 2845105 2845551 D identified by similarity to GP:17427874; hypothetical protein 2845105..2845551 Methylococcus capsulatus str. Bath 3104177 YP_115070.1 CDS MCA2666 NC_002977.6 2845558 2845758 D hypothetical protein 2845558..2845758 Methylococcus capsulatus str. Bath 3103813 YP_115071.1 CDS MCA2667 NC_002977.6 2845755 2846507 D identified by similarity to GP:17427875; hypothetical protein 2845755..2846507 Methylococcus capsulatus str. Bath 3103298 YP_115072.1 CDS MCA2668 NC_002977.6 2846521 2846916 D identified by similarity to GP:17427876; hypothetical protein 2846521..2846916 Methylococcus capsulatus str. Bath 3104135 YP_115073.1 CDS MCA2669 NC_002977.6 2847013 2847741 D identified by similarity to GP:17427878; hypothetical protein 2847013..2847741 Methylococcus capsulatus str. Bath 3104220 YP_115074.1 CDS MCA2670 NC_002977.6 2847759 2851790 D identified by similarity to GP:6901589; prophage LambdaMc01, tail tape measure protein 2847759..2851790 Methylococcus capsulatus str. Bath 3103936 YP_115075.1 CDS MCA2671 NC_002977.6 2851834 2852208 D identified by similarity to OMNI:NT01MC3182; hypothetical protein 2851834..2852208 Methylococcus capsulatus str. Bath 3103955 YP_115076.1 CDS MCA2672 NC_002977.6 2852211 2855795 D identified by similarity to GP:17427887; hypothetical protein 2852211..2855795 Methylococcus capsulatus str. Bath 3103370 YP_115077.1 CDS MCA2673 NC_002977.6 2855819 2857087 D identified by similarity to GP:17427888; hypothetical protein 2855819..2857087 Methylococcus capsulatus str. Bath 3103696 YP_115078.1 CDS MCA2674 NC_002977.6 2857091 2858176 D identified by similarity to GP:17427889; hypothetical protein 2857091..2858176 Methylococcus capsulatus str. Bath 3103710 YP_115079.1 CDS MCA2675 NC_002977.6 2858173 2858568 D identified by similarity to GP:17427890; hypothetical protein 2858173..2858568 Methylococcus capsulatus str. Bath 3103777 YP_115080.1 CDS MCA2676 NC_002977.6 2858572 2860530 D hypothetical protein 2858572..2860530 Methylococcus capsulatus str. Bath 3104061 YP_115081.1 CDS MCA2677 NC_002977.6 2860523 2860744 D identified by similarity to GP:17427892; hypothetical protein 2860523..2860744 Methylococcus capsulatus str. Bath 3103692 YP_115082.1 CDS MCA2678 NC_002977.6 2860831 2861133 D identified by similarity to GP:17427893; hypothetical protein 2860831..2861133 Methylococcus capsulatus str. Bath 3103058 YP_115083.1 CDS MCA2679 NC_002977.6 2861130 2861606 D identified by similarity to GP:17430219; hypothetical protein 2861130..2861606 Methylococcus capsulatus str. Bath 3103115 YP_115084.1 CDS MCA2680 NC_002977.6 2861603 2862061 D identified by similarity to SP:P10439; match to protein family HMM PF00959; prophage LambdaMc01, lysozyme 2861603..2862061 Methylococcus capsulatus str. Bath 3103378 YP_115085.1 CDS MCA2681 NC_002977.6 2862062 2863246 R hypothetical protein complement(2862062..2863246) Methylococcus capsulatus str. Bath 3103935 YP_115086.1 CDS MCA2682 NC_002977.6 2863366 2866143 R identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851; prophage LambdaMc01, SNF2 family helicase complement(2863366..2866143) Methylococcus capsulatus str. Bath 3104092 YP_115087.1 CDS MCA2683 NC_002977.6 2866153 2866653 R hypothetical protein complement(2866153..2866653) Methylococcus capsulatus str. Bath 3104589 YP_115088.1 CDS MCA2684 NC_002977.6 2866650 2869787 R identified by similarity to GP:19887865; hypothetical protein complement(2866650..2869787) Methylococcus capsulatus str. Bath 3103056 YP_115089.1 CDS MCA2685 NC_002977.6 2869886 2870875 R hypothetical protein complement(2869886..2870875) Methylococcus capsulatus str. Bath 3104400 YP_115090.1 CDS MCA2686 NC_002977.6 2870875 2873616 R hypothetical protein complement(2870875..2873616) Methylococcus capsulatus str. Bath 3103914 YP_115091.1 CDS MCA2687 NC_002977.6 2873899 2874999 D identified by match to protein family HMM PF01609; prophage LambdaMc01, ISMca1, transposase 2873899..2874999 Methylococcus capsulatus str. Bath 3104116 YP_115092.1 CDS MCA2688 NC_002977.6 2875560 2875922 D hypothetical protein 2875560..2875922 Methylococcus capsulatus str. Bath 3103839 YP_115093.1 CDS MCA2689 NC_002977.6 2875925 2877013 R identified by match to protein family HMM PF00665; match to protein family HMM PF01527; match to protein family HMM TIGR01199; prophage LambdaMc01, ISMca4, transposase, OrfAB complement(2875925..2877013) Methylococcus capsulatus str. Bath 3102951 YP_115094.1 CDS ssb NC_002977.6 2877665 2878183 R identified by similarity to SP:P02339; match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein complement(2877665..2878183) Methylococcus capsulatus str. Bath 3103764 YP_115095.1 CDS MCA2691 NC_002977.6 2878218 2879582 R identified by similarity to SP:P77726; match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator family transporter complement(2878218..2879582) Methylococcus capsulatus str. Bath 3104118 YP_115096.1 CDS MCA2692 NC_002977.6 2879702 2880649 R identified by similarity to SP:P76146; match to protein family HMM PF05249; hypothetical protein complement(2879702..2880649) Methylococcus capsulatus str. Bath 3103926 YP_115097.1 CDS MCA2693 NC_002977.6 2880646 2881038 R hypothetical protein complement(2880646..2881038) Methylococcus capsulatus str. Bath 3103439 YP_115098.1 CDS uvrA NC_002977.6 2881050 2883878 D identified by similarity to SP:P07671; match to protein family HMM PF00005; match to protein family HMM TIGR00630; excinuclease ABC subunit A 2881050..2883878 Methylococcus capsulatus str. Bath 3103741 YP_115099.1 CDS MCA2695 NC_002977.6 2883968 2884141 D hypothetical protein 2883968..2884141 Methylococcus capsulatus str. Bath 3104437 YP_115100.1 CDS MCA2697 NC_002977.6 2885108 2885278 R hypothetical protein complement(2885108..2885278) Methylococcus capsulatus str. Bath 3103822 YP_115101.1 CDS MCA2698 NC_002977.6 2885269 2885562 D identified by similarity to GP:19916392; match to protein family HMM TIGR02230; hypothetical protein 2885269..2885562 Methylococcus capsulatus str. Bath 3103456 YP_115102.1 CDS atpB-2 NC_002977.6 2885569 2886255 D produces ATP from ADP in the presence of a proton gradient across the membrane; subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 2885569..2886255 Methylococcus capsulatus str. Bath 3103463 YP_115103.1 CDS atpE-2 NC_002977.6 2886252 2886518 D identified by similarity to SP:Q05366; match to protein family HMM PF00137; match to protein family HMM TIGR01260; ATP synthase F0 subunit C 2886252..2886518 Methylococcus capsulatus str. Bath 3104592 YP_115104.1 CDS MCA2701 NC_002977.6 2886521 2887282 D identified by match to protein family HMM PF00430; ATP synthase F1 subunit delta 2886521..2887282 Methylococcus capsulatus str. Bath 3103742 YP_115105.1 CDS MCA2703 NC_002977.6 2887788 2888684 R identified by match to protein family HMM PF00089; serine protease complement(2887788..2888684) Methylococcus capsulatus str. Bath 3102763 YP_115106.1 CDS MCA2704 NC_002977.6 2888751 2890445 R identified by match to protein family HMM PF00082; serine protease complement(2888751..2890445) Methylococcus capsulatus str. Bath 3104402 YP_115107.1 CDS MCA2706 NC_002977.6 2890813 2891877 D identified by match to protein family HMM PF00165; AraC family transcriptional regulator 2890813..2891877 Methylococcus capsulatus str. Bath 3103481 YP_115108.1 CDS atpA-2 NC_002977.6 2891837 2893348 D produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 2891837..2893348 Methylococcus capsulatus str. Bath 3104545 YP_115109.1 CDS atpG-2 NC_002977.6 2893345 2894172 D identified by match to protein family HMM PF00231; ATP synthase F1 subunit gamma 2893345..2894172 Methylococcus capsulatus str. Bath 3103785 YP_115110.1 CDS MCA2709 NC_002977.6 2894347 2895435 D identified by similarity to OMNI:NTL01SMA00234; match to protein family HMM PF01594; hypothetical protein 2894347..2895435 Methylococcus capsulatus str. Bath 3103112 YP_115111.1 CDS thiC NC_002977.6 2895662 2897536 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 2895662..2897536 Methylococcus capsulatus str. Bath 3103797 YP_115112.1 CDS cyp51 NC_002977.6 2897545 2899200 D identified by similarity to SP:P77901; match to protein family HMM PF00067; cytochrome P450 51 2897545..2899200 Methylococcus capsulatus str. Bath 3103790 YP_115113.1 CDS MCA2712 NC_002977.6 2899247 2899915 D identified by similarity to OMNI:NTL01SMB00554; hypothetical protein 2899247..2899915 Methylococcus capsulatus str. Bath 3103457 YP_115114.1 CDS MCA2713 NC_002977.6 2899912 2900961 D identified by similarity to SP:P24173; match to protein family HMM PF01075; lipopolysaccharide heptosyltransferase-1 2899912..2900961 Methylococcus capsulatus str. Bath 3104397 YP_115115.1 CDS MCA2714 NC_002977.6 2900966 2901841 R identified by similarity to GP:17427985; hypothetical protein complement(2900966..2901841) Methylococcus capsulatus str. Bath 3104395 YP_115116.1 CDS MCA2715 NC_002977.6 2901892 2902977 R identified by match to protein family HMM PF01266; oxidoreductase, FAD-binding complement(2901892..2902977) Methylococcus capsulatus str. Bath 3104213 YP_115117.1 CDS MCA2716 NC_002977.6 2903019 2905997 R hypothetical protein complement(2903019..2905997) Methylococcus capsulatus str. Bath 3104243 YP_115118.1 CDS MCA2717 NC_002977.6 2905984 2906391 D hypothetical protein 2905984..2906391 Methylococcus capsulatus str. Bath 3104157 YP_115119.1 CDS MCA2718 NC_002977.6 2906568 2907737 D identified by similarity to GP:1785478; hypothetical protein 2906568..2907737 Methylococcus capsulatus str. Bath 3104474 YP_115120.1 CDS MCA2719 NC_002977.6 2907734 2908831 D identified by similarity to SP:P37973; match to protein family HMM TIGR01730; heavy metal efflux system protein 2907734..2908831 Methylococcus capsulatus str. Bath 3104532 YP_115121.1 CDS MCA2720 NC_002977.6 2908828 2911878 D identified by similarity to SP:P94177; match to protein family HMM TIGR00914; CzcA family heavy metal efflux protein 2908828..2911878 Methylococcus capsulatus str. Bath 3103284 YP_115124.1 CDS MCA2724 NC_002977.6 2917848 2919680 D identified by similarity to SP:P22317; match to protein family HMM PF01257; match to protein family HMM PF01512; NAD-reducing hydrogenase subunit alpha 2917848..2919680 Methylococcus capsulatus str. Bath 3104287 YP_115125.1 CDS MCA2725 NC_002977.6 2919697 2920428 D identified by similarity to SP:P22318; match to protein family HMM PF00111; NAD-reducing hydrogenase subunit gamma 2919697..2920428 Methylococcus capsulatus str. Bath 3103866 YP_115126.1 CDS MCA2726 NC_002977.6 2920421 2920963 D identified by similarity to SP:P22319; match to protein family HMM PF01058; NAD-reducing hydrogenase subunit delta 2920421..2920963 Methylococcus capsulatus str. Bath 3103871 YP_115127.1 CDS lgt NC_002977.6 2921026 2921814 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 2921026..2921814 Methylococcus capsulatus str. Bath 3103979 YP_115128.1 CDS thyA NC_002977.6 2921815 2922597 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 2921815..2922597 Methylococcus capsulatus str. Bath 3103768 YP_115129.1 CDS folA NC_002977.6 2922594 2923112 D identified by similarity to SP:P11045; match to protein family HMM PF00186; dihydrofolate reductase 2922594..2923112 Methylococcus capsulatus str. Bath 3103505 YP_115130.1 CDS moaC NC_002977.6 2923067 2923570 R identified by similarity to SP:P30747; match to protein family HMM PF01967; match to protein family HMM TIGR00581; molybdenum cofactor biosynthesis protein C complement(2923067..2923570) Methylococcus capsulatus str. Bath 3104376 YP_115131.1 CDS MCA2731 NC_002977.6 2923636 2924130 D identified by match to protein family HMM PF01613; flavin reductase-like domain-containing protein 2923636..2924130 Methylococcus capsulatus str. Bath 3104057 YP_115132.1 CDS MCA2732 NC_002977.6 2924120 2925073 D identified by similarity to GP:19915032; hypothetical protein 2924120..2925073 Methylococcus capsulatus str. Bath 3104288 YP_115133.1 CDS MCA2733 NC_002977.6 2925060 2925773 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD-superfamily hydrolase 2925060..2925773 Methylococcus capsulatus str. Bath 3103885 YP_115134.1 CDS MCA2734 NC_002977.6 2925817 2926116 D hypothetical protein 2925817..2926116 Methylococcus capsulatus str. Bath 3104396 YP_115135.1 CDS MCA2735 NC_002977.6 2926250 2927731 D transporter 2926250..2927731 Methylococcus capsulatus str. Bath 3103388 YP_115136.1 CDS MCA2736 NC_002977.6 2927956 2928921 R member of metallo-beta-lactamase; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z complement(2927956..2928921) Methylococcus capsulatus str. Bath 3104204 YP_115137.1 CDS MCA2737 NC_002977.6 2929052 2929528 R hypothetical protein complement(2929052..2929528) Methylococcus capsulatus str. Bath 3104280 YP_115138.1 CDS MCA2738 NC_002977.6 2929677 2930846 R identified by similarity to GP:6899861; match to protein family HMM PF00215; match to protein family HMM PF01380; hexulose-6-phosphate synthase/SIS domain-containing protein complement(2929677..2930846) Methylococcus capsulatus str. Bath 3103498 YP_115139.1 CDS MCA2739 NC_002977.6 2930977 2932005 R hypothetical protein complement(2930977..2932005) Methylococcus capsulatus str. Bath 3102850 YP_115140.1 CDS pyrE NC_002977.6 2932010 2932651 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(2932010..2932651) Methylococcus capsulatus str. Bath 3102862 YP_115141.1 CDS MCA2741 NC_002977.6 2932675 2933718 R identified by similarity to OMNI:NTL03PA03070; hypothetical protein complement(2932675..2933718) Methylococcus capsulatus str. Bath 3102886 YP_115142.1 CDS MCA2742 NC_002977.6 2933824 2934405 D identified by similarity to OMNI:NTL03PA05245; match to protein family HMM PF00597; DedA family protein 2933824..2934405 Methylococcus capsulatus str. Bath 3103927 YP_115143.1 CDS rbcL NC_002977.6 2934677 2936098 D type III RuBisCO; involved in carbon fixation; ribulose bisophosphate carboxylase 2934677..2936098 Methylococcus capsulatus str. Bath 3104087 YP_115144.1 CDS cbbS NC_002977.6 2936124 2936480 D identified by similarity to GP:17646562; match to protein family HMM PF00101; ribulose bisphosphate carboxylase, small subunit 2936124..2936480 Methylococcus capsulatus str. Bath 3104381 YP_115145.1 CDS cbbQ NC_002977.6 2936598 2937398 D identified by similarity to GP:4105515; cbbQ protein 2936598..2937398 Methylococcus capsulatus str. Bath 3104117 YP_115146.1 CDS MCA2747 NC_002977.6 2937676 2939691 D identified by match to protein family HMM PF00553; cellulose-binding domain-containing protein 2937676..2939691 Methylococcus capsulatus str. Bath 3104188 YP_115147.1 CDS MCA2748 NC_002977.6 2939713 2939910 D hypothetical protein 2939713..2939910 Methylococcus capsulatus str. Bath 3102921 YP_115148.1 CDS MCA2750 NC_002977.6 2940093 2941724 D identified by match to protein family HMM PF00672; match to protein family HMM PF07228; HAMP domain-containing protein 2940093..2941724 Methylococcus capsulatus str. Bath 3104382 YP_115149.1 CDS MCA2751 NC_002977.6 2941848 2943773 D identified by match to protein family HMM PF00593; TonB domain-containing protein 2941848..2943773 Methylococcus capsulatus str. Bath 3104418 YP_115150.1 CDS MCA2752 NC_002977.6 2943839 2944612 D hypothetical protein 2943839..2944612 Methylococcus capsulatus str. Bath 3104588 YP_115151.1 CDS MCA2753 NC_002977.6 2944780 2945562 D hypothetical protein 2944780..2945562 Methylococcus capsulatus str. Bath 3103789 YP_115152.1 CDS cbbO NC_002977.6 2945784 2948120 D identified by similarity to GP:4433775; match to protein family HMM PF00092; cbbO protein 2945784..2948120 Methylococcus capsulatus str. Bath 3103996 YP_115153.1 CDS MCA2756 NC_002977.6 2948491 2949876 D identified by similarity to SP:Q50695; hypothetical protein 2948491..2949876 Methylococcus capsulatus str. Bath 3102961 YP_115154.1 CDS MCA2757 NC_002977.6 2949655 2950509 R identified by match to protein family HMM PF01758; bile acid transporter family protein complement(2949655..2950509) Methylococcus capsulatus str. Bath 3104496 YP_115155.1 CDS MCA2758 NC_002977.6 2950938 2953643 D hypothetical protein 2950938..2953643 Methylococcus capsulatus str. Bath 3104056 YP_115156.1 CDS MCA2759 NC_002977.6 2953703 2954281 D hypothetical protein 2953703..2954281 Methylococcus capsulatus str. Bath 3102677 YP_115157.1 CDS MCA2760 NC_002977.6 2954370 2955719 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(2954370..2955719) Methylococcus capsulatus str. Bath 3103270 YP_115158.1 CDS MCA2761 NC_002977.6 2955716 2956312 R identified by similarity to SP:P21369; match to protein family HMM PF00857; pyrazinamidase/nicotinamidase complement(2955716..2956312) Methylococcus capsulatus str. Bath 3104483 YP_115159.1 CDS MCA2762 NC_002977.6 2956430 2956690 D hypothetical protein 2956430..2956690 Methylococcus capsulatus str. Bath 3103766 YP_115160.1 CDS MCA2763 NC_002977.6 2956708 2957481 R lipoprotein complement(2956708..2957481) Methylococcus capsulatus str. Bath 3104323 YP_115161.1 CDS MCA2764 NC_002977.6 2957576 2957944 R lipoprotein complement(2957576..2957944) Methylococcus capsulatus str. Bath 3103409 YP_115162.1 CDS MCA2765 NC_002977.6 2958055 2958708 R hypothetical protein complement(2958055..2958708) Methylococcus capsulatus str. Bath 3104457 YP_115163.1 CDS MCA2766 NC_002977.6 2958881 2959315 R identified by similarity to OMNI:NTL01SS01176; match to protein family HMM PF01724; hypothetical protein complement(2958881..2959315) Methylococcus capsulatus str. Bath 3102872 YP_115164.1 CDS pntB NC_002977.6 2959374 2960771 R identified by similarity to SP:P07002; match to protein family HMM PF02233; NAD(P) transhydrogenase subunit beta complement(2959374..2960771) Methylococcus capsulatus str. Bath 3104533 YP_115165.1 CDS pntA NC_002977.6 2960790 2962328 R forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha complement(2960790..2962328) Methylococcus capsulatus str. Bath 3103543 YP_115166.1 CDS ubiH NC_002977.6 2962532 2963737 R identified by similarity to SP:P25534; match to protein family HMM PF01360; match to protein family HMM TIGR01984; match to protein family HMM TIGR01988; 2-octaprenyl-6-methoxyphenol hydroxylase complement(2962532..2963737) Methylococcus capsulatus str. Bath 3102948 YP_115167.1 CDS pepP NC_002977.6 2963734 2965044 R identified by similarity to SP:P15034; match to protein family HMM PF00557; match to protein family HMM PF05195; xaa-pro aminopeptidase complement(2963734..2965044) Methylococcus capsulatus str. Bath 3102867 YP_115168.1 CDS MCA2771 NC_002977.6 2965052 2965588 R the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein complement(2965052..2965588) Methylococcus capsulatus str. Bath 3103189 YP_115169.1 CDS MCA2772 NC_002977.6 2965717 2966010 D identified by similarity to GP:9107127; match to protein family HMM PF05164; hypothetical protein 2965717..2966010 Methylococcus capsulatus str. Bath 3102934 YP_115170.1 CDS MCA2773 NC_002977.6 2966224 2966889 D identified by match to protein family HMM PF01812; 5-formyltetrahydrofolate cyclo-ligase 2966224..2966889 Methylococcus capsulatus str. Bath 3104263 YP_115171.1 CDS MCA2774 NC_002977.6 2966978 2967628 D identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family transcriptional regulator 2966978..2967628 Methylococcus capsulatus str. Bath 3104359 YP_115172.1 CDS MCA2776 NC_002977.6 2967920 2969062 R identified by match to protein family HMM PF00070; pyridine nucleotide-disulfide oxidoreductase complement(2967920..2969062) Methylococcus capsulatus str. Bath 3102879 YP_115173.1 CDS MCA2777 NC_002977.6 2970030 2970536 R identified by similarity to GP:17427348; hypothetical protein complement(2970030..2970536) Methylococcus capsulatus str. Bath 3103731 YP_115174.1 CDS MCA2778 NC_002977.6 2970552 2970911 R identified by similarity to GP:11193064; formaldehyde-activating domain-containing protein complement(2970552..2970911) Methylococcus capsulatus str. Bath 3104358 YP_115175.1 CDS MCA2779 NC_002977.6 2971142 2971474 D identified by similarity to GP:12024949; match to protein family HMM PF00893; multidrug resistance protein 2971142..2971474 Methylococcus capsulatus str. Bath 3103990 YP_115176.1 CDS MCA2780 NC_002977.6 2971523 2971927 R ankyrin repeat-containing protein complement(2971523..2971927) Methylococcus capsulatus str. Bath 3103902 YP_115177.1 CDS argB NC_002977.6 2972017 2972919 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(2972017..2972919) Methylococcus capsulatus str. Bath 3103803 YP_115178.1 CDS MCA2782 NC_002977.6 2972945 2974336 R identified by similarity to GP:150994; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphoglucomutase/phosphomannomutase complement(2972945..2974336) Methylococcus capsulatus str. Bath 3103315 YP_115179.1 CDS dut NC_002977.6 2975353 2975808 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(2975353..2975808) Methylococcus capsulatus str. Bath 3103113 YP_115180.1 CDS coaBC NC_002977.6 2975780 2977042 R identified by similarity to SP:P24285; match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase complement(2975780..2977042) Methylococcus capsulatus str. Bath 3104863 YP_115181.1 CDS MCA2786 NC_002977.6 2977785 2978261 D identified by match to protein family HMM PF02810; SecC motif-containing protein 2977785..2978261 Methylococcus capsulatus str. Bath 3103828 YP_115182.1 CDS MCA2787 NC_002977.6 2978374 2979591 R hypothetical protein complement(2978374..2979591) Methylococcus capsulatus str. Bath 3102944 YP_115183.1 CDS MCA2788 NC_002977.6 2979599 2980597 R identified by similarity to GP:17132042; match to protein family HMM PF00107; alcohol dehydrogenase complement(2979599..2980597) Methylococcus capsulatus str. Bath 3103104 YP_115184.1 CDS MCA2789 NC_002977.6 2980594 2981139 R identified by match to protein family HMM PF00877; NLP/P60 family protein complement(2980594..2981139) Methylococcus capsulatus str. Bath 3104000 YP_115185.1 CDS MCA2790 NC_002977.6 2981221 2982195 R identified by similarity to SP:P76291; match to protein family HMM TIGR00452; methyltransferase complement(2981221..2982195) Methylococcus capsulatus str. Bath 3102743 YP_115186.1 CDS hemF NC_002977.6 2982291 2983205 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 2982291..2983205 Methylococcus capsulatus str. Bath 3103617 YP_115187.1 CDS MCA2792 NC_002977.6 2983200 2983853 R identified by similarity to OMNI:CC3693; match to protein family HMM PF05494; hypothetical protein complement(2983200..2983853) Methylococcus capsulatus str. Bath 3104482 YP_115188.1 CDS hemB NC_002977.6 2983971 2984975 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 2983971..2984975 Methylococcus capsulatus str. Bath 3103143 YP_115189.1 CDS aroE NC_002977.6 2984972 2985811 D identified by similarity to SP:P15770; match to protein family HMM PF01488; match to protein family HMM TIGR00507; shikimate 5-dehydrogenase 2984972..2985811 Methylococcus capsulatus str. Bath 3104558 YP_115190.1 CDS MCA2795 NC_002977.6 2985865 2986209 R identified by similarity to SP:P34884; match to protein family HMM PF01187; phenylpyruvate tautomerase complement(2985865..2986209) Methylococcus capsulatus str. Bath 3103477 YP_115191.1 CDS MCA2796 NC_002977.6 2986234 2990172 R identified by match to protein family HMM PF01839; hypothetical protein complement(2986234..2990172) Methylococcus capsulatus str. Bath 3104019 YP_115192.1 CDS MCA2797 NC_002977.6 2990516 2991058 R identified by similarity to SP:P45770; match to protein family HMM PF00132; carbonic anhydrase complement(2990516..2991058) Methylococcus capsulatus str. Bath 3104413 YP_115193.1 CDS MCA2798 NC_002977.6 2991136 2991708 D identified by similarity to OMNI:SP1284; match to protein family HMM PF04011; LemA family protein 2991136..2991708 Methylococcus capsulatus str. Bath 3102415 YP_115194.1 CDS MCA2799 NC_002977.6 2991708 2992634 D identified by similarity to OMNI:NTL03PA04369; hypothetical protein 2991708..2992634 Methylococcus capsulatus str. Bath 3103779 YP_115195.1 CDS hisE NC_002977.6 2992788 2993105 R catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase complement(2992788..2993105) Methylococcus capsulatus str. Bath 3103772 YP_115196.1 CDS hisI NC_002977.6 2993109 2993495 R PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase complement(2993109..2993495) Methylococcus capsulatus str. Bath 3104226 YP_115197.1 CDS hisF NC_002977.6 2993492 2994256 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(2993492..2994256) Methylococcus capsulatus str. Bath 3103853 YP_115198.1 CDS hisA NC_002977.6 2994258 2994989 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(2994258..2994989) Methylococcus capsulatus str. Bath 3104244 YP_115199.1 CDS hisH NC_002977.6 2995027 2995680 R identified by similarity to SP:P18785; match to protein family HMM PF00117; match to protein family HMM TIGR01855; amidotransferase complement(2995027..2995680) Methylococcus capsulatus str. Bath 3104486 YP_115200.1 CDS hisB NC_002977.6 2995727 2996320 R catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase complement(2995727..2996320) Methylococcus capsulatus str. Bath 3104419 YP_115201.1 CDS MCA2806 NC_002977.6 2996416 2998098 R identified by similarity to OMNI:NTL01BH0567; match to protein family HMM PF00282; pyridoxal-dependent decarboxylase domain-containing protein complement(2996416..2998098) Methylococcus capsulatus str. Bath 3104198 YP_115202.1 CDS MCA2807 NC_002977.6 2998217 2999020 D methyltransferase 2998217..2999020 Methylococcus capsulatus str. Bath 3104034 YP_115203.1 CDS MCA2808 NC_002977.6 2999115 2999552 D identified by similarity to GP:17427115; match to protein family HMM PF00903; hypothetical protein 2999115..2999552 Methylococcus capsulatus str. Bath 3104316 YP_115204.1 CDS MCA2809 NC_002977.6 2999895 3000308 D hypothetical protein 2999895..3000308 Methylococcus capsulatus str. Bath 3104504 YP_115205.1 CDS MCA2810 NC_002977.6 3000394 3001494 D identified by match to protein family HMM PF01609; ISMca1, transposase 3000394..3001494 Methylococcus capsulatus str. Bath 3104349 YP_115206.1 CDS MCA2811 NC_002977.6 3001706 3001828 R hypothetical protein complement(3001706..3001828) Methylococcus capsulatus str. Bath 3103436 YP_115207.1 CDS MCA2812 NC_002977.6 3001909 3002322 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 3001909..3002322 Methylococcus capsulatus str. Bath 3104096 YP_115208.1 CDS MCA2813 NC_002977.6 3002387 3003739 D identified by match to protein family HMM PF00037; 4Fe-4S ferredoxin 3002387..3003739 Methylococcus capsulatus str. Bath 3104417 YP_115209.1 CDS MCA2814 NC_002977.6 3003879 3004991 D identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 3003879..3004991 Methylococcus capsulatus str. Bath 3103946 YP_115210.1 CDS MCA2815 NC_002977.6 3004988 3008041 D AcrB/AcrD/AcrF family protein 3004988..3008041 Methylococcus capsulatus str. Bath 3102983 YP_115211.1 CDS MCA2816 NC_002977.6 3008109 3009557 D identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; outer membrane efflux family protein 3008109..3009557 Methylococcus capsulatus str. Bath 3103810 YP_115212.1 CDS MCA2818 NC_002977.6 3009943 3010230 R identified by match to protein family HMM PF03658; electron transport complex, H subunit complement(3009943..3010230) Methylococcus capsulatus str. Bath 3104016 YP_115213.1 CDS MCA2819 NC_002977.6 3010242 3010928 R in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE complement(3010242..3010928) Methylococcus capsulatus str. Bath 3103949 YP_115214.1 CDS MCA2820 NC_002977.6 3010925 3011617 R identified by similarity to SP:P97054; match to protein family HMM PF04205; match to protein family HMM TIGR01947; RnfABCDGE type electron transport complex subunit G complement(3010925..3011617) Methylococcus capsulatus str. Bath 3104353 YP_115215.1 CDS MCA2821 NC_002977.6 3011626 3012705 R identified by similarity to GP:17865303; match to protein family HMM PF03116; match to protein family HMM TIGR01946; RnfABCDGE type electron transport complex subunit D complement(3011626..3012705) Methylococcus capsulatus str. Bath 3104106 YP_115216.1 CDS MCA2822 NC_002977.6 3012702 3014189 R identified by similarity to SP:P77611; match to protein family HMM PF00037; match to protein family HMM PF01512; match to protein family HMM TIGR01945; electron transport complex subunit C complement(3012702..3014189) Methylococcus capsulatus str. Bath 3104313 YP_115217.1 CDS MCA2823 NC_002977.6 3014192 3014740 R identified by similarity to SP:Q07394; match to protein family HMM PF00037; match to protein family HMM PF04060; match to protein family HMM TIGR01944; electron transport complex subunit B complement(3014192..3014740) Methylococcus capsulatus str. Bath 3103323 YP_115218.1 CDS MCA2824 NC_002977.6 3014763 3015344 R identified by similarity to SP:P76181; match to protein family HMM PF02508; match to protein family HMM TIGR01943; electron transport complex subunit A complement(3014763..3015344) Methylococcus capsulatus str. Bath 3104021 YP_115219.1 CDS MCA2825 NC_002977.6 3015634 3015828 D identified by similarity to GP:15980856; match to protein family HMM PF04384; hypothetical protein 3015634..3015828 Methylococcus capsulatus str. Bath 3104509 YP_115220.1 CDS MCA2826 NC_002977.6 3015952 3016455 D hypothetical protein 3015952..3016455 Methylococcus capsulatus str. Bath 3104498 YP_115221.1 CDS MCA2827 NC_002977.6 3016492 3017112 D identified by match to protein family HMM PF00156; phosphoribosyl transferase domain-containing protein 3016492..3017112 Methylococcus capsulatus str. Bath 3104010 YP_115222.1 CDS MCA2828 NC_002977.6 3017504 3017776 D identified by match to protein family HMM PF00313; cold shock domain-contain protein 3017504..3017776 Methylococcus capsulatus str. Bath 3104069 YP_115223.1 CDS MCA2829 NC_002977.6 3017823 3018044 D hypothetical protein 3017823..3018044 Methylococcus capsulatus str. Bath 3104079 YP_115224.1 CDS MCA2830 NC_002977.6 3018276 3019568 R identified by match to protein family HMM PF00324; amino acid permease complement(3018276..3019568) Methylococcus capsulatus str. Bath 3104503 YP_115225.1 CDS pcm-3 NC_002977.6 3019589 3020287 R identified by similarity to SP:P24206; match to protein family HMM PF01135; match to protein family HMM TIGR00080; protein-L-isoaspartate O-methyltransferase complement(3019589..3020287) Methylococcus capsulatus str. Bath 3103041 YP_115226.1 CDS MCA2832 NC_002977.6 3020535 3023942 R identified by similarity to OMNI:NTL03PA04736; match to protein family HMM PF05359; hypothetical protein complement(3020535..3023942) Methylococcus capsulatus str. Bath 3104187 YP_115227.1 CDS MCA2833 NC_002977.6 3024026 3025018 R hypothetical protein complement(3024026..3025018) Methylococcus capsulatus str. Bath 3104333 YP_115228.1 CDS MCA2834 NC_002977.6 3025157 3026122 R identified by similarity to OMNI:NTL01MT00914; hypothetical protein complement(3025157..3026122) Methylococcus capsulatus str. Bath 3103294 YP_115229.1 CDS MCA2835 NC_002977.6 3026140 3026451 R hypothetical protein complement(3026140..3026451) Methylococcus capsulatus str. Bath 3103944 YP_115230.1 CDS MCA2836 NC_002977.6 3026483 3027604 R identified by similarity to SP:P09833; match to protein family HMM PF00005; match to protein family HMM PF03459; molybdenum ABC transporter ATP-binding protein complement(3026483..3027604) Methylococcus capsulatus str. Bath 3103687 YP_115231.1 CDS MCA2837 NC_002977.6 3027619 3029190 R amine oxidase complement(3027619..3029190) Methylococcus capsulatus str. Bath 3104093 YP_115232.1 CDS MCA2838 NC_002977.6 3029398 3029958 R identified by match to protein family HMM PF01300; Sua5/YciO/YrdC/YwlC family protein complement(3029398..3029958) Methylococcus capsulatus str. Bath 3104487 YP_115233.1 CDS topA NC_002977.6 3029974 3032280 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining; maintains net negative superhelicity; DNA topoisomerase I complement(3029974..3032280) Methylococcus capsulatus str. Bath 3104042 YP_115234.1 CDS MCA2840 NC_002977.6 3032357 3032824 R identified by similarity to OMNI:NTL01XF00924; match to protein family HMM PF04361; hypothetical protein complement(3032357..3032824) Methylococcus capsulatus str. Bath 3103371 YP_115235.1 CDS MCA2841 NC_002977.6 3032860 3033954 R identified by similarity to SP:P43862; match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA processing protein DprA complement(3032860..3033954) Methylococcus capsulatus str. Bath 3104724 YP_115236.1 CDS MCA2842 NC_002977.6 3033965 3034990 R identified by similarity to GP:17427077; match to protein family HMM PF01476; LysM domain-containing protein complement(3033965..3034990) Methylococcus capsulatus str. Bath 3102637 YP_115237.1 CDS def-2 NC_002977.6 3035164 3035700 D identified by similarity to SP:P27251; match to protein family HMM PF01327; match to protein family HMM TIGR00079; polypeptide deformylase 3035164..3035700 Methylococcus capsulatus str. Bath 3104053 YP_115238.1 CDS fmt NC_002977.6 3035787 3036713 D identified by similarity to SP:P23882; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460; methionyl-tRNA formyltransferase 3035787..3036713 Methylococcus capsulatus str. Bath 3104223 YP_115239.1 CDS sun NC_002977.6 3036710 3038005 D identified by similarity to SP:P36929; match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563; sun protein 3036710..3038005 Methylococcus capsulatus str. Bath 3104289 YP_115240.1 CDS MCA2846 NC_002977.6 3038002 3038559 D identified by similarity to OMNI:NTL01NM00155; hypothetical protein 3038002..3038559 Methylococcus capsulatus str. Bath 3103027 YP_115241.1 CDS MCA2847 NC_002977.6 3038541 3040745 D identified by similarity to SP:Q04850; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229; nitrogen regulation protein NtrY 3038541..3040745 Methylococcus capsulatus str. Bath 3104522 YP_115242.1 CDS MCA2848 NC_002977.6 3040742 3042109 D identified by similarity to SP:Q04849; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199; nitrogen regulation protein NtrX 3040742..3042109 Methylococcus capsulatus str. Bath 3103345 YP_115243.1 CDS trkA NC_002977.6 3042109 3043482 D involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 3042109..3043482 Methylococcus capsulatus str. Bath 3103987 YP_115244.1 CDS MCA2850 NC_002977.6 3043485 3044072 D identified by similarity to GP:17428157; hypothetical protein 3043485..3044072 Methylococcus capsulatus str. Bath 3102728 YP_115245.1 CDS MCA2851 NC_002977.6 3044069 3044461 D identified by similarity to GP:17427305; match to protein family HMM PF00581; rhodanese domain-containing protein 3044069..3044461 Methylococcus capsulatus str. Bath 3103033 YP_115246.1 CDS typA NC_002977.6 3044672 3046492 D identified by similarity to GP:9857266; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA 3044672..3046492 Methylococcus capsulatus str. Bath 3104330 YP_115247.1 CDS pmoB2 NC_002977.6 3046666 3047910 R identified by similarity to GP:1913913; match to protein family HMM PF04744; methane monooxygenase subunit B complement(3046666..3047910) Methylococcus capsulatus str. Bath 3103835 YP_115248.1 CDS pmoA2 NC_002977.6 3048017 3048760 R identified by similarity to GP:1913912; match to protein family HMM PF02461; methane monooxygenase subunit A complement(3048017..3048760) Methylococcus capsulatus str. Bath 3104571 YP_115249.1 CDS MCA2855 NC_002977.6 3048914 3049696 R identified by match to protein family HMM PF04896; ammonia monooxygenase complement(3048914..3049696) Methylococcus capsulatus str. Bath 3103232 YP_115250.1 CDS MCA2857 NC_002977.6 3050056 3050868 R identified by similarity to SP:Q59579; match to protein family HMM PF01493; formylmethanofurane dehydrogenase subunit complement(3050056..3050868) Methylococcus capsulatus str. Bath 3103199 YP_115251.1 CDS MCA2858 NC_002977.6 3050903 3051799 R catalyzes the transfer of a formyl group from formylmethanofuran to tetrahydromethanopterin tetrahydromethanopterin; formylmethanofuran--tetrahydromethanopterin formyltransferase complement(3050903..3051799) Methylococcus capsulatus str. Bath 3103082 YP_115252.1 CDS MCA2859 NC_002977.6 3051796 3053463 R identified by similarity to GP:1890210; formylmethanofurane dehydrogenase subunit A complement(3051796..3053463) Methylococcus capsulatus str. Bath 3104348 YP_115253.1 CDS MCA2860 NC_002977.6 3053492 3054763 R identified by similarity to GP:1881465; formylmethanofuran dehydrogenase complement(3053492..3054763) Methylococcus capsulatus str. Bath 3103928 YP_115254.1 CDS MCA2861 NC_002977.6 3054953 3055996 D identified by match to protein family HMM PF00288; match to protein family HMM TIGR00144; GHMP family kinase 3054953..3055996 Methylococcus capsulatus str. Bath 3104078 YP_115255.1 CDS MCA2862 NC_002977.6 3056004 3057146 D identified by similarity to GP:3237331; hypothetical protein 3056004..3057146 Methylococcus capsulatus str. Bath 3103142 YP_115256.1 CDS MCA2863 NC_002977.6 3057182 3058177 D catalyzes the reversible formation of methenyl-H(4)methanopterin from N(5)-formyl-H(4)methanopterin; N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase 3057182..3058177 Methylococcus capsulatus str. Bath 3104346 YP_115257.1 CDS MCA2864 NC_002977.6 3058170 3059096 D identified by similarity to SP:P17116; match to protein family HMM TIGR00768; RimK family alpha-L-glutamate ligase 3058170..3059096 Methylococcus capsulatus str. Bath 3102863 YP_115258.1 CDS MCA2865 NC_002977.6 3059093 3059959 D identified by similarity to GP:11193063; match to protein family HMM PF01874; ATP:dephospho-CoA triphosphoribosyl transferase 3059093..3059959 Methylococcus capsulatus str. Bath 3103980 YP_115259.1 CDS MCA2866 NC_002977.6 3060088 3060600 D identified by similarity to GP:11193064; formaldehyde-activating protein 3060088..3060600 Methylococcus capsulatus str. Bath 3104275 YP_115260.1 CDS MCA2867 NC_002977.6 3060683 3061366 R identified by similarity to GP:11193065; match to protein family HMM PF00977; HisA/HisF family protein complement(3060683..3061366) Methylococcus capsulatus str. Bath 3102994 YP_115261.1 CDS MCA2868 NC_002977.6 3061409 3062401 D identified by similarity to GP:2621925; match to protein family HMM PF02655; hypothetical protein 3061409..3062401 Methylococcus capsulatus str. Bath 3104516 YP_115262.1 CDS MCA2869 NC_002977.6 3062391 3063452 D S-layer protein 3062391..3063452 Methylococcus capsulatus str. Bath 3103341 YP_115263.1 CDS pabB NC_002977.6 3063449 3064855 D identified by similarity to SP:P12679; match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00553; para-aminobenzoate synthase, component I 3063449..3064855 Methylococcus capsulatus str. Bath 3102789 YP_115264.1 CDS MCA2871 NC_002977.6 3064842 3065435 D identified by match to protein family HMM PF00696; amino acid kinase 3064842..3065435 Methylococcus capsulatus str. Bath 3103827 YP_115265.1 CDS MCA2872 NC_002977.6 3065450 3066799 R identified by match to protein family HMM PF01360; monooxygenase complement(3065450..3066799) Methylococcus capsulatus str. Bath 3104321 YP_115266.1 CDS MCA2873 NC_002977.6 3066796 3068808 R identified by similarity to GP:1098635; match to protein family HMM PF00432; match to protein family HMM TIGR01787; squalene cyclase complement(3066796..3068808) Methylococcus capsulatus str. Bath 3103501 YP_115267.1 CDS MCA2874 NC_002977.6 3069017 3069151 R hypothetical protein complement(3069017..3069151) Methylococcus capsulatus str. Bath 3104212 YP_115268.1 CDS MCA2875 NC_002977.6 3069160 3069429 D hypothetical protein 3069160..3069429 Methylococcus capsulatus str. Bath 3103879 YP_115269.1 CDS MCA2876 NC_002977.6 3069527 3070042 D hypothetical protein 3069527..3070042 Methylococcus capsulatus str. Bath 3103517 YP_115270.1 CDS MCA2877 NC_002977.6 3070039 3071244 D identified by similarity to OMNI:NTL01BH0675; hypothetical protein 3070039..3071244 Methylococcus capsulatus str. Bath 3103040 YP_115271.1 CDS fabA NC_002977.6 3071351 3071866 D catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 3071351..3071866 Methylococcus capsulatus str. Bath 3104099 YP_115272.1 CDS fabB NC_002977.6 3071878 3073098 D identified by similarity to SP:P14926; match to protein family HMM PF00109; match to protein family HMM PF02801; 3-oxoacyl-ACP synthase 3071878..3073098 Methylococcus capsulatus str. Bath 3103538 YP_115273.1 CDS MCA2880 NC_002977.6 3073088 3073957 D identified by similarity to GP:15980332; match to protein family HMM PF01171; hypothetical protein 3073088..3073957 Methylococcus capsulatus str. Bath 3104039 YP_115274.1 CDS MCA2881 NC_002977.6 3073962 3074675 D identified by similarity to OMNI:NTL01LM0636; hypothetical protein 3073962..3074675 Methylococcus capsulatus str. Bath 3104111 YP_115275.1 CDS MCA2882 NC_002977.6 3075233 3075421 D hypothetical protein 3075233..3075421 Methylococcus capsulatus str. Bath 3104461 YP_115276.1 CDS MCA2883 NC_002977.6 3075529 3076017 D identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; match to protein family HMM TIGR02010; Rrf2 family protein 3075529..3076017 Methylococcus capsulatus str. Bath 3103896 YP_115277.1 CDS MCA2884 NC_002977.6 3076014 3077135 D identified by similarity to SP:Q43884; match to protein family HMM PF00266; cysteine desulfurase 3076014..3077135 Methylococcus capsulatus str. Bath 3103932 YP_115278.1 CDS MCA2885 NC_002977.6 3077166 3077489 D identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; HesB/YadR/YfhF family protein 3077166..3077489 Methylococcus capsulatus str. Bath 3103546 YP_115279.1 CDS ndk NC_002977.6 3077636 3078067 D identified by similarity to SP:Q59636; match to protein family HMM PF00334; nucleoside diphosphate kinase 3077636..3078067 Methylococcus capsulatus str. Bath 3103951 YP_115280.1 CDS MCA2887 NC_002977.6 3078042 3079142 D identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048; hypothetical protein 3078042..3079142 Methylococcus capsulatus str. Bath 3104120 YP_115281.1 CDS MCA2888 NC_002977.6 3079145 3079912 D identified by similarity to GP:1162960; match to protein family HMM PF00515; type IV pilus biogenesis protein PilF 3079145..3079912 Methylococcus capsulatus str. Bath 3103697 YP_115282.1 CDS hisS NC_002977.6 3079946 3081214 D identified by similarity to SP:P04804; match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442; histidyl-tRNA synthetase 3079946..3081214 Methylococcus capsulatus str. Bath 3103527 YP_115283.1 CDS MCA2890 NC_002977.6 3081228 3081863 D identified by similarity to GP:9949974; hypothetical protein 3081228..3081863 Methylococcus capsulatus str. Bath 3102975 YP_115284.1 CDS MCA2891 NC_002977.6 3081860 3083047 D identified by similarity to OMNI:NTL03PA03800; match to protein family HMM PF01011; lipoprotein 3081860..3083047 Methylococcus capsulatus str. Bath 3103747 YP_115285.1 CDS MCA2892 NC_002977.6 3083050 3084441 D identified by similarity to SP:P77254; match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00650; GTPase 3083050..3084441 Methylococcus capsulatus str. Bath 3104264 YP_115286.1 CDS MCA2893 NC_002977.6 3084515 3085096 D identified by similarity to SP:P76181; match to protein family HMM PF02508; match to protein family HMM TIGR01943; Na(+)-translocating NADH-quinone reductase subunit E 3084515..3085096 Methylococcus capsulatus str. Bath 3104123 YP_115287.1 CDS MCA2894 NC_002977.6 3085112 3085648 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 3085112..3085648 Methylococcus capsulatus str. Bath 3103982 YP_115288.1 CDS MCA2895 NC_002977.6 3085648 3087219 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 3085648..3087219 Methylococcus capsulatus str. Bath 3104035 YP_115289.1 CDS MCA2896 NC_002977.6 3087223 3088254 D identified by similarity to SP:Q52715; match to protein family HMM PF03116; match to protein family HMM TIGR01946; RnfABCDGE type electron transport complex subunit D 3087223..3088254 Methylococcus capsulatus str. Bath 3104192 YP_115290.1 CDS MCA2897 NC_002977.6 3088371 3089009 D identified by similarity to SP:P97054; match to protein family HMM PF04205; match to protein family HMM TIGR01947; RnfABCDGE type electron transport complex subunit G 3088371..3089009 Methylococcus capsulatus str. Bath 3103119 YP_115291.1 CDS MCA2898 NC_002977.6 3089006 3089707 D in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 3089006..3089707 Methylococcus capsulatus str. Bath 3103967 YP_115292.1 CDS MCA2899 NC_002977.6 3089704 3090345 D identified by similarity to SP:P20625; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III 3089704..3090345 Methylococcus capsulatus str. Bath 3104239 YP_115293.1 CDS MCA2900 NC_002977.6 3091049 3091846 R identified by match to protein family HMM PF01555; prophage MuMc02, DNA methyltransferase complement(3091049..3091846) Methylococcus capsulatus str. Bath 3103973 YP_115294.1 CDS MCA2901 NC_002977.6 3092066 3092749 R hypothetical protein complement(3092066..3092749) Methylococcus capsulatus str. Bath 3103963 YP_115295.1 CDS MCA2902 NC_002977.6 3092749 3093702 R hypothetical protein complement(3092749..3093702) Methylococcus capsulatus str. Bath 3104027 YP_115296.1 CDS MCA2903 NC_002977.6 3093686 3093874 R hypothetical protein complement(3093686..3093874) Methylococcus capsulatus str. Bath 3104351 YP_115297.1 CDS MCA2904 NC_002977.6 3093885 3096056 R identified by similarity to OMNI:NTL01AT0449; hypothetical protein complement(3093885..3096056) Methylococcus capsulatus str. Bath 3103978 YP_115298.1 CDS MCA2905 NC_002977.6 3096072 3097382 R identified by similarity to GP:4586893; prophage MuMc02 tail fiber domain-containing protein complement(3096072..3097382) Methylococcus capsulatus str. Bath 3104268 YP_115299.1 CDS MCA2906 NC_002977.6 3097383 3097865 R hypothetical protein complement(3097383..3097865) Methylococcus capsulatus str. Bath 3104341 YP_115300.1 CDS MCA2907 NC_002977.6 3097862 3098995 R identified by similarity to GP:4586892; match to protein family HMM PF04865; prophage MuMc02, bacteriocin protein complement(3097862..3098995) Methylococcus capsulatus str. Bath 3104153 YP_115301.1 CDS MCA2908 NC_002977.6 3098992 3099378 R prophage MuMc02, baseplate assembly protein W complement(3098992..3099378) Methylococcus capsulatus str. Bath 3104500 YP_115302.1 CDS MCA2909 NC_002977.6 3099375 3100853 R hypothetical protein complement(3099375..3100853) Methylococcus capsulatus str. Bath 3102883 YP_115303.1 CDS MCA2910 NC_002977.6 3100853 3101449 R identified by match to protein family HMM PF04717; match to protein family HMM TIGR01644; prophage MuMc02, baseplate assembly protein V complement(3100853..3101449) Methylococcus capsulatus str. Bath 3104377 YP_115304.1 CDS MCA2911 NC_002977.6 3101469 3102512 R identified by similarity to OMNI:NTL01ST4206; prophage MuMc02, late control gene D protein complement(3101469..3102512) Methylococcus capsulatus str. Bath 3103981 YP_115305.1 CDS MCA2912 NC_002977.6 3102509 3102754 R identified by similarity to OMNI:NTL01ST4207; match to protein family HMM PF05489; hypothetical protein complement(3102509..3102754) Methylococcus capsulatus str. Bath 3104491 YP_115306.1 CDS MCA2913 NC_002977.6 3102751 3103320 R identified by similarity to OMNI:NTL01ST4208; hypothetical protein complement(3102751..3103320) Methylococcus capsulatus str. Bath 3104184 YP_115307.1 CDS MCA2914 NC_002977.6 3103485 3106466 R identified by match to protein family HMM TIGR01760; prophage MuMc02, TP901 family tail tape measure protein complement(3103485..3106466) Methylococcus capsulatus str. Bath 3104506 YP_115308.1 CDS MCA2916 NC_002977.6 3106837 3107142 R identified by similarity to GP:8698823; hypothetical protein complement(3106837..3107142) Methylococcus capsulatus str. Bath 3103991 YP_115309.1 CDS MCA2917 NC_002977.6 3107185 3107532 R identified by similarity to SP:P44181; hypothetical protein complement(3107185..3107532) Methylococcus capsulatus str. Bath 3104343 YP_115310.1 CDS MCA2918 NC_002977.6 3107534 3108055 R identified by match to protein family HMM PF04985; match to protein family HMM TIGR01611; prophage MuMc02, major tail tube protein complement(3107534..3108055) Methylococcus capsulatus str. Bath 3104068 YP_115311.1 CDS MCA2919 NC_002977.6 3108349 3109806 R identified by match to protein family HMM PF04984; prophage MuMc02, tail sheath protein complement(3108349..3109806) Methylococcus capsulatus str. Bath 3103039 YP_115312.1 CDS MCA2920 NC_002977.6 3109813 3110010 R identified by similarity to GP:16502713; hypothetical protein complement(3109813..3110010) Methylococcus capsulatus str. Bath 3103548 YP_115313.1 CDS MCA2921 NC_002977.6 3110007 3110543 R identified by similarity to GP:16502712; hypothetical protein complement(3110007..3110543) Methylococcus capsulatus str. Bath 3104222 YP_115314.1 CDS MCA2922 NC_002977.6 3110540 3110992 R identified by similarity to GP:16502711; hypothetical protein complement(3110540..3110992) Methylococcus capsulatus str. Bath 3104476 YP_115315.1 CDS MCA2923 NC_002977.6 3111002 3111991 R identified by similarity to GP:6723249; hypothetical protein complement(3111002..3111991) Methylococcus capsulatus str. Bath 3104416 YP_115316.1 CDS MCA2924 NC_002977.6 3112000 3112374 R identified by similarity to OMNI:NTL01RS0859; hypothetical protein complement(3112000..3112374) Methylococcus capsulatus str. Bath 3103668 YP_115317.1 CDS MCA2925 NC_002977.6 3112387 3113472 R identified by similarity to GP:16502708; hypothetical protein complement(3112387..3113472) Methylococcus capsulatus str. Bath 3104128 YP_115318.1 CDS MCA2926 NC_002977.6 3113769 3114242 R identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635; prophage MuMc02, virion morphogenesis protein complement(3113769..3114242) Methylococcus capsulatus str. Bath 3104481 YP_115319.1 CDS MCA2927 NC_002977.6 3114342 3116639 R includes an intein; identified by match to protein family HMM PF04233; match to protein family HMM TIGR01443; match to protein family HMM TIGR01641; prophage MuMc02, F protein complement(3114342..3116639) Methylococcus capsulatus str. Bath 3104385 YP_115320.1 CDS MCA2928 NC_002977.6 3116636 3117397 R hypothetical protein complement(3116636..3117397) Methylococcus capsulatus str. Bath 3104379 YP_115321.1 CDS MCA2929 NC_002977.6 3117401 3117895 R hypothetical protein complement(3117401..3117895) Methylococcus capsulatus str. Bath 3103174 YP_115322.1 CDS MCA2930 NC_002977.6 3117895 3119295 R prophage MuMc02, head decoration protein complement(3117895..3119295) Methylococcus capsulatus str. Bath 3103015 YP_115323.1 CDS MCA2931 NC_002977.6 3119479 3119847 R hypothetical protein complement(3119479..3119847) Methylococcus capsulatus str. Bath 3103868 YP_115324.1 CDS MCA2932 NC_002977.6 3119840 3121330 R identified by similarity to GP:16502705; match to protein family HMM PF06074; hypothetical protein complement(3119840..3121330) Methylococcus capsulatus str. Bath 3103510 YP_115325.1 CDS MCA2933 NC_002977.6 3121327 3122658 R identified by similarity to OMNI:DRA0094; prophage MuMc02, terminase, ATPase subunit complement(3121327..3122658) Methylococcus capsulatus str. Bath 3104109 YP_115326.1 CDS MCA2934 NC_002977.6 3122655 3123218 R identified by similarity to GP:16502703; hypothetical protein complement(3122655..3123218) Methylococcus capsulatus str. Bath 3104274 YP_115327.1 CDS MCA2935 NC_002977.6 3123218 3123514 R identified by similarity to SP:Q9T1W8; hypothetical protein complement(3123218..3123514) Methylococcus capsulatus str. Bath 3103379 YP_115328.1 CDS MCA2936 NC_002977.6 3123511 3123915 R hypothetical protein complement(3123511..3123915) Methylococcus capsulatus str. Bath 3104009 YP_115329.1 CDS MCA2937 NC_002977.6 3123887 3124162 R hypothetical protein complement(3123887..3124162) Methylococcus capsulatus str. Bath 3103995 YP_115330.1 CDS MCA2938 NC_002977.6 3124146 3124364 R hypothetical protein complement(3124146..3124364) Methylococcus capsulatus str. Bath 3102752 YP_115331.1 CDS MCA2939 NC_002977.6 3124364 3124657 R identified by similarity to GP:2315457; prophage MuMc02, lipoprotein complement(3124364..3124657) Methylococcus capsulatus str. Bath 3103812 YP_115332.1 CDS MCA2940 NC_002977.6 3124644 3125069 R identified by similarity to GP:5453372; prophage MuMc02, structural protein P5 complement(3124644..3125069) Methylococcus capsulatus str. Bath 3102956 YP_115333.1 CDS MCA2941 NC_002977.6 3125302 3125616 R hypothetical protein complement(3125302..3125616) Methylococcus capsulatus str. Bath 3103362 YP_115334.1 CDS MCA2942 NC_002977.6 3125852 3126502 R identified by match to protein family HMM PF00565; match to protein family HMM PF05901; prophage MuMc02, nuclease complement(3125852..3126502) Methylococcus capsulatus str. Bath 3104549 YP_115335.1 CDS MCA2943 NC_002977.6 3126502 3126852 R identified by similarity to SP:Q47588; prophage MuMc02, transcriptional regulator complement(3126502..3126852) Methylococcus capsulatus str. Bath 3104557 YP_115336.1 CDS MCA2944 NC_002977.6 3126845 3127453 R hypothetical protein complement(3126845..3127453) Methylococcus capsulatus str. Bath 3104411 YP_115337.1 CDS MCA2946 NC_002977.6 3127653 3128084 R identified by similarity to OMNI:NMB0985; hypothetical protein complement(3127653..3128084) Methylococcus capsulatus str. Bath 3104407 YP_115338.1 CDS hup NC_002977.6 3128090 3128377 R identified by similarity to SP:P02346; match to protein family HMM PF00216; prophage MuMc02, DNA-binding protein HU complement(3128090..3128377) Methylococcus capsulatus str. Bath 3103178 YP_115339.1 CDS gam NC_002977.6 3128411 3128908 R identified by similarity to SP:P06023; match to protein family HMM PF07352; prophage MuMc02, host-nuclease inhibitor protein complement(3128411..3128908) Methylococcus capsulatus str. Bath 3103185 YP_115340.1 CDS MCA2949 NC_002977.6 3128917 3129078 R hypothetical protein complement(3128917..3129078) Methylococcus capsulatus str. Bath 3103843 YP_115341.1 CDS MCA2950 NC_002977.6 3129075 3129308 R hypothetical protein complement(3129075..3129308) Methylococcus capsulatus str. Bath 3103814 YP_115342.1 CDS MCA2951 NC_002977.6 3129305 3129640 R hypothetical protein complement(3129305..3129640) Methylococcus capsulatus str. Bath 3103158 YP_115343.1 CDS MCA2952 NC_002977.6 3129877 3130215 R hypothetical protein complement(3129877..3130215) Methylococcus capsulatus str. Bath 3103695 YP_115344.1 CDS MCA2953 NC_002977.6 3130208 3130795 R hypothetical protein complement(3130208..3130795) Methylococcus capsulatus str. Bath 3103831 YP_115345.1 CDS MCA2954 NC_002977.6 3130795 3131466 R identified by similarity to GP:974770; prophage MuMc02, transposition protein B complement(3130795..3131466) Methylococcus capsulatus str. Bath 3104314 YP_115346.1 CDS MCA2955 NC_002977.6 3131611 3133740 R identified by match to protein family HMM PF00665; prophage MuMc02, transposase A complement(3131611..3133740) Methylococcus capsulatus str. Bath 3103824 YP_115347.1 CDS MCA2956 NC_002977.6 3134333 3134524 R hypothetical protein complement(3134333..3134524) Methylococcus capsulatus str. Bath 3103819 YP_115348.1 CDS MCA2957 NC_002977.6 3134616 3135056 R hypothetical protein complement(3134616..3135056) Methylococcus capsulatus str. Bath 3102891 YP_115349.1 CDS MCA2958 NC_002977.6 3135157 3135489 R identified by similarity to OMNI:NMB1004; hypothetical protein complement(3135157..3135489) Methylococcus capsulatus str. Bath 3104559 YP_115350.1 CDS MCA2959 NC_002977.6 3135799 3136380 D identified by match to protein family HMM PF00717; prophage MuMc02, S24 family peptidase 3135799..3136380 Methylococcus capsulatus str. Bath 3103575 YP_115351.1 CDS MCA2962 NC_002977.6 3136735 3137751 D identified by match to protein family HMM PF00165; AraC family transcriptional regulator 3136735..3137751 Methylococcus capsulatus str. Bath 3103057 YP_115352.1 CDS MCA2963 NC_002977.6 3137867 3138559 R identified by similarity to SP:P48837; hypothetical protein complement(3137867..3138559) Methylococcus capsulatus str. Bath 3104452 YP_115353.1 CDS MCA2964 NC_002977.6 3138767 3139867 R identified by match to protein family HMM PF01609; ISMca1, transposase complement(3138767..3139867) Methylococcus capsulatus str. Bath 3103821 YP_115354.1 CDS MCA2965 NC_002977.6 3140074 3141096 R identified by similarity to OMNI:NTL03PA01115; hypothetical protein complement(3140074..3141096) Methylococcus capsulatus str. Bath 3104255 YP_115355.1 CDS MCA2966 NC_002977.6 3141312 3142022 D identified by similarity to OMNI:CC1988; hypothetical protein 3141312..3142022 Methylococcus capsulatus str. Bath 3104276 YP_115356.1 CDS MCA2967 NC_002977.6 3142264 3143145 D identified by match to protein family HMM PF00892; hypothetical protein 3142264..3143145 Methylococcus capsulatus str. Bath 3104107 YP_115357.1 CDS MCA2968 NC_002977.6 3143156 3144124 D identified by match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase 3143156..3144124 Methylococcus capsulatus str. Bath 3103357 YP_115358.1 CDS MCA2969 NC_002977.6 3144153 3144755 D identified by match to protein family HMM PF01205; hypothetical protein 3144153..3144755 Methylococcus capsulatus str. Bath 3103521 YP_115359.1 CDS pgl-2 NC_002977.6 3144759 3145466 R identified by similarity to SP:P74618; match to protein family HMM TIGR01198; 6-phosphogluconolactonase complement(3144759..3145466) Methylococcus capsulatus str. Bath 3103653 YP_115360.1 CDS zwf-2 NC_002977.6 3145478 3146962 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(3145478..3146962) Methylococcus capsulatus str. Bath 3104139 YP_115361.1 CDS MCA2972 NC_002977.6 3147067 3147498 R identified by match to protein family HMM PF03330; match to protein family HMM TIGR00413; lipoprotein complement(3147067..3147498) Methylococcus capsulatus str. Bath 3103945 YP_115362.1 CDS MCA2973 NC_002977.6 3147581 3147823 D hypothetical protein 3147581..3147823 Methylococcus capsulatus str. Bath 3104020 YP_115363.1 CDS MCA2974 NC_002977.6 3147994 3150495 R identified by match to protein family HMM PF00801; PKD domain-containing protein complement(3147994..3150495) Methylococcus capsulatus str. Bath 3104384 YP_115364.1 CDS gmk NC_002977.6 3150827 3151441 D identified by similarity to SP:P24234; match to protein family HMM PF00625; guanylate kinase 3150827..3151441 Methylococcus capsulatus str. Bath 3104292 YP_115365.1 CDS MCA2976 NC_002977.6 3151442 3151996 R identified by match to protein family HMM PF00072; match to protein family HMM PF02954; match to protein family HMM TIGR01199; DNA binding response regulator complement(3151442..3151996) Methylococcus capsulatus str. Bath 3103840 YP_115366.1 CDS MCA2977 NC_002977.6 3151993 3153342 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase complement(3151993..3153342) Methylococcus capsulatus str. Bath 3104340 YP_115367.1 CDS MCA2978 NC_002977.6 3153707 3154402 R identified by similarity to OMNI:VCA0581; match to protein family HMM PF01435; lipoprotein complement(3153707..3154402) Methylococcus capsulatus str. Bath 3104585 YP_115368.1 CDS msrA NC_002977.6 3154535 3155203 R identified by similarity to SP:P27110; match to protein family HMM PF01625; match to protein family HMM TIGR00401; peptide methionine sulfoxide reductase complement(3154535..3155203) Methylococcus capsulatus str. Bath 3104553 YP_115369.1 CDS hslO NC_002977.6 3155284 3156153 D identified by similarity to SP:P45803; match to protein family HMM PF01430; chaperonin HSP33 3155284..3156153 Methylococcus capsulatus str. Bath 3104392 YP_115370.1 CDS MCA2981 NC_002977.6 3156530 3157561 D hypothetical protein 3156530..3157561 Methylococcus capsulatus str. Bath 3104098 YP_115371.1 CDS MCA2982 NC_002977.6 3157628 3158281 R identified by similarity to OMNI:NTL03PA05178; match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD superfamily hydrolase complement(3157628..3158281) Methylococcus capsulatus str. Bath 3104247 YP_115372.1 CDS cysQ NC_002977.6 3158347 3159165 D identified by similarity to SP:P22255; match to protein family HMM PF00459; match to protein family HMM TIGR01331; 3'(2'),5'-bisphosphate nucleotidase 3158347..3159165 Methylococcus capsulatus str. Bath 3103901 YP_115373.1 CDS MCA2984 NC_002977.6 3159162 3160226 R identified by similarity to OMNI:VC2487; match to protein family HMM TIGR00661; hypothetical protein complement(3159162..3160226) Methylococcus capsulatus str. Bath 3103425 YP_115374.1 CDS MCA2985 NC_002977.6 3160223 3160750 R identified by match to protein family HMM PF01569; PAP2 superfamily protein complement(3160223..3160750) Methylococcus capsulatus str. Bath 3102941 YP_115375.1 CDS MCA2986 NC_002977.6 3160832 3161587 D Involved in pteridine salvage and antifolate resistance; pteridine reductase 3160832..3161587 Methylococcus capsulatus str. Bath 3102963 YP_115376.1 CDS folK-2 NC_002977.6 3161584 3162078 R identified by similarity to OMNI:NTL01EC00142; match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(3161584..3162078) Methylococcus capsulatus str. Bath 3103559 YP_115377.1 CDS folB NC_002977.6 3162071 3162436 R identified by similarity to SP:P31055; match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526; dihydroneopterin aldolase complement(3162071..3162436) Methylococcus capsulatus str. Bath 3103848 YP_115378.1 CDS MCA2989 NC_002977.6 3162516 3163112 D identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023; hypothetical protein 3162516..3163112 Methylococcus capsulatus str. Bath 3104507 YP_115379.1 CDS gcp NC_002977.6 3163099 3164112 R identified by similarity to SP:P36175; match to protein family HMM PF00814; match to protein family HMM TIGR00329; O-sialoglycoprotein endopeptidase complement(3163099..3164112) Methylococcus capsulatus str. Bath 3104269 YP_115380.1 CDS rpsU NC_002977.6 3164223 3164456 D identified by similarity to SP:P02379; match to protein family HMM PF01165; match to protein family HMM TIGR00030; 30S ribosomal protein S21 3164223..3164456 Methylococcus capsulatus str. Bath 3103128 YP_115381.1 CDS MCA2992 NC_002977.6 3164481 3164939 D identified by match to protein family HMM PF02637; GatB/Yqey domain-containing protein 3164481..3164939 Methylococcus capsulatus str. Bath 3104356 YP_115382.1 CDS dnaG NC_002977.6 3164997 3166712 D identified by similarity to SP:P02923; match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391; DNA primase 3164997..3166712 Methylococcus capsulatus str. Bath 3104564 YP_115383.1 CDS rpoD NC_002977.6 3166790 3168589 D identified by similarity to SP:P00579; match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF04546; RNA polymerase sigma-70 factor 3166790..3168589 Methylococcus capsulatus str. Bath 3103408 YP_115384.1 CDS ispB NC_002977.6 3169214 3170236 R identified by similarity to SP:P19641; match to protein family HMM PF00348; octaprenyl-diphosphate synthase complement(3169214..3170236) Methylococcus capsulatus str. Bath 3103140 YP_115385.1 CDS MCA2997 NC_002977.6 3170363 3171721 R identified by match to protein family HMM PF00155; aminotransferase complement(3170363..3171721) Methylococcus capsulatus str. Bath 3103962 YP_115386.1 CDS MCA2998 NC_002977.6 3171966 3172334 D hypothetical protein 3171966..3172334 Methylococcus capsulatus str. Bath 3104007 YP_115387.1 CDS thiE NC_002977.6 3172903 3173577 D identified by similarity to SP:P39594; match to protein family HMM PF02581; match to protein family HMM TIGR00693; thiamine-phosphate pyrophosphorylase 3172903..3173577 Methylococcus capsulatus str. Bath 3103993 YP_115388.1 CDS aceE NC_002977.6 3173672 3176359 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 3173672..3176359 Methylococcus capsulatus str. Bath 3104517 YP_115389.1 CDS aceF NC_002977.6 3176376 3177686 D identified by similarity to SP:P06959; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; branched-chain alpha-keto acid dehydrogenase E2 subunit 3176376..3177686 Methylococcus capsulatus str. Bath 3103554 YP_115390.1 CDS lpdA NC_002977.6 3177706 3179127 D identified by similarity to SP:P00391; match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM TIGR01350; pyruvate dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase 3177706..3179127 Methylococcus capsulatus str. Bath 3103740 YP_115391.1 CDS MCA3003 NC_002977.6 3179433 3180263 D identified by match to protein family HMM PF01209; UbiE/COQ5 family methlytransferase 3179433..3180263 Methylococcus capsulatus str. Bath 3104086 YP_115392.1 CDS MCA3004 NC_002977.6 3180778 3182460 R identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852; pyridine nucleotide-disulfide oxidoreductase complement(3180778..3182460) Methylococcus capsulatus str. Bath 3104134 YP_115393.1 CDS MCA3005 NC_002977.6 3182749 3186387 D identified by similarity to OMNI:NTL01SM00503; match to protein family HMM PF00176; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; DEAD/DEAH box helicase 3182749..3186387 Methylococcus capsulatus str. Bath 3104345 YP_115394.1 CDS MCA3006 NC_002977.6 3186430 3186660 D identified by match to protein family HMM TIGR01439; AbrB family transcriptional regulator 3186430..3186660 Methylococcus capsulatus str. Bath 3103693 YP_115395.1 CDS MCA3007 NC_002977.6 3186650 3186994 D identified by similarity to OMNI:NTL01SS00950; hypothetical protein 3186650..3186994 Methylococcus capsulatus str. Bath 3104163 YP_115396.1 CDS MCA3008 NC_002977.6 3186991 3190029 D identified by similarity to OMNI:NTL01SM00500; match to protein family HMM PF06634; hypothetical protein 3186991..3190029 Methylococcus capsulatus str. Bath 3103540 YP_115397.1 CDS MCA3009 NC_002977.6 3190040 3192835 D identified by match to protein family HMM PF02231; phosphotransferase domain-containing protein 3190040..3192835 Methylococcus capsulatus str. Bath 3103847 YP_115398.1 CDS MCA3010 NC_002977.6 3192837 3194108 D identified by similarity to GP:19916313; match to protein family HMM PF04326; hypothetical protein 3192837..3194108 Methylococcus capsulatus str. Bath 3104552 YP_115399.1 CDS MCA3011 NC_002977.6 3194105 3196933 D identified by similarity to OMNI:NTL01SM00499; hypothetical protein 3194105..3196933 Methylococcus capsulatus str. Bath 3103884 YP_115400.1 CDS MCA3012 NC_002977.6 3196930 3197874 D identified by similarity to GP:5738269; hypothetical protein 3196930..3197874 Methylococcus capsulatus str. Bath 3103522 YP_115401.1 CDS MCA3014 NC_002977.6 3198130 3198426 R identified by similarity to GP:17427894; hypothetical protein complement(3198130..3198426) Methylococcus capsulatus str. Bath 3104497 YP_115402.1 CDS MCA3015 NC_002977.6 3199279 3200469 R identified by similarity to SP:Q44091; oxidoreductase complement(3199279..3200469) Methylococcus capsulatus str. Bath 3103877 YP_115403.1 CDS MCA3016 NC_002977.6 3200560 3201087 D identified by similarity to OMNI:VCA0641; match to protein family HMM PF04143; hypothetical protein 3200560..3201087 Methylococcus capsulatus str. Bath 3104025 YP_115404.1 CDS MCA3017 NC_002977.6 3201094 3201579 D identified by similarity to GP:17427447; hypothetical protein 3201094..3201579 Methylococcus capsulatus str. Bath 3104446 YP_115405.1 CDS MCA3018 NC_002977.6 3201649 3202554 R identified by similarity to SP:P55818; methylene tetrahydromethanopterin dehydrogenase/methylenetetrahydrofolate dehydrogenase complement(3201649..3202554) Methylococcus capsulatus str. Bath 3103912 YP_115406.1 CDS MCA3019 NC_002977.6 3202646 3203527 R identified by similarity to SP:P55818; methylene tetrahydromethanopterin dehydrogenase/methylenetetrahydrofolate dehydrogenase complement(3202646..3203527) Methylococcus capsulatus str. Bath 3103356 YP_115407.1 CDS ppdK NC_002977.6 3203673 3206393 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase complement(3203673..3206393) Methylococcus capsulatus str. Bath 3103073 YP_115408.1 CDS atpC-2 NC_002977.6 3206445 3206894 R identified by similarity to SP:P00832; match to protein family HMM PF00401; match to protein family HMM PF02823; match to protein family HMM TIGR01216; ATP synthase F1 subunit epsilon complement(3206445..3206894) Methylococcus capsulatus str. Bath 3102870 YP_115409.1 CDS MCA3022 NC_002977.6 3206903 3207733 R hypothetical protein complement(3206903..3207733) Methylococcus capsulatus str. Bath 3104304 YP_115410.1 CDS MCA3023 NC_002977.6 3207754 3208359 R identified by similarity to GP:16504180; match to protein family HMM PF01725; match to protein family HMM TIGR00042; Ham1 protein complement(3207754..3208359) Methylococcus capsulatus str. Bath 3104577 YP_115411.1 CDS rph NC_002977.6 3208367 3209098 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(3208367..3209098) Methylococcus capsulatus str. Bath 3103933 YP_115412.1 CDS acyII NC_002977.6 3209172 3211532 D identified by similarity to SP:P15558; match to protein family HMM PF01804; penicillin acylase II 3209172..3211532 Methylococcus capsulatus str. Bath 3102668 YP_115413.1 CDS MCA3026 NC_002977.6 3211616 3212485 D identified by similarity to OMNI:NTL03PA05336; match to protein family HMM PF03755; match to protein family HMM TIGR00255; hypothetical protein 3211616..3212485 Methylococcus capsulatus str. Bath 3104433 YP_115414.1 CDS MCA3027 NC_002977.6 3212514 3213509 R identified by match to protein family HMM PF00165; match to protein family HMM TIGR01199; AraC family transcriptional regulator complement(3212514..3213509) Methylococcus capsulatus str. Bath 3103947 YP_115415.1 CDS MCA3028 NC_002977.6 3213738 3214364 D hypothetical protein 3213738..3214364 Methylococcus capsulatus str. Bath 3103744 YP_115416.1 CDS MCA3029 NC_002977.6 3214477 3214917 D hypothetical protein 3214477..3214917 Methylococcus capsulatus str. Bath 3103823 YP_115417.1 CDS gyrB NC_002977.6 3214959 3217373 R identified by similarity to SP:P06982; match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059; DNA gyrase subunit B complement(3214959..3217373) Methylococcus capsulatus str. Bath 3104378 YP_115418.1 CDS recF NC_002977.6 3217515 3218594 R identified by similarity to SP:P24900; match to protein family HMM PF02463; match to protein family HMM TIGR00611; DNA replication and repair protein RecF complement(3217515..3218594) Methylococcus capsulatus str. Bath 3103806 YP_115419.1 CDS dnaN NC_002977.6 3218647 3219747 R identified by match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663; DNA polymerase III subunit beta complement(3218647..3219747) Methylococcus capsulatus str. Bath 3103618 YP_115420.1 CDS dnaA NC_002977.6 3219779 3221107 R identified by similarity to SP:P35891; match to protein family HMM PF00308; match to protein family HMM TIGR00362; chromosomal replication initiator protein DnaA complement(3219779..3221107) Methylococcus capsulatus str. Bath 3104580 YP_115421.1 CDS rpmH NC_002977.6 3221271 3221405 D identified by similarity to SP:P02437; match to protein family HMM PF00468; match to protein family HMM TIGR01030; 50S ribosomal protein L34 3221271..3221405 Methylococcus capsulatus str. Bath 3104095 YP_115422.1 CDS rnpA NC_002977.6 3221405 3221791 D identified by similarity to SP:P06277; match to protein family HMM PF00825; match to protein family HMM TIGR00188; ribonuclease P protein component 3221405..3221791 Methylococcus capsulatus str. Bath 3103720 YP_115423.1 CDS MCA3036 NC_002977.6 3221767 3221994 D identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein 3221767..3221994 Methylococcus capsulatus str. Bath 3104369 YP_115424.1 CDS MCA3037 NC_002977.6 3221994 3223631 D identified by similarity to SP:P25754; match to protein family HMM PF02096; inner membrane protein 3221994..3223631 Methylococcus capsulatus str. Bath 3103721 YP_115425.1 CDS trmE NC_002977.6 3223645 3224991 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 3223645..3224991 Methylococcus capsulatus str. Bath 3103934 YP_115426.1 CDS MCA3039 NC_002977.6 3225001 3225957 R identified by similarity to SP:P25544; match to protein family HMM PF00126; match to protein family HMM PF03466; rubisco operon transcriptional regulator complement(3225001..3225957) Methylococcus capsulatus str. Bath 3104147 YP_115427.1 CDS tkt-1 NC_002977.6 3226183 3228195 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 3226183..3228195 Methylococcus capsulatus str. Bath 3104505 YP_115428.1 CDS fbaA-1 NC_002977.6 3228215 3229279 D class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 3228215..3229279 Methylococcus capsulatus str. Bath 3103532 YP_115429.1 CDS MCA3042 NC_002977.6 3229431 3230117 D hypothetical protein 3229431..3230117 Methylococcus capsulatus str. Bath 3104567 YP_115430.1 CDS MCA3043 NC_002977.6 3230263 3230910 D identified by similarity to GP:6899861; match to protein family HMM PF00215; hexulose-6-phosphate synthase 3230263..3230910 Methylococcus capsulatus str. Bath 3103203 YP_115431.1 CDS MCA3044 NC_002977.6 3230923 3231456 D identified by match to protein family HMM PF01380; SIS domain-containing protein 3230923..3231456 Methylococcus capsulatus str. Bath 3103621 YP_115432.1 CDS tal NC_002977.6 3231722 3232711 D Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B 3231722..3232711 Methylococcus capsulatus str. Bath 3104299 YP_115433.1 CDS tkt-2 NC_002977.6 3232865 3234877 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 3232865..3234877 Methylococcus capsulatus str. Bath 3103547 YP_115434.1 CDS fbaA-2 NC_002977.6 3234897 3235961 D class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 3234897..3235961 Methylococcus capsulatus str. Bath 3103230 YP_115435.1 CDS MCA3048 NC_002977.6 3236113 3236799 D hypothetical protein 3236113..3236799 Methylococcus capsulatus str. Bath 3104336 YP_115436.1 CDS MCA3049 NC_002977.6 3236945 3237592 D identified by similarity to GP:6899861; match to protein family HMM PF00215; hexulose-6-phosphate synthase 3236945..3237592 Methylococcus capsulatus str. Bath 3102606 YP_115437.1 CDS MCA3050 NC_002977.6 3237605 3238138 D identified by match to protein family HMM PF01380; SIS domain-containing protein 3237605..3238138 Methylococcus capsulatus str. Bath 3103070 YP_115438.1 CDS cbbP NC_002977.6 3238358 3239236 D identified by similarity to SP:P23015; match to protein family HMM PF00485; phosphoribulokinase 3238358..3239236 Methylococcus capsulatus str. Bath 3104189 YP_115439.1 CDS ampD NC_002977.6 3239184 3239831 R identified by similarity to GP:14625828; match to protein family HMM PF01510; N-acetyl-anhydromuranmyl-L-alanine amidase complement(3239184..3239831) Methylococcus capsulatus str. Bath 3104162 YP_115440.1 CDS MCA3053 NC_002977.6 3239982 3242180 D identified by similarity to OMNI:NTL03PA04524; hypothetical protein 3239982..3242180 Methylococcus capsulatus str. Bath 3103791 YP_115441.1 CDS moaD NC_002977.6 3242212 3242445 D identified by similarity to SP:P30748; match to protein family HMM PF02597; match to protein family HMM TIGR01682; match to protein family HMM TIGR01687; molybdopterin converting factor subunit 1 3242212..3242445 Methylococcus capsulatus str. Bath 3103784 YP_115442.1 CDS moaE NC_002977.6 3242447 3242902 D identified by similarity to SP:P30749; match to protein family HMM PF02391; molybdopterin converting factor subunit 2 3242447..3242902 Methylococcus capsulatus str. Bath 3104420 YP_115443.1 CDS MCA3056 NC_002977.6 3242915 3243259 D identified by similarity to OMNI:NTL03PA01076; hypothetical protein 3242915..3243259 Methylococcus capsulatus str. Bath 3103878 YP_115444.1 CDS MCA3057 NC_002977.6 3243256 3244089 D identified by similarity to SP:P76146; match to protein family HMM PF05249; hypothetical protein 3243256..3244089 Methylococcus capsulatus str. Bath 3104488 YP_115445.1 CDS MCA3058 NC_002977.6 3244196 3244405 D identified by similarity to GP:17431649; match to protein family HMM PF07311; hypothetical protein 3244196..3244405 Methylococcus capsulatus str. Bath 3103482 YP_115446.1 CDS dsbB NC_002977.6 3244437 3244931 D identified by similarity to SP:P30018; match to protein family HMM PF02600; disulfide bond formation protein B 3244437..3244931 Methylococcus capsulatus str. Bath 3104048 YP_115447.1 CDS hemC NC_002977.6 3244910 3245965 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 3244910..3245965 Methylococcus capsulatus str. Bath 3103942 YP_115448.1 CDS hemDX NC_002977.6 3245998 3248016 D catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane and the formation of precorrin-2 from uroporphyrin III and S-adenosyl-L-methionine by two sequential methylation reactions; functions in tetrapyrrole and heme biosynthesis; bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase 3245998..3248016 Methylococcus capsulatus str. Bath 3103622 YP_115449.1 CDS MCA3062 NC_002977.6 3248013 3249287 D identified by similarity to SP:P09128; match to protein family HMM PF07219; hemY protein 3248013..3249287 Methylococcus capsulatus str. Bath 3103948 YP_115450.1 CDS MCA3063 NC_002977.6 3249296 3250792 R identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148; hypothetical protein complement(3249296..3250792) Methylococcus capsulatus str. Bath 3103564 YP_115451.1 CDS MCA3064 NC_002977.6 3250822 3251160 R hypothetical protein complement(3250822..3251160) Methylococcus capsulatus str. Bath 3102899 YP_115452.1 CDS MCA3065 NC_002977.6 3251253 3251903 D identified by similarity to SP:Q05197; phosphatidylethanolamine N-methyltransferase 3251253..3251903 Methylococcus capsulatus str. Bath 3103781 YP_115453.1 CDS minC NC_002977.6 3251984 3252706 D identified by similarity to SP:P18196; match to protein family HMM PF03775; match to protein family HMM PF05209; match to protein family HMM TIGR01222; septum site-determining protein MinC 3251984..3252706 Methylococcus capsulatus str. Bath 3104001 YP_115454.1 CDS minD NC_002977.6 3252738 3253547 D identified by similarity to SP:P18197; match to protein family HMM PF01656; match to protein family HMM TIGR01968; septum site-determining protein MinD 3252738..3253547 Methylococcus capsulatus str. Bath 3103188 YP_115455.1 CDS minE NC_002977.6 3253552 3253833 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 3253552..3253833 Methylococcus capsulatus str. Bath 3104262 YP_115456.1 CDS MCA3069 NC_002977.6 3253876 3254091 D hypothetical protein 3253876..3254091 Methylococcus capsulatus str. Bath 3103887 YP_115457.1 CDS xth-2 NC_002977.6 3254189 3254959 D identified by similarity to SP:P09030; match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III 3254189..3254959 Methylococcus capsulatus str. Bath 3103786 YP_115458.1 CDS MCA3071 NC_002977.6 3255041 3256063 D identified by similarity to GP:15023878; match to protein family HMM PF00180; NAD-dependent isocitrate dehydrogenase 3255041..3256063 Methylococcus capsulatus str. Bath 3104551 YP_115459.1 CDS mutM NC_002977.6 3256070 3256885 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(3256070..3256885) Methylococcus capsulatus str. Bath 3104090 YP_115460.1 CDS MCA3073 NC_002977.6 3256892 3258085 R hypothetical protein complement(3256892..3258085) Methylococcus capsulatus str. Bath 3103916 YP_115461.1 CDS MCA3074 NC_002977.6 3258088 3259635 R identified by similarity to GP:1245347; match to protein family HMM PF03062; alginate O-acetyltransferase complement(3258088..3259635) Methylococcus capsulatus str. Bath 3103396 YP_115462.1 CDS MCA3075 NC_002977.6 3259727 3260656 R hypothetical protein complement(3259727..3260656) Methylococcus capsulatus str. Bath 3103966 YP_115463.1 CDS MCA3076 NC_002977.6 3260739 3262061 R identified by similarity to GP:17135441; hypothetical protein complement(3260739..3262061) Methylococcus capsulatus str. Bath 3103399 YP_115464.1 CDS MCA3077 NC_002977.6 3262133 3262888 R identified by similarity to GP:17135440; similarity to OMNI:NT01MC2877; ABC transporter permease complement(3262133..3262888) Methylococcus capsulatus str. Bath 3102898 YP_115465.1 CDS MCA3078 NC_002977.6 3262885 3263829 R identified by similarity to OMNI:NTL01SS02600; match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(3262885..3263829) Methylococcus capsulatus str. Bath 3104325 YP_115466.1 CDS MCA3079 NC_002977.6 3263893 3265035 D identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00539; oxygen-independent coproporphyrinogen III oxidase 3263893..3265035 Methylococcus capsulatus str. Bath 3104324 YP_115467.1 CDS MCA3080 NC_002977.6 3265053 3265397 R identified by similarity to GP:17131839; match to protein family HMM PF04020; hypothetical protein complement(3265053..3265397) Methylococcus capsulatus str. Bath 3102858 YP_115468.1 CDS MCA3081 NC_002977.6 3265423 3267555 R identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein/response regulator complement(3265423..3267555) Methylococcus capsulatus str. Bath 3103699 YP_115469.1 CDS MCA3082 NC_002977.6 3267616 3267786 R hypothetical protein complement(3267616..3267786) Methylococcus capsulatus str. Bath 3104175 YP_115470.1 CDS MCA3083 NC_002977.6 3268038 3269219 D identified by similarity to OMNI:NTL03PA03071; match to protein family HMM PF01882; hypothetical protein 3268038..3269219 Methylococcus capsulatus str. Bath 3104401 YP_115471.1 CDS MCA3084 NC_002977.6 3269224 3269700 D identified by similarity to OMNI:VCA0173; hypothetical protein 3269224..3269700 Methylococcus capsulatus str. Bath 3103067 YP_115472.1 CDS MCA3085 NC_002977.6 3269712 3270698 D identified by similarity to GP:4838139; match to protein family HMM PF00092; batB protein 3269712..3270698 Methylococcus capsulatus str. Bath 3103167 YP_115473.1 CDS MCA3086 NC_002977.6 3270749 3272488 D identified by match to protein family HMM PF00515; hypothetical protein 3270749..3272488 Methylococcus capsulatus str. Bath 3103624 YP_115474.1 CDS MCA3087 NC_002977.6 3272491 3274278 D identified by similarity to OMNI:NTL03PA03075; hypothetical protein 3272491..3274278 Methylococcus capsulatus str. Bath 3104267 YP_115475.1 CDS MCA3088 NC_002977.6 3274233 3274433 R hypothetical protein complement(3274233..3274433) Methylococcus capsulatus str. Bath 3103192 YP_115476.1 CDS argS NC_002977.6 3274549 3276309 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 3274549..3276309 Methylococcus capsulatus str. Bath 3104342 YP_115477.1 CDS MCA3090 NC_002977.6 3276312 3276953 D identified by similarity to OMNI:NTL03PA05053; match to protein family HMM PF05036; hypothetical protein 3276312..3276953 Methylococcus capsulatus str. Bath 3104040 YP_115478.1 CDS MCA3091 NC_002977.6 3276960 3278324 R identified by similarity to OMNI:VC0899; match to protein family HMM PF03641; decarboxylase complement(3276960..3278324) Methylococcus capsulatus str. Bath 3104015 YP_115479.1 CDS ung NC_002977.6 3278549 3279103 R identified by similarity to GP:21464612; match to protein family HMM PF03167; uracil-DNA glycosylase complement(3278549..3279103) Methylococcus capsulatus str. Bath 3104550 YP_115480.1 CDS MCA3093 NC_002977.6 3279169 3281208 R necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH complement(3279169..3281208) Methylococcus capsulatus str. Bath 3103861 YP_115481.1 CDS MCA3094 NC_002977.6 3281224 3281703 R hypothetical protein complement(3281224..3281703) Methylococcus capsulatus str. Bath 3102917 YP_115482.1 CDS mdoG NC_002977.6 3281700 3283196 R involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G complement(3281700..3283196) Methylococcus capsulatus str. Bath 3104394 YP_115483.1 CDS MCA3096 NC_002977.6 3283518 3284018 D identified by match to protein family HMM PF00300; phosphoglycerate mutase 3283518..3284018 Methylococcus capsulatus str. Bath 3103569 YP_115484.1 CDS MCA3097 NC_002977.6 3284032 3284406 R identified by similarity to OMNI:VC2455; hypothetical protein complement(3284032..3284406) Methylococcus capsulatus str. Bath 3104593 YP_115485.1 CDS MCA3098 NC_002977.6 3284484 3285398 R hypothetical protein complement(3284484..3285398) Methylococcus capsulatus str. Bath 3102470 YP_115486.1 CDS MCA3099 NC_002977.6 3285612 3287387 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 3285612..3287387 Methylococcus capsulatus str. Bath 3102685 YP_115487.1 CDS MCA3100 NC_002977.6 3287384 3287752 D identified by match to protein family HMM PF00072; response regulator 3287384..3287752 Methylococcus capsulatus str. Bath 3103042 YP_115488.1 CDS nadC NC_002977.6 3287761 3288603 R identified by similarity to SP:P30819; match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; nicotinate-nucleotide pyrophosphorylase complement(3287761..3288603) Methylococcus capsulatus str. Bath 3103043 YP_115489.1 CDS MCA3102 NC_002977.6 3288608 3289759 R identified by similarity to SP:P39665; phosphate binding protein complement(3288608..3289759) Methylococcus capsulatus str. Bath 3102733 YP_115490.1 CDS mopB NC_002977.6 3289936 3290982 R identified by similarity to GP:4104020; match to protein family HMM PF00691; match to protein family HMM PF02412; outer membrane protein MopB complement(3289936..3290982) Methylococcus capsulatus str. Bath 3102069 YP_115491.1 CDS phoR NC_002977.6 3291180 3292496 R identified by similarity to SP:P08400; match to protein family HMM PF00512; match to protein family HMM PF02518; histidine protein kinase PhoR complement(3291180..3292496) Methylococcus capsulatus str. Bath 3103886 YP_115492.1 CDS phoB NC_002977.6 3292500 3293198 R identified by similarity to SP:P08402; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR02154; DNA-binding response regulator PhoB complement(3292500..3293198) Methylococcus capsulatus str. Bath 3104920 YP_115493.1 CDS clpB NC_002977.6 3293305 3295884 R identified by similarity to SP:P03815; match to protein family HMM PF00004; match to protein family HMM PF02861; ATP-dependent Clp protease, ATP-binding subunit ClpB complement(3293305..3295884) Methylococcus capsulatus str. Bath 3104949 YP_115494.1 CDS MCA3107 NC_002977.6 3296120 3296443 D identified by similarity to OMNI:NTL03PA03284; hypothetical protein 3296120..3296443 Methylococcus capsulatus str. Bath 3104131 YP_115495.1 CDS MCA3108 NC_002977.6 3296470 3297321 D identified by similarity to OMNI:NTL03PA04106; match to protein family HMM PF05114; hypothetical protein 3296470..3297321 Methylococcus capsulatus str. Bath 3104866 YP_115496.1 CDS MCA3109 NC_002977.6 3297314 3298072 D identified by similarity to OMNI:NTL03PA03282; hypothetical protein 3297314..3298072 Methylococcus capsulatus str. Bath 3102283 YP_115497.1 CDS MCA3110 NC_002977.6 3298079 3301144 R identified by similarity to OMNI:NTL03PA04736; match to protein family HMM PF05359; hypothetical protein complement(3298079..3301144) Methylococcus capsulatus str. Bath 3103352 YP_115498.1 CDS MCA3111 NC_002977.6 3301356 3301799 R identified by similarity to OMNI:NTL01SM02805; hypothetical protein complement(3301356..3301799) Methylococcus capsulatus str. Bath 3103303 YP_115499.1 CDS MCA3112 NC_002977.6 3301796 3302725 R identified by similarity to GP:9971722; match to protein family HMM PF01145; hypothetical protein complement(3301796..3302725) Methylococcus capsulatus str. Bath 3102113 YP_115500.1 CDS MCA3113 NC_002977.6 3303049 3304521 D identified by similarity to OMNI:NTL03PA03455; match to protein family HMM PF03976; hypothetical protein 3303049..3304521 Methylococcus capsulatus str. Bath 3105028 MCA_tRNA-Arg-1 tRNA MCA_tRNA-Arg-1 NC_002977.6 200374 200450 D tRNA-Arg 200374..200450 Methylococcus capsulatus str. Bath 3102995 MCA_tRNA-Ser-1 tRNA MCA_tRNA-Ser-1 NC_002977.6 279347 279439 R tRNA-Ser complement(279347..279439) Methylococcus capsulatus str. Bath 3102624 MCA_tRNA-Ser-2 tRNA MCA_tRNA-Ser-2 NC_002977.6 397706 397798 D tRNA-Ser 397706..397798 Methylococcus capsulatus str. Bath 3104677 MCA_tRNA-Lys-1 tRNA MCA_tRNA-Lys-1 NC_002977.6 520023 520098 R tRNA-Lys complement(520023..520098) Methylococcus capsulatus str. Bath 3104901 MCA_tRNA-His-1 tRNA MCA_tRNA-His-1 NC_002977.6 520111 520186 R tRNA-His complement(520111..520186) Methylococcus capsulatus str. Bath 3104720 MCA_tRNA-Arg-2 tRNA MCA_tRNA-Arg-2 NC_002977.6 520196 520272 R tRNA-Arg complement(520196..520272) Methylococcus capsulatus str. Bath 3104408 MCA_tRNA-Pro-1 tRNA MCA_tRNA-Pro-1 NC_002977.6 520279 520355 R tRNA-Pro complement(520279..520355) Methylococcus capsulatus str. Bath 3105012 MCA_tRNA-Leu-1 tRNA MCA_tRNA-Leu-1 NC_002977.6 542169 542253 D tRNA-Leu 542169..542253 Methylococcus capsulatus str. Bath 3104739 MCA_tRNA-Val-1 tRNA MCA_tRNA-Val-1 NC_002977.6 548717 548792 D tRNA-Val 548717..548792 Methylococcus capsulatus str. Bath 3102204 MCA_tRNA-Asp-1 tRNA MCA_tRNA-Asp-1 NC_002977.6 548809 548885 D tRNA-Asp 548809..548885 Methylococcus capsulatus str. Bath 3104687 MCA_tRNA-Thr-1 tRNA MCA_tRNA-Thr-1 NC_002977.6 608463 608538 D tRNA-Thr 608463..608538 Methylococcus capsulatus str. Bath 3102100 MCA_tRNA-Leu-2 tRNA MCA_tRNA-Leu-2 NC_002977.6 674701 674787 D tRNA-Leu 674701..674787 Methylococcus capsulatus str. Bath 3104875 MCA_tRNA-Leu-3 tRNA MCA_tRNA-Leu-3 NC_002977.6 709014 709098 D tRNA-Leu 709014..709098 Methylococcus capsulatus str. Bath 3104802 MCA_tRNA-Val-2 tRNA MCA_tRNA-Val-2 NC_002977.6 729050 729126 D tRNA-Val 729050..729126 Methylococcus capsulatus str. Bath 3103688 MCA_tRNA-Ser-3 tRNA MCA_tRNA-Ser-3 NC_002977.6 760778 760865 D tRNA-Ser 760778..760865 Methylococcus capsulatus str. Bath 3104390 MCA_tRNA-Ile-1 tRNA MCA_tRNA-Ile-1 NC_002977.6 789802 789878 D tRNA-Ile 789802..789878 Methylococcus capsulatus str. Bath 3104725 MCA_tRNA-Ala-1 tRNA MCA_tRNA-Ala-1 NC_002977.6 789888 789963 D tRNA-Ala 789888..789963 Methylococcus capsulatus str. Bath 3104391 MCA_tRNA-Gln-1 tRNA MCA_tRNA-Gln-1 NC_002977.6 950482 950555 D tRNA-Gln 950482..950555 Methylococcus capsulatus str. Bath 3104694 MCA_tRNA-Gln-2 tRNA MCA_tRNA-Gln-2 NC_002977.6 1107052 1107126 D tRNA-Gln 1107052..1107126 Methylococcus capsulatus str. Bath 3102603 MCA_tRNA-Tyr-1 tRNA MCA_tRNA-Tyr-1 NC_002977.6 1109428 1109512 D tRNA-Tyr 1109428..1109512 Methylococcus capsulatus str. Bath 3103730 MCA_tRNA-Gly-1 tRNA MCA_tRNA-Gly-1 NC_002977.6 1109530 1109603 D tRNA-Gly 1109530..1109603 Methylococcus capsulatus str. Bath 3104703 MCA_tRNA-Thr-2 tRNA MCA_tRNA-Thr-2 NC_002977.6 1109634 1109709 D tRNA-Thr 1109634..1109709 Methylococcus capsulatus str. Bath 3102061 MCA_tRNA-Trp-1 tRNA MCA_tRNA-Trp-1 NC_002977.6 1111007 1111082 D tRNA-Trp 1111007..1111082 Methylococcus capsulatus str. Bath 3102117 MCA_tRNA-Gly-2 tRNA MCA_tRNA-Gly-2 NC_002977.6 1147157 1147230 R tRNA-Gly complement(1147157..1147230) Methylococcus capsulatus str. Bath 3104711 MCA_tRNA-Ala-2 tRNA MCA_tRNA-Ala-2 NC_002977.6 1300895 1300970 D tRNA-Ala 1300895..1300970 Methylococcus capsulatus str. Bath 3104393 MCA_tRNA-Glu-1 tRNA MCA_tRNA-Glu-1 NC_002977.6 1300994 1301069 D tRNA-Glu 1300994..1301069 Methylococcus capsulatus str. Bath 3104698 MCA_tRNA-Val-3 tRNA MCA_tRNA-Val-3 NC_002977.6 1426954 1427028 D tRNA-Val 1426954..1427028 Methylococcus capsulatus str. Bath 3104641 MCA_tRNA-Met-1 tRNA MCA_tRNA-Met-1 NC_002977.6 1492636 1492712 R tRNA-Met complement(1492636..1492712) Methylococcus capsulatus str. Bath 3102425 MCA_tRNA-Ser-4 tRNA MCA_tRNA-Ser-4 NC_002977.6 1752376 1752466 D tRNA-Ser 1752376..1752466 Methylococcus capsulatus str. Bath 3102070 MCA_tRNA-Gly-3 tRNA MCA_tRNA-Gly-3 NC_002977.6 1787355 1787430 D tRNA-Gly 1787355..1787430 Methylococcus capsulatus str. Bath 3104715 MCA_tRNA-Cys-1 tRNA MCA_tRNA-Cys-1 NC_002977.6 1787486 1787559 D tRNA-Cys 1787486..1787559 Methylococcus capsulatus str. Bath 3104630 MCA_tRNA-Lys-2 tRNA MCA_tRNA-Lys-2 NC_002977.6 1825026 1825101 R tRNA-Lys complement(1825026..1825101) Methylococcus capsulatus str. Bath 3103152 MCA_tRNA-Leu-4 tRNA MCA_tRNA-Leu-4 NC_002977.6 2128247 2128331 D tRNA-Leu 2128247..2128331 Methylococcus capsulatus str. Bath 3105064 MCA_tRNA-Leu-5 tRNA MCA_tRNA-Leu-5 NC_002977.6 2225932 2226018 R tRNA-Leu complement(2225932..2226018) Methylococcus capsulatus str. Bath 3104819 MCA_tRNA-Arg-3 tRNA MCA_tRNA-Arg-3 NC_002977.6 2305048 2305124 D tRNA-Arg 2305048..2305124 Methylococcus capsulatus str. Bath 3104723 MCA_tRNA-Pro-2 tRNA MCA_tRNA-Pro-2 NC_002977.6 2305182 2305258 D tRNA-Pro 2305182..2305258 Methylococcus capsulatus str. Bath 3105061 MCA_tRNA-Glu-2 tRNA MCA_tRNA-Glu-2 NC_002977.6 2504641 2504716 R tRNA-Glu complement(2504641..2504716) Methylococcus capsulatus str. Bath 3104699 MCA_tRNA-Asn-1 tRNA MCA_tRNA-Asn-1 NC_002977.6 2557926 2558001 R tRNA-Asn complement(2557926..2558001) Methylococcus capsulatus str. Bath 3104584 MCA_tRNA-Arg-4 tRNA MCA_tRNA-Arg-4 NC_002977.6 2558037 2558113 R tRNA-Arg complement(2558037..2558113) Methylococcus capsulatus str. Bath 3104663 MCA_tRNA-Met-2 tRNA MCA_tRNA-Met-2 NC_002977.6 2682979 2683055 R tRNA-Met complement(2682979..2683055) Methylococcus capsulatus str. Bath 3104701 MCA_tRNA-Ala-3 tRNA MCA_tRNA-Ala-3 NC_002977.6 2915590 2915665 R tRNA-Ala complement(2915590..2915665) Methylococcus capsulatus str. Bath 3104996 MCA_tRNA-Ile-2 tRNA MCA_tRNA-Ile-2 NC_002977.6 2915675 2915751 R tRNA-Ile complement(2915675..2915751) Methylococcus capsulatus str. Bath 3104726 MCA_tRNA-Thr-3 tRNA MCA_tRNA-Thr-3 NC_002977.6 3090444 3090519 D tRNA-Thr 3090444..3090519 Methylococcus capsulatus str. Bath 3102278 MCA_tRNA-Met-3 tRNA MCA_tRNA-Met-3 NC_002977.6 3168604 3168680 D tRNA-Met 3168604..3168680 Methylococcus capsulatus str. Bath 3103016 MCA_tRNA-Pro-3 tRNA MCA_tRNA-Pro-3 NC_002977.6 3169116 3169192 R tRNA-Pro complement(3169116..3169192) Methylococcus capsulatus str. Bath 3105089 MCA_tRNA-Phe-1 tRNA MCA_tRNA-Phe-1 NC_002977.6 3198706 3198781 R tRNA-Phe complement(3198706..3198781) Methylococcus capsulatus str. Bath 3103028 MCA_Mc16SA rRNA rrsA NC_002977.6 788147 789619 D 16S ribosomal RNA 788147..789619 Methylococcus capsulatus str. Bath 3103938 MCA_Mc23SA rRNA rrlA NC_002977.6 790187 793090 D 23S ribosomal RNA 790187..793090 Methylococcus capsulatus str. Bath 3104047 MCA_Mc5SA rRNA rrfA NC_002977.6 793178 793294 D 5S ribosomal RNA 793178..793294 Methylococcus capsulatus str. Bath 3104154 MCA_Mc5SB rRNA rrfB NC_002977.6 2912259 2912375 R 5S ribosomal RNA complement(2912259..2912375) Methylococcus capsulatus str. Bath 3103975 MCA_Mc23SB rRNA rrlB NC_002977.6 2912463 2915366 R 23S ribosomal RNA complement(2912463..2915366) Methylococcus capsulatus str. Bath 3104064 MCA_Mc16SB rRNA rrsB NC_002977.6 2915934 2917406 R 16S ribosomal RNA complement(2915934..2917406) Methylococcus capsulatus str. Bath 3104721