-- dump date 20240506_001527 -- class Genbank::Contig -- table contig_comment -- id comment NC_012969.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001674.1.REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila ChistoserdovaREFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5 Pseudo Genes (internal stop) :: 0 of 5REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5 Pseudo Genes (internal stop) :: 0 of 5 Pseudo Genes (multiple problems) :: 1 of 5REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5 Pseudo Genes (internal stop) :: 0 of 5 Pseudo Genes (multiple problems) :: 1 of 5 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5 Pseudo Genes (internal stop) :: 0 of 5 Pseudo Genes (multiple problems) :: 1 of 5 ##Genome-Annotation-Data-END## ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5 Pseudo Genes (internal stop) :: 0 of 5 Pseudo Genes (multiple problems) :: 1 of 5 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5 Pseudo Genes (internal stop) :: 0 of 5 Pseudo Genes (multiple problems) :: 1 of 5 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5 Pseudo Genes (internal stop) :: 0 of 5 Pseudo Genes (multiple problems) :: 1 of 5 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5 Pseudo Genes (internal stop) :: 0 of 5 Pseudo Genes (multiple problems) :: 1 of 5 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5 Pseudo Genes (internal stop) :: 0 of 5 Pseudo Genes (multiple problems) :: 1 of 5 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5 Pseudo Genes (internal stop) :: 0 of 5 Pseudo Genes (multiple problems) :: 1 of 5 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5 Pseudo Genes (internal stop) :: 0 of 5 Pseudo Genes (multiple problems) :: 1 of 5 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5 Pseudo Genes (internal stop) :: 0 of 5 Pseudo Genes (multiple problems) :: 1 of 5 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5 Pseudo Genes (internal stop) :: 0 of 5 Pseudo Genes (multiple problems) :: 1 of 5 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5 Pseudo Genes (internal stop) :: 0 of 5 Pseudo Genes (multiple problems) :: 1 of 5 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5 Pseudo Genes (internal stop) :: 0 of 5 Pseudo Genes (multiple problems) :: 1 of 5 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh waterREFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5 Pseudo Genes (internal stop) :: 0 of 5 Pseudo Genes (multiple problems) :: 1 of 5 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001674.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5 Pseudo Genes (internal stop) :: 0 of 5 Pseudo Genes (multiple problems) :: 1 of 5 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## COMPLETENESS: full length. NC_012970.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001675.1.REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila ChistoserdovaREFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh waterREFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5 Pseudo Genes (internal stop) :: 0 of 5REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5 Pseudo Genes (internal stop) :: 0 of 5 Pseudo Genes (multiple problems) :: 1 of 5REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5 Pseudo Genes (internal stop) :: 0 of 5 Pseudo Genes (multiple problems) :: 1 of 5 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001675.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5 Pseudo Genes (internal stop) :: 0 of 5 Pseudo Genes (multiple problems) :: 1 of 5 ##Genome-Annotation-Data-END## COMPLETENESS: full length. NC_012972.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001676.1.REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila ChistoserdovaREFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh waterREFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5 Pseudo Genes (internal stop) :: 0 of 5REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5 Pseudo Genes (internal stop) :: 0 of 5 Pseudo Genes (multiple problems) :: 1 of 5REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5 Pseudo Genes (internal stop) :: 0 of 5 Pseudo Genes (multiple problems) :: 1 of 5 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001676.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086190 Source DNA and bacteria available from Ludmila Chistoserdova (milachis@u.washington.edu) Contacts: Ludmila Chistoserdova (milachis@u.washington.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Methylovorus sp. SIP3-4 GOLD Stamp ID :: Gi03952 Funding Program :: DOE-CSP 2009 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Habitat :: Fresh water ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/14/2023 04:15:36 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,952 CDSs (total) :: 2,894 Genes (coding) :: 2,889 CDSs (with protein) :: 2,889 Genes (RNA) :: 58 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 2 of 5 Pseudo Genes (incomplete) :: 4 of 5 Pseudo Genes (internal stop) :: 0 of 5 Pseudo Genes (multiple problems) :: 1 of 5 ##Genome-Annotation-Data-END## COMPLETENESS: full length.