-- dump date   	20140619_151101
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_879304.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_879305.1	binds the polymerase to DNA and acts as a sliding clamp
YP_879306.1	Required for DNA replication; binds preferentially to single-stranded, linear DNA
YP_879307.1	identified by match to protein family HMM PF05258
YP_879308.1	negatively supercoils closed circular double-stranded DNA
YP_879309.1	negatively supercoils closed circular double-stranded DNA
YP_879311.1	identified by match to protein family HMM PF00440
YP_879312.1	identified by match to protein family HMM PF00067
YP_879314.1	identified by match to protein family HMM PF00160
YP_879316.1	integral membrane protein involved in inhibition of the Z-ring formation
YP_879317.1	identified by match to protein family HMM PF05949
YP_879318.1	aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity
YP_879319.1	identified by match to protein family HMM PF00069; match to protein family HMM PF03793
YP_879320.1	identified by match to protein family HMM PF00069
YP_879321.1	identified by match to protein family HMM PF00905
YP_879322.1	identified by match to protein family HMM PF01098
YP_879323.1	identified by match to protein family HMM PF00481
YP_879324.1	identified by match to protein family HMM PF00498
YP_879325.1	identified by match to protein family HMM PF00498
YP_879329.1	carries the fatty acid chain in fatty acid biosynthesis
YP_879330.1	converts medium- to long-chain aliphatic fatty acids into acyl adenylate; involved in mycobactin synthesis
YP_879333.1	identified by match to protein family HMM PF00872
YP_879334.1	identified by match to protein family HMM PF00872
YP_879335.1	identified by match to protein family HMM PF00872
YP_879336.1	identified by match to protein family HMM PF01844; match to protein family HMM PF02720
YP_879338.1	identified by match to protein family HMM PF02678; match to protein family HMM PF05726
YP_879339.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_879340.1	identified by match to protein family HMM PF02467
YP_879341.1	identified by match to protein family HMM PF01381
YP_879342.1	identified by match to protein family HMM PF00877
YP_879350.1	identified by match to protein family HMM TIGR03083; match to protein family HMM TIGR03084
YP_879351.1	identified by match to protein family HMM PF07690
YP_879352.1	identified by match to protein family HMM PF02622
YP_879355.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_879356.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_879357.1	identified by match to protein family HMM PF01047
YP_879358.1	identified by match to protein family HMM PF00005
YP_879359.1	identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_879360.1	identified by match to protein family HMM PF00392
YP_879362.1	identified by match to protein family HMM PF00561
YP_879364.1	identified by match to protein family HMM PF01261
YP_879366.1	identified by match to protein family HMM PF00296
YP_879367.1	identified by match to protein family HMM PF01658; match to protein family HMM PF07994
YP_879368.1	identified by match to protein family HMM PF03551
YP_879369.1	identified by match to protein family HMM PF08044
YP_879371.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912
YP_879373.1	identified by match to protein family HMM PF01965
YP_879374.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_879375.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_879376.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_879378.1	identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR01443
YP_879379.1	identified by match to protein family HMM PF01553
YP_879381.1	identified by match to protein family HMM PF00440
YP_879382.1	identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833
YP_879385.1	identified by match to protein family HMM PF00106
YP_879387.1	identified by match to protein family HMM PF01565
YP_879389.1	identified by match to protein family HMM PF00027; match to protein family HMM PF00325
YP_879390.1	identified by match to protein family HMM PF00903
YP_879391.1	identified by match to protein family HMM PF00561
YP_879392.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_879393.1	identified by match to protein family HMM PF00892
YP_879394.1	identified by match to protein family HMM PF00583
YP_879397.1	identified by match to protein family HMM PF02405
YP_879398.1	identified by match to protein family HMM PF02470
YP_879399.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_879400.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_879401.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_879402.1	identified by match to protein family HMM PF02470
YP_879403.1	identified by match to protein family HMM PF02470
YP_879406.1	identified by match to protein family HMM PF00440
YP_879413.1	identified by match to protein family HMM PF00934
YP_879414.1	identified by match to protein family HMM PF00823
YP_879415.1	identified by match to protein family HMM PF05724
YP_879416.1	identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026
YP_879417.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916
YP_879418.1	identified by match to protein family HMM PF00296
YP_879419.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_879422.1	identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946
YP_879425.1	identified by match to protein family HMM PF02353
YP_879427.1	identified by match to protein family HMM PF00903
YP_879430.1	identified by match to protein family HMM PF03551
YP_879432.1	identified by match to protein family HMM PF00296
YP_879433.1	identified by match to protein family HMM PF07690
YP_879435.1	identified by match to protein family HMM PF00005
YP_879436.1	identified by match to protein family HMM TIGR01728
YP_879437.1	identified by match to protein family HMM PF00528
YP_879438.1	identified by match to protein family HMM PF01266
YP_879439.1	identified by match to protein family HMM PF00583
YP_879440.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_879441.1	identified by match to protein family HMM PF00440
YP_879442.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_879443.1	identified by match to protein family HMM PF00378
YP_879444.1	identified by match to protein family HMM PF00440
YP_879445.1	identified by match to protein family HMM PF00903
YP_879451.1	identified by match to protein family HMM PF04600; match to protein family HMM TIGR02958
YP_879452.1	identified by match to protein family HMM PF00082
YP_879454.1	identified by match to protein family HMM PF00004
YP_879455.1	identified by match to protein family HMM TIGR00026
YP_879456.1	identified by match to protein family HMM PF05368
YP_879457.1	member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_879460.1	identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898
YP_879461.1	glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate
YP_879463.1	identified by match to protein family HMM PF00296
YP_879465.1	identified by match to protein family HMM PF02811
YP_879466.1	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_879467.1	identified by match to protein family HMM PF00440
YP_879469.1	regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity
YP_879471.1	identified by match to protein family HMM PF04234
YP_879472.1	identified by match to protein family HMM PF07987
YP_879476.1	identified by match to protein family HMM PF00081; match to protein family HMM PF02777
YP_879479.1	identified by match to protein family HMM PF03009
YP_879480.1	identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_879482.1	catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis
YP_879483.1	identified by match to protein family HMM PF00300
YP_879485.1	identified by match to protein family HMM PF06262
YP_879487.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_879488.1	identified by match to protein family HMM PF00165
YP_879491.1	identified by match to protein family HMM PF00440
YP_879492.1	identified by match to protein family HMM PF01266
YP_879494.1	identified by match to protein family HMM PF00355
YP_879496.1	identified by match to protein family HMM PF01553
YP_879497.1	identified by match to protein family HMM PF01553
YP_879498.1	identified by match to protein family HMM PF01553
YP_879499.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_879500.1	identified by match to protein family HMM PF01510
YP_879502.1	identified by match to protein family HMM PF03275; match to protein family HMM TIGR00031
YP_879504.1	identified by match to protein family HMM PF01569
YP_879505.1	catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate
YP_879508.1	identified by match to protein family HMM PF00756
YP_879509.1	identified by match to protein family HMM PF00756
YP_879510.1	identified by match to protein family HMM PF01083
YP_879511.1	activates fatty acids by binding to coenzyme A
YP_879512.1	identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801
YP_879513.1	identified by match to protein family HMM PF01039
YP_879514.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_879515.1	identified by match to protein family HMM PF00165
YP_879516.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_879519.1	identified by match to protein family HMM PF00486; match to protein family HMM PF00498; match to protein family HMM PF03704
YP_879520.1	identified by match to protein family HMM TIGR03083
YP_879522.1	identified by match to protein family HMM PF04602
YP_879524.1	identified by match to protein family HMM PF00106
YP_879525.1	identified by match to protein family HMM PF01565
YP_879526.1	identified by match to protein family HMM PF04138
YP_879527.1	Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation
YP_879528.1	identified by match to protein family HMM PF02668
YP_879529.1	identified by match to protein family HMM PF01061
YP_879530.1	identified by match to protein family HMM PF00535
YP_879531.1	identified by match to protein family HMM PF00005
YP_879533.1	identified by match to protein family HMM PF00266; match to protein family HMM TIGR01976
YP_879534.1	identified by match to protein family HMM PF00107; match to protein family HMM TIGR02824
YP_879537.1	identified by match to protein family HMM PF00144
YP_879538.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_879539.1	identified by match to protein family HMM TIGR03083; match to protein family HMM TIGR03086
YP_879541.1	identified by match to protein family HMM PF00155; match to protein family HMM TIGR01141
YP_879542.1	identified by match to protein family HMM PF00589
YP_879543.1	identified by match to protein family HMM TIGR01764
YP_879553.1	identified by match to protein family HMM PF01580
YP_879555.1	identified by match to protein family HMM TIGR01764
YP_879559.1	identified by match to protein family HMM PF00583
YP_879560.1	identified by match to protein family HMM PF01381
YP_879564.1	identified by match to protein family HMM PF01555
YP_879568.1	identified by match to protein family HMM PF00089
YP_879571.1	identified by match to protein family HMM TIGR01764
YP_879577.1	identified by match to protein family HMM PF00462
YP_879581.1	identified by match to protein family HMM PF00589
YP_879589.1	identified by match to protein family HMM PF01636
YP_879590.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_879593.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_879594.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_879595.1	identified by match to protein family HMM PF05481
YP_879596.1	identified by match to protein family HMM PF00753
YP_879597.1	identified by match to protein family HMM PF00107
YP_879598.1	identified by match to protein family HMM PF00440
YP_879599.1	identified by match to protein family HMM PF00106
YP_879600.1	identified by match to protein family HMM PF01636
YP_879601.1	identified by match to protein family HMM PF05724
YP_879602.1	identified by match to protein family HMM PF00300
YP_879603.1	identified by match to protein family HMM PF01636
YP_879605.1	identified by match to protein family HMM PF04069
YP_879606.1	identified by match to protein family HMM PF00005
YP_879607.1	identified by match to protein family HMM PF00528
YP_879608.1	identified by match to protein family HMM PF00528
YP_879609.1	identified by match to protein family HMM PF06475
YP_879610.1	catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate
YP_879612.1	identified by match to protein family HMM PF00383
YP_879613.1	identified by match to protein family HMM PF01341
YP_879614.1	identified by match to protein family HMM PF00188
YP_879616.1	identified by match to protein family HMM PF00872
YP_879623.1	identified by match to protein family HMM PF00753
YP_879625.1	identified by match to protein family HMM PF00296
YP_879626.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_879628.1	identified by match to protein family HMM PF02515
YP_879629.1	identified by match to protein family HMM PF03328
YP_879630.1	biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate
YP_879631.1	catalyzes the formation of citrate from acetyl-CoA and oxaloacetate
YP_879632.1	identified by match to protein family HMM TIGR02317
YP_879633.1	identified by match to protein family HMM PF03972
YP_879634.1	identified by match to protein family HMM PF01381; match to protein family HMM PF06114
YP_879635.1	identified by match to protein family HMM PF00294
YP_879636.1	identified by similarity to GB:BAB40320.1; match to protein family HMM PF00389; match to protein family HMM PF02826
YP_879637.1	identified by match to protein family HMM PF00440
YP_879638.1	identified by match to protein family HMM PF00106
YP_879641.1	identified by match to protein family HMM PF00106
YP_879642.1	identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946
YP_879643.1	identified by match to protein family HMM PF00293
YP_879644.1	identified by match to protein family HMM PF00561
YP_879645.1	identified by match to protein family HMM PF00067
YP_879648.1	catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; in mycobacteria LigC has weak intrinsic nick joining activities and is not essential for growth
YP_879649.1	identified by match to protein family HMM TIGR02778
YP_879653.1	identified by match to protein family HMM PF00067
YP_879654.1	identified by match to protein family HMM PF00440
YP_879655.1	identified by match to protein family HMM PF01083
YP_879657.1	identified by match to protein family HMM PF01113
YP_879667.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA
YP_879668.1	identified by match to protein family HMM PF02353
YP_879669.1	identified by match to protein family HMM PF01565
YP_879671.1	identified by match to protein family HMM PF01520
YP_879672.1	identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103
YP_879673.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_879674.1	identified by match to protein family HMM PF07685
YP_879676.1	3'-5' exonuclease of DNA polymerase III
YP_879677.1	identified by match to protein family HMM PF00682; match to protein family HMM TIGR00970
YP_879678.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.
YP_879679.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_879684.1	identified by match to protein family HMM PF04107
YP_879685.1	identified by match to protein family HMM PF03781
YP_879688.1	identified by match to protein family HMM PF00266
YP_879689.1	identified by match to protein family HMM PF05724
YP_879691.1	Converts glycerol and ADP to glycerol-3-phosphate and ADP
YP_879692.1	identified by match to protein family HMM PF03551
YP_879694.1	identified by match to protein family HMM PF06271
YP_879696.1	identified by match to protein family HMM PF01882
YP_879697.1	identified by match to protein family HMM PF07726; match to protein family HMM PF07728
YP_879701.1	identified by match to protein family HMM PF02637
YP_879702.1	identified by match to protein family HMM PF00009; match to protein family HMM PF03144
YP_879703.1	catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis
YP_879704.1	identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00476
YP_879705.1	identified by match to protein family HMM PF04879
YP_879706.1	identified by match to protein family HMM PF01568
YP_879707.1	identified by match to protein family HMM PF00037
YP_879708.1	identified by match to protein family HMM PF03916
YP_879709.1	identified by match to protein family HMM PF00296
YP_879710.1	identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382
YP_879711.1	identified by match to protein family HMM PF01170; match to protein family HMM PF05175; match to protein family HMM TIGR00537
YP_879714.1	identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07228; match to protein family HMM TIGR00229
YP_879715.1	identified by match to protein family HMM PF07228
YP_879716.1	identified by match to protein family HMM PF02518
YP_879717.1	identified by match to protein family HMM PF01740
YP_879718.1	identified by match to protein family HMM PF01740
YP_879719.1	identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377
YP_879721.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_879723.1	identified by match to protein family HMM PF04471
YP_879724.1	identified by match to protein family HMM PF01590; match to protein family HMM PF03861
YP_879725.1	identified by match to protein family HMM TIGR03083; match to protein family HMM TIGR03086
YP_879726.1	identified by match to protein family HMM PF00291
YP_879727.1	identified by match to protein family HMM PF00149
YP_879728.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF03793
YP_879729.1	identified by match to protein family HMM PF02467
YP_879730.1	identified by match to protein family HMM PF02374
YP_879731.1	identified by match to protein family HMM PF02374
YP_879733.1	identified by match to protein family HMM PF01042
YP_879734.1	identified by match to protein family HMM PF00753
YP_879735.1	identified by match to protein family HMM PF00027; match to protein family HMM PF00325
YP_879737.1	identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083
YP_879739.1	identified by match to protein family HMM PF00293
YP_879740.1	identified by match to protein family HMM PF00089; match to protein family HMM PF02674
YP_879741.1	identified by match to protein family HMM PF00561
YP_879742.1	identified by match to protein family HMM PF07332
YP_879744.1	Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA
YP_879746.1	identified by match to protein family HMM PF00496
YP_879747.1	identified by match to protein family HMM PF00528
YP_879748.1	identified by match to protein family HMM PF00528
YP_879749.1	identified by match to protein family HMM PF00005
YP_879751.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490
YP_879753.1	identified by match to protein family HMM PF00437
YP_879755.1	identified by match to protein family HMM PF00872
YP_879756.1	identified by match to protein family HMM PF00440
YP_879757.1	identified by match to protein family HMM PF04909
YP_879758.1	identified by match to protein family HMM PF01796
YP_879760.1	identified by match to protein family HMM PF02515
YP_879761.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_879763.1	identified by match to protein family HMM PF04909
YP_879764.1	identified by match to protein family HMM PF00248
YP_879765.1	identified by match to protein family HMM PF03992
YP_879767.1	identified by match to protein family HMM PF01047
YP_879769.1	identified by match to protein family HMM PF01738
YP_879770.1	identified by match to protein family HMM PF00440
YP_879771.1	identified by match to protein family HMM PF03928
YP_879772.1	identified by match to protein family HMM PF03328
YP_879774.1	identified by match to protein family HMM PF00135
YP_879775.1	identified by match to protein family HMM PF07366
YP_879777.1	identified by match to protein family HMM PF01548; match to protein family HMM PF02371
YP_879785.1	identified by match to protein family HMM PF00589
YP_879786.1	identified by match to protein family HMM PF00589; match to protein family HMM PF02899
YP_879787.1	identified by match to protein family HMM PF06114
YP_879790.1	identified by match to protein family HMM PF00482
YP_879791.1	identified by match to protein family HMM PF00482
YP_879796.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_879797.1	identified by match to protein family HMM PF00313
YP_879799.1	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity
YP_879800.1	identified by match to protein family HMM PF00211; match to protein family HMM PF00672
YP_879801.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA
YP_879803.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_879805.1	identified by match to protein family HMM PF00535
YP_879807.1	identified by match to protein family HMM PF04332
YP_879808.1	identified by match to protein family HMM PF00719
YP_879809.1	identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666
YP_879811.1	identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432
YP_879812.1	identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203
YP_879813.1	identified by match to protein family HMM PF04402
YP_879814.1	identified by match to protein family HMM PF00934
YP_879815.1	identified by match to protein family HMM PF00823
YP_879816.1	identified by match to protein family HMM PF01844; match to protein family HMM PF02720
YP_879817.1	identified by match to protein family HMM PF00107
YP_879818.1	identified by match to protein family HMM PF00296
YP_879819.1	identified by match to protein family HMM PF00561
YP_879820.1	identified by match to protein family HMM PF00903
YP_879822.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241
YP_879823.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_879824.1	identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496
YP_879825.1	identified by match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526
YP_879826.1	identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498
YP_879831.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_879832.1	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)
YP_879833.1	type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP
YP_879834.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_879836.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_879839.1	identified by match to protein family HMM PF00300
YP_879840.1	identified by match to protein family HMM PF03055
YP_879842.1	identified by match to protein family HMM PF03992
YP_879843.1	identified by match to protein family HMM PF00561
YP_879844.1	identified by match to protein family HMM PF00633; match to protein family HMM PF00730
YP_879845.1	identified by match to protein family HMM PF00484
YP_879847.1	non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair
YP_879848.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_879850.1	identified by match to protein family HMM PF02559
YP_879851.1	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers
YP_879852.1	catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
YP_879853.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_879854.1	identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186
YP_879855.1	identified by match to protein family HMM PF03009
YP_879857.1	identified by match to protein family HMM PF00196; match to protein family HMM PF07721
YP_879858.1	identified by match to protein family HMM PF02040; match to protein family HMM PF03600
YP_879860.1	identified by match to protein family HMM PF03746
YP_879861.1	identified by match to protein family HMM PF00950; match to protein family HMM PF02653
YP_879862.1	identified by match to protein family HMM PF00005
YP_879863.1	identified by match to protein family HMM PF01297
YP_879864.1	identified by match to protein family HMM PF00532
YP_879865.1	identified by match to protein family HMM PF00440
YP_879866.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_879867.1	identified by match to protein family HMM PF00440
YP_879868.1	identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993
YP_879870.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970
YP_879871.1	identified by match to protein family HMM PF08028
YP_879872.1	identified by match to protein family HMM PF00561
YP_879873.1	identified by match to protein family HMM PF00903
YP_879874.1	identified by match to protein family HMM PF01613
YP_879875.1	identified by match to protein family HMM PF00797
YP_879876.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_879877.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_879878.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_879879.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771
YP_879880.1	activates fatty acids by binding to coenzyme A
YP_879881.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_879882.1	identified by match to protein family HMM PF00106
YP_879883.1	identified by match to protein family HMM PF00440
YP_879884.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_879887.1	identified by similarity to GB:AAF98273.1; match to protein family HMM PF03060
YP_879889.1	identified by match to protein family HMM PF01144
YP_879890.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_879891.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_879892.1	identified by match to protein family HMM PF00106
YP_879893.1	identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026
YP_879895.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_879896.1	identified by match to protein family HMM PF00067
YP_879897.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_879898.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771
YP_879899.1	identified by match to protein family HMM PF01796
YP_879903.1	identified by match to protein family HMM PF01575
YP_879904.2	initiates steroid ring degradation; catalyzes the transhydrogenation of 3-keto-4-ene-steroid to 3-keto-1,4-diene-steroid e.g., progesterone to 1,4-androstadiene-3,17-dione
YP_879905.1	identified by match to protein family HMM PF01689
YP_879906.2	catalyzes the formation of acetyl-CoA from acetalaldehyde
YP_879907.1	catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate
YP_879910.1	identified by match to protein family HMM PF00106
YP_879913.1	identified by match to protein family HMM PF00355
YP_879916.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_879918.1	identified by match to protein family HMM PF01796
YP_879919.1	identified by match to protein family HMM PF00296
YP_879921.1	identified by match to protein family HMM PF00067
YP_879923.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_879924.1	activates fatty acids by binding to coenzyme A; in Mycobacterium may be involved in virulence
YP_879925.1	identified by match to protein family HMM PF01636; match to protein family HMM PF03881
YP_879926.1	identified by match to protein family HMM PF04909
YP_879927.1	thiamine-pyrophosphate requiring enzyme
YP_879930.1	activates fatty acids by binding to coenzyme A
YP_879931.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_879932.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_879934.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_879935.1	identified by match to protein family HMM PF02405
YP_879936.1	identified by match to protein family HMM PF02405
YP_879937.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_879938.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_879939.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_879940.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_879941.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_879945.1	identified by match to protein family HMM PF00534; match to protein family HMM PF00982
YP_879947.1	identified by match to protein family HMM PF00005
YP_879948.1	identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245
YP_879949.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_879950.1	identified by match to protein family HMM PF00106
YP_879951.1	identified by match to protein family HMM PF00106
YP_879952.1	identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_879955.1	identified by match to protein family HMM PF01425
YP_879956.1	identified by match to protein family HMM PF00561
YP_879958.1	identified by match to protein family HMM PF05481
YP_879960.1	identified by match to protein family HMM PF01464
YP_879961.1	identified by match to protein family HMM PF05305
YP_879973.1	identified by match to protein family HMM PF05930
YP_879975.1	identified by match to protein family HMM PF00589
YP_879977.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_879978.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_879979.1	identified by match to protein family HMM PF01230
YP_879980.1	identified by match to protein family HMM PF02136
YP_879981.1	identified by match to protein family HMM PF00107
YP_879984.1	identified by match to protein family HMM PF00067
YP_879985.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_879986.1	identified by match to protein family HMM PF00440
YP_879988.1	identified by match to protein family HMM PF00171
YP_879989.1	identified by match to protein family HMM PF00106
YP_879990.1	identified by match to protein family HMM PF03446
YP_879991.1	identified by match to protein family HMM PF02627
YP_879992.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_879993.1	identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066
YP_879994.1	identified by match to protein family HMM PF00756; match to protein family HMM TIGR01409
YP_879995.1	identified by match to protein family HMM PF00440
YP_879997.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_879998.1	identified by match to protein family HMM PF00067
YP_880000.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_880001.1	identified by match to protein family HMM PF00326; match to protein family HMM PF02897
YP_880003.1	identified by match to protein family HMM PF00440
YP_880004.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_880005.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_880007.1	proposed role in polysaccahride synthesis
YP_880008.1	identified by match to protein family HMM PF00753
YP_880010.1	With PurL and PurQ catalyzes the conversion of formylglycinamide ribonucleotide, ATP, and glutamine to formylglycinamidine ribonucleotide, ADP, and glutamate in the fourth step of the purine biosynthetic pathway
YP_880011.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_880013.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_880014.1	identified by match to protein family HMM PF07883
YP_880015.1	identified by match to protein family HMM PF04454
YP_880016.1	identified by match to protein family HMM PF04261; match to protein family HMM TIGR01413
YP_880017.1	catalyzes the removal of amino acids from the N termini of peptides
YP_880018.1	identified by match to protein family HMM PF00903
YP_880019.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_880020.1	identified by match to protein family HMM PF02517
YP_880022.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_880023.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_880025.1	identified by match to protein family HMM PF01571
YP_880026.1	catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate
YP_880027.1	identified by match to protein family HMM PF00665
YP_880030.1	identified by match to protein family HMM PF07210
YP_880031.1	identified by match to protein family HMM PF00581
YP_880033.1	identified by match to protein family HMM PF00085
YP_880035.1	identified by match to protein family HMM PF00486
YP_880036.1	identified by match to protein family HMM PF00583
YP_880039.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974
YP_880040.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_880041.1	identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135
YP_880042.1	identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_880044.1	identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737
YP_880045.1	identified by match to protein family HMM PF03405
YP_880049.1	identified by match to protein family HMM PF01022
YP_880050.1	identified by match to protein family HMM PF00383
YP_880051.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_880052.1	identified by match to protein family HMM PF00589
YP_880060.1	identified by match to protein family HMM PF01183
YP_880063.1	identified by match to protein family HMM PF00823
YP_880073.1	identified by match to protein family HMM TIGR01760
YP_880086.1	identified by match to protein family HMM PF03354
YP_880101.1	similar to Rickettsia 17 kDa surface antigen family protein
YP_880102.1	identified by match to protein family HMM PF03837; match to protein family HMM TIGR00616
YP_880110.1	identified by match to protein family HMM PF02498
YP_880112.1	identified by match to protein family HMM PF02498
YP_880114.1	identified by match to protein family HMM PF00376; match to protein family HMM TIGR01764
YP_880115.1	identified by match to protein family HMM PF00106
YP_880116.1	identified by match to protein family HMM PF00440
YP_880118.1	identified by match to protein family HMM PF00067
YP_880121.1	identified by match to protein family HMM PF00313
YP_880122.1	identified by match to protein family HMM PF01427
YP_880123.1	identified by match to protein family HMM PF01209; match to protein family HMM PF05175
YP_880124.1	identified by match to protein family HMM PF00106
YP_880125.1	identified by match to protein family HMM PF01642; match to protein family HMM TIGR00641
YP_880126.1	identified by match to protein family HMM PF02310; match to protein family HMM TIGR00640
YP_880127.1	identified by match to protein family HMM PF02515
YP_880128.1	identified by match to protein family HMM PF04909
YP_880130.1	identified by match to protein family HMM PF00111
YP_880131.1	identified by match to protein family HMM PF00501
YP_880132.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_880133.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771
YP_880135.1	identified by match to protein family HMM PF00378
YP_880136.1	identified by match to protein family HMM PF00561; match to protein family HMM TIGR01250
YP_880137.1	identified by match to protein family HMM PF05870
YP_880138.1	identified by match to protein family HMM PF03308; match to protein family HMM TIGR00750
YP_880139.1	identified by match to protein family HMM PF00676
YP_880140.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_880141.1	identified by match to protein family HMM PF02518
YP_880142.1	identified by match to protein family HMM PF00890; match to protein family HMM PF01266
YP_880143.1	identified by match to protein family HMM PF01614
YP_880144.1	identified by match to protein family HMM PF00561
YP_880145.1	catalyzes the formation of 3-(2,3-dihydroxyphenyl)propionate from 3-(3-hydroxyphenyl)propionate
YP_880146.1	initiates steroid ring degradation; catalyzes the transhydrogenation of 3-keto-4-ene-steroid to 3-keto-1,4-diene-steroid e.g., progesterone to 1,4-androstadiene-3,17-dione
YP_880147.1	identified by match to protein family HMM PF00296
YP_880148.1	catalyzes the formation of 5-alpha-androstane-3,17-dione from androsterone; Acts on other 3-alpha-hydroxysteroids and on 9-, 11- and 15-hydroxyprostaglandin.
YP_880149.1	identified by match to protein family HMM PF04199
YP_880150.1	identified by match to protein family HMM PF00561
YP_880151.1	identified by match to protein family HMM PF00106
YP_880152.1	identified by match to protein family HMM PF00440
YP_880154.1	identified by match to protein family HMM PF04909
YP_880155.1	identified by match to protein family HMM PF00557
YP_880156.1	identified by match to protein family HMM PF00557
YP_880157.1	identified by match to protein family HMM PF02515
YP_880158.1	identified by match to protein family HMM PF00106
YP_880159.1	identified by match to protein family HMM PF00106
YP_880160.1	identified by match to protein family HMM PF00106
YP_880161.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_880163.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_880164.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_880166.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07969
YP_880168.1	identified by match to protein family HMM PF00355
YP_880169.1	identified by match to protein family HMM PF02627
YP_880170.1	identified by match to protein family HMM PF04909
YP_880171.1	identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930
YP_880172.1	identified by match to protein family HMM PF00440
YP_880176.1	identified by match to protein family HMM PF07045
YP_880178.1	identified by match to protein family HMM PF00067
YP_880179.1	identified by match to protein family HMM PF03446; match to protein family HMM PF03807
YP_880181.1	identified by match to protein family HMM PF01796
YP_880183.1	identified by match to protein family HMM PF01370; match to protein family HMM PF05368; match to protein family HMM PF07993
YP_880185.1	identified by match to protein family HMM PF00296
YP_880187.1	identified by match to protein family HMM PF01512
YP_880190.1	identified by match to protein family HMM PF00355
YP_880191.1	identified by match to protein family HMM PF04909
YP_880192.1	identified by match to protein family HMM PF04909
YP_880193.1	identified by match to protein family HMM PF03446
YP_880194.1	identified by match to protein family HMM PF00881
YP_880195.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_880196.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_880197.1	identified by match to protein family HMM PF00756
YP_880201.1	identified by match to protein family HMM PF00067
YP_880203.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073
YP_880205.1	identified by match to protein family HMM PF00171
YP_880206.1	identified by match to protein family HMM PF02515
YP_880207.1	identified by match to protein family HMM PF02405
YP_880208.1	identified by match to protein family HMM PF02405
YP_880209.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_880210.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_880211.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_880212.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_880213.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_880219.1	identified by match to protein family HMM PF00440
YP_880222.1	identified by match to protein family HMM PF00510
YP_880224.1	identified by match to protein family HMM PF00067
YP_880225.1	identified by match to protein family HMM PF00440
YP_880227.1	identified by match to protein family HMM PF00378
YP_880230.1	identified by match to protein family HMM PF04909
YP_880231.1	activates fatty acids by binding to coenzyme A
YP_880233.1	identified by match to protein family HMM PF04324
YP_880234.1	identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776
YP_880235.1	similar to streptomyces cyclase/dehydrase; identified by match to protein family HMM PF03364
YP_880236.1	identified by match to protein family HMM PF02515
YP_880237.1	similar to streptomyces cyclase/dehydrase; identified by match to protein family HMM PF03364
YP_880239.1	identified by match to protein family HMM PF00155
YP_880240.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_880241.1	identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737
YP_880242.1	identified by match to protein family HMM PF05724
YP_880245.1	identified by match to protein family HMM PF00440
YP_880246.1	identified by match to protein family HMM PF00296
YP_880247.1	identified by match to protein family HMM PF03992
YP_880248.1	identified by match to protein family HMM PF01796
YP_880249.1	identified by match to protein family HMM PF02803
YP_880250.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851
YP_880253.1	identified by match to protein family HMM PF01967; match to protein family HMM TIGR00581
YP_880254.1	identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177
YP_880255.1	identified by match to protein family HMM PF02391
YP_880256.1	identified by match to protein family HMM PF06737
YP_880257.1	identified by match to protein family HMM PF02597
YP_880258.1	identified by match to protein family HMM PF03733
YP_880259.1	identified by match to protein family HMM PF00313
YP_880260.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_880268.1	identified by match to protein family HMM PF00588; match to protein family HMM PF01047
YP_880271.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate
YP_880273.1	identified by match to protein family HMM PF00037; match to protein family HMM PF07992
YP_880274.1	identified by match to protein family HMM PF00903
YP_880275.1	forms citrate from oxaloacetate and acetyl-CoA; functions in TCA cycle
YP_880276.1	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate
YP_880279.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_880280.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_880281.1	identified by match to protein family HMM PF07690
YP_880282.1	identified by match to protein family HMM PF00534
YP_880284.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_880286.1	identified by match to protein family HMM PF00144
YP_880287.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494
YP_880298.1	identified by match to protein family HMM PF05908
YP_880299.1	identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197
YP_880300.1	identified by match to protein family HMM PF01113
YP_880301.1	identified by match to protein family HMM PF00106
YP_880302.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975
YP_880303.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138
YP_880304.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974
YP_880305.1	identified by match to protein family HMM PF02735; match to protein family HMM TIGR02772
YP_880306.1	identified by match to protein family HMM PF00294
YP_880307.1	identified by match to protein family HMM PF01232; match to protein family HMM PF08125
YP_880308.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_880309.1	identified by match to protein family HMM PF01232; match to protein family HMM PF08125
YP_880311.1	catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA and has been shown to have polymerase activity
YP_880312.1	identified by match to protein family HMM PF00753; match to protein family HMM PF01557
YP_880313.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_880314.1	identified by match to protein family HMM PF01548; match to protein family HMM PF02371
YP_880315.1	identified by match to protein family HMM PF00378
YP_880317.1	identified by match to protein family HMM PF01740
YP_880319.1	catalyzes the formation of precorrin 6x from precorrin 5
YP_880320.1	identified by match to protein family HMM PF01149; match to protein family HMM PF06831
YP_880321.1	identified by match to protein family HMM PF00106
YP_880322.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_880323.1	identified by match to protein family HMM PF01817; match to protein family HMM TIGR01808
YP_880325.1	identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073
YP_880327.1	identified by match to protein family HMM PF01551
YP_880328.1	catalyzes the interconversion of succinyl-CoA and succinate
YP_880329.1	Catalyzes the only substrate-level phosphorylation in the TCA cycle
YP_880330.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_880331.1	identified by match to protein family HMM PF00296
YP_880334.1	glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate
YP_880335.1	involved in de novo purine biosynthesis
YP_880338.1	identified by match to protein family HMM PF00248
YP_880339.1	identified by match to protein family HMM PF08044
YP_880340.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_880341.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_880342.1	identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786
YP_880343.1	identified by match to protein family HMM PF01039
YP_880344.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_880345.1	identified by match to protein family HMM PF07287
YP_880346.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_880347.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_880348.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_880349.1	identified by match to protein family HMM PF00089; match to protein family HMM PF00595
YP_880350.1	identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177
YP_880351.1	forms homopentamer; channel that opens in response to pressure or hypoosmotic shock
YP_880353.1	identified by match to protein family HMM TIGR02605
YP_880354.1	identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727
YP_880355.1	identified by match to protein family HMM PF00483
YP_880356.1	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177
YP_880357.1	identified by match to protein family HMM PF00583
YP_880365.1	identified by match to protein family HMM PF00440
YP_880367.1	identified by match to protein family HMM PF00440
YP_880368.1	identified by match to protein family HMM PF00355
YP_880369.1	identified by match to protein family HMM PF05343
YP_880370.1	identified by match to protein family HMM PF00288
YP_880371.1	identified by match to protein family HMM TIGR00441
YP_880372.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662
YP_880373.1	identified by match to protein family HMM PF00027; match to protein family HMM PF00583
YP_880377.1	catalyzes the degradation of arginine to citruline and ammonia
YP_880378.1	identified by match to protein family HMM PF02366
YP_880379.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096
YP_880380.1	catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine
YP_880381.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; match to protein family HMM TIGR02957
YP_880382.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF07992
YP_880384.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00254
YP_880385.1	identified by match to protein family HMM TIGR01444
YP_880387.1	identified by match to protein family HMM PF02706
YP_880388.1	identified by match to protein family HMM PF04932
YP_880389.1	identified by match to protein family HMM PF00534
YP_880391.1	identified by match to protein family HMM PF00440
YP_880392.1	identified by match to protein family HMM PF00440
YP_880393.1	identified by match to protein family HMM PF01522
YP_880394.1	identified by match to protein family HMM PF00989
YP_880395.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_880396.1	identified by match to protein family HMM PF01026; match to protein family HMM PF04909; match to protein family HMM TIGR00010
YP_880397.1	identified by match to protein family HMM PF03990; match to protein family HMM PF06737; match to protein family HMM PF07501
YP_880398.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_880399.1	catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis
YP_880400.1	activates fatty acids by binding to coenzyme A
YP_880401.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_880402.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_880403.1	identified by match to protein family HMM PF00106; match to protein family HMM PF07993
YP_880405.1	identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014
YP_880406.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_880407.1	forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis
YP_880408.1	identified by match to protein family HMM PF00440
YP_880409.1	identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048
YP_880410.1	functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era
YP_880412.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_880413.1	identified by match to protein family HMM PF04977
YP_880414.1	identified by match to protein family HMM PF04417
YP_880415.1	identified by match to protein family HMM PF02541
YP_880417.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_880418.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702
YP_880419.1	identified by match to protein family HMM PF02669
YP_880420.1	One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_880421.1	catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_880423.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_880424.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_880425.1	identified by match to protein family HMM PF06359
YP_880426.1	identified by match to protein family HMM PF06013
YP_880430.1	identified by match to protein family HMM PF04248
YP_880431.1	identified by match to protein family HMM TIGR02276
YP_880432.1	activates fatty acids by binding to coenzyme A
YP_880434.1	identified by match to protein family HMM PF00310
YP_880435.1	identified by match to protein family HMM PF01734
YP_880436.1	identified by match to protein family HMM PF01734
YP_880438.1	identified by match to protein family HMM PF05995
YP_880441.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_880442.1	catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA
YP_880443.1	identified by match to protein family HMM PF06539
YP_880444.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_880445.1	identified by match to protein family HMM PF00657
YP_880446.1	identified by match to protein family HMM PF07859
YP_880447.1	identified by match to protein family HMM PF00291; match to protein family HMM PF00571; match to protein family HMM TIGR01137
YP_880448.1	identified by match to protein family HMM PF06271
YP_880449.1	catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine
YP_880450.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_880452.1	identified by match to protein family HMM PF02585
YP_880454.1	identified by match to protein family HMM PF03190
YP_880455.1	identified by match to protein family HMM PF02136
YP_880456.1	identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065
YP_880457.1	identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055
YP_880460.1	catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis
YP_880461.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_880462.1	identified by match to protein family HMM PF03405
YP_880463.1	identified by match to protein family HMM PF02562
YP_880464.1	identified by match to protein family HMM PF01522
YP_880465.1	identified by match to protein family HMM PF00211; match to protein family HMM PF00672
YP_880467.1	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
YP_880468.1	type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese
YP_880471.1	identified by match to protein family HMM PF00135
YP_880472.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_880473.1	catalyzes the bidirectional exonucleolytic cleavage of DNA
YP_880474.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_880476.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_880478.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_880480.1	identified by match to protein family HMM PF00872
YP_880481.1	identified by match to protein family HMM PF01844
YP_880482.1	identified by match to protein family HMM PF00872
YP_880483.1	identified by match to protein family HMM PF00872
YP_880484.1	identified by similarity to RF:ZP_00993826.1
YP_880485.1	identified by match to protein family HMM PF01850
YP_880486.1	identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026
YP_880487.1	identified by match to protein family HMM PF00106
YP_880488.1	identified by match to protein family HMM PF00440
YP_880489.1	identified by match to protein family HMM PF00903
YP_880493.1	identified by match to protein family HMM PF03992
YP_880496.1	identified by match to protein family HMM PF00211
YP_880497.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_880498.1	similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate
YP_880499.1	identified by match to protein family HMM PF00561
YP_880500.1	identified by match to protein family HMM PF06983
YP_880501.1	identified by match to protein family HMM PF00561
YP_880502.1	identified by match to protein family HMM PF03007
YP_880504.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_880505.1	identified by match to protein family HMM PF07681
YP_880507.1	catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine
YP_880508.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370
YP_880509.1	identified by match to protein family HMM PF00106
YP_880510.1	identified by match to protein family HMM PF00440
YP_880511.1	identified by match to protein family HMM PF00881
YP_880512.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_880513.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_880514.1	identified by match to protein family HMM PF00092
YP_880515.1	identified by match to protein family HMM PF07728
YP_880518.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_880519.1	identified by match to protein family HMM PF00067
YP_880520.1	identified by match to protein family HMM PF00171
YP_880521.1	identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930
YP_880522.1	identified by match to protein family HMM PF00378
YP_880523.1	identified by match to protein family HMM PF01494
YP_880524.1	identified by match to protein family HMM PF04140
YP_880525.1	identified by match to protein family HMM PF00195; match to protein family HMM PF02797
YP_880526.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368
YP_880527.1	identified by match to protein family HMM PF02517
YP_880528.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_880529.1	identified by match to protein family HMM PF02515
YP_880530.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_880534.1	Modulates the activities of several enzymes which are inactive in their acetylated form
YP_880535.1	identified by match to protein family HMM PF00392
YP_880536.1	identified by match to protein family HMM PF08002
YP_880537.1	identified by match to protein family HMM PF01243
YP_880539.1	identified by match to protein family HMM PF00730
YP_880543.1	involved in the fifth mannose transfer of phosphatidylinositol mannoside synthesis
YP_880544.1	4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction
YP_880546.1	identified by match to protein family HMM PF00293
YP_880548.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580
YP_880549.1	identified by match to protein family HMM TIGR01660
YP_880550.1	identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684
YP_880551.1	identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351
YP_880552.1	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394
YP_880553.1	identified by match to protein family HMM PF00496
YP_880554.1	identified by match to protein family HMM PF00440
YP_880555.1	identified by match to protein family HMM PF02585
YP_880557.1	7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase; catalyzes radical-mediated transfer of hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione to form 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO); functions in F420 biosynthesis
YP_880561.1	identified by match to protein family HMM PF00037
YP_880562.1	catalyzes the formation of N-succinyl-LL-2,6-diaminopimelate from N-succinyl-L-2-amino-6-oxopimelate in lysine biosynthesis
YP_880563.1	identified by match to protein family HMM PF01336
YP_880565.1	identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801
YP_880568.1	identified by match to protein family HMM PF00823
YP_880569.1	identified by match to protein family HMM PF00823
YP_880570.1	identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455
YP_880571.1	ATP sulfurylase; ATPS; converts ATP and sulfate to 5'phosphosulfate and pyrophosphate; in some organisms this enzyme is involved in the incorporation of inorganic sulfate while in others it is involved in the production of ATP in the reverse direction; the enzyme from Thermus thermophilus is dimeric and binds a zinc ion that is coordinated by cysteine and histidine residues that are not found in all related proteins but is found in some thermophilic organisms
YP_880573.1	activates fatty acids by binding to coenzyme A
YP_880574.1	identified by match to protein family HMM PF00823
YP_880576.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR01236
YP_880577.1	identified by match to protein family HMM PF01619
YP_880578.1	identified by match to protein family HMM PF00440
YP_880581.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_880582.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771
YP_880583.1	identified by match to protein family HMM PF00067
YP_880584.1	identified by match to protein family HMM PF00171
YP_880585.1	identified by match to protein family HMM PF02515
YP_880586.1	identified by match to protein family HMM PF00561
YP_880587.1	activates fatty acids by binding to coenzyme A
YP_880588.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_880590.1	identified by match to protein family HMM PF00934
YP_880591.1	identified by match to protein family HMM PF00823
YP_880592.1	catalyzes the formation of succinate and diaminoheptanedioate from succinyldiaminoheptanedioate
YP_880593.1	identified by match to protein family HMM PF07721
YP_880594.1	identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730
YP_880595.1	activates fatty acids by binding to coenzyme A; may be involved in acyclic terpene utilization
YP_880596.1	identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496
YP_880597.1	identified by match to protein family HMM PF00535
YP_880599.1	identified by match to protein family HMM PF03352; match to protein family HMM TIGR00624
YP_880601.1	identified by match to protein family HMM PF00534; match to protein family HMM TIGR02149
YP_880602.1	catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate
YP_880603.1	identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976
YP_880604.1	identified by match to protein family HMM PF04140
YP_880606.1	identified by match to protein family HMM PF00005
YP_880607.1	identified by match to protein family HMM PF00440
YP_880608.1	identified by match to protein family HMM PF01596; match to protein family HMM PF05175
YP_880609.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937
YP_880610.1	identified by match to protein family HMM PF00089; match to protein family HMM PF00595
YP_880611.1	mediates the export of protein precursors bearing twin-arginine signal peptides
YP_880612.1	identified by match to protein family HMM PF01883
YP_880614.1	identified by match to protein family HMM PF06210
YP_880615.1	identified by match to protein family HMM PF00571; match to protein family HMM PF03448
YP_880618.1	identified by match to protein family HMM PF01547
YP_880619.1	identified by match to protein family HMM PF00528
YP_880620.1	identified by match to protein family HMM PF00528
YP_880621.1	identified by match to protein family HMM PF00005
YP_880623.1	identified by match to protein family HMM PF01544; match to protein family HMM TIGR00383
YP_880624.1	catalyzes the oxidation of malate to oxaloacetate
YP_880625.1	identified by match to protein family HMM PF00390; match to protein family HMM PF03949
YP_880626.1	identified by match to protein family HMM PF04069
YP_880627.1	identified by match to protein family HMM PF00106
YP_880628.1	identified by match to protein family HMM PF00106
YP_880630.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_880632.1	identified by match to protein family HMM PF00067
YP_880634.1	identified by match to protein family HMM PF00106
YP_880635.1	identified by match to protein family HMM PF02627
YP_880636.1	identified by match to protein family HMM PF00106
YP_880638.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_880640.1	identified by match to protein family HMM PF00067
YP_880641.1	identified by match to protein family HMM PF03447
YP_880643.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880
YP_880644.1	identified by match to protein family HMM PF01757
YP_880645.1	identified by match to protein family HMM PF00440
YP_880646.1	identified by match to protein family HMM PF00067
YP_880647.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913
YP_880648.1	identified by match to protein family HMM PF07690
YP_880649.1	identified by match to protein family HMM PF03167
YP_880650.1	identified by match to protein family HMM PF01494
YP_880651.1	identified by match to protein family HMM PF00296
YP_880652.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_880654.1	identified by match to protein family HMM PF01230
YP_880655.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_880657.1	identified by match to protein family HMM PF00211
YP_880659.1	identified by match to protein family HMM PF00069
YP_880660.1	identified by match to protein family HMM PF00486; match to protein family HMM PF00498; match to protein family HMM PF03704
YP_880661.1	identified by match to protein family HMM PF05305
YP_880662.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_880663.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_880667.1	identified by match to protein family HMM PF00300
YP_880668.1	identified by match to protein family HMM PF02720
YP_880669.1	identified by match to protein family HMM PF00149
YP_880671.1	identified by match to protein family HMM PF00561
YP_880672.1	identified by match to protein family HMM PF00496
YP_880673.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727
YP_880674.1	identified by match to protein family HMM PF00528
YP_880675.1	identified by match to protein family HMM PF00528
YP_880676.1	identified by match to protein family HMM PF00484
YP_880677.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369
YP_880678.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_880679.1	in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from EScherichia coli involved in cysteine biosynthesis
YP_880680.1	identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738
YP_880682.1	identified by match to protein family HMM PF00903
YP_880683.1	identified by match to protein family HMM PF00296
YP_880685.1	identified by match to protein family HMM PF02254; match to protein family HMM PF07885
YP_880686.1	identified by match to protein family HMM PF02136
YP_880687.1	identified by match to protein family HMM PF00293
YP_880690.1	identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026
YP_880693.1	identified by similarity to RF:NP_855753.1
YP_880694.1	identified by match to protein family HMM PF00872
YP_880696.1	identified by match to protein family HMM PF00665
YP_880697.1	identified by match to protein family HMM PF01527
YP_880700.1	identified by match to protein family HMM PF00872
YP_880702.1	identified by match to protein family HMM PF00004
YP_880705.1	identified by match to protein family HMM PF00155
YP_880706.1	identified by match to protein family HMM PF00872
YP_880709.1	identified by match to protein family HMM PF06259
YP_880710.1	identified by match to protein family HMM PF00872
YP_880714.1	identified by match to protein family HMM PF01797
YP_880715.1	identified by match to protein family HMM PF00665
YP_880721.1	identified by similarity to RF:NP_855753.1
YP_880722.1	identified by match to protein family HMM PF01609
YP_880723.1	identified by match to protein family HMM PF00872
YP_880725.1	identified by match to protein family HMM PF00589
YP_880733.1	identified by match to protein family HMM PF00239
YP_880734.1	identified by match to protein family HMM PF01022
YP_880735.1	identified by match to protein family HMM PF00903
YP_880736.1	identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832
YP_880737.1	identified by match to protein family HMM PF01451
YP_880738.1	identified by match to protein family HMM PF01451
YP_880739.1	identified by match to protein family HMM PF00872
YP_880747.1	identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048
YP_880748.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_880749.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_880750.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate
YP_880752.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_880754.1	RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_880755.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_880756.1	identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536
YP_880757.1	identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057
YP_880758.1	identified by match to protein family HMM PF00953
YP_880760.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_880761.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_880762.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.
YP_880763.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_880764.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_880765.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_880766.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_880767.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_880769.1	identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636
YP_880770.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_880771.1	identified by match to protein family HMM PF01243
YP_880772.1	identified by match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589
YP_880773.1	identified by match to protein family HMM PF00165; match to protein family HMM PF00730; match to protein family HMM PF02805; match to protein family HMM PF06029
YP_880774.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_880775.1	identified by match to protein family HMM PF07690
YP_880776.1	identified by match to protein family HMM PF00211; match to protein family HMM PF00672
YP_880777.1	identified by match to protein family HMM PF01939
YP_880779.1	identified by match to protein family HMM PF00903; match to protein family HMM TIGR03081
YP_880780.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis
YP_880781.1	identified by match to protein family HMM PF00085
YP_880782.1	identified by match to protein family HMM PF00128
YP_880783.1	identified by match to protein family HMM PF00343; match to protein family HMM TIGR02094
YP_880784.1	identified by match to protein family HMM PF00270
YP_880785.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate
YP_880786.1	involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA
YP_880788.1	identified by match to protein family HMM PF03576
YP_880789.1	identified by match to protein family HMM PF01694
YP_880790.1	converts L-glutamate to D-glutamate, a component of peptidoglycan
YP_880791.1	identified by match to protein family HMM PF00753
YP_880792.1	RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs
YP_880793.1	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_880800.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF04954; match to protein family HMM PF08021
YP_880801.1	identified by match to protein family HMM PF00005
YP_880802.1	identified by match to protein family HMM PF01636
YP_880803.1	identified by match to protein family HMM PF01243
YP_880804.1	identified by match to protein family HMM PF00106
YP_880805.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_880806.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_880807.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_880809.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_880810.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_880812.1	identified by match to protein family HMM PF00501
YP_880813.1	identified by match to protein family HMM PF00501
YP_880814.1	identified by match to protein family HMM PF00501
YP_880815.1	identified by match to protein family HMM PF00378
YP_880816.1	identified by match to protein family HMM PF00378
YP_880817.1	identified by match to protein family HMM PF00378
YP_880819.1	identified by match to protein family HMM PF00378
YP_880820.1	identified by match to protein family HMM PF00440; match to protein family HMM PF02909
YP_880821.1	identified by match to protein family HMM PF00106
YP_880822.1	identified by match to protein family HMM PF00701
YP_880824.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_880825.1	identified by match to protein family HMM PF04909
YP_880826.1	activates fatty acids by binding to coenzyme A; in Mycobacterium may be involved in virulence
YP_880827.1	identified by match to protein family HMM PF04909
YP_880828.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02771
YP_880829.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_880830.1	identified by match to protein family HMM PF02803
YP_880831.1	identified by match to protein family HMM PF02515
YP_880832.1	identified by match to protein family HMM PF00067
YP_880833.1	identified by match to protein family HMM PF00106
YP_880834.1	activates fatty acids by binding to coenzyme A; in Mycobacterium may be involved in virulence
YP_880835.1	identified by match to protein family HMM PF03061
YP_880836.1	identified by match to protein family HMM PF00857
YP_880837.1	identified by match to protein family HMM PF00355
YP_880842.1	identified by match to protein family HMM PF01039
YP_880843.1	identified by match to protein family HMM PF00067
YP_880844.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_880845.1	identified by match to protein family HMM PF00440
YP_880847.1	identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062
YP_880848.1	identified by match to protein family HMM PF00107
YP_880849.1	identified by match to protein family HMM PF00067
YP_880850.1	identified by match to protein family HMM PF07859
YP_880852.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_880853.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_880854.1	identified by match to protein family HMM PF01740; match to protein family HMM PF02518; match to protein family HMM PF07228
YP_880856.1	identified by match to protein family HMM PF00174
YP_880859.1	identified by match to protein family HMM PF04909
YP_880860.1	identified by match to protein family HMM PF00440; match to protein family HMM PF03061; match to protein family HMM TIGR00369
YP_880861.1	identified by match to protein family HMM PF00501
YP_880862.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_880863.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_880864.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_880865.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_880867.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_880868.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_880869.1	identified by match to protein family HMM PF02515
YP_880871.1	identified by match to protein family HMM PF00067
YP_880872.1	identified by match to protein family HMM PF00355
YP_880873.1	identified by match to protein family HMM PF00501
YP_880876.1	identified by match to protein family HMM PF01575
YP_880877.1	identified by match to protein family HMM PF00171
YP_880879.1	identified by match to protein family HMM PF00355
YP_880880.1	identified by match to protein family HMM PF00376
YP_880881.1	identified by match to protein family HMM TIGR01409
YP_880884.1	identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801
YP_880885.1	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids
YP_880886.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687
YP_880887.1	identified by match to protein family HMM PF00578
YP_880892.1	identified by match to protein family HMM PF03176
YP_880894.1	identified by match to protein family HMM PF03734
YP_880896.1	3'-5' exoribonuclease specific for small oligoribonuclotides
YP_880897.1	identified by match to protein family HMM PF05872
YP_880898.1	identified by match to protein family HMM PF00106
YP_880899.1	identified by match to protein family HMM PF07690
YP_880901.1	identified by match to protein family HMM PF00440
YP_880902.1	identified by match to protein family HMM PF01039
YP_880903.1	identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786
YP_880904.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_880905.1	identified by match to protein family HMM PF01575
YP_880906.1	identified by match to protein family HMM PF03328
YP_880907.1	identified by match to protein family HMM PF00676
YP_880908.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_880909.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817
YP_880910.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_880912.1	identified by match to protein family HMM PF00665
YP_880914.1	identified by match to protein family HMM PF01083
YP_880916.1	identified by match to protein family HMM PF07859
YP_880917.1	identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946
YP_880918.1	identified by match to protein family HMM PF01553; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490
YP_880919.1	identified by match to protein family HMM PF01527
YP_880920.1	identified by match to protein family HMM PF00665
YP_880921.1	identified by match to protein family HMM PF05425
YP_880923.1	identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621
YP_880924.1	ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence
YP_880925.1	identified by match to protein family HMM PF05088
YP_880929.1	identified by match to protein family HMM PF00128
YP_880930.1	identified by match to protein family HMM PF01152
YP_880931.1	identified by match to protein family HMM PF01844
YP_880934.1	identified by match to protein family HMM PF01433; match to protein family HMM TIGR02412
YP_880935.1	identified by match to protein family HMM PF01323
YP_880936.1	catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity
YP_880937.1	identified by match to protein family HMM PF01149; match to protein family HMM PF06831
YP_880938.1	identified by similarity to PIR:JC2091; match to protein family HMM PF00144
YP_880939.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_880940.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_880941.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_880942.1	converts homocysteine and S-adenosyl-methionine to methionine and S-adenosyl-homocysteine or S-methyl-methionine and homocysteine to two methionines
YP_880943.1	binds and unfolds substrates as part of the ClpXP protease
YP_880944.1	identified by match to protein family HMM PF01855
YP_880945.1	catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin
YP_880946.1	MobA; links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide; involved in molybdenum cofactor biosynthesis
YP_880949.1	identified by match to protein family HMM PF06737
YP_880950.1	identified by match to protein family HMM PF03435
YP_880951.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_880952.1	identified by match to protein family HMM PF02875; match to protein family HMM TIGR01499
YP_880954.1	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate
YP_880955.1	identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757
YP_880956.1	identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061
YP_880957.1	involved in the peptidyltransferase reaction during translation
YP_880958.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_880959.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_880960.1	identified by match to protein family HMM PF00440
YP_880962.1	identified by match to protein family HMM PF02146
YP_880963.1	identified by match to protein family HMM PF00857
YP_880964.1	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_880966.1	identified by match to protein family HMM PF00694; match to protein family HMM TIGR02087
YP_880967.1	identified by match to protein family HMM PF00330; match to protein family HMM TIGR01343
YP_880968.1	identified by match to protein family HMM PF03972
YP_880969.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_880970.1	identified by match to protein family HMM PF00294
YP_880971.1	identified by match to protein family HMM PF00211; match to protein family HMM PF00672
YP_880972.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_880973.1	identified by match to protein family HMM PF07728
YP_880974.1	identified by match to protein family HMM PF05762
YP_880975.1	transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria
YP_880976.1	identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090
YP_880977.1	identified by match to protein family HMM PF00300
YP_880979.1	identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762
YP_880980.1	identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833
YP_880981.1	identified by match to protein family HMM PF05423
YP_880982.1	identified by match to protein family HMM PF01113
YP_880984.1	activates fatty acids by binding to coenzyme A
YP_880986.1	identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833
YP_880987.1	identified by match to protein family HMM PF00668
YP_880988.1	identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801
YP_880989.1	identified by match to protein family HMM PF01243
YP_880990.1	identified by match to protein family HMM PF00441
YP_880991.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_880992.1	identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426
YP_880993.1	identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360
YP_880994.1	identified by match to protein family HMM PF06144
YP_880995.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_880996.1	identified by match to protein family HMM PF04168
YP_880997.1	identified by match to protein family HMM PF01841
YP_880999.1	member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions
YP_881000.1	identified by match to protein family HMM PF00571
YP_881002.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_881004.1	identified by match to protein family HMM PF00723
YP_881006.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971
YP_881007.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139
YP_881008.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140
YP_881009.1	identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM TIGR00968
YP_881010.1	catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite
YP_881011.1	identified by match to protein family HMM PF01077; match to protein family HMM PF03460
YP_881013.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_881014.1	identified by match to protein family HMM PF05982
YP_881015.1	identified by match to protein family HMM PF00872
YP_881016.1	catalyzes conversion of chorismate to salicylate, in mycobactin siderophore construction; requires Mg(2+) for function
YP_881017.1	identified by match to protein family HMM PF03405
YP_881018.1	identified by match to protein family HMM PF00376
YP_881019.1	identified by match to protein family HMM PF01266
YP_881021.1	identified by match to protein family HMM PF00106
YP_881022.1	identified by match to protein family HMM PF07859
YP_881024.1	identified by match to protein family HMM PF01878
YP_881025.1	identified by match to protein family HMM PF00440
YP_881026.1	identified by match to protein family HMM PF00903
YP_881027.1	identified by match to protein family HMM PF01557
YP_881028.1	catalyzes the formation of 3-(2,3-dihydroxyphenyl)propionate from 3-(3-hydroxyphenyl)propionate
YP_881029.1	identified by match to protein family HMM PF00872
YP_881030.1	identified by match to protein family HMM PF01695
YP_881031.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_881032.1	identified by match to protein family HMM PF00106
YP_881033.1	identified by match to protein family HMM PF00106
YP_881034.1	identified by match to protein family HMM PF00378
YP_881035.1	identified by match to protein family HMM PF00106
YP_881036.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_881037.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771
YP_881038.1	identified by match to protein family HMM PF00106
YP_881040.1	identified by match to protein family HMM PF02803
YP_881041.1	identified by match to protein family HMM PF00378
YP_881042.1	identified by match to protein family HMM PF03061
YP_881043.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369
YP_881044.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_881045.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_881046.1	identified by match to protein family HMM PF00441
YP_881047.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_881048.1	identified by match to protein family HMM PF00171
YP_881049.1	identified by match to protein family HMM PF02515
YP_881052.1	identified by match to protein family HMM PF00106
YP_881053.1	identified by match to protein family HMM PF01113
YP_881055.1	identified by match to protein family HMM PF00106
YP_881056.1	identified by match to protein family HMM PF00106
YP_881058.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771
YP_881060.1	identified by match to protein family HMM PF04909
YP_881061.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_881062.1	identified by match to protein family HMM PF00501
YP_881063.1	identified by match to protein family HMM PF00561
YP_881064.1	identified by match to protein family HMM PF00067
YP_881066.1	identified by match to protein family HMM PF00501
YP_881068.1	identified by match to protein family HMM PF00561
YP_881069.1	identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946
YP_881070.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993
YP_881071.1	identified by match to protein family HMM PF00378
YP_881072.1	identified by match to protein family HMM PF05368
YP_881073.1	identified by match to protein family HMM PF04909
YP_881074.1	identified by match to protein family HMM PF00440
YP_881077.1	identified by match to protein family HMM PF00872
YP_881079.1	identified by match to protein family HMM PF00355
YP_881080.1	identified by match to protein family HMM PF00440
YP_881081.1	identified by match to protein family HMM PF00355
YP_881083.1	identified by match to protein family HMM PF01796
YP_881084.1	identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930
YP_881085.1	identified by match to protein family HMM PF01575
YP_881087.1	identified by match to protein family HMM PF00501
YP_881089.1	identified by match to protein family HMM PF05305
YP_881092.1	identified by match to protein family HMM PF00665
YP_881094.1	identified by match to protein family HMM PF04909
YP_881097.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_881098.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771
YP_881099.1	identified by match to protein family HMM PF00441
YP_881100.1	identified by match to protein family HMM PF00501
YP_881101.1	identified by match to protein family HMM PF00106
YP_881103.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_881104.1	identified by match to protein family HMM PF00378
YP_881107.1	identified by match to protein family HMM PF01527
YP_881108.1	identified by match to protein family HMM PF00665
YP_881109.1	identified by match to protein family HMM PF00296
YP_881110.1	identified by match to protein family HMM PF01613
YP_881111.1	identified by match to protein family HMM PF00106
YP_881112.1	identified by match to protein family HMM PF02515
YP_881113.1	identified by match to protein family HMM PF02515
YP_881115.1	identified by match to protein family HMM PF02515
YP_881116.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_881117.1	identified by match to protein family HMM PF00171
YP_881118.1	identified by match to protein family HMM PF00378
YP_881119.1	identified by match to protein family HMM PF00501
YP_881120.1	identified by match to protein family HMM PF00866
YP_881121.1	identified by match to protein family HMM PF00355; match to protein family HMM PF00848
YP_881125.1	identified by match to protein family HMM PF00561
YP_881126.1	identified by match to protein family HMM PF01689; match to protein family HMM TIGR02312
YP_881127.1	identified by match to protein family HMM PF03328
YP_881128.1	identified by match to protein family HMM PF00296
YP_881129.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_881130.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_881132.1	identified by match to protein family HMM PF00501
YP_881133.1	identified by match to protein family HMM PF00106
YP_881134.1	identified by match to protein family HMM PF03061
YP_881135.1	identified by match to protein family HMM PF02515
YP_881136.1	identified by match to protein family HMM PF00440
YP_881137.1	identified by match to protein family HMM PF04909
YP_881139.1	identified by match to protein family HMM PF01796
YP_881141.1	identified by match to protein family HMM PF00106
YP_881142.1	identified by match to protein family HMM PF00171
YP_881146.1	identified by match to protein family HMM PF00872
YP_881148.1	identified by match to protein family HMM PF03446; match to protein family HMM PF03807
YP_881149.1	identified by match to protein family HMM PF01636
YP_881150.1	identified by match to protein family HMM PF00296
YP_881151.1	identified by match to protein family HMM PF00440
YP_881152.1	identified by match to protein family HMM PF04909
YP_881153.1	identified by match to protein family HMM PF00510
YP_881156.1	identified by match to protein family HMM PF00106
YP_881158.1	identified by match to protein family HMM PF00378
YP_881159.1	identified by match to protein family HMM PF00067
YP_881160.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_881162.1	identified by match to protein family HMM PF00107
YP_881163.1	identified by match to protein family HMM PF00171
YP_881165.1	identified by match to protein family HMM PF01575
YP_881166.1	identified by match to protein family HMM PF00440
YP_881167.1	catalyzes the cleavage of 3-(2,3-dihydroxyphenyl) propionate into 2-hydroxy-6-oxonona-2,4-diene-1,9-dioate; part of the 3-phenylpropionic acid degradation pathway; member of the protocatechuate 4,5-dioxygenase family
YP_881169.1	identified by match to protein family HMM PF00067
YP_881171.1	identified by match to protein family HMM PF00440
YP_881172.1	identified by match to protein family HMM PF00067
YP_881173.1	identified by match to protein family HMM PF00296
YP_881174.1	identified by match to protein family HMM PF00391
YP_881176.1	identified by match to protein family HMM PF00501
YP_881177.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_881179.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_881181.1	identified by match to protein family HMM PF00881
YP_881182.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_881184.1	identified by match to protein family HMM PF01796
YP_881186.1	identified by match to protein family HMM PF01796
YP_881187.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_881191.1	identified by match to protein family HMM PF01609
YP_881193.1	identified by match to protein family HMM PF00872
YP_881195.1	identified by match to protein family HMM PF00106
YP_881196.1	identified by match to protein family HMM PF00440
YP_881198.1	identified by match to protein family HMM PF01965
YP_881203.1	identified by match to protein family HMM PF01272
YP_881208.1	identified by match to protein family HMM PF00872
YP_881209.1	identified by match to protein family HMM PF00011
YP_881212.1	identified by match to protein family HMM PF00376
YP_881214.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_881217.1	identified by match to protein family HMM PF00823
YP_881221.1	identified by match to protein family HMM PF00665
YP_881223.1	identified by match to protein family HMM PF01061
YP_881224.1	identified by match to protein family HMM PF00668
YP_881225.1	identified by match to protein family HMM PF00823
YP_881226.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive
YP_881227.1	identified by match to protein family HMM PF00501
YP_881228.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733
YP_881229.1	identified by match to protein family HMM PF00975
YP_881230.1	identified by match to protein family HMM PF00109; match to protein family HMM PF02801
YP_881231.1	identified by match to protein family HMM PF00106; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370
YP_881232.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733
YP_881233.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733
YP_881235.1	identified by match to protein family HMM PF03621
YP_881238.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937
YP_881239.1	identified by match to protein family HMM PF02627
YP_881241.1	Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
YP_881242.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_881243.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_881244.1	identified by match to protein family HMM PF00013; match to protein family HMM PF02562
YP_881245.1	identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043
YP_881247.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_881248.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_881250.1	identified by match to protein family HMM PF01276; match to protein family HMM PF03711
YP_881251.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_881252.1	involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA
YP_881253.1	catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate
YP_881255.1	identified by match to protein family HMM PF01475
YP_881256.1	identified by match to protein family HMM PF01022
YP_881257.1	Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_881259.1	identified by match to protein family HMM PF04536
YP_881260.1	dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate
YP_881261.1	identified by match to protein family HMM PF00080
YP_881262.1	synthesizes RNA primers at the replication forks
YP_881264.1	identified by match to protein family HMM PF02426
YP_881266.1	identified by match to protein family HMM PF00296
YP_881268.1	identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172
YP_881269.1	identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139
YP_881272.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979
YP_881273.1	identified by match to protein family HMM PF03601
YP_881276.1	identified by match to protein family HMM PF02405
YP_881277.1	identified by match to protein family HMM PF02405
YP_881278.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_881279.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_881280.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_881281.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_881282.1	identified by match to protein family HMM PF02470
YP_881285.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_881290.1	identified by match to protein family HMM PF00872
YP_881291.1	identified by match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00384; match to protein family HMM PF00667; match to protein family HMM PF01568; match to protein family HMM PF04879
YP_881294.1	identified by match to protein family HMM PF07690
YP_881295.1	identified by match to protein family HMM PF00441; match to protein family HMM PF01756; match to protein family HMM PF02770
YP_881296.1	identified by match to protein family HMM PF01047
YP_881297.1	identified by match to protein family HMM PF00005
YP_881298.1	identified by match to protein family HMM PF02361
YP_881299.1	identified by match to protein family HMM PF01037
YP_881300.1	identified by match to protein family HMM PF02274
YP_881301.1	identified by match to protein family HMM PF00202; match to protein family HMM TIGR01885
YP_881302.1	identified by match to protein family HMM PF00324
YP_881303.1	identified by match to protein family HMM PF01547
YP_881304.1	identified by match to protein family HMM PF00528
YP_881305.1	identified by match to protein family HMM PF00528
YP_881306.1	identified by match to protein family HMM PF01523
YP_881311.1	identified by match to protein family HMM PF00440
YP_881312.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_881313.1	identified by match to protein family HMM PF00872
YP_881314.1	identified by match to protein family HMM PF00171
YP_881316.1	identified by match to protein family HMM PF07690
YP_881319.1	identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07228
YP_881320.1	identified by match to protein family HMM PF01740
YP_881321.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_881322.1	identified by match to protein family HMM PF01209
YP_881324.1	identified by match to protein family HMM PF01988
YP_881326.1	identified by match to protein family HMM PF00501
YP_881327.1	identified by match to protein family HMM TIGR03083; match to protein family HMM TIGR03085
YP_881328.1	molecular chaperone
YP_881330.1	identified by match to protein family HMM PF00296
YP_881331.1	identified by match to protein family HMM PF01566
YP_881332.1	identified by match to protein family HMM PF00571; match to protein family HMM PF03448
YP_881334.1	identified by match to protein family HMM PF00903
YP_881337.1	identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930
YP_881339.1	identified by similarity to SP:P22255; match to protein family HMM PF00459
YP_881340.1	identified by match to protein family HMM PF00561
YP_881342.1	identified by match to protein family HMM PF00155
YP_881343.1	identified by match to protein family HMM PF00296
YP_881348.1	identified by match to protein family HMM PF00067
YP_881349.1	identified by match to protein family HMM PF00561
YP_881352.1	identified by match to protein family HMM PF00581
YP_881353.1	identified by match to protein family HMM PF00534
YP_881355.1	identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831
YP_881357.1	identified by match to protein family HMM PF07859
YP_881358.1	identified by match to protein family HMM PF05534
YP_881359.1	identified by match to protein family HMM PF00872
YP_881360.1	identified by match to protein family HMM PF00037
YP_881361.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_881362.1	identified by match to protein family HMM PF01903
YP_881363.1	catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite
YP_881364.1	identified by match to protein family HMM PF01077; match to protein family HMM PF03460
YP_881366.1	identified by match to protein family HMM PF00067
YP_881367.1	identified by match to protein family HMM PF00440
YP_881368.1	identified by match to protein family HMM PF00069
YP_881369.1	identified by match to protein family HMM PF00067
YP_881370.1	identified by match to protein family HMM PF01527
YP_881371.1	identified by match to protein family HMM PF00665
YP_881374.1	identified by match to protein family HMM PF02627
YP_881375.1	identified by match to protein family HMM PF02627
YP_881376.1	identified by match to protein family HMM PF00440
YP_881377.1	identified by match to protein family HMM PF08028
YP_881378.1	identified by match to protein family HMM PF01520
YP_881379.1	identified by match to protein family HMM PF01083
YP_881381.1	identified by match to protein family HMM PF01266
YP_881383.1	identified by match to protein family HMM PF07366
YP_881384.1	identified by match to protein family HMM PF00067
YP_881386.1	identified by match to protein family HMM PF01113
YP_881390.1	identified by match to protein family HMM PF00753
YP_881391.1	identified by match to protein family HMM PF02390
YP_881392.1	identified by match to protein family HMM PF00144
YP_881394.1	involved in the biosynthesis of phosphatidylinositol mannosides (PIMs); the enzyme from Mycobacterium tuberculosis can phosphorylate a variety of amphipathic lipids
YP_881395.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913
YP_881396.1	identified by match to protein family HMM PF00440
YP_881397.1	identified by match to protein family HMM PF01266
YP_881398.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01494
YP_881399.1	identified by match to protein family HMM PF01039
YP_881400.2	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short chain unsaturated acyl-ACP
YP_881401.2	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short chain unsaturated acyl-ACP
YP_881402.1	carries the fatty acid chain in fatty acid biosynthesis
YP_881405.1	E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC
YP_881408.1	identified by match to protein family HMM PF00578
YP_881409.1	identified by match to protein family HMM PF01955
YP_881410.1	identified by match to protein family HMM PF00561; match to protein family HMM PF06441
YP_881412.1	CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
YP_881414.1	identified by match to protein family HMM PF01451
YP_881415.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549
YP_881416.1	identified by match to protein family HMM PF00155
YP_881417.1	identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486
YP_881418.1	identified by match to protein family HMM PF02591
YP_881419.1	identified by match to protein family HMM PF00075; match to protein family HMM PF00300
YP_881420.1	identified by match to protein family HMM PF00067
YP_881421.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_881422.1	identified by match to protein family HMM PF01739; match to protein family HMM PF03848; match to protein family HMM PF05724
YP_881424.1	identified by match to protein family HMM PF00589
YP_881427.1	identified by match to protein family HMM PF00872
YP_881429.1	identified by match to protein family HMM PF00872
YP_881430.1	identified by match to protein family HMM PF07669
YP_881432.1	identified by match to protein family HMM PF00872
YP_881433.1	identified by match to protein family HMM PF00872
YP_881434.1	identified by match to protein family HMM PF00872
YP_881435.1	identified by match to protein family HMM PF00872
YP_881436.1	identified by match to protein family HMM PF00872
YP_881439.1	identified by match to protein family HMM PF00872
YP_881440.1	identified by match to protein family HMM PF01928; match to protein family HMM PF05235
YP_881443.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_881444.1	identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946
YP_881445.1	identified by match to protein family HMM PF00561
YP_881447.1	identified by match to protein family HMM PF00561
YP_881448.1	identified by similarity to SP:P12425; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653
YP_881449.1	catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme
YP_881450.1	identified by match to protein family HMM PF03061
YP_881451.1	identified by match to protein family HMM PF00296
YP_881462.1	identified by match to protein family HMM PF00872
YP_881465.1	identified by match to protein family HMM PF01527
YP_881466.1	identified by match to protein family HMM PF00665
YP_881469.1	identified by match to protein family HMM PF01381
YP_881470.1	identified by match to protein family HMM PF00589
YP_881471.1	identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653
YP_881472.1	identified by match to protein family HMM PF06271
YP_881474.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_881475.1	lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein
YP_881476.1	identified by match to protein family HMM PF01370; match to protein family HMM TIGR01777
YP_881477.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR02927
YP_881479.1	identified by match to protein family HMM PF00106; match to protein family HMM PF00561
YP_881483.1	catalyzes the removal of N-terminal amino acids preferably leucine from various peptides
YP_881484.1	catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein
YP_881485.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_881486.1	catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole
YP_881487.1	catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole
YP_881488.1	identified by match to protein family HMM PF02283
YP_881490.1	identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045
YP_881491.1	identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049
YP_881493.1	identified by match to protein family HMM PF00294
YP_881494.1	identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536
YP_881495.1	identified by match to protein family HMM PF00116
YP_881500.1	petB; identified by match to protein family HMM PF00033
YP_881501.1	identified by match to protein family HMM PF00355
YP_881502.1	identified by match to protein family HMM PF00034
YP_881503.1	identified by match to protein family HMM PF00510
YP_881504.1	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_881505.1	contains 3'-5'exonuclease domain
YP_881508.1	identified by match to protein family HMM PF00877
YP_881510.1	identified by match to protein family HMM PF00534
YP_881511.1	identified by match to protein family HMM PF00501
YP_881513.1	identified by match to protein family HMM PF03364
YP_881514.1	identified by match to protein family HMM PF02374
YP_881516.1	identified by match to protein family HMM PF01553
YP_881520.1	identified by match to protein family HMM PF01474; match to protein family HMM TIGR01358
YP_881522.1	identified by match to protein family HMM PF00069; match to protein family HMM PF01163
YP_881525.1	identified by match to protein family HMM PF00348
YP_881528.1	identified by match to protein family HMM PF00583
YP_881531.1	MraZ; UPF0040; crystal structure shows similarity to AbrB
YP_881532.1	identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006
YP_881534.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_881535.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_881536.1	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143
YP_881537.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_881538.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_881539.1	identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614
YP_881540.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_881541.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_881542.1	identified by match to protein family HMM PF03799
YP_881544.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_881545.1	identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726
YP_881546.1	identified by match to protein family HMM TIGR00044
YP_881547.1	identified by match to protein family HMM PF04472
YP_881549.1	identified by match to protein family HMM PF05103
YP_881551.1	identified by match to protein family HMM PF00156
YP_881553.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687
YP_881554.1	identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481
YP_881555.1	identified by match to protein family HMM PF02720
YP_881556.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors
YP_881560.1	identified by match to protein family HMM PF00300
YP_881563.1	identified by match to protein family HMM PF00459
YP_881564.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_881565.1	identified by match to protein family HMM PF00196
YP_881566.1	identified by match to protein family HMM PF00872
YP_881567.1	identified by match to protein family HMM PF00196; match to protein family HMM PF07721
YP_881568.1	identified by match to protein family HMM PF02775; match to protein family HMM PF02776
YP_881569.1	identified by match to protein family HMM PF03621
YP_881570.1	identified by match to protein family HMM PF07690
YP_881572.1	identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801
YP_881573.1	identified by match to protein family HMM PF00067
YP_881575.1	identified by match to protein family HMM PF00970; match to protein family HMM PF04954; match to protein family HMM PF08021
YP_881577.1	identified by match to protein family HMM PF00106
YP_881578.1	identified by match to protein family HMM PF00665
YP_881579.1	identified by match to protein family HMM PF01908
YP_881580.1	one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity
YP_881581.1	identified by match to protein family HMM PF00665
YP_881583.1	identified by match to protein family HMM PF02470
YP_881584.1	identified by match to protein family HMM PF02470
YP_881585.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_881586.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_881587.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_881588.1	identified by match to protein family HMM PF02470
YP_881589.1	identified by match to protein family HMM PF02405
YP_881590.1	identified by match to protein family HMM PF02405
YP_881591.1	identified by match to protein family HMM PF00440
YP_881592.1	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis
YP_881593.1	long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors
YP_881595.1	Enables the enzymatic reduction of mercuric ions to elemental mercury
YP_881598.1	identified by match to protein family HMM PF04456
YP_881600.1	identified by match to protein family HMM PF00004
YP_881602.1	identified by match to protein family HMM PF05639
YP_881603.1	identified by match to protein family HMM PF00227
YP_881604.1	identified by match to protein family HMM PF00227
YP_881605.1	identified by match to protein family HMM PF03136; match to protein family HMM PF03316
YP_881608.1	TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes
YP_881609.1	identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945
YP_881611.1	identified by match to protein family HMM PF01367; match to protein family HMM PF02739
YP_881612.1	identified by match to protein family HMM PF00557
YP_881618.1	identified by match to protein family HMM PF01243
YP_881619.1	identified by match to protein family HMM PF00106
YP_881620.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469
YP_881621.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465
YP_881622.1	CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6
YP_881623.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate
YP_881625.1	identified by match to protein family HMM PF00823
YP_881626.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466; match to protein family HMM TIGR01467
YP_881627.1	identified by match to protein family HMM PF02570
YP_881628.1	identified by match to protein family HMM PF00528
YP_881629.1	identified by match to protein family HMM PF00005
YP_881630.1	identified by match to protein family HMM TIGR01728
YP_881632.1	with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism
YP_881633.1	identified by match to protein family HMM PF00106
YP_881634.1	identified by match to protein family HMM PF00440
YP_881636.1	identified by match to protein family HMM PF01243
YP_881637.1	identified by match to protein family HMM PF01738
YP_881638.1	F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein
YP_881639.1	identified by match to protein family HMM PF07969
YP_881643.1	identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801
YP_881644.1	identified by match to protein family HMM PF00391; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993
YP_881647.1	identified by match to protein family HMM PF07728
YP_881651.1	identified by match to protein family HMM PF00440
YP_881652.1	identified by match to protein family HMM PF00106
YP_881655.1	identified by match to protein family HMM PF00440
YP_881656.1	identified by match to protein family HMM PF00067
YP_881658.1	identified by match to protein family HMM PF00135
YP_881659.1	identified by match to protein family HMM PF01636
YP_881660.1	identified by match to protein family HMM PF01202; match to protein family HMM TIGR01313
YP_881663.1	identified by match to protein family HMM PF07681
YP_881664.1	identified by match to protein family HMM PF00857
YP_881665.1	identified by match to protein family HMM PF02136
YP_881667.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937
YP_881668.1	identified by match to protein family HMM PF01547
YP_881669.1	identified by match to protein family HMM PF00528
YP_881670.1	identified by match to protein family HMM PF00528
YP_881671.1	identified by match to protein family HMM PF00005
YP_881672.1	identified by match to protein family HMM PF01734
YP_881675.1	identified by match to protein family HMM PF03239
YP_881676.1	identified by match to protein family HMM PF04302
YP_881677.1	identified by match to protein family HMM PF04261; match to protein family HMM TIGR01412; match to protein family HMM TIGR01413
YP_881678.1	identified by match to protein family HMM PF02566
YP_881680.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937
YP_881682.1	identified by match to protein family HMM PF01226
YP_881684.1	identified by match to protein family HMM PF00665
YP_881686.1	identified by match to protein family HMM PF00582
YP_881688.1	identified by match to protein family HMM PF00248
YP_881689.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_881692.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_881698.1	identified by match to protein family HMM PF00582
YP_881699.1	identified by match to protein family HMM PF00582
YP_881700.1	identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_881701.1	identified by match to protein family HMM PF00106
YP_881702.1	identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833
YP_881703.1	identified by match to protein family HMM PF05423
YP_881704.1	identified by match to protein family HMM PF00440
YP_881705.1	identified by match to protein family HMM PF07859
YP_881706.1	identified by match to protein family HMM PF00823
YP_881707.1	identified by match to protein family HMM PF04909
YP_881708.1	identified by match to protein family HMM PF00903
YP_881709.1	identified by match to protein family HMM PF00561
YP_881710.1	identified by match to protein family HMM PF01494
YP_881711.1	identified by match to protein family HMM PF00872
YP_881713.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722
YP_881718.1	identified by match to protein family HMM PF00872
YP_881719.1	identified by match to protein family HMM PF00440
YP_881720.1	identified by match to protein family HMM PF00665
YP_881721.1	identified by match to protein family HMM PF01695
YP_881722.1	identified by match to protein family HMM PF02405
YP_881723.1	identified by match to protein family HMM PF02405
YP_881724.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_881725.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_881726.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_881727.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_881728.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_881729.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_881732.1	identified by match to protein family HMM PF02551
YP_881733.1	identified by match to protein family HMM PF02515
YP_881734.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_881736.1	identified by match to protein family HMM PF00355
YP_881737.1	identified by match to protein family HMM PF00440
YP_881739.1	activates fatty acids by binding to coenzyme A
YP_881740.1	identified by match to protein family HMM PF00067
YP_881741.1	identified by match to protein family HMM PF00106
YP_881742.1	identified by match to protein family HMM PF00106
YP_881743.1	identified by match to protein family HMM PF00378
YP_881744.1	identified by match to protein family HMM PF00106
YP_881745.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_881746.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_881747.1	identified by match to protein family HMM PF00106
YP_881749.1	identified by match to protein family HMM PF02803
YP_881750.1	identified by match to protein family HMM PF00378
YP_881751.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369
YP_881752.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_881753.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_881754.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_881755.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_881756.1	identified by match to protein family HMM PF00171
YP_881757.1	identified by match to protein family HMM PF02515
YP_881758.1	identified by match to protein family HMM PF00903
YP_881759.1	identified by match to protein family HMM PF00106
YP_881761.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_881762.1	identified by match to protein family HMM PF00501
YP_881763.1	identified by match to protein family HMM PF00067
YP_881765.1	identified by match to protein family HMM PF00501
YP_881767.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_881768.1	identified by match to protein family HMM PF04909
YP_881769.1	identified by match to protein family HMM PF00440
YP_881770.1	identified by match to protein family HMM PF01243
YP_881775.1	identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930
YP_881776.1	identified by match to protein family HMM PF01575
YP_881778.1	identified by match to protein family HMM PF00501
YP_881779.1	identified by match to protein family HMM PF00440
YP_881781.1	identified by match to protein family HMM PF04909
YP_881782.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_881784.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_881785.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771
YP_881786.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_881787.1	identified by match to protein family HMM PF00501
YP_881788.1	identified by match to protein family HMM PF00378
YP_881789.1	identified by match to protein family HMM PF00106
YP_881791.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_881792.1	identified by match to protein family HMM PF00378
YP_881793.1	identified by match to protein family HMM PF00561
YP_881795.1	identified by match to protein family HMM PF00561
YP_881796.1	identified by match to protein family HMM PF00296
YP_881797.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_881798.1	identified by match to protein family HMM PF01613
YP_881799.1	identified by match to protein family HMM PF00171
YP_881800.1	identified by match to protein family HMM PF00378
YP_881801.1	identified by match to protein family HMM PF00501
YP_881802.1	identified by match to protein family HMM PF00866
YP_881803.1	identified by match to protein family HMM PF00355; match to protein family HMM PF00848
YP_881807.1	identified by match to protein family HMM PF00561
YP_881808.1	identified by match to protein family HMM PF01689; match to protein family HMM TIGR02312
YP_881809.1	identified by match to protein family HMM PF03328
YP_881810.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_881811.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_881813.1	identified by match to protein family HMM PF00501
YP_881814.1	identified by match to protein family HMM PF00106
YP_881815.1	identified by match to protein family HMM PF03061
YP_881816.1	identified by match to protein family HMM PF02515
YP_881817.1	identified by match to protein family HMM PF00440
YP_881819.1	identified by match to protein family HMM PF00872
YP_881820.1	identified by match to protein family HMM PF04909
YP_881822.1	identified by match to protein family HMM PF01796
YP_881823.1	identified by match to protein family HMM PF00440
YP_881825.1	identified by match to protein family HMM PF00067
YP_881826.1	identified by match to protein family HMM PF03446
YP_881827.1	identified by match to protein family HMM PF00106
YP_881828.1	identified by match to protein family HMM PF00501
YP_881830.1	identified by match to protein family HMM PF00106
YP_881831.1	identified by match to protein family HMM PF01796
YP_881832.1	identified by match to protein family HMM PF00378
YP_881833.1	identified by match to protein family HMM PF00067
YP_881834.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_881837.1	identified by match to protein family HMM PF00107
YP_881838.1	identified by match to protein family HMM PF00171
YP_881840.1	identified by match to protein family HMM PF01575
YP_881841.1	identified by match to protein family HMM PF00440
YP_881842.1	identified by match to protein family HMM PF02515
YP_881843.1	identified by match to protein family HMM PF02515
YP_881844.1	catalyzes the cleavage of 3-(2,3-dihydroxyphenyl) propionate into 2-hydroxy-6-oxonona-2,4-diene-1,9-dioate; part of the 3-phenylpropionic acid degradation pathway; member of the protocatechuate 4,5-dioxygenase family
YP_881848.1	identified by match to protein family HMM PF00440
YP_881849.1	identified by match to protein family HMM PF00067
YP_881850.1	identified by match to protein family HMM PF00296
YP_881852.1	identified by match to protein family HMM PF00881
YP_881853.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_881856.1	identified by match to protein family HMM PF00106
YP_881859.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_881861.1	identified by match to protein family HMM PF00872
YP_881862.1	identified by match to protein family HMM PF00106
YP_881863.1	identified by match to protein family HMM PF00501
YP_881866.1	identified by match to protein family HMM PF00665
YP_881867.1	identified by match to protein family HMM PF01695
YP_881870.1	identified by match to protein family HMM PF00665
YP_881871.1	identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073
YP_881873.1	identified by match to protein family HMM PF00374
YP_881874.1	identified by match to protein family HMM PF01106
YP_881878.1	identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072
YP_881881.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493
YP_881882.1	identified by match to protein family HMM PF00665
YP_881883.1	identified by match to protein family HMM PF01695
YP_881886.1	identified by match to protein family HMM PF02551
YP_881888.1	identified by match to protein family HMM PF00665
YP_881889.1	identified by match to protein family HMM PF01527
YP_881891.1	identified by match to protein family HMM PF00106
YP_881892.1	identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737
YP_881893.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_881894.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_881895.1	identified by match to protein family HMM PF02515
YP_881896.1	identified by match to protein family HMM PF00440
YP_881897.1	identified by match to protein family HMM PF00561
YP_881898.1	identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277
YP_881899.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_881900.1	identified by match to protein family HMM PF00553
YP_881902.1	identified by match to protein family HMM PF00903
YP_881903.1	identified by match to protein family HMM PF05305
YP_881905.1	an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_881906.1	identified by match to protein family HMM PF00144
YP_881907.1	Required for the synthesis of the thiazole moiety
YP_881908.1	identified by match to protein family HMM PF00011
YP_881909.1	identified by match to protein family HMM PF00376
YP_881910.1	identified by match to protein family HMM PF00011
YP_881911.1	identified by match to protein family HMM PF00226
YP_881912.1	identified by match to protein family HMM PF00668
YP_881914.1	identified by match to protein family HMM PF00254
YP_881915.1	identified by match to protein family HMM PF00106
YP_881918.1	identified by match to protein family HMM PF05343; match to protein family HMM TIGR03106
YP_881919.1	identified by match to protein family HMM PF03328
YP_881921.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_881922.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_881925.1	identified by match to protein family HMM PF01494
YP_881926.1	identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717; match to protein family HMM TIGR01967
YP_881927.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_881928.1	identified by match to protein family HMM PF03631
YP_881929.1	identified by match to protein family HMM PF00378
YP_881930.1	identified by match to protein family HMM PF01083
YP_881933.1	identified by match to protein family HMM PF03473
YP_881935.1	identified by match to protein family HMM PF00823
YP_881936.1	identified by match to protein family HMM PF03033
YP_881938.1	identified by match to protein family HMM PF00355; match to protein family HMM PF01266
YP_881940.1	identified by match to protein family HMM PF03734
YP_881941.1	identified by match to protein family HMM PF01475
YP_881942.1	identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198
YP_881944.1	identified by match to protein family HMM PF00534
YP_881948.1	identified by match to protein family HMM PF01083
YP_881950.1	identified by match to protein family HMM PF00722; match to protein family HMM TIGR01409
YP_881951.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_881954.1	identified by match to protein family HMM PF00171
YP_881955.1	identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_881956.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_881958.1	identified by match to protein family HMM PF03060
YP_881959.1	antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein
YP_881961.1	identified by match to protein family HMM PF01965
YP_881963.1	identified by match to protein family HMM PF00106
YP_881965.2	activates fatty acids by binding to coenzyme A
YP_881967.1	identified by match to protein family HMM PF00296
YP_881969.1	identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346
YP_881970.1	identified by match to protein family HMM PF00753
YP_881971.1	identified by match to protein family HMM PF01022
YP_881973.1	similar to streptomyces cyclase/dehydrase; identified by match to protein family HMM PF03364
YP_881974.1	identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481
YP_881975.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01593
YP_881976.1	identified by match to protein family HMM PF00440
YP_881977.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_881978.1	identified by match to protein family HMM PF01361
YP_881979.1	identified by similarity to GB:AAF98273.1; match to protein family HMM PF03060
YP_881983.1	identified by match to protein family HMM PF01266
YP_881984.1	identified by match to protein family HMM PF04020
YP_881985.1	identified by match to protein family HMM PF04909
YP_881986.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00891
YP_881987.1	identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200
YP_881988.1	identified by match to protein family HMM PF01910; match to protein family HMM TIGR00106
YP_881989.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine
YP_881990.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_881991.1	identified by match to protein family HMM PF00107
YP_881993.1	identified by match to protein family HMM PF02720
YP_881994.1	identified by match to protein family HMM PF03060
YP_881999.1	identified by match to protein family HMM PF00107
YP_882003.1	identified by match to protein family HMM PF00756
YP_882004.1	catalyzes the interconversion of chorismate to prephenate
YP_882005.1	identified by match to protein family HMM PF06737
YP_882006.1	similar to streptomyces cyclase/dehydrase; identified by match to protein family HMM PF03364
YP_882007.1	identified by match to protein family HMM PF00106
YP_882009.1	identified by match to protein family HMM PF00067
YP_882010.1	identified by match to protein family HMM PF07366; match to protein family HMM PF07858
YP_882013.1	identified by match to protein family HMM PF00872
YP_882014.1	identified by match to protein family HMM PF00872
YP_882015.1	identified by match to protein family HMM PF04909
YP_882016.1	identified by match to protein family HMM PF00120
YP_882017.1	identified by match to protein family HMM PF00296
YP_882018.1	identified by match to protein family HMM PF02627
YP_882019.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_882020.1	identified by match to protein family HMM PF00210; match to protein family HMM TIGR00754
YP_882021.1	identified by match to protein family HMM PF04324
YP_882022.1	identified by match to protein family HMM PF00378
YP_882023.1	identified by match to protein family HMM PF01243
YP_882025.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_882026.1	identified by match to protein family HMM PF00578
YP_882027.1	identified by match to protein family HMM PF02627; match to protein family HMM TIGR00777; match to protein family HMM TIGR00778
YP_882028.1	identified by match to protein family HMM PF00128
YP_882030.1	identified by match to protein family HMM PF01070
YP_882031.1	identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026
YP_882034.1	identified by match to protein family HMM PF01904
YP_882035.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_882036.1	identified by match to protein family HMM PF01370
YP_882037.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_882038.1	identified by match to protein family HMM PF02515
YP_882039.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_882040.1	identified by match to protein family HMM PF00106
YP_882041.1	identified by match to protein family HMM PF03894
YP_882042.1	identified by match to protein family HMM PF02517
YP_882043.1	identified by match to protein family HMM PF00107; match to protein family HMM TIGR02822
YP_882044.1	identified by match to protein family HMM PF04226
YP_882045.1	identified by match to protein family HMM PF07174
YP_882046.1	identified by match to protein family HMM PF00005; match to protein family HMM PF03459
YP_882047.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01581; match to protein family HMM TIGR02141
YP_882049.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256
YP_882050.1	identified by match to protein family HMM PF00106
YP_882051.1	identified by match to protein family HMM PF00296
YP_882053.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_882054.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369
YP_882055.1	identified by match to protein family HMM PF03965
YP_882056.1	identified by match to protein family HMM PF01435; match to protein family HMM PF05569
YP_882057.1	catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate
YP_882058.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_882059.1	carries the fatty acid chain in fatty acid biosynthesis
YP_882060.1	converts medium- to long-chain aliphatic fatty acids into acyl adenylate; involved in mycobactin synthesis
YP_882061.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_882064.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_882065.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595
YP_882066.1	catalyzes the formation of malate from glyoxylate and acetyl-CoA
YP_882069.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00440
YP_882070.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine
YP_882072.1	identified by match to protein family HMM PF02577
YP_882073.1	identified by match to protein family HMM PF00376
YP_882074.1	identified by match to protein family HMM PF00498
YP_882075.1	part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor
YP_882076.1	identified by match to protein family HMM PF05949
YP_882077.1	identified by match to protein family HMM PF06947
YP_882078.1	identified by match to protein family HMM PF05949
YP_882079.1	identified by match to protein family HMM PF01066
YP_882080.1	SecA2; functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond to SecA2; which is non-essential and seems to play a role in secretion of a subset of proteins
YP_882081.1	identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776
YP_882082.1	identified by match to protein family HMM PF00005; match to protein family HMM PF06472
YP_882083.1	identified by match to protein family HMM PF00890; match to protein family HMM PF01266
YP_882085.1	identified by match to protein family HMM PF00440
YP_882086.1	identified by match to protein family HMM TIGR00026
YP_882089.1	identified by match to protein family HMM PF02308
YP_882090.1	identified by match to protein family HMM PF05305
YP_882091.1	identified by match to protein family HMM PF00823
YP_882092.1	identified by match to protein family HMM PF00823
YP_882093.1	identified by match to protein family HMM PF05305
YP_882094.1	identified by match to protein family HMM PF05305
YP_882095.1	identified by match to protein family HMM PF00823
YP_882096.1	identified by match to protein family HMM PF00823
YP_882097.1	identified by match to protein family HMM PF00872
YP_882098.1	identified by match to protein family HMM PF05305
YP_882099.1	identified by match to protein family HMM PF00823
YP_882100.1	identified by match to protein family HMM PF00823
YP_882101.1	identified by match to protein family HMM PF00934
YP_882102.1	identified by match to protein family HMM PF00004; match to protein family HMM PF07719
YP_882104.1	identified by match to protein family HMM PF00082
YP_882105.1	identified by match to protein family HMM PF04600; match to protein family HMM TIGR02958
YP_882107.1	identified by match to protein family HMM PF06359
YP_882108.1	identified by match to protein family HMM PF06013
YP_882109.1	identified by match to protein family HMM PF00934
YP_882110.1	identified by match to protein family HMM PF00823
YP_882111.1	identified by match to protein family HMM PF00823
YP_882112.1	identified by match to protein family HMM PF00823
YP_882114.1	identified by match to protein family HMM PF00823
YP_882117.1	identified by match to protein family HMM PF00067
YP_882118.1	identified by match to protein family HMM PF01580
YP_882119.1	identified by match to protein family HMM PF05108
YP_882120.1	identified by match to protein family HMM PF02446; match to protein family HMM TIGR00217
YP_882121.1	identified by match to protein family HMM PF00296
YP_882123.1	identified by match to protein family HMM PF00174
YP_882130.1	identified by match to protein family HMM PF03861
YP_882131.1	identified by match to protein family HMM PF02515
YP_882132.1	identified by match to protein family HMM PF00106
YP_882133.1	identified by match to protein family HMM PF00676
YP_882134.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_882135.1	identified by match to protein family HMM PF00364
YP_882136.1	identified by match to protein family HMM PF00378
YP_882137.1	identified by match to protein family HMM PF00501
YP_882138.1	identified by match to protein family HMM PF00355
YP_882139.1	initiates steroid ring degradation; catalyzes the transhydrogenation of 3-keto-4-ene-steroid to 3-keto-1,4-diene-steroid e.g., progesterone to 1,4-androstadiene-3,17-dione
YP_882140.1	identified by match to protein family HMM PF00378
YP_882142.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_882143.1	identified by match to protein family HMM PF05724
YP_882144.1	identified by match to protein family HMM PF00440
YP_882146.1	identified by match to protein family HMM PF00440
YP_882147.1	identified by match to protein family HMM PF01083
YP_882148.1	identified by match to protein family HMM PF00106
YP_882149.1	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock
YP_882152.1	identified by match to protein family HMM TIGR00026
YP_882153.1	identified by match to protein family HMM PF00440
YP_882154.1	identified by match to protein family HMM PF00067
YP_882155.1	identified by match to protein family HMM PF00106
YP_882156.1	identified by match to protein family HMM PF00557
YP_882157.1	identified by match to protein family HMM PF00557
YP_882159.1	identified by match to protein family HMM PF00872
YP_882160.1	identified by match to protein family HMM PF00872
YP_882161.1	identified by match to protein family HMM PF00872
YP_882162.1	identified by match to protein family HMM PF00872
YP_882163.1	identified by match to protein family HMM PF02720
YP_882164.1	identified by match to protein family HMM PF05901
YP_882166.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_882167.1	identified by match to protein family HMM PF02515
YP_882168.1	identified by match to protein family HMM PF00378
YP_882169.1	identified by match to protein family HMM PF00106
YP_882170.1	identified by match to protein family HMM PF00067
YP_882171.1	identified by match to protein family HMM PF00440
YP_882173.1	identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894
YP_882174.1	identified by match to protein family HMM PF01209
YP_882175.1	identified by match to protein family HMM PF00884
YP_882176.1	identified by match to protein family HMM PF03060
YP_882177.1	identified by match to protein family HMM PF02409
YP_882178.1	identified by match to protein family HMM PF01047
YP_882179.1	identified by match to protein family HMM PF04909
YP_882180.1	identified by match to protein family HMM PF00596
YP_882181.1	identified by match to protein family HMM PF00501
YP_882183.1	identified by match to protein family HMM PF00174
YP_882185.1	identified by match to protein family HMM PF02720
YP_882186.1	activates fatty acids by binding to coenzyme A
YP_882187.1	identified by match to protein family HMM PF01266; match to protein family HMM PF07992
YP_882189.1	identified by match to protein family HMM PF01796
YP_882191.1	identified by match to protein family HMM PF01575
YP_882193.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_882194.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771
YP_882196.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00498; match to protein family HMM PF01061
YP_882197.1	identified by match to protein family HMM PF07859
YP_882198.1	identified by match to protein family HMM PF00106
YP_882201.1	identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946
YP_882202.1	identified by match to protein family HMM PF00561
YP_882203.1	identified by match to protein family HMM PF00106
YP_882204.1	identified by match to protein family HMM PF01266; match to protein family HMM PF05834; match to protein family HMM PF07992
YP_882205.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_882206.1	identified by match to protein family HMM PF08028
YP_882207.1	identified by match to protein family HMM PF00903
YP_882208.1	identified by match to protein family HMM PF00890; match to protein family HMM PF01266
YP_882210.1	identified by match to protein family HMM PF01614
YP_882211.1	identified by match to protein family HMM PF07859
YP_882213.1	identified by match to protein family HMM PF07876
YP_882214.1	identified by match to protein family HMM PF00106
YP_882217.1	identified by match to protein family HMM PF00106
YP_882218.1	identified by match to protein family HMM PF07859
YP_882220.1	identified by match to protein family HMM PF00106; match to protein family HMM PF07993
YP_882221.1	identified by match to protein family HMM PF00106
YP_882223.1	identified by match to protein family HMM PF00355
YP_882224.1	identified by match to protein family HMM PF00872
YP_882225.1	initiates steroid ring degradation; catalyzes the transhydrogenation of 3-keto-4-ene-steroid to 3-keto-1,4-diene-steroid e.g., progesterone to 1,4-androstadiene-3,17-dione
YP_882229.1	identified by match to protein family HMM PF02720
YP_882230.1	identified by match to protein family HMM PF03551
YP_882231.1	identified by match to protein family HMM PF00296
YP_882233.1	identified by match to protein family HMM PF07992
YP_882234.1	identified by similarity to GB:AAD24211.1; match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732
YP_882235.1	identified by match to protein family HMM PF01613
YP_882236.1	identified by match to protein family HMM PF01872
YP_882238.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_882239.1	identified by match to protein family HMM PF00583; match to protein family HMM TIGR03103
YP_882240.1	identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; match to protein family HMM TIGR03104
YP_882241.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM PF05175; match to protein family HMM PF05401; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733
YP_882242.1	identified by match to protein family HMM PF03621
YP_882247.1	synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_882248.1	Catalyzes the formation of (d)CDP from ATP and (d)CMP
YP_882249.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_882250.1	identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281
YP_882251.1	identified by match to protein family HMM PF02616
YP_882252.1	identified by match to protein family HMM PF01656
YP_882253.1	identified by match to protein family HMM PF01596
YP_882254.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_882255.1	identified by match to protein family HMM PF00293
YP_882256.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_882259.1	identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634
YP_882260.1	catalyzes the phosphorylation of NAD to NADP
YP_882261.1	identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478
YP_882263.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460
YP_882265.1	identified by match to protein family HMM PF05305
YP_882266.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_882267.1	responsible for recognizing base lesions in the genome and initiating base excision DNA repair
YP_882268.1	identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836
YP_882269.1	identified by match to protein family HMM PF00005
YP_882270.1	identified by match to protein family HMM PF01061; match to protein family HMM TIGR00025
YP_882271.1	identified by match to protein family HMM PF00440
YP_882272.1	identified by match to protein family HMM PF03966
YP_882273.1	activates fatty acids by binding to coenzyme A
YP_882277.1	identified by match to protein family HMM PF00732; match to protein family HMM PF05199
YP_882278.1	identified by match to protein family HMM PF00723
YP_882279.1	identified by match to protein family HMM PF00106
YP_882280.1	identified by match to protein family HMM PF01188; match to protein family HMM PF02746
YP_882281.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_882282.1	identified by match to protein family HMM PF00106
YP_882285.1	identified by match to protein family HMM PF00106
YP_882286.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_882287.1	identified by match to protein family HMM PF03861; match to protein family HMM TIGR00229
YP_882288.1	identified by match to protein family HMM PF00005
YP_882289.1	identified by match to protein family HMM PF00067
YP_882290.1	identified by match to protein family HMM PF00195; match to protein family HMM PF02797
YP_882291.1	identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801
YP_882292.1	identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801
YP_882293.1	identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801
YP_882294.1	identified by match to protein family HMM PF00195; match to protein family HMM PF02797
YP_882295.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_882296.1	catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming
YP_882297.1	regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes
YP_882298.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_882299.1	catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine
YP_882300.1	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate
YP_882301.1	bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate
YP_882302.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate
YP_882303.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_882304.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_882306.1	identified by match to protein family HMM PF00211
YP_882308.1	identified by match to protein family HMM PF00588; match to protein family HMM PF08032
YP_882309.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_882310.1	identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001
YP_882311.1	IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits
YP_882312.1	catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_882313.1	identified by match to protein family HMM PF00756
YP_882314.1	identified by match to protein family HMM PF00440
YP_882315.1	identified by match to protein family HMM PF00899
YP_882316.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00254
YP_882319.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
YP_882320.1	identified by match to protein family HMM PF00753
YP_882321.1	identified by match to protein family HMM PF00582
YP_882323.1	identified by match to protein family HMM PF02308
YP_882324.1	identified by match to protein family HMM PF07690
YP_882325.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_882329.1	identified by match to protein family HMM PF00069
YP_882330.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00498; match to protein family HMM PF01061
YP_882331.1	identified by match to protein family HMM PF04167
YP_882332.1	identified by match to protein family HMM PF01068; match to protein family HMM PF04679; match to protein family HMM TIGR02779
YP_882333.1	identified by match to protein family HMM PF01149; match to protein family HMM PF06831
YP_882335.1	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; in Mycobacterium tuberculosis the C-terminal UPF0157 domain appears to be necessary for proper folding of the N-terminal domain
YP_882336.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_882337.1	identified by match to protein family HMM PF03055
YP_882338.1	identified by match to protein family HMM PF00440
YP_882339.1	has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair
YP_882340.1	identified by match to protein family HMM PF01796
YP_882342.1	identified by match to protein family HMM PF00072; match to protein family HMM PF03861
YP_882344.1	identified by match to protein family HMM PF00872
YP_882345.1	identified by match to protein family HMM PF00211
YP_882346.1	identified by match to protein family HMM PF03729
YP_882347.1	identified by match to protein family HMM PF01654
YP_882348.1	identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203
YP_882349.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR02857
YP_882350.1	identified by match to protein family HMM PF00005
YP_882351.1	identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331
YP_882352.1	identified by match to protein family HMM PF02551
YP_882353.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_882355.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_882356.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_882357.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_882358.1	involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water
YP_882359.1	identified by match to protein family HMM TIGR02234
YP_882360.1	with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine
YP_882361.1	identified by match to protein family HMM PF00578
YP_882362.1	identified by match to protein family HMM PF01699
YP_882363.1	PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers
YP_882364.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_882365.1	identified by match to protein family HMM PF00459
YP_882366.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide and the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)anthranilate; involved in histidine and tryptophan biosynthesis
YP_882367.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_882368.1	catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis
YP_882369.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_882370.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_882371.1	identified by match to protein family HMM TIGR00026
YP_882372.1	catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide
YP_882373.1	catalyzes the formation of oxaloacetate from L-aspartate
YP_882374.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_882375.1	identified by match to protein family HMM PF00293
YP_882376.1	identified by match to protein family HMM PF03583
YP_882379.1	catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine
YP_882384.1	identified by match to protein family HMM PF00027; match to protein family HMM PF00924
YP_882386.1	DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium
YP_882387.1	catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine
YP_882388.1	catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate
YP_882390.1	identified by match to protein family HMM PF00877
YP_882391.1	identified by match to protein family HMM PF01757
YP_882392.1	identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100
YP_882393.1	identified by match to protein family HMM PF00128; match to protein family HMM TIGR02401
YP_882394.1	identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402
YP_882396.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_882398.1	identified by match to protein family HMM PF01569
YP_882399.1	catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic
YP_882400.1	identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026
YP_882402.1	PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA
YP_882403.1	identified by match to protein family HMM PF00501
YP_882404.1	identified by match to protein family HMM PF00376
YP_882405.1	identified by match to protein family HMM PF01243
YP_882406.1	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase
YP_882408.1	identified by match to protein family HMM PF00106
YP_882409.1	identified by match to protein family HMM PF00106
YP_882410.1	identified by match to protein family HMM PF01152
YP_882412.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005
YP_882413.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_882414.1	identified by match to protein family HMM PF00710
YP_882415.1	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_882417.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin)
YP_882419.1	identified by match to protein family HMM PF03060
YP_882420.1	identified by match to protein family HMM PF02627
YP_882421.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF07993; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733; match to protein family HMM TIGR01746
YP_882422.1	identified by match to protein family HMM PF00665
YP_882424.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733
YP_882425.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733; match to protein family HMM TIGR01746
YP_882426.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733
YP_882427.1	identified by match to protein family HMM PF03621
YP_882428.1	identified by match to protein family HMM PF00872
YP_882429.1	identified by match to protein family HMM PF05423
YP_882430.1	identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833
YP_882431.1	identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833
YP_882432.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01188
YP_882433.1	identified by match to protein family HMM PF01061
YP_882434.1	identified by match to protein family HMM PF01061; match to protein family HMM TIGR01248
YP_882436.1	identified by match to protein family HMM PF00872
YP_882437.1	identified by match to protein family HMM PF00535
YP_882438.1	identified by match to protein family HMM PF04230
YP_882440.1	identified by match to protein family HMM PF03033
YP_882441.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_882443.1	identified by match to protein family HMM PF05711
YP_882444.1	identified by match to protein family HMM PF03033
YP_882445.1	identified by match to protein family HMM PF01527
YP_882446.1	identified by match to protein family HMM PF00665
YP_882447.1	identified by match to protein family HMM PF03033
YP_882448.1	identified by match to protein family HMM PF05711
YP_882451.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_882453.1	identified by match to protein family HMM PF00665
YP_882454.1	identified by match to protein family HMM PF01527
YP_882456.1	identified by match to protein family HMM PF01757
YP_882457.1	identified by match to protein family HMM PF00144
YP_882458.1	functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins
YP_882459.1	MDM; functions in conversion of succinate to propionate
YP_882460.1	identified by match to protein family HMM PF01642; match to protein family HMM TIGR00642
YP_882464.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_882465.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_882467.1	identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026
YP_882472.1	identified by match to protein family HMM PF01145
YP_882473.1	identified by match to protein family HMM PF01957
YP_882475.1	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic
YP_882476.1	Catalyzes a key regulatory step in fatty acid biosynthesis
YP_882477.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM TIGR01830
YP_882479.1	identified by match to protein family HMM PF00092
YP_882480.1	identified by match to protein family HMM PF01882
YP_882481.1	identified by match to protein family HMM PF07726; match to protein family HMM PF07728
YP_882482.1	identified by match to protein family HMM PF00877
YP_882483.1	identified by match to protein family HMM PF00877
YP_882485.2	Catalyzes the conversion of citrate to isocitrate
YP_882486.1	identified by match to protein family HMM PF00440
YP_882488.1	identified by match to protein family HMM PF00005
YP_882489.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_882490.1	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068
YP_882491.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_882495.1	identified by match to protein family HMM PF01883
YP_882496.1	identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994
YP_882497.1	identified by match to protein family HMM PF00266; match to protein family HMM TIGR01979
YP_882498.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978
YP_882499.1	identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981
YP_882500.1	identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980
YP_882501.1	identified by match to protein family HMM PF01022
YP_882503.1	identified by match to protein family HMM PF00005
YP_882504.1	identified by match to protein family HMM PF01061; match to protein family HMM TIGR00025
YP_882505.1	identified by match to protein family HMM PF02628
YP_882507.1	identified by match to protein family HMM PF00107
YP_882508.1	converts protoheme IX and farnesyl diphosphate to heme O
YP_882509.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_882510.1	catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate
YP_882511.2	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_882512.1	identified by match to protein family HMM TIGR00534
YP_882513.1	identified by match to protein family HMM PF01182; match to protein family HMM TIGR01198
YP_882515.1	identified by match to protein family HMM PF00850
YP_882516.1	identified by match to protein family HMM PF00248
YP_882518.1	catalyzes the formation of oxaloacetate from phosphoenolpyruvate
YP_882519.1	identified by match to protein family HMM PF00296
YP_882520.1	identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810
YP_882521.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_882522.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_882523.1	identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534
YP_882528.1	identified by match to protein family HMM PF01553
YP_882530.1	identified by match to protein family HMM PF00665
YP_882531.1	activates fatty acids by binding to coenzyme A
YP_882532.1	identified by match to protein family HMM PF07859
YP_882534.1	identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946
YP_882535.1	identified by match to protein family HMM PF00823
YP_882536.1	identified by match to protein family HMM PF05305
YP_882537.1	identified by match to protein family HMM PF00823
YP_882538.1	identified by match to protein family HMM PF00823
YP_882539.1	identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647
YP_882540.1	identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826
YP_882541.1	identified by match to protein family HMM PF03668
YP_882542.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_882543.1	identified by match to protein family HMM PF08007
YP_882546.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_882547.1	bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate
YP_882548.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_882549.1	identified by match to protein family HMM PF07161
YP_882550.1	identified by match to protein family HMM PF07690
YP_882551.1	identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326
YP_882552.1	catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate
YP_882553.1	identified by match to protein family HMM PF01029; match to protein family HMM PF01189
YP_882554.1	modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth
YP_882555.1	identified by match to protein family HMM PF01170; match to protein family HMM PF01209; match to protein family HMM PF02353
YP_882556.1	identified by match to protein family HMM PF01047
YP_882557.1	binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity
YP_882558.1	identified by match to protein family HMM PF07947
YP_882559.1	identified by match to protein family HMM PF07859
YP_882560.1	identified by match to protein family HMM PF01266
YP_882561.1	identified by match to protein family HMM PF00296
YP_882562.1	identified by match to protein family HMM PF01037
YP_882563.1	identified by match to protein family HMM PF01243
YP_882564.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_882565.1	catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine
YP_882566.1	Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_882567.1	Essential for recycling GMP and indirectly, cGMP
YP_882569.1	identified by match to protein family HMM PF00376; match to protein family HMM PF03459
YP_882570.1	type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_882571.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_882572.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_882574.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_882575.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_882576.1	regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity
YP_882577.1	identified by match to protein family HMM PF00144
YP_882578.1	identified by match to protein family HMM PF00583
YP_882579.1	identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02985; match to protein family HMM PF03130; match to protein family HMM PF03486; match to protein family HMM PF07992
YP_882580.1	identified by match to protein family HMM PF00005
YP_882581.1	identified by match to protein family HMM PF00528
YP_882583.1	identified by match to protein family HMM PF00037
YP_882584.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_882587.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_882588.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_882590.1	identified by match to protein family HMM PF01276; match to protein family HMM PF03711
YP_882592.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_882593.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_882594.1	identified by match to protein family HMM PF00557
YP_882596.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_882597.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis
YP_882598.1	catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_882599.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_882600.1	identified by match to protein family HMM PF00005
YP_882601.1	identified by match to protein family HMM PF00528
YP_882602.1	identified by match to protein family HMM PF00528
YP_882603.1	identified by match to protein family HMM PF00496
YP_882604.1	identified by match to protein family HMM PF08028
YP_882607.1	identified by match to protein family HMM PF00296
YP_882608.1	identified by match to protein family HMM PF00296
YP_882609.1	identified by match to protein family HMM PF01478
YP_882610.2	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_882611.1	identified by match to protein family HMM PF02618
YP_882612.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_882613.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_882614.1	identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149
YP_882617.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF07728
YP_882619.1	identified by match to protein family HMM PF04168; match to protein family HMM PF04169; match to protein family HMM PF04174
YP_882621.1	identified by match to protein family HMM PF01841
YP_882622.1	identified by match to protein family HMM PF04944
YP_882624.1	identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026
YP_882629.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_882630.1	ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis
YP_882632.1	identified by match to protein family HMM PF04228
YP_882633.1	identified by match to protein family HMM PF00701
YP_882634.1	identified by match to protein family HMM PF00596
YP_882635.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_882637.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR01409
YP_882638.1	identified by match to protein family HMM PF04055
YP_882639.1	identified by match to protein family HMM PF01844; match to protein family HMM PF02720
YP_882642.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_882643.1	identified by match to protein family HMM PF00753
YP_882644.1	identified by match to protein family HMM PF00160
YP_882645.1	identified by match to protein family HMM PF00069; match to protein family HMM PF00160
YP_882646.1	identified by similarity to SP:P52560; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691
YP_882647.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_882648.1	identified by match to protein family HMM PF00496
YP_882649.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_882650.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_882651.1	member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex
YP_882652.1	catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate
YP_882653.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746
YP_882655.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_882656.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_882657.1	endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity
YP_882661.1	identified by match to protein family HMM PF03994
YP_882662.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_882663.1	identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033
YP_882664.1	with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate
YP_882665.1	identified by match to protein family HMM PF02551; match to protein family HMM TIGR00189
YP_882666.1	with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate
YP_882667.1	identified by match to protein family HMM PF00293
YP_882668.1	identified by match to protein family HMM PF00534
YP_882669.1	Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA
YP_882670.1	identified by match to protein family HMM PF01066
YP_882671.1	identified by match to protein family HMM PF01230
YP_882672.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_882673.1	identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831
YP_882674.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_882675.1	identified by match to protein family HMM PF03061
YP_882676.1	identified by match to protein family HMM PF00248
YP_882678.1	identified by match to protein family HMM PF03060
YP_882679.1	identified by match to protein family HMM PF07883
YP_882682.1	identified by match to protein family HMM PF00037
YP_882686.1	identified by match to protein family HMM PF00206; match to protein family HMM TIGR02426
YP_882687.1	identified by match to protein family HMM PF00775; match to protein family HMM TIGR02423
YP_882688.1	identified by match to protein family HMM PF00775; match to protein family HMM TIGR02422
YP_882689.1	identified by match to protein family HMM PF01814
YP_882690.1	identified by match to protein family HMM PF00355
YP_882691.1	identified by match to protein family HMM PF00355; match to protein family HMM PF00848
YP_882692.1	identified by match to protein family HMM PF00866
YP_882694.1	Converts cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol (PP-dihydrodiol) into 3-(2,3-dihydroxylphenyl)propionate
YP_882695.1	identified by match to protein family HMM PF00596
YP_882696.1	identified by match to protein family HMM PF01614
YP_882697.1	identified by match to protein family HMM PF00657
YP_882699.1	identified by match to protein family HMM PF00440
YP_882700.1	identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377
YP_882701.1	identified by match to protein family HMM PF01925
YP_882702.1	identified by match to protein family HMM PF00199
YP_882703.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_882705.1	identified by match to protein family HMM PF00501
YP_882706.1	identified by match to protein family HMM PF00378
YP_882710.1	identified by match to protein family HMM PF01695
YP_882711.1	identified by match to protein family HMM PF00665
YP_882713.1	identified by match to protein family HMM PF00872
YP_882714.1	identified by match to protein family HMM PF00872
YP_882718.1	identified by match to protein family HMM PF04909
YP_882719.1	identified by match to protein family HMM PF04909
YP_882720.1	identified by match to protein family HMM PF06314
YP_882721.1	probable dehydrogenase
YP_882723.1	identified by match to protein family HMM PF04909
YP_882726.1	identified by match to protein family HMM PF05305
YP_882727.1	identified by match to protein family HMM PF00440
YP_882728.1	identified by match to protein family HMM PF00106
YP_882729.1	identified by match to protein family HMM PF00106
YP_882730.1	identified by match to protein family HMM PF02627
YP_882731.1	identified by match to protein family HMM PF00171
YP_882733.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_882735.1	identified by match to protein family HMM PF05305
YP_882736.1	identified by match to protein family HMM PF05305
YP_882737.1	identified by match to protein family HMM PF02861
YP_882739.1	identified by match to protein family HMM PF00583
YP_882740.1	identified by match to protein family HMM PF03969
YP_882741.1	identified by match to protein family HMM PF01872
YP_882742.1	identified by match to protein family HMM PF00561
YP_882744.1	identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357
YP_882746.1	identified by match to protein family HMM PF00872
YP_882748.1	identified by match to protein family HMM PF05724
YP_882749.1	identified by match to protein family HMM PF06778
YP_882750.1	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III
YP_882751.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_882753.1	identified by match to protein family HMM PF00570; match to protein family HMM PF01612
YP_882754.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_882755.1	identified by match to protein family HMM PF00571
YP_882756.1	identified by match to protein family HMM PF02040; match to protein family HMM PF03600
YP_882757.1	cg2084; identified by match to protein family HMM PF01938; match to protein family HMM PF05958
YP_882759.1	identified by match to protein family HMM PF02080; match to protein family HMM PF02254
YP_882760.1	identified by match to protein family HMM PF02080; match to protein family HMM PF02254
YP_882762.1	identified by match to protein family HMM PF01336
YP_882763.1	identified by match to protein family HMM PF00872
YP_882766.1	catalyzes the formation of dUMP from dUTP
YP_882770.1	identified by match to protein family HMM PF00459
YP_882771.1	identified by match to protein family HMM PF00480
YP_882772.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
YP_882773.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_882774.1	identified by match to protein family HMM PF01042
YP_882775.1	identified by match to protein family HMM PF06108
YP_882777.1	identified by match to protein family HMM PF03631
YP_882780.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma factors in this cluster are active during stationary phase
YP_882781.1	identified by match to protein family HMM PF01047; match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023
YP_882783.1	catalyzes the conversion of NADPH to NADH
YP_882785.1	identified by match to protein family HMM PF01908
YP_882786.1	identified by match to protein family HMM PF00561
YP_882787.1	identified by match to protein family HMM PF02567
YP_882789.1	identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244
YP_882790.1	identified by match to protein family HMM PF01476
YP_882791.1	Represses a number of genes involved in the response to DNA damage
YP_882794.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_882795.1	identified by match to protein family HMM PF01926
YP_882796.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_882797.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_882800.1	identified by match to protein family HMM PF00872
YP_882801.1	identified by match to protein family HMM PF03993
YP_882802.1	identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01574
YP_882803.1	binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities
YP_882804.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_882809.1	identified by match to protein family HMM PF07366; match to protein family HMM PF07858
YP_882812.1	identified by match to protein family HMM PF04012
YP_882813.1	identified by match to protein family HMM PF01381
YP_882814.1	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560
YP_882815.1	catalyzes the conversion of l-glutamate to a-N-acetyl-l-glutamate in arginine biosynthesis
YP_882816.1	identified by match to protein family HMM PF01580
YP_882817.1	identified by match to protein family HMM PF03992
YP_882818.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_882819.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_882820.1	identified by match to protein family HMM PF00753; match to protein family HMM PF07521
YP_882821.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_882822.1	flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor
YP_882828.1	identified by match to protein family HMM PF00186
YP_882829.1	ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived
YP_882830.1	identified by match to protein family HMM PF01738
YP_882831.1	identified by match to protein family HMM PF03033
YP_882832.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_882834.1	identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF01039; match to protein family HMM PF02785; match to protein family HMM PF02786
YP_882835.1	identified by match to protein family HMM PF00501
YP_882838.1	identified by match to protein family HMM PF07719
YP_882839.2	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_882841.1	identified by match to protein family HMM PF01844; match to protein family HMM PF02720
YP_882842.1	identified by match to protein family HMM PF01113
YP_882843.1	identified by match to protein family HMM PF00355
YP_882846.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970
YP_882847.1	identified by match to protein family HMM PF00106; match to protein family HMM PF00561
YP_882850.1	identified by match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518
YP_882851.1	identified by match to protein family HMM PF03060
YP_882852.1	identified by match to protein family HMM PF00675; match to protein family HMM PF05193
YP_882853.1	identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; match to protein family HMM TIGR02696
YP_882854.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_882855.1	catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities
YP_882856.1	identified by match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023
YP_882857.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_882859.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_882860.1	identified by match to protein family HMM PF01648
YP_882861.1	identified by match to protein family HMM PF00149
YP_882863.1	identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976
YP_882866.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_882868.1	identified by match to protein family HMM PF01368; match to protein family HMM PF02272
YP_882869.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_882870.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_882871.1	identified by match to protein family HMM PF04296
YP_882872.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_882873.1	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins
YP_882877.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_882879.1	identified by match to protein family HMM PF07690
YP_882880.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; match to protein family HMM TIGR01470
YP_882881.1	responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid
YP_882882.1	catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide
YP_882883.1	identified by match to protein family HMM PF00092; match to protein family HMM PF01078; match to protein family HMM PF07728
YP_882884.1	identified by match to protein family HMM PF00583
YP_882885.2	malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate
YP_882887.1	catalyzes the reduction of mycothione or glutathione to mycothione or glutathione disulfide
YP_882888.1	identified by match to protein family HMM PF03824; match to protein family HMM TIGR00802
YP_882889.1	identified by match to protein family HMM PF01663
YP_882891.1	identified by match to protein family HMM PF00823
YP_882892.1	identified by match to protein family HMM PF00106
YP_882893.1	identified by match to protein family HMM PF00117; match to protein family HMM PF07722
YP_882894.1	identified by match to protein family HMM PF00120
YP_882896.1	catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation
YP_882897.1	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mnin Bacillus subtilis the protein in this cluster is considered non-essential
YP_882898.1	identified by match to protein family HMM PF00905; match to protein family HMM PF05223
YP_882899.1	identified by match to protein family HMM PF00583
YP_882900.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_882901.1	identified by match to protein family HMM PF02163
YP_882902.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_882903.1	identified by match to protein family HMM PF02683
YP_882905.1	identified by match to protein family HMM PF01148
YP_882906.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_882907.1	identified by match to protein family HMM PF00696; match to protein family HMM TIGR02075
YP_882908.1	identified by match to protein family HMM PF05532
YP_882909.1	identified by match to protein family HMM PF00486
YP_882910.1	identified by match to protein family HMM PF01553
YP_882913.1	identified by match to protein family HMM PF06150
YP_882914.1	identified by match to protein family HMM PF01047
YP_882915.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_882916.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_882917.1	identified by match to protein family HMM PF01551
YP_882918.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_882919.1	identified by match to protein family HMM PF01070
YP_882920.1	identified by match to protein family HMM PF04954; match to protein family HMM PF08021
YP_882921.1	identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732
YP_882923.1	identified by match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368
YP_882924.1	identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252
YP_882925.1	involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth
YP_882926.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_882927.1	identified by match to protein family HMM PF03861
YP_882929.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_882930.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_882931.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_882933.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_882934.1	Essential for efficient processing of 16S rRNA
YP_882936.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_882938.1	identified by match to protein family HMM PF00768
YP_882939.1	identified by match to protein family HMM PF00440
YP_882941.1	identified by match to protein family HMM PF01979
YP_882942.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959
YP_882943.1	identified by match to protein family HMM PF00561
YP_882944.1	identified by match to protein family HMM PF04851
YP_882945.1	catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; also involved in adenylylating and deadelnylyating GlnK
YP_882946.1	identified by match to protein family HMM PF00543
YP_882947.1	identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836
YP_882948.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064
YP_882949.1	identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR02168
YP_882951.1	catalyzes the hydrolysis of acylphosphate
YP_882952.1	identified by match to protein family HMM PF02566
YP_882953.1	identified by match to protein family HMM PF02585
YP_882954.1	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases
YP_882955.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_882956.1	identified by match to protein family HMM PF02620
YP_882959.1	identified by match to protein family HMM PF03773
YP_882960.1	catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit
YP_882961.1	identified by match to protein family HMM PF02720
YP_882962.1	identified by match to protein family HMM PF00239; match to protein family HMM PF07508
YP_882963.1	identified by match to protein family HMM PF00004
YP_882967.1	identified by match to protein family HMM PF01580
YP_882969.1	identified by match to protein family HMM PF01381
YP_882970.1	identified by match to protein family HMM PF00293
YP_882974.1	identified by match to protein family HMM PF00440
YP_882975.1	identified by match to protein family HMM PF03061
YP_882976.1	identified by match to protein family HMM PF00440
YP_882977.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_882980.1	identified by match to protein family HMM PF00296
YP_882981.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_882982.1	identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095
YP_882983.1	identified by match to protein family HMM PF07884
YP_882985.1	identified by match to protein family HMM PF07859
YP_882987.1	identified by match to protein family HMM PF00248
YP_882989.1	catalyzes branch migration in Holliday junction intermediates
YP_882990.1	identified by match to protein family HMM PF02734
YP_882992.1	required for 70S ribosome assembly
YP_882993.1	identified by match to protein family HMM PF00106
YP_882994.1	identified by match to protein family HMM PF00106
YP_882996.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_882997.1	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
YP_882998.1	catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP
YP_883000.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_883001.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_883002.1	identified by match to protein family HMM PF00293; match to protein family HMM PF00300
YP_883003.1	identified by match to protein family HMM PF00216
YP_883004.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D
YP_883005.1	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate
YP_883006.1	identified by match to protein family HMM PF01614
YP_883007.1	identified by match to protein family HMM PF01243
YP_883008.1	identified by match to protein family HMM PF01557
YP_883009.1	identified by match to protein family HMM PF07690
YP_883010.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_883011.1	catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate
YP_883013.1	identified by match to protein family HMM PF00258; match to protein family HMM PF03358; match to protein family HMM TIGR01755
YP_883014.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_883015.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit
YP_883017.1	identified by match to protein family HMM PF07681
YP_883019.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_883021.1	catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis
YP_883022.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_883023.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain
YP_883024.1	identified by match to protein family HMM PF01842
YP_883026.1	identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833
YP_883027.1	identified by match to protein family HMM PF05423
YP_883028.1	identified by match to protein family HMM PF01243
YP_883029.1	identified by match to protein family HMM PF00440
YP_883030.1	catalyzes the formation of cysteine and 2-oxobutanoate from cystathionine
YP_883031.1	this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB
YP_883032.1	identified by match to protein family HMM PF01717
YP_883033.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_883034.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01212
YP_883035.1	identified by match to protein family HMM PF01553
YP_883037.1	identified by match to protein family HMM PF00766; match to protein family HMM PF01012
YP_883038.1	identified by match to protein family HMM PF01012
YP_883040.1	identified by match to protein family HMM PF03065
YP_883041.1	identified by match to protein family HMM PF00534
YP_883042.1	identified by match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01777
YP_883045.1	identified by match to protein family HMM PF01740
YP_883046.1	identified by match to protein family HMM PF00348
YP_883047.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734
YP_883048.1	identified by match to protein family HMM PF00494
YP_883051.1	identified by match to protein family HMM PF01209
YP_883052.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01593
YP_883053.1	identified by match to protein family HMM PF00355
YP_883055.1	identified by match to protein family HMM PF01047
YP_883056.1	catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate
YP_883057.1	identified by match to protein family HMM PF03176
YP_883059.1	identified by match to protein family HMM PF00875; match to protein family HMM PF03441
YP_883060.1	identified by match to protein family HMM PF00132
YP_883065.1	identified by match to protein family HMM PF01209
YP_883066.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_883067.1	identified by match to protein family HMM PF00293
YP_883068.1	identified by match to protein family HMM PF00005
YP_883069.1	identified by match to protein family HMM PF00702; match to protein family HMM PF01842; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488
YP_883070.1	identified by match to protein family HMM PF00115; match to protein family HMM TIGR02891
YP_883072.1	identified by match to protein family HMM PF01497
YP_883073.1	identified by match to protein family HMM PF00107
YP_883075.1	B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE
YP_883077.1	identified by match to protein family HMM PF00440
YP_883079.1	identified by match to protein family HMM PF00440
YP_883081.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_883082.1	in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF
YP_883083.1	identified by match to protein family HMM PF00462; match to protein family HMM PF05768; match to protein family HMM TIGR02194
YP_883084.1	identified by match to protein family HMM PF03358
YP_883085.1	identified by match to protein family HMM PF00440
YP_883086.1	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_883087.1	identified by match to protein family HMM PF00106
YP_883088.1	identified by match to protein family HMM PF00440
YP_883089.1	identified by match to protein family HMM PF00067
YP_883094.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_883095.1	identified by match to protein family HMM PF01796
YP_883096.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771
YP_883097.1	identified by match to protein family HMM PF00106
YP_883098.1	catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA
YP_883099.1	identified by match to protein family HMM PF02554
YP_883100.1	identified by match to protein family HMM PF00012
YP_883102.1	identified by match to protein family HMM PF00378
YP_883103.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_883106.1	identified by match to protein family HMM PF01636
YP_883107.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_883109.1	identified by similarity to SP:Q57225; match to protein family HMM PF00893
YP_883113.1	identified by match to protein family HMM PF05423
YP_883114.1	identified by match to protein family HMM PF00005
YP_883115.1	identified by match to protein family HMM PF00005; match to protein family HMM PF02361
YP_883116.1	identified by match to protein family HMM PF00113; match to protein family HMM PF03952
YP_883117.1	identified by match to protein family HMM PF02627
YP_883118.1	identified by match to protein family HMM PF02668
YP_883120.1	identified by match to protein family HMM PF00355
YP_883121.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_883122.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175
YP_883123.1	identified by match to protein family HMM PF01047
YP_883125.1	identified by match to protein family HMM PF00355
YP_883126.1	identified by match to protein family HMM PF00171
YP_883129.1	identified by match to protein family HMM PF05012; match to protein family HMM TIGR01550
YP_883131.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_883132.1	may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling
YP_883133.1	may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling
YP_883135.1	identified by match to protein family HMM PF04343
YP_883137.1	identified by match to protein family HMM PF03328
YP_883138.1	identified by match to protein family HMM PF01814
YP_883139.1	identified by match to protein family HMM PF02696
YP_883142.1	identified by match to protein family HMM PF00440
YP_883144.1	identified by match to protein family HMM PF05305
YP_883145.1	identified by match to protein family HMM PF00614
YP_883146.1	identified by match to protein family HMM PF05721
YP_883147.1	identified by match to protein family HMM PF00144
YP_883151.1	identified by match to protein family HMM PF00872
YP_883153.1	identified by match to protein family HMM PF00892
YP_883155.1	identified by match to protein family HMM PF02687
YP_883156.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR00960; match to protein family HMM TIGR02673
YP_883158.1	identified by match to protein family HMM PF00924
YP_883159.1	recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1
YP_883166.1	identified by match to protein family HMM PF01145
YP_883167.1	identified by match to protein family HMM PF00823
YP_883168.1	identified by match to protein family HMM PF00823
YP_883170.1	identified by match to protein family HMM PF00459; match to protein family HMM TIGR02067
YP_883171.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_883172.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_883174.1	identified by match to protein family HMM PF00107
YP_883175.1	identified by match to protein family HMM PF04209
YP_883177.1	identified by match to protein family HMM PF02515
YP_883178.1	identified by match to protein family HMM PF00682
YP_883179.1	identified by match to protein family HMM PF00440
YP_883180.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_883181.1	identified by match to protein family HMM PF01636
YP_883183.1	identified by match to protein family HMM PF04264
YP_883185.1	Catalyzes the transfer of electrons from NADH to quinone
YP_883186.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_883187.1	Catalyzes the transfer of electrons from NADH to quinone
YP_883188.1	Catalyzes the transfer of electrons from NADH to quinone
YP_883189.1	Catalyzes the transfer of electrons from NADH to quinone
YP_883190.1	identified by match to protein family HMM PF01512; match to protein family HMM TIGR01959
YP_883191.1	Catalyzes the transfer of electrons from NADH to quinone
YP_883192.1	Catalyzes the transfer of electrons from NADH to quinone
YP_883193.1	Catalyzes the transfer of electrons from NADH to quinone
YP_883194.1	Catalyzes the transfer of electrons from NADH to quinone
YP_883195.1	Catalyzes the transfer of electrons from NADH to quinone
YP_883196.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_883197.1	Catalyzes the transfer of electrons from NADH to quinone
YP_883198.1	Catalyzes the transfer of electrons from NADH to quinone
YP_883199.1	identified by match to protein family HMM PF00440
YP_883200.1	identified by match to protein family HMM PF02409
YP_883202.1	identified by match to protein family HMM PF01882
YP_883204.1	identified by match to protein family HMM PF07726; match to protein family HMM PF07728
YP_883207.1	identified by match to protein family HMM PF02720
YP_883208.1	identified by match to protein family HMM PF00106
YP_883209.1	identified by match to protein family HMM PF00440
YP_883210.1	identified by match to protein family HMM PF01636
YP_883212.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_883213.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01593
YP_883214.1	identified by match to protein family HMM PF00561
YP_883215.1	identified by match to protein family HMM PF00165
YP_883216.1	identified by match to protein family HMM PF00534
YP_883217.1	identified by match to protein family HMM PF01339
YP_883218.1	identified by match to protein family HMM PF00989; match to protein family HMM PF01739; match to protein family HMM PF03705; match to protein family HMM TIGR00229
YP_883219.1	identified by match to protein family HMM PF01740
YP_883220.1	identified by similarity to SP:P21179; match to protein family HMM PF00199; match to protein family HMM PF01965; match to protein family HMM PF06628
YP_883225.1	identified by match to protein family HMM PF02585
YP_883226.1	identified by match to protein family HMM PF03372
YP_883232.1	identified by match to protein family HMM PF00534
YP_883233.1	identified by match to protein family HMM PF00535
YP_883234.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_883235.1	identified by match to protein family HMM PF02543
YP_883236.1	identified by match to protein family HMM PF00535; match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662
YP_883237.1	identified by match to protein family HMM PF01075
YP_883238.1	identified by match to protein family HMM TIGR00441
YP_883239.1	identified by match to protein family HMM PF00106
YP_883240.1	identified by match to protein family HMM PF01075
YP_883241.1	identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026
YP_883242.1	catalyzes the formation of acetate from pyruvate
YP_883243.1	identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758
YP_883244.1	identified by match to protein family HMM PF01814
YP_883247.1	identified by match to protein family HMM PF00248
YP_883248.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370
YP_883249.1	identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100
YP_883250.1	identified by match to protein family HMM PF00107
YP_883251.1	identified by match to protein family HMM PF03861
YP_883252.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_883253.1	identified by match to protein family HMM PF07098
YP_883254.1	identified by match to protein family HMM PF00376
YP_883255.1	identified by match to protein family HMM PF00011
YP_883256.1	identified by match to protein family HMM PF03861
YP_883257.1	identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730
YP_883258.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_883259.1	identified by match to protein family HMM PF01243
YP_883261.1	identified by match to protein family HMM PF02518
YP_883262.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_883264.1	identified by match to protein family HMM PF05360
YP_883267.1	identified by match to protein family HMM PF00999
YP_883268.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970
YP_883269.1	identified by match to protein family HMM PF00561
YP_883271.1	identified by match to protein family HMM PF00501; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746
YP_883273.1	identified by match to protein family HMM PF00106
YP_883274.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_883275.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_883276.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_883278.1	identified by similarity to SP:P06610; match to protein family HMM PF00255
YP_883280.1	identified by match to protein family HMM PF00872
YP_883281.1	identified by match to protein family HMM PF00872
YP_883285.1	identified by match to protein family HMM PF03699
YP_883289.1	identified by match to protein family HMM PF03109
YP_883290.1	identified by match to protein family HMM PF02467
YP_883291.1	identified by match to protein family HMM PF00570; match to protein family HMM PF00580
YP_883292.1	identified by match to protein family HMM PF00462; match to protein family HMM TIGR02200
YP_883293.1	can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates
YP_883294.1	identified by match to protein family HMM PF02254; match to protein family HMM PF07885
YP_883295.1	identified by match to protein family HMM PF00580
YP_883296.1	identified by match to protein family HMM PF00580
YP_883298.1	identified by match to protein family HMM PF00561
YP_883299.1	identified by match to protein family HMM PF01035
YP_883300.1	identified by match to protein family HMM TIGR02569
YP_883301.1	The proteins in this cluster have high sequence similarity to MoeB and are possibly involved in the synthesis of molybdopterin, but there has been no biochemical or physiological characterization. There is also no genetic linkage to other molybdopterin cofactor synthesis proteins. These proteins are similar to a Pseudomonas stutzeri protein which is essential to pyridine-2,6-bis(thiocarboxylic acid) synthesis that possibly activates a substrate by adenylation
YP_883303.1	identified by match to protein family HMM PF00440
YP_883308.1	identified by match to protein family HMM PF01656
YP_883309.1	forms a homodimer in Mycobacterium tuberculosis; belongs to the dPGM superfamily
YP_883310.1	identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543
YP_883311.1	identified by match to protein family HMM PF00583
YP_883313.1	identified by match to protein family HMM PF00781
YP_883314.1	identified by match to protein family HMM PF02467
YP_883315.1	identified by match to protein family HMM PF02518; match to protein family HMM PF07568
YP_883316.1	identified by match to protein family HMM PF00364
YP_883317.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response
YP_883318.1	identified by match to protein family HMM PF00106
YP_883319.1	identified by match to protein family HMM PF00107
YP_883321.1	identified by match to protein family HMM PF00106
YP_883322.1	identified by match to protein family HMM PF00753
YP_883323.1	identified by match to protein family HMM PF00106
YP_883326.1	identified by match to protein family HMM PF02720
YP_883327.1	identified by match to protein family HMM PF02586
YP_883328.2	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_883329.1	identified by match to protein family HMM PF03193
YP_883330.1	identified by match to protein family HMM PF01638
YP_883331.1	identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930
YP_883334.1	identified by match to protein family HMM PF00440; match to protein family HMM PF02796
YP_883335.1	identified by match to protein family HMM PF00440
YP_883337.1	identified by match to protein family HMM PF00487
YP_883338.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970
YP_883340.1	identified by match to protein family HMM PF03976
YP_883341.1	identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946
YP_883343.1	identified by match to protein family HMM PF00999
YP_883344.1	identified by match to protein family HMM PF02080
YP_883346.1	identified by match to protein family HMM PF00196; match to protein family HMM PF01966
YP_883347.1	identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741
YP_883350.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_883351.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_883352.1	catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP)
YP_883353.1	catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine
YP_883354.1	identified by match to protein family HMM PF00440
YP_883355.1	identified by match to protein family HMM PF00301
YP_883356.1	identified by match to protein family HMM PF00301
YP_883357.1	identified by match to protein family HMM PF00487
YP_883358.1	identified by match to protein family HMM PF00324
YP_883360.1	identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218
YP_883364.1	identified by match to protein family HMM PF02467
YP_883365.1	catalyzes the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP from actyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO)
YP_883366.1	catalyzes the addition of gamma linked glutamate to 7,8-didemethyl-8-hydroxy-5-deazariboflavin coenzyme F420-0)
YP_883368.1	identified by match to protein family HMM PF00293
YP_883370.1	identified by match to protein family HMM PF00132; match to protein family HMM PF00483
YP_883371.1	identified by match to protein family HMM PF00535
YP_883372.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214
YP_883373.1	identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_883374.1	identified by match to protein family HMM TIGR03089
YP_883376.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525
YP_883377.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_883378.1	identified by match to protein family HMM PF02515
YP_883379.1	identified by match to protein family HMM PF00069; match to protein family HMM PF01436
YP_883380.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975
YP_883381.1	identified by match to protein family HMM PF00072
YP_883382.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF05227
YP_883383.1	identified by match to protein family HMM PF00072; match to protein family HMM PF07228
YP_883384.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_883385.1	identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162
YP_883386.1	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway
YP_883387.1	identified by match to protein family HMM PF04138
YP_883388.1	identified by match to protein family HMM PF03703
YP_883389.1	identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121
YP_883390.1	catalyzes transhydrogenation of 3-keto-4-ene-steroid to 3-keto-1,4-diene-steroid e.g., progesterone to 1,4-androstadiene-3,17-dione
YP_883391.1	identified by match to protein family HMM PF01039
YP_883393.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_883394.1	identified by match to protein family HMM PF00581
YP_883395.1	identified by match to protein family HMM PF02657
YP_883396.1	identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786
YP_883397.1	identified by match to protein family HMM PF01740
YP_883398.1	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock
YP_883403.1	catalyzes the formation of 2-aminoadipate 6-semiladehyde and glutamate from lysine and 2-oxoglutarate
YP_883404.1	identified by match to protein family HMM PF01037
YP_883405.1	identified by match to protein family HMM PF07063
YP_883406.1	identified by match to protein family HMM PF00171
YP_883407.1	identified by match to protein family HMM PF00440
YP_883408.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_883411.1	identified by match to protein family HMM PF05305
YP_883413.1	identified by match to protein family HMM PF00823
YP_883414.1	identified by match to protein family HMM PF00823
YP_883417.1	identified by match to protein family HMM PF00849
YP_883418.1	identified by match to protein family HMM PF01266
YP_883420.1	identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891
YP_883421.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_883422.1	identified by match to protein family HMM PF01083
YP_883423.1	catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation
YP_883424.1	identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880
YP_883425.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_883426.1	identified by match to protein family HMM PF04185
YP_883428.1	identified by match to protein family HMM PF00092
YP_883429.1	identified by match to protein family HMM PF00872
YP_883430.1	identified by match to protein family HMM PF01844; match to protein family HMM PF02720
YP_883432.1	catalyzes the formation of inosine from adenosine
YP_883433.1	Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate
YP_883434.1	Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis
YP_883435.1	identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970
YP_883437.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol
YP_883438.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase
YP_883440.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_883441.1	identified by match to protein family HMM PF00202
YP_883443.1	identified by match to protein family HMM PF00768
YP_883444.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879
YP_883445.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR00221
YP_883446.1	identified by match to protein family HMM PF00893
YP_883447.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_883448.1	identified by match to protein family HMM PF00561
YP_883449.1	Converts isocitrate to alpha ketoglutarate
YP_883450.1	identified by match to protein family HMM PF03971; match to protein family HMM TIGR00178
YP_883452.1	catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol
YP_883453.1	Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine
YP_883455.1	identified by match to protein family HMM PF00872
YP_883457.1	identified by match to protein family HMM PF05305
YP_883459.1	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate
YP_883460.1	identified by match to protein family HMM PF00724
YP_883461.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00498; match to protein family HMM PF01061
YP_883462.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00498; match to protein family HMM PF01061
YP_883463.1	identified by match to protein family HMM PF00805
YP_883464.1	identified by match to protein family HMM PF03029
YP_883465.1	identified by match to protein family HMM PF05331
YP_883466.1	identified by match to protein family HMM PF03259
YP_883467.1	identified by match to protein family HMM PF00672; match to protein family HMM PF02518
YP_883469.1	identified by match to protein family HMM PF00588
YP_883470.1	identified by match to protein family HMM PF00881
YP_883471.1	DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.
YP_883472.1	identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946
YP_883473.1	identified by match to protein family HMM PF02358; match to protein family HMM TIGR00685; match to protein family HMM TIGR01484
YP_883474.1	identified by match to protein family HMM PF01575
YP_883475.1	identified by match to protein family HMM PF00300
YP_883476.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_883477.1	identified by match to protein family HMM PF01156
YP_883478.1	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short chain unsaturated acyl-ACP
YP_883479.1	identified by match to protein family HMM PF01070
YP_883483.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_883484.1	identified by match to protein family HMM PF00823
YP_883485.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR02009
YP_883486.1	identified by match to protein family HMM PF03632; match to protein family HMM PF03633; match to protein family HMM PF03636
YP_883487.1	identified by match to protein family HMM PF00440
YP_883488.1	identified by match to protein family HMM PF02668
YP_883489.1	identified by match to protein family HMM PF00732; match to protein family HMM PF01266
YP_883490.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_883491.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_883494.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this protein is involved in expression of ribosome-associated gene products in stationary phase
YP_883496.1	identified by match to protein family HMM PF02467
YP_883497.1	identified by similarity to SP:P53635; match to protein family HMM PF00080
YP_883499.1	identified by match to protein family HMM PF01494
YP_883500.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth
YP_883501.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_883502.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_883503.1	identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575
YP_883504.1	identified by match to protein family HMM PF00814
YP_883505.1	identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150
YP_883506.1	identified by match to protein family HMM PF00561
YP_883507.1	converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer
YP_883508.1	identified by match to protein family HMM PF00282; match to protein family HMM TIGR01788
YP_883509.1	identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197
YP_883512.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
YP_883516.1	identified by match to protein family HMM PF00296
YP_883519.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_883520.1	forms a direct contact with the tRNA during translation
YP_883521.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_883522.1	identified by match to protein family HMM PF06013
YP_883525.1	identified by match to protein family HMM PF01580
YP_883527.1	identified by match to protein family HMM PF00082
YP_883528.1	identified by match to protein family HMM PF05108
YP_883529.1	identified by match to protein family HMM PF01083
YP_883530.1	identified by match to protein family HMM PF01083
YP_883531.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_883532.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_883533.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_883534.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_883535.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_883536.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_883537.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_883538.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_883541.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181
YP_883542.1	identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221
YP_883543.1	identified by match to protein family HMM PF01757
YP_883544.1	identified by match to protein family HMM PF01757
YP_883545.1	identified by match to protein family HMM PF01757
YP_883547.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR01409
YP_883548.1	identified by match to protein family HMM PF00127
YP_883549.1	identified by match to protein family HMM PF00355
YP_883550.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937
YP_883552.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722
YP_883553.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_883554.1	identified by match to protein family HMM PF03446; match to protein family HMM TIGR01692
YP_883555.1	identified by match to protein family HMM PF01047
YP_883556.1	identified by match to protein family HMM PF00155
YP_883559.1	identified by match to protein family HMM PF02775; match to protein family HMM PF02776
YP_883560.1	identified by match to protein family HMM PF00005
YP_883561.1	identified by match to protein family HMM PF02687
YP_883562.1	identified by match to protein family HMM PF01209
YP_883564.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01494
YP_883566.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in M. tuberculosis this protein regulates polyketide synthases and secreted or membrane proteins
YP_883567.1	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn
YP_883568.2	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_883569.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_883570.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_883572.1	identified by match to protein family HMM PF00370; match to protein family HMM PF02782
YP_883573.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_883574.1	catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate
YP_883575.1	identified by match to protein family HMM PF00107
YP_883576.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_883577.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_883578.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_883579.1	identified by match to protein family HMM PF01343; match to protein family HMM TIGR00705; match to protein family HMM TIGR00706
YP_883580.1	identified by match to protein family HMM PF00296
YP_883581.1	late assembly protein
YP_883582.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_883583.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_883584.1	binds 5S rRNA along with protein L5 and L25
YP_883585.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_883586.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_883587.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif
YP_883588.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_883589.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_883590.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_883591.1	identified by match to protein family HMM PF01844; match to protein family HMM PF02720
YP_883593.1	identified by match to protein family HMM PF03781
YP_883595.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975
YP_883596.1	identified by match to protein family HMM PF00884
YP_883597.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_883598.1	one of the stabilizing components for the large ribosomal subunit
YP_883599.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_883600.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_883601.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_883602.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_883603.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_883604.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_883605.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_883606.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_883607.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_883609.1	identified by match to protein family HMM PF00732; match to protein family HMM PF01266; match to protein family HMM PF05199
YP_883610.1	identified by match to protein family HMM PF00535
YP_883611.1	identified by match to protein family HMM PF02633
YP_883612.1	identified by match to protein family HMM PF01070
YP_883613.1	identified by match to protein family HMM PF04055
YP_883616.1	identified by match to protein family HMM PF00440
YP_883618.1	identified by match to protein family HMM PF00248
YP_883619.1	identified by match to protein family HMM PF00459
YP_883620.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_883621.2	identified by match to protein family HMM PF00106
YP_883623.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_883624.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_883625.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_883626.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_883628.1	identified by match to protein family HMM PF00440
YP_883631.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_883632.1	identified by match to protein family HMM PF07848; match to protein family HMM PF08223
YP_883633.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_883634.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_883635.1	Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues
YP_883636.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_883637.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_883638.1	identified by match to protein family HMM PF00005
YP_883639.1	identified by match to protein family HMM PF03055
YP_883640.1	identified by match to protein family HMM PF00440
YP_883641.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_883642.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_883644.1	identified by match to protein family HMM PF00480
YP_883646.1	identified by match to protein family HMM PF01074; match to protein family HMM PF07748
YP_883647.1	identified by match to protein family HMM PF04978
YP_883648.1	identified by match to protein family HMM PF03109
YP_883649.1	identified by match to protein family HMM PF00561
YP_883650.1	identified by match to protein family HMM PF02353
YP_883651.1	identified by match to protein family HMM PF02353
YP_883652.1	identified by match to protein family HMM PF04946
YP_883653.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937
YP_883654.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_883655.1	binds directly to 23S ribosomal RNA
YP_883656.1	Modulates Rho-dependent transcription termination
YP_883657.1	forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_883658.1	functions as a heterodimer along with HadB in fatty acid biosynthesis; fatty acid synthase type II; FAS-II
YP_883659.1	functions as a heterodimer along with HadA or HadC in fatty acid biosynthesis; fatty acid synthase type II; FAS-II
YP_883660.1	functions as a heterodimer along with HadB in fatty acid biosynthesis; fatty acid synthase type II; FAS-II
YP_883661.1	identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023
YP_883663.1	identified by match to protein family HMM PF00753
YP_883665.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_883666.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568
YP_883668.1	identified by match to protein family HMM PF01734
YP_883669.1	catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide
YP_883670.1	identified by match to protein family HMM PF01170; match to protein family HMM PF05175
YP_883671.1	identified by match to protein family HMM PF00881
YP_883672.1	identified by match to protein family HMM PF02353
YP_883673.1	identified by match to protein family HMM PF04257; match to protein family HMM TIGR01450
YP_883674.1	identified by match to protein family HMM PF00580; match to protein family HMM TIGR00609
YP_883675.1	identified by match to protein family HMM TIGR01447
YP_883677.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_883678.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_883679.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_883680.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_883681.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_883682.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_883683.1	identified by match to protein family HMM PF02405
YP_883684.1	identified by match to protein family HMM PF02405
YP_883685.1	identified by match to protein family HMM PF03693; match to protein family HMM TIGR02606
YP_883687.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_883688.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_883689.1	identified by match to protein family HMM PF03706; match to protein family HMM TIGR00374
YP_883690.1	identified by match to protein family HMM PF07971; match to protein family HMM TIGR01180
YP_883692.1	identified by match to protein family HMM PF03861
YP_883693.1	identified by match to protein family HMM PF01927
YP_883694.1	catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism
YP_883695.1	identified by match to protein family HMM PF01087; match to protein family HMM PF02744; match to protein family HMM TIGR00209
YP_883697.1	identified by match to protein family HMM PF00561
YP_883698.1	identified by match to protein family HMM PF01936
YP_883699.1	identified by match to protein family HMM PF00067
YP_883701.1	identified by match to protein family HMM PF01566
YP_883702.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_883704.1	nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription
YP_883706.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_883707.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916
YP_883708.1	identified by match to protein family HMM PF01381
YP_883709.1	metalloprotease
YP_883710.1	identified by match to protein family HMM PF00348
YP_883711.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF04820; match to protein family HMM PF05834; match to protein family HMM PF07992; match to protein family HMM TIGR02032
YP_883712.1	identified by match to protein family HMM PF05305
YP_883713.1	Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone
YP_883715.1	identified by match to protein family HMM PF00534
YP_883717.1	SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis
YP_883718.1	identified by match to protein family HMM PF00561
YP_883719.1	catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate
YP_883720.1	identified by match to protein family HMM PF07969
YP_883721.1	activates fatty acids by binding to coenzyme A
YP_883722.1	identified by match to protein family HMM PF00440
YP_883723.1	identified by match to protein family HMM PF00248
YP_883724.1	identified by match to protein family HMM TIGR00026; mycobacterium tuberculosis paralogous family protein 11
YP_883725.1	catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA
YP_883726.1	identified by match to protein family HMM PF00106
YP_883727.1	identified by match to protein family HMM PF00903
YP_883728.1	identified by match to protein family HMM PF01384
YP_883731.1	identified by match to protein family HMM PF00501
YP_883734.1	identified by match to protein family HMM PF00535
YP_883738.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370
YP_883739.1	Catalyzes the reversible phosphorolysis of 5'-deoxy-5'- methylthioadenosine (MTA) to adenine and 5-methylthio-D-ribose-1- phosphate
YP_883740.1	catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate
YP_883741.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_883745.1	identified by match to protein family HMM PF01578; match to protein family HMM TIGR03144
YP_883746.1	identified by match to protein family HMM PF05140
YP_883747.1	identified by match to protein family HMM PF02683
YP_883749.1	identified by match to protein family HMM PF00300
YP_883750.1	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway
YP_883752.1	identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026
YP_883753.1	identified by match to protein family HMM PF01188
YP_883754.1	identified by match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF03721; match to protein family HMM PF03807; match to protein family HMM TIGR00745
YP_883755.1	identified by match to protein family HMM PF00324
YP_883756.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_883757.1	identified by similarity to SP:P40402
YP_883758.1	identified by match to protein family HMM PF00756
YP_883759.1	identified by match to protein family HMM PF01757
YP_883761.1	identified by match to protein family HMM PF00657
YP_883762.1	identified by match to protein family HMM PF01757
YP_883763.1	identified by match to protein family HMM PF01740
YP_883766.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_883767.1	identified by match to protein family HMM PF00590; match to protein family HMM PF02602
YP_883768.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_883769.1	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_883770.1	identified by match to protein family HMM PF05768
YP_883771.1	identified by match to protein family HMM PF06013
YP_883774.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490
YP_883776.1	identified by match to protein family HMM PF02353
YP_883777.1	identified by match to protein family HMM PF01553
YP_883778.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370
YP_883779.1	identified by match to protein family HMM PF08213
YP_883780.1	identified by match to protein family HMM TIGR01764
YP_883781.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_883783.1	identified by match to protein family HMM PF01261
YP_883785.1	identified by match to protein family HMM PF02541
YP_883788.1	identified by match to protein family HMM PF00293
YP_883789.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_883790.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_883791.1	2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate
YP_883793.1	identified by match to protein family HMM PF00534
YP_883794.1	identified by match to protein family HMM PF00480
YP_883795.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_883796.1	identified by match to protein family HMM PF03734
YP_883797.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_883798.1	identified by match to protein family HMM PF00795
YP_883800.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate
YP_883804.1	identified by match to protein family HMM PF01381
YP_883805.1	identified by match to protein family HMM PF04286
YP_883806.1	identified by match to protein family HMM PF00440
YP_883807.1	identified by match to protein family HMM PF02353
YP_883808.1	identified by match to protein family HMM PF02353
YP_883809.1	converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA
YP_883810.1	identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346
YP_883811.1	identified by match to protein family HMM PF01643
YP_883812.1	identified by match to protein family HMM PF01381; match to protein family HMM PF06114
YP_883813.1	identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778
YP_883815.1	E3 component of alpha keto acid dehydrogenase complexes LpdC; forms a homodimer; binds one molecule of FAD monomer; catalyzes NAD+-dependent oxidation of dihydrolipoyl cofactors that are covalently linked to the E2 component
YP_883818.1	identified by match to protein family HMM PF05610
YP_883819.1	identified by match to protein family HMM PF00171
YP_883821.1	catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_883823.1	identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833
YP_883824.1	identified by match to protein family HMM PF05423
YP_883825.1	identified by match to protein family HMM PF00440
YP_883826.1	identified by match to protein family HMM PF02683
YP_883829.1	identified by match to protein family HMM PF00903
YP_883830.1	identified by match to protein family HMM PF07908; match to protein family HMM PF07969
YP_883831.1	identified by match to protein family HMM PF00823
YP_883834.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_883835.1	identified by match to protein family HMM PF00557
YP_883836.1	identified by match to protein family HMM PF07883
YP_883837.1	identified by match to protein family HMM PF00106
YP_883838.1	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177
YP_883839.1	identified by match to protein family HMM PF07690
YP_883840.1	catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine
YP_883841.1	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473
YP_883842.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02359; match to protein family HMM PF07728
YP_883843.1	identified by match to protein family HMM PF00440
YP_883845.1	identified by match to protein family HMM PF00378
YP_883847.1	identified by match to protein family HMM PF02190
YP_883848.1	ATP-dependent carboxylate-amine ligase
YP_883849.1	identified by similarity to SP:P53635; match to protein family HMM PF00080
YP_883852.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_883854.1	identified by match to protein family HMM PF03372; match to protein family HMM TIGR00633
YP_883858.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_883859.1	catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine
YP_883861.1	identified by match to protein family HMM PF01047
YP_883862.1	identified by match to protein family HMM PF00296
YP_883864.1	identified by match to protein family HMM PF02225; match to protein family HMM PF04389
YP_883865.1	identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389
YP_883870.1	identified by match to protein family HMM PF00657
YP_883871.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_883872.1	with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate
YP_883873.1	identified by match to protein family HMM PF01266; match to protein family HMM TIGR02352
YP_883874.1	Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate
YP_883875.1	identified by match to protein family HMM PF00293
YP_883877.1	identified by match to protein family HMM PF00497
YP_883878.1	identified by match to protein family HMM PF00069
YP_883881.1	identified by match to protein family HMM PF00440
YP_883882.1	identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833
YP_883883.1	identified by match to protein family HMM PF05423
YP_883885.1	identified by match to protein family HMM PF07394; match to protein family HMM TIGR01409
YP_883886.1	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA
YP_883887.1	catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate
YP_883888.1	identified by match to protein family HMM PF00296
YP_883889.1	identified by match to protein family HMM PF00753
YP_883890.1	identified by match to protein family HMM PF00583
YP_883891.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_883893.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_883894.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_883895.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_883896.1	identified by match to protein family HMM PF00440
YP_883899.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_883900.1	identified by match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM TIGR01325
YP_883902.1	non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis
YP_883903.1	identified by match to protein family HMM PF03061
YP_883904.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_883905.1	identified by match to protein family HMM PF00300
YP_883908.1	identified by match to protein family HMM PF02163
YP_883909.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_883913.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428; match to protein family HMM TIGR02429
YP_883915.1	identified by match to protein family HMM PF00588
YP_883917.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_883918.1	identified by match to protein family HMM PF00106
YP_883920.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_883922.1	identified by match to protein family HMM PF00042; match to protein family HMM PF00175; match to protein family HMM PF00970
YP_883923.1	identified by match to protein family HMM PF01266
YP_883928.1	identified by match to protein family HMM PF00348
YP_883930.1	identified by match to protein family HMM PF00211; match to protein family HMM PF01590; match to protein family HMM PF07719
YP_883931.1	identified by match to protein family HMM PF00376
YP_883932.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_883933.1	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor
YP_883934.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_883939.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879
YP_883942.1	identified by match to protein family HMM PF00037; match to protein family HMM PF02754
YP_883943.1	broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor
YP_883944.1	identified by match to protein family HMM PF07907
YP_883945.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207
YP_883947.1	identified by match to protein family HMM PF07398; match to protein family HMM TIGR03083
YP_883948.1	identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026
YP_883953.1	Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis
YP_883958.1	identified by match to protein family HMM PF03734
YP_883960.1	identified by match to protein family HMM PF05305
YP_883962.1	identified by match to protein family HMM PF01232; match to protein family HMM PF08125
YP_883968.1	identified by match to protein family HMM PF00722
YP_883969.1	identified by match to protein family HMM PF00107
YP_883974.1	identified by match to protein family HMM PF00440
YP_883977.1	identified by match to protein family HMM PF01569
YP_883980.1	identified by match to protein family HMM PF00881; match to protein family HMM TIGR02476
YP_883981.1	identified by match to protein family HMM PF00884
YP_883982.1	catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate
YP_883985.1	identified by match to protein family HMM PF00082
YP_883986.1	identified by match to protein family HMM PF04600
YP_883990.1	identified by match to protein family HMM PF00823
YP_883991.1	identified by match to protein family HMM PF00934
YP_883992.1	identified by match to protein family HMM PF05108
YP_883993.1	identified by match to protein family HMM PF00004
YP_883994.1	identified by match to protein family HMM PF00823
YP_883995.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_883996.1	identified by match to protein family HMM PF07683
YP_883997.1	identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009
YP_883998.2	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_884000.1	identified by match to protein family HMM PF03773
YP_884001.1	identified by match to protein family HMM PF00823
YP_884005.1	identified by match to protein family HMM PF00668
YP_884007.1	identified by match to protein family HMM PF00903
YP_884008.1	identified by match to protein family HMM PF00440
YP_884009.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_884012.1	activates fatty acids by binding to coenzyme A
YP_884014.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00886
YP_884015.1	identified by match to protein family HMM PF00440
YP_884016.1	identified by match to protein family HMM PF01497
YP_884017.1	identified by match to protein family HMM PF02682
YP_884018.1	identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724
YP_884020.1	identified by match to protein family HMM PF07690
YP_884021.1	catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane
YP_884022.1	identified by match to protein family HMM PF01903
YP_884024.1	identified by match to protein family HMM PF00355; match to protein family HMM TIGR02378
YP_884025.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374
YP_884027.1	identified by match to protein family HMM PF00011
YP_884030.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol
YP_884031.1	catalyzes the fumarate and succinate interconversion; fumarate reductase is used under anaerobic conditions with glucose or glycerol as carbon source
YP_884033.1	identified by match to protein family HMM PF01613
YP_884034.1	identified by match to protein family HMM PF03171
YP_884035.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_884036.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_884037.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_884038.1	identified by match to protein family HMM PF01575
YP_884039.1	identified by match to protein family HMM PF00654
YP_884040.1	identified by match to protein family HMM PF00440
YP_884041.1	identified by match to protein family HMM PF00933
YP_884045.1	identified by match to protein family HMM PF06762
YP_884046.1	identified by match to protein family HMM PF00732; match to protein family HMM PF05199
YP_884047.1	identified by similarity to SP:P26901; match to protein family HMM PF00199
YP_884048.1	identified by similarity to SP:P26901; match to protein family HMM PF00199
YP_884051.1	Catalyzes the reversible two-electron oxidation of formate to carbon dioxide. It allows the assimilation of carbon dioxide and provides energy for growth through oxidative phosphorylation coupled to the reduction of oxygen, nitrate, sulphate or fumarate
YP_884053.1	identified by match to protein family HMM PF00903
YP_884055.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_884056.1	catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis
YP_884057.1	NADP-dependent semialdehyde dehydrogenase; part of alternative pathway from alpha-ketoglutarate to succinate
YP_884058.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_884059.1	identified by match to protein family HMM PF00440
YP_884060.1	identified by match to protein family HMM PF00441
YP_884061.1	identified by match to protein family HMM PF02126
YP_884062.1	identified by match to protein family HMM PF01757
YP_884065.1	identified by match to protein family HMM PF00534
YP_884067.1	identified by match to protein family HMM PF00171
YP_884069.1	identified by match to protein family HMM PF00440
YP_884071.1	identified by match to protein family HMM PF00501
YP_884072.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_884073.1	identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946
YP_884074.1	identified by match to protein family HMM PF07859
YP_884075.1	identified by match to protein family HMM PF07859
YP_884076.1	identified by match to protein family HMM PF07969
YP_884079.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_884081.1	identified by match to protein family HMM PF00378
YP_884082.1	activates fatty acids by binding to coenzyme A
YP_884083.1	identified by match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00254
YP_884084.1	catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP
YP_884087.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_884090.1	identified by match to protein family HMM PF01594
YP_884091.1	identified by match to protein family HMM PF03706; match to protein family HMM TIGR00374
YP_884098.1	identified by match to protein family HMM PF01431; match to protein family HMM PF05649
YP_884099.1	identified by match to protein family HMM PF00210
YP_884100.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_884101.1	identified by match to protein family HMM PF00732; match to protein family HMM PF05199
YP_884102.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_884103.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_884104.1	identified by match to protein family HMM PF00561
YP_884105.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879
YP_884106.1	identified by match to protein family HMM PF00440
YP_884107.1	identified by match to protein family HMM PF03734
YP_884108.1	identified by match to protein family HMM PF07690
YP_884109.1	identified by match to protein family HMM PF02583
YP_884110.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_884111.1	identified by similarity to GB:AAF98273.1; match to protein family HMM PF03060
YP_884112.1	identified by match to protein family HMM PF01596
YP_884114.1	identified by match to protein family HMM PF00933; match to protein family HMM PF01915
YP_884117.1	identified by match to protein family HMM PF00561
YP_884118.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_884120.1	identified by match to protein family HMM PF01113
YP_884122.1	identified by match to protein family HMM PF02678
YP_884123.1	identified by match to protein family HMM PF01061
YP_884125.1	identified by match to protein family HMM PF06912
YP_884128.1	identified by match to protein family HMM PF06271
YP_884131.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_884132.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_884133.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_884134.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_884135.1	identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996
YP_884136.1	identified by match to protein family HMM PF02405
YP_884137.1	identified by match to protein family HMM PF02405
YP_884138.1	activates fatty acids by binding to coenzyme A
YP_884139.1	identified by match to protein family HMM PF00392
YP_884140.1	similar to streptomyces cyclase/dehydrase; identified by match to protein family HMM PF03364
YP_884141.1	identified by match to protein family HMM PF03061
YP_884142.1	identified by match to protein family HMM PF00107
YP_884144.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851
YP_884147.1	identified by match to protein family HMM PF02384
YP_884149.1	identified by match to protein family HMM PF00872
YP_884151.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_884152.1	identified by match to protein family HMM PF03781
YP_884153.1	identified by match to protein family HMM PF02371
YP_884154.1	identified by match to protein family HMM PF01527
YP_884155.1	identified by match to protein family HMM PF00665
YP_884158.1	identified by match to protein family HMM PF00872
YP_884159.1	identified by match to protein family HMM PF00872
YP_884166.1	identified by match to protein family HMM PF02470
YP_884167.1	identified by match to protein family HMM PF02470
YP_884168.1	identified by match to protein family HMM PF02470
YP_884169.1	identified by match to protein family HMM PF02470
YP_884170.1	identified by match to protein family HMM PF02470
YP_884172.1	identified by match to protein family HMM PF02405
YP_884173.1	identified by match to protein family HMM PF00440; match to protein family HMM PF02909
YP_884174.1	identified by match to protein family HMM PF00391
YP_884177.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_884178.1	identified by match to protein family HMM PF01636
YP_884179.1	identified by match to protein family HMM PF00296
YP_884180.1	identified by match to protein family HMM PF00391
YP_884182.1	identified by match to protein family HMM PF00440
YP_884184.1	identified by match to protein family HMM PF00440
YP_884186.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_884187.1	identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930
YP_884188.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_884190.1	identified by match to protein family HMM PF00037; match to protein family HMM PF07992
YP_884192.1	identified by match to protein family HMM PF03328
YP_884193.1	identified by match to protein family HMM PF01636
YP_884194.1	identified by match to protein family HMM PF00501
YP_884195.1	identified by match to protein family HMM PF00501
YP_884196.1	identified by match to protein family HMM PF00106
YP_884197.1	identified by match to protein family HMM PF00108
YP_884198.1	identified by match to protein family HMM PF01796
YP_884199.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_884201.1	identified by match to protein family HMM PF00866
YP_884202.1	identified by match to protein family HMM PF00355; match to protein family HMM PF00848
YP_884203.1	identified by match to protein family HMM PF00378
YP_884204.1	identified by match to protein family HMM PF00378
YP_884205.1	identified by match to protein family HMM PF00378
YP_884206.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_884207.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF07993
YP_884208.1	identified by match to protein family HMM PF01266
YP_884211.1	identified by match to protein family HMM PF00665
YP_884213.1	identified by match to protein family HMM PF00171
YP_884214.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_884216.1	activates fatty acids by binding to coenzyme A
YP_884218.1	identified by match to protein family HMM PF00005
YP_884221.1	identified by match to protein family HMM PF00872
YP_884222.1	identified by match to protein family HMM PF00027
YP_884223.1	identified by match to protein family HMM PF03971; match to protein family HMM TIGR00178
YP_884224.1	catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP
YP_884226.1	identified by match to protein family HMM PF01022
YP_884227.1	identified by match to protein family HMM PF00329
YP_884228.1	identified by match to protein family HMM PF00361
YP_884230.1	identified by match to protein family HMM PF00146
YP_884231.1	identified by match to protein family HMM PF00361
YP_884232.1	identified by match to protein family HMM PF01058
YP_884233.1	identified by match to protein family HMM PF00872
YP_884235.1	identified by match to protein family HMM PF07859
YP_884236.1	identified by match to protein family HMM PF01266
YP_884237.1	identified by match to protein family HMM PF00106
YP_884238.1	identified by match to protein family HMM PF03328
YP_884239.1	identified by match to protein family HMM PF00107
YP_884240.1	identified by match to protein family HMM PF00067
YP_884243.1	identified by match to protein family HMM PF02515
YP_884244.1	identified by match to protein family HMM PF04248
YP_884245.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_884246.1	identified by match to protein family HMM PF00296
YP_884249.1	identified by match to protein family HMM PF03758
YP_884251.1	identified by match to protein family HMM PF00440
YP_884252.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913
YP_884253.1	identified by match to protein family HMM PF00106
YP_884254.1	identified by match to protein family HMM PF01113; match to protein family HMM PF03447
YP_884255.1	identified by match to protein family HMM PF00440
YP_884257.1	identified by match to protein family HMM PF02233
YP_884259.1	identified by match to protein family HMM PF01262; match to protein family HMM PF05222
YP_884260.1	identified by match to protein family HMM PF07080
YP_884261.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_884263.1	identified by match to protein family HMM PF00106
YP_884264.1	identified by match to protein family HMM PF00171
YP_884265.1	identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_884266.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_884267.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_884268.1	identified by match to protein family HMM PF00440
YP_884269.1	identified by match to protein family HMM PF02678; match to protein family HMM PF05726
YP_884270.1	identified by match to protein family HMM PF00210
YP_884273.1	identified by match to protein family HMM PF04248
YP_884274.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993
YP_884276.2	this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress
YP_884277.1	identified by match to protein family HMM PF00067
YP_884278.1	identified by match to protein family HMM PF00440
YP_884279.1	identified by match to protein family HMM PF03459; match to protein family HMM TIGR00638
YP_884280.1	identified by match to protein family HMM PF00561
YP_884282.1	identified by match to protein family HMM PF00440
YP_884284.1	identified by match to protein family HMM PF00487
YP_884285.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF08021
YP_884286.1	identified by match to protein family HMM PF00440
YP_884288.1	identified by match to protein family HMM PF00583
YP_884289.1	identified by match to protein family HMM PF00296; match to protein family HMM PF01590; match to protein family HMM PF03861
YP_884290.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_884291.1	identified by match to protein family HMM PF01575
YP_884292.1	identified by match to protein family HMM PF00561
YP_884294.1	identified by match to protein family HMM PF03625
YP_884295.1	identified by match to protein family HMM PF02583
YP_884296.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040
YP_884297.1	identified by match to protein family HMM PF01047
YP_884298.1	identified by match to protein family HMM PF00005
YP_884299.1	identified by match to protein family HMM PF01061
YP_884300.1	identified by match to protein family HMM PF00756
YP_884301.1	identified by match to protein family HMM PF06912
YP_884303.1	identified by match to protein family HMM PF00128; match to protein family HMM TIGR02456
YP_884304.1	identified by match to protein family HMM PF00089; match to protein family HMM PF00595
YP_884305.1	identified by match to protein family HMM PF01243
YP_884306.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_884307.1	activates fatty acids by binding to coenzyme A
YP_884308.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_884309.1	identified by match to protein family HMM PF00857
YP_884310.1	identified by match to protein family HMM PF03734
YP_884312.1	identified by match to protein family HMM PF00107
YP_884313.1	identified by match to protein family HMM PF01566
YP_884316.1	identified by match to protein family HMM PF01596
YP_884317.1	identified by match to protein family HMM PF01757
YP_884318.1	identified by match to protein family HMM PF00171
YP_884319.1	identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776
YP_884320.1	identified by match to protein family HMM PF02515
YP_884321.1	identified by match to protein family HMM PF00106
YP_884322.1	identified by match to protein family HMM PF01266
YP_884323.1	identified by match to protein family HMM PF00355
YP_884324.1	identified by match to protein family HMM PF00106
YP_884326.1	identified by match to protein family HMM PF01436
YP_884327.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_884328.1	identified by match to protein family HMM PF00501
YP_884329.1	identified by match to protein family HMM PF00106
YP_884330.1	identified by match to protein family HMM PF00107
YP_884335.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494
YP_884336.1	activates fatty acids by binding to coenzyme A
YP_884337.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_884340.1	identified by match to protein family HMM PF00106
YP_884342.1	identified by match to protein family HMM PF00440
YP_884343.1	identified by match to protein family HMM PF00211; match to protein family HMM PF00561
YP_884344.1	identified by match to protein family HMM PF01209
YP_884347.1	identified by match to protein family HMM PF01370
YP_884350.1	identified by match to protein family HMM PF00107
YP_884351.1	identified by match to protein family HMM TIGR02246
YP_884352.1	identified by match to protein family HMM PF00106
YP_884353.1	identified by match to protein family HMM PF01699
YP_884354.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_884356.1	identified by match to protein family HMM PF01243
YP_884358.1	identified by match to protein family HMM PF00106
YP_884359.1	identified by match to protein family HMM PF00403
YP_884360.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525
YP_884361.1	identified by match to protein family HMM PF01522
YP_884362.1	identified by match to protein family HMM PF01047
YP_884364.1	identified by similarity to SP:O94091; match to protein family HMM PF03583
YP_884366.1	identified by match to protein family HMM PF00440
YP_884367.1	identified by match to protein family HMM PF00561
YP_884368.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_884369.1	activates fatty acids by binding to coenzyme A
YP_884371.1	identified by match to protein family HMM PF01796
YP_884374.1	identified by match to protein family HMM PF02515
YP_884375.1	identified by match to protein family HMM PF04909
YP_884376.1	identified by match to protein family HMM PF00356
YP_884377.1	identified by match to protein family HMM PF01796
YP_884379.1	identified by match to protein family HMM PF00440
YP_884382.1	identified by match to protein family HMM PF02641
YP_884383.1	catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis
YP_884384.1	identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377
YP_884385.1	identified by match to protein family HMM PF01636
YP_884387.1	identified by match to protein family HMM PF00440
YP_884388.1	identified by match to protein family HMM PF01636
YP_884389.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07908; match to protein family HMM PF07969
YP_884390.1	identified by match to protein family HMM PF00355
YP_884392.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545
YP_884393.1	identified by match to protein family HMM PF02518; match to protein family HMM PF07730
YP_884395.1	identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833
YP_884396.1	identified by match to protein family HMM PF05108
YP_884397.1	identified by match to protein family HMM PF01464
YP_884403.1	identified by match to protein family HMM PF06259
YP_884405.1	identified by match to protein family HMM PF01743; match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR02692
YP_884407.1	identified by match to protein family HMM PF00293
YP_884408.1	identified by match to protein family HMM PF03023
YP_884409.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription: in Mycobacterium bovis this protein has been shown to be active at high temperatures and during stationary phase
YP_884411.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292
YP_884412.1	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068
YP_884413.1	identified by match to protein family HMM PF01471; match to protein family HMM PF01520
YP_884416.1	identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180
YP_884417.1	identified by match to protein family HMM PF01656
YP_884418.1	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_884419.1	identified by match to protein family HMM PF01424
YP_884420.1	functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria
YP_884421.1	identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278
YP_884422.1	protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates
YP_884423.1	in Escherichia coli transcription of this gene is enhanced by polyamines