-- dump date 20140619_153734 -- class Genbank::CDS -- table cds_note -- id note YP_884424.1 binds the polymerase to DNA and acts as a sliding clamp YP_884425.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate YP_884426.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_884427.1 RecF-gyrB intergenic region protein; identified by match to protein family HMM PF05258 YP_884428.1 negatively supercoils closed circular double-stranded DNA YP_884429.1 negatively supercoils closed circular double-stranded DNA YP_884432.1 identified by match to protein family HMM PF04954; match to protein family HMM PF08021 YP_884433.1 identified by match to protein family HMM PF01032 YP_884434.1 identified by match to protein family HMM PF00005 YP_884435.1 identified by match to protein family HMM PF00551; match to protein family HMM PF02911 YP_884436.1 identified by match to protein family HMM PF03621 YP_884437.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_884438.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_884439.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733 YP_884440.1 identified by match to protein family HMM PF01497 YP_884441.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_884444.1 identified by match to protein family HMM PF00160 YP_884446.1 integral membrane protein involved in inhibition of the Z-ring formation YP_884447.1 identified by match to protein family HMM PF05949 YP_884448.1 aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity YP_884449.1 identified by match to protein family HMM PF00069; match to protein family HMM PF03793 YP_884450.1 identified by match to protein family HMM PF00069 YP_884451.1 identified by match to protein family HMM PF00905 YP_884452.1 identified by match to protein family HMM PF01098 YP_884453.1 identified by match to protein family HMM PF00481 YP_884454.1 identified by match to protein family HMM PF00498 YP_884455.1 identified by match to protein family HMM PF00498 YP_884460.1 identified by match to protein family HMM PF00440 YP_884461.1 identified by match to protein family HMM PF02900 YP_884466.1 identified by match to protein family HMM PF01243 YP_884467.1 identified by match to protein family HMM PF02678; match to protein family HMM PF05726 YP_884469.1 identified by match to protein family HMM PF02467 YP_884471.1 identified by similarity to GB:CAD18826.1 YP_884477.1 identified by match to protein family HMM PF00004 YP_884478.1 identified by match to protein family HMM PF05108 YP_884479.1 identified by match to protein family HMM PF01580 YP_884480.1 identified by match to protein family HMM PF01580 YP_884482.1 identified by match to protein family HMM PF00823 YP_884486.1 identified by match to protein family HMM PF04600; match to protein family HMM TIGR02958 YP_884490.1 identified by similarity to GP:2935133; match to protein family HMM PF01609 YP_884499.1 identified by match to protein family HMM PF00082 YP_884500.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_884501.1 identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427 YP_884502.1 identified by match to protein family HMM PF00294 YP_884503.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220 YP_884504.1 identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 YP_884505.1 identified by match to protein family HMM PF02678; match to protein family HMM PF05726 YP_884508.1 identified by match to protein family HMM PF00440 YP_884509.1 identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027 YP_884510.1 identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027 YP_884512.1 identified by match to protein family HMM PF00106 YP_884513.1 identified by match to protein family HMM PF00107 YP_884514.1 identified by match to protein family HMM PF01209 YP_884518.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_884519.1 identified by match to protein family HMM PF07690 YP_884520.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_884521.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_884522.1 identified by match to protein family HMM PF02518 YP_884523.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_884524.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_884525.1 identified by similarity to SP:P07002; match to protein family HMM PF02233 YP_884526.1 forms a tetramer composed of 2 subunit alphas and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm YP_884527.1 identified by match to protein family HMM PF01544 YP_884529.1 identified by match to protein family HMM PF00528 YP_884530.1 identified by match to protein family HMM PF04069 YP_884531.1 identified by match to protein family HMM PF00005 YP_884532.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493 YP_884533.1 identified by match to protein family HMM PF00561 YP_884534.1 identified by match to protein family HMM PF07336 YP_884536.1 identified by match to protein family HMM PF00440 YP_884537.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_884538.1 identified by match to protein family HMM PF03401 YP_884540.1 identified by match to protein family HMM PF01970 YP_884541.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_884542.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_884543.1 identified by match to protein family HMM PF00107 YP_884544.1 identified by match to protein family HMM PF03061 YP_884545.1 similar to Streptomyces cyclase/dehydrase; identified by match to protein family HMM PF03364 YP_884546.1 identified by match to protein family HMM PF00392 YP_884547.1 activates fatty acids by binding to coenzyme A YP_884548.1 identified by match to protein family HMM PF02405 YP_884549.1 identified by match to protein family HMM PF02405 YP_884550.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_884551.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_884552.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_884553.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_884554.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_884555.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_884557.1 identified by match to protein family HMM PF06271 YP_884560.1 identified by match to protein family HMM PF06912 YP_884561.1 identified by match to protein family HMM PF01844; match to protein family HMM PF02720 YP_884562.1 identified by match to protein family HMM PF03473 YP_884564.1 identified by match to protein family HMM PF00440 YP_884565.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_884566.1 identified by match to protein family HMM PF02233 YP_884568.1 identified by match to protein family HMM PF01262; match to protein family HMM PF05222 YP_884569.1 Ketopantoate reductase; catalyzes the NADPH reduction of Ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis YP_884570.1 identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064 YP_884571.1 identified by match to protein family HMM PF00989; match to protein family HMM TIGR00229 YP_884572.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_884573.1 catalyzes the formation of formyl-CoA from oxalyl-CoA YP_884574.1 catalyzes the formation of oxalyl-CoA from oxalate and Formyl-CoA YP_884575.1 identified by similarity to GB:CAA11233.1; match to protein family HMM PF01257 YP_884576.1 identified by similarity to GB:CAA11234.1; match to protein family HMM PF01512 YP_884577.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591 YP_884580.1 identified by match to protein family HMM PF07690 YP_884581.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth YP_884582.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_884583.1 identified by match to protein family HMM PF07690 YP_884584.1 catalyzes the formation of oxalyl-CoA from oxalate and Formyl-CoA YP_884586.1 identified by match to protein family HMM PF07690 YP_884587.1 identified by match to protein family HMM PF00850 YP_884590.1 identified by match to protein family HMM PF02656 YP_884591.1 identified by match to protein family HMM PF01266 YP_884592.1 identified by match to protein family HMM PF00497 YP_884593.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_884594.1 identified by match to protein family HMM PF00005 YP_884595.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_884596.1 identified by match to protein family HMM PF00440 YP_884597.1 identified by match to protein family HMM PF02668 YP_884598.1 identified by match to protein family HMM PF00561; match to protein family HMM PF06441 YP_884599.1 identified by match to protein family HMM PF01019 YP_884601.1 identified by match to protein family HMM PF03176 YP_884602.1 identified by match to protein family HMM PF05423 YP_884603.1 identified by match to protein family HMM PF01047 YP_884604.1 identified by match to protein family HMM PF00583 YP_884605.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_884606.1 identified by match to protein family HMM PF00474 YP_884607.1 identified by match to protein family HMM PF01869 YP_884608.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_884609.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway YP_884610.1 identified by match to protein family HMM PF01083 YP_884611.1 identified by match to protein family HMM PF01266; match to protein family HMM PF07992 YP_884612.1 identified by match to protein family HMM PF00296 YP_884613.1 identified by match to protein family HMM PF00293 YP_884614.1 identified by match to protein family HMM PF08028 YP_884617.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_884618.1 identified by similarity to GP:150004; match to protein family HMM PF07929 YP_884620.1 identified by match to protein family HMM PF03992 YP_884621.1 identified by match to protein family HMM PF01047; match to protein family HMM PF01978 YP_884622.1 identified by match to protein family HMM PF01757 YP_884623.1 identified by match to protein family HMM PF00545 YP_884626.1 identified by match to protein family HMM PF00005 YP_884627.1 identified by match to protein family HMM PF00903 YP_884628.1 identified by match to protein family HMM PF00165 YP_884630.1 identified by match to protein family HMM PF02678 YP_884631.1 identified by match to protein family HMM PF00106 YP_884632.1 identified by match to protein family HMM PF00107 YP_884633.1 identified by match to protein family HMM PF06983 YP_884634.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_884635.1 identified by match to protein family HMM PF00561 YP_884639.1 identified by match to protein family HMM PF01135; match to protein family HMM PF01596 YP_884640.1 identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833 YP_884641.1 identified by match to protein family HMM PF05423 YP_884642.1 identified by match to protein family HMM PF00440 YP_884643.1 identified by match to protein family HMM PF00211 YP_884644.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_884645.1 identified by match to protein family HMM PF02583 YP_884646.1 identified by match to protein family HMM PF01910; match to protein family HMM TIGR00106 YP_884647.1 identified by match to protein family HMM PF07690 YP_884648.1 identified by match to protein family HMM PF03734 YP_884649.1 identified by match to protein family HMM PF01431; match to protein family HMM PF05649 YP_884652.1 identified by similarity to GP:4838457; match to protein family HMM PF01609 YP_884653.1 identified by match to protein family HMM PF02629 YP_884654.1 identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326 YP_884656.1 identified by match to protein family HMM PF03176 YP_884659.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_884660.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_884662.1 identified by match to protein family HMM PF01551 YP_884663.1 identified by match to protein family HMM PF03706; match to protein family HMM TIGR00374 YP_884664.1 identified by match to protein family HMM PF01594 YP_884667.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_884670.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP YP_884672.1 activates fatty acids by binding to coenzyme A YP_884673.1 identified by match to protein family HMM PF00378 YP_884674.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_884678.1 identified by match to protein family HMM PF07969 YP_884679.1 identified by match to protein family HMM PF07690 YP_884680.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03711 YP_884681.1 identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758 YP_884682.1 identified by match to protein family HMM PF07859 YP_884683.1 identified by match to protein family HMM PF00392; match to protein family HMM PF02082; match to protein family HMM PF07702 YP_884684.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_884685.1 identified by match to protein family HMM PF01636 YP_884687.1 identified by match to protein family HMM PF00936 YP_884688.1 identified by match to protein family HMM PF03319 YP_884690.1 identified by match to protein family HMM PF00936 YP_884691.1 identified by match to protein family HMM PF00171 YP_884692.1 identified by match to protein family HMM PF00202 YP_884693.1 identified by match to protein family HMM PF00324 YP_884695.1 identified by match to protein family HMM PF07859 YP_884696.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_884697.1 identified by match to protein family HMM PF07110; match to protein family HMM TIGR02118 YP_884698.1 identified by match to protein family HMM PF00106 YP_884699.1 identified by match to protein family HMM PF02525 YP_884700.1 identified by match to protein family HMM PF00440 YP_884701.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_884703.1 identified by match to protein family HMM PF01266 YP_884704.1 identified by match to protein family HMM PF07859 YP_884705.1 identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946 YP_884706.1 identified by match to protein family HMM PF02668 YP_884708.1 identified by match to protein family HMM PF00355 YP_884709.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370 YP_884710.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_884711.1 identified by match to protein family HMM PF01047 YP_884712.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_884714.1 identified by match to protein family HMM PF00355 YP_884715.1 identified by match to protein family HMM PF04909 YP_884716.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_884717.1 identified by match to protein family HMM PF00107 YP_884718.1 identified by match to protein family HMM PF00326; match to protein family HMM PF07859 YP_884719.1 activates fatty acids by binding to coenzyme A YP_884720.1 identified by match to protein family HMM PF01553 YP_884721.1 identified by match to protein family HMM PF00797 YP_884724.1 identified by match to protein family HMM PF00171 YP_884725.1 identified by match to protein family HMM PF00534 YP_884726.1 identified by similarity to SP:P10177; match to protein family HMM PF01081; match to protein family HMM TIGR01182 YP_884727.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate YP_884728.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_884729.1 identified by match to protein family HMM PF00480 YP_884732.1 identified by match to protein family HMM PF01757 YP_884733.1 identified by match to protein family HMM PF00501 YP_884734.1 identified by match to protein family HMM PF02126 YP_884735.1 identified by match to protein family HMM PF00196; match to protein family HMM PF07721 YP_884736.1 identified by match to protein family HMM PF08028 YP_884737.1 identified by match to protein family HMM PF07366; match to protein family HMM TIGR02096 YP_884738.1 identified by match to protein family HMM TIGR02096 YP_884739.1 identified by match to protein family HMM PF00501 YP_884740.1 identified by match to protein family HMM PF00171 YP_884742.1 identified by match to protein family HMM PF01613 YP_884743.1 identified by match to protein family HMM PF00196 YP_884744.1 identified by match to protein family HMM PF00196; match to protein family HMM PF01590 YP_884745.1 identified by match to protein family HMM PF03060 YP_884746.1 identified by match to protein family HMM PF01039 YP_884747.1 identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF01071; match to protein family HMM PF02785; match to protein family HMM PF02786 YP_884748.1 identified by match to protein family HMM PF00378 YP_884749.1 identified by match to protein family HMM TIGR03083; match to protein family HMM TIGR03084 YP_884750.1 identified by match to protein family HMM PF07287 YP_884751.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_884752.1 identified by match to protein family HMM PF00296 YP_884753.1 identified by match to protein family HMM PF00378 YP_884754.1 identified by match to protein family HMM PF00296 YP_884756.1 identified by match to protein family HMM PF00440 YP_884757.1 identified by match to protein family HMM PF02405 YP_884758.1 identified by match to protein family HMM PF02405 YP_884759.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_884760.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_884761.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_884762.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_884763.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_884764.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_884767.1 identified by match to protein family HMM PF05305 YP_884770.1 identified by match to protein family HMM PF05977; match to protein family HMM PF07690 YP_884771.1 Catalyzes the rate-limiting step in dNTP synthesis YP_884774.1 identified by match to protein family HMM PF00933 YP_884775.1 identified by match to protein family HMM PF04909 YP_884776.1 identified by match to protein family HMM PF00440 YP_884778.1 identified by match to protein family HMM PF06259 YP_884780.1 identified by match to protein family HMM PF00891 YP_884784.1 identified by match to protein family HMM PF01575 YP_884785.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_884786.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_884787.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_884788.1 identified by match to protein family HMM PF00614 YP_884789.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_884791.1 identified by match to protein family HMM PF02979; match to protein family HMM TIGR01323 YP_884793.1 identified by match to protein family HMM PF05423 YP_884794.1 identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833 YP_884795.1 identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833 YP_884797.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207 YP_884798.1 identified by match to protein family HMM PF03033 YP_884799.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_884801.1 identified by match to protein family HMM PF05711 YP_884802.1 identified by match to protein family HMM PF03033 YP_884803.1 identified by match to protein family HMM PF01757 YP_884805.1 identified by match to protein family HMM PF03033 YP_884810.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_884811.1 identified by similarity to GP:150004; match to protein family HMM PF07929 YP_884812.1 identified by match to protein family HMM PF03621 YP_884813.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733 YP_884814.1 identified by match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720 YP_884815.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733; match to protein family HMM TIGR01746 YP_884817.1 identified by match to protein family HMM PF04946 YP_884818.1 identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937 YP_884819.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_884820.1 identified by match to protein family HMM PF01113 YP_884821.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801 YP_884822.1 identified by match to protein family HMM PF00668 YP_884823.1 identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833 YP_884824.1 activates fatty acids by binding to coenzyme A YP_884827.1 identified by match to protein family HMM PF03171 YP_884828.1 identified by match to protein family HMM PF01613 YP_884830.1 catalyzes the fumarate and succinate interconversion; fumarate reductase is used under anaerobic conditions with glucose or glycerol as carbon source YP_884831.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_884837.1 identified by match to protein family HMM PF00011 YP_884838.1 identified by match to protein family HMM PF00892 YP_884839.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_884840.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374 YP_884843.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_884844.1 identified by match to protein family HMM PF01903 YP_884845.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane YP_884846.1 identified by match to protein family HMM PF07690 YP_884847.1 identified by match to protein family HMM PF00583 YP_884848.1 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724 YP_884849.1 identified by match to protein family HMM PF02682 YP_884850.1 identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697 YP_884851.1 identified by match to protein family HMM PF01497 YP_884852.1 identified by match to protein family HMM PF03601 YP_884854.1 identified by match to protein family HMM TIGR03083 YP_884855.1 identified by match to protein family HMM PF02909 YP_884856.1 identified by match to protein family HMM PF00795 YP_884857.1 identified by match to protein family HMM PF04371 YP_884858.1 identified by match to protein family HMM PF07969 YP_884859.1 identified by match to protein family HMM PF00324 YP_884860.1 identified by match to protein family HMM PF02566 YP_884861.1 identified by match to protein family HMM PF01047 YP_884862.1 identified by match to protein family HMM PF00582; match to protein family HMM PF07690 YP_884865.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791 YP_884866.1 identified by match to protein family HMM PF01202; match to protein family HMM TIGR01313 YP_884867.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_884868.1 identified by match to protein family HMM PF00171 YP_884869.1 identified by match to protein family HMM PF00521; match to protein family HMM PF03989 YP_884870.1 identified by match to protein family HMM PF00986; match to protein family HMM PF02518 YP_884871.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_884872.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_884873.1 identified by match to protein family HMM PF00561 YP_884874.1 identified by match to protein family HMM PF01205 YP_884875.1 identified by match to protein family HMM PF05423 YP_884876.1 identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833 YP_884877.1 identified by match to protein family HMM PF00440 YP_884878.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine YP_884880.1 identified by match to protein family HMM PF01810; match to protein family HMM TIGR00948 YP_884881.1 identified by match to protein family HMM PF00583; match to protein family HMM PF01047 YP_884882.1 identified by match to protein family HMM PF00892 YP_884883.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_884884.1 identified by match to protein family HMM PF00135 YP_884886.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_884887.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01380 YP_884888.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_884889.1 identified by match to protein family HMM PF00535; match to protein family HMM PF03142 YP_884890.1 identified by match to protein family HMM PF01522 YP_884893.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_884894.1 identified by match to protein family HMM PF01266 YP_884895.1 identified by match to protein family HMM PF00920 YP_884896.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_884897.1 identified by match to protein family HMM PF03069 YP_884898.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_884900.1 identified by match to protein family HMM PF00528 YP_884901.1 identified by match to protein family HMM PF00005 YP_884902.1 identified by match to protein family HMM PF02515 YP_884903.1 identified by match to protein family HMM PF00378 YP_884904.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_884909.1 identified by match to protein family HMM PF02286 YP_884911.1 identified by match to protein family HMM PF00324 YP_884912.1 identified by match to protein family HMM PF07905 YP_884913.1 identified by match to protein family HMM PF01182 YP_884914.1 identified by match to protein family HMM PF02056 YP_884915.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220 YP_884916.1 identified by match to protein family HMM PF00294 YP_884917.1 identified by match to protein family HMM PF01547 YP_884918.1 identified by match to protein family HMM PF00528 YP_884919.1 identified by match to protein family HMM PF00528 YP_884920.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459 YP_884921.1 identified by match to protein family HMM PF00455; match to protein family HMM PF01022; match to protein family HMM PF08220 YP_884922.1 identified by match to protein family HMM PF08013; match to protein family HMM TIGR02810 YP_884923.1 identified by match to protein family HMM PF01380 YP_884924.1 identified by match to protein family HMM PF01869 YP_884925.1 identified by match to protein family HMM PF00892 YP_884926.1 identified by match to protein family HMM PF02056 YP_884927.1 identified by match to protein family HMM PF01547 YP_884928.1 identified by match to protein family HMM PF00528 YP_884929.1 identified by match to protein family HMM PF00528 YP_884930.1 identified by match to protein family HMM PF00005 YP_884935.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_884937.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_884938.1 identified by match to protein family HMM PF00106 YP_884939.1 identified by match to protein family HMM PF00296 YP_884940.1 identified by match to protein family HMM PF00069; match to protein family HMM PF07721 YP_884941.1 identified by match to protein family HMM PF00106 YP_884942.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_884943.1 identified by match to protein family HMM PF00440 YP_884945.1 identified by match to protein family HMM PF07690 YP_884946.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_884947.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382 YP_884949.1 identified by match to protein family HMM PF01047 YP_884950.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_884951.1 identified by match to protein family HMM PF04299 YP_884953.1 identified by match to protein family HMM PF03861 YP_884954.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_884958.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport YP_884959.1 identified by similarity to GB:CAD18826.1 YP_884960.1 identified by match to protein family HMM PF00528 YP_884961.1 identified by match to protein family HMM TIGR01728 YP_884962.1 identified by match to protein family HMM PF00005 YP_884963.1 identified by match to protein family HMM PF02566 YP_884964.1 identified by match to protein family HMM PF01547 YP_884965.1 identified by match to protein family HMM PF00528 YP_884966.1 identified by match to protein family HMM PF00528 YP_884967.1 identified by match to protein family HMM PF00005 YP_884970.1 identified by match to protein family HMM PF00313 YP_884971.1 identified by match to protein family HMM PF01113 YP_884972.1 identified by match to protein family HMM PF00440; match to protein family HMM PF02909 YP_884974.1 identified by match to protein family HMM PF05661 YP_884975.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_884976.1 identified by match to protein family HMM PF00534 YP_884977.1 identified by match to protein family HMM PF00795 YP_884978.1 identified by match to protein family HMM PF00583; match to protein family HMM PF02769 YP_884979.1 identified by match to protein family HMM PF04055 YP_884980.1 identified by match to protein family HMM PF07992 YP_884982.1 identified by match to protein family HMM PF00795 YP_884984.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_884985.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_884986.1 identified by match to protein family HMM PF05423 YP_884987.1 identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833 YP_884988.1 identified by match to protein family HMM PF07690 YP_884989.1 identified by match to protein family HMM PF02770 YP_884991.1 identified by match to protein family HMM PF02954; match to protein family HMM PF07905 YP_884992.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR00700 YP_884993.1 identified by match to protein family HMM PF00171 YP_884996.1 identified by match to protein family HMM PF02515 YP_884997.1 identified by match to protein family HMM PF01740 YP_884998.1 identified by match to protein family HMM PF05336 YP_884999.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_885000.1 identified by match to protein family HMM TIGR02635 YP_885001.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00596; match to protein family HMM TIGR02632 YP_885002.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_885003.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_885004.1 identified by match to protein family HMM PF02589 YP_885005.1 identified by match to protein family HMM TIGR00273 YP_885006.1 identified by match to protein family HMM PF02754 YP_885007.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_885010.1 activates fatty acids by binding to coenzyme A YP_885011.1 identified by match to protein family HMM PF00106 YP_885014.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_885015.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_885017.1 identified by match to protein family HMM PF00440 YP_885018.1 identified by match to protein family HMM PF00903 YP_885019.1 identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027 YP_885020.1 identified by match to protein family HMM PF01381 YP_885021.1 identified by match to protein family HMM PF00753 YP_885022.1 identified by match to protein family HMM PF00135 YP_885023.1 identified by match to protein family HMM PF00440 YP_885025.1 identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027 YP_885026.1 identified by match to protein family HMM PF00004 YP_885027.1 identified by match to protein family HMM PF05108 YP_885028.1 identified by match to protein family HMM PF01580 YP_885029.1 identified by match to protein family HMM PF00934 YP_885030.1 identified by match to protein family HMM PF00823 YP_885034.1 identified by match to protein family HMM PF04600; match to protein family HMM TIGR02958 YP_885035.1 identified by match to protein family HMM PF00082 YP_885038.1 identified by match to protein family HMM PF02366 YP_885039.1 identified by match to protein family HMM PF04909 YP_885040.1 catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate YP_885043.1 identified by match to protein family HMM PF01569 YP_885044.1 identified by match to protein family HMM PF00781; match to protein family HMM PF01569 YP_885047.1 identified by match to protein family HMM PF00355; match to protein family HMM PF01266 YP_885049.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_885050.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_885051.1 identified by match to protein family HMM PF00528 YP_885052.1 identified by match to protein family HMM PF00528 YP_885053.1 identified by match to protein family HMM PF00496 YP_885054.1 identified by match to protein family HMM PF07883 YP_885055.1 identified by match to protein family HMM PF00722 YP_885056.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097 YP_885058.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02315 YP_885059.1 identified by match to protein family HMM TIGR01098 YP_885060.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_885063.1 identified by match to protein family HMM PF00296 YP_885064.1 identified by match to protein family HMM PF00106 YP_885065.1 identified by match to protein family HMM PF00440 YP_885066.1 identified by match to protein family HMM PF00355 YP_885067.1 identified by match to protein family HMM PF00528 YP_885068.1 identified by match to protein family HMM PF00528 YP_885069.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409 YP_885070.1 identified by match to protein family HMM PF00202 YP_885071.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM TIGR01187 YP_885072.1 identified by match to protein family HMM PF00440 YP_885073.1 identified by match to protein family HMM PF01266 YP_885074.1 identified by match to protein family HMM PF02629 YP_885075.1 identified by match to protein family HMM PF01266 YP_885076.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_885078.1 identified by match to protein family HMM PF03486; match to protein family HMM PF07992 YP_885080.1 identified by match to protein family HMM PF00107 YP_885083.1 identified by match to protein family HMM PF03734 YP_885084.1 identified by match to protein family HMM PF00067 YP_885085.1 identified by match to protein family HMM PF00440 YP_885086.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_885088.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_885089.1 identified by match to protein family HMM PF00067 YP_885090.1 identified by match to protein family HMM PF07398; match to protein family HMM TIGR03083 YP_885092.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738 YP_885093.1 identified by match to protein family HMM PF00941; match to protein family HMM PF03450 YP_885094.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799 YP_885095.1 identified by match to protein family HMM PF07907 YP_885096.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor YP_885098.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754 YP_885099.1 identified by match to protein family HMM PF00196 YP_885104.1 identified by match to protein family HMM PF07332 YP_885109.1 identified by match to protein family HMM PF00296 YP_885110.1 identified by match to protein family HMM TIGR03083; match to protein family HMM TIGR03085 YP_885112.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_885113.1 identified by match to protein family HMM PF03737 YP_885114.1 identified by similarity to GB:CAD18384.1; match to protein family HMM PF03737 YP_885115.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_885116.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_885117.1 identified by match to protein family HMM PF01025 YP_885118.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_885119.1 identified by match to protein family HMM PF00376 YP_885120.1 identified by match to protein family HMM PF00440 YP_885121.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_885122.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_885123.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_885124.1 identified by match to protein family HMM PF00501 YP_885125.1 identified by match to protein family HMM PF01263 YP_885126.1 identified by match to protein family HMM PF00042; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_885130.1 similar at the nucleotide level to IS1137 in the IS Finder database.; identified by match to protein family HMM PF01527 YP_885131.1 similar at the nucleotide level to IS1137 in the IS Finder database.; identified by match to protein family HMM PF00665 YP_885136.1 identified by match to protein family HMM PF00201; match to protein family HMM TIGR01426 YP_885138.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_885139.1 identified by match to protein family HMM PF01113 YP_885140.1 identified by match to protein family HMM PF00355 YP_885141.1 identified by match to protein family HMM PF00440 YP_885143.1 identified by match to protein family HMM PF00106 YP_885145.1 identified by match to protein family HMM PF00588 YP_885146.1 identified by match to protein family HMM PF03663 YP_885148.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_885149.1 identified by match to protein family HMM PF02625 YP_885150.1 identified by match to protein family HMM PF00941; match to protein family HMM PF03450 YP_885151.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799 YP_885152.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738; match to protein family HMM TIGR02416 YP_885153.1 identified by match to protein family HMM PF02625 YP_885154.1 identified by match to protein family HMM PF00004; match to protein family HMM PF07726; match to protein family HMM PF07728 YP_885155.1 identified by match to protein family HMM PF06240 YP_885156.1 identified by match to protein family HMM PF05762 YP_885158.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate YP_885161.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_885163.1 identified by match to protein family HMM PF02163 YP_885165.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_885166.1 identified by match to protein family HMM PF03061 YP_885168.1 identified by match to protein family HMM PF00067 YP_885169.1 identified by match to protein family HMM PF03176 YP_885170.1 identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831 YP_885172.1 identified by match to protein family HMM PF02222 YP_885175.1 identified by match to protein family HMM PF01053; match to protein family HMM TIGR01325 YP_885177.1 identified by match to protein family HMM PF00106 YP_885179.1 identified by match to protein family HMM PF00583 YP_885181.1 identified by match to protein family HMM PF00753 YP_885182.1 identified by match to protein family HMM PF00296 YP_885183.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_885184.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073 YP_885185.1 identified by match to protein family HMM PF01636 YP_885186.1 identified by match to protein family HMM PF00324 YP_885187.1 identified by match to protein family HMM PF00202 YP_885188.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate YP_885189.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_885191.1 identified by match to protein family HMM PF00069 YP_885192.1 identified by match to protein family HMM PF00497 YP_885194.1 identified by match to protein family HMM PF00293 YP_885195.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate YP_885196.1 identified by match to protein family HMM PF01266; match to protein family HMM TIGR02352 YP_885197.1 with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate YP_885198.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_885200.1 identified by match to protein family HMM PF00005 YP_885205.1 identified by similarity to GP:150004; match to protein family HMM PF07929 YP_885206.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_885210.1 identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389 YP_885211.1 identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389 YP_885212.1 identified by match to protein family HMM PF00195; match to protein family HMM PF02797 YP_885213.1 identified by match to protein family HMM PF04140 YP_885214.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494 YP_885215.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_885216.1 identified by match to protein family HMM PF00324; match to protein family HMM PF01490 YP_885218.1 identified by match to protein family HMM PF00440 YP_885220.1 identified by match to protein family HMM PF01266; match to protein family HMM PF07992 YP_885221.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_885222.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_885223.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01879 YP_885224.1 identified by match to protein family HMM PF01425 YP_885226.1 identified by match to protein family HMM PF00067 YP_885229.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine YP_885230.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_885231.1 identified by match to protein family HMM PF07690 YP_885233.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_885234.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_885235.1 identified by match to protein family HMM PF00583 YP_885236.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_885239.1 identified by similarity to PDB:1IB5_A.0; match to protein family HMM PF00080 YP_885240.1 ATP-dependent carboxylate-amine ligase YP_885242.1 identified by match to protein family HMM PF01037 YP_885243.1 identified by match to protein family HMM PF02190 YP_885246.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_885247.1 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_885248.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_885249.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone YP_885250.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_885251.2 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_885254.1 identified by match to protein family HMM PF02040; match to protein family HMM PF03600 YP_885255.1 identified by match to protein family HMM PF00571 YP_885257.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730 YP_885258.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_885259.1 identified by match to protein family HMM PF08044 YP_885261.1 identified by match to protein family HMM PF00440 YP_885262.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02359 YP_885263.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 YP_885264.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_885265.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_885266.1 identified by match to protein family HMM PF00106 YP_885267.1 identified by match to protein family HMM PF03703 YP_885268.1 identified by match to protein family HMM PF03703 YP_885269.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460 YP_885270.1 identified by match to protein family HMM PF04851 YP_885273.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738 YP_885274.1 identified by match to protein family HMM PF00941 YP_885275.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799 YP_885277.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_885278.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_885279.1 identified by match to protein family HMM PF00701 YP_885280.1 identified by match to protein family HMM PF00106 YP_885281.1 identified by match to protein family HMM PF00440 YP_885283.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_885286.1 identified by match to protein family HMM PF07908; match to protein family HMM PF07969 YP_885287.1 identified by match to protein family HMM PF00903 YP_885289.1 identified by match to protein family HMM PF00069 YP_885292.1 identified by match to protein family HMM PF00171 YP_885293.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_885294.1 identified by match to protein family HMM PF03976 YP_885297.1 identified by match to protein family HMM PF01408; match to protein family HMM PF03447 YP_885298.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_885299.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_885301.1 identified by match to protein family HMM PF01116 YP_885302.1 identified by match to protein family HMM PF00326; match to protein family HMM PF02897 YP_885303.1 identified by match to protein family HMM PF00171 YP_885304.1 identified by match to protein family HMM PF05610 YP_885305.1 identified by match to protein family HMM PF02353 YP_885306.1 E3 component of alpha keto acid dehydrogenase complexes LpdC; forms a homodimer; binds one molecule of FAD monomer; catalyzes NAD+-dependent oxidation of dihydrolipoyl cofactors that are covalently linked to the E2 component YP_885308.1 identified by match to protein family HMM PF02627 YP_885309.1 identified by match to protein family HMM PF01381; match to protein family HMM PF06114 YP_885312.1 identified by match to protein family HMM PF01643 YP_885314.1 identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346 YP_885315.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA YP_885316.1 identified by match to protein family HMM PF02353 YP_885318.1 identified by match to protein family HMM PF03976 YP_885319.1 identified by match to protein family HMM PF00440 YP_885320.1 identified by match to protein family HMM PF04286 YP_885321.1 identified by match to protein family HMM PF01381 YP_885325.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_885327.1 identified by match to protein family HMM PF00795 YP_885331.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_885332.1 identified by match to protein family HMM PF03734 YP_885333.1 identified by match to protein family HMM PF00106 YP_885335.1 identified by match to protein family HMM PF00480 YP_885336.1 identified by match to protein family HMM PF00534 YP_885338.1 identified by match to protein family HMM PF00300; match to protein family HMM TIGR01258 YP_885339.1 identified by similarity to SP:P23545; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_885340.1 identified by similarity to SP:Q50447; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_885342.1 identified by match to protein family HMM PF02541 YP_885344.1 identified by match to protein family HMM PF01261 YP_885346.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_885347.1 identified by match to protein family HMM TIGR01764 YP_885348.1 identified by match to protein family HMM PF08213 YP_885349.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_885350.1 identified by match to protein family HMM PF01553 YP_885352.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_885354.1 identified by match to protein family HMM PF05768 YP_885355.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_885356.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_885357.1 identified by match to protein family HMM PF00590; match to protein family HMM PF02602 YP_885358.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_885364.1 identified by match to protein family HMM PF00440 YP_885366.1 identified by match to protein family HMM PF01243 YP_885368.1 identified by match to protein family HMM TIGR00026 YP_885369.1 identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026 YP_885370.1 identified by match to protein family HMM PF00067 YP_885371.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_885372.1 identified by match to protein family HMM PF00300 YP_885374.1 identified by match to protein family HMM PF02683 YP_885375.1 identified by match to protein family HMM PF05140 YP_885376.1 identified by match to protein family HMM PF01578; match to protein family HMM TIGR03144 YP_885380.1 identified by match to protein family HMM PF00266 YP_885382.1 identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730 YP_885383.1 identified by match to protein family HMM PF00072 YP_885384.1 identified by match to protein family HMM TIGR02122 YP_885385.1 identified by match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR02123 YP_885386.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_885387.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_885388.1 identified by match to protein family HMM PF00440 YP_885390.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate YP_885392.1 Catalyzes the reversible phosphorolysis of 5'-deoxy-5'- methylthioadenosine (MTA) to adenine and 5-methylthio-D-ribose-1- phosphate YP_885393.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_885394.1 identified by match to protein family HMM PF03060 YP_885395.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_885396.1 identified by similarity to SP:P35163; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_885397.1 identified by match to protein family HMM PF00535 YP_885400.1 identified by match to protein family HMM PF00174 YP_885403.1 identified by match to protein family HMM PF00583 YP_885404.1 identified by similarity to GP:150004; match to protein family HMM PF07929 YP_885405.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_885406.1 identified by match to protein family HMM PF01170 YP_885407.1 identified by match to protein family HMM PF01636 YP_885408.1 identified by match to protein family HMM PF01925 YP_885410.1 identified by match to protein family HMM PF00067 YP_885411.1 identified by match to protein family HMM PF00440 YP_885412.1 identified by match to protein family HMM PF00106 YP_885413.1 identified by match to protein family HMM PF00245 YP_885415.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_885416.1 identified by match to protein family HMM PF00440 YP_885417.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_885418.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02194 YP_885419.1 Catalyzes the rate-limiting step in dNTP synthesis YP_885420.1 identified by match to protein family HMM PF00903 YP_885422.1 identified by match to protein family HMM PF07690 YP_885424.1 identified by match to protein family HMM PF00583 YP_885425.1 identified by match to protein family HMM PF00440 YP_885426.1 identified by match to protein family HMM PF00296 YP_885427.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR02032 YP_885428.1 identified by match to protein family HMM PF00440 YP_885432.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_885433.1 identified by match to protein family HMM PF00756 YP_885435.1 identified by match to protein family HMM PF00107 YP_885436.1 identified by match to protein family HMM PF03795 YP_885437.1 identified by match to protein family HMM PF01497 YP_885438.1 identified by match to protein family HMM PF00702; match to protein family HMM PF01842; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488 YP_885440.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_885442.1 identified by match to protein family HMM PF02588 YP_885443.1 identified by match to protein family HMM PF00005 YP_885444.1 identified by match to protein family HMM PF00293 YP_885445.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_885449.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_885452.1 identified by match to protein family HMM PF00132 YP_885453.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate YP_885454.1 identified by similarity to GP:150004; match to protein family HMM PF07929 YP_885455.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_885457.1 identified by match to protein family HMM PF01243 YP_885458.1 identified by match to protein family HMM PF00501 YP_885460.1 identified by match to protein family HMM PF01384 YP_885463.1 identified by match to protein family HMM PF00903 YP_885464.1 identified by match to protein family HMM PF07905 YP_885465.1 identified by match to protein family HMM PF00324 YP_885466.1 identified by match to protein family HMM PF00106 YP_885467.1 identified by match to protein family HMM PF00106 YP_885468.1 identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230 YP_885469.1 identified by match to protein family HMM PF01522 YP_885470.1 identified by match to protein family HMM PF00106 YP_885471.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA YP_885473.1 identified by match to protein family HMM TIGR00026 YP_885474.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_885478.1 identified by match to protein family HMM PF00196 YP_885480.1 identified by match to protein family HMM PF00496 YP_885481.1 identified by match to protein family HMM PF00528 YP_885482.1 identified by match to protein family HMM PF00528 YP_885483.1 identified by match to protein family HMM PF01425 YP_885485.1 identified by match to protein family HMM PF01425 YP_885486.1 involved in the assembly of the urease metallocenter; nickel donor YP_885487.1 identified by match to protein family HMM PF01730 YP_885488.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_885489.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_885490.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00101 YP_885492.1 identified by match to protein family HMM PF00535 YP_885493.1 activates fatty acids by binding to coenzyme A YP_885495.1 identified by match to protein family HMM PF04946 YP_885497.1 identified by match to protein family HMM PF07969 YP_885498.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate YP_885500.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_885501.1 identified by match to protein family HMM PF01965 YP_885502.1 identified by match to protein family HMM PF00561 YP_885503.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis YP_885506.1 identified by match to protein family HMM PF00534 YP_885507.1 Catalyzes the conversion of citrate to isocitrate YP_885508.1 identified by match to protein family HMM PF00106 YP_885509.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone YP_885510.1 identified by match to protein family HMM PF00120 YP_885511.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_885512.1 identified by match to protein family HMM PF00324 YP_885513.1 identified by match to protein family HMM PF00117; match to protein family HMM PF07722 YP_885514.1 identified by match to protein family HMM PF00795 YP_885517.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683 YP_885518.1 identified by match to protein family HMM PF00037 YP_885519.1 identified by match to protein family HMM PF01726 YP_885523.1 identified by match to protein family HMM PF01266 YP_885525.1 identified by match to protein family HMM PF03073 YP_885526.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF04820; match to protein family HMM PF05834; match to protein family HMM PF07992; match to protein family HMM TIGR02032 YP_885527.1 identified by match to protein family HMM PF00348 YP_885528.1 metalloprotease YP_885531.1 identified by match to protein family HMM PF00324 YP_885532.1 identified by match to protein family HMM PF00107 YP_885533.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_885534.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_885535.1 identified by match to protein family HMM PF02405 YP_885536.1 identified by match to protein family HMM PF02405 YP_885537.1 identified by match to protein family HMM PF02470 YP_885538.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_885539.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_885540.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_885541.1 identified by match to protein family HMM PF02470 YP_885542.1 identified by match to protein family HMM PF02470 YP_885545.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_885546.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_885547.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01266 YP_885548.1 identified by match to protein family HMM PF02515 YP_885549.1 identified by match to protein family HMM PF00378 YP_885550.1 identified by match to protein family HMM PF00701 YP_885551.1 identified by match to protein family HMM PF00106 YP_885552.1 identified by match to protein family HMM PF00171 YP_885554.1 identified by match to protein family HMM PF00005 YP_885555.1 identified by match to protein family HMM PF00528 YP_885558.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_885559.1 identified by match to protein family HMM PF00067 YP_885561.1 identified by match to protein family HMM PF07690 YP_885563.1 identified by match to protein family HMM PF01451 YP_885564.1 identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832 YP_885565.1 identified by match to protein family HMM PF01022 YP_885566.1 identified by match to protein family HMM PF00903 YP_885567.1 identified by match to protein family HMM PF01022 YP_885569.1 identified by match to protein family HMM PF02133 YP_885570.1 identified by match to protein family HMM PF01418 YP_885571.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_885572.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_885573.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate YP_885574.1 catalyzes the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_885575.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_885576.1 identified by match to protein family HMM PF01083 YP_885577.1 identified by match to protein family HMM PF01037 YP_885578.1 identified by match to protein family HMM PF03553; match to protein family HMM PF03600 YP_885579.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07908; match to protein family HMM PF07969 YP_885582.1 identified by match to protein family HMM PF00069 YP_885584.1 identified by match to protein family HMM PF01551 YP_885585.1 identified by match to protein family HMM PF05731 YP_885588.1 identified by match to protein family HMM PF00176 YP_885589.1 identified by match to protein family HMM PF00196 YP_885591.1 identified by match to protein family HMM PF03706; match to protein family HMM TIGR00374 YP_885592.1 identified by match to protein family HMM PF00069; match to protein family HMM PF00497 YP_885595.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_885596.1 identified by match to protein family HMM PF02353 YP_885597.1 identified by match to protein family HMM PF02353 YP_885599.1 identified by match to protein family HMM PF00534 YP_885601.1 identified by match to protein family HMM PF04041 YP_885602.1 identified by match to protein family HMM PF01936 YP_885603.1 identified by match to protein family HMM PF00487 YP_885605.1 identified by match to protein family HMM PF00067 YP_885606.1 identified by match to protein family HMM PF07995 YP_885608.1 identified by match to protein family HMM PF01094 YP_885609.1 identified by match to protein family HMM PF00005 YP_885610.1 identified by match to protein family HMM PF00005 YP_885611.1 identified by match to protein family HMM PF02653 YP_885612.1 identified by match to protein family HMM PF02653 YP_885614.1 identified by similarity to GP:2935133; match to protein family HMM PF01609 YP_885618.1 identified by match to protein family HMM PF03781 YP_885619.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_885620.1 identified by match to protein family HMM PF00884 YP_885621.1 negatively supercoils closed circular double-stranded DNA YP_885623.1 identified by match to protein family HMM PF02656 YP_885625.1 identified by match to protein family HMM PF00005 YP_885626.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740 YP_885629.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851 YP_885630.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_885633.1 identified by match to protein family HMM PF00266 YP_885636.1 identified by match to protein family HMM PF01507 YP_885640.1 identified by similarity to GP:12484144; match to protein family HMM PF00665 YP_885641.1 identified by similarity to GP:6572439; match to protein family HMM PF01527 YP_885642.1 identified by match to protein family HMM PF05305 YP_885645.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_885646.1 identified by match to protein family HMM PF00580 YP_885648.1 identified by similarity to GP:150004; match to protein family HMM PF07929 YP_885649.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_885655.1 identified by match to protein family HMM PF07553 YP_885658.1 identified by match to protein family HMM PF00293 YP_885659.1 identified by match to protein family HMM PF00149 YP_885662.1 identified by match to protein family HMM PF00782; match to protein family HMM PF03747 YP_885663.1 identified by match to protein family HMM PF05305 YP_885664.1 identified by match to protein family HMM PF03758 YP_885668.1 identified by match to protein family HMM PF05012; match to protein family HMM TIGR01550 YP_885673.1 identified by match to protein family HMM PF07704 YP_885674.1 identified by match to protein family HMM PF01850 YP_885675.1 identified by match to protein family HMM PF02810; match to protein family HMM PF07721 YP_885676.1 identified by match to protein family HMM PF00884 YP_885677.1 similar to Streptomyces cyclase/dehydrase; identified by match to protein family HMM PF03364 YP_885680.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_885681.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738 YP_885682.1 identified by match to protein family HMM PF00941 YP_885683.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_885685.1 identified by match to protein family HMM PF00576 YP_885686.1 identified by match to protein family HMM PF01014 YP_885687.1 catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway. YP_885688.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_885689.1 identified by match to protein family HMM PF03171 YP_885691.1 identified by match to protein family HMM PF00196 YP_885693.1 identified by match to protein family HMM PF01381 YP_885694.1 identified by match to protein family HMM PF00248 YP_885695.1 identified by match to protein family HMM PF00440 YP_885696.1 identified by match to protein family HMM PF00171 YP_885697.1 identified by match to protein family HMM PF07110; match to protein family HMM TIGR02118 YP_885698.1 identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976 YP_885700.1 identified by match to protein family HMM PF01609 YP_885701.1 identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728; match to protein family HMM TIGR00733 YP_885704.1 identified by match to protein family HMM PF00924 YP_885706.1 identified by match to protein family HMM PF00009; match to protein family HMM TIGR00231; match to protein family HMM TIGR00503 YP_885707.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_885708.1 identified by match to protein family HMM PF01522 YP_885709.1 identified by match to protein family HMM PF01177 YP_885710.1 identified by match to protein family HMM PF07690 YP_885711.1 identified by match to protein family HMM PF01557 YP_885712.1 identified by match to protein family HMM PF03734 YP_885716.1 identified by match to protein family HMM TIGR01447 YP_885717.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR00609 YP_885718.1 identified by match to protein family HMM PF04257; match to protein family HMM TIGR01450 YP_885719.1 identified by match to protein family HMM PF05977; match to protein family HMM PF07690 YP_885720.1 identified by match to protein family HMM PF01047 YP_885721.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_885724.1 identified by match to protein family HMM PF00753 YP_885725.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_885726.1 identified by similarity to SP:P39662; match to protein family HMM PF00042; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_885727.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif YP_885728.1 functions as a heterodimer along with HadB in fatty acid biosynthesis; fatty acid synthase type II; FAS-II YP_885729.1 functions as a heterodimer along with HadA or HadC in fatty acid biosynthesis; fatty acid synthase type II; FAS-II YP_885730.1 functions as a heterodimer along with HadB in fatty acid biosynthesis; fatty acid synthase type II; FAS-II YP_885731.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_885732.1 Modulates Rho-dependent transcription termination YP_885733.1 binds directly to 23S ribosomal RNA YP_885734.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_885735.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_885736.1 identified by match to protein family HMM PF04946 YP_885737.1 identified by match to protein family HMM PF02353 YP_885738.1 identified by match to protein family HMM PF02353 YP_885739.1 identified by match to protein family HMM PF00561 YP_885740.1 identified by match to protein family HMM PF03109 YP_885741.1 identified by match to protein family HMM PF00440 YP_885742.1 identified by match to protein family HMM PF04978 YP_885744.1 identified by match to protein family HMM PF02082; match to protein family HMM PF08220 YP_885746.1 identified by match to protein family HMM PF03372 YP_885747.1 identified by match to protein family HMM PF01074; match to protein family HMM PF07748 YP_885749.1 identified by match to protein family HMM PF00480 YP_885750.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_885751.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_885752.1 identified by match to protein family HMM PF00005 YP_885753.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; subunit beta is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_885754.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_885755.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_885756.1 identified by match to protein family HMM PF00107 YP_885758.1 identified by match to protein family HMM PF00005 YP_885759.1 identified by match to protein family HMM PF02653 YP_885760.1 identified by match to protein family HMM PF00532 YP_885761.1 identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167 YP_885762.1 identified by match to protein family HMM PF00370 YP_885763.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220 YP_885764.1 identified by match to protein family HMM PF00294 YP_885765.1 identified by similarity to SP:P37339; match to protein family HMM PF01266 YP_885766.1 identified by match to protein family HMM PF00440 YP_885767.1 identified by match to protein family HMM PF05423 YP_885768.1 identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833 YP_885769.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues YP_885770.1 identified by match to protein family HMM PF01569 YP_885771.1 identified by match to protein family HMM PF05899 YP_885773.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_885774.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_885775.1 identified by match to protein family HMM PF07848; match to protein family HMM PF08223 YP_885776.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_885777.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_885778.1 identified by match to protein family HMM PF00465 YP_885783.1 identified by match to protein family HMM PF00440 YP_885784.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_885785.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_885786.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_885788.1 identified by match to protein family HMM PF01083 YP_885789.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_885790.1 identified by similarity to GP:150004; match to protein family HMM PF07929 YP_885792.1 catalyzes the degradation of arginine to citruline and ammonia YP_885793.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_885794.1 identified by match to protein family HMM PF00582 YP_885795.1 identified by match to protein family HMM PF00324; match to protein family HMM PF01490 YP_885796.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR01885 YP_885797.1 identified by match to protein family HMM PF02274 YP_885798.1 identified by match to protein family HMM PF01037 YP_885799.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_885800.1 identified by match to protein family HMM PF00903 YP_885801.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_885803.1 identified by match to protein family HMM PF00440 YP_885806.1 identified by match to protein family HMM PF04055 YP_885807.1 identified by match to protein family HMM PF01070 YP_885808.1 identified by match to protein family HMM PF02633 YP_885809.1 identified by match to protein family HMM PF00535 YP_885810.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_885811.1 identified by match to protein family HMM PF07690 YP_885812.1 identified by match to protein family HMM PF00440 YP_885813.1 identified by match to protein family HMM PF00067 YP_885814.1 identified by match to protein family HMM PF00067 YP_885815.1 identified by match to protein family HMM PF00135 YP_885818.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_885819.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_885820.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_885821.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_885822.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_885823.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_885824.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_885825.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_885826.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_885827.1 one of the stabilizing components for the large ribosomal subunit YP_885828.1 identified by match to protein family HMM PF00366 YP_885829.1 identified by match to protein family HMM PF00293 YP_885830.1 identified by match to protein family HMM PF00376 YP_885831.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740 YP_885833.1 identified by match to protein family HMM PF00884 YP_885834.1 identified by match to protein family HMM PF03781 YP_885835.1 identified by match to protein family HMM PF03600 YP_885837.1 identified by match to protein family HMM PF07690 YP_885839.1 identified by match to protein family HMM PF03928 YP_885840.1 identified by match to protein family HMM PF03070 YP_885841.1 identified by match to protein family HMM PF00355 YP_885842.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_885843.1 identified by match to protein family HMM PF00171 YP_885844.1 identified by match to protein family HMM PF00355 YP_885845.1 identified by match to protein family HMM PF01019 YP_885846.1 identified by match to protein family HMM PF01042 YP_885847.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_885848.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_885849.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_885850.1 identified by match to protein family HMM PF00253 YP_885851.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_885852.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_885853.1 binds 5S rRNA along with protein L5 and L25 YP_885854.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_885855.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_885856.1 late assembly protein YP_885857.1 identified by match to protein family HMM PF00296 YP_885858.1 identified by match to protein family HMM PF01343; match to protein family HMM TIGR00705; match to protein family HMM TIGR00706 YP_885859.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_885860.1 identified by match to protein family HMM PF01810 YP_885861.1 identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027 YP_885862.1 identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027 YP_885863.1 identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027 YP_885864.1 identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027 YP_885865.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_885866.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_885867.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn YP_885868.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in M. tuberculosis this protein regulates polyketide synthases and secreted or membrane proteins YP_885870.1 identified by match to protein family HMM PF02775; match to protein family HMM PF02776 YP_885873.1 identified by match to protein family HMM PF00155 YP_885874.1 identified by match to protein family HMM PF01047 YP_885875.1 identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730 YP_885876.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_885877.1 identified by match to protein family HMM PF00702 YP_885878.1 identified by match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR01692 YP_885879.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_885880.1 identified by similarity to GB:AAA99190.1; match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_885881.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494 YP_885882.1 identified by match to protein family HMM PF00440; match to protein family HMM PF02796 YP_885883.1 identified by match to protein family HMM TIGR00027 YP_885884.1 identified by match to protein family HMM PF00005 YP_885887.1 identified by match to protein family HMM PF00892 YP_885888.1 identified by match to protein family HMM PF00440 YP_885889.1 identified by match to protein family HMM PF03576 YP_885890.1 identified by match to protein family HMM PF00324 YP_885891.1 identified by match to protein family HMM PF00440 YP_885892.1 identified by match to protein family HMM PF00881 YP_885893.1 identified by match to protein family HMM PF00908 YP_885894.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181 YP_885897.1 identified by match to protein family HMM PF00027; match to protein family HMM PF02518 YP_885898.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00072; match to protein family HMM PF01266; match to protein family HMM PF07992 YP_885899.1 identified by match to protein family HMM PF01145 YP_885901.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_885902.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_885903.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_885904.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_885905.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_885906.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_885907.1 identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059 YP_885908.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_885909.1 identified by match to protein family HMM PF01083 YP_885910.1 identified by match to protein family HMM PF01083 YP_885911.1 identified by match to protein family HMM PF01083 YP_885912.1 identified by match to protein family HMM PF00892 YP_885913.1 identified by match to protein family HMM PF07336 YP_885914.1 identified by match to protein family HMM PF03992 YP_885915.1 identified by match to protein family HMM PF05108 YP_885916.1 identified by match to protein family HMM PF00082 YP_885918.1 identified by match to protein family HMM PF01580 YP_885922.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_885924.1 identified by match to protein family HMM PF00486; match to protein family HMM PF01590 YP_885925.1 identified by match to protein family HMM PF00171 YP_885926.1 identified by match to protein family HMM PF03928 YP_885928.1 identified by match to protein family HMM PF02287 YP_885929.1 identified by match to protein family HMM PF02286 YP_885930.1 identified by match to protein family HMM PF02288 YP_885933.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR00908 YP_885934.1 identified by match to protein family HMM PF06751 YP_885935.1 catalyzes the formation of acetaldehyde from ethanolamine YP_885936.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_885937.1 forms a direct contact with the tRNA during translation YP_885939.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_885941.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_885943.1 identified by match to protein family HMM PF03055 YP_885944.1 identified by match to protein family HMM PF00440 YP_885945.1 identified by match to protein family HMM PF00296 YP_885947.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_885948.1 identified by match to protein family HMM PF00561 YP_885950.1 identified by match to protein family HMM PF00892 YP_885951.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_885952.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197 YP_885953.1 identified by match to protein family HMM PF00282; match to protein family HMM TIGR01788 YP_885954.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_885955.1 identified by match to protein family HMM PF00561 YP_885956.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_885957.1 identified by match to protein family HMM PF00814 YP_885958.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_885959.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_885961.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_885962.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth YP_885964.1 identified by match to protein family HMM PF07883 YP_885965.1 identified by match to protein family HMM PF00144 YP_885970.1 identified by match to protein family HMM PF01609 YP_885972.1 identified by match to protein family HMM PF00378 YP_885974.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_885975.1 identified by match to protein family HMM PF00440 YP_885976.1 identified by match to protein family HMM PF02467 YP_885978.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this protein is involved in expression of ribosome-associated gene products in stationary phase YP_885981.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_885982.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_885983.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01266 YP_885984.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_885985.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_885987.1 identified by match to protein family HMM PF03632; match to protein family HMM PF03633; match to protein family HMM PF03636 YP_885988.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_885989.1 identified by match to protein family HMM PF00440 YP_885990.1 identified by match to protein family HMM PF00497 YP_885991.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_885992.1 identified by match to protein family HMM PF00005 YP_885993.1 identified by match to protein family HMM PF01019 YP_885999.1 identified by match to protein family HMM PF01156 YP_886000.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_886002.1 identified by match to protein family HMM PF00324 YP_886004.1 identified by match to protein family HMM PF00106 YP_886007.1 identified by match to protein family HMM PF00106 YP_886009.1 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase. YP_886012.1 identified by match to protein family HMM PF00881 YP_886013.1 identified by match to protein family HMM PF00588 YP_886014.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518 YP_886015.1 identified by match to protein family HMM PF03259 YP_886016.1 identified by match to protein family HMM PF05331 YP_886017.1 identified by match to protein family HMM PF03029 YP_886018.1 identified by match to protein family HMM PF00805 YP_886019.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00498; match to protein family HMM PF01061 YP_886022.1 identified by match to protein family HMM PF00724 YP_886023.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_886024.1 identified by match to protein family HMM PF00398 YP_886025.1 identified by match to protein family HMM PF00440 YP_886026.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494 YP_886028.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine YP_886029.1 catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol YP_886031.1 identified by match to protein family HMM PF03971; match to protein family HMM TIGR00178 YP_886032.1 identified by match to protein family HMM PF00561 YP_886033.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_886034.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_886035.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00766 YP_886036.1 identified by match to protein family HMM PF00893 YP_886037.1 identified by match to protein family HMM PF03060 YP_886038.1 identified by match to protein family HMM PF00768 YP_886039.1 identified by match to protein family HMM PF00202 YP_886040.1 identified by match to protein family HMM PF01037 YP_886042.1 catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation YP_886043.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_886044.1 identified by match to protein family HMM PF01243 YP_886045.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_886046.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_886048.1 identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970 YP_886049.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis YP_886051.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate YP_886052.1 catalyzes the formation of inosine from adenosine YP_886053.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_886054.1 identified by match to protein family HMM PF00206 YP_886055.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891 YP_886056.1 identified by match to protein family HMM PF06267 YP_886057.1 identified by match to protein family HMM PF01042 YP_886059.1 identified by match to protein family HMM PF02133 YP_886062.1 identified by match to protein family HMM PF00877 YP_886064.1 identified by match to protein family HMM PF07883 YP_886065.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_886066.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_886067.1 identified by match to protein family HMM PF00196 YP_886068.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; match to protein family HMM TIGR02957 YP_886069.1 identified by match to protein family HMM PF00890; match to protein family HMM PF02910 YP_886070.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_886071.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_886072.1 identified by match to protein family HMM PF01047 YP_886073.1 identified by match to protein family HMM PF05145; match to protein family HMM TIGR03082 YP_886075.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494 YP_886076.1 identified by match to protein family HMM PF00440 YP_886077.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation YP_886078.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_886079.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891 YP_886081.1 identified by match to protein family HMM PF00005 YP_886082.1 identified by match to protein family HMM PF02653 YP_886083.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_886084.1 identified by similarity to SP:P03023; match to protein family HMM PF00356; match to protein family HMM PF00532 YP_886085.1 identified by match to protein family HMM PF02653 YP_886086.1 identified by match to protein family HMM PF02653 YP_886087.1 identified by match to protein family HMM PF00005 YP_886088.1 identified by match to protein family HMM PF00532 YP_886089.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate YP_886090.1 catalyzes the formation of D-xylulose 5-phosphate from L-ribulose 5-phosphate YP_886091.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism YP_886092.1 identified by similarity to GP:15619022; match to protein family HMM PF01527 YP_886093.1 identified by similarity to SP:P37248; match to protein family HMM PF00665 YP_886094.1 similar at the nucleotide level to IS1137 in the IS Finder database.; identified by match to protein family HMM PF01527 YP_886095.1 similar at the nucleotide level to IS1137 in the IS Finder database.; identified by match to protein family HMM PF00665 YP_886100.1 identified by match to protein family HMM PF00665 YP_886101.1 identified by similarity to GP:16551202; match to protein family HMM PF01527 YP_886102.1 identified by similarity to GP:16551202; match to protein family HMM PF00665 YP_886103.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_886104.1 identified by similarity to SP:P35883; match to protein family HMM PF00872 YP_886107.1 catalyzes the reduction of nonspecific electron acceptors such as 2,6-dimethyl-1,4-benzoquinone and 5-hydroxy-1,4-naphthaquinone; does not have lipoamide dehydrogenase activity YP_886108.1 identified by match to protein family HMM PF01266 YP_886109.1 identified by match to protein family HMM PF00849 YP_886111.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_886112.1 identified by match to protein family HMM PF00378 YP_886113.1 identified by match to protein family HMM PF00440 YP_886114.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_886115.1 identified by match to protein family HMM PF00487 YP_886117.1 identified by match to protein family HMM PF00440 YP_886118.1 identified by match to protein family HMM PF01565 YP_886119.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_886120.1 identified by match to protein family HMM PF06172 YP_886123.1 identified by match to protein family HMM PF00248 YP_886125.1 identified by match to protein family HMM PF01048; match to protein family HMM TIGR01704 YP_886128.1 identified by match to protein family HMM PF01149; match to protein family HMM PF06827; match to protein family HMM PF06831 YP_886129.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_886132.1 identified by match to protein family HMM PF06762 YP_886133.1 identified by match to protein family HMM PF00106 YP_886134.1 identified by match to protein family HMM PF00171 YP_886135.1 identified by match to protein family HMM PF01037 YP_886136.1 catalyzes the formation of 2-aminoadipate 6-semiladehyde and glutamate from lysine and 2-oxoglutarate YP_886137.1 identified by match to protein family HMM PF04471 YP_886142.1 identified by match to protein family HMM PF05532 YP_886143.1 identified by match to protein family HMM PF01170; match to protein family HMM PF05175; match to protein family HMM TIGR00537 YP_886148.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_886154.1 identified by match to protein family HMM PF00106 YP_886159.1 identified by match to protein family HMM PF01740 YP_886165.1 identified by match to protein family HMM PF00296 YP_886167.1 identified by match to protein family HMM PF00107 YP_886168.1 identified by match to protein family HMM PF01266 YP_886169.1 identified by match to protein family HMM PF00561 YP_886170.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_886171.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_886174.1 identified by match to protein family HMM PF06150 YP_886176.1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock YP_886179.1 identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786 YP_886180.1 identified by match to protein family HMM PF02657 YP_886181.1 identified by match to protein family HMM PF00581 YP_886183.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_886185.1 identified by match to protein family HMM PF01039 YP_886188.1 identified by match to protein family HMM PF03703 YP_886189.1 identified by match to protein family HMM PF04138 YP_886190.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_886191.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_886192.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_886193.1 identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121 YP_886194.1 identified by match to protein family HMM TIGR03089 YP_886195.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_886196.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214 YP_886197.1 identified by match to protein family HMM PF00535 YP_886198.1 identified by match to protein family HMM PF00293 YP_886199.1 catalyzes the addition of gamma linked glutamate to 7,8-didemethyl-8-hydroxy-5-deazariboflavin coenzyme F420-0) YP_886200.1 catalyzes the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP from actyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) YP_886201.1 identified by match to protein family HMM PF02467 YP_886204.1 converts mannose-6-phosphate to mannose-1-phosphate; the resulting product is then converted to GDP-mannose by ManC which is then used in the synthesis of mannose-containing glycoconjugates that are important for mediating entry into host cells YP_886206.1 identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218 YP_886208.1 identified by match to protein family HMM PF00324 YP_886209.1 identified by match to protein family HMM PF00487 YP_886210.1 identified by match to protein family HMM PF00301 YP_886211.1 identified by match to protein family HMM PF00301 YP_886212.1 identified by match to protein family HMM PF00440 YP_886214.1 identified by match to protein family HMM PF03458 YP_886215.1 identified by match to protein family HMM PF03916 YP_886216.1 identified by match to protein family HMM PF00037 YP_886217.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00475 YP_886218.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis YP_886219.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00476 YP_886220.1 identified by match to protein family HMM PF00004 YP_886221.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_886223.1 identified by match to protein family HMM PF00665 YP_886224.1 identified by match to protein family HMM PF01695 YP_886228.1 identified by match to protein family HMM PF00665 YP_886231.1 identified by similarity to GP:2935133; match to protein family HMM PF01609 YP_886232.1 identified by match to protein family HMM PF00665 YP_886233.1 identified by match to protein family HMM PF01527 YP_886238.1 identified by match to protein family HMM PF06013 YP_886239.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_886240.1 identified by similarity to SP:Q50447; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_886241.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_886244.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_886246.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_886248.1 identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946 YP_886249.1 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842 YP_886251.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_886252.1 identified by match to protein family HMM PF00487 YP_886254.1 identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027 YP_886255.1 identified by match to protein family HMM PF03193 YP_886256.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_886257.1 identified by match to protein family HMM PF02586 YP_886258.1 identified by match to protein family HMM PF05175 YP_886260.1 identified by match to protein family HMM PF00106 YP_886261.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_886262.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_886263.1 identified by match to protein family HMM PF00561; match to protein family HMM TIGR02427 YP_886264.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429 YP_886265.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428 YP_886266.1 identified by match to protein family HMM PF02557 YP_886267.1 identified by match to protein family HMM PF00196; match to protein family HMM PF07721 YP_886268.1 identified by match to protein family HMM PF00126 YP_886269.1 identified by match to protein family HMM PF02515 YP_886270.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_886271.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02771 YP_886272.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF07729; match to protein family HMM PF08021 YP_886273.1 identified by match to protein family HMM PF00866 YP_886274.1 identified by match to protein family HMM PF00355; match to protein family HMM PF00848 YP_886275.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_886276.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_886277.1 identified by match to protein family HMM PF00775; match to protein family HMM PF04444; match to protein family HMM TIGR02438 YP_886278.1 identified by match to protein family HMM PF02426 YP_886279.1 identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011 YP_886280.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; match to protein family HMM TIGR02947 YP_886281.1 identified by match to protein family HMM TIGR02949 YP_886283.1 identified by match to protein family HMM PF00364 YP_886284.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07568 YP_886285.1 identified by match to protein family HMM PF02467 YP_886286.1 identified by match to protein family HMM PF00781 YP_886287.1 identified by match to protein family HMM PF02810 YP_886288.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_886290.1 identified by match to protein family HMM PF00583 YP_886291.1 identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543 YP_886292.1 forms a homodimer in Mycobacterium tuberculosis; belongs to the dPGM superfamily YP_886293.1 identified by match to protein family HMM PF01656 YP_886294.1 identified by match to protein family HMM PF00481 YP_886296.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_886301.1 identified by match to protein family HMM PF00440 YP_886303.1 The proteins in this cluster have high sequence similarity to MoeB and are possibly involved in the synthesis of molybdopterin, but there has been no biochemical or physiological characterization. There is also no genetic linkage to other molybdopterin cofactor synthesis proteins. These proteins are similar to a Pseudomonas stutzeri protein which is essential to pyridine-2,6-bis(thiocarboxylic acid) synthesis that possibly activates a substrate by adenylation YP_886304.1 identified by match to protein family HMM TIGR02569 YP_886305.1 identified by match to protein family HMM PF01035 YP_886306.1 identified by match to protein family HMM PF00561 YP_886307.1 identified by match to protein family HMM PF00580 YP_886308.1 identified by match to protein family HMM PF00580 YP_886309.1 identified by match to protein family HMM PF01988 YP_886311.1 identified by match to protein family HMM PF02254; match to protein family HMM PF07885 YP_886312.1 can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates YP_886313.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02200 YP_886316.1 identified by match to protein family HMM PF05532 YP_886318.1 identified by match to protein family HMM PF00570; match to protein family HMM PF00580 YP_886319.1 identified by match to protein family HMM PF02467 YP_886320.1 identified by match to protein family HMM PF03109 YP_886325.1 identified by match to protein family HMM PF03699 YP_886329.1 identified by match to protein family HMM PF00486; match to protein family HMM PF03704 YP_886330.1 identified by match to protein family HMM PF01565 YP_886332.1 identified by match to protein family HMM PF00440 YP_886333.1 identified by match to protein family HMM PF00106 YP_886334.1 identified by match to protein family HMM PF00376 YP_886335.1 identified by match to protein family HMM PF01590; match to protein family HMM PF02954 YP_886336.1 identified by match to protein family HMM PF02332 YP_886337.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_886339.1 identified by match to protein family HMM PF04909 YP_886340.1 identified by match to protein family HMM PF01883 YP_886341.1 identified by match to protein family HMM PF00107 YP_886342.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; the rhizobia and high GC gram-positive bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the R. leguminosarum protein in this cluster is transcribed under anaerobic conditions and is not necessary for growth YP_886343.1 identified by match to protein family HMM PF03992 YP_886344.1 identified by match to protein family HMM PF01494 YP_886345.1 identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026 YP_886346.1 identified by match to protein family HMM PF00501 YP_886347.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_886348.1 identified by match to protein family HMM PF00561 YP_886349.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_886350.1 identified by similarity to SP:Q51945; match to protein family HMM PF00180; match to protein family HMM TIGR02089 YP_886353.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_886355.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_886356.1 identified by match to protein family HMM PF02515 YP_886357.1 identified by match to protein family HMM PF01575 YP_886359.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_886360.1 identified by match to protein family HMM PF00296 YP_886362.1 identified by match to protein family HMM PF00561 YP_886365.1 identified by match to protein family HMM PF00083 YP_886366.1 identified by similarity to GP:150004; match to protein family HMM PF07929 YP_886367.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_886369.1 identified by match to protein family HMM PF01261 YP_886370.1 identified by match to protein family HMM PF00903 YP_886371.1 identified by match to protein family HMM PF01557 YP_886373.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_886374.1 identified by match to protein family HMM PF07876 YP_886375.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_886376.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_886377.1 identified by match to protein family HMM PF00106 YP_886378.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459 YP_886379.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01581; match to protein family HMM TIGR02141 YP_886380.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256 YP_886381.1 identified by match to protein family HMM PF00376; match to protein family HMM PF03459; match to protein family HMM TIGR01764 YP_886382.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_886383.1 identified by match to protein family HMM PF01757 YP_886384.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM PF06808 YP_886385.1 identified by match to protein family HMM PF02515 YP_886386.1 identified by match to protein family HMM PF00682 YP_886387.1 identified by match to protein family HMM PF01614 YP_886388.1 identified by match to protein family HMM PF00106 YP_886389.1 identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026 YP_886390.1 identified by match to protein family HMM PF07690 YP_886391.1 identified by match to protein family HMM PF00106 YP_886392.1 identified by match to protein family HMM PF00440 YP_886394.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_886395.1 identified by match to protein family HMM PF00107 YP_886396.1 identified by match to protein family HMM PF00107 YP_886397.1 identified by match to protein family HMM PF00561 YP_886398.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01593 YP_886399.1 identified by match to protein family HMM PF00296 YP_886400.1 identified by match to protein family HMM PF01266 YP_886401.1 identified by match to protein family HMM PF00165 YP_886403.1 identified by match to protein family HMM PF01636 YP_886404.1 identified by match to protein family HMM PF00440 YP_886405.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_886406.1 identified by match to protein family HMM PF00296 YP_886407.1 identified by match to protein family HMM PF02585 YP_886408.1 identified by match to protein family HMM PF00107 YP_886409.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_886410.1 identified by match to protein family HMM PF00440 YP_886411.1 Catalyzes the transfer of electrons from NADH to quinone YP_886412.1 Catalyzes the transfer of electrons from NADH to quinone YP_886413.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_886414.1 Catalyzes the transfer of electrons from NADH to quinone YP_886415.1 Catalyzes the transfer of electrons from NADH to quinone YP_886416.1 Catalyzes the transfer of electrons from NADH to quinone YP_886417.1 Catalyzes the transfer of electrons from NADH to quinone YP_886418.1 Catalyzes the transfer of electrons from NADH to quinone YP_886419.1 identified by similarity to SP:P31979; match to protein family HMM PF01512; match to protein family HMM TIGR01959 YP_886420.1 Catalyzes the transfer of electrons from NADH to quinone YP_886421.1 Catalyzes the transfer of electrons from NADH to quinone YP_886422.1 Catalyzes the transfer of electrons from NADH to quinone YP_886423.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_886424.1 Catalyzes the transfer of electrons from NADH to quinone YP_886426.1 identified by match to protein family HMM PF04264 YP_886428.1 identified by match to protein family HMM PF05724 YP_886430.1 identified by match to protein family HMM PF01636 YP_886431.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_886432.1 identified by match to protein family HMM PF00440 YP_886433.1 identified by match to protein family HMM PF00682 YP_886434.1 identified by match to protein family HMM PF02515 YP_886436.1 identified by match to protein family HMM PF04209 YP_886437.1 identified by match to protein family HMM PF04229 YP_886438.1 identified by match to protein family HMM PF08028 YP_886439.1 identified by match to protein family HMM PF00756 YP_886440.1 identified by match to protein family HMM PF00107; match to protein family HMM TIGR02823 YP_886441.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_886442.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_886444.1 identified by match to protein family HMM PF00459; match to protein family HMM TIGR02067 YP_886446.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1 YP_886447.1 identified by match to protein family HMM PF00924 YP_886449.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00960; match to protein family HMM TIGR02673 YP_886450.1 identified by match to protein family HMM PF02687 YP_886451.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_886452.1 identified by match to protein family HMM PF03576 YP_886453.1 identified by match to protein family HMM PF05694 YP_886454.1 identified by match to protein family HMM PF01083 YP_886455.1 identified by match to protein family HMM PF01925 YP_886456.1 identified by match to protein family HMM PF03417 YP_886457.1 identified by match to protein family HMM PF01557 YP_886459.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687 YP_886460.1 identified by match to protein family HMM PF00005 YP_886462.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_886465.1 identified by match to protein family HMM PF00440; match to protein family HMM PF02796 YP_886469.1 catalyzes the interconversion of chorismate to prephenate YP_886474.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826 YP_886475.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830 YP_886476.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate YP_886477.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221 YP_886478.1 identified by match to protein family HMM PF00196 YP_886479.1 identified by match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF03610; match to protein family HMM PF05524; match to protein family HMM TIGR01003; match to protein family HMM TIGR01417; match to protein family HMM TIGR02364 YP_886480.1 identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365 YP_886481.1 identified by match to protein family HMM PF02733; match to protein family HMM TIGR02363 YP_886482.1 identified by match to protein family HMM PF00230 YP_886483.1 identified by match to protein family HMM PF01614 YP_886485.1 identified by match to protein family HMM PF04343 YP_886488.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_886489.1 converts medium- to long-chain aliphatic fatty acids into acyl adenylate; involved in mycobactin synthesis YP_886490.1 carries the fatty acid chain in fatty acid biosynthesis YP_886491.1 identified by match to protein family HMM PF02641 YP_886492.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_886493.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_886494.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate YP_886495.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_886497.1 identified by match to protein family HMM PF02661 YP_886504.1 identified by match to protein family HMM PF01844 YP_886506.1 identified by match to protein family HMM PF01695 YP_886507.1 identified by match to protein family HMM PF00665 YP_886508.1 identified by match to protein family HMM PF00440 YP_886510.1 identified by match to protein family HMM PF00107 YP_886511.1 identified by match to protein family HMM PF05368 YP_886513.1 identified by match to protein family HMM PF05114 YP_886517.1 identified by match to protein family HMM PF00171 YP_886518.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_886519.1 identified by match to protein family HMM PF00456 YP_886520.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_886521.1 identified by match to protein family HMM PF00557 YP_886523.1 identified by match to protein family HMM PF03446; match to protein family HMM PF03807 YP_886524.1 identified by match to protein family HMM PF01039 YP_886525.1 identified by match to protein family HMM PF02515 YP_886526.1 identified by match to protein family HMM PF03600; match to protein family HMM PF07158 YP_886527.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_886533.1 identified by match to protein family HMM PF00440 YP_886535.1 identified by match to protein family HMM PF00440 YP_886536.1 identified by match to protein family HMM PF02661 YP_886538.1 identified by match to protein family HMM PF00324 YP_886541.1 identified by match to protein family HMM PF02626; match to protein family HMM PF02682; match to protein family HMM TIGR00724 YP_886542.1 identified by match to protein family HMM PF01425; match to protein family HMM TIGR02713 YP_886543.1 identified by match to protein family HMM PF00892 YP_886544.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_886545.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771 YP_886547.1 identified by match to protein family HMM PF00376; match to protein family HMM PF07739 YP_886548.1 identified by match to protein family HMM PF00440 YP_886549.1 identified by match to protein family HMM PF00440 YP_886551.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00254 YP_886552.1 identified by match to protein family HMM PF00899 YP_886554.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_886555.1 identified by match to protein family HMM PF01575 YP_886556.1 identified by match to protein family HMM PF00743 YP_886557.1 identified by match to protein family HMM PF00561 YP_886558.1 identified by match to protein family HMM PF00106 YP_886559.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_886560.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_886561.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_886562.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_886563.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_886564.1 identified by match to protein family HMM PF01381 YP_886565.1 identified by match to protein family HMM PF00106 YP_886566.1 identified by match to protein family HMM PF00891 YP_886567.1 identified by match to protein family HMM PF00501 YP_886568.1 identified by match to protein family HMM PF00501 YP_886569.1 identified by match to protein family HMM PF00501 YP_886570.1 identified by match to protein family HMM PF00378 YP_886571.1 identified by match to protein family HMM PF00378 YP_886572.1 identified by match to protein family HMM PF00378 YP_886575.1 identified by match to protein family HMM PF00378 YP_886576.1 identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930 YP_886577.1 identified by match to protein family HMM PF00440; match to protein family HMM PF02909 YP_886579.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_886580.1 identified by match to protein family HMM PF00106 YP_886581.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_886582.1 identified by match to protein family HMM PF04909 YP_886583.1 activates fatty acids by binding to coenzyme A; in Mycobacterium may be involved in virulence YP_886584.1 identified by match to protein family HMM PF04909 YP_886585.1 identified by match to protein family HMM PF00441 YP_886586.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_886587.1 identified by match to protein family HMM PF04909 YP_886588.1 identified by match to protein family HMM PF02803 YP_886589.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_886590.1 identified by match to protein family HMM PF00171 YP_886591.1 identified by match to protein family HMM PF00440 YP_886592.1 identified by match to protein family HMM PF00067 YP_886593.1 identified by match to protein family HMM PF00171 YP_886594.1 activates fatty acids by binding to coenzyme A; in Mycobacterium may be involved in virulence YP_886595.1 identified by match to protein family HMM PF00857 YP_886596.1 identified by match to protein family HMM PF00355 YP_886599.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993 YP_886600.1 identified by match to protein family HMM PF00296 YP_886601.1 identified by match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229 YP_886603.1 identified by match to protein family HMM PF00072 YP_886604.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494 YP_886606.1 identified by match to protein family HMM PF00190; match to protein family HMM PF07883 YP_886607.1 identified by match to protein family HMM PF01039 YP_886609.1 identified by match to protein family HMM PF00067 YP_886611.1 identified by match to protein family HMM PF02554 YP_886612.1 identified by match to protein family HMM PF00165 YP_886614.1 identified by match to protein family HMM PF01058 YP_886615.1 identified by match to protein family HMM PF00374 YP_886616.1 identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072 YP_886620.1 identified by match to protein family HMM PF00355; match to protein family HMM PF01106 YP_886621.1 identified by match to protein family HMM PF01436 YP_886623.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073 YP_886624.1 identified by match to protein family HMM PF01155 YP_886625.1 identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143 YP_886626.1 identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074 YP_886627.1 identified by match to protein family HMM PF01924; match to protein family HMM TIGR00075 YP_886628.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124 YP_886629.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA YP_886630.1 identified by match to protein family HMM PF00174; match to protein family HMM PF03404 YP_886631.1 identified by match to protein family HMM PF00106 YP_886632.1 catalyzes the formation of acetate from pyruvate YP_886633.1 identified by similarity to GP:150004; match to protein family HMM PF07929 YP_886634.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_886635.1 identified by match to protein family HMM PF01170 YP_886636.1 identified by match to protein family HMM PF01636 YP_886637.1 identified by match to protein family HMM PF01925 YP_886639.1 identified by match to protein family HMM PF00067 YP_886640.1 identified by match to protein family HMM PF00440 YP_886641.1 identified by match to protein family HMM PF00106 YP_886642.1 identified by match to protein family HMM PF00245 YP_886644.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_886645.1 identified by match to protein family HMM PF00440 YP_886646.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_886647.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02194 YP_886648.1 Catalyzes the rate-limiting step in dNTP synthesis YP_886649.1 identified by match to protein family HMM PF00903 YP_886651.1 identified by match to protein family HMM PF07690 YP_886653.1 identified by match to protein family HMM PF00583 YP_886654.1 identified by match to protein family HMM PF00440 YP_886655.1 identified by match to protein family HMM PF00296 YP_886656.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR02032 YP_886657.1 identified by match to protein family HMM PF00440 YP_886661.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_886662.1 identified by match to protein family HMM PF00756 YP_886664.1 identified by match to protein family HMM PF00107 YP_886665.1 identified by match to protein family HMM PF03795 YP_886666.1 identified by match to protein family HMM PF01497 YP_886667.1 identified by match to protein family HMM PF00702; match to protein family HMM PF01842; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488 YP_886669.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_886671.1 identified by match to protein family HMM PF02588 YP_886672.1 identified by match to protein family HMM PF00005 YP_886673.1 identified by match to protein family HMM PF00293 YP_886674.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_886678.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_886681.1 identified by match to protein family HMM PF00132 YP_886682.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate YP_886683.1 identified by similarity to GP:150004; match to protein family HMM PF07929 YP_886684.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_886686.1 identified by match to protein family HMM PF00201; match to protein family HMM PF03033; match to protein family HMM TIGR01426 YP_886688.1 identified by match to protein family HMM PF00355 YP_886689.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01593 YP_886690.1 identified by match to protein family HMM PF00494 YP_886691.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734 YP_886692.1 identified by match to protein family HMM PF03065 YP_886694.1 identified by similarity to SP:O85691; match to protein family HMM PF01012 YP_886695.1 identified by similarity to SP:P38974; match to protein family HMM PF00766; match to protein family HMM PF01012 YP_886696.1 identified by match to protein family HMM PF01113; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368 YP_886697.1 identified by match to protein family HMM PF00881 YP_886699.1 identified by match to protein family HMM PF01553 YP_886700.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212 YP_886701.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_886702.1 identified by match to protein family HMM PF01717 YP_886703.1 identified by match to protein family HMM PF00501 YP_886705.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB YP_886706.1 identified by match to protein family HMM PF01842 YP_886707.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_886708.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_886709.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_886710.1 identified by match to protein family HMM PF00440 YP_886712.1 identified by match to protein family HMM PF07681 YP_886714.1 acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate YP_886715.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_886716.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_886717.1 identified by match to protein family HMM PF00258; match to protein family HMM PF03358; match to protein family HMM TIGR01755 YP_886720.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_886721.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_886722.1 identified by match to protein family HMM PF07690 YP_886724.1 identified by match to protein family HMM PF01557 YP_886725.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_886726.1 identified by match to protein family HMM PF01614 YP_886727.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_886728.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_886729.1 identified by match to protein family HMM PF00216 YP_886730.1 identified by match to protein family HMM PF00293; match to protein family HMM PF00300 YP_886731.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_886732.1 identified by match to protein family HMM PF01983 YP_886733.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_886734.1 catalyzes the formation of cysteine and 2-oxobutanoate from cystathionine YP_886735.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_886737.1 identified by match to protein family HMM PF01037 YP_886738.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP YP_886739.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_886741.1 required for 70S ribosome assembly YP_886742.1 identified by match to protein family HMM PF02734 YP_886743.1 catalyzes branch migration in Holliday junction intermediates YP_886745.1 identified by match to protein family HMM PF00583 YP_886746.1 identified by match to protein family HMM PF00440 YP_886747.1 identified by match to protein family HMM PF00248 YP_886748.1 identified by match to protein family HMM PF00248 YP_886749.1 identified by match to protein family HMM PF07859 YP_886751.1 identified by match to protein family HMM PF07884 YP_886752.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate YP_886753.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_886754.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_886755.1 identified by match to protein family HMM PF01814 YP_886757.1 identified by match to protein family HMM PF02620 YP_886758.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_886759.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_886761.1 identified by match to protein family HMM PF02566 YP_886762.1 identified by match to protein family HMM PF00708 YP_886763.1 identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR02168 YP_886764.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_886765.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836 YP_886766.1 identified by match to protein family HMM PF00543 YP_886767.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; also involved in adenylylating and deadelnylyating GlnK YP_886769.1 identified by match to protein family HMM PF00248 YP_886770.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_886771.1 identified by match to protein family HMM PF01979 YP_886772.1 identified by match to protein family HMM PF00768 YP_886773.1 identified by match to protein family HMM PF00768 YP_886775.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_886777.1 Essential for efficient processing of 16S rRNA YP_886778.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_886780.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_886781.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_886782.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_886784.1 identified by match to protein family HMM PF01738 YP_886785.1 identified by match to protein family HMM PF02696 YP_886787.1 identified by match to protein family HMM PF07905 YP_886789.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_886790.1 identified by match to protein family HMM PF00202 YP_886791.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460 YP_886793.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_886794.1 identified by match to protein family HMM PF01042 YP_886795.1 identified by match to protein family HMM PF06240 YP_886796.1 identified by match to protein family HMM PF00296 YP_886799.1 identified by match to protein family HMM PF00005 YP_886800.1 identified by match to protein family HMM PF00528 YP_886801.1 identified by match to protein family HMM PF00528 YP_886802.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738 YP_886803.1 identified by match to protein family HMM PF00941 YP_886804.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799 YP_886805.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_886806.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_886807.1 identified by match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM PF02780 YP_886808.1 identified by match to protein family HMM PF02515 YP_886809.1 identified by match to protein family HMM PF02551 YP_886810.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550 YP_886811.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_886812.1 identified by match to protein family HMM PF01037 YP_886813.1 identified by match to protein family HMM PF01083; match to protein family HMM PF02230 YP_886814.1 identified by match to protein family HMM PF00248 YP_886815.1 identified by match to protein family HMM PF01047 YP_886816.1 identified by match to protein family HMM PF00106 YP_886817.1 identified by match to protein family HMM PF01557 YP_886819.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_886822.1 identified by match to protein family HMM PF01614 YP_886824.1 catalyzes the formation of 3-(2,3-dihydroxyphenyl)propionate from 3-(3-hydroxyphenyl)propionate YP_886825.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_886826.1 identified by match to protein family HMM PF00202 YP_886827.1 identified by match to protein family HMM PF00171 YP_886828.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_886829.1 identified by match to protein family HMM PF01177 YP_886830.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913 YP_886831.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01910 YP_886832.1 identified by match to protein family HMM PF00155 YP_886833.1 identified by match to protein family HMM PF00557 YP_886834.1 identified by match to protein family HMM PF01177 YP_886835.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_886836.1 identified by match to protein family HMM PF01425 YP_886839.1 identified by match to protein family HMM PF00528 YP_886840.1 identified by match to protein family HMM PF00528 YP_886841.1 identified by match to protein family HMM PF00005 YP_886843.1 identified by match to protein family HMM TIGR02087 YP_886844.1 identified by match to protein family HMM PF00330 YP_886846.1 identified by match to protein family HMM PF01614 YP_886847.1 identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252 YP_886848.1 identified by match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368 YP_886849.1 identified by match to protein family HMM PF04954; match to protein family HMM PF08021 YP_886850.1 identified by match to protein family HMM PF01070 YP_886852.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_886853.1 identified by match to protein family HMM PF00561 YP_886854.1 identified by match to protein family HMM PF00296 YP_886855.1 identified by match to protein family HMM PF01551 YP_886856.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_886857.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_886858.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_886859.1 identified by match to protein family HMM PF02687 YP_886860.1 identified by match to protein family HMM PF02687 YP_886861.1 identified by match to protein family HMM PF00005 YP_886862.1 identified by match to protein family HMM PF00324 YP_886863.1 catalyzes the formation of phenylacetaldehyde from 2-phenylethylamine YP_886865.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_886866.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_886867.1 identified by match to protein family HMM PF02627 YP_886868.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_886869.1 identified by match to protein family HMM PF01220 YP_886871.1 identified by match to protein family HMM PF00561 YP_886872.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_886873.1 identified by match to protein family HMM PF00106 YP_886874.1 identified by match to protein family HMM PF07690 YP_886875.1 identified by match to protein family HMM PF01047 YP_886876.1 identified by match to protein family HMM PF05724 YP_886877.1 Catalyzes the phosphorylation of UMP to UDP YP_886878.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_886879.1 identified by match to protein family HMM PF01148 YP_886880.1 identified by match to protein family HMM PF00892 YP_886881.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_886882.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_886883.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_886884.1 identified by match to protein family HMM PF04198 YP_886885.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_886886.1 identified by match to protein family HMM PF07690 YP_886887.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_886889.1 identified by match to protein family HMM PF00171 YP_886890.1 identified by match to protein family HMM PF00440 YP_886891.1 identified by match to protein family HMM PF01636 YP_886893.1 identified by match to protein family HMM PF00933; match to protein family HMM PF01915 YP_886894.1 identified by match to protein family HMM PF00440 YP_886895.1 identified by match to protein family HMM PF00067 YP_886898.1 identified by match to protein family HMM PF03758 YP_886900.1 identified by match to protein family HMM PF00067 YP_886901.1 identified by match to protein family HMM PF00107 YP_886902.1 identified by match to protein family HMM PF03328 YP_886903.1 identified by match to protein family HMM PF00106 YP_886905.1 identified by match to protein family HMM PF07859 YP_886906.1 identified by match to protein family HMM PF03171 YP_886907.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM TIGR00801 YP_886910.1 identified by match to protein family HMM PF04248 YP_886913.1 identified by match to protein family HMM PF00875; match to protein family HMM PF03441 YP_886915.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_886916.1 identified by match to protein family HMM PF02163 YP_886917.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_886918.1 identified by match to protein family HMM PF00583 YP_886920.1 identified by match to protein family HMM PF00440; match to protein family HMM PF02909 YP_886921.1 identified by match to protein family HMM PF00905; match to protein family HMM PF05223 YP_886922.1 identified by match to protein family HMM PF08044 YP_886923.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_886924.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mnin Bacillus subtilis the protein in this cluster is considered non-essential YP_886925.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_886927.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_886930.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR03103 YP_886931.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; match to protein family HMM TIGR03104 YP_886932.1 identified by match to protein family HMM PF00120 YP_886933.1 identified by match to protein family HMM PF00117; match to protein family HMM PF07722 YP_886934.1 identified by match to protein family HMM PF00171 YP_886935.1 identified by match to protein family HMM PF00106 YP_886936.1 identified by match to protein family HMM PF00392; match to protein family HMM PF02082; match to protein family HMM PF07729 YP_886937.1 identified by match to protein family HMM PF01614 YP_886938.1 identified by match to protein family HMM PF00775; match to protein family HMM TIGR02422 YP_886939.1 identified by match to protein family HMM PF00775; match to protein family HMM TIGR02423 YP_886940.1 identified by match to protein family HMM PF00206; match to protein family HMM TIGR02426 YP_886941.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR02425 YP_886942.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_886943.1 identified by match to protein family HMM PF01022; match to protein family HMM PF07848 YP_886944.1 identified by match to protein family HMM PF01891 YP_886946.1 identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454 YP_886947.1 identified by match to protein family HMM PF00005 YP_886948.1 catalyzes the reduction of mycothione or glutathione to mycothione or glutathione disulfide YP_886950.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate YP_886951.1 identified by match to protein family HMM PF00583 YP_886952.1 identified by match to protein family HMM PF00092; match to protein family HMM PF01078; match to protein family HMM PF07728 YP_886953.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide YP_886954.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid YP_886955.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; match to protein family HMM TIGR01470 YP_886956.1 identified by match to protein family HMM PF07690 YP_886958.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_886960.1 identified by match to protein family HMM TIGR01409 YP_886961.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_886962.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_886963.1 identified by match to protein family HMM PF04296 YP_886965.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF04760; match to protein family HMM TIGR00231; match to protein family HMM TIGR00487 YP_886966.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_886967.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_886968.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_886969.1 identified by match to protein family HMM PF01209 YP_886970.1 identified by match to protein family HMM PF00005 YP_886972.1 identified by match to protein family HMM PF00528 YP_886973.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_886974.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_886975.1 identified by match to protein family HMM PF06187 YP_886976.1 identified by match to protein family HMM PF01261 YP_886977.1 identified by match to protein family HMM PF00892 YP_886978.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_886981.1 identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976 YP_886983.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_886984.1 identified by match to protein family HMM PF00149 YP_886985.1 identified by match to protein family HMM PF01648 YP_886986.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_886987.1 identified by match to protein family HMM PF00441; match to protein family HMM PF08028 YP_886988.1 identified by similarity to SP:P40402 YP_886989.1 identified by match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023 YP_886990.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_886991.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_886993.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; match to protein family HMM TIGR02696 YP_886994.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_886995.1 identified by match to protein family HMM PF00144; match to protein family HMM TIGR01409 YP_886996.1 identified by match to protein family HMM PF01262; match to protein family HMM PF02826; match to protein family HMM PF05222; match to protein family HMM TIGR00518 YP_886997.1 identified by match to protein family HMM PF01037 YP_886998.1 identified by match to protein family HMM PF03724 YP_887000.1 identified by match to protein family HMM PF02720 YP_887001.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_887005.1 identified by match to protein family HMM PF03328 YP_887006.1 identified by match to protein family HMM PF01738 YP_887007.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_887008.1 identified by match to protein family HMM PF00186 YP_887010.1 identified by similarity to SP:P37248; match to protein family HMM PF00665 YP_887011.1 similar at the nucleotide level to IS1137 in the IS Finder database.; identified by match to protein family HMM PF01527 YP_887012.1 identified by match to protein family HMM PF03176 YP_887014.1 identified by match to protein family HMM PF06224 YP_887015.1 identified by match to protein family HMM PF00324 YP_887016.1 identified by match to protein family HMM PF00561; match to protein family HMM TIGR01250 YP_887017.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_887018.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor YP_887019.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_887020.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521 YP_887022.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_887023.1 identified by match to protein family HMM PF03992 YP_887024.1 identified by match to protein family HMM PF01580 YP_887026.1 catalyzes the conversion of l-glutamate to a-N-acetyl-l-glutamate in arginine biosynthesis YP_887027.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_887028.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199 YP_887029.1 identified by match to protein family HMM PF01381 YP_887030.1 identified by match to protein family HMM PF04012 YP_887033.1 identified by match to protein family HMM PF07366; match to protein family HMM PF07858 YP_887037.1 identified by match to protein family HMM PF01924; match to protein family HMM TIGR00075 YP_887038.1 identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074 YP_887039.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124 YP_887045.1 identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143 YP_887046.1 identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074 YP_887047.1 identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072 YP_887052.1 identified by match to protein family HMM PF01106 YP_887053.1 identified by match to protein family HMM PF00374 YP_887054.1 identified by match to protein family HMM PF01058 YP_887055.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073 YP_887056.1 identified by match to protein family HMM PF01155 YP_887057.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_887058.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_887059.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_887060.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_887061.1 identified by match to protein family HMM PF00497 YP_887062.1 identified by match to protein family HMM PF00005 YP_887063.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_887064.1 identified by match to protein family HMM PF03993 YP_887067.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_887068.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_887069.1 identified by match to protein family HMM PF01926 YP_887071.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR00509 YP_887073.1 Represses a number of genes involved in the response to DNA damage YP_887075.1 identified by match to protein family HMM PF01476 YP_887076.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_887077.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_887078.1 identified by match to protein family HMM PF01908 YP_887079.1 catalyzes the conversion of NADPH to NADH YP_887081.1 identified by match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023 YP_887083.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma factors in this cluster are active during stationary phase YP_887086.1 identified by match to protein family HMM PF03631 YP_887088.1 identified by match to protein family HMM PF06108 YP_887090.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released YP_887091.1 identified by match to protein family HMM PF00480 YP_887092.1 identified by match to protein family HMM PF00459 YP_887096.1 catalyzes the formation of dUMP from dUTP YP_887099.1 identified by match to protein family HMM PF01336 YP_887101.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254 YP_887102.1 identified by match to protein family HMM PF02254 YP_887103.1 identified by match to protein family HMM PF00324 YP_887104.1 cg2084; identified by match to protein family HMM PF01938 YP_887105.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_887106.1 identified by match to protein family HMM PF00999; match to protein family HMM PF06965; match to protein family HMM TIGR00773 YP_887107.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_887108.1 identified by match to protein family HMM PF00561 YP_887109.1 identified by match to protein family HMM PF00570; match to protein family HMM PF01612 YP_887111.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_887112.1 catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX YP_887113.1 identified by match to protein family HMM PF06778 YP_887115.1 identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357 YP_887117.1 identified by match to protein family HMM PF00561 YP_887118.1 identified by match to protein family HMM PF01872 YP_887119.1 identified by match to protein family HMM PF03969 YP_887120.1 identified by match to protein family HMM PF00583 YP_887122.1 identified by match to protein family HMM PF01243 YP_887123.1 identified by match to protein family HMM PF02861 YP_887124.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_887125.1 identified by similarity to SP:P33233; match to protein family HMM PF00392; match to protein family HMM PF07729 YP_887126.1 identified by match to protein family HMM PF07690 YP_887127.1 identified by match to protein family HMM PF03595 YP_887128.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_887129.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_887131.1 identified by match to protein family HMM PF03358 YP_887135.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229 YP_887137.1 identified by similarity to GB:CAD18826.1 YP_887138.1 identified by match to protein family HMM PF00196 YP_887139.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_887141.1 identified by match to protein family HMM PF07690 YP_887142.1 identified by match to protein family HMM PF00296 YP_887144.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_887146.1 This gene is similar at the protein level with ISRru1 in the IS Finder database.; identified by similarity to GP:16551202; match to protein family HMM PF00665 YP_887147.1 similar at the protein level to ISRru1 in the IS Finder database.; identified by similarity to GP:16551202; match to protein family HMM PF01527 YP_887149.1 identified by similarity to GP:2935133; match to protein family HMM PF01609 YP_887152.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_887153.1 identified by similarity to GP:150004; match to protein family HMM PF07929 YP_887154.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_887157.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568 YP_887159.1 identified by match to protein family HMM PF00575 YP_887164.1 identified by match to protein family HMM PF00005 YP_887165.1 identified by match to protein family HMM PF00528 YP_887166.1 identified by match to protein family HMM PF00528 YP_887167.1 identified by match to protein family HMM PF00496 YP_887168.1 identified by match to protein family HMM PF07690 YP_887169.1 identified by match to protein family HMM PF01638 YP_887170.1 identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026 YP_887172.1 identified by match to protein family HMM PF00106 YP_887173.1 identified by match to protein family HMM PF02405 YP_887174.1 identified by match to protein family HMM PF02405 YP_887175.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_887176.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_887177.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_887178.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_887179.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_887180.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_887186.1 identified by match to protein family HMM PF03061 YP_887187.1 catalyzes transhydrogenation of 3-keto-4-ene-steroid to 3-keto-1,4-diene-steroid e.g., progesterone to 1,4-androstadiene-3,17-dione YP_887188.1 identified by match to protein family HMM PF03551 YP_887189.1 initiates steroid ring degradation; catalyzes the transhydrogenation of 3-keto-4-ene-steroid to 3-keto-1,4-diene-steroid e.g., progesterone to 1,4-androstadiene-3,17-dione YP_887190.1 identified by match to protein family HMM PF00355 YP_887192.1 identified by match to protein family HMM PF00106 YP_887193.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01266 YP_887195.1 identified by match to protein family HMM PF07859 YP_887196.1 identified by match to protein family HMM PF00106 YP_887198.1 identified by match to protein family HMM PF00441 YP_887199.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771 YP_887200.1 identified by match to protein family HMM PF00378 YP_887201.1 identified by match to protein family HMM PF00171 YP_887202.1 identified by match to protein family HMM PF00107 YP_887203.1 activates fatty acids by binding to coenzyme A YP_887205.1 identified by match to protein family HMM PF00106 YP_887206.1 identified by match to protein family HMM PF07876 YP_887208.1 identified by match to protein family HMM PF00724 YP_887209.1 identified by match to protein family HMM PF07859 YP_887210.1 identified by match to protein family HMM PF01614 YP_887211.1 identified by match to protein family HMM PF00903 YP_887212.1 identified by match to protein family HMM PF08028 YP_887213.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_887214.1 identified by match to protein family HMM PF01266 YP_887215.1 identified by match to protein family HMM PF00106 YP_887216.1 identified by match to protein family HMM PF00296 YP_887218.1 identified by match to protein family HMM PF00440 YP_887219.1 identified by match to protein family HMM PF00106; match to protein family HMM PF07993 YP_887221.1 identified by match to protein family HMM PF00561 YP_887222.1 identified by match to protein family HMM PF00795 YP_887224.1 identified by match to protein family HMM PF01638 YP_887226.1 identified by match to protein family HMM PF01232; match to protein family HMM PF08125 YP_887227.1 identified by match to protein family HMM PF00294 YP_887228.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_887229.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_887230.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_887231.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_887232.1 identified by match to protein family HMM PF00107 YP_887233.1 identified by match to protein family HMM PF00561 YP_887234.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_887235.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_887237.1 identified by match to protein family HMM PF00106 YP_887238.1 identified by match to protein family HMM PF02558 YP_887239.1 identified by match to protein family HMM PF00248 YP_887240.1 identified by match to protein family HMM PF00881 YP_887242.1 identified by match to protein family HMM PF00106 YP_887243.1 identified by match to protein family HMM PF04069 YP_887244.1 identified by match to protein family HMM PF00528 YP_887245.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186 YP_887246.1 identified by match to protein family HMM PF00528 YP_887248.1 identified by match to protein family HMM PF03061 YP_887249.1 identified by match to protein family HMM TIGR02611 YP_887250.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_887251.1 identified by match to protein family HMM PF01230 YP_887252.1 identified by match to protein family HMM PF01066 YP_887253.1 acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA YP_887254.1 identified by match to protein family HMM PF00534 YP_887255.1 identified by match to protein family HMM PF00293 YP_887256.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate YP_887257.1 identified by match to protein family HMM PF02551; match to protein family HMM TIGR00189 YP_887258.1 with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate YP_887259.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_887260.1 identified by match to protein family HMM PF01370; match to protein family HMM PF05368 YP_887261.1 identified by match to protein family HMM PF00903 YP_887262.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_887263.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_887264.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_887265.1 identified by match to protein family HMM PF06993 YP_887266.1 identified by match to protein family HMM PF04199 YP_887267.1 identified by match to protein family HMM PF00378 YP_887268.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738 YP_887269.1 identified by match to protein family HMM PF00941 YP_887270.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799 YP_887271.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_887272.1 identified by match to protein family HMM PF07110; match to protein family HMM TIGR02118 YP_887273.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_887275.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746 YP_887278.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate YP_887279.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_887280.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_887281.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_887282.1 identified by match to protein family HMM PF00496 YP_887283.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_887284.1 identified by similarity to SP:P52560; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_887285.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_887286.1 identified by similarity to GB:BAC46503.1; match to protein family HMM PF01613 YP_887288.1 identified by match to protein family HMM PF00724 YP_887289.1 identified by match to protein family HMM PF01522 YP_887291.1 identified by match to protein family HMM PF02133 YP_887292.1 identified by match to protein family HMM PF00160 YP_887293.1 identified by match to protein family HMM PF00160 YP_887294.1 identified by match to protein family HMM PF00753 YP_887295.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_887297.1 identified by match to protein family HMM PF00005 YP_887298.1 identified by match to protein family HMM PF00005 YP_887299.1 identified by match to protein family HMM PF02653 YP_887300.1 identified by match to protein family HMM PF02653 YP_887301.1 identified by match to protein family HMM PF01094 YP_887303.1 identified by match to protein family HMM PF00561 YP_887304.1 identified by match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723 YP_887305.1 identified by match to protein family HMM PF01425 YP_887306.1 identified by match to protein family HMM PF00795 YP_887307.1 identified by match to protein family HMM PF00532 YP_887308.1 identified by match to protein family HMM PF04055 YP_887309.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00710 YP_887310.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_887311.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02771 YP_887312.1 identified by match to protein family HMM PF04909 YP_887313.1 identified by match to protein family HMM PF00440 YP_887314.1 identified by match to protein family HMM PF00296 YP_887317.1 identified by match to protein family HMM PF05960 YP_887318.1 identified by match to protein family HMM PF04228 YP_887319.1 identified by match to protein family HMM PF00135 YP_887321.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_887322.1 identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026 YP_887323.1 Converts (S)-3-hydroxyactk-CoA to 3-oxoayl-CoA YP_887324.1 identified by match to protein family HMM PF00465 YP_887325.1 identified by match to protein family HMM PF00171 YP_887326.1 identified by match to protein family HMM PF01590; match to protein family HMM PF02954 YP_887327.1 identified by match to protein family HMM PF00106 YP_887328.1 identified by match to protein family HMM PF07859 YP_887329.1 identified by match to protein family HMM PF01266 YP_887330.1 identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930 YP_887331.1 identified by match to protein family HMM PF01638 YP_887332.1 identified by match to protein family HMM PF04944 YP_887334.1 identified by match to protein family HMM PF01841 YP_887335.1 identified by match to protein family HMM PF04168; match to protein family HMM PF04169; match to protein family HMM PF04174 YP_887336.1 identified by match to protein family HMM PF01841 YP_887339.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF07728 YP_887341.1 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149 YP_887342.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_887343.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_887344.1 identified by match to protein family HMM PF02618 YP_887345.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_887346.1 identified by match to protein family HMM PF01478 YP_887347.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_887348.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_887349.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_887351.1 identified by match to protein family HMM PF00557 YP_887352.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_887353.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_887355.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494 YP_887356.1 identified by match to protein family HMM PF00144 YP_887357.1 identified by match to protein family HMM PF03848; match to protein family HMM PF05724 YP_887358.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_887359.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_887360.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_887362.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_887363.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_887364.1 type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_887367.1 Essential for recycling GMP and indirectly, cGMP YP_887369.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and subunit alphas YP_887370.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine YP_887371.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_887372.1 identified by match to protein family HMM PF00005 YP_887373.1 identified by match to protein family HMM PF00528 YP_887374.1 identified by match to protein family HMM PF03180 YP_887375.1 identified by match to protein family HMM PF07859 YP_887376.1 identified by match to protein family HMM PF07947 YP_887377.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_887379.1 identified by match to protein family HMM PF04011 YP_887380.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_887381.1 identified by match to protein family HMM PF01029; match to protein family HMM PF01189 YP_887382.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_887383.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326 YP_887385.1 identified by match to protein family HMM PF07690 YP_887386.1 identified by match to protein family HMM PF07161 YP_887387.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_887388.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate YP_887389.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; subunit beta of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_887391.1 identified by similarity to GB:AAK38651.1; match to protein family HMM PF00583 YP_887392.1 identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066 YP_887394.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_887395.1 identified by match to protein family HMM PF03668 YP_887396.1 identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826 YP_887397.1 identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647 YP_887399.1 identified by match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01777 YP_887400.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_887401.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_887402.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_887403.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_887404.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_887405.1 identified by match to protein family HMM PF02653 YP_887406.1 identified by match to protein family HMM PF00005 YP_887407.1 identified by match to protein family HMM PF04198 YP_887408.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_887409.1 identified by match to protein family HMM PF00107 YP_887411.1 identified by match to protein family HMM PF00532 YP_887412.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_887414.1 identified by match to protein family HMM PF01182; match to protein family HMM TIGR01198 YP_887415.1 identified by match to protein family HMM TIGR00534 YP_887416.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_887417.1 catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate YP_887418.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_887420.1 converts protoheme IX and farnesyl diphosphate to heme O YP_887421.1 identified by match to protein family HMM PF00107 YP_887423.1 identified by match to protein family HMM PF00005 YP_887424.1 identified by match to protein family HMM PF00528 YP_887425.1 identified by match to protein family HMM PF00528 YP_887426.1 identified by match to protein family HMM PF01547 YP_887427.1 identified by match to protein family HMM PF00106 YP_887428.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_887429.1 identified by match to protein family HMM PF03437; match to protein family HMM TIGR00259 YP_887430.1 identified by match to protein family HMM PF00459 YP_887431.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220 YP_887432.1 identified by match to protein family HMM PF02628 YP_887433.1 identified by match to protein family HMM PF01061; match to protein family HMM TIGR00025 YP_887434.1 identified by match to protein family HMM PF00005 YP_887436.1 identified by match to protein family HMM PF01022 YP_887437.1 identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980 YP_887438.1 identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981 YP_887439.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978 YP_887440.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR01979 YP_887441.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994 YP_887442.1 identified by match to protein family HMM PF01883 YP_887444.1 identified by match to protein family HMM PF00440 YP_887446.1 identified by match to protein family HMM PF00501 YP_887448.1 identified by match to protein family HMM PF00067 YP_887452.1 identified by match to protein family HMM PF00724 YP_887453.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_887454.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_887455.1 identified by match to protein family HMM PF00005 YP_887457.1 identified by match to protein family HMM PF00440 YP_887458.1 identified by match to protein family HMM PF00330; match to protein family HMM PF00694; match to protein family HMM TIGR01341 YP_887460.1 identified by match to protein family HMM PF00877 YP_887461.1 identified by match to protein family HMM PF00877 YP_887462.1 identified by match to protein family HMM PF07726; match to protein family HMM PF07728 YP_887464.1 identified by match to protein family HMM PF00092 YP_887465.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM TIGR01830 YP_887466.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_887467.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_887469.1 identified by match to protein family HMM PF01957 YP_887470.1 identified by match to protein family HMM PF01145 YP_887473.1 identified by match to protein family HMM PF01642; match to protein family HMM TIGR00642 YP_887474.1 MDM; functions in conversion of succinate to propionate YP_887475.1 functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transporters, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins YP_887477.1 identified by match to protein family HMM PF00144 YP_887480.1 identified by similarity to GP:150004; match to protein family HMM PF07929 YP_887481.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_887484.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin) YP_887485.1 identified by match to protein family HMM PF01479 YP_887486.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_887488.1 identified by match to protein family HMM PF00710 YP_887489.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_887490.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_887491.1 identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688 YP_887492.1 identified by match to protein family HMM PF00440 YP_887493.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_887494.1 identified by match to protein family HMM PF01243 YP_887495.1 identified by match to protein family HMM PF00376 YP_887498.1 catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic YP_887499.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402 YP_887500.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100 YP_887501.1 identified by match to protein family HMM PF01757 YP_887502.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate YP_887503.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine YP_887504.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_887506.1 identified by match to protein family HMM TIGR03083 YP_887507.1 identified by match to protein family HMM PF00440; match to protein family HMM PF02909 YP_887508.1 catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine YP_887511.1 identified by match to protein family HMM PF03583 YP_887512.1 identified by match to protein family HMM PF00293 YP_887513.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_887514.1 catalyzes the formation of oxaloacetate from L-aspartate YP_887515.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide YP_887517.1 identified by match to protein family HMM PF01810 YP_887518.1 identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026 YP_887519.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_887520.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_887521.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_887522.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_887523.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide and the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)anthranilate; involved in histidine and tryptophan biosynthesis YP_887524.1 identified by match to protein family HMM PF00459 YP_887525.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_887526.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_887529.1 identified by match to protein family HMM PF00005 YP_887530.1 identified by match to protein family HMM PF00578 YP_887531.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_887532.1 identified by match to protein family HMM TIGR02234 YP_887533.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_887534.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_887535.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_887536.1 identified by match to protein family HMM PF01790; match to protein family HMM TIGR00544 YP_887537.1 identified by match to protein family HMM PF05154 YP_887539.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898 YP_887540.1 identified by match to protein family HMM PF01266; match to protein family HMM PF07992; match to protein family HMM TIGR01317 YP_887541.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_887542.1 identified by match to protein family HMM PF02551 YP_887544.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02857 YP_887545.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_887546.1 identified by match to protein family HMM PF01654 YP_887547.1 identified by match to protein family HMM PF03729 YP_887548.1 identified by match to protein family HMM PF00497 YP_887549.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_887550.1 identified by match to protein family HMM PF00005 YP_887551.1 identified by match to protein family HMM PF00581 YP_887552.1 identified by match to protein family HMM PF02518 YP_887553.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_887555.1 identified by match to protein family HMM PF00210 YP_887557.1 identified by match to protein family HMM PF00072; match to protein family HMM PF03861 YP_887558.1 identified by match to protein family HMM PF01094 YP_887559.1 identified by match to protein family HMM PF02653 YP_887560.1 identified by match to protein family HMM PF02653 YP_887561.1 identified by match to protein family HMM PF00005 YP_887562.1 identified by match to protein family HMM PF00005 YP_887563.1 identified by match to protein family HMM PF02694 YP_887565.1 identified by match to protein family HMM PF06271 YP_887566.1 identified by match to protein family HMM PF07681 YP_887568.1 identified by similarity to SP:P09099; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312 YP_887570.1 identified by match to protein family HMM PF08028 YP_887571.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_887573.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_887574.1 identified by match to protein family HMM PF00106 YP_887575.1 identified by match to protein family HMM PF04198 YP_887576.1 identified by match to protein family HMM PF00107 YP_887577.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409 YP_887578.1 identified by match to protein family HMM PF00528 YP_887579.1 identified by match to protein family HMM PF00528 YP_887580.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459 YP_887581.1 identified by match to protein family HMM PF00005 YP_887582.1 in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone YP_887583.1 identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR02133 YP_887584.1 identified by match to protein family HMM PF01546; match to protein family HMM PF05343 YP_887585.1 identified by match to protein family HMM PF00376 YP_887586.1 identified by match to protein family HMM TIGR02937 YP_887587.1 identified by match to protein family HMM PF00892 YP_887589.1 identified by match to protein family HMM PF00528 YP_887590.1 identified by match to protein family HMM PF00528 YP_887591.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409 YP_887592.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM TIGR01187 YP_887594.1 identified by match to protein family HMM PF07690 YP_887595.1 identified by match to protein family HMM PF01047 YP_887596.1 identified by match to protein family HMM PF00180 YP_887598.1 identified by match to protein family HMM PF00561 YP_887599.1 identified by match to protein family HMM PF01476 YP_887600.1 identified by match to protein family HMM PF00561 YP_887601.1 identified by match to protein family HMM PF00196 YP_887607.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_887608.1 identified by match to protein family HMM PF00486; match to protein family HMM PF00561 YP_887609.1 identified by match to protein family HMM PF07080 YP_887610.1 identified by match to protein family HMM PF01408 YP_887611.1 identified by match to protein family HMM PF00296 YP_887612.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_887613.1 identified by match to protein family HMM PF03403 YP_887614.1 identified by match to protein family HMM PF00171 YP_887615.1 identified by match to protein family HMM PF00892 YP_887616.1 identified by match to protein family HMM PF00107 YP_887617.1 identified by match to protein family HMM PF00582 YP_887618.1 catalyzes the formation of L-tryptophan from indole and L-serine YP_887619.1 identified by match to protein family HMM PF06724 YP_887621.1 identified by match to protein family HMM PF01814 YP_887622.1 identified by match to protein family HMM PF00480 YP_887623.1 identified by match to protein family HMM PF07690 YP_887625.1 identified by match to protein family HMM PF01113; match to protein family HMM PF01408; match to protein family HMM PF02629 YP_887626.1 identified by match to protein family HMM PF07690 YP_887627.1 identified by match to protein family HMM PF01494 YP_887628.1 identified by match to protein family HMM PF00440 YP_887634.1 identified by match to protein family HMM PF04107; match to protein family HMM TIGR02050 YP_887638.1 identified by match to protein family HMM PF05532 YP_887640.1 identified by match to protein family HMM PF00440; match to protein family HMM PF02909 YP_887642.1 identified by match to protein family HMM PF01614 YP_887643.1 identified by match to protein family HMM PF00561 YP_887645.1 identified by match to protein family HMM PF00724 YP_887648.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_887652.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_887653.1 identified by match to protein family HMM PF03328 YP_887654.1 identified by match to protein family HMM PF00795 YP_887655.1 identified by match to protein family HMM PF03480 YP_887657.1 identified by match to protein family HMM PF06808 YP_887661.1 identified by match to protein family HMM PF00440 YP_887662.1 identified by similarity to GB:CAE31701.1; match to protein family HMM PF01370; match to protein family HMM PF05368 YP_887663.1 identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026 YP_887665.1 identified by match to protein family HMM PF07152 YP_887666.1 identified by match to protein family HMM PF01361 YP_887667.1 identified by match to protein family HMM PF00440 YP_887669.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_887670.1 identified by match to protein family HMM PF00440 YP_887671.1 identified by match to protein family HMM PF01810 YP_887672.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_887673.1 identified by match to protein family HMM PF01965 YP_887674.1 identified by match to protein family HMM PF00106 YP_887676.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_887678.1 identified by match to protein family HMM PF01022 YP_887679.1 identified by match to protein family HMM PF07690 YP_887681.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_887682.1 identified by match to protein family HMM PF00753 YP_887684.1 identified by match to protein family HMM PF00106 YP_887685.1 identified by match to protein family HMM PF00144 YP_887686.1 identified by match to protein family HMM PF01243 YP_887687.1 identified by match to protein family HMM PF02525 YP_887688.1 identified by match to protein family HMM PF01022 YP_887690.1 identified by match to protein family HMM PF05368 YP_887692.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_887693.1 identified by match to protein family HMM PF00171 YP_887694.1 identified by match to protein family HMM PF00107 YP_887695.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_887696.1 identified by match to protein family HMM PF00378 YP_887697.1 identified by match to protein family HMM PF02515 YP_887698.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_887699.1 identified by match to protein family HMM PF00441 YP_887700.1 identified by match to protein family HMM PF07883 YP_887701.1 identified by match to protein family HMM PF00106 YP_887702.1 identified by match to protein family HMM PF01614 YP_887703.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine YP_887704.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_887705.1 identified by match to protein family HMM PF00392; match to protein family HMM PF01425; match to protein family HMM PF07729 YP_887706.1 identified by match to protein family HMM PF03746 YP_887707.1 identified by match to protein family HMM PF02133 YP_887708.1 formamide amidohydrolase; catalyzes the hydrolysis of formamide to formate YP_887709.1 identified by match to protein family HMM PF01844 YP_887710.1 identified by match to protein family HMM PF07690 YP_887712.1 identified by match to protein family HMM PF00561; match to protein family HMM PF06441 YP_887713.1 identified by match to protein family HMM PF07336 YP_887714.1 identified by match to protein family HMM PF00107 YP_887715.1 identified by match to protein family HMM PF00440 YP_887716.1 identified by match to protein family HMM PF03473 YP_887717.1 identified by match to protein family HMM PF01522 YP_887719.1 identified by match to protein family HMM PF01047; match to protein family HMM PF01978 YP_887720.1 identified by match to protein family HMM PF00892 YP_887724.1 identified by match to protein family HMM PF00106 YP_887725.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_887726.1 identified by match to protein family HMM PF00899; match to protein family HMM PF02826 YP_887727.1 identified by match to protein family HMM PF01614 YP_887728.1 identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027 YP_887729.1 identified by match to protein family HMM PF00440 YP_887730.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_887731.1 identified by match to protein family HMM PF00753 YP_887733.1 identified by match to protein family HMM PF01757 YP_887735.1 identified by match to protein family HMM PF05199 YP_887736.1 identified by similarity to GP:2935133; match to protein family HMM PF01609 YP_887737.1 identified by match to protein family HMM PF00732 YP_887738.1 identified by match to protein family HMM PF00254 YP_887741.1 identified by match to protein family HMM PF00756; match to protein family HMM PF01476 YP_887744.1 identified by similarity to SP:P16095; match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720 YP_887746.1 identified by match to protein family HMM PF00497 YP_887748.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_887749.1 identified by match to protein family HMM PF00296 YP_887751.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_887752.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_887754.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493 YP_887755.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_887756.1 identified by match to protein family HMM PF00440 YP_887759.1 identified by match to protein family HMM PF01479 YP_887761.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF07992 YP_887763.1 identified by match to protein family HMM PF06738 YP_887764.1 identified by match to protein family HMM PF01475 YP_887765.1 identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198 YP_887766.1 identified by match to protein family HMM PF00881 YP_887768.1 identified by match to protein family HMM PF00107 YP_887769.1 activates fatty acids by binding to coenzyme A YP_887771.1 identified by match to protein family HMM PF00501 YP_887773.1 identified by match to protein family HMM PF00440 YP_887774.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_887776.1 identified by match to protein family HMM PF07958 YP_887777.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01091 YP_887778.1 identified by match to protein family HMM PF02517 YP_887780.1 identified by match to protein family HMM PF01435 YP_887781.1 identified by match to protein family HMM PF00877 YP_887782.1 identified by match to protein family HMM PF03070 YP_887783.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein YP_887784.1 identified by match to protein family HMM PF04655 YP_887785.1 identified by match to protein family HMM PF01188 YP_887787.1 identified by match to protein family HMM PF03473 YP_887788.1 identified by match to protein family HMM PF07883 YP_887789.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_887790.1 identified by similarity to SP:P26901; match to protein family HMM PF00199 YP_887791.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_887792.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_887793.1 identified by match to protein family HMM PF00657 YP_887794.1 identified by match to protein family HMM PF01757 YP_887796.1 identified by match to protein family HMM PF01663 YP_887797.1 identified by match to protein family HMM PF05305 YP_887799.1 identified by match to protein family HMM PF05423 YP_887800.1 identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833 YP_887804.1 identified by match to protein family HMM PF03883 YP_887809.1 identified by match to protein family HMM PF01425 YP_887810.1 identified by match to protein family HMM PF00282; match to protein family HMM PF01212 YP_887811.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis YP_887812.1 identified by match to protein family HMM PF00561 YP_887814.1 identified by match to protein family HMM PF01494 YP_887815.1 identified by similarity to GB:CAD18826.1 YP_887816.1 identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200 YP_887819.1 identified by match to protein family HMM PF00106 YP_887820.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_887822.1 identified by match to protein family HMM PF03060 YP_887823.1 identified by match to protein family HMM PF00440 YP_887824.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_887828.1 identified by match to protein family HMM PF01381 YP_887829.1 identified by match to protein family HMM TIGR01926 YP_887830.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_887831.1 identified by match to protein family HMM PF04116 YP_887832.1 identified by match to protein family HMM PF03734 YP_887835.1 identified by match to protein family HMM PF00854; match to protein family HMM TIGR00924 YP_887836.1 identified by match to protein family HMM PF00291 YP_887837.1 identified by match to protein family HMM PF03061 YP_887838.1 identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230 YP_887839.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_887841.1 identified by match to protein family HMM PF02353 YP_887845.1 identified by match to protein family HMM PF02683 YP_887847.1 identified by match to protein family HMM PF00296 YP_887850.1 identified by match to protein family HMM PF00497; match to protein family HMM TIGR01409; match to protein family HMM TIGR02995 YP_887851.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; match to protein family HMM TIGR03004 YP_887852.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; match to protein family HMM TIGR03003 YP_887853.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR03005 YP_887854.1 identified by match to protein family HMM PF00067 YP_887856.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position YP_887857.1 identified by match to protein family HMM PF00296 YP_887858.1 identified by match to protein family HMM PF00795 YP_887859.1 identified by match to protein family HMM PF02133 YP_887860.1 identified by match to protein family HMM PF00324 YP_887861.1 identified by match to protein family HMM PF01738 YP_887864.1 identified by match to protein family HMM PF00120 YP_887865.1 identified by match to protein family HMM PF02627 YP_887866.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_887867.1 identified by match to protein family HMM PF00210; match to protein family HMM TIGR00754 YP_887870.1 identified by match to protein family HMM PF04324 YP_887871.1 identified by match to protein family HMM PF00378 YP_887873.1 identified by match to protein family HMM PF05976 YP_887874.1 identified by match to protein family HMM PF03061 YP_887875.1 identified by match to protein family HMM PF00440 YP_887877.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_887878.1 identified by match to protein family HMM PF00383 YP_887879.1 identified by match to protein family HMM PF00128 YP_887881.1 identified by match to protein family HMM PF00211; match to protein family HMM PF00672 YP_887882.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00924 YP_887883.1 identified by match to protein family HMM PF00756 YP_887884.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_887885.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07726; match to protein family HMM PF07728; match to protein family HMM TIGR00763 YP_887886.1 identified by match to protein family HMM PF00296 YP_887887.1 identified by match to protein family HMM PF03176 YP_887888.1 identified by match to protein family HMM PF05423 YP_887889.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_887890.1 identified by match to protein family HMM PF00324 YP_887896.1 identified by match to protein family HMM PF01904 YP_887897.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_887901.1 identified by match to protein family HMM PF00532 YP_887903.1 identified by match to protein family HMM PF00532 YP_887904.1 identified by match to protein family HMM PF02653 YP_887905.1 identified by match to protein family HMM PF00005 YP_887906.1 identified by match to protein family HMM PF00107 YP_887907.1 identified by match to protein family HMM PF00106 YP_887908.1 identified by match to protein family HMM PF00107 YP_887909.1 identified by match to protein family HMM PF04198 YP_887910.1 identified by match to protein family HMM PF00106 YP_887911.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_887913.1 identified by match to protein family HMM PF00296 YP_887914.1 identified by match to protein family HMM PF03894 YP_887915.1 identified by match to protein family HMM PF02517 YP_887916.1 identified by match to protein family HMM PF07336 YP_887918.1 identified by match to protein family HMM PF00107; match to protein family HMM TIGR02822 YP_887919.1 identified by match to protein family HMM PF04226 YP_887921.1 identified by match to protein family HMM PF07174 YP_887923.1 identified by match to protein family HMM PF00296 YP_887924.1 identified by similarity to GB:AAC46302.1; match to protein family HMM PF00070; match to protein family HMM PF07992 YP_887926.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00101 YP_887928.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_887929.1 identified by match to protein family HMM PF00699; match to protein family HMM TIGR00192 YP_887930.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter YP_887931.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_887933.1 identified by match to protein family HMM PF03965 YP_887934.1 identified by match to protein family HMM PF01435; match to protein family HMM PF05569 YP_887935.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_887936.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_887937.1 identified by match to protein family HMM PF00005 YP_887938.1 identified by match to protein family HMM PF00528 YP_887939.1 identified by match to protein family HMM PF01547 YP_887940.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_887941.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595 YP_887943.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA YP_887945.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_887948.1 identified by match to protein family HMM PF02577 YP_887949.1 identified by match to protein family HMM PF00376 YP_887950.1 identified by match to protein family HMM PF00498 YP_887951.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_887952.1 identified by match to protein family HMM PF05949 YP_887953.1 identified by match to protein family HMM PF06947 YP_887954.1 identified by match to protein family HMM PF05949 YP_887956.1 identified by match to protein family HMM PF01066 YP_887957.1 SecA2; functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond to SecA2; which is non-essential and seems to play a role in secretion of a subset of proteins YP_887958.1 identified by match to protein family HMM PF00005; match to protein family HMM PF06472 YP_887959.1 identified by match to protein family HMM PF00005; match to protein family HMM PF06472 YP_887960.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01266 YP_887962.1 identified by match to protein family HMM PF00440 YP_887965.1 identified by match to protein family HMM PF01453; match to protein family HMM PF01476 YP_887966.1 identified by match to protein family HMM PF01266 YP_887967.1 identified by match to protein family HMM PF00999 YP_887968.1 identified by match to protein family HMM PF02080 YP_887970.1 identified by match to protein family HMM PF00135 YP_887971.1 identified by match to protein family HMM PF08028 YP_887973.1 identified by similarity to SP:Q57225; match to protein family HMM PF00893 YP_887974.1 identified by similarity to SP:Q57225; match to protein family HMM PF00893 YP_887975.1 identified by match to protein family HMM PF07690 YP_887976.1 identified by match to protein family HMM PF02446; match to protein family HMM TIGR00217 YP_887979.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_887980.1 identified by match to protein family HMM PF00069 YP_887982.1 identified by match to protein family HMM PF00293 YP_887984.1 identified by match to protein family HMM PF00657 YP_887985.1 identified by match to protein family HMM PF05305 YP_887987.1 identified by match to protein family HMM PF02136 YP_887990.1 activates fatty acids by binding to coenzyme A; in Mycobacterium may be involved in virulence YP_887992.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813 YP_887993.1 identified by match to protein family HMM PF01087; match to protein family HMM PF02744; match to protein family HMM TIGR00209 YP_887994.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism YP_887995.1 identified by match to protein family HMM PF00067 YP_887996.1 identified by match to protein family HMM PF00501 YP_887998.1 identified by similarity to GP:150004; match to protein family HMM PF07929 YP_887999.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_888002.1 identified by match to protein family HMM TIGR01413 YP_888005.1 identified by match to protein family HMM PF01370 YP_888006.1 identified by match to protein family HMM PF07690 YP_888007.1 identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346 YP_888009.1 identified by match to protein family HMM PF00199 YP_888010.1 identified by match to protein family HMM PF01292 YP_888016.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733; match to protein family HMM TIGR01746 YP_888018.1 identified by match to protein family HMM PF06803 YP_888019.1 identified by match to protein family HMM PF01699 YP_888021.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02109 YP_888022.1 identified by match to protein family HMM PF05402 YP_888023.1 Required in the synthesis of PPQ, but its exact function is unknown YP_888024.1 possibly involved in transport of pyrroloquinoline quinone transport YP_888025.1 identified by match to protein family HMM TIGR02107 YP_888026.1 identified by match to protein family HMM PF01011; match to protein family HMM TIGR03075 YP_888029.1 identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198 YP_888030.1 identified by match to protein family HMM PF04397 YP_888031.1 identified by match to protein family HMM PF01244 YP_888034.1 identified by match to protein family HMM PF01925 YP_888036.1 identified by match to protein family HMM PF01925 YP_888037.1 synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_888038.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_888039.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_888040.1 identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281 YP_888041.1 identified by match to protein family HMM PF02616 YP_888042.1 identified by match to protein family HMM PF01656 YP_888043.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_888044.1 identified by match to protein family HMM PF00293 YP_888045.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_888047.1 catalyzes the phosphorylation of NAD to NADP YP_888048.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478 YP_888050.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460 YP_888052.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_888053.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair YP_888055.1 identified by match to protein family HMM PF02861 YP_888056.1 identified by match to protein family HMM PF00005 YP_888057.1 identified by match to protein family HMM PF01061; match to protein family HMM TIGR00025 YP_888058.1 identified by match to protein family HMM PF00440 YP_888059.1 identified by match to protein family HMM PF03966 YP_888061.1 activates fatty acids by binding to coenzyme A YP_888062.1 identified by match to protein family HMM PF00005 YP_888063.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_888064.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_888065.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes YP_888066.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_888067.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_888068.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_888069.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_888070.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_888071.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_888072.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_888073.1 identified by match to protein family HMM PF00211 YP_888075.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_888076.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_888077.1 identified by match to protein family HMM PF01614 YP_888078.1 identified by match to protein family HMM PF00294 YP_888080.1 identified by match to protein family HMM PF07908; match to protein family HMM PF07969 YP_888081.1 identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182 YP_888082.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791 YP_888083.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032 YP_888084.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_888085.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_888086.1 identified by match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168 YP_888089.1 catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_888090.1 identified by match to protein family HMM PF00756 YP_888095.1 identified by match to protein family HMM PF07721 YP_888099.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_888100.1 identified by match to protein family HMM PF00440 YP_888102.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_888103.1 identified by match to protein family HMM PF00753 YP_888104.1 identified by match to protein family HMM PF00582 YP_888105.1 identified by match to protein family HMM PF02551 YP_888107.1 identified by match to protein family HMM PF07690 YP_888108.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_888109.1 identified by match to protein family HMM PF04167 YP_888111.1 identified by match to protein family HMM PF04960 YP_888113.1 identified by match to protein family HMM PF00324 YP_888114.1 identified by match to protein family HMM PF00392; match to protein family HMM PF02082; match to protein family HMM PF07729 YP_888115.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_888116.1 identified by match to protein family HMM PF06545 YP_888117.1 identified by match to protein family HMM PF00106 YP_888119.1 identified by match to protein family HMM PF00120 YP_888120.1 identified by match to protein family HMM PF00120 YP_888121.1 identified by match to protein family HMM PF07859 YP_888122.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_888124.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_888125.1 identified by match to protein family HMM PF00440 YP_888130.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_888131.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_888132.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494 YP_888134.1 identified by match to protein family HMM PF01796 YP_888136.1 identified by match to protein family HMM PF02594 YP_888137.1 identified by match to protein family HMM PF01636 YP_888138.1 catalyzes the formation of phenylacetaldehyde from 2-phenylethylamine YP_888139.1 identified by match to protein family HMM PF00135 YP_888142.1 identified by similarity to GB:AAB82564.1; match to protein family HMM PF00296 YP_888143.1 identified by match to protein family HMM TIGR01728 YP_888144.1 identified by match to protein family HMM PF00005 YP_888145.1 identified by match to protein family HMM PF00528 YP_888147.1 identified by match to protein family HMM PF00486; match to protein family HMM PF00561 YP_888150.1 identified by match to protein family HMM PF00535 YP_888151.1 identified by match to protein family HMM PF00795; match to protein family HMM TIGR00546 YP_888152.1 identified by match to protein family HMM PF07969 YP_888153.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein YP_888154.1 identified by match to protein family HMM PF01243 YP_888155.1 with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism YP_888158.1 identified by match to protein family HMM PF01882; match to protein family HMM PF07726; match to protein family HMM PF07728 YP_888161.1 identified by match to protein family HMM PF02668 YP_888162.1 identified by match to protein family HMM PF03460; match to protein family HMM TIGR02435 YP_888163.1 catalyzes the interconversion of precorrin-8X and hydrogenobyrinate YP_888164.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466; match to protein family HMM TIGR01467 YP_888165.1 identified by match to protein family HMM PF00440 YP_888166.1 identified by match to protein family HMM PF01636 YP_888167.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6 YP_888168.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465 YP_888169.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469 YP_888170.1 identified by match to protein family HMM PF00106 YP_888171.1 identified by match to protein family HMM PF01243 YP_888172.1 identified by match to protein family HMM PF00557 YP_888173.1 identified by match to protein family HMM PF00903 YP_888174.1 identified by match to protein family HMM PF01367; match to protein family HMM PF02739 YP_888176.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM PF08148 YP_888177.1 identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945 YP_888178.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_888180.1 identified by match to protein family HMM PF03136; match to protein family HMM PF03316 YP_888181.1 identified by match to protein family HMM PF00561 YP_888184.1 identified by match to protein family HMM PF00227 YP_888185.1 identified by match to protein family HMM PF00227 YP_888186.1 identified by match to protein family HMM PF05639 YP_888187.1 identified by match to protein family HMM PF03136; match to protein family HMM PF03316 YP_888188.1 identified by match to protein family HMM PF05721; match to protein family HMM TIGR02408 YP_888189.1 N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid YP_888190.1 catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde YP_888191.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR02406 YP_888192.1 identified by match to protein family HMM PF00004 YP_888195.1 identified by match to protein family HMM PF04456 YP_888200.1 identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026 YP_888203.1 identified by match to protein family HMM PF00144 YP_888204.1 identified by match to protein family HMM PF00107 YP_888212.1 identified by match to protein family HMM PF04978 YP_888213.1 identified by match to protein family HMM PF00668 YP_888214.1 identified by match to protein family HMM PF00753 YP_888215.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_888216.1 identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072 YP_888217.1 identified by match to protein family HMM PF00374 YP_888218.1 identified by match to protein family HMM PF01058 YP_888219.1 identified by match to protein family HMM PF00175 YP_888220.1 identified by match to protein family HMM PF00037 YP_888221.1 identified by match to protein family HMM PF00011 YP_888222.1 identified by match to protein family HMM PF00391; match to protein family HMM PF01326; match to protein family HMM PF02896 YP_888223.1 identified by match to protein family HMM PF03007 YP_888225.1 identified by match to protein family HMM PF00582 YP_888228.1 identified by match to protein family HMM PF00582 YP_888229.1 identified by match to protein family HMM PF00582 YP_888230.1 identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730 YP_888233.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_888234.1 identified by match to protein family HMM PF00582 YP_888236.1 identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946 YP_888237.1 identified by match to protein family HMM PF00294 YP_888239.1 identified by match to protein family HMM PF00582 YP_888243.1 identified by match to protein family HMM PF03632; match to protein family HMM PF03633; match to protein family HMM PF03636 YP_888246.1 identified by match to protein family HMM PF01844; match to protein family HMM PF02720 YP_888248.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_888249.1 identified by match to protein family HMM PF00440 YP_888250.1 identified by match to protein family HMM PF00440 YP_888251.1 identified by match to protein family HMM PF01070 YP_888253.1 catalyzes the formation of acetate from pyruvate YP_888256.1 identified by match to protein family HMM PF02082; match to protein family HMM PF08220 YP_888260.1 identified by match to protein family HMM PF01425 YP_888261.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_888262.1 identified by match to protein family HMM PF02538 YP_888263.1 identified by match to protein family HMM PF07905 YP_888264.1 identified by match to protein family HMM PF00440 YP_888265.1 identified by match to protein family HMM PF00296 YP_888266.1 identified by match to protein family HMM PF00144 YP_888267.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_888268.1 identified by match to protein family HMM PF02515 YP_888269.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_888270.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_888271.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_888272.1 identified by match to protein family HMM PF00501 YP_888273.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01266 YP_888274.1 identified by match to protein family HMM PF01037 YP_888275.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_888276.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_888277.1 identified by match to protein family HMM PF04199 YP_888278.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_888279.1 identified by match to protein family HMM PF01177 YP_888280.1 identified by match to protein family HMM PF00106 YP_888281.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01879 YP_888282.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position YP_888284.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_888285.1 identified by match to protein family HMM PF00532 YP_888286.1 identified by match to protein family HMM PF00005 YP_888287.1 identified by match to protein family HMM PF02653 YP_888288.1 identified by match to protein family HMM PF00107 YP_888290.1 identified by match to protein family HMM PF00106 YP_888292.1 identified by match to protein family HMM PF02954 YP_888293.1 identified by match to protein family HMM PF03171 YP_888294.1 identified by match to protein family HMM PF03171 YP_888295.1 identified by match to protein family HMM PF00111 YP_888296.1 identified by match to protein family HMM PF00903 YP_888297.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_888298.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position YP_888299.1 identified by match to protein family HMM PF00296 YP_888300.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01879 YP_888304.1 identified by match to protein family HMM PF01909 YP_888305.1 identified by match to protein family HMM PF00501 YP_888306.1 identified by match to protein family HMM PF00378 YP_888308.1 identified by match to protein family HMM PF00440 YP_888309.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992 YP_888310.1 identified by match to protein family HMM PF00440 YP_888311.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_888313.1 identified by match to protein family HMM PF00107 YP_888315.1 identified by match to protein family HMM PF07336 YP_888316.1 identified by match to protein family HMM PF04224 YP_888318.1 identified by match to protein family HMM PF00107 YP_888319.1 identified by match to protein family HMM PF00440 YP_888320.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368; match to protein family HMM PF07993 YP_888322.1 identified by match to protein family HMM PF00501 YP_888324.1 identified by match to protein family HMM PF00171 YP_888325.1 identified by match to protein family HMM PF00107 YP_888326.1 identified by match to protein family HMM PF00881 YP_888327.1 identified by match to protein family HMM PF00775; match to protein family HMM PF04444 YP_888328.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_888329.1 identified by match to protein family HMM PF04909 YP_888330.1 identified by match to protein family HMM PF01590 YP_888331.1 identified by match to protein family HMM PF02426 YP_888332.1 identified by match to protein family HMM PF02515 YP_888333.1 identified by match to protein family HMM PF00753 YP_888335.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_888339.1 identified by match to protein family HMM PF00196 YP_888341.1 identified by match to protein family HMM PF00106 YP_888343.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_888344.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_888345.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01493 YP_888346.1 identified by match to protein family HMM PF01042 YP_888347.1 identified by match to protein family HMM PF01425 YP_888348.1 identified by match to protein family HMM PF04909 YP_888349.1 identified by match to protein family HMM PF00107 YP_888350.1 identified by match to protein family HMM PF00501 YP_888353.1 identified by match to protein family HMM PF00107 YP_888356.1 identified by similarity to GB:CAD18826.1 YP_888357.1 identified by match to protein family HMM PF00106 YP_888358.1 identified by match to protein family HMM PF02629 YP_888359.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_888360.1 identified by match to protein family HMM PF00378 YP_888361.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_888362.1 identified by match to protein family HMM PF00561 YP_888363.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_888366.1 identified by match to protein family HMM PF02770; match to protein family HMM PF08028 YP_888369.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_888370.1 identified by match to protein family HMM PF01527 YP_888371.1 identified by match to protein family HMM PF00665 YP_888372.1 identified by match to protein family HMM PF01614 YP_888374.1 identified by match to protein family HMM PF00296 YP_888375.1 identified by match to protein family HMM PF00248 YP_888376.1 identified by match to protein family HMM PF00441; match to protein family HMM PF08028 YP_888379.1 identified by match to protein family HMM PF08028 YP_888380.1 identified by match to protein family HMM PF00005 YP_888381.1 identified by match to protein family HMM PF00528 YP_888382.1 identified by match to protein family HMM PF00528 YP_888383.1 identified by match to protein family HMM PF00496 YP_888385.1 identified by match to protein family HMM PF00296 YP_888386.1 identified by match to protein family HMM PF07690 YP_888387.1 identified by match to protein family HMM PF00665 YP_888388.1 identified by match to protein family HMM PF01527 YP_888390.1 identified by similarity to SP:P07002; match to protein family HMM PF02233 YP_888391.1 forms a tetramer composed of 2 subunit alphas and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm YP_888392.1 identified by match to protein family HMM PF00725; match to protein family HMM PF02737 YP_888393.1 identified by match to protein family HMM PF02515 YP_888394.1 identified by match to protein family HMM PF00501 YP_888395.1 identified by match to protein family HMM PF00441; match to protein family HMM PF08028 YP_888396.1 identified by match to protein family HMM PF00378 YP_888397.1 identified by match to protein family HMM PF00725; match to protein family HMM PF02737 YP_888398.1 identified by match to protein family HMM PF00725; match to protein family HMM PF02737 YP_888399.1 identified by match to protein family HMM PF00106 YP_888400.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_888401.1 identified by match to protein family HMM PF00378 YP_888402.1 identified by match to protein family HMM PF02515 YP_888403.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_888404.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_888405.1 identified by match to protein family HMM PF03446 YP_888407.1 identified by match to protein family HMM PF00106 YP_888408.1 identified by match to protein family HMM PF00857 YP_888409.1 identified by match to protein family HMM PF01609 YP_888413.1 identified by match to protein family HMM PF01522 YP_888415.1 identified by match to protein family HMM PF00665 YP_888416.1 identified by match to protein family HMM PF03641 YP_888419.1 identified by match to protein family HMM PF00795 YP_888420.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_888423.1 identified by match to protein family HMM PF07045 YP_888424.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_888425.1 identified by match to protein family HMM PF07883 YP_888426.1 identified by match to protein family HMM PF00107 YP_888427.1 identified by match to protein family HMM PF07690 YP_888428.1 identified by match to protein family HMM PF07859 YP_888429.1 catalyzes the formation of acetyl-CoA from acetalaldehyde YP_888430.1 catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate YP_888432.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_888434.1 identified by match to protein family HMM PF00872 YP_888435.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_888436.1 identified by match to protein family HMM PF00589 YP_888439.1 identified by similarity to SP:P35883; match to protein family HMM PF00872 YP_888442.1 identified by match to protein family HMM PF06187 YP_888443.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_888444.1 identified by match to protein family HMM PF00378 YP_888445.1 identified by match to protein family HMM PF00171 YP_888446.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_888447.1 identified by match to protein family HMM PF00107 YP_888448.1 identified by match to protein family HMM PF01144 YP_888449.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_888450.1 identified by match to protein family HMM PF00005 YP_888451.1 identified by match to protein family HMM PF02653 YP_888452.1 identified by match to protein family HMM PF00532 YP_888453.1 identified by match to protein family HMM PF01575 YP_888454.1 identified by match to protein family HMM PF01614 YP_888455.1 identified by match to protein family HMM PF01022 YP_888459.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_888460.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_888461.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879 YP_888462.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_888464.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity YP_888465.1 identified by match to protein family HMM PF01908 YP_888466.1 identified by match to protein family HMM PF06742; match to protein family HMM PF06863 YP_888467.1 identified by match to protein family HMM PF00106 YP_888468.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_888469.1 identified by match to protein family HMM PF00459 YP_888472.1 identified by match to protein family HMM PF00300 YP_888473.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters UDP disphosphate which reduces the pool of lipid carrier available to the cell YP_888477.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_888478.1 identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481 YP_888479.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687 YP_888481.1 identified by match to protein family HMM PF00082 YP_888483.1 identified by match to protein family HMM PF00196; match to protein family HMM PF07721 YP_888484.1 identified by match to protein family HMM PF00582 YP_888485.1 identified by match to protein family HMM PF01970 YP_888487.1 identified by match to protein family HMM PF03401 YP_888488.1 identified by match to protein family HMM PF02518 YP_888489.1 identified by match to protein family HMM PF00072 YP_888490.1 identified by match to protein family HMM PF00067 YP_888492.1 identified by match to protein family HMM PF00156 YP_888494.1 identified by match to protein family HMM PF05103 YP_888496.1 identified by match to protein family HMM PF04472 YP_888497.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_888498.1 identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726 YP_888500.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_888502.1 identified by match to protein family HMM PF03799 YP_888503.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_888504.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_888505.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614 YP_888506.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_888507.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_888508.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143 YP_888509.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_888510.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_888512.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_888513.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_888517.1 identified by match to protein family HMM PF00348 YP_888520.1 identified by match to protein family HMM PF00069; match to protein family HMM PF01163 YP_888521.1 identified by match to protein family HMM PF01474; match to protein family HMM TIGR01358 YP_888525.1 identified by match to protein family HMM PF01553 YP_888527.1 identified by match to protein family HMM PF02374 YP_888528.1 identified by match to protein family HMM PF03364 YP_888530.1 identified by match to protein family HMM PF00501 YP_888531.1 identified by match to protein family HMM PF00534 YP_888533.1 identified by match to protein family HMM PF00877 YP_888535.1 contains 3'-5'exonuclease domain YP_888536.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_888537.1 identified by match to protein family HMM PF00510 YP_888538.1 identified by match to protein family HMM PF00034 YP_888539.1 identified by match to protein family HMM PF00355 YP_888540.1 identified by match to protein family HMM PF00033 YP_888545.1 identified by match to protein family HMM PF00116 YP_888546.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_888547.1 identified by match to protein family HMM PF00294 YP_888549.1 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049 YP_888551.1 identified by match to protein family HMM PF02283 YP_888552.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole YP_888553.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole YP_888554.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_888555.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_888556.1 identified by match to protein family HMM PF00211 YP_888557.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_888558.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00561 YP_888560.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR02927 YP_888561.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM TIGR01777 YP_888562.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system protein H YP_888563.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_888565.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_888566.1 identified by match to protein family HMM PF06271 YP_888567.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_888568.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); defense mechanism against a harmful effect of D-tyrosine YP_888569.1 identified by match to protein family HMM PF07681 YP_888570.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme YP_888571.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_888572.1 identified by match to protein family HMM PF00561 YP_888573.1 identified by match to protein family HMM PF00561 YP_888574.1 identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946 YP_888575.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_888576.1 identified by match to protein family HMM PF00378 YP_888577.1 identified by match to protein family HMM PF00440 YP_888578.1 activates fatty acids by binding to coenzyme A YP_888579.1 identified by match to protein family HMM PF01928; match to protein family HMM PF05235 YP_888580.1 identified by match to protein family HMM PF03848; match to protein family HMM PF05724; match to protein family HMM PF07992 YP_888581.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_888582.1 identified by match to protein family HMM PF00300 YP_888583.1 identified by match to protein family HMM PF02591 YP_888584.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486 YP_888585.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_888586.1 identified by match to protein family HMM PF01451 YP_888588.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group YP_888589.1 identified by match to protein family HMM PF00903 YP_888591.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_888592.1 identified by match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589 YP_888595.1 identified by match to protein family HMM PF00578 YP_888598.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_888601.1 carries the fatty acid chain in fatty acid biosynthesis YP_888602.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_888603.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_888604.1 identified by match to protein family HMM PF01039 YP_888605.1 identified by match to protein family HMM PF00106 YP_888606.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_888607.1 identified by match to protein family HMM PF01266 YP_888608.1 identified by match to protein family HMM PF00440 YP_888609.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_888610.1 involved in the biosynthesis of phosphatidylinositol mannosides (PIMs); the enzyme from Mycobacterium tuberculosis can phosphorylate a variety of amphipathic lipids YP_888612.1 identified by match to protein family HMM PF00144 YP_888614.1 identified by match to protein family HMM PF00196; match to protein family HMM PF07719 YP_888615.1 identified by match to protein family HMM PF00107 YP_888616.1 identified by match to protein family HMM PF00753 YP_888623.1 thiamine-pyrophosphate requiring enzyme YP_888625.1 identified by match to protein family HMM PF01113 YP_888626.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_888629.1 identified by match to protein family HMM PF00496 YP_888630.1 identified by match to protein family HMM PF00528 YP_888631.1 identified by match to protein family HMM PF00528 YP_888632.1 identified by match to protein family HMM PF00005 YP_888633.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_888637.1 identified by match to protein family HMM PF00582 YP_888638.1 identified by match to protein family HMM PF07366 YP_888641.1 identified by match to protein family HMM PF00069 YP_888642.1 identified by match to protein family HMM PF03069 YP_888644.1 identified by match to protein family HMM TIGR02605 YP_888645.1 identified by match to protein family HMM PF07905 YP_888646.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_888647.1 identified by match to protein family HMM PF00355 YP_888648.1 identified by match to protein family HMM PF01522 YP_888649.1 identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230 YP_888650.1 identified by match to protein family HMM PF00106 YP_888651.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_888652.1 identified by match to protein family HMM PF00324 YP_888653.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_888654.1 identified by match to protein family HMM PF00857 YP_888655.1 identified by match to protein family HMM PF00005; match to protein family HMM PF06472 YP_888656.1 identified by match to protein family HMM PF03069 YP_888657.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_888658.1 identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833 YP_888659.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF03793 YP_888660.1 identified by match to protein family HMM PF00496 YP_888661.1 identified by match to protein family HMM PF00528 YP_888662.1 identified by match to protein family HMM PF00528 YP_888663.1 identified by match to protein family HMM PF00005 YP_888665.1 identified by match to protein family HMM PF08028 YP_888667.1 identified by match to protein family HMM PF01979 YP_888669.1 identified by match to protein family HMM PF00126 YP_888670.1 identified by match to protein family HMM PF05901 YP_888671.1 identified by match to protein family HMM PF00857 YP_888672.1 identified by match to protein family HMM PF00376 YP_888673.1 identified by match to protein family HMM PF00296 YP_888675.1 identified by match to protein family HMM PF00107 YP_888676.1 identified by match to protein family HMM PF00702 YP_888677.1 identified by similarity to GP:150004; match to protein family HMM PF07929 YP_888678.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_888680.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_888683.1 identified by match to protein family HMM PF04224 YP_888686.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00970 YP_888687.1 identified by match to protein family HMM PF00174 YP_888690.1 catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate YP_888692.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress YP_888693.1 identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357 YP_888694.1 identified by match to protein family HMM PF00106 YP_888695.1 identified by match to protein family HMM PF07883 YP_888697.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF07992 YP_888699.1 identified by match to protein family HMM PF01042 YP_888701.1 identified by match to protein family HMM PF07690 YP_888702.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368 YP_888705.1 identified by match to protein family HMM PF00196; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_888706.1 identified by match to protein family HMM PF00196 YP_888708.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_888709.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_888711.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_888712.1 identified by match to protein family HMM PF00115; match to protein family HMM TIGR02891 YP_888714.1 identified by match to protein family HMM PF00583 YP_888715.1 identified by match to protein family HMM PF00106 YP_888716.1 identified by match to protein family HMM PF07883 YP_888718.1 identified by match to protein family HMM PF00107 YP_888722.1 identified by match to protein family HMM PF02452 YP_888723.1 identified by match to protein family HMM PF00440 YP_888727.1 identified by similarity to SP:O50584; match to protein family HMM PF00282; match to protein family HMM PF01212 YP_888728.1 identified by match to protein family HMM PF00144 YP_888730.1 identified by match to protein family HMM PF01037 YP_888731.1 identified by match to protein family HMM PF02133 YP_888732.1 identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230 YP_888733.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_888734.1 identified by match to protein family HMM PF00474 YP_888735.1 identified by match to protein family HMM TIGR02206 YP_888737.1 identified by match to protein family HMM PF01523 YP_888738.1 identified by match to protein family HMM PF01083; match to protein family HMM PF02230 YP_888739.1 identified by match to protein family HMM PF00528 YP_888740.1 identified by match to protein family HMM PF00528 YP_888741.1 identified by match to protein family HMM PF01547 YP_888742.1 identified by match to protein family HMM PF02361 YP_888743.1 identified by match to protein family HMM PF00005 YP_888744.1 identified by match to protein family HMM PF01047 YP_888745.1 identified by match to protein family HMM PF07690 YP_888746.1 identified by match to protein family HMM PF01988 YP_888747.1 identified by match to protein family HMM PF00441; match to protein family HMM PF01756; match to protein family HMM PF02770 YP_888750.1 identified by match to protein family HMM PF00561 YP_888754.1 synthesizes RNA primers at the replication forks YP_888755.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_888756.1 identified by match to protein family HMM PF04536 YP_888757.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_888758.1 identified by match to protein family HMM PF01022 YP_888759.1 identified by match to protein family HMM PF01475 YP_888760.1 identified by match to protein family HMM PF00293 YP_888762.1 catalyzes the formation of UDP pyrophosphate from isopentenyl pyrophosphate YP_888763.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_888764.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_888765.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_888767.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_888768.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043 YP_888769.1 identified by match to protein family HMM PF00013; match to protein family HMM PF02562 YP_888773.1 identified by match to protein family HMM PF00375 YP_888775.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_888776.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_888777.1 negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_888780.1 identified by match to protein family HMM PF03621 YP_888782.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_888783.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_888784.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370 YP_888785.1 identified by match to protein family HMM PF00109; match to protein family HMM PF02801 YP_888786.1 identified by match to protein family HMM PF00975 YP_888787.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_888788.1 identified by match to protein family HMM PF00501 YP_888789.1 identified by match to protein family HMM PF00440 YP_888792.1 identified by match to protein family HMM PF00005 YP_888793.1 identified by match to protein family HMM TIGR01409 YP_888794.1 identified by match to protein family HMM PF00528 YP_888795.1 identified by similarity to GB:CAD18826.1 YP_888796.1 catalyzes conversion of chorismate to salicylate, in mycobactin siderophore construction; requires Mg(2+) for function YP_888797.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_888799.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460 YP_888800.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite YP_888801.1 identified by match to protein family HMM PF01903 YP_888802.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM TIGR00968 YP_888803.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140 YP_888804.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139 YP_888805.1 identified by match to protein family HMM TIGR00971 YP_888807.1 identified by match to protein family HMM PF00723 YP_888810.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979 YP_888812.1 identified by match to protein family HMM PF00583 YP_888813.1 identified by match to protein family HMM PF00005 YP_888814.1 identified by match to protein family HMM PF00528 YP_888815.1 identified by match to protein family HMM PF00528 YP_888816.1 identified by match to protein family HMM PF00496 YP_888817.1 identified by match to protein family HMM PF05175; match to protein family HMM PF05724 YP_888818.1 identified by match to protein family HMM PF08028 YP_888819.1 identified by match to protein family HMM PF00583 YP_888820.1 identified by match to protein family HMM PF00324 YP_888821.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_888823.1 identified by match to protein family HMM PF00296 YP_888824.1 identified by match to protein family HMM PF01590 YP_888827.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_888829.1 identified by match to protein family HMM PF00005 YP_888830.1 identified by match to protein family HMM PF00950; match to protein family HMM PF01032 YP_888831.1 identified by match to protein family HMM PF01497 YP_888832.1 identified by match to protein family HMM PF01497 YP_888834.1 identified by match to protein family HMM PF00571 YP_888835.1 identified by match to protein family HMM PF00248 YP_888836.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_888837.1 identified by match to protein family HMM PF01841 YP_888838.1 identified by similarity to GP:22294891; match to protein family HMM PF04168 YP_888839.1 identified by match to protein family HMM PF04169; match to protein family HMM PF04174 YP_888840.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_888841.1 identified by match to protein family HMM PF06144 YP_888842.1 identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360 YP_888843.1 identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426 YP_888845.1 identified by match to protein family HMM PF01145 YP_888846.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_888848.1 identified by match to protein family HMM PF00300 YP_888849.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090 YP_888850.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_888851.1 identified by match to protein family HMM PF05762 YP_888852.1 identified by match to protein family HMM PF07728 YP_888853.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_888854.1 identified by match to protein family HMM PF00294 YP_888856.1 identified by match to protein family HMM PF00005 YP_888857.1 identified by match to protein family HMM PF00528 YP_888861.1 identified by match to protein family HMM PF00441; match to protein family HMM PF08028 YP_888871.1 identified by match to protein family HMM PF00165 YP_888876.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_888877.1 identified by match to protein family HMM PF01177 YP_888878.1 identified by match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM PF07158 YP_888880.1 identified by match to protein family HMM PF02518 YP_888881.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_888882.1 identified by match to protein family HMM PF00857 YP_888883.1 identified by match to protein family HMM PF02146 YP_888884.1 identified by match to protein family HMM PF00067 YP_888885.1 identified by match to protein family HMM PF00440 YP_888886.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_888887.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_888888.1 involved in the peptidyltransferase reaction during translation YP_888889.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_888890.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_888891.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_888893.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_888895.1 identified by match to protein family HMM PF03435 YP_888896.1 identified by match to protein family HMM PF00326; match to protein family HMM PF05448 YP_888898.1 identified by match to protein family HMM PF00909 YP_888901.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_888903.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494 YP_888904.1 identified by match to protein family HMM PF06737 YP_888906.1 identified by match to protein family HMM PF06737 YP_888907.1 MobA; links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide; involved in molybdenum cofactor biosynthesis YP_888908.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin YP_888909.1 identified by match to protein family HMM PF01855 YP_888910.1 identified by match to protein family HMM PF00294 YP_888912.1 identified by match to protein family HMM PF05721 YP_888913.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_888914.1 identified by match to protein family HMM PF01261 YP_888915.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_888916.1 identified by match to protein family HMM PF01261 YP_888917.1 identified by match to protein family HMM PF00248 YP_888918.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06719 YP_888919.1 identified by match to protein family HMM PF00005 YP_888920.1 identified by match to protein family HMM PF02653 YP_888921.1 identified by match to protein family HMM PF00532 YP_888922.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_888923.1 identified by match to protein family HMM PF00294 YP_888925.1 identified by match to protein family HMM PF01791 YP_888926.1 identified by match to protein family HMM PF06845 YP_888927.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_888928.1 identified by match to protein family HMM PF01261 YP_888929.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_888930.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_888931.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01701 YP_888932.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth YP_888933.1 identified by match to protein family HMM PF00201; match to protein family HMM TIGR01426 YP_888934.1 binds and unfolds substrates as part of the ClpXP protease YP_888935.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_888936.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_888937.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_888941.1 identified by similarity to PIR:JC2091; match to protein family HMM PF00144 YP_888943.1 identified by match to protein family HMM PF00999 YP_888944.1 identified by match to protein family HMM PF01149; match to protein family HMM PF06831 YP_888945.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity YP_888946.1 identified by match to protein family HMM PF00248 YP_888947.1 identified by match to protein family HMM PF03171 YP_888948.1 identified by match to protein family HMM PF00383 YP_888949.1 identified by match to protein family HMM PF01323 YP_888950.1 identified by match to protein family HMM PF05305 YP_888951.1 identified by match to protein family HMM PF01433; match to protein family HMM TIGR02412 YP_888955.1 identified by match to protein family HMM PF01844 YP_888956.1 identified by match to protein family HMM PF01152 YP_888957.1 identified by match to protein family HMM PF00128 YP_888960.1 identified by match to protein family HMM PF05088 YP_888961.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_888962.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_888963.1 identified by match to protein family HMM PF05425 YP_888964.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA YP_888965.1 identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_888966.1 identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946 YP_888967.1 identified by match to protein family HMM PF00561 YP_888968.1 identified by match to protein family HMM PF05401 YP_888969.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_888970.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817 YP_888971.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_888972.1 identified by match to protein family HMM PF00676 YP_888973.1 identified by match to protein family HMM PF03328 YP_888974.1 identified by match to protein family HMM PF01575 YP_888975.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_888976.1 identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786 YP_888977.1 identified by match to protein family HMM PF01039 YP_888978.1 identified by match to protein family HMM PF00440 YP_888979.1 identified by match to protein family HMM PF00326; match to protein family HMM PF02129 YP_888981.1 identified by match to protein family HMM PF07690 YP_888982.1 identified by match to protein family HMM PF00106 YP_888983.1 identified by similarity to GB:BAC71887.1; match to protein family HMM PF05872 YP_888984.1 3'-5' exoribonuclease specific for small oligoribonuclotides YP_888986.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801 YP_888987.1 identified by match to protein family HMM PF00668 YP_888990.1 activates fatty acids by binding to coenzyme A YP_888991.1 identified by match to protein family HMM PF00535 YP_888999.1 identified by match to protein family HMM PF03033 YP_889000.1 identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833 YP_889001.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_889002.1 identified by match to protein family HMM PF05988 YP_889004.1 identified by match to protein family HMM PF03734 YP_889011.1 identified by match to protein family HMM PF00578 YP_889012.1 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367 YP_889013.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687 YP_889014.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_889015.1 identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801 YP_889018.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187 YP_889019.1 identified by match to protein family HMM PF01547 YP_889020.1 identified by match to protein family HMM PF00528 YP_889021.1 identified by match to protein family HMM PF00528 YP_889022.1 identified by match to protein family HMM PF00376 YP_889023.1 identified by match to protein family HMM PF07690 YP_889024.1 identified by match to protein family HMM PF06772 YP_889029.1 activates fatty acids by binding to coenzyme A YP_889030.1 identified by match to protein family HMM PF04909 YP_889031.1 identified by match to protein family HMM PF00501 YP_889032.1 identified by match to protein family HMM PF00378 YP_889034.1 identified by match to protein family HMM PF01796 YP_889035.1 identified by match to protein family HMM PF02803 YP_889036.1 identified by match to protein family HMM PF00440 YP_889037.1 identified by match to protein family HMM PF00067 YP_889042.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_889043.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_889044.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_889046.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_889047.1 identified by similarity to GP:150004; match to protein family HMM PF07929 YP_889048.1 identified by match to protein family HMM PF02470 YP_889049.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_889050.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_889051.1 identified by match to protein family HMM PF02405 YP_889052.1 identified by match to protein family HMM PF02405 YP_889054.1 identified by match to protein family HMM PF02515 YP_889055.1 identified by match to protein family HMM PF00171 YP_889056.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_889057.1 identified by match to protein family HMM PF00106 YP_889059.1 identified by match to protein family HMM PF00067 YP_889061.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_889062.1 identified by match to protein family HMM PF00441; match to protein family HMM PF08028 YP_889063.1 identified by match to protein family HMM PF04909 YP_889064.1 identified by match to protein family HMM PF04909 YP_889065.1 identified by match to protein family HMM PF00355 YP_889068.1 identified by match to protein family HMM PF01512 YP_889070.1 identified by match to protein family HMM PF01796 YP_889072.1 identified by match to protein family HMM PF03446; match to protein family HMM PF03807 YP_889073.1 identified by match to protein family HMM PF03446; match to protein family HMM PF03807 YP_889074.1 identified by match to protein family HMM PF00067 YP_889076.1 identified by match to protein family HMM PF00296 YP_889077.1 identified by match to protein family HMM PF07045 YP_889079.1 identified by match to protein family HMM PF00067 YP_889081.1 identified by match to protein family HMM PF00440 YP_889082.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_889083.1 identified by match to protein family HMM PF01636 YP_889084.1 identified by match to protein family HMM PF00107 YP_889085.1 identified by match to protein family HMM PF00067 YP_889087.1 identified by match to protein family HMM PF00440 YP_889088.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_889089.1 identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930 YP_889090.1 identified by match to protein family HMM PF02515 YP_889091.1 identified by match to protein family HMM PF00106 YP_889092.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_889093.1 identified by match to protein family HMM PF04909 YP_889095.1 identified by match to protein family HMM PF02627 YP_889096.1 identified by match to protein family HMM PF00355 YP_889098.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_889100.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_889101.1 identified by match to protein family HMM PF00441; match to protein family HMM PF08028 YP_889102.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_889103.1 identified by match to protein family HMM PF00440 YP_889105.1 identified by match to protein family HMM PF00106 YP_889106.1 identified by match to protein family HMM PF00106 YP_889107.1 identified by match to protein family HMM PF02515 YP_889108.1 identified by match to protein family HMM PF00378 YP_889109.1 identified by match to protein family HMM PF00557 YP_889110.1 identified by match to protein family HMM PF00557 YP_889111.1 identified by match to protein family HMM PF04909 YP_889112.1 identified by match to protein family HMM PF00067 YP_889114.1 identified by match to protein family HMM PF00440 YP_889115.1 identified by match to protein family HMM PF00106 YP_889116.1 identified by match to protein family HMM PF00561 YP_889117.1 identified by match to protein family HMM PF04199 YP_889118.1 catalyzes the formation of 5-alpha-androstane-3,17-dione from androsterone; Acts on other 3-alpha-hydroxysteroids and on 9-, 11- and 15-hydroxyprostaglandin. YP_889119.1 identified by match to protein family HMM PF00296 YP_889120.1 initiates steroid ring degradation; catalyzes the transhydrogenation of 3-keto-4-ene-steroid to 3-keto-1,4-diene-steroid e.g., progesterone to 1,4-androstadiene-3,17-dione YP_889121.1 catalyzes the cleavage of 3-(2,3-dihydroxyphenyl) propionate into 2-hydroxy-6-oxonona-2,4-diene-1,9-dioate; part of the 3-phenylpropionic acid degradation pathway; member of the protocatechuate 4,5-dioxygenase family YP_889122.1 catalyzes the formation of 3-(2,3-dihydroxyphenyl)propionate from 3-(3-hydroxyphenyl)propionate YP_889123.1 identified by match to protein family HMM PF00561 YP_889124.1 identified by match to protein family HMM PF01614 YP_889125.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01266 YP_889126.1 identified by match to protein family HMM PF03308; match to protein family HMM TIGR00750 YP_889127.1 identified by match to protein family HMM PF00106 YP_889128.1 identified by match to protein family HMM PF00106 YP_889129.1 identified by match to protein family HMM PF00378 YP_889130.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771 YP_889131.1 identified by match to protein family HMM PF00441; match to protein family HMM PF08028 YP_889132.1 identified by match to protein family HMM PF00501 YP_889133.1 identified by match to protein family HMM PF00111 YP_889134.1 identified by match to protein family HMM PF02515 YP_889135.1 identified by match to protein family HMM PF00296 YP_889136.1 identified by match to protein family HMM PF02310; match to protein family HMM TIGR00640 YP_889137.1 identified by match to protein family HMM PF01642; match to protein family HMM TIGR00641 YP_889138.1 identified by match to protein family HMM PF00106 YP_889139.1 identified by match to protein family HMM PF00501 YP_889141.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_889143.1 identified by match to protein family HMM PF00067 YP_889144.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_889145.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_889146.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00777; match to protein family HMM TIGR00778 YP_889147.1 identified by match to protein family HMM PF00578 YP_889152.1 activates fatty acids by binding to coenzyme A YP_889155.1 identified by match to protein family HMM PF01725; match to protein family HMM TIGR00042 YP_889156.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_889158.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_889159.1 identified by match to protein family HMM PF01694 YP_889160.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136 YP_889161.1 identified by match to protein family HMM PF02597 YP_889162.1 identified by match to protein family HMM PF01398 YP_889163.1 identified by match to protein family HMM PF03576 YP_889165.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA YP_889166.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_889170.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02094 YP_889171.1 identified by match to protein family HMM PF00128 YP_889172.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_889173.1 identified by match to protein family HMM PF00085; match to protein family HMM PF07719 YP_889175.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis YP_889176.1 identified by match to protein family HMM PF00903; match to protein family HMM TIGR03081 YP_889178.1 identified by match to protein family HMM PF01939 YP_889179.1 identified by match to protein family HMM PF00211; match to protein family HMM PF00672 YP_889180.1 identified by match to protein family HMM PF00165; match to protein family HMM PF00730; match to protein family HMM PF02805; match to protein family HMM PF06029 YP_889181.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_889182.1 identified by similarity to GP:150004; match to protein family HMM PF07929 YP_889183.1 identified by match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589 YP_889184.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_889185.1 identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636 YP_889187.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_889188.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_889189.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_889190.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_889191.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the subunit delta is part of the catalytic core of the ATP synthase complex YP_889192.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_889193.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_889194.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_889197.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_889198.1 identified by similarity to GP:150004; match to protein family HMM PF07929 YP_889199.1 identified by match to protein family HMM PF00953 YP_889200.1 identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057 YP_889201.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536 YP_889202.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_889203.1 identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105 YP_889204.1 activates fatty acids by binding to coenzyme A YP_889205.1 identified by match to protein family HMM PF00440 YP_889206.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_889207.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_889208.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_889209.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_889210.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_889211.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_889213.1 identified by match to protein family HMM PF00668 YP_889214.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494 YP_889215.1 identified by match to protein family HMM PF00440 YP_889217.1 identified by match to protein family HMM PF05988 YP_889218.1 identified by match to protein family HMM PF00296 YP_889219.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_889220.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545 YP_889222.1 identified by match to protein family HMM PF03060 YP_889223.1 identified by match to protein family HMM PF00583 YP_889224.1 identified by match to protein family HMM PF00903 YP_889225.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_889226.1 identified by match to protein family HMM PF01243 YP_889227.1 identified by match to protein family HMM PF00857 YP_889228.1 identified by similarity to SP:P22255; match to protein family HMM PF00459 YP_889229.1 in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from EScherichia coli involved in cysteine biosynthesis YP_889230.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_889231.1 identified by match to protein family HMM PF07690 YP_889232.1 identified by match to protein family HMM PF01636 YP_889234.1 identified by match to protein family HMM PF00440 YP_889235.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_889236.1 identified by match to protein family HMM PF00484 YP_889237.1 identified by match to protein family HMM PF02366 YP_889238.1 identified by match to protein family HMM PF00535; match to protein family HMM PF04138 YP_889239.1 identified by match to protein family HMM PF02366 YP_889240.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_889241.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_889246.1 identified by match to protein family HMM PF00528 YP_889247.1 identified by match to protein family HMM PF00528 YP_889248.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_889249.1 identified by match to protein family HMM PF00496 YP_889250.1 identified by match to protein family HMM PF00561 YP_889251.1 identified by match to protein family HMM PF08028 YP_889252.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_889253.1 identified by match to protein family HMM PF01596 YP_889255.1 identified by match to protein family HMM PF00149 YP_889256.1 identified by match to protein family HMM PF00300 YP_889259.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_889260.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_889264.1 identified by match to protein family HMM PF01987 YP_889265.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_889267.1 identified by match to protein family HMM PF00403 YP_889268.1 identified by match to protein family HMM PF03713 YP_889269.1 identified by match to protein family HMM PF00211 YP_889270.1 identified by match to protein family HMM PF01590 YP_889271.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM TIGR02415 YP_889272.1 identified by match to protein family HMM PF00107 YP_889273.1 identified by match to protein family HMM PF07992 YP_889274.1 identified by match to protein family HMM PF01522 YP_889276.1 identified by match to protein family HMM PF02720 YP_889278.1 identified by match to protein family HMM PF00903 YP_889279.1 identified by match to protein family HMM PF01230 YP_889280.1 identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026 YP_889281.1 identified by match to protein family HMM PF00296 YP_889282.1 identified by match to protein family HMM PF03167 YP_889283.1 identified by match to protein family HMM PF01638 YP_889286.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_889287.1 identified by match to protein family HMM PF01694 YP_889288.1 identified by match to protein family HMM PF00067 YP_889289.1 identified by match to protein family HMM PF00440 YP_889290.1 identified by match to protein family HMM PF04954; match to protein family HMM PF08021 YP_889291.1 identified by match to protein family HMM PF01757 YP_889292.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880 YP_889295.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_889296.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_889297.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710 YP_889299.1 kgd; produces succinic semialdehyde; part of alternative pathway from alpha-ketoglutarate to succinate; essential for normal growth YP_889300.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_889301.1 identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500 YP_889302.1 identified by match to protein family HMM PF01381 YP_889303.1 identified by match to protein family HMM PF00106 YP_889304.1 identified by match to protein family HMM PF04069 YP_889305.1 identified by match to protein family HMM PF00390; match to protein family HMM PF03949 YP_889306.1 identified by match to protein family HMM PF01544; match to protein family HMM TIGR00383 YP_889308.1 identified by match to protein family HMM PF00005 YP_889309.1 identified by match to protein family HMM PF00528 YP_889310.1 identified by match to protein family HMM PF00528 YP_889311.1 identified by match to protein family HMM PF01547 YP_889314.1 identified by match to protein family HMM PF03328 YP_889315.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03448 YP_889316.1 identified by match to protein family HMM PF06210 YP_889318.1 identified by match to protein family HMM PF01883 YP_889319.1 mediates the export of protein precursors bearing twin-arginine signal peptides YP_889320.1 identified by match to protein family HMM PF00089 YP_889322.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in M. tuberculosis this protein is involved in heat shock, oxidative stress and virulence YP_889323.1 identified by match to protein family HMM PF01596 YP_889324.1 identified by match to protein family HMM PF00440 YP_889325.1 identified by match to protein family HMM PF00005 YP_889329.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_889330.1 identified by match to protein family HMM PF00534; match to protein family HMM TIGR02149 YP_889332.1 identified by match to protein family HMM PF03352; match to protein family HMM TIGR00624 YP_889334.1 identified by match to protein family HMM PF00535 YP_889335.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_889336.1 activates fatty acids by binding to coenzyme A; may be involved in acyclic terpene utilization YP_889337.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_889338.1 identified by match to protein family HMM PF07721 YP_889343.1 identified by similarity to GP:150004; match to protein family HMM PF07929 YP_889344.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_889345.1 identified by similarity to GP:16551202; match to protein family HMM PF01527 YP_889350.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates YP_889351.1 identified by match to protein family HMM PF00005 YP_889352.1 catalyzes the formation of succinate and diaminoheptanedioate from succinyldiaminoheptanedioate YP_889355.1 identified by match to protein family HMM PF01844; match to protein family HMM PF02720 YP_889362.1 activates fatty acids by binding to coenzyme A YP_889363.1 identified by match to protein family HMM PF03745 YP_889364.1 identified by match to protein family HMM PF00293 YP_889365.1 identified by match to protein family HMM PF01619 YP_889366.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01236 YP_889368.1 catalyzes the formation of N-succinyl-LL-2,6-diaminopimelate from N-succinyl-L-2-amino-6-oxopimelate in lysine biosynthesis YP_889369.1 identified by match to protein family HMM PF00037 YP_889370.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_889371.1 identified by match to protein family HMM PF04264 YP_889372.1 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase; catalyzes radical-mediated transfer of hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione to form 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO); functions in F420 biosynthesis YP_889375.1 identified by match to protein family HMM PF02585 YP_889376.1 identified by match to protein family HMM PF00496 YP_889378.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_889382.1 identified by match to protein family HMM PF01243 YP_889383.1 identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351 YP_889384.1 identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684 YP_889385.1 identified by match to protein family HMM TIGR01660 YP_889386.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580 YP_889387.1 identified by match to protein family HMM PF07690 YP_889388.1 identified by match to protein family HMM PF00232 YP_889389.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_889390.1 identified by match to protein family HMM PF00933; match to protein family HMM PF01915 YP_889391.1 identified by match to protein family HMM PF01547 YP_889392.1 identified by match to protein family HMM PF00528 YP_889393.1 identified by match to protein family HMM PF00528 YP_889394.1 identified by match to protein family HMM PF00293 YP_889395.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction YP_889396.1 involved in the fifth mannose transfer of phosphatidylinositol mannoside synthesis YP_889401.1 identified by match to protein family HMM PF00881 YP_889402.1 identified by match to protein family HMM PF00730 YP_889404.1 identified by similarity to GB:AAB48182.1; match to protein family HMM PF02518; match to protein family HMM PF06580 YP_889405.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_889407.1 identified by match to protein family HMM PF00474 YP_889408.1 identified by match to protein family HMM PF01638 YP_889409.1 identified by match to protein family HMM PF04069 YP_889410.1 identified by match to protein family HMM PF00107; match to protein family HMM TIGR02817 YP_889411.1 identified by match to protein family HMM PF04341 YP_889412.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813 YP_889413.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_889416.1 identified by match to protein family HMM PF01243 YP_889418.1 identified by match to protein family HMM PF08002 YP_889419.1 identified by match to protein family HMM PF02409 YP_889420.1 identified by match to protein family HMM PF00392 YP_889421.1 Modulates the activities of several enzymes which are inactive in their acetylated form YP_889423.1 identified by match to protein family HMM PF00440 YP_889425.1 identified by match to protein family HMM PF07681 YP_889427.1 identified by similarity to GP:2935133; match to protein family HMM PF01609 YP_889428.1 identified by match to protein family HMM PF03060 YP_889429.1 identified by match to protein family HMM PF00106 YP_889430.1 identified by match to protein family HMM PF02515 YP_889431.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_889432.1 identified by match to protein family HMM PF05534 YP_889433.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00900 YP_889434.1 identified by match to protein family HMM PF02517 YP_889435.1 identified by match to protein family HMM PF01370; match to protein family HMM PF05368 YP_889436.1 identified by match to protein family HMM PF00440 YP_889437.1 identified by match to protein family HMM PF00248 YP_889438.1 identified by match to protein family HMM PF00132 YP_889439.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_889440.1 identified by match to protein family HMM PF07690 YP_889442.1 identified by match to protein family HMM PF02469 YP_889443.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_889444.1 identified by match to protein family HMM PF00378 YP_889445.1 identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930 YP_889446.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_889449.1 identified by match to protein family HMM PF07681 YP_889450.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_889451.1 identified by match to protein family HMM PF00440 YP_889455.1 identified by match to protein family HMM PF00561 YP_889456.1 identified by match to protein family HMM PF00202; match to protein family HMM PF01636 YP_889457.1 identified by match to protein family HMM PF00561 YP_889460.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_889461.1 identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026 YP_889462.1 identified by match to protein family HMM PF00903 YP_889464.1 identified by match to protein family HMM PF07366 YP_889465.1 identified by match to protein family HMM PF01872 YP_889466.1 identified by match to protein family HMM PF07859 YP_889467.1 identified by match to protein family HMM PF00583 YP_889468.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_889470.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_889472.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_889473.1 identified by match to protein family HMM PF02609; match to protein family HMM TIGR01280 YP_889474.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_889479.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_889480.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_889481.1 identified by match to protein family HMM PF00106 YP_889482.1 identified by match to protein family HMM PF01594 YP_889483.1 identified by match to protein family HMM PF01738 YP_889485.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_889486.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_889487.1 identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730 YP_889488.1 identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946 YP_889490.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_889491.1 identified by match to protein family HMM PF00582 YP_889493.1 identified by match to protein family HMM PF02562 YP_889494.1 identified by match to protein family HMM PF03405 YP_889495.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_889497.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis YP_889502.1 identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055 YP_889503.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_889504.1 identified by match to protein family HMM PF02136 YP_889505.1 identified by match to protein family HMM PF03190 YP_889507.1 identified by match to protein family HMM PF02585 YP_889509.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_889511.1 catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine YP_889512.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_889513.1 identified by match to protein family HMM PF06271 YP_889516.1 identified by match to protein family HMM PF00291; match to protein family HMM PF00571; match to protein family HMM TIGR01137 YP_889517.1 identified by match to protein family HMM PF07859 YP_889518.1 identified by match to protein family HMM PF00657 YP_889519.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_889520.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis YP_889521.1 identified by match to protein family HMM PF06539 YP_889522.1 catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA YP_889523.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_889526.1 identified by match to protein family HMM PF05995 YP_889528.1 identified by match to protein family HMM PF00440 YP_889529.1 identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976 YP_889530.1 identified by match to protein family HMM PF01734 YP_889531.1 identified by match to protein family HMM PF01734 YP_889532.1 identified by match to protein family HMM PF00107 YP_889533.1 identified by match to protein family HMM PF01113 YP_889534.1 identified by match to protein family HMM PF00376 YP_889537.1 activates fatty acids by binding to coenzyme A YP_889541.1 activates fatty acids by binding to coenzyme A YP_889543.1 catalyzes the formation of formyl-CoA from oxalyl-CoA YP_889546.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_889547.1 identified by match to protein family HMM PF00440 YP_889548.1 identified by match to protein family HMM PF00375 YP_889549.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121 YP_889550.1 identified by match to protein family HMM PF02518 YP_889551.1 identified by match to protein family HMM PF00072 YP_889552.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_889553.1 identified by match to protein family HMM PF00440 YP_889558.1 identified by match to protein family HMM PF00005 YP_889561.1 identified by match to protein family HMM PF01471; match to protein family HMM PF01510 YP_889563.1 identified by match to protein family HMM PF00005 YP_889564.1 identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_889565.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_889575.1 identified by match to protein family HMM PF01169 YP_889576.1 identified by match to protein family HMM PF01380 YP_889577.1 identified by match to protein family HMM PF00440 YP_889580.1 identified by match to protein family HMM PF03069 YP_889581.1 identified by match to protein family HMM PF02293 YP_889582.1 identified by match to protein family HMM PF01047 YP_889584.1 identified by match to protein family HMM PF00440 YP_889585.1 identified by match to protein family HMM PF00561 YP_889589.1 identified by match to protein family HMM PF00722 YP_889590.1 identified by match to protein family HMM PF00440 YP_889591.1 identified by match to protein family HMM PF07690 YP_889592.1 identified by match to protein family HMM PF00501 YP_889593.1 identified by match to protein family HMM TIGR03083 YP_889598.1 identified by match to protein family HMM PF00891 YP_889602.1 identified by match to protein family HMM PF03069; match to protein family HMM TIGR01409 YP_889603.1 catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide YP_889604.1 identified by match to protein family HMM PF01226 YP_889608.1 identified by match to protein family HMM PF04909 YP_889611.1 identified by match to protein family HMM PF00497; match to protein family HMM TIGR02995 YP_889612.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; match to protein family HMM TIGR03004 YP_889613.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; match to protein family HMM TIGR03003 YP_889614.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR03005 YP_889615.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702 YP_889616.1 identified by match to protein family HMM PF00795 YP_889617.1 identified by match to protein family HMM PF00120 YP_889618.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_889619.1 identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026 YP_889621.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_889622.1 identified by similarity to GP:150004; match to protein family HMM PF07929 YP_889624.1 identified by match to protein family HMM PF00106 YP_889626.1 identified by match to protein family HMM PF00581; match to protein family HMM PF00753 YP_889627.1 identified by match to protein family HMM PF00581 YP_889628.1 identified by match to protein family HMM PF01925 YP_889629.1 identified by match to protein family HMM PF02583 YP_889630.1 identified by match to protein family HMM PF03625 YP_889633.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_889634.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_889635.1 identified by match to protein family HMM PF02669 YP_889636.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702 YP_889637.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_889638.1 identified by match to protein family HMM PF00271 YP_889639.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_889640.1 identified by match to protein family HMM PF00270 YP_889641.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01593 YP_889643.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_889644.1 identified by match to protein family HMM PF00501 YP_889645.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525 YP_889646.1 identified by match to protein family HMM PF01022 YP_889649.1 identified by match to protein family HMM PF01790 YP_889651.1 identified by match to protein family HMM PF04055 YP_889654.1 identified by match to protein family HMM PF02541 YP_889655.1 identified by match to protein family HMM PF04417; match to protein family HMM PF04977 YP_889656.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_889659.1 identified by match to protein family HMM PF03239 YP_889660.1 identified by match to protein family HMM PF04261; match to protein family HMM TIGR01409; match to protein family HMM TIGR01412; match to protein family HMM TIGR01413 YP_889662.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase Era YP_889663.1 identified by similarity to SP:P37474; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM TIGR00580 YP_889664.1 identified by match to protein family HMM PF00440 YP_889665.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_889666.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_889667.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014 YP_889669.1 identified by match to protein family HMM PF00106 YP_889670.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_889671.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_889672.1 identified by match to protein family HMM PF00037 YP_889674.1 activates fatty acids by binding to coenzyme A YP_889675.1 catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis YP_889676.1 identified by match to protein family HMM PF00069; match to protein family HMM PF01163 YP_889677.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_889678.1 identified by match to protein family HMM PF03990; match to protein family HMM PF06737; match to protein family HMM PF07501 YP_889679.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_889680.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_889681.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_889682.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_889683.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; match to protein family HMM TIGR02957 YP_889684.1 catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine YP_889685.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_889686.1 identified by match to protein family HMM PF02366 YP_889688.1 catalyzes the degradation of arginine to citruline and ammonia YP_889689.1 identified by similarity to SP:P22538; match to protein family HMM PF00376; match to protein family HMM TIGR01950 YP_889693.1 identified by match to protein family HMM PF02275 YP_889696.1 catalyzes the conversion of shikimate to 3-dehydroshikimate YP_889697.1 identified by match to protein family HMM PF00027 YP_889701.1 identified by match to protein family HMM TIGR00688 YP_889702.1 identified by match to protein family HMM PF03446 YP_889703.1 identified by match to protein family HMM PF07690 YP_889704.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_889705.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_889707.1 identified by match to protein family HMM PF00583 YP_889708.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_889709.1 identified by match to protein family HMM PF00483 YP_889710.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727 YP_889711.1 identified by match to protein family HMM PF00324 YP_889712.1 identified by match to protein family HMM PF00582 YP_889713.1 identified by match to protein family HMM PF01614 YP_889714.1 catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate YP_889715.1 identified by match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR01505 YP_889716.1 identified by similarity to SP:P30147; match to protein family HMM PF01261 YP_889717.1 identified by match to protein family HMM TIGR02605 YP_889720.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock YP_889723.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177 YP_889724.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595 YP_889725.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_889726.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_889727.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_889728.1 identified by match to protein family HMM PF07287 YP_889729.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_889730.1 identified by match to protein family HMM PF01039 YP_889731.1 identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786 YP_889732.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_889733.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_889734.1 identified by match to protein family HMM PF00924 YP_889742.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF05368 YP_889743.1 identified by match to protein family HMM PF08044 YP_889746.1 identified by match to protein family HMM PF00245; match to protein family HMM TIGR01409 YP_889750.1 identified by match to protein family HMM PF00069 YP_889752.1 involved in de novo purine biosynthesis YP_889753.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_889756.1 identified by match to protein family HMM PF00296 YP_889757.1 identified by match to protein family HMM PF00296 YP_889758.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_889759.1 identified by match to protein family HMM PF00440 YP_889760.1 identified by match to protein family HMM PF00326; match to protein family HMM PF02129 YP_889761.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_889762.1 catalyzes the interconversion of succinyl-CoA and succinate YP_889763.1 identified by match to protein family HMM PF01551 YP_889767.1 identified by match to protein family HMM PF00528 YP_889768.1 identified by match to protein family HMM PF00005 YP_889769.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_889770.1 identified by match to protein family HMM PF00037 YP_889771.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073 YP_889773.1 identified by match to protein family HMM TIGR01808 YP_889774.1 identified by match to protein family HMM PF01757 YP_889776.1 identified by match to protein family HMM PF00171 YP_889777.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_889779.1 identified by match to protein family HMM PF01381 YP_889781.1 identified by match to protein family HMM PF00106 YP_889782.1 identified by match to protein family HMM PF01149; match to protein family HMM PF06831 YP_889784.1 identified by match to protein family HMM PF04020 YP_889785.1 catalyzes the formation of precorrin 6x from precorrin 5 YP_889787.1 identified by match to protein family HMM PF01740 YP_889788.1 identified by match to protein family HMM PF00989; match to protein family HMM PF01739; match to protein family HMM PF03705; match to protein family HMM TIGR00229 YP_889790.1 identified by match to protein family HMM PF03861 YP_889791.1 identified by match to protein family HMM PF07690 YP_889794.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879 YP_889796.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_889797.1 identified by match to protein family HMM PF04982 YP_889798.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_889799.1 identified by similarity to SP:P16083; match to protein family HMM PF02525 YP_889801.1 identified by match to protein family HMM PF01047 YP_889802.1 identified by match to protein family HMM PF00440 YP_889803.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_889804.1 identified by match to protein family HMM PF00106 YP_889805.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA and has been shown to have polymerase activity YP_889806.1 identified by match to protein family HMM PF00005 YP_889807.1 identified by match to protein family HMM PF00528 YP_889808.1 identified by match to protein family HMM PF00528 YP_889809.1 identified by match to protein family HMM PF01547 YP_889810.1 identified by match to protein family HMM PF04198 YP_889811.1 identified by match to protein family HMM PF01232; match to protein family HMM PF08125 YP_889812.1 identified by match to protein family HMM PF00294 YP_889814.1 identified by match to protein family HMM PF01022; match to protein family HMM PF01047 YP_889815.1 identified by match to protein family HMM PF02735; match to protein family HMM TIGR02772 YP_889816.1 identified by match to protein family HMM TIGR02206 YP_889818.1 identified by match to protein family HMM PF01844; match to protein family HMM PF02720 YP_889819.1 identified by match to protein family HMM PF00106 YP_889820.1 identified by match to protein family HMM PF01113; match to protein family HMM PF01408 YP_889824.1 identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197 YP_889825.1 identified by match to protein family HMM PF05908 YP_889826.1 ATP-dependent carboxylate-amine ligase YP_889828.1 identified by match to protein family HMM PF00205; match to protein family HMM PF00355; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_889829.1 identified by match to protein family HMM PF00355; match to protein family HMM PF01645 YP_889830.1 identified by match to protein family HMM PF01047 YP_889831.1 identified by match to protein family HMM PF00106 YP_889832.1 identified by match to protein family HMM PF00440 YP_889837.1 identified by match to protein family HMM PF01022 YP_889839.1 identified by match to protein family HMM PF01654 YP_889840.1 identified by match to protein family HMM PF02322 YP_889842.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_889843.1 identified by match to protein family HMM PF03055 YP_889844.1 identified by match to protein family HMM PF01638 YP_889845.1 identified by match to protein family HMM PF00011 YP_889846.1 identified by match to protein family HMM PF00583 YP_889848.1 identified by match to protein family HMM PF06172 YP_889849.1 identified by match to protein family HMM PF05853 YP_889850.1 identified by match to protein family HMM PF00903 YP_889852.1 identified by match to protein family HMM PF00441; match to protein family HMM PF08028 YP_889853.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_889854.1 identified by match to protein family HMM PF00378 YP_889855.1 identified by match to protein family HMM PF00441 YP_889856.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_889857.1 identified by match to protein family HMM PF02515 YP_889858.1 identified by match to protein family HMM PF00106 YP_889859.1 identified by match to protein family HMM PF01266 YP_889860.1 identified by match to protein family HMM PF00296 YP_889861.1 identified by match to protein family HMM PF00355 YP_889862.1 identified by match to protein family HMM PF00106 YP_889864.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_889865.1 identified by match to protein family HMM PF00501 YP_889866.1 identified by match to protein family HMM PF00106 YP_889867.1 identified by match to protein family HMM PF00501 YP_889870.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_889871.1 identified by match to protein family HMM PF00144 YP_889873.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_889874.1 identified by match to protein family HMM PF06202 YP_889875.1 identified by match to protein family HMM PF00534 YP_889876.1 identified by match to protein family HMM PF01039 YP_889878.1 identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062 YP_889882.1 activates fatty acids by binding to coenzyme A YP_889883.1 identified by match to protein family HMM PF00501 YP_889884.1 identified by match to protein family HMM PF00196 YP_889885.1 identified by match to protein family HMM PF00561 YP_889886.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_889887.1 identified by match to protein family HMM PF02133 YP_889888.1 identified by match to protein family HMM PF00795 YP_889889.1 identified by match to protein family HMM PF00815 YP_889890.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_889891.1 identified by match to protein family HMM PF00561; match to protein family HMM PF06441 YP_889892.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_889893.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_889894.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_889895.1 identified by similarity to SP:Q10531; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_889896.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_889897.1 identified by match to protein family HMM PF00254 YP_889901.1 identified by similarity to GB:CAD18826.1 YP_889902.1 identified by match to protein family HMM PF01047 YP_889903.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_889904.1 identified by match to protein family HMM PF04073 YP_889905.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH YP_889906.1 identified by match to protein family HMM PF00440 YP_889907.1 identified by match to protein family HMM PF05977; match to protein family HMM PF07690 YP_889908.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate YP_889909.1 forms citrate from oxaloacetate and acetyl-CoA; functions in TCA cycle YP_889911.1 identified by match to protein family HMM PF00903 YP_889913.1 identified by match to protein family HMM PF00903 YP_889914.1 identified by match to protein family HMM PF00037; match to protein family HMM PF07992 YP_889916.1 identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500 YP_889917.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate YP_889920.1 identified by match to protein family HMM PF00588 YP_889921.1 identified by match to protein family HMM PF01047 YP_889926.1 identified by match to protein family HMM PF07690 YP_889929.1 identified by match to protein family HMM PF00313 YP_889930.1 identified by match to protein family HMM PF03733 YP_889931.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_889932.1 identified by match to protein family HMM PF02597 YP_889933.1 identified by match to protein family HMM PF06737 YP_889934.1 identified by match to protein family HMM PF02391 YP_889935.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177 YP_889936.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_889939.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851 YP_889940.1 identified by match to protein family HMM PF07883 YP_889944.1 identified by match to protein family HMM PF00106 YP_889945.1 identified by match to protein family HMM PF06779; match to protein family HMM PF07690 YP_889946.1 identified by match to protein family HMM PF00126 YP_889947.1 identified by match to protein family HMM PF00106 YP_889949.1 identified by match to protein family HMM PF00296 YP_889950.1 identified by match to protein family HMM PF01243 YP_889951.1 identified by match to protein family HMM PF00440 YP_889952.1 identified by match to protein family HMM PF01494 YP_889953.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_889954.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_889956.1 identified by match to protein family HMM PF01042 YP_889957.1 identified by match to protein family HMM PF01047 YP_889958.1 identified by match to protein family HMM PF00155; match to protein family HMM PF01212 YP_889960.1 catalyzes the formation of S-ureidoglycolate and urea from allantoate YP_889961.1 identified by match to protein family HMM PF01522 YP_889962.1 identified by match to protein family HMM PF01177 YP_889963.1 identified by match to protein family HMM PF02133 YP_889964.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_889965.1 identified by match to protein family HMM PF00296 YP_889966.1 identified by match to protein family HMM PF00582 YP_889967.1 identified by match to protein family HMM PF02515 YP_889968.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_889969.1 identified by match to protein family HMM PF03364 YP_889972.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746 YP_889974.1 identified by match to protein family HMM PF02698 YP_889975.1 identified by match to protein family HMM PF01553 YP_889976.1 identified by match to protein family HMM PF01734 YP_889977.1 identified by match to protein family HMM PF05121 YP_889978.1 identified by match to protein family HMM PF00741 YP_889979.1 identified by match to protein family HMM PF06386 YP_889985.1 identified by match to protein family HMM PF00149 YP_889987.1 identified by match to protein family HMM PF00589 YP_889989.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_889990.1 identified by match to protein family HMM PF07883 YP_889991.1 identified by match to protein family HMM PF00107 YP_889993.1 identified by match to protein family HMM PF01966 YP_889994.1 identified by match to protein family HMM PF01152 YP_889995.1 identified by match to protein family HMM PF05305 YP_890001.1 identified by match to protein family HMM PF03405 YP_890003.1 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_890004.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_890005.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_890006.1 identified by match to protein family HMM PF01047 YP_890007.1 identified by match to protein family HMM PF00107 YP_890008.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00972 YP_890009.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_890010.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_890011.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975 YP_890012.1 identified by match to protein family HMM PF00486 YP_890014.1 identified by match to protein family HMM PF00085 YP_890017.1 identified by match to protein family HMM PF00581 YP_890018.1 identified by match to protein family HMM PF07210 YP_890023.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate YP_890024.1 identified by match to protein family HMM PF01571 YP_890026.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_890027.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368 YP_890028.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_890029.1 identified by match to protein family HMM PF01494 YP_890030.1 identified by match to protein family HMM PF00106 YP_890035.1 identified by match to protein family HMM PF00005 YP_890036.1 identified by match to protein family HMM PF00528 YP_890037.1 identified by match to protein family HMM PF03180 YP_890039.1 identified by match to protein family HMM PF00440 YP_890040.1 identified by match to protein family HMM PF00106 YP_890041.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_890042.1 identified by match to protein family HMM PF02627 YP_890043.1 identified by match to protein family HMM PF00171 YP_890046.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_890047.1 identified by match to protein family HMM PF01243 YP_890050.1 identified by match to protein family HMM PF02517 YP_890052.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_890053.1 identified by match to protein family HMM PF00999 YP_890054.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_890055.1 identified by match to protein family HMM PF00903 YP_890056.1 catalyzes the removal of amino acids from the N termini of peptides YP_890057.1 identified by match to protein family HMM PF04261; match to protein family HMM TIGR01413 YP_890058.1 identified by match to protein family HMM PF04454 YP_890059.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_890060.1 With PurL and PurQ catalyzes the conversion of formylglycinamide ribonucleotide, ATP, and glutamine to formylglycinamidine ribonucleotide, ADP, and glutamate in the fourth step of the purine biosynthetic pathway YP_890061.1 identified by match to protein family HMM PF00753 YP_890062.1 proposed role in polysaccahride synthesis YP_890064.1 identified by similarity to SP:P06610; match to protein family HMM PF00255 YP_890065.1 identified by match to protein family HMM PF00440 YP_890067.1 identified by match to protein family HMM PF00326; match to protein family HMM PF02897 YP_890068.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_890071.1 identified by match to protein family HMM PF08044 YP_890073.1 identified by match to protein family HMM PF00067 YP_890074.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_890075.1 identified by match to protein family HMM PF04607 YP_890076.1 identified by match to protein family HMM PF00324 YP_890077.1 identified by match to protein family HMM PF00440 YP_890078.1 identified by match to protein family HMM PF00756 YP_890079.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_890080.1 identified by match to protein family HMM PF00067 YP_890081.1 identified by match to protein family HMM PF00440 YP_890083.1 identified by match to protein family HMM PF02627 YP_890084.1 identified by match to protein family HMM PF03446; match to protein family HMM PF03721 YP_890085.1 identified by match to protein family HMM PF00106 YP_890086.1 identified by match to protein family HMM PF00171 YP_890087.1 identified by match to protein family HMM PF00440 YP_890088.1 identified by match to protein family HMM PF00067 YP_890089.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_890090.1 identified by match to protein family HMM PF00067 YP_890093.1 identified by match to protein family HMM PF00107 YP_890094.1 identified by match to protein family HMM PF02136 YP_890095.1 identified by match to protein family HMM PF00106 YP_890097.1 identified by match to protein family HMM PF01230 YP_890098.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_890099.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_890104.1 identified by match to protein family HMM PF01083 YP_890105.1 identified by match to protein family HMM PF01427 YP_890106.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738 YP_890107.1 identified by match to protein family HMM PF06240 YP_890108.1 identified by match to protein family HMM PF00941; match to protein family HMM PF03450 YP_890109.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799 YP_890110.1 identified by match to protein family HMM PF03446; match to protein family HMM PF03807 YP_890111.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_890112.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_890117.1 identified by match to protein family HMM PF00982 YP_890118.1 identified by similarity to GB:CAD18826.1 YP_890121.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_890122.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_890123.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_890124.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_890125.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_890126.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_890127.1 identified by match to protein family HMM PF02405 YP_890128.1 identified by match to protein family HMM PF02405 YP_890129.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_890132.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771 YP_890133.1 identified by match to protein family HMM PF00441; match to protein family HMM PF08028 YP_890134.1 activates fatty acids by binding to coenzyme A YP_890135.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368; match to protein family HMM PF07993 YP_890137.1 identified by match to protein family HMM PF00903 YP_890138.1 NADP-dependent semialdehyde dehydrogenase; part of alternative pathway from alpha-ketoglutarate to succinate YP_890139.1 identified by match to protein family HMM PF03060 YP_890140.1 activates fatty acids by binding to coenzyme A; in Mycobacterium may be involved in virulence YP_890141.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_890144.1 identified by match to protein family HMM PF00067 YP_890146.1 identified by match to protein family HMM PF00296 YP_890147.1 identified by match to protein family HMM PF01796 YP_890149.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_890151.1 identified by match to protein family HMM PF00355 YP_890157.1 identified by match to protein family HMM PF00106 YP_890161.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614 YP_890164.1 catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate YP_890165.1 catalyzes the formation of acetyl-CoA from acetalaldehyde YP_890166.1 identified by match to protein family HMM PF01689 YP_890167.2 initiates steroid ring degradation; catalyzes the transhydrogenation of 3-keto-4-ene-steroid to 3-keto-1,4-diene-steroid e.g., progesterone to 1,4-androstadiene-3,17-dione YP_890168.1 identified by match to protein family HMM PF01575 YP_890169.1 identified by match to protein family HMM PF00501 YP_890170.1 identified by match to protein family HMM PF00732; match to protein family HMM PF01266 YP_890171.1 identified by match to protein family HMM PF02698 YP_890174.1 identified by match to protein family HMM PF00535 YP_890177.1 identified by match to protein family HMM PF00534 YP_890178.1 identified by match to protein family HMM PF00657 YP_890180.1 identified by match to protein family HMM PF02706 YP_890181.1 identified by match to protein family HMM PF02706 YP_890182.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_890183.1 identified by similarity to SP:O07299; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_890185.1 identified by match to protein family HMM PF04932 YP_890187.1 identified by match to protein family HMM PF00535 YP_890188.1 identified by match to protein family HMM PF01522 YP_890189.1 identified by match to protein family HMM PF00535 YP_890190.1 identified by match to protein family HMM PF00534 YP_890192.1 identified by match to protein family HMM PF00106 YP_890193.1 identified by match to protein family HMM PF00732; match to protein family HMM PF01266; match to protein family HMM PF05199 YP_890194.1 identified by match to protein family HMM PF01943 YP_890196.1 catalyzes the formation of 5-aminovulinate from (S)-4-amino-5-oxopentanoate YP_890202.1 identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221 YP_890203.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_890204.1 identified by match to protein family HMM PF02585 YP_890207.1 identified by match to protein family HMM PF04101 YP_890208.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_890209.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207 YP_890210.1 identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025 YP_890211.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_890212.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135 YP_890213.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_890217.1 identified by match to protein family HMM PF01575 YP_890218.1 identified by match to protein family HMM PF01796 YP_890219.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771 YP_890220.1 identified by match to protein family HMM PF00441; match to protein family HMM PF08028 YP_890221.1 identified by match to protein family HMM PF00067 YP_890222.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_890224.1 identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026 YP_890225.1 identified by match to protein family HMM PF00106 YP_890226.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_890227.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_890228.1 identified by match to protein family HMM PF01144 YP_890230.1 identified by similarity to GB:AAF98273.1; match to protein family HMM PF03060 YP_890233.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_890234.1 identified by match to protein family HMM PF00440 YP_890236.1 identified by match to protein family HMM PF00106 YP_890237.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_890238.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771 YP_890239.1 identified by match to protein family HMM PF00441; match to protein family HMM PF08028 YP_890240.1 identified by match to protein family HMM PF00441; match to protein family HMM PF08028 YP_890241.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_890242.1 identified by match to protein family HMM PF02653 YP_890243.1 identified by match to protein family HMM PF00005 YP_890245.1 catalyzes the interconversion of D-xylose to D-xylulose YP_890246.1 identified by match to protein family HMM PF00480 YP_890247.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_890249.1 AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase YP_890250.1 identified by match to protein family HMM PF00106; match to protein family HMM TIGR01963 YP_890251.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_890252.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_890254.1 identified by match to protein family HMM PF00067 YP_890255.1 identified by match to protein family HMM PF00440 YP_890256.1 identified by match to protein family HMM PF00106 YP_890259.1 identified by match to protein family HMM PF01613 YP_890260.1 identified by match to protein family HMM PF00903 YP_890261.1 identified by match to protein family HMM PF00561 YP_890262.1 identified by match to protein family HMM PF08028 YP_890263.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_890265.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_890266.1 identified by match to protein family HMM PF00440 YP_890267.1 identified by match to protein family HMM PF02358; match to protein family HMM TIGR00685; match to protein family HMM TIGR01484 YP_890268.1 identified by match to protein family HMM PF00532 YP_890269.1 identified by match to protein family HMM PF00950 YP_890270.1 identified by match to protein family HMM PF00005 YP_890271.1 identified by match to protein family HMM PF01297 YP_890272.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683 YP_890274.1 identified by match to protein family HMM PF01297 YP_890275.1 identified by match to protein family HMM PF00005 YP_890276.1 identified by match to protein family HMM PF00881; match to protein family HMM TIGR02476 YP_890277.1 identified by match to protein family HMM PF03746 YP_890280.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525 YP_890282.1 identified by match to protein family HMM PF03773 YP_890284.1 identified by match to protein family HMM PF00005 YP_890285.1 identified by match to protein family HMM PF01032; match to protein family HMM PF02653 YP_890286.1 identified by match to protein family HMM PF01497 YP_890287.1 identified by match to protein family HMM PF01084; match to protein family HMM TIGR00165 YP_890288.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_890289.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_890290.1 identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009 YP_890291.1 identified by match to protein family HMM PF07683 YP_890292.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_890293.1 identified by match to protein family HMM PF00753 YP_890294.1 identified by match to protein family HMM PF02040; match to protein family HMM PF03600 YP_890295.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186 YP_890296.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_890297.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_890298.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_890299.1 identified by match to protein family HMM PF02559 YP_890301.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_890302.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair YP_890304.1 identified by match to protein family HMM PF00484 YP_890305.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730 YP_890306.1 identified by match to protein family HMM PF00561 YP_890307.1 identified by match to protein family HMM PF03992 YP_890308.1 identified by match to protein family HMM PF00144 YP_890309.1 identified by match to protein family HMM PF00300 YP_890312.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_890315.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_890317.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_890318.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_890322.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_890323.1 identified by match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526 YP_890324.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_890325.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_890326.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241 YP_890327.1 identified by match to protein family HMM PF00561 YP_890328.1 identified by match to protein family HMM PF00296 YP_890329.1 identified by match to protein family HMM PF00107 YP_890330.1 identified by match to protein family HMM PF04402 YP_890331.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_890332.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432 YP_890334.1 identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666 YP_890335.1 identified by match to protein family HMM PF00719 YP_890337.1 identified by match to protein family HMM PF02826 YP_890338.1 identified by match to protein family HMM PF01188 YP_890339.1 identified by match to protein family HMM PF01614 YP_890340.1 identified by match to protein family HMM PF01925 YP_890341.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_890342.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_890343.1 identified by match to protein family HMM PF00528 YP_890344.1 identified by match to protein family HMM PF00528 YP_890345.1 identified by match to protein family HMM PF00496 YP_890346.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_890347.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_890348.1 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377 YP_890350.1 identified by match to protein family HMM PF00072 YP_890351.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF05227 YP_890352.1 identified by match to protein family HMM PF00072; match to protein family HMM PF07228 YP_890353.1 identified by match to protein family HMM PF01188 YP_890354.1 catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate YP_890355.1 identified by match to protein family HMM PF00171 YP_890357.1 identified by match to protein family HMM PF03741 YP_890358.1 identified by match to protein family HMM PF00132; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733; match to protein family HMM TIGR02353 YP_890359.1 identified by match to protein family HMM PF01433 YP_890361.1 identified by match to protein family HMM PF00440 YP_890363.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_890367.1 identified by similarity to GP:4838457; match to protein family HMM PF01609 YP_890369.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_890370.1 identified by similarity to GP:150004; match to protein family HMM PF07929 YP_890371.1 identified by match to protein family HMM PF02627 YP_890372.1 identified by match to protein family HMM PF00561 YP_890373.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the subunit beta on the DNA YP_890374.1 identified by match to protein family HMM PF00211; match to protein family HMM PF00672 YP_890375.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_890376.1 identified by similarity to GP:150004; match to protein family HMM PF07929 YP_890377.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_890379.1 identified by match to protein family HMM PF00313 YP_890380.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_890381.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_890382.1 identified by similarity to GP:150004; match to protein family HMM PF07929 YP_890387.1 identified by match to protein family HMM PF00482 YP_890388.1 identified by match to protein family HMM PF00482 YP_890390.1 identified by match to protein family HMM PF00437 YP_890393.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_890394.1 identified by match to protein family HMM PF01614 YP_890395.1 identified by match to protein family HMM PF05035 YP_890396.1 identified by match to protein family HMM PF01081 YP_890397.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_890398.1 identified by match to protein family HMM PF07690 YP_890399.1 identified by match to protein family HMM PF00501; match to protein family HMM TIGR02188 YP_890402.1 identified by match to protein family HMM PF07332 YP_890403.1 identified by match to protein family HMM PF00561 YP_890404.1 identified by match to protein family HMM PF00089; match to protein family HMM PF02674 YP_890405.1 identified by match to protein family HMM PF00293 YP_890407.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_890409.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_890410.1 identified by match to protein family HMM PF00753 YP_890411.1 identified by match to protein family HMM PF01042 YP_890413.1 identified by match to protein family HMM PF02374 YP_890414.1 identified by match to protein family HMM PF02374 YP_890416.1 identified by match to protein family HMM PF00324; match to protein family HMM PF03845 YP_890417.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784 YP_890418.1 identified by match to protein family HMM PF02954 YP_890419.1 identified by match to protein family HMM PF02467 YP_890421.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF03793 YP_890422.1 identified by match to protein family HMM PF00149 YP_890423.1 identified by match to protein family HMM PF00291 YP_890425.1 identified by match to protein family HMM PF00069 YP_890427.1 identified by match to protein family HMM PF02551 YP_890432.1 identified by match to protein family HMM PF05067 YP_890433.1 identified by match to protein family HMM PF02637 YP_890434.1 identified by match to protein family HMM PF04402 YP_890438.1 identified by match to protein family HMM PF07726; match to protein family HMM PF07728 YP_890439.1 identified by match to protein family HMM PF01882 YP_890441.1 identified by match to protein family HMM PF06271 YP_890442.1 identified by match to protein family HMM PF00440 YP_890443.1 identified by match to protein family HMM PF07690 YP_890444.1 identified by match to protein family HMM PF03055 YP_890445.1 identified by match to protein family HMM PF03551 YP_890446.1 identified by match to protein family HMM PF03551 YP_890448.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP YP_890450.1 identified by match to protein family HMM PF01757 YP_890451.1 identified by similarity to SP:P26901; match to protein family HMM PF00199 YP_890454.1 identified by match to protein family HMM PF05724 YP_890456.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_890457.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_890458.1 identified by match to protein family HMM PF00465 YP_890459.1 identified by match to protein family HMM PF05762 YP_890460.1 identified by match to protein family HMM PF07728 YP_890461.1 identified by match to protein family HMM PF00465 YP_890462.1 identified by match to protein family HMM PF07080 YP_890463.1 identified by match to protein family HMM PF00440 YP_890464.1 identified by match to protein family HMM PF06779; match to protein family HMM PF07690 YP_890465.1 identified by match to protein family HMM PF00266 YP_890468.1 identified by match to protein family HMM PF03781 YP_890469.1 identified by match to protein family HMM PF04107 YP_890472.1 identified by match to protein family HMM PF01475 YP_890475.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_890476.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_890477.1 identified by match to protein family HMM PF00881 YP_890478.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836 YP_890479.1 identified by match to protein family HMM PF00120; match to protein family HMM TIGR03105 YP_890480.1 identified by match to protein family HMM PF00310 YP_890481.1 identified by match to protein family HMM PF01493 YP_890482.1 identified by match to protein family HMM PF01070; match to protein family HMM PF01180; match to protein family HMM PF01645 YP_890483.1 identified by match to protein family HMM PF01266 YP_890484.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_890486.1 identified by match to protein family HMM PF02979 YP_890488.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400 YP_890490.1 identified by match to protein family HMM PF00682; match to protein family HMM TIGR00970 YP_890491.1 identified by match to protein family HMM PF05088 YP_890494.1 3'-5' exonuclease of DNA polymerase III YP_890496.1 identified by match to protein family HMM PF07685 YP_890497.1 identified by match to protein family HMM PF00753 YP_890498.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_890499.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_890500.1 identified by match to protein family HMM PF01520 YP_890502.1 identified by match to protein family HMM PF01565 YP_890503.1 identified by match to protein family HMM PF02353 YP_890504.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_890505.1 identified by match to protein family HMM PF00155 YP_890507.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595 YP_890509.1 identified by match to protein family HMM PF01266 YP_890510.1 identified by match to protein family HMM PF01272 YP_890511.1 identified by match to protein family HMM PF00440 YP_890512.1 identified by match to protein family HMM PF02515 YP_890513.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_890514.1 identified by match to protein family HMM PF00107 YP_890515.1 identified by match to protein family HMM PF00171 YP_890516.1 identified by match to protein family HMM PF03328 YP_890517.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_890518.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_890519.1 identified by match to protein family HMM TIGR02778 YP_890520.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; in mycobacteria LigC has weak intrinsic nick joining activities and is not essential for growth YP_890521.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; in mycobacteria LigC has weak intrinsic nick joining activities and is not essential for growth YP_890522.1 identified by match to protein family HMM PF00135 YP_890524.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu YP_890525.1 identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_890526.1 identified by match to protein family HMM PF00005 YP_890528.1 identified by match to protein family HMM PF02550 YP_890529.1 identified by match to protein family HMM PF03435 YP_890530.1 identified by match to protein family HMM PF00067 YP_890531.1 identified by match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449 YP_890532.1 identified by match to protein family HMM PF05481 YP_890533.1 identified by match to protein family HMM PF00561 YP_890534.1 identified by match to protein family HMM PF05481 YP_890535.1 identified by match to protein family HMM PF00657 YP_890536.1 identified by match to protein family HMM PF00905; match to protein family HMM PF05223 YP_890539.1 identified by match to protein family HMM PF02286 YP_890540.1 identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946 YP_890542.1 identified by match to protein family HMM PF03098 YP_890543.1 identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026 YP_890544.1 identified by match to protein family HMM PF00383 YP_890546.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate YP_890547.1 identified by match to protein family HMM PF06475 YP_890548.1 identified by match to protein family HMM PF00528 YP_890549.1 identified by match to protein family HMM PF00528 YP_890550.1 identified by match to protein family HMM PF00005 YP_890551.1 identified by match to protein family HMM PF04069 YP_890554.1 identified by match to protein family HMM PF01636 YP_890555.1 identified by match to protein family HMM PF00300 YP_890556.1 identified by match to protein family HMM PF00106 YP_890557.1 identified by match to protein family HMM PF00753 YP_890558.1 identified by match to protein family HMM PF01210; match to protein family HMM PF03446; match to protein family HMM PF03807 YP_890559.1 identified by match to protein family HMM PF03446; match to protein family HMM PF03807 YP_890560.1 identified by match to protein family HMM PF01638 YP_890561.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_890566.1 identified by match to protein family HMM PF00155; match to protein family HMM TIGR01141 YP_890568.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_890569.1 identified by match to protein family HMM PF01083 YP_890571.1 identified by match to protein family HMM PF00165 YP_890574.1 identified by match to protein family HMM PF00089 YP_890575.1 identified by match to protein family HMM PF01047 YP_890576.1 identified by match to protein family HMM PF00107; match to protein family HMM TIGR02824 YP_890577.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR01976 YP_890579.1 identified by match to protein family HMM PF00005 YP_890580.1 identified by match to protein family HMM PF00535 YP_890581.1 identified by match to protein family HMM PF01061 YP_890583.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_890584.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_890585.1 identified by match to protein family HMM PF04138 YP_890586.1 identified by match to protein family HMM PF05853 YP_890587.1 identified by match to protein family HMM PF02558; match to protein family HMM PF03721; match to protein family HMM TIGR00745 YP_890588.1 identified by match to protein family HMM PF07690 YP_890589.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_890591.1 identified by match to protein family HMM PF03758 YP_890592.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_890594.1 identified by match to protein family HMM PF06259 YP_890595.1 identified by match to protein family HMM PF01565 YP_890596.1 identified by match to protein family HMM PF01475 YP_890597.1 identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198 YP_890598.1 identified by match to protein family HMM PF00106 YP_890600.1 identified by match to protein family HMM PF04602 YP_890601.1 identified by match to protein family HMM PF04602 YP_890602.1 identified by match to protein family HMM PF04602 YP_890603.1 identified by match to protein family HMM PF05977; match to protein family HMM PF07690 YP_890604.1 identified by match to protein family HMM PF01039 YP_890605.1 identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801 YP_890606.1 activates fatty acids by binding to coenzyme A YP_890609.1 identified by match to protein family HMM PF00756 YP_890611.1 identified by match to protein family HMM PF00756 YP_890612.1 identified by match to protein family HMM PF00756 YP_890614.1 catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate YP_890615.1 identified by match to protein family HMM PF01569 YP_890617.1 identified by match to protein family HMM PF03275; match to protein family HMM TIGR00031 YP_890619.1 identified by match to protein family HMM PF01510 YP_890620.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_890621.1 identified by match to protein family HMM PF01553 YP_890622.1 identified by match to protein family HMM PF01553 YP_890623.1 identified by match to protein family HMM PF00355 YP_890626.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_890628.1 identified by match to protein family HMM PF06262 YP_890630.1 identified by match to protein family HMM PF00300 YP_890631.1 catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis YP_890633.1 identified by match to protein family HMM PF02517 YP_890634.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_890635.1 identified by match to protein family HMM PF00210 YP_890636.1 identified by match to protein family HMM PF03009 YP_890638.1 identified by match to protein family HMM PF00581 YP_890640.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777 YP_890649.1 identified by match to protein family HMM PF04234 YP_890650.1 identified by match to protein family HMM PF05425 YP_890652.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_890654.1 identified by match to protein family HMM PF00440 YP_890655.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_890658.1 identified by match to protein family HMM PF02811 YP_890664.1 identified by match to protein family HMM PF01022 YP_890665.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740 YP_890666.1 identified by match to protein family HMM PF00171 YP_890667.1 identified by match to protein family HMM PF00296 YP_890670.1 identified by match to protein family HMM PF00174 YP_890671.1 glutamate synthase is composed of subunits alpha and beta; subunit beta is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the subunit alpha, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_890672.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898 YP_890675.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_890676.1 identified by similarity to GP:150004; match to protein family HMM PF07929 YP_890677.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_890678.1 identified by match to protein family HMM PF00654 YP_890679.1 identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861 YP_890680.1 identified by match to protein family HMM PF00210 YP_890682.1 identified by match to protein family HMM PF04248 YP_890684.1 identified by match to protein family HMM PF01266 YP_890686.1 identified by match to protein family HMM PF02409 YP_890687.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993 YP_890690.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress YP_890691.1 identified by match to protein family HMM PF00067 YP_890692.1 identified by match to protein family HMM PF00440 YP_890693.1 identified by match to protein family HMM PF00440 YP_890697.1 identified by match to protein family HMM PF00534 YP_890698.1 identified by match to protein family HMM PF01243 YP_890699.1 identified by match to protein family HMM PF00724 YP_890700.1 identified by match to protein family HMM PF04909 YP_890702.1 identified by match to protein family HMM PF01494 YP_890703.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_890704.1 identified by match to protein family HMM PF00171 YP_890705.1 identified by match to protein family HMM PF01590 YP_890707.1 identified by match to protein family HMM PF00528 YP_890708.1 identified by match to protein family HMM PF00528 YP_890709.1 identified by match to protein family HMM PF00005 YP_890712.1 identified by match to protein family HMM PF04248 YP_890717.1 identified by match to protein family HMM PF00440 YP_890718.1 identified by match to protein family HMM PF00881 YP_890719.1 identified by match to protein family HMM PF00857 YP_890720.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100 YP_890721.1 identified by match to protein family HMM PF01047; match to protein family HMM PF03965 YP_890722.1 identified by match to protein family HMM PF00005 YP_890723.1 identified by match to protein family HMM PF01061 YP_890724.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_890725.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_890726.1 identified by match to protein family HMM PF07690 YP_890728.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02456 YP_890732.1 identified by match to protein family HMM PF01243 YP_890733.1 identified by match to protein family HMM PF00156 YP_890734.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459 YP_890735.1 identified by match to protein family HMM PF00528 YP_890736.1 identified by match to protein family HMM PF00528 YP_890739.1 identified by match to protein family HMM PF01243 YP_890740.1 identified by match to protein family HMM PF00440 YP_890743.1 identified by match to protein family HMM PF00510 YP_890745.1 identified by match to protein family HMM PF00440 YP_890748.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_890749.1 identified by match to protein family HMM PF02627 YP_890750.1 identified by match to protein family HMM PF00440 YP_890751.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_890752.1 identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996 YP_890754.1 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377 YP_890755.1 identified by match to protein family HMM PF02310 YP_890757.1 identified by match to protein family HMM PF00300 YP_890758.1 identified by match to protein family HMM PF00165 YP_890759.1 identified by match to protein family HMM PF04909 YP_890760.1 identified by match to protein family HMM PF00355 YP_890765.1 identified by match to protein family HMM PF00005 YP_890766.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00970; match to protein family HMM PF04954; match to protein family HMM PF08021 YP_890768.1 identified by match to protein family HMM PF00440 YP_890769.1 identified by match to protein family HMM PF00378 YP_890770.1 identified by match to protein family HMM PF00106 YP_890772.1 identified by match to protein family HMM PF01796 YP_890774.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_890775.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_890776.1 identified by match to protein family HMM PF00440 YP_890779.1 identified by match to protein family HMM PF00196 YP_890780.1 identified by match to protein family HMM PF04261; match to protein family HMM TIGR01409; match to protein family HMM TIGR01413 YP_890781.1 identified by match to protein family HMM PF04314 YP_890782.1 identified by match to protein family HMM PF03413; match to protein family HMM PF03929 YP_890785.1 identified by match to protein family HMM PF02720 YP_890787.1 identified by match to protein family HMM PF00144 YP_890788.1 identified by match to protein family HMM PF01243 YP_890789.1 identified by match to protein family HMM PF01039 YP_890792.1 identified by match to protein family HMM PF01638 YP_890793.1 identified by match to protein family HMM PF00106 YP_890794.1 identified by match to protein family HMM PF00756 YP_890795.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_890796.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_890797.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_890798.1 identified by match to protein family HMM PF00561 YP_890799.1 identified by match to protein family HMM PF01557 YP_890800.1 identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717; match to protein family HMM TIGR01967 YP_890801.1 identified by similarity to GB:CAD18826.1 YP_890803.1 identified by match to protein family HMM PF00106 YP_890804.1 identified by match to protein family HMM PF00266 YP_890805.1 identified by match to protein family HMM PF00005 YP_890806.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_890807.1 identified by match to protein family HMM PF00497 YP_890810.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; subunit beta of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_890811.1 identified by match to protein family HMM PF00665 YP_890813.1 identified by match to protein family HMM PF00296 YP_890815.1 identified by match to protein family HMM PF03551 YP_890816.1 identified by match to protein family HMM PF00440 YP_890823.1 identified by match to protein family HMM PF07726; match to protein family HMM PF07728 YP_890825.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR01409 YP_890827.1 identified by match to protein family HMM PF00107 YP_890828.1 identified by match to protein family HMM PF00293 YP_890830.1 identified by match to protein family HMM PF00296 YP_890831.1 identified by match to protein family HMM PF00067 YP_890832.1 identified by match to protein family HMM PF00106 YP_890834.1 identified by match to protein family HMM PF00903 YP_890835.1 identified by match to protein family HMM PF00106 YP_890836.1 identified by match to protein family HMM PF00881 YP_890837.1 identified by match to protein family HMM PF00440 YP_890838.1 identified by match to protein family HMM PF00903 YP_890839.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR03131 YP_890840.1 Catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein YP_890841.1 identified by match to protein family HMM PF01039; match to protein family HMM PF06833; match to protein family HMM TIGR03133; match to protein family HMM TIGR03134 YP_890842.1 identified by match to protein family HMM PF06857; match to protein family HMM TIGR03130 YP_890843.1 identified by match to protein family HMM PF01874; match to protein family HMM TIGR03132 YP_890845.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777 YP_890847.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_890848.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_890851.1 identified by match to protein family HMM PF02515 YP_890852.1 identified by match to protein family HMM PF03328 YP_890853.1 identified by match to protein family HMM PF01381; match to protein family HMM PF06114 YP_890854.1 identified by match to protein family HMM PF03972 YP_890855.1 identified by similarity to SP:Q8NSL2; match to protein family HMM TIGR02317 YP_890856.1 catalyzes the formation of citrate from acetyl-CoA and oxaloacetate YP_890857.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate YP_890862.1 identified by match to protein family HMM PF01609 YP_890864.1 identified by match to protein family HMM PF02899 YP_890866.1 identified by match to protein family HMM PF00561 YP_890867.1 identified by match to protein family HMM PF02133 YP_890869.1 identified by match to protein family HMM PF02409 YP_890870.1 identified by match to protein family HMM PF00106 YP_890872.1 identified by match to protein family HMM PF02219 YP_890877.1 identified by match to protein family HMM PF00528 YP_890878.1 identified by match to protein family HMM PF00528 YP_890879.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459 YP_890880.1 identified by match to protein family HMM PF01663 YP_890881.1 identified by match to protein family HMM PF01425 YP_890882.1 identified by similarity to SP:P18561; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_890886.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_890887.1 identified by match to protein family HMM PF00753 YP_890888.1 identified by match to protein family HMM PF04224 YP_890890.1 identified by match to protein family HMM TIGR02937 YP_890891.1 identified by match to protein family HMM PF00578 YP_890893.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR00700 YP_890894.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_890895.1 identified by match to protein family HMM PF00171 YP_890896.1 identified by match to protein family HMM PF02515 YP_890897.1 identified by match to protein family HMM PF07905 YP_890898.1 identified by match to protein family HMM PF00117; match to protein family HMM PF07722 YP_890899.1 identified by match to protein family HMM PF00117; match to protein family HMM PF07722 YP_890900.1 identified by match to protein family HMM PF00497 YP_890901.1 identified by match to protein family HMM PF00120 YP_890903.1 identified by match to protein family HMM PF00067 YP_890905.1 identified by similarity to GP:150005; match to protein family HMM PF01610 YP_890906.1 identified by similarity to GP:150004; match to protein family HMM PF07929 YP_890908.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_890909.1 identified by match to protein family HMM PF00324 YP_890910.1 identified by match to protein family HMM PF00171 YP_890912.1 identified by match to protein family HMM PF01614 YP_890913.1 identified by match to protein family HMM PF01488 YP_890916.1 identified by match to protein family HMM PF00561 YP_890917.1 identified by match to protein family HMM PF00106 YP_890918.1 identified by match to protein family HMM PF00561 YP_890919.1 identified by match to protein family HMM PF00083; match to protein family HMM PF06779; match to protein family HMM PF07690 YP_890920.1 identified by match to protein family HMM PF00465 YP_890921.1 identified by match to protein family HMM PF00775; match to protein family HMM PF04444 YP_890923.1 identified by match to protein family HMM PF01261 YP_890924.1 identified by match to protein family HMM PF01261 YP_890925.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_890926.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_890927.1 identified by match to protein family HMM PF00561 YP_890928.1 identified by match to protein family HMM PF00561 YP_890932.1 identified by match to protein family HMM PF02361 YP_890933.1 identified by match to protein family HMM PF00005 YP_890935.1 identified by match to protein family HMM PF00324 YP_890937.1 identified by match to protein family HMM PF00248 YP_890939.1 identified by match to protein family HMM PF00440 YP_890941.1 identified by match to protein family HMM PF00795 YP_890943.1 identified by match to protein family HMM PF00324 YP_890944.1 identified by match to protein family HMM PF00356 YP_890946.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_890948.1 catalyzes conversion of 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketobutyrate YP_890949.1 identified by match to protein family HMM PF03861 YP_890950.1 identified by match to protein family HMM PF07336 YP_890951.1 identified by match to protein family HMM PF00903 YP_890952.1 identified by match to protein family HMM PF01243 YP_890953.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_890954.1 identified by match to protein family HMM PF00248 YP_890955.1 identified by match to protein family HMM PF00107 YP_890956.1 identified by match to protein family HMM PF00005 YP_890960.1 identified by match to protein family HMM PF01341 YP_890961.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_890962.1 identified by match to protein family HMM PF01575 YP_890963.1 identified by match to protein family HMM PF05368 YP_890964.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311 YP_890965.1 identified by match to protein family HMM PF01614 YP_890966.1 identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861 YP_890967.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP YP_890968.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494 YP_890970.1 identified by match to protein family HMM PF01022 YP_890971.1 identified by match to protein family HMM PF00561 YP_890972.1 identified by match to protein family HMM PF00440 YP_890973.1 identified by match to protein family HMM PF01061 YP_890974.1 identified by match to protein family HMM PF00005 YP_890975.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801 YP_890976.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04820 YP_890977.1 identified by match to protein family HMM PF00999 YP_890980.1 identified by match to protein family HMM PF00561 YP_890981.1 identified by match to protein family HMM PF02515 YP_890982.1 identified by match to protein family HMM PF00378 YP_890983.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_890984.1 identified by similarity to SP:P32064; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_890985.1 identified by match to protein family HMM PF00378 YP_890987.1 identified by match to protein family HMM TIGR03083 YP_890988.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_890992.1 identified by match to protein family HMM PF00144 YP_890994.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_890995.1 identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR02133 YP_890996.1 in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone YP_890997.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_890998.1 identified by match to protein family HMM PF01261 YP_890999.1 identified by match to protein family HMM PF00725; match to protein family HMM PF01210; match to protein family HMM PF02737; match to protein family HMM PF03446 YP_891000.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00791 YP_891002.1 identified by match to protein family HMM PF01381 YP_891003.1 identified by match to protein family HMM PF00378 YP_891005.1 identified by match to protein family HMM PF02627 YP_891006.1 identified by similarity to SP:P25551; match to protein family HMM PF00356; match to protein family HMM PF00532 YP_891008.1 identified by match to protein family HMM PF00294 YP_891009.1 identified by match to protein family HMM PF00005 YP_891010.1 identified by match to protein family HMM PF02653 YP_891011.1 identified by match to protein family HMM PF00532 YP_891012.1 identified by match to protein family HMM PF00144 YP_891013.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630 YP_891014.1 identified by match to protein family HMM PF00440 YP_891016.1 identified by match to protein family HMM PF07728 YP_891018.1 identified by match to protein family HMM PF04909 YP_891019.1 identified by match to protein family HMM PF01047 YP_891020.1 identified by match to protein family HMM TIGR01409 YP_891021.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_891022.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_891023.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_891024.1 identified by match to protein family HMM PF01975; match to protein family HMM TIGR00087 YP_891026.1 identified by match to protein family HMM PF00144 YP_891027.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_891028.1 identified by match to protein family HMM PF01047 YP_891029.1 identified by match to protein family HMM PF02517 YP_891030.1 identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795 YP_891032.1 identified by match to protein family HMM PF00196 YP_891033.1 identified by match to protein family HMM PF01638 YP_891035.1 identified by match to protein family HMM PF00561 YP_891036.1 identified by match to protein family HMM TIGR03083; match to protein family HMM TIGR03086 YP_891037.1 identified by match to protein family HMM PF00107 YP_891038.1 identified by match to protein family HMM PF00107 YP_891039.1 identified by match to protein family HMM PF00487 YP_891040.1 identified by match to protein family HMM PF00111 YP_891042.1 catalyzes the cleavage of carbon-halogen bonds in aliphatic compounds forming a primary alcohol and a halide YP_891043.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_891044.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_891046.1 identified by match to protein family HMM PF00202 YP_891047.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993 YP_891048.1 identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787; match to protein family HMM TIGR01409 YP_891049.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_891050.1 identified by match to protein family HMM PF04290 YP_891052.1 identified by match to protein family HMM PF01243 YP_891053.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_891055.1 identified by match to protein family HMM PF07859 YP_891056.1 identified by match to protein family HMM PF01161 YP_891057.1 identified by match to protein family HMM PF00694; match to protein family HMM TIGR02087 YP_891058.1 identified by match to protein family HMM PF00330; match to protein family HMM TIGR01343 YP_891060.1 identified by match to protein family HMM PF03972 YP_891061.1 identified by match to protein family HMM PF01614 YP_891062.1 identified by match to protein family HMM PF00561; match to protein family HMM PF06441 YP_891063.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_891065.1 identified by match to protein family HMM PF07883 YP_891066.1 identified by match to protein family HMM PF00440 YP_891067.1 identified by match to protein family HMM PF00596 YP_891069.1 identified by match to protein family HMM PF00496; match to protein family HMM TIGR01409 YP_891070.1 identified by match to protein family HMM PF00528 YP_891071.1 identified by match to protein family HMM PF00528 YP_891072.1 identified by match to protein family HMM PF00480 YP_891073.1 identified by match to protein family HMM PF02633 YP_891074.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_891075.1 identified by match to protein family HMM PF00144 YP_891076.1 identified by match to protein family HMM PF00171 YP_891077.1 identified by match to protein family HMM PF01042 YP_891078.1 identified by match to protein family HMM PF00005 YP_891079.1 identified by match to protein family HMM PF00005 YP_891080.1 identified by match to protein family HMM PF02653 YP_891081.1 identified by match to protein family HMM PF02653 YP_891082.1 identified by match to protein family HMM PF01094 YP_891083.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_891084.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_891085.1 identified by match to protein family HMM PF03807 YP_891087.1 identified by match to protein family HMM PF01638 YP_891088.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_891089.1 identified by match to protein family HMM PF00665 YP_891090.1 identified by match to protein family HMM PF01527 YP_891091.1 identified by match to protein family HMM PF03992 YP_891092.1 identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR01443; match to protein family HMM TIGR01445 YP_891094.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_891095.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_891096.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_891097.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_891100.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912 YP_891102.1 identified by match to protein family HMM PF08044 YP_891103.1 identified by match to protein family HMM PF03551 YP_891104.1 identified by match to protein family HMM PF01658; match to protein family HMM PF07994 YP_891105.1 identified by match to protein family HMM PF00561 YP_891107.1 identified by match to protein family HMM PF00392 YP_891108.1 identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_891109.1 identified by match to protein family HMM PF00005 YP_891110.1 identified by match to protein family HMM PF01047 YP_891112.1 identified by match to protein family HMM PF00106 YP_891113.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_891116.1 identified by match to protein family HMM PF02622 YP_891117.1 identified by match to protein family HMM PF07690 YP_891118.1 identified by match to protein family HMM TIGR03083; match to protein family HMM TIGR03084 YP_891120.1 identified by match to protein family HMM PF01743; match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR02692 YP_891121.1 identified by match to protein family HMM PF00293 YP_891123.1 identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695 YP_891124.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_891127.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292 YP_891128.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_891129.1 identified by match to protein family HMM PF01471; match to protein family HMM PF01520 YP_891131.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_891132.1 identified by match to protein family HMM PF01656 YP_891133.1 identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138 YP_891134.1 identified by match to protein family HMM PF01424 YP_891135.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_891136.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278 YP_891137.1 identified by match to protein family HMM PF00825; match to protein family HMM TIGR00188 YP_891138.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_891139.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.