-- dump date 20140619_153728 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 246196000001 SEQ_END SEQ_END NC_008596.1 6988209 6988209 DR NC_008596.1; contig end 6988209..6988209 Mycobacterium smegmatis str. MC2 155 YP_884424.1 CDS dnaN NC_008596.1 499 1692 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 499..1692 Mycobacterium smegmatis str. MC2 155 4535615 YP_884425.1 CDS MSMEG_0002 NC_008596.1 1721 2614 D similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase 1721..2614 Mycobacterium smegmatis str. MC2 155 4536178 YP_884426.1 CDS recF NC_008596.1 2624 3778 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 2624..3778 Mycobacterium smegmatis str. MC2 155 4532650 YP_884427.1 CDS MSMEG_0004 NC_008596.1 3775 4359 D RecF-gyrB intergenic region protein; identified by match to protein family HMM PF05258; hypothetical protein 3775..4359 Mycobacterium smegmatis str. MC2 155 4537198 YP_884428.1 CDS gyrB NC_008596.1 4591 6618 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 4591..6618 Mycobacterium smegmatis str. MC2 155 4531510 YP_884429.1 CDS gyrA NC_008596.1 6648 9176 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 6648..9176 Mycobacterium smegmatis str. MC2 155 4535988 YP_884430.1 CDS MSMEG_0007 NC_008596.1 9229 10011 D hypothetical protein 9229..10011 Mycobacterium smegmatis str. MC2 155 4533293 YP_884431.1 CDS MSMEG_0009 NC_008596.1 10184 10276 D hypothetical protein 10184..10276 Mycobacterium smegmatis str. MC2 155 4535541 YP_884432.1 CDS MSMEG_0011 NC_008596.1 10411 11211 D identified by match to protein family HMM PF04954; match to protein family HMM PF08021; hypothetical protein 10411..11211 Mycobacterium smegmatis str. MC2 155 4531499 YP_884433.1 CDS MSMEG_0012 NC_008596.1 11215 12246 D identified by match to protein family HMM PF01032; ferric enterobactin transporter permease FepD 11215..12246 Mycobacterium smegmatis str. MC2 155 4531265 YP_884434.1 CDS MSMEG_0015 NC_008596.1 13310 14140 D identified by match to protein family HMM PF00005; ferric enterobactin transport ATP-binding protein FepC 13310..14140 Mycobacterium smegmatis str. MC2 155 4532202 YP_884435.1 CDS MSMEG_0014 NC_008596.1 14130 15098 R identified by match to protein family HMM PF00551; match to protein family HMM PF02911; Formyl transferase complement(14130..15098) Mycobacterium smegmatis str. MC2 155 4532530 YP_884436.1 CDS MSMEG_0016 NC_008596.1 15256 15522 D identified by match to protein family HMM PF03621; hypothetical protein 15256..15522 Mycobacterium smegmatis str. MC2 155 4537603 YP_884437.1 CDS MSMEG_0017 NC_008596.1 15525 17252 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease 15525..17252 Mycobacterium smegmatis str. MC2 155 4531597 YP_884438.1 CDS MSMEG_0018 NC_008596.1 17249 19018 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease 17249..19018 Mycobacterium smegmatis str. MC2 155 4534027 YP_884439.1 CDS MSMEG_0019 NC_008596.1 19052 41623 D identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733; amino acid adenylation protein 19052..41623 Mycobacterium smegmatis str. MC2 155 4533906 YP_884440.1 CDS MSMEG_0020 NC_008596.1 41689 42636 R identified by match to protein family HMM PF01497; periplasmic binding protein complement(41689..42636) Mycobacterium smegmatis str. MC2 155 4537245 YP_884441.1 CDS panD NC_008596.1 42944 43354 D Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 42944..43354 Mycobacterium smegmatis str. MC2 155 4531073 YP_884442.1 CDS MSMEG_0022 NC_008596.1 43366 44688 D L-ornithine 5-monooxygenase 43366..44688 Mycobacterium smegmatis str. MC2 155 4534987 YP_884443.1 CDS MSMEG_0023 NC_008596.1 44692 45102 R hypothetical protein complement(44692..45102) Mycobacterium smegmatis str. MC2 155 4531759 YP_884444.1 CDS MSMEG_0024 NC_008596.1 45223 45750 D identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase B 45223..45750 Mycobacterium smegmatis str. MC2 155 4535580 YP_884445.1 CDS MSMEG_0025 NC_008596.1 45854 46261 R hypothetical protein complement(45854..46261) Mycobacterium smegmatis str. MC2 155 4536577 YP_884446.1 CDS MSMEG_0026 NC_008596.1 46417 46701 R integral membrane protein involved in inhibition of the Z-ring formation; septation inhibitor protein complement(46417..46701) Mycobacterium smegmatis str. MC2 155 4537226 YP_884447.1 CDS MSMEG_0027 NC_008596.1 46797 47546 D identified by match to protein family HMM PF05949; hypothetical protein 46797..47546 Mycobacterium smegmatis str. MC2 155 4535791 YP_884448.1 CDS MSMEG_0029 NC_008596.1 47564 48238 D aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity; para-aminobenzoate synthase component II 47564..48238 Mycobacterium smegmatis str. MC2 155 4532866 YP_884449.1 CDS MSMEG_0028 NC_008596.1 48216 50093 R identified by match to protein family HMM PF00069; match to protein family HMM PF03793; serine-threonine protein kinase complement(48216..50093) Mycobacterium smegmatis str. MC2 155 4536298 YP_884450.1 CDS pknA NC_008596.1 50090 51349 R identified by match to protein family HMM PF00069; serine/threonine protein kinase complement(50090..51349) Mycobacterium smegmatis str. MC2 155 4531207 YP_884451.1 CDS MSMEG_0031 NC_008596.1 51381 52856 R identified by match to protein family HMM PF00905; penicillin binding protein transpeptidase domain-containing protein complement(51381..52856) Mycobacterium smegmatis str. MC2 155 4530882 YP_884452.1 CDS MSMEG_0032 NC_008596.1 52853 54268 R identified by match to protein family HMM PF01098; cell cycle protein, FtsW/RodA/SpoVE family protein complement(52853..54268) Mycobacterium smegmatis str. MC2 155 4533758 YP_884453.1 CDS MSMEG_0033 NC_008596.1 54265 55803 R identified by match to protein family HMM PF00481; protein phosphatase 2C complement(54265..55803) Mycobacterium smegmatis str. MC2 155 4534494 YP_884454.1 CDS MSMEG_0034 NC_008596.1 55826 56293 R identified by match to protein family HMM PF00498; FHA domain-containing protein complement(55826..56293) Mycobacterium smegmatis str. MC2 155 4531676 YP_884455.1 CDS MSMEG_0035 NC_008596.1 56429 57892 R identified by match to protein family HMM PF00498; FHA domain-containing protein complement(56429..57892) Mycobacterium smegmatis str. MC2 155 4536357 YP_884456.1 CDS MSMEG_0036 NC_008596.1 58033 58140 R hypothetical protein complement(58033..58140) Mycobacterium smegmatis str. MC2 155 4532875 YP_884457.1 CDS MSMEG_0039 NC_008596.1 58655 59029 R small membrane hydrophobic protein complement(58655..59029) Mycobacterium smegmatis str. MC2 155 4535298 YP_884458.1 CDS MSMEG_0040 NC_008596.1 59041 59346 R hypothetical protein complement(59041..59346) Mycobacterium smegmatis str. MC2 155 4536821 YP_884459.1 CDS MSMEG_0041 NC_008596.1 59348 59824 R hypothetical protein complement(59348..59824) Mycobacterium smegmatis str. MC2 155 4533701 YP_884460.1 CDS MSMEG_0042 NC_008596.1 59900 60463 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 59900..60463 Mycobacterium smegmatis str. MC2 155 4535514 YP_884461.1 CDS MSMEG_0043 NC_008596.1 60479 61303 R identified by match to protein family HMM PF02900; extradiol ring-cleavage dioxygenase, class III enzyme, subunit B complement(60479..61303) Mycobacterium smegmatis str. MC2 155 4537348 YP_884462.1 CDS MSMEG_0044 NC_008596.1 61470 63548 D hypothetical protein 61470..63548 Mycobacterium smegmatis str. MC2 155 4531639 YP_884463.1 CDS MSMEG_0045 NC_008596.1 63545 66013 D hypothetical protein 63545..66013 Mycobacterium smegmatis str. MC2 155 4534323 YP_884464.1 CDS MSMEG_0046 NC_008596.1 66010 67167 D hypothetical protein 66010..67167 Mycobacterium smegmatis str. MC2 155 4534000 YP_884465.1 CDS MSMEG_0047 NC_008596.1 67182 68117 R hypothetical protein complement(67182..68117) Mycobacterium smegmatis str. MC2 155 4536994 YP_884466.1 CDS MSMEG_0048 NC_008596.1 68264 68767 D identified by match to protein family HMM PF01243; pyridoxamine 5'-phosphate oxidase 68264..68767 Mycobacterium smegmatis str. MC2 155 4536420 YP_884467.1 CDS MSMEG_0049 NC_008596.1 68769 69734 R identified by match to protein family HMM PF02678; match to protein family HMM PF05726; pirin complement(68769..69734) Mycobacterium smegmatis str. MC2 155 4537070 YP_884468.1 CDS MSMEG_0050 NC_008596.1 69779 70045 D hypothetical protein 69779..70045 Mycobacterium smegmatis str. MC2 155 4534274 YP_884469.1 CDS MSMEG_0051 NC_008596.1 70234 70527 R identified by match to protein family HMM PF02467; transcription factor WhiB family protein complement(70234..70527) Mycobacterium smegmatis str. MC2 155 4533195 YP_884470.1 CDS MSMEG_0052 NC_008596.1 70911 71690 D hypothetical protein 70911..71690 Mycobacterium smegmatis str. MC2 155 4536937 YP_884471.1 CDS MSMEG_0054 NC_008596.1 71738 72823 D identified by similarity to GB:CAD18826.1; ISMsm2, transposase 71738..72823 Mycobacterium smegmatis str. MC2 155 4533735 YP_884472.1 CDS MSMEG_0053 NC_008596.1 72820 74208 R hypothetical protein complement(72820..74208) Mycobacterium smegmatis str. MC2 155 4536441 YP_884473.1 CDS MSMEG_0055 NC_008596.1 74600 76177 D hypothetical protein 74600..76177 Mycobacterium smegmatis str. MC2 155 4535365 YP_884474.1 CDS MSMEG_0056 NC_008596.1 76213 76530 D hypothetical protein 76213..76530 Mycobacterium smegmatis str. MC2 155 4535566 YP_884475.1 CDS MSMEG_0057 NC_008596.1 76535 77383 D hypothetical protein 76535..77383 Mycobacterium smegmatis str. MC2 155 4531357 YP_884476.1 CDS MSMEG_0058 NC_008596.1 77398 77925 D hypothetical protein 77398..77925 Mycobacterium smegmatis str. MC2 155 4532540 YP_884477.1 CDS MSMEG_0059 NC_008596.1 77918 79642 D identified by match to protein family HMM PF00004; ATPase AAA 77918..79642 Mycobacterium smegmatis str. MC2 155 4532911 YP_884478.1 CDS MSMEG_0060 NC_008596.1 79650 81089 D identified by match to protein family HMM PF05108; hypothetical protein 79650..81089 Mycobacterium smegmatis str. MC2 155 4537565 YP_884479.1 CDS MSMEG_0061 NC_008596.1 81089 83317 D identified by match to protein family HMM PF01580; ftsk/SpoIIIE family protein 81089..83317 Mycobacterium smegmatis str. MC2 155 4532900 YP_884480.1 CDS MSMEG_0062 NC_008596.1 83318 85099 D identified by match to protein family HMM PF01580; ftsk/SpoIIIE family protein 83318..85099 Mycobacterium smegmatis str. MC2 155 4534286 YP_884481.1 CDS MSMEG_0063 NC_008596.1 85248 85541 D PE family protein 85248..85541 Mycobacterium smegmatis str. MC2 155 4534995 YP_884482.1 CDS MSMEG_0064 NC_008596.1 85616 86911 D identified by match to protein family HMM PF00823; PPE family protein 85616..86911 Mycobacterium smegmatis str. MC2 155 4532706 YP_884483.1 CDS MSMEG_0065 NC_008596.1 86997 87299 D hypothetical protein 86997..87299 Mycobacterium smegmatis str. MC2 155 4537352 YP_884484.1 CDS MSMEG_0066 NC_008596.1 87331 87618 D early secretory antigenic target, 6 kDa 87331..87618 Mycobacterium smegmatis str. MC2 155 4536621 YP_884485.1 CDS MSMEG_0067 NC_008596.1 87738 89162 D hypothetical protein 87738..89162 Mycobacterium smegmatis str. MC2 155 4534233 YP_884486.1 CDS MSMEG_0068 NC_008596.1 89159 90691 D identified by match to protein family HMM PF04600; match to protein family HMM TIGR02958; transmembrane protein 89159..90691 Mycobacterium smegmatis str. MC2 155 4536592 YP_884487.1 CDS MSMEG_0069 NC_008596.1 91173 91874 D translation initiation factor IF-2 91173..91874 Mycobacterium smegmatis str. MC2 155 4534696 YP_884488.1 CDS MSMEG_0070 NC_008596.1 92737 93072 D hypothetical protein 92737..93072 Mycobacterium smegmatis str. MC2 155 4535602 YP_884489.1 CDS MSMEG_0071 NC_008596.1 93072 95339 D hypothetical protein 93072..95339 Mycobacterium smegmatis str. MC2 155 4534998 YP_884490.1 CDS MSMEG_0074 NC_008596.1 96469 97935 D identified by similarity to GP:2935133; match to protein family HMM PF01609; IS1549, transposase 96469..97935 Mycobacterium smegmatis str. MC2 155 4532456 YP_884491.1 CDS MSMEG_0075 NC_008596.1 99229 99585 D hypothetical protein 99229..99585 Mycobacterium smegmatis str. MC2 155 4536501 YP_884492.1 CDS MSMEG_0076 NC_008596.1 99798 101360 D antigen MTB48 99798..101360 Mycobacterium smegmatis str. MC2 155 4533442 YP_884493.1 CDS MSMEG_0077 NC_008596.1 101776 102093 R hypothetical protein complement(101776..102093) Mycobacterium smegmatis str. MC2 155 4534935 YP_884494.1 CDS MSMEG_0078 NC_008596.1 102127 102702 R hypothetical protein complement(102127..102702) Mycobacterium smegmatis str. MC2 155 4534871 YP_884495.1 CDS MSMEG_0079 NC_008596.1 102936 103682 R hypothetical protein complement(102936..103682) Mycobacterium smegmatis str. MC2 155 4534583 YP_884496.1 CDS MSMEG_0080 NC_008596.1 103713 104243 R hypothetical protein complement(103713..104243) Mycobacterium smegmatis str. MC2 155 4534290 YP_884497.1 CDS MSMEG_0081 NC_008596.1 104251 104583 R hypothetical protein complement(104251..104583) Mycobacterium smegmatis str. MC2 155 4537282 YP_884498.1 CDS MSMEG_0082 NC_008596.1 104594 105988 R hypothetical protein complement(104594..105988) Mycobacterium smegmatis str. MC2 155 4535596 YP_884499.1 CDS MSMEG_0083 NC_008596.1 105985 107334 R identified by match to protein family HMM PF00082; membrane-anchored mycosin mycp1 complement(105985..107334) Mycobacterium smegmatis str. MC2 155 4531254 YP_884500.1 CDS MSMEG_0084 NC_008596.1 107565 107822 R identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphocarrier protein HPr complement(107565..107822) Mycobacterium smegmatis str. MC2 155 4532872 YP_884501.1 CDS MSMEG_0085 NC_008596.1 107834 109849 R identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427; PTS system, Fru family protein, IIABC components complement(107834..109849) Mycobacterium smegmatis str. MC2 155 4533992 YP_884502.1 CDS MSMEG_0086 NC_008596.1 109846 110829 R identified by match to protein family HMM PF00294; 1-phosphofructokinase complement(109846..110829) Mycobacterium smegmatis str. MC2 155 4537655 YP_884503.1 CDS MSMEG_0087 NC_008596.1 110826 111593 R identified by match to protein family HMM PF00455; match to protein family HMM PF08220; glucitol operon repressor complement(110826..111593) Mycobacterium smegmatis str. MC2 155 4535307 YP_884504.1 CDS ptsI NC_008596.1 111735 113369 D identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; phosphoenolpyruvate-protein phosphotransferase 111735..113369 Mycobacterium smegmatis str. MC2 155 4533147 YP_884505.1 CDS MSMEG_0089 NC_008596.1 113433 114407 D identified by match to protein family HMM PF02678; match to protein family HMM PF05726; chromosome condensation protein 113433..114407 Mycobacterium smegmatis str. MC2 155 4533128 YP_884506.1 CDS MSMEG_0090 NC_008596.1 114447 116594 R hypothetical protein complement(114447..116594) Mycobacterium smegmatis str. MC2 155 4531487 YP_884507.1 CDS MSMEG_0091 NC_008596.1 116600 117193 R transcriptional regulator complement(116600..117193) Mycobacterium smegmatis str. MC2 155 4536176 YP_884508.1 CDS MSMEG_0092 NC_008596.1 117306 117941 D identified by match to protein family HMM PF00440; transcriptional regulatory protein 117306..117941 Mycobacterium smegmatis str. MC2 155 4533383 YP_884509.1 CDS MSMEG_0093 NC_008596.1 118003 118965 D identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027; methyltransferase 118003..118965 Mycobacterium smegmatis str. MC2 155 4531398 YP_884510.1 CDS MSMEG_0095 NC_008596.1 118962 119897 D identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027; methyltransferase 118962..119897 Mycobacterium smegmatis str. MC2 155 4531416 YP_884511.1 CDS MSMEG_0094 NC_008596.1 119878 120057 R hypothetical protein complement(119878..120057) Mycobacterium smegmatis str. MC2 155 4533594 YP_884512.1 CDS MSMEG_0096 NC_008596.1 120261 121115 D identified by match to protein family HMM PF00106; peroxisomal hydratase-dehydrogenase-epimerase 120261..121115 Mycobacterium smegmatis str. MC2 155 4533910 YP_884513.1 CDS MSMEG_0097 NC_008596.1 121119 122084 D identified by match to protein family HMM PF00107; oxidoreductase, zinc-binding dehydrogenase 121119..122084 Mycobacterium smegmatis str. MC2 155 4535982 YP_884514.1 CDS MSMEG_0098 NC_008596.1 122105 122818 D identified by match to protein family HMM PF01209; methyltransferase 122105..122818 Mycobacterium smegmatis str. MC2 155 4532165 YP_884515.1 CDS MSMEG_0099 NC_008596.1 122829 123314 D hypothetical protein 122829..123314 Mycobacterium smegmatis str. MC2 155 4533212 YP_884516.1 CDS MSMEG_0101 NC_008596.1 123311 123865 D hypothetical protein 123311..123865 Mycobacterium smegmatis str. MC2 155 4533137 YP_884517.1 CDS MSMEG_0100 NC_008596.1 123837 124643 R phosphotyrosine protein phosphatase ptpb complement(123837..124643) Mycobacterium smegmatis str. MC2 155 4531912 YP_884518.1 CDS MSMEG_0102 NC_008596.1 124640 125875 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(124640..125875) Mycobacterium smegmatis str. MC2 155 4533004 YP_884519.1 CDS MSMEG_0103 NC_008596.1 125900 127099 R identified by match to protein family HMM PF07690; major facilitator family protein transporter complement(125900..127099) Mycobacterium smegmatis str. MC2 155 4532553 YP_884520.1 CDS MSMEG_0104 NC_008596.1 127143 128024 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(127143..128024) Mycobacterium smegmatis str. MC2 155 4534198 YP_884521.1 CDS MSMEG_0105 NC_008596.1 128084 128734 D identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family transcriptional regulator 128084..128734 Mycobacterium smegmatis str. MC2 155 4536254 YP_884522.1 CDS MSMEG_0106 NC_008596.1 128750 129916 D identified by match to protein family HMM PF02518; sensory histidine kinase 128750..129916 Mycobacterium smegmatis str. MC2 155 4536311 YP_884523.1 CDS MSMEG_0107 NC_008596.1 129926 131527 R identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; cell envelope-related function transcriptional attenuator complement(129926..131527) Mycobacterium smegmatis str. MC2 155 4535185 YP_884524.1 CDS MSMEG_0108 NC_008596.1 131570 132709 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(131570..132709) Mycobacterium smegmatis str. MC2 155 4535049 YP_884525.1 CDS pntB NC_008596.1 132711 134153 R identified by similarity to SP:P07002; match to protein family HMM PF02233; NAD(P) transhydrogenase subunit beta complement(132711..134153) Mycobacterium smegmatis str. MC2 155 4537525 YP_884526.1 CDS pntA NC_008596.1 134172 135713 R forms a tetramer composed of 2 subunit alphas and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha complement(134172..135713) Mycobacterium smegmatis str. MC2 155 4531867 YP_884527.1 CDS MSMEG_0111 NC_008596.1 135783 136787 R identified by match to protein family HMM PF01544; magnesium transporter complement(135783..136787) Mycobacterium smegmatis str. MC2 155 4532188 YP_884528.1 CDS MSMEG_0112 NC_008596.1 136796 136912 R hypothetical protein complement(136796..136912) Mycobacterium smegmatis str. MC2 155 4535663 YP_884529.1 CDS MSMEG_0113 NC_008596.1 136950 137810 D identified by match to protein family HMM PF00528; taurine transporter permease TauC 136950..137810 Mycobacterium smegmatis str. MC2 155 4532372 YP_884530.1 CDS MSMEG_0114 NC_008596.1 137817 138845 D identified by match to protein family HMM PF04069; extracellular solute-binding protein 137817..138845 Mycobacterium smegmatis str. MC2 155 4533591 YP_884531.1 CDS MSMEG_0116 NC_008596.1 138829 139626 D identified by match to protein family HMM PF00005; taurine import ATP-binding protein TauB 138829..139626 Mycobacterium smegmatis str. MC2 155 4533525 YP_884532.1 CDS dehII NC_008596.1 139607 140287 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493; haloacid dehalogenase complement(139607..140287) Mycobacterium smegmatis str. MC2 155 4533279 YP_884533.1 CDS MSMEG_0117 NC_008596.1 140284 141147 R identified by match to protein family HMM PF00561; hydrolase complement(140284..141147) Mycobacterium smegmatis str. MC2 155 4537441 YP_884534.1 CDS MSMEG_0118 NC_008596.1 141232 141732 D identified by match to protein family HMM PF07336; hypothetical protein 141232..141732 Mycobacterium smegmatis str. MC2 155 4533901 YP_884535.1 CDS MSMEG_0119 NC_008596.1 141740 141850 R hypothetical protein complement(141740..141850) Mycobacterium smegmatis str. MC2 155 4536323 YP_884536.1 CDS MSMEG_0120 NC_008596.1 141969 142628 D identified by match to protein family HMM PF00440; transcriptional regulatory protein 141969..142628 Mycobacterium smegmatis str. MC2 155 4537094 YP_884537.1 CDS MSMEG_0121 NC_008596.1 142625 143398 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; rhamnolipid biosynthesis 3-oxoacyl-ACP reductase 142625..143398 Mycobacterium smegmatis str. MC2 155 4534829 YP_884538.1 CDS MSMEG_0122 NC_008596.1 143535 144542 D identified by match to protein family HMM PF03401; periplasmic solute-binding protein 143535..144542 Mycobacterium smegmatis str. MC2 155 4536605 YP_884539.1 CDS MSMEG_0123 NC_008596.1 144542 145048 D hypothetical protein 144542..145048 Mycobacterium smegmatis str. MC2 155 4532554 YP_884540.1 CDS MSMEG_0125 NC_008596.1 145067 146593 D identified by match to protein family HMM PF01970; integral membrane protein 145067..146593 Mycobacterium smegmatis str. MC2 155 4534172 YP_884541.1 CDS MSMEG_0124 NC_008596.1 146549 147232 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator complement(146549..147232) Mycobacterium smegmatis str. MC2 155 4537021 YP_884542.1 CDS MSMEG_0126 NC_008596.1 147229 148347 R identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase/muconate lactonizing enzyme complement(147229..148347) Mycobacterium smegmatis str. MC2 155 4536198 YP_884543.1 CDS MSMEG_0127 NC_008596.1 148387 149478 R identified by match to protein family HMM PF00107; oxidoreductase, zinc-binding dehydrogenase complement(148387..149478) Mycobacterium smegmatis str. MC2 155 4534581 YP_884544.1 CDS MSMEG_0128 NC_008596.1 149514 149963 D identified by match to protein family HMM PF03061; thioesterase 149514..149963 Mycobacterium smegmatis str. MC2 155 4536565 YP_884545.1 CDS MSMEG_0129 NC_008596.1 149990 150424 D similar to Streptomyces cyclase/dehydrase; identified by match to protein family HMM PF03364; cyclase/dehydrase 149990..150424 Mycobacterium smegmatis str. MC2 155 4537699 YP_884546.1 CDS MSMEG_0130 NC_008596.1 150431 151123 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(150431..151123) Mycobacterium smegmatis str. MC2 155 4535047 YP_884547.1 CDS MSMEG_0131 NC_008596.1 151273 152907 D activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 151273..152907 Mycobacterium smegmatis str. MC2 155 4532319 YP_884548.1 CDS MSMEG_0132 NC_008596.1 153100 153900 D identified by match to protein family HMM PF02405; hypothetical protein 153100..153900 Mycobacterium smegmatis str. MC2 155 4531586 YP_884549.1 CDS MSMEG_0133 NC_008596.1 153902 154771 D identified by match to protein family HMM PF02405; ABC transporter 153902..154771 Mycobacterium smegmatis str. MC2 155 4534877 YP_884550.1 CDS MSMEG_0134 NC_008596.1 154776 156005 D identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor Mce family protein 154776..156005 Mycobacterium smegmatis str. MC2 155 4532777 YP_884551.1 CDS MSMEG_0135 NC_008596.1 156002 157033 D identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor Mce family protein 156002..157033 Mycobacterium smegmatis str. MC2 155 4535097 YP_884552.1 CDS MSMEG_0136 NC_008596.1 157030 158604 D identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor Mce family protein 157030..158604 Mycobacterium smegmatis str. MC2 155 4537025 YP_884553.1 CDS MSMEG_0137 NC_008596.1 158623 160266 D identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor mce family protein 158623..160266 Mycobacterium smegmatis str. MC2 155 4536528 YP_884554.1 CDS MSMEG_0138 NC_008596.1 160266 161438 D identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor Mce family protein 160266..161438 Mycobacterium smegmatis str. MC2 155 4531663 YP_884555.1 CDS MSMEG_0139 NC_008596.1 161440 162996 D identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; mce-family protein mce1f 161440..162996 Mycobacterium smegmatis str. MC2 155 4531031 YP_884556.1 CDS MSMEG_0140 NC_008596.1 162966 163574 D mce associated membrane protein 162966..163574 Mycobacterium smegmatis str. MC2 155 4532576 YP_884557.1 CDS MSMEG_0141 NC_008596.1 163571 164539 D identified by match to protein family HMM PF06271; mce associated transmembrane protein 163571..164539 Mycobacterium smegmatis str. MC2 155 4533952 YP_884558.1 CDS MSMEG_0142 NC_008596.1 164536 165084 D hypothetical protein 164536..165084 Mycobacterium smegmatis str. MC2 155 4533860 YP_884559.1 CDS MSMEG_0143 NC_008596.1 165051 165941 D mce associated membrane protein 165051..165941 Mycobacterium smegmatis str. MC2 155 4532295 YP_884560.1 CDS MSMEG_0145 NC_008596.1 165944 166612 D identified by match to protein family HMM PF06912; hypothetical protein 165944..166612 Mycobacterium smegmatis str. MC2 155 4533519 YP_884561.1 CDS MSMEG_0144 NC_008596.1 166609 168477 R identified by match to protein family HMM PF01844; match to protein family HMM PF02720; HNH endonuclease complement(166609..168477) Mycobacterium smegmatis str. MC2 155 4531558 YP_884562.1 CDS MSMEG_0146 NC_008596.1 168543 169361 R identified by match to protein family HMM PF03473; mosc domain-containing protein complement(168543..169361) Mycobacterium smegmatis str. MC2 155 4534370 YP_884563.1 CDS MSMEG_0147 NC_008596.1 169419 170333 R C-5 sterol desaturase complement(169419..170333) Mycobacterium smegmatis str. MC2 155 4535468 YP_884564.1 CDS MSMEG_0148 NC_008596.1 170367 170996 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(170367..170996) Mycobacterium smegmatis str. MC2 155 4537475 YP_884565.1 CDS MSMEG_0149 NC_008596.1 171077 172504 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(171077..172504) Mycobacterium smegmatis str. MC2 155 4533688 YP_884566.1 CDS MSMEG_0150 NC_008596.1 172501 173934 R identified by match to protein family HMM PF02233; NAD(P) transhydrogenase subunit beta complement(172501..173934) Mycobacterium smegmatis str. MC2 155 4533454 YP_884567.1 CDS MSMEG_0151 NC_008596.1 173931 174254 R PntAB protein complement(173931..174254) Mycobacterium smegmatis str. MC2 155 4536197 YP_884568.1 CDS MSMEG_0152 NC_008596.1 174258 175340 R identified by match to protein family HMM PF01262; match to protein family HMM PF05222; alanine dehydrogenase complement(174258..175340) Mycobacterium smegmatis str. MC2 155 4534751 YP_884569.1 CDS panE NC_008596.1 175555 176568 D Ketopantoate reductase; catalyzes the NADPH reduction of Ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 175555..176568 Mycobacterium smegmatis str. MC2 155 4533776 YP_884570.1 CDS pyk NC_008596.1 176579 178012 D identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase 176579..178012 Mycobacterium smegmatis str. MC2 155 4535708 YP_884571.1 CDS MSMEG_0155 NC_008596.1 178054 178524 R identified by match to protein family HMM PF00989; match to protein family HMM TIGR00229; transcriptional regulator complement(178054..178524) Mycobacterium smegmatis str. MC2 155 4532483 YP_884572.1 CDS MSMEG_0156 NC_008596.1 178631 179557 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 178631..179557 Mycobacterium smegmatis str. MC2 155 4531812 YP_884573.1 CDS MSMEG_0157 NC_008596.1 179717 181450 D catalyzes the formation of formyl-CoA from oxalyl-CoA; oxalyl-CoA decarboxylase 179717..181450 Mycobacterium smegmatis str. MC2 155 4531329 YP_884574.1 CDS MSMEG_0158 NC_008596.1 181519 182781 D catalyzes the formation of oxalyl-CoA from oxalate and Formyl-CoA; formyl-coenzyme A transferase 181519..182781 Mycobacterium smegmatis str. MC2 155 4535711 YP_884575.1 CDS MSMEG_0159 NC_008596.1 182884 183369 D identified by similarity to GB:CAA11233.1; match to protein family HMM PF01257; formate dehydrogenase subunit gamma 182884..183369 Mycobacterium smegmatis str. MC2 155 4530839 YP_884576.1 CDS MSMEG_0160 NC_008596.1 183366 184964 D identified by similarity to GB:CAA11234.1; match to protein family HMM PF01512; formate dehydrogenase subunit beta 183366..184964 Mycobacterium smegmatis str. MC2 155 4533831 YP_884577.1 CDS MSMEG_0161 NC_008596.1 184961 187780 D identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; formate dehydrogenase subunit alpha 184961..187780 Mycobacterium smegmatis str. MC2 155 4533672 YP_884578.1 CDS MSMEG_0162 NC_008596.1 187782 188006 D NAD-dependent formate dehydrogenase subunit delta 187782..188006 Mycobacterium smegmatis str. MC2 155 4535503 YP_884579.1 CDS MSMEG_0163 NC_008596.1 188070 188381 R hypothetical protein complement(188070..188381) Mycobacterium smegmatis str. MC2 155 4530951 YP_884580.1 CDS MSMEG_0164 NC_008596.1 188427 189770 R identified by match to protein family HMM PF07690; transmembrane transporter complement(188427..189770) Mycobacterium smegmatis str. MC2 155 4532752 YP_884581.1 CDS fdhD NC_008596.1 189944 190786 D involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 189944..190786 Mycobacterium smegmatis str. MC2 155 4536259 YP_884582.1 CDS MSMEG_0166 NC_008596.1 190817 191545 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator complement(190817..191545) Mycobacterium smegmatis str. MC2 155 4537580 YP_884583.1 CDS MSMEG_0167 NC_008596.1 191746 193149 R identified by match to protein family HMM PF07690; transmembrane transporter complement(191746..193149) Mycobacterium smegmatis str. MC2 155 4531003 YP_884584.1 CDS MSMEG_0168 NC_008596.1 193685 194971 D catalyzes the formation of oxalyl-CoA from oxalate and Formyl-CoA; formyl-coenzyme A transferase 193685..194971 Mycobacterium smegmatis str. MC2 155 4533422 YP_884585.1 CDS MSMEG_0169 NC_008596.1 195087 195203 R hypothetical protein complement(195087..195203) Mycobacterium smegmatis str. MC2 155 4536175 YP_884586.1 CDS MSMEG_0170 NC_008596.1 195185 196567 D identified by match to protein family HMM PF07690; transmembrane transporter 195185..196567 Mycobacterium smegmatis str. MC2 155 4535158 YP_884587.1 CDS MSMEG_0171 NC_008596.1 196658 197587 D identified by match to protein family HMM PF00850; histone deacetylase superfamily protein 196658..197587 Mycobacterium smegmatis str. MC2 155 4533586 YP_884588.1 CDS MSMEG_0172 NC_008596.1 197588 198190 R transmembrane protein complement(197588..198190) Mycobacterium smegmatis str. MC2 155 4533695 YP_884589.1 CDS MSMEG_0173 NC_008596.1 198371 198691 R hypothetical protein complement(198371..198691) Mycobacterium smegmatis str. MC2 155 4535416 YP_884590.1 CDS MSMEG_0174 NC_008596.1 198688 199059 R identified by match to protein family HMM PF02656; inner membrane protein complement(198688..199059) Mycobacterium smegmatis str. MC2 155 4535756 YP_884591.1 CDS MSMEG_0175 NC_008596.1 199157 200293 D identified by match to protein family HMM PF01266; FAD dependent oxidoreductase 199157..200293 Mycobacterium smegmatis str. MC2 155 4536782 YP_884592.1 CDS MSMEG_0176 NC_008596.1 200304 201158 D identified by match to protein family HMM PF00497; glutamine ABC transporter periplasmic protein 200304..201158 Mycobacterium smegmatis str. MC2 155 4534705 YP_884593.1 CDS MSMEG_0177 NC_008596.1 201116 202087 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; polar amino acid ABC transporter inner membrane protein 201116..202087 Mycobacterium smegmatis str. MC2 155 4536623 YP_884594.1 CDS MSMEG_0178 NC_008596.1 202084 202866 D identified by match to protein family HMM PF00005; ATP-binding protein 202084..202866 Mycobacterium smegmatis str. MC2 155 4533066 YP_884595.1 CDS MSMEG_0179 NC_008596.1 202876 203547 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator complement(202876..203547) Mycobacterium smegmatis str. MC2 155 4534859 YP_884596.1 CDS MSMEG_0180 NC_008596.1 203664 204173 R identified by match to protein family HMM PF00440; HTH-type transcriptional regulator complement(203664..204173) Mycobacterium smegmatis str. MC2 155 4531589 YP_884597.1 CDS MSMEG_0181 NC_008596.1 204225 205163 D identified by match to protein family HMM PF02668; alpha-ketoglutarate-dependent taurine dioxygenase 204225..205163 Mycobacterium smegmatis str. MC2 155 4532317 YP_884598.1 CDS MSMEG_0182 NC_008596.1 205190 206347 D identified by match to protein family HMM PF00561; match to protein family HMM PF06441; epoxide hydrolase 1 205190..206347 Mycobacterium smegmatis str. MC2 155 4532398 YP_884599.1 CDS MSMEG_0184 NC_008596.1 206362 208134 D identified by match to protein family HMM PF01019; transferase 206362..208134 Mycobacterium smegmatis str. MC2 155 4533091 YP_884600.1 CDS MSMEG_0183 NC_008596.1 208033 208584 R hypothetical protein complement(208033..208584) Mycobacterium smegmatis str. MC2 155 4535626 YP_884601.1 CDS MSMEG_0185 NC_008596.1 208581 211442 R identified by match to protein family HMM PF03176; MmpL6 protein complement(208581..211442) Mycobacterium smegmatis str. MC2 155 4537140 YP_884602.1 CDS MSMEG_0186 NC_008596.1 211421 211915 R identified by match to protein family HMM PF05423; MmpS2 protein complement(211421..211915) Mycobacterium smegmatis str. MC2 155 4536136 YP_884603.1 CDS MSMEG_0188 NC_008596.1 212103 212558 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 212103..212558 Mycobacterium smegmatis str. MC2 155 4533215 YP_884604.1 CDS MSMEG_0187 NC_008596.1 212548 213024 R identified by match to protein family HMM PF00583; acetyltransferase complement(212548..213024) Mycobacterium smegmatis str. MC2 155 4534774 YP_884605.1 CDS anmK NC_008596.1 212999 214165 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(212999..214165) Mycobacterium smegmatis str. MC2 155 4536037 YP_884606.1 CDS MSMEG_0190 NC_008596.1 214183 215742 R identified by match to protein family HMM PF00474; integral membrane transporter complement(214183..215742) Mycobacterium smegmatis str. MC2 155 4531662 YP_884607.1 CDS MSMEG_0191 NC_008596.1 215751 216680 R identified by match to protein family HMM PF01869; BadF/BadG/BcrA/BcrD ATPase complement(215751..216680) Mycobacterium smegmatis str. MC2 155 4533641 YP_884608.1 CDS MSMEG_0192 NC_008596.1 216912 217814 D identified by match to protein family HMM PF01380; match to protein family HMM PF01418; RpiR family transcriptional regulator protein 216912..217814 Mycobacterium smegmatis str. MC2 155 4537013 YP_884609.1 CDS murQ NC_008596.1 217828 218724 D catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase 217828..218724 Mycobacterium smegmatis str. MC2 155 4533731 YP_884610.1 CDS MSMEG_0194 NC_008596.1 218725 219423 R identified by match to protein family HMM PF01083; serine esterase, cutinase complement(218725..219423) Mycobacterium smegmatis str. MC2 155 4533676 YP_884611.1 CDS MSMEG_0195 NC_008596.1 219598 221238 D identified by match to protein family HMM PF01266; match to protein family HMM PF07992; steroid monooxygenase 219598..221238 Mycobacterium smegmatis str. MC2 155 4535039 YP_884612.1 CDS MSMEG_0196 NC_008596.1 221243 222139 D identified by match to protein family HMM PF00296; dehydrogenase 221243..222139 Mycobacterium smegmatis str. MC2 155 4537413 YP_884613.1 CDS MSMEG_0197 NC_008596.1 222149 222793 R identified by match to protein family HMM PF00293; nudix hydrolase complement(222149..222793) Mycobacterium smegmatis str. MC2 155 4532363 YP_884614.1 CDS MSMEG_0198 NC_008596.1 222803 223936 R identified by match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(222803..223936) Mycobacterium smegmatis str. MC2 155 4535631 YP_884615.1 CDS MSMEG_0200 NC_008596.1 225160 227712 D hypothetical protein 225160..227712 Mycobacterium smegmatis str. MC2 155 4531433 YP_884616.1 CDS MSMEG_0201 NC_008596.1 227725 228231 R hypothetical protein complement(227725..228231) Mycobacterium smegmatis str. MC2 155 4531909 YP_884617.1 CDS MSMEG_0202 NC_008596.1 227950 229272 D identified by similarity to GP:150005; match to protein family HMM PF01610; IS1096, tnpA protein 227950..229272 Mycobacterium smegmatis str. MC2 155 4535271 YP_884618.1 CDS MSMEG_0203 NC_008596.1 229280 229981 R identified by similarity to GP:150004; match to protein family HMM PF07929; IS1096, tnpR protein complement(229280..229981) Mycobacterium smegmatis str. MC2 155 4535784 YP_884619.1 CDS MSMEG_0204 NC_008596.1 230210 232255 D hypothetical protein 230210..232255 Mycobacterium smegmatis str. MC2 155 4531378 YP_884620.1 CDS MSMEG_0205 NC_008596.1 232344 232667 R identified by match to protein family HMM PF03992; tetracenomycin polyketide synthesis hydroxylase TcmH complement(232344..232667) Mycobacterium smegmatis str. MC2 155 4532795 YP_884621.1 CDS MSMEG_0207 NC_008596.1 232728 233168 D identified by match to protein family HMM PF01047; match to protein family HMM PF01978; MarR family transcriptional regulator 232728..233168 Mycobacterium smegmatis str. MC2 155 4533501 YP_884622.1 CDS MSMEG_0206 NC_008596.1 233161 235296 R identified by match to protein family HMM PF01757; acyltransferase complement(233161..235296) Mycobacterium smegmatis str. MC2 155 4534948 YP_884623.1 CDS MSMEG_0208 NC_008596.1 235408 235785 D identified by match to protein family HMM PF00545; ribonuclease 235408..235785 Mycobacterium smegmatis str. MC2 155 4535778 YP_884624.1 CDS MSMEG_0209 NC_008596.1 235782 236060 D ribonuclease inhibitor 235782..236060 Mycobacterium smegmatis str. MC2 155 4534314 YP_884625.1 CDS MSMEG_0210 NC_008596.1 236061 237149 R LprO protein complement(236061..237149) Mycobacterium smegmatis str. MC2 155 4534406 YP_884626.1 CDS MSMEG_0211 NC_008596.1 237244 239607 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(237244..239607) Mycobacterium smegmatis str. MC2 155 4530862 YP_884627.1 CDS MSMEG_0212 NC_008596.1 239607 240026 R identified by match to protein family HMM PF00903; lyase complement(239607..240026) Mycobacterium smegmatis str. MC2 155 4532255 YP_884628.1 CDS MSMEG_0213 NC_008596.1 240031 240471 R identified by match to protein family HMM PF00165; transcriptional regulator complement(240031..240471) Mycobacterium smegmatis str. MC2 155 4532311 YP_884629.1 CDS MSMEG_0214 NC_008596.1 240488 241771 R L-sorbosone dehydrogenase complement(240488..241771) Mycobacterium smegmatis str. MC2 155 4531055 YP_884630.1 CDS MSMEG_0215 NC_008596.1 241749 242465 R identified by match to protein family HMM PF02678; hypothetical protein complement(241749..242465) Mycobacterium smegmatis str. MC2 155 4537419 YP_884631.1 CDS MSMEG_0216 NC_008596.1 242603 243397 D identified by match to protein family HMM PF00106; 3-hydroxyacyl-CoA dehydrogenase 242603..243397 Mycobacterium smegmatis str. MC2 155 4533309 YP_884632.1 CDS MSMEG_0217 NC_008596.1 243477 244601 R identified by match to protein family HMM PF00107; alcohol dehydrogenase complement(243477..244601) Mycobacterium smegmatis str. MC2 155 4535822 YP_884633.1 CDS MSMEG_0218 NC_008596.1 244773 245267 D identified by match to protein family HMM PF06983; 3-demethylubiquinone-9 3-methyltransferase 244773..245267 Mycobacterium smegmatis str. MC2 155 4537098 YP_884634.1 CDS MSMEG_0219 NC_008596.1 245271 246293 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 complement(245271..246293) Mycobacterium smegmatis str. MC2 155 4533155 YP_884635.1 CDS MSMEG_0220 NC_008596.1 246357 247199 D identified by match to protein family HMM PF00561; monoglyceride lipase 246357..247199 Mycobacterium smegmatis str. MC2 155 4532461 YP_884636.1 CDS MSMEG_0221 NC_008596.1 247214 248173 D hypothetical protein 247214..248173 Mycobacterium smegmatis str. MC2 155 4534154 YP_884637.1 CDS MSMEG_0222 NC_008596.1 248214 248957 D hypothetical protein 248214..248957 Mycobacterium smegmatis str. MC2 155 4533970 YP_884638.1 CDS MSMEG_0223 NC_008596.1 248954 249436 D hypothetical protein 248954..249436 Mycobacterium smegmatis str. MC2 155 4533477 YP_884639.1 CDS MSMEG_0224 NC_008596.1 249456 250112 D identified by match to protein family HMM PF01135; match to protein family HMM PF01596; O-methyltransferase MdmC 249456..250112 Mycobacterium smegmatis str. MC2 155 4532629 YP_884640.1 CDS MSMEG_0225 NC_008596.1 250120 253017 R identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833; MmpL4 protein complement(250120..253017) Mycobacterium smegmatis str. MC2 155 4537380 YP_884641.1 CDS MSMEG_0226 NC_008596.1 253014 253442 R identified by match to protein family HMM PF05423; MmpS5 protein complement(253014..253442) Mycobacterium smegmatis str. MC2 155 4533472 YP_884642.1 CDS MSMEG_0227 NC_008596.1 253688 254257 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 253688..254257 Mycobacterium smegmatis str. MC2 155 4531090 YP_884643.1 CDS MSMEG_0228 NC_008596.1 254330 257482 D identified by match to protein family HMM PF00211; adenylate and guanylate cyclase catalytic domain-containing protein 254330..257482 Mycobacterium smegmatis str. MC2 155 4532924 YP_884644.1 CDS ilvD NC_008596.1 257573 259288 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(257573..259288) Mycobacterium smegmatis str. MC2 155 4534428 YP_884645.1 CDS MSMEG_0230 NC_008596.1 259367 259672 D identified by match to protein family HMM PF02583; hypothetical protein 259367..259672 Mycobacterium smegmatis str. MC2 155 4534215 YP_884646.1 CDS MSMEG_0231 NC_008596.1 259691 259990 R identified by match to protein family HMM PF01910; match to protein family HMM TIGR00106; hypothetical protein complement(259691..259990) Mycobacterium smegmatis str. MC2 155 4536158 YP_884647.1 CDS MSMEG_0232 NC_008596.1 260053 261282 D identified by match to protein family HMM PF07690; sugar transporter family protein 260053..261282 Mycobacterium smegmatis str. MC2 155 4535366 YP_884648.1 CDS MSMEG_0233 NC_008596.1 261440 262480 D identified by match to protein family HMM PF03734; lipoprotein Lpps 261440..262480 Mycobacterium smegmatis str. MC2 155 4533551 YP_884649.1 CDS MSMEG_0234 NC_008596.1 262543 264543 R identified by match to protein family HMM PF01431; match to protein family HMM PF05649; metallopeptidase complement(262543..264543) Mycobacterium smegmatis str. MC2 155 4537325 YP_884650.1 CDS MSMEG_0235 NC_008596.1 264607 265227 D hypothetical protein 264607..265227 Mycobacterium smegmatis str. MC2 155 4532088 YP_884651.1 CDS MSMEG_0236 NC_008596.1 265224 265913 D transmembrane protein 265224..265913 Mycobacterium smegmatis str. MC2 155 4532450 YP_884652.1 CDS MSMEG_0237 NC_008596.1 266047 267453 D identified by similarity to GP:4838457; match to protein family HMM PF01609; ISMsm3, transposase 266047..267453 Mycobacterium smegmatis str. MC2 155 4534471 YP_884653.1 CDS MSMEG_0238 NC_008596.1 267632 268102 R identified by match to protein family HMM PF02629; O-acetylhomoserine/O-acetylserine sulfhydrylase complement(267632..268102) Mycobacterium smegmatis str. MC2 155 4535748 YP_884654.1 CDS MSMEG_0239 NC_008596.1 268095 269390 R identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326; O-acetylhomoserine/O-acetylserine sulfhydrylase complement(268095..269390) Mycobacterium smegmatis str. MC2 155 4536579 YP_884655.1 CDS MSMEG_0240 NC_008596.1 269466 270074 R hypothetical protein complement(269466..270074) Mycobacterium smegmatis str. MC2 155 4531151 YP_884656.1 CDS MSMEG_0241 NC_008596.1 270077 272941 R identified by match to protein family HMM PF03176; MmpL11 protein complement(270077..272941) Mycobacterium smegmatis str. MC2 155 4537596 YP_884657.1 CDS MSMEG_0242 NC_008596.1 273263 273844 D hypothetical protein 273263..273844 Mycobacterium smegmatis str. MC2 155 4535124 YP_884658.1 CDS MSMEG_0243 NC_008596.1 274044 274394 D hypothetical protein 274044..274394 Mycobacterium smegmatis str. MC2 155 4535563 YP_884659.1 CDS MSMEG_0244 NC_008596.1 274400 275140 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two component response transcriptional regulatory protein prra 274400..275140 Mycobacterium smegmatis str. MC2 155 4531753 YP_884660.1 CDS MSMEG_0246 NC_008596.1 275161 276513 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor-type histidine kinase PrrB 275161..276513 Mycobacterium smegmatis str. MC2 155 4536279 YP_884661.1 CDS MSMEG_0245 NC_008596.1 276501 276869 R transmembrane protein complement(276501..276869) Mycobacterium smegmatis str. MC2 155 4535533 YP_884662.1 CDS MSMEG_0247 NC_008596.1 276856 278070 R identified by match to protein family HMM PF01551; secreted peptidase complement(276856..278070) Mycobacterium smegmatis str. MC2 155 4532618 YP_884663.1 CDS MSMEG_0248 NC_008596.1 278070 279161 R identified by match to protein family HMM PF03706; match to protein family HMM TIGR00374; hypothetical protein complement(278070..279161) Mycobacterium smegmatis str. MC2 155 4536727 YP_884664.1 CDS MSMEG_0249 NC_008596.1 279235 280374 D identified by match to protein family HMM PF01594; integral membrane protein 279235..280374 Mycobacterium smegmatis str. MC2 155 4534476 YP_884665.1 CDS MSMEG_0250 NC_008596.1 280382 283423 R membrane protein, MmpL family protein complement(280382..283423) Mycobacterium smegmatis str. MC2 155 4533839 YP_884666.1 CDS MSMEG_0251 NC_008596.1 283518 284216 R hypothetical protein complement(283518..284216) Mycobacterium smegmatis str. MC2 155 4535632 YP_884667.1 CDS trmB NC_008596.1 284219 284941 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(284219..284941) Mycobacterium smegmatis str. MC2 155 4535198 YP_884668.1 CDS MSMEG_0253 NC_008596.1 285164 286186 D hypothetical protein 285164..286186 Mycobacterium smegmatis str. MC2 155 4532888 YP_884669.1 CDS MSMEG_0254 NC_008596.1 286183 287649 D hypothetical protein 286183..287649 Mycobacterium smegmatis str. MC2 155 4532318 YP_884670.1 CDS MSMEG_0255 NC_008596.1 287807 289633 D catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase 287807..289633 Mycobacterium smegmatis str. MC2 155 4531575 YP_884671.1 CDS MSMEG_0256 NC_008596.1 289749 290651 D hypothetical protein 289749..290651 Mycobacterium smegmatis str. MC2 155 4532928 YP_884672.1 CDS MSMEG_0257 NC_008596.1 290685 292199 D activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 290685..292199 Mycobacterium smegmatis str. MC2 155 4534287 YP_884673.1 CDS MSMEG_0259 NC_008596.1 292201 293106 D identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase 292201..293106 Mycobacterium smegmatis str. MC2 155 4532516 YP_884674.1 CDS MSMEG_0258 NC_008596.1 293084 293794 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; oxidoreductase, short chain dehydrogenase/reductase complement(293084..293794) Mycobacterium smegmatis str. MC2 155 4531472 YP_884675.1 CDS MSMEG_0260 NC_008596.1 293906 294721 D DNA-binding protein 293906..294721 Mycobacterium smegmatis str. MC2 155 4535930 YP_884676.1 CDS MSMEG_0261 NC_008596.1 294737 295729 D p40 protein 294737..295729 Mycobacterium smegmatis str. MC2 155 4531835 YP_884677.1 CDS MSMEG_0262 NC_008596.1 295766 296872 D hypothetical protein 295766..296872 Mycobacterium smegmatis str. MC2 155 4533022 YP_884678.1 CDS MSMEG_0263 NC_008596.1 296866 298137 D identified by match to protein family HMM PF07969; amidohydrolase 296866..298137 Mycobacterium smegmatis str. MC2 155 4535355 YP_884679.1 CDS MSMEG_0264 NC_008596.1 298158 299276 D identified by match to protein family HMM PF07690; transmembrane transporter 298158..299276 Mycobacterium smegmatis str. MC2 155 4531746 YP_884680.1 CDS MSMEG_0266 NC_008596.1 299314 300771 D identified by match to protein family HMM PF01276; match to protein family HMM PF03711; arginine decarboxylase 299314..300771 Mycobacterium smegmatis str. MC2 155 4533778 YP_884681.1 CDS MSMEG_0265 NC_008596.1 300761 301390 R identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758; uracil DNA glycosylase superfamily protein complement(300761..301390) Mycobacterium smegmatis str. MC2 155 4532345 YP_884682.1 CDS MSMEG_0267 NC_008596.1 301478 302494 D identified by match to protein family HMM PF07859; esterase 301478..302494 Mycobacterium smegmatis str. MC2 155 4531219 YP_884683.1 CDS MSMEG_0268 NC_008596.1 302495 303274 R identified by match to protein family HMM PF00392; match to protein family HMM PF02082; match to protein family HMM PF07702; GntR family transcriptional regulator complement(302495..303274) Mycobacterium smegmatis str. MC2 155 4533722 YP_884684.1 CDS MSMEG_0269 NC_008596.1 303324 304103 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase complement(303324..304103) Mycobacterium smegmatis str. MC2 155 4531547 YP_884685.1 CDS MSMEG_0270 NC_008596.1 304140 305144 R identified by match to protein family HMM PF01636; aminoglycoside phosphotransferase complement(304140..305144) Mycobacterium smegmatis str. MC2 155 4536001 YP_884686.1 CDS MSMEG_0271 NC_008596.1 305144 305800 R hypothetical protein complement(305144..305800) Mycobacterium smegmatis str. MC2 155 4532263 YP_884687.1 CDS MSMEG_0272 NC_008596.1 305803 306084 R identified by match to protein family HMM PF00936; propanediol utilization protein PduA complement(305803..306084) Mycobacterium smegmatis str. MC2 155 4532935 YP_884688.1 CDS MSMEG_0273 NC_008596.1 306097 306360 R identified by match to protein family HMM PF03319; ethanolamine utilization protein EutN complement(306097..306360) Mycobacterium smegmatis str. MC2 155 4535004 YP_884689.1 CDS MSMEG_0274 NC_008596.1 306377 306898 R hypothetical protein complement(306377..306898) Mycobacterium smegmatis str. MC2 155 4531449 YP_884690.1 CDS MSMEG_0275 NC_008596.1 306901 307509 R identified by match to protein family HMM PF00936; microcompartments protein family protein complement(306901..307509) Mycobacterium smegmatis str. MC2 155 4537562 YP_884691.1 CDS MSMEG_0276 NC_008596.1 307518 309101 R identified by match to protein family HMM PF00171; aldehyde-alcohol dehydrogenase complement(307518..309101) Mycobacterium smegmatis str. MC2 155 4533133 YP_884692.1 CDS MSMEG_0277 NC_008596.1 309098 310378 R identified by match to protein family HMM PF00202; aminotransferase complement(309098..310378) Mycobacterium smegmatis str. MC2 155 4537174 YP_884693.1 CDS MSMEG_0279 NC_008596.1 310563 312098 D identified by match to protein family HMM PF00324; amino acid permease 310563..312098 Mycobacterium smegmatis str. MC2 155 4532110 YP_884694.1 CDS MSMEG_0278 NC_008596.1 312095 312322 R hypothetical protein complement(312095..312322) Mycobacterium smegmatis str. MC2 155 4533192 YP_884695.1 CDS MSMEG_0280 NC_008596.1 312359 313258 R identified by match to protein family HMM PF07859; alpha/beta hydrolase complement(312359..313258) Mycobacterium smegmatis str. MC2 155 4531026 YP_884696.1 CDS MSMEG_0281 NC_008596.1 313349 314920 D identified by match to protein family HMM PF00732; match to protein family HMM PF05199; choline dehydrogenase 313349..314920 Mycobacterium smegmatis str. MC2 155 4532422 YP_884697.1 CDS MSMEG_0282 NC_008596.1 314913 315233 D identified by match to protein family HMM PF07110; match to protein family HMM TIGR02118; hypothetical protein 314913..315233 Mycobacterium smegmatis str. MC2 155 4536846 YP_884698.1 CDS MSMEG_0283 NC_008596.1 315285 316055 D identified by match to protein family HMM PF00106; short chain dehydrogenase 315285..316055 Mycobacterium smegmatis str. MC2 155 4534540 YP_884699.1 CDS MSMEG_0284 NC_008596.1 316060 316854 R identified by match to protein family HMM PF02525; ribosyldihydronicotinamide dehydrogenase complement(316060..316854) Mycobacterium smegmatis str. MC2 155 4536095 YP_884700.1 CDS MSMEG_0285 NC_008596.1 316851 317453 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(316851..317453) Mycobacterium smegmatis str. MC2 155 4536059 YP_884701.1 CDS MSMEG_0286 NC_008596.1 317634 318320 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator complement(317634..318320) Mycobacterium smegmatis str. MC2 155 4537511 YP_884702.1 CDS MSMEG_0287 NC_008596.1 318317 318844 R hypothetical protein complement(318317..318844) Mycobacterium smegmatis str. MC2 155 4531724 YP_884703.1 CDS MSMEG_0288 NC_008596.1 318960 320069 D identified by match to protein family HMM PF01266; FAD dependent oxidoreductase 318960..320069 Mycobacterium smegmatis str. MC2 155 4536278 YP_884704.1 CDS MSMEG_0289 NC_008596.1 320261 321361 D identified by match to protein family HMM PF07859; alpha/beta hydrolase 320261..321361 Mycobacterium smegmatis str. MC2 155 4531400 YP_884705.1 CDS MSMEG_0290 NC_008596.1 321386 322804 D identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946; acyltransferase 321386..322804 Mycobacterium smegmatis str. MC2 155 4537035 YP_884706.1 CDS MSMEG_0291 NC_008596.1 322807 323652 R identified by match to protein family HMM PF02668; dioxygenase, TauD/TfdA family protein complement(322807..323652) Mycobacterium smegmatis str. MC2 155 4531037 YP_884707.1 CDS MSMEG_0292 NC_008596.1 323681 324010 R hypothetical protein complement(323681..324010) Mycobacterium smegmatis str. MC2 155 4535390 YP_884708.1 CDS MSMEG_0293 NC_008596.1 324012 325277 R identified by match to protein family HMM PF00355; Rieske (2Fe-2S) domain-containing protein complement(324012..325277) Mycobacterium smegmatis str. MC2 155 4534745 YP_884709.1 CDS fabG NC_008596.1 325317 326060 R identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; 3-oxoacyl-ACP reductase complement(325317..326060) Mycobacterium smegmatis str. MC2 155 4536582 YP_884710.1 CDS MSMEG_0295 NC_008596.1 326057 327133 R identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; oxidoreductase, FAD-binding complement(326057..327133) Mycobacterium smegmatis str. MC2 155 4532166 YP_884711.1 CDS MSMEG_0296 NC_008596.1 327192 327647 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(327192..327647) Mycobacterium smegmatis str. MC2 155 4534392 YP_884712.1 CDS MSMEG_0297 NC_008596.1 327678 328937 R identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase complement(327678..328937) Mycobacterium smegmatis str. MC2 155 4536583 YP_884713.1 CDS MSMEG_0298 NC_008596.1 328934 329275 R hypothetical protein complement(328934..329275) Mycobacterium smegmatis str. MC2 155 4534801 YP_884714.1 CDS MSMEG_0299 NC_008596.1 329279 330544 R identified by match to protein family HMM PF00355; Rieske (2Fe-2S) domain-containing protein complement(329279..330544) Mycobacterium smegmatis str. MC2 155 4531878 YP_884715.1 CDS MSMEG_0300 NC_008596.1 330792 331799 D identified by match to protein family HMM PF04909; amidohydrolase 330792..331799 Mycobacterium smegmatis str. MC2 155 4532709 YP_884716.1 CDS MSMEG_0301 NC_008596.1 331803 333170 R identified by match to protein family HMM PF01565; match to protein family HMM PF02913; oxidoreductase, FAD-binding complement(331803..333170) Mycobacterium smegmatis str. MC2 155 4531768 YP_884717.1 CDS MSMEG_0303 NC_008596.1 333272 334264 D identified by match to protein family HMM PF00107; alcohol dehydrogenase 333272..334264 Mycobacterium smegmatis str. MC2 155 4531229 YP_884718.1 CDS MSMEG_0302 NC_008596.1 334261 335472 R identified by match to protein family HMM PF00326; match to protein family HMM PF07859; peptidase, S9A/B/C families complement(334261..335472) Mycobacterium smegmatis str. MC2 155 4534561 YP_884719.1 CDS MSMEG_0304 NC_008596.1 335465 337096 R activates fatty acids by binding to coenzyme A; acyl-CoA synthetase complement(335465..337096) Mycobacterium smegmatis str. MC2 155 4535969 YP_884720.1 CDS MSMEG_0305 NC_008596.1 337102 337911 R identified by match to protein family HMM PF01553; acyltransferase domain-containing protein complement(337102..337911) Mycobacterium smegmatis str. MC2 155 4532846 YP_884721.1 CDS MSMEG_0306 NC_008596.1 337990 338826 D identified by match to protein family HMM PF00797; arylamine N-acetyltransferase 337990..338826 Mycobacterium smegmatis str. MC2 155 4532102 YP_884722.1 CDS MSMEG_0307 NC_008596.1 338897 339805 D AraC family transcriptional regulator 338897..339805 Mycobacterium smegmatis str. MC2 155 4535152 YP_884723.1 CDS MSMEG_0308 NC_008596.1 339809 340336 D dihydrofolate reductase 339809..340336 Mycobacterium smegmatis str. MC2 155 4537307 YP_884724.1 CDS MSMEG_0309 NC_008596.1 340411 341904 R identified by match to protein family HMM PF00171; aldehyde dehydrogenase complement(340411..341904) Mycobacterium smegmatis str. MC2 155 4535417 YP_884725.1 CDS MSMEG_0311 NC_008596.1 342748 343923 D identified by match to protein family HMM PF00534; glycosyltransferase 342748..343923 Mycobacterium smegmatis str. MC2 155 4535866 YP_884726.1 CDS eda NC_008596.1 343930 344559 R identified by similarity to SP:P10177; match to protein family HMM PF01081; match to protein family HMM TIGR01182; 2-dehydro-3-deoxyphosphogluconate aldolase complement(343930..344559) Mycobacterium smegmatis str. MC2 155 4535550 YP_884727.1 CDS edd NC_008596.1 344556 346385 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase complement(344556..346385) Mycobacterium smegmatis str. MC2 155 4533971 YP_884728.1 CDS zwf NC_008596.1 346382 347869 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(346382..347869) Mycobacterium smegmatis str. MC2 155 4537542 YP_884729.1 CDS MSMEG_0316 NC_008596.1 348060 349247 D identified by match to protein family HMM PF00480; NagC regulator 348060..349247 Mycobacterium smegmatis str. MC2 155 4534009 YP_884730.1 CDS MSMEG_0315 NC_008596.1 349207 350844 R transmembrane protein complement(349207..350844) Mycobacterium smegmatis str. MC2 155 4533314 YP_884731.1 CDS MSMEG_0317 NC_008596.1 350874 352070 R hypothetical protein complement(350874..352070) Mycobacterium smegmatis str. MC2 155 4536620 YP_884732.1 CDS MSMEG_0319 NC_008596.1 352236 353429 D identified by match to protein family HMM PF01757; acyltransferase 352236..353429 Mycobacterium smegmatis str. MC2 155 4531166 YP_884733.1 CDS MSMEG_0318 NC_008596.1 353392 354879 R identified by match to protein family HMM PF00501; AMP-dependent synthetase/ligase complement(353392..354879) Mycobacterium smegmatis str. MC2 155 4531964 YP_884734.1 CDS MSMEG_0320 NC_008596.1 354881 355858 R identified by match to protein family HMM PF02126; phosphotriesterase complement(354881..355858) Mycobacterium smegmatis str. MC2 155 4534398 YP_884735.1 CDS MSMEG_0321 NC_008596.1 355916 358708 R identified by match to protein family HMM PF00196; match to protein family HMM PF07721; transcriptional regulator complement(355916..358708) Mycobacterium smegmatis str. MC2 155 4534898 YP_884736.1 CDS MSMEG_0323 NC_008596.1 359235 360470 R identified by match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(359235..360470) Mycobacterium smegmatis str. MC2 155 4531473 YP_884737.1 CDS MSMEG_0324 NC_008596.1 360723 361178 D identified by match to protein family HMM PF07366; match to protein family HMM TIGR02096; hypothetical protein 360723..361178 Mycobacterium smegmatis str. MC2 155 4536024 YP_884738.1 CDS MSMEG_0325 NC_008596.1 361191 361703 D identified by match to protein family HMM TIGR02096; hypothetical protein 361191..361703 Mycobacterium smegmatis str. MC2 155 4535379 YP_884739.1 CDS MSMEG_0326 NC_008596.1 361710 363317 D identified by match to protein family HMM PF00501; AMP-dependent synthetase/ligase 361710..363317 Mycobacterium smegmatis str. MC2 155 4531173 YP_884740.1 CDS MSMEG_0327 NC_008596.1 363333 364835 D identified by match to protein family HMM PF00171; aldehyde dehydrogenase 363333..364835 Mycobacterium smegmatis str. MC2 155 4531463 YP_884741.1 CDS MSMEG_0328 NC_008596.1 364857 365306 D hypothetical protein 364857..365306 Mycobacterium smegmatis str. MC2 155 4535426 YP_884742.1 CDS MSMEG_0329 NC_008596.1 365303 365797 D identified by match to protein family HMM PF01613; FMN oxidoreductase 365303..365797 Mycobacterium smegmatis str. MC2 155 4535219 YP_884743.1 CDS MSMEG_0330 NC_008596.1 365798 366985 R identified by match to protein family HMM PF00196; LuxR family transcriptional regulator complement(365798..366985) Mycobacterium smegmatis str. MC2 155 4536536 YP_884744.1 CDS MSMEG_0331 NC_008596.1 366982 368034 R identified by match to protein family HMM PF00196; match to protein family HMM PF01590; LuxR family transcriptional regulator complement(366982..368034) Mycobacterium smegmatis str. MC2 155 4531064 YP_884745.1 CDS MSMEG_0332 NC_008596.1 368223 369158 D identified by match to protein family HMM PF03060; 2-nitropropane dioxygenase 368223..369158 Mycobacterium smegmatis str. MC2 155 4532130 YP_884746.1 CDS MSMEG_0333 NC_008596.1 369275 370873 D identified by match to protein family HMM PF01039; carboxyl transferase domain-containing protein 369275..370873 Mycobacterium smegmatis str. MC2 155 4535910 YP_884747.1 CDS MSMEG_0334 NC_008596.1 370879 372888 D identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF01071; match to protein family HMM PF02785; match to protein family HMM PF02786; acetyl-/propionyl-coenzyme A carboxylase subunit alpha 370879..372888 Mycobacterium smegmatis str. MC2 155 4532399 YP_884748.1 CDS MSMEG_0335 NC_008596.1 372885 373643 D identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase 372885..373643 Mycobacterium smegmatis str. MC2 155 4534100 YP_884749.1 CDS MSMEG_0336 NC_008596.1 373643 374437 D identified by match to protein family HMM TIGR03083; match to protein family HMM TIGR03084; hypothetical protein 373643..374437 Mycobacterium smegmatis str. MC2 155 4534665 YP_884750.1 CDS MSMEG_0337 NC_008596.1 374434 376188 D identified by match to protein family HMM PF07287; hypothetical protein 374434..376188 Mycobacterium smegmatis str. MC2 155 4537607 YP_884751.1 CDS MSMEG_0338 NC_008596.1 376204 377340 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 376204..377340 Mycobacterium smegmatis str. MC2 155 4535785 YP_884752.1 CDS MSMEG_0339 NC_008596.1 377377 378393 D identified by match to protein family HMM PF00296; FMN-dependent monooxygenase 377377..378393 Mycobacterium smegmatis str. MC2 155 4530910 YP_884753.1 CDS MSMEG_0340 NC_008596.1 378402 379154 D identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase 378402..379154 Mycobacterium smegmatis str. MC2 155 4530852 YP_884754.1 CDS MSMEG_0341 NC_008596.1 379158 380174 R identified by match to protein family HMM PF00296; hypothetical protein complement(379158..380174) Mycobacterium smegmatis str. MC2 155 4534414 YP_884755.1 CDS MSMEG_0342 NC_008596.1 380208 381053 R hypothetical protein complement(380208..381053) Mycobacterium smegmatis str. MC2 155 4532413 YP_884756.1 CDS MSMEG_0343 NC_008596.1 381177 381809 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(381177..381809) Mycobacterium smegmatis str. MC2 155 4533254 YP_884757.1 CDS MSMEG_0344 NC_008596.1 382067 382837 D identified by match to protein family HMM PF02405; hypothetical protein 382067..382837 Mycobacterium smegmatis str. MC2 155 4537196 YP_884758.1 CDS MSMEG_0345 NC_008596.1 382881 383699 D identified by match to protein family HMM PF02405; hypothetical protein 382881..383699 Mycobacterium smegmatis str. MC2 155 4534115 YP_884759.1 CDS MSMEG_0346 NC_008596.1 383703 385127 D identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor 383703..385127 Mycobacterium smegmatis str. MC2 155 4531711 YP_884760.1 CDS MSMEG_0347 NC_008596.1 385157 386185 D identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor Mce family protein 385157..386185 Mycobacterium smegmatis str. MC2 155 4535948 YP_884761.1 CDS MSMEG_0348 NC_008596.1 386170 387498 D identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; mce-family protein mce3c 386170..387498 Mycobacterium smegmatis str. MC2 155 4534300 YP_884762.1 CDS MSMEG_0349 NC_008596.1 387495 388796 D identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor mce family protein 387495..388796 Mycobacterium smegmatis str. MC2 155 4533961 YP_884763.1 CDS MSMEG_0350 NC_008596.1 388793 389932 D identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor Mce family protein 388793..389932 Mycobacterium smegmatis str. MC2 155 4534690 YP_884764.1 CDS MSMEG_0351 NC_008596.1 389934 391421 D identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor mce family protein 389934..391421 Mycobacterium smegmatis str. MC2 155 4531853 YP_884765.1 CDS MSMEG_0352 NC_008596.1 391385 391987 D hypothetical protein 391385..391987 Mycobacterium smegmatis str. MC2 155 4531217 YP_884766.1 CDS MSMEG_0353 NC_008596.1 392047 392592 D hypothetical protein 392047..392592 Mycobacterium smegmatis str. MC2 155 4531022 YP_884767.1 CDS MSMEG_0354 NC_008596.1 392616 392957 D identified by match to protein family HMM PF05305; hypothetical protein 392616..392957 Mycobacterium smegmatis str. MC2 155 4536502 YP_884768.1 CDS MSMEG_0355 NC_008596.1 392954 393448 D hypothetical protein 392954..393448 Mycobacterium smegmatis str. MC2 155 4533978 YP_884769.1 CDS MSMEG_0356 NC_008596.1 393601 393897 R acetyltransferase complement(393601..393897) Mycobacterium smegmatis str. MC2 155 4531672 YP_884770.1 CDS MSMEG_0357 NC_008596.1 394013 395614 D identified by match to protein family HMM PF05977; match to protein family HMM PF07690; transmembrane transporter 394013..395614 Mycobacterium smegmatis str. MC2 155 4533532 YP_884771.1 CDS MSMEG_0358 NC_008596.1 395654 396616 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 395654..396616 Mycobacterium smegmatis str. MC2 155 4534928 YP_884772.1 CDS MSMEG_0359 NC_008596.1 396891 401135 R hypothetical protein complement(396891..401135) Mycobacterium smegmatis str. MC2 155 4533183 YP_884773.1 CDS MSMEG_0360 NC_008596.1 401170 401343 R hypothetical protein complement(401170..401343) Mycobacterium smegmatis str. MC2 155 4537100 YP_884774.1 CDS MSMEG_0361 NC_008596.1 401448 402611 D identified by match to protein family HMM PF00933; glycosyl hydrolase 401448..402611 Mycobacterium smegmatis str. MC2 155 4534680 YP_884775.1 CDS MSMEG_0362 NC_008596.1 402623 403786 R identified by match to protein family HMM PF04909; amidohydrolase complement(402623..403786) Mycobacterium smegmatis str. MC2 155 4533547 YP_884776.1 CDS MSMEG_0363 NC_008596.1 403864 404502 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 403864..404502 Mycobacterium smegmatis str. MC2 155 4536989 YP_884777.1 CDS MSMEG_0364 NC_008596.1 404569 404868 D hypothetical protein 404569..404868 Mycobacterium smegmatis str. MC2 155 4531871 YP_884778.1 CDS MSMEG_0365 NC_008596.1 404871 406751 D identified by match to protein family HMM PF06259; hypothetical protein 404871..406751 Mycobacterium smegmatis str. MC2 155 4534421 YP_884779.1 CDS MSMEG_0366 NC_008596.1 406748 407275 D hypothetical protein 406748..407275 Mycobacterium smegmatis str. MC2 155 4533000 YP_884780.1 CDS MSMEG_0367 NC_008596.1 407282 408355 R identified by match to protein family HMM PF00891; O-demethylpuromycin-O-methyltransferase complement(407282..408355) Mycobacterium smegmatis str. MC2 155 4535833 YP_884781.1 CDS MSMEG_0368 NC_008596.1 408516 409982 D hypothetical protein 408516..409982 Mycobacterium smegmatis str. MC2 155 4533459 YP_884782.1 CDS MSMEG_0369 NC_008596.1 409979 410701 D hypothetical protein 409979..410701 Mycobacterium smegmatis str. MC2 155 4532693 YP_884783.1 CDS MSMEG_0370 NC_008596.1 410691 414047 D hypothetical protein 410691..414047 Mycobacterium smegmatis str. MC2 155 4533889 YP_884784.1 CDS MSMEG_0371 NC_008596.1 414063 414920 R identified by match to protein family HMM PF01575; MaoC like domain-containing protein complement(414063..414920) Mycobacterium smegmatis str. MC2 155 4537127 YP_884785.1 CDS fabG NC_008596.1 414922 416274 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(414922..416274) Mycobacterium smegmatis str. MC2 155 4536408 YP_884786.1 CDS MSMEG_0373 NC_008596.1 416355 417653 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 416355..417653 Mycobacterium smegmatis str. MC2 155 4535040 YP_884787.1 CDS MSMEG_0374 NC_008596.1 418197 420065 R identified by match to protein family HMM PF01565; match to protein family HMM PF02913; glycolate oxidase subunit complement(418197..420065) Mycobacterium smegmatis str. MC2 155 4534721 YP_884788.1 CDS MSMEG_0375 NC_008596.1 420213 421805 R identified by match to protein family HMM PF00614; phospholipase D complement(420213..421805) Mycobacterium smegmatis str. MC2 155 4534902 YP_884789.1 CDS MSMEG_0376 NC_008596.1 421882 422928 D identified by match to protein family HMM PF00165; match to protein family HMM PF01965; AraC family transcriptional regulator 421882..422928 Mycobacterium smegmatis str. MC2 155 4536814 YP_884790.1 CDS MSMEG_0377 NC_008596.1 422996 423736 D nitrile hydratase 422996..423736 Mycobacterium smegmatis str. MC2 155 4532402 YP_884791.1 CDS nthA NC_008596.1 423733 424353 D identified by match to protein family HMM PF02979; match to protein family HMM TIGR01323; nitrile hydratase subunit alpha 423733..424353 Mycobacterium smegmatis str. MC2 155 4535989 YP_884792.1 CDS MSMEG_0379 NC_008596.1 424350 424631 D nitrile hydratase activator P14k 424350..424631 Mycobacterium smegmatis str. MC2 155 4533854 YP_884793.1 CDS MSMEG_0380 NC_008596.1 425344 425763 D identified by match to protein family HMM PF05423; MmpS4 protein 425344..425763 Mycobacterium smegmatis str. MC2 155 4537362 YP_884794.1 CDS MSMEG_0381 NC_008596.1 425760 428642 D identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833; Mmp14a protein 425760..428642 Mycobacterium smegmatis str. MC2 155 4534470 YP_884795.1 CDS MSMEG_0382 NC_008596.1 428652 431636 D identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833; transporter 428652..431636 Mycobacterium smegmatis str. MC2 155 4532509 YP_884796.1 CDS MSMEG_0383 NC_008596.1 431707 432045 R hypothetical protein complement(431707..432045) Mycobacterium smegmatis str. MC2 155 4532740 YP_884797.1 CDS rfbA NC_008596.1 432229 433095 R identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase complement(432229..433095) Mycobacterium smegmatis str. MC2 155 4531375 YP_884798.1 CDS MSMEG_0385 NC_008596.1 433614 434870 D identified by match to protein family HMM PF03033; glycosyl transferase family protein 433614..434870 Mycobacterium smegmatis str. MC2 155 4537068 YP_884799.1 CDS MSMEG_0386 NC_008596.1 434928 436061 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD dependent epimerase/dehydratase 434928..436061 Mycobacterium smegmatis str. MC2 155 4534922 YP_884800.1 CDS MSMEG_0387 NC_008596.1 436310 437044 D Rmt2 protein 436310..437044 Mycobacterium smegmatis str. MC2 155 4537497 YP_884801.1 CDS tylF NC_008596.1 437374 438096 D identified by match to protein family HMM PF05711; macrocin-O-methyltransferase 437374..438096 Mycobacterium smegmatis str. MC2 155 4536181 YP_884802.1 CDS MSMEG_0389 NC_008596.1 438130 439398 D identified by match to protein family HMM PF03033; glycosyl transferase family protein 438130..439398 Mycobacterium smegmatis str. MC2 155 4531902 YP_884803.1 CDS MSMEG_0390 NC_008596.1 439605 440687 D identified by match to protein family HMM PF01757; acyltransferase 439605..440687 Mycobacterium smegmatis str. MC2 155 4537309 YP_884804.1 CDS MSMEG_0391 NC_008596.1 440861 441649 D Rmt3 protein 440861..441649 Mycobacterium smegmatis str. MC2 155 4530873 YP_884805.1 CDS MSMEG_0392 NC_008596.1 441687 443201 R identified by match to protein family HMM PF03033; glycosyl transferase family protein complement(441687..443201) Mycobacterium smegmatis str. MC2 155 4530881 YP_884806.1 CDS MSMEG_0393 NC_008596.1 443164 443967 D Fmt protein 443164..443967 Mycobacterium smegmatis str. MC2 155 4533018 YP_884807.1 CDS MSMEG_0394 NC_008596.1 444075 444329 D hypothetical protein 444075..444329 Mycobacterium smegmatis str. MC2 155 4532967 YP_884808.1 CDS MSMEG_0395 NC_008596.1 444662 444796 D hypothetical protein 444662..444796 Mycobacterium smegmatis str. MC2 155 4532093 YP_884809.1 CDS MSMEG_0396 NC_008596.1 445187 445585 R hypothetical protein complement(445187..445585) Mycobacterium smegmatis str. MC2 155 4531769 YP_884810.1 CDS MSMEG_0397 NC_008596.1 445304 446626 D identified by similarity to GP:150005; match to protein family HMM PF01610; IS1096, tnpA protein 445304..446626 Mycobacterium smegmatis str. MC2 155 4535053 YP_884811.1 CDS MSMEG_0398 NC_008596.1 446634 447335 R identified by similarity to GP:150004; match to protein family HMM PF07929; IS1096, tnpR protein complement(446634..447335) Mycobacterium smegmatis str. MC2 155 4532529 YP_884812.1 CDS MSMEG_0399 NC_008596.1 447638 447868 D identified by match to protein family HMM PF03621; hypothetical protein 447638..447868 Mycobacterium smegmatis str. MC2 155 4533485 YP_884813.1 CDS MSMEG_0400 NC_008596.1 447897 455186 D identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733; peptide synthetase 447897..455186 Mycobacterium smegmatis str. MC2 155 4536315 YP_884814.1 CDS MSMEG_0401 NC_008596.1 455186 458191 D identified by match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; non-ribosomal peptide synthase 455186..458191 Mycobacterium smegmatis str. MC2 155 4537449 YP_884815.1 CDS MSMEG_0402 NC_008596.1 458188 465867 D identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733; match to protein family HMM TIGR01746; linear gramicidin synthetase subunit D 458188..465867 Mycobacterium smegmatis str. MC2 155 4533089 YP_884816.1 CDS MSMEG_0403 NC_008596.1 465884 466702 D integral membrane protein 465884..466702 Mycobacterium smegmatis str. MC2 155 4536676 YP_884817.1 CDS MSMEG_0404 NC_008596.1 466804 467214 D identified by match to protein family HMM PF04946; sigma associated protein 466804..467214 Mycobacterium smegmatis str. MC2 155 4537625 YP_884818.1 CDS MSMEG_0405 NC_008596.1 467223 468398 D identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; extra cytoplasmic sigma factor 467223..468398 Mycobacterium smegmatis str. MC2 155 4536088 YP_884819.1 CDS MSMEG_0406 NC_008596.1 468441 470276 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase complement(468441..470276) Mycobacterium smegmatis str. MC2 155 4534136 YP_884820.1 CDS MSMEG_0407 NC_008596.1 470514 471602 D identified by match to protein family HMM PF01113; hypothetical protein 470514..471602 Mycobacterium smegmatis str. MC2 155 4532356 YP_884821.1 CDS MSMEG_0408 NC_008596.1 471613 482571 R identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801; type I modular polyketide synthase complement(471613..482571) Mycobacterium smegmatis str. MC2 155 4536483 YP_884822.1 CDS MSMEG_0409 NC_008596.1 482813 484234 D identified by match to protein family HMM PF00668; condensation domain-containing protein 482813..484234 Mycobacterium smegmatis str. MC2 155 4531818 YP_884823.1 CDS MSMEG_0410 NC_008596.1 484268 487276 D identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833; MmpL protein 484268..487276 Mycobacterium smegmatis str. MC2 155 4532429 YP_884824.1 CDS MSMEG_0411 NC_008596.1 487386 489095 D activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 487386..489095 Mycobacterium smegmatis str. MC2 155 4535411 YP_884825.1 CDS MSMEG_0412 NC_008596.1 489157 490308 D hypothetical protein 489157..490308 Mycobacterium smegmatis str. MC2 155 4536458 YP_884826.1 CDS MSMEG_0413 NC_008596.1 490313 490990 R hypothetical protein complement(490313..490990) Mycobacterium smegmatis str. MC2 155 4535967 YP_884827.1 CDS MSMEG_0414 NC_008596.1 491026 492051 D identified by match to protein family HMM PF03171; oxidoreductase, 2OG-Fe(II) oxygenase 491026..492051 Mycobacterium smegmatis str. MC2 155 4533084 YP_884828.1 CDS MSMEG_0415 NC_008596.1 492065 492550 D identified by match to protein family HMM PF01613; NADH-FMN oxidoreductase 492065..492550 Mycobacterium smegmatis str. MC2 155 4537062 YP_884829.1 CDS MSMEG_0416 NC_008596.1 492595 492756 R hypothetical protein complement(492595..492756) Mycobacterium smegmatis str. MC2 155 4536841 YP_884830.1 CDS MSMEG_0417 NC_008596.1 492834 493583 R catalyzes the fumarate and succinate interconversion; fumarate reductase is used under anaerobic conditions with glucose or glycerol as carbon source; fumarate reductase iron-sulfur subunit complement(492834..493583) Mycobacterium smegmatis str. MC2 155 4533264 YP_884831.1 CDS sdhA NC_008596.1 493585 495492 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(493585..495492) Mycobacterium smegmatis str. MC2 155 4537065 YP_884832.1 CDS MSMEG_0419 NC_008596.1 495575 496396 R integral membrane protein complement(495575..496396) Mycobacterium smegmatis str. MC2 155 4537295 YP_884833.1 CDS MSMEG_0420 NC_008596.1 496449 496745 R hypothetical protein complement(496449..496745) Mycobacterium smegmatis str. MC2 155 4536443 YP_884834.1 CDS MSMEG_0421 NC_008596.1 496794 496940 D hypothetical protein 496794..496940 Mycobacterium smegmatis str. MC2 155 4537092 YP_884835.1 CDS MSMEG_0422 NC_008596.1 497010 497777 D transferase 497010..497777 Mycobacterium smegmatis str. MC2 155 4535340 YP_884836.1 CDS MSMEG_0423 NC_008596.1 497860 498360 D hypothetical protein 497860..498360 Mycobacterium smegmatis str. MC2 155 4537581 YP_884837.1 CDS MSMEG_0424 NC_008596.1 498438 498875 R identified by match to protein family HMM PF00011; Hsp20/alpha crystallin family protein complement(498438..498875) Mycobacterium smegmatis str. MC2 155 4537438 YP_884838.1 CDS MSMEG_0425 NC_008596.1 498953 499888 R identified by match to protein family HMM PF00892; membrane protein DcsA complement(498953..499888) Mycobacterium smegmatis str. MC2 155 4536928 YP_884839.1 CDS MSMEG_0426 NC_008596.1 499923 501296 D identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 499923..501296 Mycobacterium smegmatis str. MC2 155 4533223 YP_884840.1 CDS nirB NC_008596.1 501440 504019 D identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374; nitrite reductase [NAD(P)H], large subunit 501440..504019 Mycobacterium smegmatis str. MC2 155 4535788 YP_884841.1 CDS MSMEG_0428 NC_008596.1 504016 504384 D nitrite reductase [NAD(P)H] small subunit 504016..504384 Mycobacterium smegmatis str. MC2 155 4534703 YP_884842.1 CDS MSMEG_0429 NC_008596.1 504399 504641 R ferric uptake regulator complement(504399..504641) Mycobacterium smegmatis str. MC2 155 4535353 YP_884843.1 CDS MSMEG_0430 NC_008596.1 505025 506392 D identified by similarity to GP:150005; match to protein family HMM PF01610; ISMsm4, transposase 505025..506392 Mycobacterium smegmatis str. MC2 155 4531058 YP_884844.1 CDS MSMEG_0431 NC_008596.1 506807 507502 R identified by match to protein family HMM PF01903; hypothetical protein complement(506807..507502) Mycobacterium smegmatis str. MC2 155 4534659 YP_884845.1 CDS MSMEG_0432 NC_008596.1 507499 508656 R catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; bifunctional uroporphyrinogen-III synthetase/response regulator domain-containing protein complement(507499..508656) Mycobacterium smegmatis str. MC2 155 4532901 YP_884846.1 CDS MSMEG_0433 NC_008596.1 508691 510100 R identified by match to protein family HMM PF07690; nitrite extrusion protein complement(508691..510100) Mycobacterium smegmatis str. MC2 155 4536969 YP_884847.1 CDS MSMEG_0434 NC_008596.1 510209 510841 R identified by match to protein family HMM PF00583; aminoglycoside 2'-N-acetyltransferase complement(510209..510841) Mycobacterium smegmatis str. MC2 155 4534780 YP_884848.1 CDS MSMEG_0435 NC_008596.1 510873 511757 R identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724; allophanate hydrolase subunit 2 complement(510873..511757) Mycobacterium smegmatis str. MC2 155 4532597 YP_884849.1 CDS MSMEG_0436 NC_008596.1 511773 512405 R identified by match to protein family HMM PF02682; allophanate hydrolase subunit 1 complement(511773..512405) Mycobacterium smegmatis str. MC2 155 4534541 YP_884850.1 CDS MSMEG_0437 NC_008596.1 512510 513190 R identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697; hypothetical protein complement(512510..513190) Mycobacterium smegmatis str. MC2 155 4531034 YP_884851.1 CDS MSMEG_0438 NC_008596.1 513215 514168 R identified by match to protein family HMM PF01497; periplasmic binding protein complement(513215..514168) Mycobacterium smegmatis str. MC2 155 4531961 YP_884852.1 CDS MSMEG_0439 NC_008596.1 514184 515320 R identified by match to protein family HMM PF03601; hypothetical protein complement(514184..515320) Mycobacterium smegmatis str. MC2 155 4532722 YP_884853.1 CDS MSMEG_0440 NC_008596.1 515317 515415 R hypothetical protein complement(515317..515415) Mycobacterium smegmatis str. MC2 155 4533972 YP_884854.1 CDS MSMEG_0441 NC_008596.1 515471 516199 R identified by match to protein family HMM TIGR03083; hypothetical protein complement(515471..516199) Mycobacterium smegmatis str. MC2 155 4532604 YP_884855.1 CDS MSMEG_0442 NC_008596.1 516209 516811 R identified by match to protein family HMM PF02909; tetracycline repressor domain-containing protein complement(516209..516811) Mycobacterium smegmatis str. MC2 155 4533617 YP_884856.1 CDS MSMEG_0443 NC_008596.1 516901 517893 D identified by match to protein family HMM PF00795; carbon-nitrogen hydrolase 516901..517893 Mycobacterium smegmatis str. MC2 155 4532643 YP_884857.1 CDS MSMEG_0444 NC_008596.1 517901 518923 D identified by match to protein family HMM PF04371; agmatine deiminase 517901..518923 Mycobacterium smegmatis str. MC2 155 4531412 YP_884858.1 CDS MSMEG_0445 NC_008596.1 518920 520557 D identified by match to protein family HMM PF07969; amidohydrolase 518920..520557 Mycobacterium smegmatis str. MC2 155 4535560 YP_884859.1 CDS MSMEG_0446 NC_008596.1 520569 521912 D identified by match to protein family HMM PF00324; putrescine importer 520569..521912 Mycobacterium smegmatis str. MC2 155 4535890 YP_884860.1 CDS MSMEG_0447 NC_008596.1 521987 522406 R identified by match to protein family HMM PF02566; hypothetical protein complement(521987..522406) Mycobacterium smegmatis str. MC2 155 4532375 YP_884861.1 CDS MSMEG_0448 NC_008596.1 522533 522976 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 522533..522976 Mycobacterium smegmatis str. MC2 155 4532585 YP_884862.1 CDS MSMEG_0449 NC_008596.1 522988 524988 R identified by match to protein family HMM PF00582; match to protein family HMM PF07690; transporter major facilitator family protein complement(522988..524988) Mycobacterium smegmatis str. MC2 155 4535122 YP_884863.1 CDS MSMEG_0450 NC_008596.1 525004 525219 D hypothetical protein 525004..525219 Mycobacterium smegmatis str. MC2 155 4535823 YP_884864.1 CDS MSMEG_0451 NC_008596.1 525323 525571 R oxidoreductase, FAD-linked complement(525323..525571) Mycobacterium smegmatis str. MC2 155 4533153 YP_884865.1 CDS MSMEG_0452 NC_008596.1 525610 527055 R identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791; inner membrane permease YgbN complement(525610..527055) Mycobacterium smegmatis str. MC2 155 4537251 YP_884866.1 CDS aroK NC_008596.1 527092 527604 R identified by match to protein family HMM PF01202; match to protein family HMM TIGR01313; shikimate kinase complement(527092..527604) Mycobacterium smegmatis str. MC2 155 4534028 YP_884867.1 CDS MSMEG_0454 NC_008596.1 527730 528464 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 527730..528464 Mycobacterium smegmatis str. MC2 155 4533399 YP_884868.1 CDS MSMEG_0455 NC_008596.1 528536 529963 D identified by match to protein family HMM PF00171; aldehyde dehydrogenase 528536..529963 Mycobacterium smegmatis str. MC2 155 4535806 YP_884869.1 CDS MSMEG_0456 NC_008596.1 529995 532136 R identified by match to protein family HMM PF00521; match to protein family HMM PF03989; DNA gyrase subunit A complement(529995..532136) Mycobacterium smegmatis str. MC2 155 4531732 YP_884870.1 CDS MSMEG_0457 NC_008596.1 532147 534180 R identified by match to protein family HMM PF00986; match to protein family HMM PF02518; DNA topoisomerase IV subunit B complement(532147..534180) Mycobacterium smegmatis str. MC2 155 4534241 YP_884871.1 CDS MSMEG_0458 NC_008596.1 534392 535687 D identified by match to protein family HMM PF02518; match to protein family HMM PF07730; two-component system sensor kinase 534392..535687 Mycobacterium smegmatis str. MC2 155 4534883 YP_884872.1 CDS MSMEG_0459 NC_008596.1 535697 536341 D identified by match to protein family HMM PF00072; match to protein family HMM PF00196; two-component system response regulator 535697..536341 Mycobacterium smegmatis str. MC2 155 4531351 YP_884873.1 CDS MSMEG_0460 NC_008596.1 536353 537297 R identified by match to protein family HMM PF00561; alpha/beta hydrolase complement(536353..537297) Mycobacterium smegmatis str. MC2 155 4531810 YP_884874.1 CDS MSMEG_0461 NC_008596.1 537351 537965 D identified by match to protein family HMM PF01205; CinZ protein 537351..537965 Mycobacterium smegmatis str. MC2 155 4532776 YP_884875.1 CDS MSMEG_0462 NC_008596.1 538102 538545 D identified by match to protein family HMM PF05423; MmpS4 protein 538102..538545 Mycobacterium smegmatis str. MC2 155 4530964 YP_884876.1 CDS MSMEG_0463 NC_008596.1 538542 541427 D identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833; MmpL4 protein 538542..541427 Mycobacterium smegmatis str. MC2 155 4534193 YP_884877.1 CDS MSMEG_0465 NC_008596.1 541484 542098 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 541484..542098 Mycobacterium smegmatis str. MC2 155 4534437 YP_884878.1 CDS MSMEG_0464 NC_008596.1 542092 542898 R catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase complement(542092..542898) Mycobacterium smegmatis str. MC2 155 4536806 YP_884879.1 CDS MSMEG_0466 NC_008596.1 543024 543872 D hypothetical protein 543024..543872 Mycobacterium smegmatis str. MC2 155 4536220 YP_884880.1 CDS MSMEG_0467 NC_008596.1 543882 544481 R identified by match to protein family HMM PF01810; match to protein family HMM TIGR00948; membrane transporter complement(543882..544481) Mycobacterium smegmatis str. MC2 155 4532720 YP_884881.1 CDS MSMEG_0469 NC_008596.1 544595 545467 D identified by match to protein family HMM PF00583; match to protein family HMM PF01047; PadR family transcriptional regulator 544595..545467 Mycobacterium smegmatis str. MC2 155 4533072 YP_884882.1 CDS MSMEG_0468 NC_008596.1 545434 546294 R identified by match to protein family HMM PF00892; integral membrane protein complement(545434..546294) Mycobacterium smegmatis str. MC2 155 4536153 YP_884883.1 CDS MSMEG_0471 NC_008596.1 546423 547280 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 546423..547280 Mycobacterium smegmatis str. MC2 155 4533915 YP_884884.1 CDS MSMEG_0470 NC_008596.1 547268 548872 R identified by match to protein family HMM PF00135; para-nitrobenzyl esterase complement(547268..548872) Mycobacterium smegmatis str. MC2 155 4534411 YP_884885.1 CDS MSMEG_0472 NC_008596.1 548983 549768 R lipoprotein complement(548983..549768) Mycobacterium smegmatis str. MC2 155 4537039 YP_884886.1 CDS MSMEG_0473 NC_008596.1 550350 551168 D identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family transcriptional regulator 550350..551168 Mycobacterium smegmatis str. MC2 155 4534337 YP_884887.1 CDS MSMEG_0474 NC_008596.1 551334 553121 D identified by match to protein family HMM PF00310; match to protein family HMM PF01380; glucosamine--fructose-6-phosphate aminotransferase (isomerizing) 551334..553121 Mycobacterium smegmatis str. MC2 155 4537378 YP_884888.1 CDS MSMEG_0475 NC_008596.1 553181 554419 D identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; nucleotide-sugar dehydrogenase 553181..554419 Mycobacterium smegmatis str. MC2 155 4535754 YP_884889.1 CDS MSMEG_0476 NC_008596.1 554422 555717 D identified by match to protein family HMM PF00535; match to protein family HMM PF03142; chitin synthase 554422..555717 Mycobacterium smegmatis str. MC2 155 4532625 YP_884890.1 CDS MSMEG_0478 NC_008596.1 555747 557249 D identified by match to protein family HMM PF01522; hypothetical protein 555747..557249 Mycobacterium smegmatis str. MC2 155 4536534 YP_884891.1 CDS MSMEG_0477 NC_008596.1 557246 557977 R hypothetical protein complement(557246..557977) Mycobacterium smegmatis str. MC2 155 4532390 YP_884892.1 CDS MSMEG_0479 NC_008596.1 557252 557959 D hypothetical protein 557252..557959 Mycobacterium smegmatis str. MC2 155 4536146 YP_884893.1 CDS MSMEG_0480 NC_008596.1 557995 558654 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator complement(557995..558654) Mycobacterium smegmatis str. MC2 155 4535138 YP_884894.1 CDS MSMEG_0481 NC_008596.1 558749 560095 D identified by match to protein family HMM PF01266; FAD dependent oxidoreductase 558749..560095 Mycobacterium smegmatis str. MC2 155 4535853 YP_884895.1 CDS MSMEG_0482 NC_008596.1 560092 561786 D identified by match to protein family HMM PF00920; dihydroxy-acid dehydratase 560092..561786 Mycobacterium smegmatis str. MC2 155 4534820 YP_884896.1 CDS MSMEG_0483 NC_008596.1 561813 563186 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; shikimate transporter 561813..563186 Mycobacterium smegmatis str. MC2 155 4537668 YP_884897.1 CDS MSMEG_0484 NC_008596.1 563191 564300 R identified by match to protein family HMM PF03069; formamidase complement(563191..564300) Mycobacterium smegmatis str. MC2 155 4536497 YP_884898.1 CDS MSMEG_0485 NC_008596.1 564297 565826 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(564297..565826) Mycobacterium smegmatis str. MC2 155 4533964 YP_884899.1 CDS MSMEG_0486 NC_008596.1 565863 566894 R ABC transporter periplasmic protein complement(565863..566894) Mycobacterium smegmatis str. MC2 155 4533857 YP_884900.1 CDS MSMEG_0487 NC_008596.1 566907 567740 R identified by match to protein family HMM PF00528; ABC transporter permease complement(566907..567740) Mycobacterium smegmatis str. MC2 155 4535083 YP_884901.1 CDS MSMEG_0488 NC_008596.1 567784 568551 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(567784..568551) Mycobacterium smegmatis str. MC2 155 4532169 YP_884902.1 CDS MSMEG_0489 NC_008596.1 568865 570037 D identified by match to protein family HMM PF02515; racemase 568865..570037 Mycobacterium smegmatis str. MC2 155 4535079 YP_884903.1 CDS MSMEG_0490 NC_008596.1 570034 570816 D identified by match to protein family HMM PF00378; enoyl-CoA hydratase 570034..570816 Mycobacterium smegmatis str. MC2 155 4534688 YP_884904.1 CDS MSMEG_0491 NC_008596.1 570847 571875 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; LacI family transcriptional regulator complement(570847..571875) Mycobacterium smegmatis str. MC2 155 4531255 YP_884905.1 CDS MSMEG_0492 NC_008596.1 571918 572553 R hypothetical protein complement(571918..572553) Mycobacterium smegmatis str. MC2 155 4533121 YP_884906.1 CDS MSMEG_0493 NC_008596.1 572636 572803 R hypothetical protein complement(572636..572803) Mycobacterium smegmatis str. MC2 155 4532724 YP_884907.1 CDS MSMEG_0494 NC_008596.1 573002 573169 R hypothetical protein complement(573002..573169) Mycobacterium smegmatis str. MC2 155 4537582 YP_884908.1 CDS MSMEG_0496 NC_008596.1 574846 575205 R coenzyme B12-dependent glycerol dehydrogenase small subunit complement(574846..575205) Mycobacterium smegmatis str. MC2 155 4536023 YP_884909.1 CDS MSMEG_0497 NC_008596.1 575202 577466 R identified by match to protein family HMM PF02286; glycerol dehydratase large subunit complement(575202..577466) Mycobacterium smegmatis str. MC2 155 4532750 YP_884910.1 CDS MSMEG_0498 NC_008596.1 577603 577719 R hypothetical protein complement(577603..577719) Mycobacterium smegmatis str. MC2 155 4536844 YP_884911.1 CDS MSMEG_0499 NC_008596.1 577723 579150 D identified by match to protein family HMM PF00324; amino acid permease 577723..579150 Mycobacterium smegmatis str. MC2 155 4536656 YP_884912.1 CDS MSMEG_0500 NC_008596.1 579284 580351 D identified by match to protein family HMM PF07905; regulator of polyketide synthase expression 579284..580351 Mycobacterium smegmatis str. MC2 155 4533046 YP_884913.1 CDS MSMEG_0501 NC_008596.1 580361 581107 R identified by match to protein family HMM PF01182; glucosamine-6-phosphate deaminase 1 complement(580361..581107) Mycobacterium smegmatis str. MC2 155 4537678 YP_884914.1 CDS MSMEG_0502 NC_008596.1 581104 582480 R identified by match to protein family HMM PF02056; glucosidase complement(581104..582480) Mycobacterium smegmatis str. MC2 155 4537332 YP_884915.1 CDS MSMEG_0503 NC_008596.1 582477 583253 R identified by match to protein family HMM PF00455; match to protein family HMM PF08220; DeoR family transcriptional regulator complement(582477..583253) Mycobacterium smegmatis str. MC2 155 4532987 YP_884916.1 CDS MSMEG_0504 NC_008596.1 583427 584413 D identified by match to protein family HMM PF00294; carbohydrate kinase 583427..584413 Mycobacterium smegmatis str. MC2 155 4537214 YP_884917.1 CDS MSMEG_0505 NC_008596.1 584410 585780 D identified by match to protein family HMM PF01547; sugar ABC transporter substrate-binding protein 584410..585780 Mycobacterium smegmatis str. MC2 155 4535670 YP_884918.1 CDS MSMEG_0506 NC_008596.1 585885 586739 D identified by match to protein family HMM PF00528; ABC transporter permease 585885..586739 Mycobacterium smegmatis str. MC2 155 4537268 YP_884919.1 CDS MSMEG_0507 NC_008596.1 586736 587560 D identified by match to protein family HMM PF00528; sugar ABC transporter permease 586736..587560 Mycobacterium smegmatis str. MC2 155 4533064 YP_884920.1 CDS MSMEG_0508 NC_008596.1 587587 588657 D identified by match to protein family HMM PF00005; match to protein family HMM PF03459; glycerol-phosphate porter 587587..588657 Mycobacterium smegmatis str. MC2 155 4536801 YP_884921.1 CDS MSMEG_0509 NC_008596.1 588742 589527 R identified by match to protein family HMM PF00455; match to protein family HMM PF01022; match to protein family HMM PF08220; transcriptional regulatory protein complement(588742..589527) Mycobacterium smegmatis str. MC2 155 4531947 YP_884922.1 CDS MSMEG_0510 NC_008596.1 589666 590988 D identified by match to protein family HMM PF08013; match to protein family HMM TIGR02810; D-tagatose-bisphosphate aldolase non-catalytic subunit 589666..590988 Mycobacterium smegmatis str. MC2 155 4531021 YP_884923.1 CDS MSMEG_0511 NC_008596.1 590985 592127 D identified by match to protein family HMM PF01380; sugar isomerase 590985..592127 Mycobacterium smegmatis str. MC2 155 4537267 YP_884924.1 CDS MSMEG_0512 NC_008596.1 592124 593104 D identified by match to protein family HMM PF01869; BadF/BadG/BcrA/BcrD ATPase 592124..593104 Mycobacterium smegmatis str. MC2 155 4535321 YP_884925.1 CDS MSMEG_0513 NC_008596.1 593126 594091 D identified by match to protein family HMM PF00892; integral membrane protein 593126..594091 Mycobacterium smegmatis str. MC2 155 4532036 YP_884926.1 CDS MSMEG_0514 NC_008596.1 594088 595401 D identified by match to protein family HMM PF02056; alpha-galactosidase 594088..595401 Mycobacterium smegmatis str. MC2 155 4535310 YP_884927.1 CDS MSMEG_0515 NC_008596.1 595444 596721 D identified by match to protein family HMM PF01547; sugar transporter sugar binding lipoprotein 595444..596721 Mycobacterium smegmatis str. MC2 155 4531300 YP_884928.1 CDS MSMEG_0516 NC_008596.1 596736 597647 D identified by match to protein family HMM PF00528; sugar transporter 596736..597647 Mycobacterium smegmatis str. MC2 155 4536169 YP_884929.1 CDS MSMEG_0517 NC_008596.1 597644 598570 D identified by match to protein family HMM PF00528; sugar binding-protein dependent transporter system permease 597644..598570 Mycobacterium smegmatis str. MC2 155 4534112 YP_884930.1 CDS MSMEG_0518 NC_008596.1 598612 599718 D identified by match to protein family HMM PF00005; sn-glycerol-3-phosphate ABC transporter ATPase 598612..599718 Mycobacterium smegmatis str. MC2 155 4534603 YP_884931.1 CDS MSMEG_0519 NC_008596.1 599806 599922 D hypothetical protein 599806..599922 Mycobacterium smegmatis str. MC2 155 4533761 YP_884932.1 CDS MSMEG_0520 NC_008596.1 600086 600733 D porin 600086..600733 Mycobacterium smegmatis str. MC2 155 4531530 YP_884933.1 CDS MSMEG_0522 NC_008596.1 601925 602077 D pp24 protein 601925..602077 Mycobacterium smegmatis str. MC2 155 4536229 YP_884934.1 CDS MSMEG_0523 NC_008596.1 602113 603006 R DNA-binding protein complement(602113..603006) Mycobacterium smegmatis str. MC2 155 4537505 YP_884935.1 CDS MSMEG_0524 NC_008596.1 603036 603863 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase complement(603036..603863) Mycobacterium smegmatis str. MC2 155 4537730 YP_884936.1 CDS MSMEG_0525 NC_008596.1 603897 604079 D hypothetical protein 603897..604079 Mycobacterium smegmatis str. MC2 155 4530961 YP_884937.1 CDS MSMEG_0526 NC_008596.1 604076 605674 D identified by match to protein family HMM PF00732; match to protein family HMM PF05199; oxidoreductase, GMC family protein 604076..605674 Mycobacterium smegmatis str. MC2 155 4532220 YP_884938.1 CDS MSMEG_0527 NC_008596.1 605757 606500 D identified by match to protein family HMM PF00106; 2-hydroxycyclohexnecarboxyl-CoA dehydrogenase 605757..606500 Mycobacterium smegmatis str. MC2 155 4534961 YP_884939.1 CDS MSMEG_0528 NC_008596.1 606524 607450 D identified by match to protein family HMM PF00296; hypothetical protein 606524..607450 Mycobacterium smegmatis str. MC2 155 4532701 YP_884940.1 CDS MSMEG_0529 NC_008596.1 607494 610940 R identified by match to protein family HMM PF00069; match to protein family HMM PF07721; serine/threonine protein kinase complement(607494..610940) Mycobacterium smegmatis str. MC2 155 4532549 YP_884941.1 CDS MSMEG_0530 NC_008596.1 611055 611756 R identified by match to protein family HMM PF00106; short chain dehydrogenase complement(611055..611756) Mycobacterium smegmatis str. MC2 155 4532930 YP_884942.1 CDS MSMEG_0531 NC_008596.1 611979 613190 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(611979..613190) Mycobacterium smegmatis str. MC2 155 4535532 YP_884943.1 CDS MSMEG_0532 NC_008596.1 613219 613836 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(613219..613836) Mycobacterium smegmatis str. MC2 155 4536725 YP_884944.1 CDS MSMEG_0533 NC_008596.1 613901 614440 R gp236 protein complement(613901..614440) Mycobacterium smegmatis str. MC2 155 4536778 YP_884945.1 CDS MSMEG_0534 NC_008596.1 614551 615804 R identified by match to protein family HMM PF07690; permease, major facilitator family protein complement(614551..615804) Mycobacterium smegmatis str. MC2 155 4536998 YP_884946.1 CDS MSMEG_0535 NC_008596.1 615801 616439 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator complement(615801..616439) Mycobacterium smegmatis str. MC2 155 4536056 YP_884947.1 CDS MSMEG_0536 NC_008596.1 616498 617064 R identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382; intracellular protease PfpI family protein complement(616498..617064) Mycobacterium smegmatis str. MC2 155 4532482 YP_884948.1 CDS MSMEG_0537 NC_008596.1 617136 617564 R hypothetical protein complement(617136..617564) Mycobacterium smegmatis str. MC2 155 4531536 YP_884949.1 CDS MSMEG_0538 NC_008596.1 617579 618070 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(617579..618070) Mycobacterium smegmatis str. MC2 155 4535333 YP_884950.1 CDS MSMEG_0539 NC_008596.1 618144 618818 R identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp/Fnr family transcriptional regulator protein complement(618144..618818) Mycobacterium smegmatis str. MC2 155 4536525 YP_884951.1 CDS MSMEG_0540 NC_008596.1 618988 619611 D identified by match to protein family HMM PF04299; transcriptional regulator 618988..619611 Mycobacterium smegmatis str. MC2 155 4537022 YP_884952.1 CDS MSMEG_0541 NC_008596.1 619744 620037 D hypothetical protein 619744..620037 Mycobacterium smegmatis str. MC2 155 4534026 YP_884953.1 CDS MSMEG_0542 NC_008596.1 620034 620738 D identified by match to protein family HMM PF03861; ANTAR domain-containing protein 620034..620738 Mycobacterium smegmatis str. MC2 155 4532981 YP_884954.1 CDS MSMEG_0544 NC_008596.1 620809 621762 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 620809..621762 Mycobacterium smegmatis str. MC2 155 4535598 YP_884955.1 CDS MSMEG_0543 NC_008596.1 621750 622790 R hypothetical protein complement(621750..622790) Mycobacterium smegmatis str. MC2 155 4536908 YP_884956.1 CDS MSMEG_0545 NC_008596.1 622986 623513 R LuxR family transcriptional regulator complement(622986..623513) Mycobacterium smegmatis str. MC2 155 4535173 YP_884957.1 CDS MSMEG_0546 NC_008596.1 623786 624613 R hypothetical protein complement(623786..624613) Mycobacterium smegmatis str. MC2 155 4534373 YP_884958.1 CDS MSMEG_0548 NC_008596.1 624722 625600 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 624722..625600 Mycobacterium smegmatis str. MC2 155 4531574 YP_884959.1 CDS MSMEG_0547 NC_008596.1 625597 626658 R identified by similarity to GB:CAD18826.1; ISMsm5, transposase complement(625597..626658) Mycobacterium smegmatis str. MC2 155 4536149 YP_884960.1 CDS MSMEG_0549 NC_008596.1 626702 627430 R identified by match to protein family HMM PF00528; ABC transporter permease complement(626702..627430) Mycobacterium smegmatis str. MC2 155 4533329 YP_884961.1 CDS MSMEG_0550 NC_008596.1 627472 628440 R identified by match to protein family HMM TIGR01728; sulfonate binding protein complement(627472..628440) Mycobacterium smegmatis str. MC2 155 4533861 YP_884962.1 CDS MSMEG_0551 NC_008596.1 628489 629271 R identified by match to protein family HMM PF00005; nitrate/sulfonate/bicarbonate ABC transporter ATPase complement(628489..629271) Mycobacterium smegmatis str. MC2 155 4532252 YP_884963.1 CDS MSMEG_0552 NC_008596.1 629360 629854 D identified by match to protein family HMM PF02566; hypothetical protein 629360..629854 Mycobacterium smegmatis str. MC2 155 4533913 YP_884964.1 CDS MSMEG_0553 NC_008596.1 629922 631274 D identified by match to protein family HMM PF01547; sugar ABC transporter substrate-binding protein 629922..631274 Mycobacterium smegmatis str. MC2 155 4532081 YP_884965.1 CDS MSMEG_0554 NC_008596.1 631271 632140 D identified by match to protein family HMM PF00528; ABC transporter permease 631271..632140 Mycobacterium smegmatis str. MC2 155 4537540 YP_884966.1 CDS MSMEG_0555 NC_008596.1 632137 632928 D identified by match to protein family HMM PF00528; ABC transporter permease 632137..632928 Mycobacterium smegmatis str. MC2 155 4531706 YP_884967.1 CDS MSMEG_0556 NC_008596.1 632925 633980 D identified by match to protein family HMM PF00005; ABC transporter 632925..633980 Mycobacterium smegmatis str. MC2 155 4534826 YP_884968.1 CDS MSMEG_0557 NC_008596.1 634165 634302 D hypothetical protein 634165..634302 Mycobacterium smegmatis str. MC2 155 4531913 YP_884969.1 CDS MSMEG_0558 NC_008596.1 634299 634826 D hypothetical protein 634299..634826 Mycobacterium smegmatis str. MC2 155 4533414 YP_884970.1 CDS MSMEG_0559 NC_008596.1 634899 635102 R identified by match to protein family HMM PF00313; hypothetical protein complement(634899..635102) Mycobacterium smegmatis str. MC2 155 4534189 YP_884971.1 CDS dapB NC_008596.1 635220 636284 R identified by match to protein family HMM PF01113; dihydrodipicolinate reductase N-terminus domain-containing protein complement(635220..636284) Mycobacterium smegmatis str. MC2 155 4537076 YP_884972.1 CDS MSMEG_0561 NC_008596.1 636421 637101 D identified by match to protein family HMM PF00440; match to protein family HMM PF02909; TetR family transcriptional regulator 636421..637101 Mycobacterium smegmatis str. MC2 155 4533968 YP_884973.1 CDS MSMEG_0563 NC_008596.1 637149 637904 D hypothetical protein 637149..637904 Mycobacterium smegmatis str. MC2 155 4535429 YP_884974.1 CDS MSMEG_0562 NC_008596.1 637893 638879 R identified by match to protein family HMM PF05661; hypothetical protein complement(637893..638879) Mycobacterium smegmatis str. MC2 155 4532401 YP_884975.1 CDS MSMEG_0564 NC_008596.1 638914 640326 R identified by match to protein family HMM PF00860; match to protein family HMM PF00916; xanthine/uracil permease complement(638914..640326) Mycobacterium smegmatis str. MC2 155 4536569 YP_884976.1 CDS MSMEG_0565 NC_008596.1 640338 641435 R identified by match to protein family HMM PF00534; glycosyl transferase family protein complement(640338..641435) Mycobacterium smegmatis str. MC2 155 4533865 YP_884977.1 CDS MSMEG_0566 NC_008596.1 641432 642280 R identified by match to protein family HMM PF00795; aliphatic amidase complement(641432..642280) Mycobacterium smegmatis str. MC2 155 4533060 YP_884978.1 CDS MSMEG_0567 NC_008596.1 642290 643711 R identified by match to protein family HMM PF00583; match to protein family HMM PF02769; selenophosphate synthetase complement(642290..643711) Mycobacterium smegmatis str. MC2 155 4532714 YP_884979.1 CDS MSMEG_0568 NC_008596.1 643711 644760 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(643711..644760) Mycobacterium smegmatis str. MC2 155 4531098 YP_884980.1 CDS MSMEG_0569 NC_008596.1 644774 646045 R identified by match to protein family HMM PF07992; potassium transport flavoprotein complement(644774..646045) Mycobacterium smegmatis str. MC2 155 4532452 YP_884981.1 CDS MSMEG_0570 NC_008596.1 646042 646338 R hypothetical protein complement(646042..646338) Mycobacterium smegmatis str. MC2 155 4532006 YP_884982.1 CDS MSMEG_0571 NC_008596.1 646331 647233 R identified by match to protein family HMM PF00795; carbon-nitrogen hydrolase complement(646331..647233) Mycobacterium smegmatis str. MC2 155 4536170 YP_884983.1 CDS MSMEG_0572 NC_008596.1 647243 647764 R hypothetical protein complement(647243..647764) Mycobacterium smegmatis str. MC2 155 4535981 YP_884984.1 CDS MSMEG_0574 NC_008596.1 648080 648733 D identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; ECF sigma factor RpoE1 648080..648733 Mycobacterium smegmatis str. MC2 155 4534521 YP_884985.1 CDS MSMEG_0573 NC_008596.1 648700 649296 R identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; ECF sigma factor RpoE1 complement(648700..649296) Mycobacterium smegmatis str. MC2 155 4531695 YP_884986.1 CDS MSMEG_0575 NC_008596.1 649562 649978 D identified by match to protein family HMM PF05423; MmpS1 protein 649562..649978 Mycobacterium smegmatis str. MC2 155 4533590 YP_884987.1 CDS MSMEG_0576 NC_008596.1 649975 652866 D identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833; MmpL4 protein 649975..652866 Mycobacterium smegmatis str. MC2 155 4534435 YP_884988.1 CDS MSMEG_0577 NC_008596.1 652908 654131 D identified by match to protein family HMM PF07690; major facilitator superfamily protein 652908..654131 Mycobacterium smegmatis str. MC2 155 4531428 YP_884989.1 CDS MSMEG_0578 NC_008596.1 654135 655271 D identified by match to protein family HMM PF02770; acyl-CoA dehydrogenase 654135..655271 Mycobacterium smegmatis str. MC2 155 4534463 YP_884990.1 CDS MSMEG_0580 NC_008596.1 655294 656088 D hypothetical protein 655294..656088 Mycobacterium smegmatis str. MC2 155 4537315 YP_884991.1 CDS MSMEG_0579 NC_008596.1 656078 657565 R identified by match to protein family HMM PF02954; match to protein family HMM PF07905; Fis family transcriptional regulator complement(656078..657565) Mycobacterium smegmatis str. MC2 155 4534132 YP_884992.1 CDS gabT NC_008596.1 657676 659022 D identified by match to protein family HMM PF00202; match to protein family HMM TIGR00700; 4-aminobutyrate aminotransferase 657676..659022 Mycobacterium smegmatis str. MC2 155 4536614 YP_884993.1 CDS MSMEG_0582 NC_008596.1 659025 660479 D identified by match to protein family HMM PF00171; succinate-semialdehyde dehydrogenase 659025..660479 Mycobacterium smegmatis str. MC2 155 4532999 YP_884994.1 CDS MSMEG_0583 NC_008596.1 660492 660752 R hypothetical protein complement(660492..660752) Mycobacterium smegmatis str. MC2 155 4532386 YP_884995.1 CDS MSMEG_0584 NC_008596.1 660999 662471 R hypothetical protein complement(660999..662471) Mycobacterium smegmatis str. MC2 155 4536834 YP_884996.1 CDS MSMEG_0585 NC_008596.1 661011 662237 D identified by match to protein family HMM PF02515; L-carnitine dehydratase/bile acid-inducible protein F 661011..662237 Mycobacterium smegmatis str. MC2 155 4537401 YP_884997.1 CDS MSMEG_0586 NC_008596.1 662508 662897 R identified by match to protein family HMM PF01740; STAS domain-containing protein complement(662508..662897) Mycobacterium smegmatis str. MC2 155 4531556 YP_884998.1 CDS rhaU NC_008596.1 663229 663549 D identified by match to protein family HMM PF05336; L-rhamnose 1-epimerase 663229..663549 Mycobacterium smegmatis str. MC2 155 4531762 YP_884999.1 CDS MSMEG_0588 NC_008596.1 663590 664921 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; rhamnose tranport protein 663590..664921 Mycobacterium smegmatis str. MC2 155 4537721 YP_885000.1 CDS rhaI NC_008596.1 664918 666081 D identified by match to protein family HMM TIGR02635; L-rhamnose isomerase 664918..666081 Mycobacterium smegmatis str. MC2 155 4531985 YP_885001.1 CDS rhaD NC_008596.1 666069 668123 D identified by match to protein family HMM PF00106; match to protein family HMM PF00596; match to protein family HMM TIGR02632; short chain dehydrogenase 666069..668123 Mycobacterium smegmatis str. MC2 155 4535126 YP_885002.1 CDS rhaB NC_008596.1 668184 669641 D identified by match to protein family HMM PF00370; match to protein family HMM PF02782; rhamnulokinase 668184..669641 Mycobacterium smegmatis str. MC2 155 4531074 YP_885003.1 CDS MSMEG_0592 NC_008596.1 669649 670650 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; rhamnose catabolism operon transcriptional regulator 669649..670650 Mycobacterium smegmatis str. MC2 155 4531584 YP_885004.1 CDS MSMEG_0593 NC_008596.1 670737 671384 R identified by match to protein family HMM PF02589; hypothetical protein complement(670737..671384) Mycobacterium smegmatis str. MC2 155 4532518 YP_885005.1 CDS MSMEG_0594 NC_008596.1 671348 672817 R identified by match to protein family HMM TIGR00273; iron-sulfur cluster binding protein complement(671348..672817) Mycobacterium smegmatis str. MC2 155 4537688 YP_885006.1 CDS MSMEG_0595 NC_008596.1 672814 673551 R identified by match to protein family HMM PF02754; glycolate oxidase complement(672814..673551) Mycobacterium smegmatis str. MC2 155 4536035 YP_885007.1 CDS MSMEG_0596 NC_008596.1 673641 674327 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 673641..674327 Mycobacterium smegmatis str. MC2 155 4537090 YP_885008.1 CDS MSMEG_0598 NC_008596.1 674388 674783 D hypothetical protein 674388..674783 Mycobacterium smegmatis str. MC2 155 4536682 YP_885009.1 CDS MSMEG_0597 NC_008596.1 674780 676060 R hypothetical protein complement(674780..676060) Mycobacterium smegmatis str. MC2 155 4533453 YP_885010.1 CDS MSMEG_0599 NC_008596.1 676104 677750 D activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 676104..677750 Mycobacterium smegmatis str. MC2 155 4531275 YP_885011.1 CDS MSMEG_0600 NC_008596.1 677821 678603 D identified by match to protein family HMM PF00106; dehydrogenase 677821..678603 Mycobacterium smegmatis str. MC2 155 4537453 YP_885012.1 CDS MSMEG_0601 NC_008596.1 678620 678928 R hypothetical protein complement(678620..678928) Mycobacterium smegmatis str. MC2 155 4535959 YP_885013.1 CDS MSMEG_0602 NC_008596.1 678969 679124 R hypothetical protein complement(678969..679124) Mycobacterium smegmatis str. MC2 155 4535297 YP_885014.1 CDS MSMEG_0603 NC_008596.1 679378 681582 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase complement(679378..681582) Mycobacterium smegmatis str. MC2 155 4533536 YP_885015.1 CDS MSMEG_0604 NC_008596.1 681693 682661 R identified by match to protein family HMM PF00389; match to protein family HMM PF02826; glyoxylate reductase complement(681693..682661) Mycobacterium smegmatis str. MC2 155 4535024 YP_885016.1 CDS MSMEG_0605 NC_008596.1 682652 683758 R hypothetical protein complement(682652..683758) Mycobacterium smegmatis str. MC2 155 4530921 YP_885017.1 CDS MSMEG_0606 NC_008596.1 683791 684420 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(683791..684420) Mycobacterium smegmatis str. MC2 155 4536115 YP_885018.1 CDS MSMEG_0608 NC_008596.1 684535 685134 D identified by match to protein family HMM PF00903; glyoxalase 684535..685134 Mycobacterium smegmatis str. MC2 155 4534915 YP_885019.1 CDS MSMEG_0607 NC_008596.1 685104 685946 R identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027; methyltransferase, , family protein complement(685104..685946) Mycobacterium smegmatis str. MC2 155 4531088 YP_885020.1 CDS MSMEG_0609 NC_008596.1 685955 686830 R identified by match to protein family HMM PF01381; hypothetical protein complement(685955..686830) Mycobacterium smegmatis str. MC2 155 4537667 YP_885021.1 CDS MSMEG_0610 NC_008596.1 686934 687842 D identified by match to protein family HMM PF00753; beta-lactamase 686934..687842 Mycobacterium smegmatis str. MC2 155 4534691 YP_885022.1 CDS MSMEG_0611 NC_008596.1 687835 689295 D identified by match to protein family HMM PF00135; para-nitrobenzyl esterase 687835..689295 Mycobacterium smegmatis str. MC2 155 4537011 YP_885023.1 CDS MSMEG_0612 NC_008596.1 689301 689912 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(689301..689912) Mycobacterium smegmatis str. MC2 155 4537045 YP_885024.1 CDS MSMEG_0613 NC_008596.1 689985 690890 D hypothetical protein 689985..690890 Mycobacterium smegmatis str. MC2 155 4536600 YP_885025.1 CDS MSMEG_0614 NC_008596.1 690921 691814 D identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027; methyltransferase 690921..691814 Mycobacterium smegmatis str. MC2 155 4531128 YP_885026.1 CDS MSMEG_0615 NC_008596.1 691998 693767 D identified by match to protein family HMM PF00004; ATPase AAA 691998..693767 Mycobacterium smegmatis str. MC2 155 4535974 YP_885027.1 CDS MSMEG_0616 NC_008596.1 693764 695320 D identified by match to protein family HMM PF05108; hypothetical protein 693764..695320 Mycobacterium smegmatis str. MC2 155 4531181 YP_885028.1 CDS MSMEG_0617 NC_008596.1 695317 699294 D identified by match to protein family HMM PF01580; ftsk/SpoIIIE family protein 695317..699294 Mycobacterium smegmatis str. MC2 155 4537422 YP_885029.1 CDS MSMEG_0618 NC_008596.1 699291 699602 D identified by match to protein family HMM PF00934; PE family protein 699291..699602 Mycobacterium smegmatis str. MC2 155 4531916 YP_885030.1 CDS MSMEG_0619 NC_008596.1 699604 701175 D identified by match to protein family HMM PF00823; PPE family protein 699604..701175 Mycobacterium smegmatis str. MC2 155 4534257 YP_885031.1 CDS MSMEG_0620 NC_008596.1 701225 701518 D PE family protein 701225..701518 Mycobacterium smegmatis str. MC2 155 4534464 YP_885032.1 CDS MSMEG_0621 NC_008596.1 701553 701840 D low molecular weight protein antigen 7 701553..701840 Mycobacterium smegmatis str. MC2 155 4532995 YP_885033.1 CDS MSMEG_0622 NC_008596.1 701853 702734 D DNA-binding protein 701853..702734 Mycobacterium smegmatis str. MC2 155 4531925 YP_885034.1 CDS snm NC_008596.1 702737 704164 D identified by match to protein family HMM PF04600; match to protein family HMM TIGR02958; secretion protein Snm4 702737..704164 Mycobacterium smegmatis str. MC2 155 4536194 YP_885035.1 CDS MSMEG_0624 NC_008596.1 704172 705551 D identified by match to protein family HMM PF00082; subtilase 704172..705551 Mycobacterium smegmatis str. MC2 155 4535326 YP_885036.1 CDS MSMEG_0626 NC_008596.1 705548 706477 D hypothetical protein 705548..706477 Mycobacterium smegmatis str. MC2 155 4536438 YP_885037.1 CDS MSMEG_0625 NC_008596.1 706433 707632 R hypothetical protein complement(706433..707632) Mycobacterium smegmatis str. MC2 155 4533486 YP_885038.1 CDS MSMEG_0627 NC_008596.1 707650 709398 R identified by match to protein family HMM PF02366; glycosyl transferase family protein complement(707650..709398) Mycobacterium smegmatis str. MC2 155 4532558 YP_885039.1 CDS MSMEG_0628 NC_008596.1 709441 710328 R identified by match to protein family HMM PF04909; amidohydrolase complement(709441..710328) Mycobacterium smegmatis str. MC2 155 4532575 YP_885040.1 CDS MSMEG_0629 NC_008596.1 710373 711137 D catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate; trans-aconitate 2-methyltransferase 710373..711137 Mycobacterium smegmatis str. MC2 155 4532284 YP_885041.1 CDS MSMEG_0630 NC_008596.1 711186 711989 R hypothetical protein complement(711186..711989) Mycobacterium smegmatis str. MC2 155 4536599 YP_885042.1 CDS MSMEG_0632 NC_008596.1 713531 714025 R hypothetical protein complement(713531..714025) Mycobacterium smegmatis str. MC2 155 4536232 YP_885043.1 CDS MSMEG_0634 NC_008596.1 714093 714764 D identified by match to protein family HMM PF01569; PAP2 superfamily protein 714093..714764 Mycobacterium smegmatis str. MC2 155 4533226 YP_885044.1 CDS MSMEG_0633 NC_008596.1 714718 716181 R identified by match to protein family HMM PF00781; match to protein family HMM PF01569; PAP2 superfamily protein complement(714718..716181) Mycobacterium smegmatis str. MC2 155 4533327 YP_885045.1 CDS MSMEG_0635 NC_008596.1 716288 716914 D hypothetical protein 716288..716914 Mycobacterium smegmatis str. MC2 155 4533302 YP_885046.1 CDS MSMEG_0636 NC_008596.1 716920 717405 R hypothetical protein complement(716920..717405) Mycobacterium smegmatis str. MC2 155 4531082 YP_885047.1 CDS MSMEG_0637 NC_008596.1 717434 719002 R identified by match to protein family HMM PF00355; match to protein family HMM PF01266; iron-sulfur binding oxidoreductase complement(717434..719002) Mycobacterium smegmatis str. MC2 155 4532154 YP_885048.1 CDS MSMEG_0638 NC_008596.1 719172 721103 D hypothetical protein 719172..721103 Mycobacterium smegmatis str. MC2 155 4532827 YP_885049.1 CDS MSMEG_0639 NC_008596.1 721104 722114 R identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; oligopeptide transport ATP-binding protein AppF complement(721104..722114) Mycobacterium smegmatis str. MC2 155 4535451 YP_885050.1 CDS MSMEG_0640 NC_008596.1 722111 723097 R identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; oligopeptide transport ATP-binding protein OppD complement(722111..723097) Mycobacterium smegmatis str. MC2 155 4531211 YP_885051.1 CDS MSMEG_0641 NC_008596.1 723094 724056 R identified by match to protein family HMM PF00528; binding-protein-dependent transporters inner membrane component complement(723094..724056) Mycobacterium smegmatis str. MC2 155 4532194 YP_885052.1 CDS MSMEG_0642 NC_008596.1 724060 725070 R identified by match to protein family HMM PF00528; ABC transporter permease complement(724060..725070) Mycobacterium smegmatis str. MC2 155 4531093 YP_885053.1 CDS MSMEG_0643 NC_008596.1 725067 726722 R identified by match to protein family HMM PF00496; extracellular solute-binding protein complement(725067..726722) Mycobacterium smegmatis str. MC2 155 4534918 YP_885054.1 CDS MSMEG_0644 NC_008596.1 726931 727503 D identified by match to protein family HMM PF07883; cupin 726931..727503 Mycobacterium smegmatis str. MC2 155 4533013 YP_885055.1 CDS MSMEG_0645 NC_008596.1 727629 728471 D identified by match to protein family HMM PF00722; beta-1,3-glucanase 727629..728471 Mycobacterium smegmatis str. MC2 155 4535764 YP_885056.1 CDS MSMEG_0646 NC_008596.1 728572 730170 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097; transporter complement(728572..730170) Mycobacterium smegmatis str. MC2 155 4532128 YP_885057.1 CDS MSMEG_0648 NC_008596.1 730087 730212 D hypothetical protein 730087..730212 Mycobacterium smegmatis str. MC2 155 4532894 YP_885058.1 CDS phnC NC_008596.1 730167 730958 R identified by match to protein family HMM PF00005; match to protein family HMM TIGR02315; phosphonate ABC transporter ATP-binding protein complement(730167..730958) Mycobacterium smegmatis str. MC2 155 4530938 YP_885059.1 CDS MSMEG_0649 NC_008596.1 730969 731934 R identified by match to protein family HMM TIGR01098; phosphonate-binding periplasmic protein complement(730969..731934) Mycobacterium smegmatis str. MC2 155 4536326 YP_885060.1 CDS MSMEG_0650 NC_008596.1 732117 732869 D identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 732117..732869 Mycobacterium smegmatis str. MC2 155 4536777 YP_885061.1 CDS MSMEG_0651 NC_008596.1 732984 733664 D hypothetical protein 732984..733664 Mycobacterium smegmatis str. MC2 155 4536724 YP_885062.1 CDS MSMEG_0652 NC_008596.1 733710 734573 D hypothetical protein 733710..734573 Mycobacterium smegmatis str. MC2 155 4530880 YP_885063.1 CDS MSMEG_0654 NC_008596.1 735585 736520 R identified by match to protein family HMM PF00296; hypothetical protein complement(735585..736520) Mycobacterium smegmatis str. MC2 155 4537517 YP_885064.1 CDS MSMEG_0655 NC_008596.1 736636 737415 D identified by match to protein family HMM PF00106; glucose 1-dehydrogenase 736636..737415 Mycobacterium smegmatis str. MC2 155 4536125 YP_885065.1 CDS MSMEG_0656 NC_008596.1 737416 738018 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(737416..738018) Mycobacterium smegmatis str. MC2 155 4535941 YP_885066.1 CDS MSMEG_0657 NC_008596.1 738064 739248 R identified by match to protein family HMM PF00355; Rieske (2Fe-2S) domain-containing protein complement(738064..739248) Mycobacterium smegmatis str. MC2 155 4536971 YP_885067.1 CDS MSMEG_0658 NC_008596.1 739263 740168 R identified by match to protein family HMM PF00528; polyamine ABC-transporter inner membrane subunit complement(739263..740168) Mycobacterium smegmatis str. MC2 155 4534646 YP_885068.1 CDS MSMEG_0659 NC_008596.1 740165 741106 R identified by match to protein family HMM PF00528; polyamine ABC transporter permease complement(740165..741106) Mycobacterium smegmatis str. MC2 155 4534119 YP_885069.1 CDS MSMEG_0660 NC_008596.1 741111 742385 R identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409; extracellular solute-binding protein complement(741111..742385) Mycobacterium smegmatis str. MC2 155 4533697 YP_885070.1 CDS MSMEG_0661 NC_008596.1 742519 743907 D identified by match to protein family HMM PF00202; glutamate-1-semialdehyde 2,1-aminomutase 742519..743907 Mycobacterium smegmatis str. MC2 155 4533101 YP_885071.1 CDS MSMEG_0662 NC_008596.1 743924 745081 D identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM TIGR01187; putrescine transport ATP-binding protein PotG 743924..745081 Mycobacterium smegmatis str. MC2 155 4536429 YP_885072.1 CDS MSMEG_0663 NC_008596.1 745088 745795 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(745088..745795) Mycobacterium smegmatis str. MC2 155 4534736 YP_885073.1 CDS MSMEG_0664 NC_008596.1 745913 747574 D identified by match to protein family HMM PF01266; FAD dependent oxidoreductase 745913..747574 Mycobacterium smegmatis str. MC2 155 4534093 YP_885074.1 CDS MSMEG_0666 NC_008596.1 747619 749646 D identified by match to protein family HMM PF02629; acetyl-CoA synthetase 747619..749646 Mycobacterium smegmatis str. MC2 155 4536219 YP_885075.1 CDS MSMEG_0665 NC_008596.1 749627 750838 R identified by match to protein family HMM PF01266; sarcosine oxidase subunit beta complement(749627..750838) Mycobacterium smegmatis str. MC2 155 4532818 YP_885076.1 CDS MSMEG_0667 NC_008596.1 750914 752092 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; butyryl-CoA dehydrogenase 750914..752092 Mycobacterium smegmatis str. MC2 155 4532610 YP_885077.1 CDS MSMEG_0668 NC_008596.1 752138 752347 D integral membrane protein 752138..752347 Mycobacterium smegmatis str. MC2 155 4533403 YP_885078.1 CDS MSMEG_0670 NC_008596.1 752392 753333 D identified by match to protein family HMM PF03486; match to protein family HMM PF07992; FAD dependent oxidoreductase 752392..753333 Mycobacterium smegmatis str. MC2 155 4531838 YP_885079.1 CDS MSMEG_0669 NC_008596.1 753330 753836 R hypothetical protein complement(753330..753836) Mycobacterium smegmatis str. MC2 155 4536962 YP_885080.1 CDS MSMEG_0671 NC_008596.1 753920 755068 R identified by match to protein family HMM PF00107; S-(hydroxymethyl)glutathione dehydrogenase complement(753920..755068) Mycobacterium smegmatis str. MC2 155 4533379 YP_885081.1 CDS MSMEG_0672 NC_008596.1 755161 755814 R hypothetical protein complement(755161..755814) Mycobacterium smegmatis str. MC2 155 4533858 YP_885082.1 CDS MSMEG_0673 NC_008596.1 755982 756524 R hypothetical protein complement(755982..756524) Mycobacterium smegmatis str. MC2 155 4533817 YP_885083.1 CDS MSMEG_0674 NC_008596.1 756845 757855 R identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein complement(756845..757855) Mycobacterium smegmatis str. MC2 155 4533443 YP_885084.1 CDS MSMEG_0675 NC_008596.1 758055 759272 R identified by match to protein family HMM PF00067; cytochrome P450 complement(758055..759272) Mycobacterium smegmatis str. MC2 155 4537492 YP_885085.1 CDS MSMEG_0676 NC_008596.1 759460 759996 D identified by match to protein family HMM PF00440; transcriptional regulatory protein 759460..759996 Mycobacterium smegmatis str. MC2 155 4536610 YP_885086.1 CDS dcd NC_008596.1 760192 760761 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 760192..760761 Mycobacterium smegmatis str. MC2 155 4535809 YP_885087.1 CDS MSMEG_0679 NC_008596.1 761054 762742 D hypothetical protein 761054..762742 Mycobacterium smegmatis str. MC2 155 4532440 YP_885088.1 CDS MSMEG_0680 NC_008596.1 762836 764170 D identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; UDP-glucose 6-dehydrogenase 762836..764170 Mycobacterium smegmatis str. MC2 155 4531603 YP_885089.1 CDS MSMEG_0681 NC_008596.1 764248 765516 D identified by match to protein family HMM PF00067; P450 heme-thiolate protein 764248..765516 Mycobacterium smegmatis str. MC2 155 4535356 YP_885090.1 CDS MSMEG_0682 NC_008596.1 765518 766270 D identified by match to protein family HMM PF07398; match to protein family HMM TIGR03083; hypothetical protein 765518..766270 Mycobacterium smegmatis str. MC2 155 4536747 YP_885091.1 CDS MSMEG_0683 NC_008596.1 766289 766657 D hypothetical protein 766289..766657 Mycobacterium smegmatis str. MC2 155 4534246 YP_885092.1 CDS MSMEG_0684 NC_008596.1 766670 768784 R identified by match to protein family HMM PF01315; match to protein family HMM PF02738; aldehyde oxidase complement(766670..768784) Mycobacterium smegmatis str. MC2 155 4535153 YP_885093.1 CDS MSMEG_0685 NC_008596.1 768781 769776 R identified by match to protein family HMM PF00941; match to protein family HMM PF03450; oxidoreductase, molybdopterin-binding subunit complement(768781..769776) Mycobacterium smegmatis str. MC2 155 4532674 YP_885094.1 CDS MSMEG_0686 NC_008596.1 769773 770294 R identified by match to protein family HMM PF00111; match to protein family HMM PF01799; oxidoreductase complement(769773..770294) Mycobacterium smegmatis str. MC2 155 4531551 YP_885095.1 CDS MSMEG_0687 NC_008596.1 770334 771569 R identified by match to protein family HMM PF07907; hypothetical protein complement(770334..771569) Mycobacterium smegmatis str. MC2 155 4537746 YP_885096.1 CDS MSMEG_0688 NC_008596.1 771588 772862 R broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase complement(771588..772862) Mycobacterium smegmatis str. MC2 155 4534978 YP_885097.1 CDS MSMEG_0689 NC_008596.1 773110 773346 D hypothetical protein 773110..773346 Mycobacterium smegmatis str. MC2 155 4533273 YP_885098.1 CDS MSMEG_0690 NC_008596.1 773427 776555 R identified by match to protein family HMM PF00037; match to protein family HMM PF02754; (Fe-S)-binding protein complement(773427..776555) Mycobacterium smegmatis str. MC2 155 4536518 YP_885099.1 CDS MSMEG_0691 NC_008596.1 776854 779364 R identified by match to protein family HMM PF00196; transcriptional regulatory protein complement(776854..779364) Mycobacterium smegmatis str. MC2 155 4532097 YP_885100.1 CDS MSMEG_0692 NC_008596.1 779379 781166 R hypothetical protein complement(779379..781166) Mycobacterium smegmatis str. MC2 155 4533955 YP_885101.1 CDS MSMEG_0693 NC_008596.1 781358 781909 D hypothetical protein 781358..781909 Mycobacterium smegmatis str. MC2 155 4533976 YP_885102.1 CDS MSMEG_0695 NC_008596.1 783439 785247 D isoniazid inductible protein IniA 783439..785247 Mycobacterium smegmatis str. MC2 155 4536942 YP_885103.1 CDS MSMEG_0696 NC_008596.1 785252 785593 R hypothetical protein complement(785252..785593) Mycobacterium smegmatis str. MC2 155 4535648 YP_885104.1 CDS MSMEG_0697 NC_008596.1 785583 785996 R identified by match to protein family HMM PF07332; integral membrane protein complement(785583..785996) Mycobacterium smegmatis str. MC2 155 4533514 YP_885105.1 CDS MSMEG_0698 NC_008596.1 786166 787659 D isoniazid inductible protein IniC 786166..787659 Mycobacterium smegmatis str. MC2 155 4532716 YP_885106.1 CDS MSMEG_0699 NC_008596.1 787715 789565 D hypothetical protein 787715..789565 Mycobacterium smegmatis str. MC2 155 4534864 YP_885107.1 CDS MSMEG_0700 NC_008596.1 789578 790090 R hypothetical protein complement(789578..790090) Mycobacterium smegmatis str. MC2 155 4535264 YP_885108.1 CDS MSMEG_0701 NC_008596.1 790135 790428 D hypothetical protein 790135..790428 Mycobacterium smegmatis str. MC2 155 4537402 YP_885109.1 CDS MSMEG_0702 NC_008596.1 790621 791553 R identified by match to protein family HMM PF00296; monooxygenase complement(790621..791553) Mycobacterium smegmatis str. MC2 155 4535971 YP_885110.1 CDS MSMEG_0703 NC_008596.1 791573 792196 R identified by match to protein family HMM TIGR03083; match to protein family HMM TIGR03085; hypothetical protein complement(791573..792196) Mycobacterium smegmatis str. MC2 155 4531908 YP_885111.1 CDS MSMEG_0704 NC_008596.1 792264 792803 R LpqJ protein complement(792264..792803) Mycobacterium smegmatis str. MC2 155 4535281 YP_885112.1 CDS MSMEG_0705 NC_008596.1 792856 794181 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; permease of the major facilitator superfamily protein complement(792856..794181) Mycobacterium smegmatis str. MC2 155 4533012 YP_885113.1 CDS MSMEG_0706 NC_008596.1 794200 794811 R identified by match to protein family HMM PF03737; 4-carboxy-4-hydroxy-2-oxoadipate aldolase complement(794200..794811) Mycobacterium smegmatis str. MC2 155 4531131 YP_885114.1 CDS MSMEG_0707 NC_008596.1 794808 795467 R identified by similarity to GB:CAD18384.1; match to protein family HMM PF03737; hypothetical protein complement(794808..795467) Mycobacterium smegmatis str. MC2 155 4536341 YP_885115.1 CDS MSMEG_0708 NC_008596.1 795587 796540 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 795587..796540 Mycobacterium smegmatis str. MC2 155 4536462 YP_885116.1 CDS dnaK NC_008596.1 796766 798634 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 796766..798634 Mycobacterium smegmatis str. MC2 155 4532040 YP_885117.1 CDS grpE NC_008596.1 798631 799281 D identified by match to protein family HMM PF01025; co-chaperone GrpE 798631..799281 Mycobacterium smegmatis str. MC2 155 4535347 YP_885118.1 CDS dnaJ NC_008596.1 799323 800495 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ 799323..800495 Mycobacterium smegmatis str. MC2 155 4534931 YP_885119.1 CDS MSMEG_0713 NC_008596.1 800492 800851 D identified by match to protein family HMM PF00376; MerR family transcriptional regulator 800492..800851 Mycobacterium smegmatis str. MC2 155 4535613 YP_885120.1 CDS MSMEG_0712 NC_008596.1 800848 801438 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(800848..801438) Mycobacterium smegmatis str. MC2 155 4533055 YP_885121.1 CDS MSMEG_0714 NC_008596.1 801516 802700 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(801516..802700) Mycobacterium smegmatis str. MC2 155 4535933 YP_885122.1 CDS MSMEG_0715 NC_008596.1 802729 803472 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; 3-oxoacyl-ACP reductase complement(802729..803472) Mycobacterium smegmatis str. MC2 155 4537718 YP_885123.1 CDS MSMEG_0716 NC_008596.1 803662 804960 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator superfamily protein 803662..804960 Mycobacterium smegmatis str. MC2 155 4535076 YP_885124.1 CDS MSMEG_0718 NC_008596.1 804960 806609 D identified by match to protein family HMM PF00501; acetyl-CoA synthetase 804960..806609 Mycobacterium smegmatis str. MC2 155 4534254 YP_885125.1 CDS MSMEG_0717 NC_008596.1 806596 807498 R identified by match to protein family HMM PF01263; aldose 1-epimerase complement(806596..807498) Mycobacterium smegmatis str. MC2 155 4531752 YP_885126.1 CDS MSMEG_0719 NC_008596.1 807543 808682 R identified by match to protein family HMM PF00042; match to protein family HMM PF00175; match to protein family HMM PF00970; flavohemoprotein complement(807543..808682) Mycobacterium smegmatis str. MC2 155 4537164 YP_885127.1 CDS MSMEG_0720 NC_008596.1 808724 809722 R integral membrane protein complement(808724..809722) Mycobacterium smegmatis str. MC2 155 4536207 YP_885128.1 CDS MSMEG_0722 NC_008596.1 810514 811017 R hypothetical protein complement(810514..811017) Mycobacterium smegmatis str. MC2 155 4534073 YP_885129.1 CDS MSMEG_0723 NC_008596.1 811187 811729 R hypothetical protein complement(811187..811729) Mycobacterium smegmatis str. MC2 155 4535091 YP_885130.1 CDS MSMEG_0724 NC_008596.1 811835 812161 D similar at the nucleotide level to IS1137 in the IS Finder database.; identified by match to protein family HMM PF01527; IS1137, transposase orfA 811835..812161 Mycobacterium smegmatis str. MC2 155 4533100 YP_885131.1 CDS MSMEG_0725 NC_008596.1 812164 813117 D similar at the nucleotide level to IS1137 in the IS Finder database.; identified by match to protein family HMM PF00665; IS1137, transposase orfB 812164..813117 Mycobacterium smegmatis str. MC2 155 4535465 YP_885132.1 CDS MSMEG_0726 NC_008596.1 813145 813267 R hypothetical protein complement(813145..813267) Mycobacterium smegmatis str. MC2 155 4537496 YP_885133.1 CDS MSMEG_0727 NC_008596.1 813749 814006 R hypothetical protein complement(813749..814006) Mycobacterium smegmatis str. MC2 155 4532535 YP_885134.1 CDS MSMEG_0728 NC_008596.1 814372 814680 R hypothetical protein complement(814372..814680) Mycobacterium smegmatis str. MC2 155 4536406 YP_885135.1 CDS MSMEG_0729 NC_008596.1 814904 815572 R hypothetical protein complement(814904..815572) Mycobacterium smegmatis str. MC2 155 4531938 YP_885136.1 CDS MSMEG_0730 NC_008596.1 815642 816844 R identified by match to protein family HMM PF00201; match to protein family HMM TIGR01426; oleandomycin glycosyltransferase complement(815642..816844) Mycobacterium smegmatis str. MC2 155 4537056 YP_885137.1 CDS MSMEG_0731 NC_008596.1 816851 817474 R hypothetical protein complement(816851..817474) Mycobacterium smegmatis str. MC2 155 4535960 YP_885138.1 CDS MSMEG_0732 NC_008596.1 817638 820184 D identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; chaperone ClpB 817638..820184 Mycobacterium smegmatis str. MC2 155 4531654 YP_885139.1 CDS dapB NC_008596.1 820263 821342 R identified by match to protein family HMM PF01113; dihydrodipicolinate reductase N-terminus domain-containing protein complement(820263..821342) Mycobacterium smegmatis str. MC2 155 4533233 YP_885140.1 CDS MSMEG_0734 NC_008596.1 821339 822418 R identified by match to protein family HMM PF00355; Rieske (2Fe-2S) domain-containing protein complement(821339..822418) Mycobacterium smegmatis str. MC2 155 4531350 YP_885141.1 CDS MSMEG_0735 NC_008596.1 822502 823164 D identified by match to protein family HMM PF00440; transcriptional regulator 822502..823164 Mycobacterium smegmatis str. MC2 155 4533085 YP_885142.1 CDS MSMEG_0736 NC_008596.1 823231 824067 D hypothetical protein 823231..824067 Mycobacterium smegmatis str. MC2 155 4532545 YP_885143.1 CDS MSMEG_0737 NC_008596.1 824113 824889 D identified by match to protein family HMM PF00106; dehydrogenase 824113..824889 Mycobacterium smegmatis str. MC2 155 4536474 YP_885144.1 CDS MSMEG_0738 NC_008596.1 824920 825822 D hypothetical protein 824920..825822 Mycobacterium smegmatis str. MC2 155 4530915 YP_885145.1 CDS MSMEG_0739 NC_008596.1 825815 826459 D identified by match to protein family HMM PF00588; spou rRNA methylase 825815..826459 Mycobacterium smegmatis str. MC2 155 4535229 YP_885146.1 CDS MSMEG_0740 NC_008596.1 826475 827656 D identified by match to protein family HMM PF03663; glycosyl hydrolase 826475..827656 Mycobacterium smegmatis str. MC2 155 4537225 YP_885147.1 CDS MSMEG_0741 NC_008596.1 827660 828568 D hypothetical protein 827660..828568 Mycobacterium smegmatis str. MC2 155 4534809 YP_885148.1 CDS MSMEG_0742 NC_008596.1 828573 829526 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulatory protein complement(828573..829526) Mycobacterium smegmatis str. MC2 155 4531212 YP_885149.1 CDS MSMEG_0743 NC_008596.1 829538 830698 D identified by match to protein family HMM PF02625; xanthine dehydrogenase 829538..830698 Mycobacterium smegmatis str. MC2 155 4536612 YP_885150.1 CDS MSMEG_0744 NC_008596.1 830754 831644 D identified by match to protein family HMM PF00941; match to protein family HMM PF03450; carbon monoxide dehydrogenase 830754..831644 Mycobacterium smegmatis str. MC2 155 4535171 YP_885151.1 CDS MSMEG_0745 NC_008596.1 831647 832123 D identified by match to protein family HMM PF00111; match to protein family HMM PF01799; 2Fe-2S-binding domain-containing protein 831647..832123 Mycobacterium smegmatis str. MC2 155 4536060 YP_885152.1 CDS MSMEG_0746 NC_008596.1 832120 834519 D identified by match to protein family HMM PF01315; match to protein family HMM PF02738; match to protein family HMM TIGR02416; carbon-monoxide dehydrogenase, large subunit 832120..834519 Mycobacterium smegmatis str. MC2 155 4532076 YP_885153.1 CDS MSMEG_0747 NC_008596.1 834538 835275 D identified by match to protein family HMM PF02625; carbon monoxide dehydrogenase F protein 834538..835275 Mycobacterium smegmatis str. MC2 155 4533227 YP_885154.1 CDS MSMEG_0748 NC_008596.1 835259 836161 D identified by match to protein family HMM PF00004; match to protein family HMM PF07726; match to protein family HMM PF07728; ATPase 835259..836161 Mycobacterium smegmatis str. MC2 155 4535608 YP_885155.1 CDS MSMEG_0749 NC_008596.1 836174 836869 D identified by match to protein family HMM PF06240; carbon monoxide dehydrogenase subunit G (CoxG) family protein 836174..836869 Mycobacterium smegmatis str. MC2 155 4536737 YP_885156.1 CDS MSMEG_0751 NC_008596.1 836866 838059 D identified by match to protein family HMM PF05762; hypothetical protein 836866..838059 Mycobacterium smegmatis str. MC2 155 4537055 YP_885157.1 CDS MSMEG_0750 NC_008596.1 838056 838778 R membrane protein complement(838056..838778) Mycobacterium smegmatis str. MC2 155 4531545 YP_885158.1 CDS fbaA NC_008596.1 838859 839896 D catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 838859..839896 Mycobacterium smegmatis str. MC2 155 4530899 YP_885159.1 CDS MSMEG_0753 NC_008596.1 839930 840730 R hypothetical protein complement(839930..840730) Mycobacterium smegmatis str. MC2 155 4530994 YP_885160.1 CDS MSMEG_0754 NC_008596.1 840804 841211 D hypothetical protein 840804..841211 Mycobacterium smegmatis str. MC2 155 4537654 YP_885161.1 CDS MSMEG_0755 NC_008596.1 841222 842115 R identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cobalt-zinc-cadmium resistance protein complement(841222..842115) Mycobacterium smegmatis str. MC2 155 4533938 YP_885162.1 CDS MSMEG_0757 NC_008596.1 842208 842702 D hypothetical protein 842208..842702 Mycobacterium smegmatis str. MC2 155 4531231 YP_885163.1 CDS MSMEG_0756 NC_008596.1 842699 843478 R identified by match to protein family HMM PF02163; peptidase, M50B family protein complement(842699..843478) Mycobacterium smegmatis str. MC2 155 4534222 YP_885164.1 CDS MSMEG_0758 NC_008596.1 843524 844063 R hypothetical protein complement(843524..844063) Mycobacterium smegmatis str. MC2 155 4533869 YP_885165.1 CDS purA NC_008596.1 844214 845509 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 844214..845509 Mycobacterium smegmatis str. MC2 155 4532353 YP_885166.1 CDS MSMEG_0760 NC_008596.1 845509 846159 D identified by match to protein family HMM PF03061; thioesterase 845509..846159 Mycobacterium smegmatis str. MC2 155 4531921 YP_885167.1 CDS MSMEG_0761 NC_008596.1 846166 846360 R hypothetical protein complement(846166..846360) Mycobacterium smegmatis str. MC2 155 4535942 YP_885168.1 CDS MSMEG_0762 NC_008596.1 846366 847571 R identified by match to protein family HMM PF00067; cytochrome P450 complement(846366..847571) Mycobacterium smegmatis str. MC2 155 4536512 YP_885169.1 CDS MSMEG_0763 NC_008596.1 847627 849621 R identified by match to protein family HMM PF03176; antibiotic transporter complement(847627..849621) Mycobacterium smegmatis str. MC2 155 4531362 YP_885170.1 CDS MSMEG_0764 NC_008596.1 849626 851209 R identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831; Na+/H+ antiporter complement(849626..851209) Mycobacterium smegmatis str. MC2 155 4531273 YP_885171.1 CDS MSMEG_0765 NC_008596.1 851254 851556 D hypothetical protein 851254..851556 Mycobacterium smegmatis str. MC2 155 4533631 YP_885172.1 CDS purT NC_008596.1 851580 852980 D identified by match to protein family HMM PF02222; phosphoribosylglycinamide formyltransferase 2 851580..852980 Mycobacterium smegmatis str. MC2 155 4532947 YP_885173.1 CDS MSMEG_0767 NC_008596.1 852984 853469 D hypothetical protein 852984..853469 Mycobacterium smegmatis str. MC2 155 4535457 YP_885174.1 CDS MSMEG_0768 NC_008596.1 853466 853876 D hypothetical protein 853466..853876 Mycobacterium smegmatis str. MC2 155 4532022 YP_885175.1 CDS metZ NC_008596.1 853886 855103 D identified by match to protein family HMM PF01053; match to protein family HMM TIGR01325; O-succinylhomoserine sulfhydrylase 853886..855103 Mycobacterium smegmatis str. MC2 155 4536647 YP_885176.1 CDS MSMEG_0770 NC_008596.1 855107 855514 D hypothetical protein 855107..855514 Mycobacterium smegmatis str. MC2 155 4535817 YP_885177.1 CDS MSMEG_0771 NC_008596.1 855584 856444 R identified by match to protein family HMM PF00106; short chain dehydrogenase complement(855584..856444) Mycobacterium smegmatis str. MC2 155 4536755 YP_885178.1 CDS MSMEG_0772 NC_008596.1 856524 857672 R phytase complement(856524..857672) Mycobacterium smegmatis str. MC2 155 4534955 YP_885179.1 CDS MSMEG_0773 NC_008596.1 857779 858309 D identified by match to protein family HMM PF00583; acetyltransferase 857779..858309 Mycobacterium smegmatis str. MC2 155 4530971 YP_885180.1 CDS MSMEG_0776 NC_008596.1 859468 859779 D hypothetical protein 859468..859779 Mycobacterium smegmatis str. MC2 155 4533095 YP_885181.1 CDS MSMEG_0775 NC_008596.1 859776 860522 R identified by match to protein family HMM PF00753; metallo-beta-lactamase superfamily protein complement(859776..860522) Mycobacterium smegmatis str. MC2 155 4534129 YP_885182.1 CDS MSMEG_0777 NC_008596.1 860554 861567 D identified by match to protein family HMM PF00296; F420-dependent glucose-6-phosphate dehydrogenase 860554..861567 Mycobacterium smegmatis str. MC2 155 4534037 YP_885183.1 CDS MSMEG_0778 NC_008596.1 861746 862510 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; transcriptional regulator complement(861746..862510) Mycobacterium smegmatis str. MC2 155 4535574 YP_885184.1 CDS MSMEG_0779 NC_008596.1 862519 863295 R identified by match to protein family HMM PF00106; match to protein family HMM PF01073; short chain dehydrogenase complement(862519..863295) Mycobacterium smegmatis str. MC2 155 4534081 YP_885185.1 CDS MSMEG_0780 NC_008596.1 863307 864413 R identified by match to protein family HMM PF01636; phosphotransferase enzyme family protein complement(863307..864413) Mycobacterium smegmatis str. MC2 155 4532870 YP_885186.1 CDS MSMEG_0781 NC_008596.1 864599 866176 D identified by match to protein family HMM PF00324; amino acid permease 864599..866176 Mycobacterium smegmatis str. MC2 155 4534735 YP_885187.1 CDS MSMEG_0782 NC_008596.1 866234 867556 D identified by match to protein family HMM PF00202; class III aminotransferase 866234..867556 Mycobacterium smegmatis str. MC2 155 4535062 YP_885188.1 CDS pta NC_008596.1 867578 869656 D catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 867578..869656 Mycobacterium smegmatis str. MC2 155 4533640 YP_885189.1 CDS ackA NC_008596.1 869653 870783 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 869653..870783 Mycobacterium smegmatis str. MC2 155 4531693 YP_885190.1 CDS MSMEG_0785 NC_008596.1 870902 871771 R hypothetical protein complement(870902..871771) Mycobacterium smegmatis str. MC2 155 4534557 YP_885191.1 CDS MSMEG_0786 NC_008596.1 872016 874298 R identified by match to protein family HMM PF00069; serine/threonine protein kinase complement(872016..874298) Mycobacterium smegmatis str. MC2 155 4537074 YP_885192.1 CDS MSMEG_0787 NC_008596.1 874298 875266 R identified by match to protein family HMM PF00497; extracellular solute-binding protein complement(874298..875266) Mycobacterium smegmatis str. MC2 155 4535108 YP_885193.1 CDS MSMEG_0788 NC_008596.1 875362 876675 R hypothetical protein complement(875362..876675) Mycobacterium smegmatis str. MC2 155 4534309 YP_885194.1 CDS MSMEG_0790 NC_008596.1 876862 877341 D identified by match to protein family HMM PF00293; NUDIX family hydrolase 876862..877341 Mycobacterium smegmatis str. MC2 155 4532029 YP_885195.1 CDS thiE NC_008596.1 877325 878008 R Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase complement(877325..878008) Mycobacterium smegmatis str. MC2 155 4533425 YP_885196.1 CDS thiO NC_008596.1 878147 879151 D identified by match to protein family HMM PF01266; match to protein family HMM TIGR02352; glycine oxidase ThiO 878147..879151 Mycobacterium smegmatis str. MC2 155 4530829 YP_885197.1 CDS thiS NC_008596.1 879148 879348 D with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; sulfur carrier protein ThiS 879148..879348 Mycobacterium smegmatis str. MC2 155 4532434 YP_885198.1 CDS thiG NC_008596.1 879341 880099 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 879341..880099 Mycobacterium smegmatis str. MC2 155 4532639 YP_885199.1 CDS MSMEG_0794 NC_008596.1 880120 880869 D hypothetical protein 880120..880869 Mycobacterium smegmatis str. MC2 155 4531490 YP_885200.1 CDS MSMEG_0795 NC_008596.1 880883 881794 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 880883..881794 Mycobacterium smegmatis str. MC2 155 4533719 YP_885201.1 CDS MSMEG_0796 NC_008596.1 881791 882549 D ABC transporter 881791..882549 Mycobacterium smegmatis str. MC2 155 4531356 YP_885202.1 CDS MSMEG_0798 NC_008596.1 885068 885736 D hypothetical protein 885068..885736 Mycobacterium smegmatis str. MC2 155 4534273 YP_885203.1 CDS MSMEG_0799 NC_008596.1 885893 886069 D hypothetical protein 885893..886069 Mycobacterium smegmatis str. MC2 155 4531424 YP_885204.1 CDS MSMEG_0800 NC_008596.1 886332 886511 D hypothetical protein 886332..886511 Mycobacterium smegmatis str. MC2 155 4534846 YP_885205.1 CDS MSMEG_0801 NC_008596.1 886821 887522 D identified by similarity to GP:150004; match to protein family HMM PF07929; IS1096, tnpR protein 886821..887522 Mycobacterium smegmatis str. MC2 155 4536824 YP_885206.1 CDS MSMEG_0802 NC_008596.1 887530 888852 R identified by similarity to GP:150005; match to protein family HMM PF01610; IS1096, tnpA protein complement(887530..888852) Mycobacterium smegmatis str. MC2 155 4536729 YP_885207.1 CDS MSMEG_0803 NC_008596.1 888571 889056 D hypothetical protein 888571..889056 Mycobacterium smegmatis str. MC2 155 4533951 YP_885208.1 CDS MSMEG_0804 NC_008596.1 889186 889623 R hypothetical protein complement(889186..889623) Mycobacterium smegmatis str. MC2 155 4537114 YP_885209.1 CDS MSMEG_0805 NC_008596.1 889631 890662 D hypothetical protein 889631..890662 Mycobacterium smegmatis str. MC2 155 4536196 YP_885210.1 CDS MSMEG_0806 NC_008596.1 890643 892154 D identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389; hydrolase 890643..892154 Mycobacterium smegmatis str. MC2 155 4535044 YP_885211.1 CDS MSMEG_0807 NC_008596.1 892151 893602 D identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389; leupeptin-inactivating enzyme 1 892151..893602 Mycobacterium smegmatis str. MC2 155 4534693 YP_885212.1 CDS MSMEG_0808 NC_008596.1 893674 894762 D identified by match to protein family HMM PF00195; match to protein family HMM PF02797; chalcone synthase Pks10 893674..894762 Mycobacterium smegmatis str. MC2 155 4536038 YP_885213.1 CDS MSMEG_0809 NC_008596.1 894762 895265 D identified by match to protein family HMM PF04140; isoprenylcysteine carboxyl methyltransferase 894762..895265 Mycobacterium smegmatis str. MC2 155 4531405 YP_885214.1 CDS MSMEG_0811 NC_008596.1 895262 896290 D identified by match to protein family HMM PF01266; match to protein family HMM PF01494; oxidoreductase 895262..896290 Mycobacterium smegmatis str. MC2 155 4531802 YP_885215.1 CDS MSMEG_0810 NC_008596.1 896271 897566 R identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; pyrimidine permease RutG complement(896271..897566) Mycobacterium smegmatis str. MC2 155 4537527 YP_885216.1 CDS MSMEG_0812 NC_008596.1 897612 898832 R identified by match to protein family HMM PF00324; match to protein family HMM PF01490; amino acid transporter complement(897612..898832) Mycobacterium smegmatis str. MC2 155 4535471 YP_885217.1 CDS MSMEG_0813 NC_008596.1 898848 899174 R hypothetical protein complement(898848..899174) Mycobacterium smegmatis str. MC2 155 4531943 YP_885218.1 CDS MSMEG_0815 NC_008596.1 899192 900652 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 899192..900652 Mycobacterium smegmatis str. MC2 155 4535732 YP_885219.1 CDS MSMEG_0814 NC_008596.1 900619 900891 R membrane protein complement(900619..900891) Mycobacterium smegmatis str. MC2 155 4534670 YP_885220.1 CDS MSMEG_0816 NC_008596.1 900908 902392 R identified by match to protein family HMM PF01266; match to protein family HMM PF07992; flavin-binding monooxygenase complement(900908..902392) Mycobacterium smegmatis str. MC2 155 4532201 YP_885221.1 CDS MSMEG_0817 NC_008596.1 902464 903387 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 902464..903387 Mycobacterium smegmatis str. MC2 155 4537416 YP_885222.1 CDS MSMEG_0818 NC_008596.1 903499 904851 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; transporter major facilitator family protein 903499..904851 Mycobacterium smegmatis str. MC2 155 4533071 YP_885223.1 CDS MSMEG_0819 NC_008596.1 904883 906142 D identified by match to protein family HMM PF01546; match to protein family HMM TIGR01879; N-carbamoyl-L-amino acid amidohydrolase 904883..906142 Mycobacterium smegmatis str. MC2 155 4536150 YP_885224.1 CDS MSMEG_0821 NC_008596.1 906142 907605 D identified by match to protein family HMM PF01425; glutamyl-tRNA(Gln) amidotransferase subunit A 906142..907605 Mycobacterium smegmatis str. MC2 155 4533044 YP_885225.1 CDS MSMEG_0820 NC_008596.1 907599 907868 R hypothetical protein complement(907599..907868) Mycobacterium smegmatis str. MC2 155 4534836 YP_885226.1 CDS MSMEG_0822 NC_008596.1 907874 909241 R identified by match to protein family HMM PF00067; cytochrome P450 complement(907874..909241) Mycobacterium smegmatis str. MC2 155 4536704 YP_885227.1 CDS MSMEG_0823 NC_008596.1 909288 909842 R hypothetical protein complement(909288..909842) Mycobacterium smegmatis str. MC2 155 4531197 YP_885228.1 CDS MSMEG_0824 NC_008596.1 909845 910492 R hypothetical protein complement(909845..910492) Mycobacterium smegmatis str. MC2 155 4533950 YP_885229.1 CDS thiD NC_008596.1 910482 911318 R catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase complement(910482..911318) Mycobacterium smegmatis str. MC2 155 4530828 YP_885230.1 CDS thiC NC_008596.1 911327 912901 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(911327..912901) Mycobacterium smegmatis str. MC2 155 4536005 YP_885231.1 CDS MSMEG_0827 NC_008596.1 913283 915019 D identified by match to protein family HMM PF07690; major facilitator superfamily protein 913283..915019 Mycobacterium smegmatis str. MC2 155 4535130 YP_885232.1 CDS MSMEG_0828 NC_008596.1 915135 916205 R immunogenic protein MPT63 complement(915135..916205) Mycobacterium smegmatis str. MC2 155 4537086 YP_885233.1 CDS xth NC_008596.1 916410 917192 R identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III complement(916410..917192) Mycobacterium smegmatis str. MC2 155 4536714 YP_885234.1 CDS MSMEG_0831 NC_008596.1 917379 918095 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase 917379..918095 Mycobacterium smegmatis str. MC2 155 4533921 YP_885235.1 CDS MSMEG_0830 NC_008596.1 918079 919005 R identified by match to protein family HMM PF00583; acetyltransferase, gnat family protein complement(918079..919005) Mycobacterium smegmatis str. MC2 155 4535768 YP_885236.1 CDS def NC_008596.1 919024 919617 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(919024..919617) Mycobacterium smegmatis str. MC2 155 4534679 YP_885237.1 CDS MSMEG_0833 NC_008596.1 919745 920056 D hypothetical protein 919745..920056 Mycobacterium smegmatis str. MC2 155 4531106 YP_885238.1 CDS MSMEG_0834 NC_008596.1 920096 920572 D tuberculin-like protein 920096..920572 Mycobacterium smegmatis str. MC2 155 4533581 YP_885239.1 CDS sodC NC_008596.1 920583 921293 D identified by similarity to PDB:1IB5_A.0; match to protein family HMM PF00080; copper/zinc superoxide dismutase 920583..921293 Mycobacterium smegmatis str. MC2 155 4531002 YP_885240.1 CDS MSMEG_0836 NC_008596.1 921274 922404 D ATP-dependent carboxylate-amine ligase; carboxylate-amine ligase 921274..922404 Mycobacterium smegmatis str. MC2 155 4536446 YP_885241.1 CDS MSMEG_0837 NC_008596.1 922415 922870 D hypothetical protein 922415..922870 Mycobacterium smegmatis str. MC2 155 4535119 YP_885242.1 CDS MSMEG_0838 NC_008596.1 922879 923928 R identified by match to protein family HMM PF01037; AsnC family transcriptional regulator complement(922879..923928) Mycobacterium smegmatis str. MC2 155 4534878 YP_885243.1 CDS MSMEG_0839 NC_008596.1 924025 924651 D identified by match to protein family HMM PF02190; ATP-dependent protease La 924025..924651 Mycobacterium smegmatis str. MC2 155 4534551 YP_885244.1 CDS MSMEG_0840 NC_008596.1 924856 925509 R hypothetical protein complement(924856..925509) Mycobacterium smegmatis str. MC2 155 4531445 YP_885245.1 CDS MSMEG_0842 NC_008596.1 926980 927264 R hypothetical protein complement(926980..927264) Mycobacterium smegmatis str. MC2 155 4536233 YP_885246.1 CDS MSMEG_0843 NC_008596.1 927500 927853 R subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit G complement(927500..927853) Mycobacterium smegmatis str. MC2 155 4532371 YP_885247.1 CDS MSMEG_0844 NC_008596.1 927850 928140 R subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit F complement(927850..928140) Mycobacterium smegmatis str. MC2 155 4531213 YP_885248.1 CDS MSMEG_0845 NC_008596.1 928137 928676 R subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit E complement(928137..928676) Mycobacterium smegmatis str. MC2 155 4534442 YP_885249.1 CDS MSMEG_0846 NC_008596.1 928673 930268 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; monovalent cation/H+ antiporter subunit D complement(928673..930268) Mycobacterium smegmatis str. MC2 155 4532738 YP_885250.1 CDS MSMEG_0847 NC_008596.1 930265 930732 R subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit C complement(930265..930732) Mycobacterium smegmatis str. MC2 155 4531914 YP_885251.2 CDS MSMEG_0848 NC_008596.1 930732 933611 R subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit A complement(930732..933611) Mycobacterium smegmatis str. MC2 155 4536387 YP_885252.1 CDS MSMEG_0849 NC_008596.1 933768 934085 D oxygenase 933768..934085 Mycobacterium smegmatis str. MC2 155 4536386 YP_885253.1 CDS MSMEG_0850 NC_008596.1 934162 935004 D hypothetical protein 934162..935004 Mycobacterium smegmatis str. MC2 155 4531668 YP_885254.1 CDS MSMEG_0851 NC_008596.1 935059 936345 R identified by match to protein family HMM PF02040; match to protein family HMM PF03600; citrate transporter complement(935059..936345) Mycobacterium smegmatis str. MC2 155 4531015 YP_885255.1 CDS MSMEG_0852 NC_008596.1 936364 936822 R identified by match to protein family HMM PF00571; hypothetical protein complement(936364..936822) Mycobacterium smegmatis str. MC2 155 4532060 YP_885256.1 CDS MSMEG_0853 NC_008596.1 936855 937103 R hypothetical protein complement(936855..937103) Mycobacterium smegmatis str. MC2 155 4535025 YP_885257.1 CDS MSMEG_0854 NC_008596.1 937236 938204 D identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730; two-component system sensor kinase 937236..938204 Mycobacterium smegmatis str. MC2 155 4535813 YP_885258.1 CDS MSMEG_0856 NC_008596.1 938204 938851 D identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family transcriptional regulator 938204..938851 Mycobacterium smegmatis str. MC2 155 4537285 YP_885259.1 CDS MSMEG_0855 NC_008596.1 938818 939270 R identified by match to protein family HMM PF08044; hypothetical protein complement(938818..939270) Mycobacterium smegmatis str. MC2 155 4535564 YP_885260.1 CDS MSMEG_0857 NC_008596.1 939331 939645 R hypothetical protein complement(939331..939645) Mycobacterium smegmatis str. MC2 155 4531822 YP_885261.1 CDS MSMEG_0859 NC_008596.1 939739 940752 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 939739..940752 Mycobacterium smegmatis str. MC2 155 4531371 YP_885262.1 CDS MSMEG_0858 NC_008596.1 940749 942986 R identified by match to protein family HMM PF00004; match to protein family HMM PF02359; cell division control protein Cdc48 complement(940749..942986) Mycobacterium smegmatis str. MC2 155 4534483 YP_885263.1 CDS MSMEG_0860 NC_008596.1 942988 943848 R identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473; CDP-diacylglycerol--serine O-phosphatidyltransferase complement(942988..943848) Mycobacterium smegmatis str. MC2 155 4533626 YP_885264.1 CDS psd NC_008596.1 943845 944543 R catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase complement(943845..944543) Mycobacterium smegmatis str. MC2 155 4531023 YP_885265.1 CDS MSMEG_0862 NC_008596.1 944579 945775 R identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis protein MoeA complement(944579..945775) Mycobacterium smegmatis str. MC2 155 4535029 YP_885266.1 CDS MSMEG_0863 NC_008596.1 945772 946695 R identified by match to protein family HMM PF00106; short chain dehydrogenase complement(945772..946695) Mycobacterium smegmatis str. MC2 155 4535052 YP_885267.1 CDS MSMEG_0864 NC_008596.1 946733 947272 D identified by match to protein family HMM PF03703; membrane flanked domain-containing protein 946733..947272 Mycobacterium smegmatis str. MC2 155 4530870 YP_885268.1 CDS MSMEG_0865 NC_008596.1 947269 948768 D identified by match to protein family HMM PF03703; membrane flanked domain-containing protein 947269..948768 Mycobacterium smegmatis str. MC2 155 4536383 YP_885269.1 CDS MSMEG_0867 NC_008596.1 948794 949609 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460; hydrolase 948794..949609 Mycobacterium smegmatis str. MC2 155 4534986 YP_885270.1 CDS MSMEG_0866 NC_008596.1 949606 951312 R identified by match to protein family HMM PF04851; DNA or RNA helicase of superfamily protein II complement(949606..951312) Mycobacterium smegmatis str. MC2 155 4535322 YP_885271.1 CDS MSMEG_0868 NC_008596.1 951585 955409 R hypothetical protein complement(951585..955409) Mycobacterium smegmatis str. MC2 155 4532725 YP_885272.1 CDS MSMEG_0869 NC_008596.1 955503 955901 D hypothetical protein 955503..955901 Mycobacterium smegmatis str. MC2 155 4535970 YP_885273.1 CDS MSMEG_0870 NC_008596.1 956321 958486 R identified by match to protein family HMM PF01315; match to protein family HMM PF02738; oxidoreductase complement(956321..958486) Mycobacterium smegmatis str. MC2 155 4531719 YP_885274.1 CDS MSMEG_0871 NC_008596.1 958483 959457 R identified by match to protein family HMM PF00941; aldehyde or xanthine dehydrogenase, molybdopterin binding subunit protein complement(958483..959457) Mycobacterium smegmatis str. MC2 155 4532272 YP_885275.1 CDS MSMEG_0872 NC_008596.1 959461 960078 R identified by match to protein family HMM PF00111; match to protein family HMM PF01799; twin-arginine translocation pathway signal complement(959461..960078) Mycobacterium smegmatis str. MC2 155 4534921 YP_885276.1 CDS MSMEG_0873 NC_008596.1 960209 960379 R hypothetical protein complement(960209..960379) Mycobacterium smegmatis str. MC2 155 4532365 YP_885277.1 CDS MSMEG_0874 NC_008596.1 960615 961319 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 960615..961319 Mycobacterium smegmatis str. MC2 155 4535714 YP_885278.1 CDS MSMEG_0875 NC_008596.1 961391 962794 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; sialic acid transporter 961391..962794 Mycobacterium smegmatis str. MC2 155 4532282 YP_885279.1 CDS MSMEG_0877 NC_008596.1 962791 963723 D identified by match to protein family HMM PF00701; dihydrodipicolinate synthase 962791..963723 Mycobacterium smegmatis str. MC2 155 4536572 YP_885280.1 CDS MSMEG_0876 NC_008596.1 963720 964637 R identified by match to protein family HMM PF00106; short chain dehydrogenase complement(963720..964637) Mycobacterium smegmatis str. MC2 155 4536421 YP_885281.1 CDS MSMEG_0878 NC_008596.1 964736 965305 D identified by match to protein family HMM PF00440; transcriptional regulator 964736..965305 Mycobacterium smegmatis str. MC2 155 4536104 YP_885282.1 CDS MSMEG_0879 NC_008596.1 965380 965526 R hypothetical protein complement(965380..965526) Mycobacterium smegmatis str. MC2 155 4535925 YP_885283.1 CDS groEL NC_008596.1 965533 967158 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 965533..967158 Mycobacterium smegmatis str. MC2 155 4533338 YP_885284.1 CDS MSMEG_0881 NC_008596.1 967303 968136 D hypothetical protein 967303..968136 Mycobacterium smegmatis str. MC2 155 4533229 YP_885285.1 CDS MSMEG_0882 NC_008596.1 968200 968583 R hypothetical protein complement(968200..968583) Mycobacterium smegmatis str. MC2 155 4536442 YP_885286.1 CDS MSMEG_0883 NC_008596.1 968609 970351 R identified by match to protein family HMM PF07908; match to protein family HMM PF07969; amidohydrolase complement(968609..970351) Mycobacterium smegmatis str. MC2 155 4531328 YP_885287.1 CDS MSMEG_0884 NC_008596.1 970433 970813 D identified by match to protein family HMM PF00903; glyoxalase 970433..970813 Mycobacterium smegmatis str. MC2 155 4537077 YP_885288.1 CDS MSMEG_0885 NC_008596.1 970817 971320 R hypothetical protein complement(970817..971320) Mycobacterium smegmatis str. MC2 155 4532745 YP_885289.1 CDS MSMEG_0886 NC_008596.1 971320 972810 R identified by match to protein family HMM PF00069; serine/threonine protein kinase complement(971320..972810) Mycobacterium smegmatis str. MC2 155 4537135 YP_885290.1 CDS MSMEG_0887 NC_008596.1 972865 973422 D hypothetical protein 972865..973422 Mycobacterium smegmatis str. MC2 155 4534919 YP_885291.1 CDS MSMEG_0888 NC_008596.1 973419 973982 D hypothetical protein 973419..973982 Mycobacterium smegmatis str. MC2 155 4537480 YP_885292.1 CDS MSMEG_0889 NC_008596.1 973997 975526 D identified by match to protein family HMM PF00171; succinate-semialdehyde dehydrogenase 973997..975526 Mycobacterium smegmatis str. MC2 155 4535169 YP_885293.1 CDS MSMEG_0890 NC_008596.1 975595 976194 D identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; HD domain-containing protein 975595..976194 Mycobacterium smegmatis str. MC2 155 4532069 YP_885294.1 CDS MSMEG_0891 NC_008596.1 976256 977107 D identified by match to protein family HMM PF03976; polyphosphate kinase 976256..977107 Mycobacterium smegmatis str. MC2 155 4535776 YP_885295.1 CDS MSMEG_0892 NC_008596.1 977160 978005 D hypothetical protein 977160..978005 Mycobacterium smegmatis str. MC2 155 4537612 YP_885296.1 CDS MSMEG_0893 NC_008596.1 978024 978347 R hypothetical protein complement(978024..978347) Mycobacterium smegmatis str. MC2 155 4536949 YP_885297.1 CDS MSMEG_0894 NC_008596.1 978540 979904 D identified by match to protein family HMM PF01408; match to protein family HMM PF03447; dihydrodipicolinate reductase 978540..979904 Mycobacterium smegmatis str. MC2 155 4533784 YP_885298.1 CDS MSMEG_0895 NC_008596.1 980004 980747 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 980004..980747 Mycobacterium smegmatis str. MC2 155 4531165 YP_885299.1 CDS MSMEG_0896 NC_008596.1 980820 982190 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; integral membrane transporter 980820..982190 Mycobacterium smegmatis str. MC2 155 4537300 YP_885300.1 CDS MSMEG_0897 NC_008596.1 982187 983464 D hypothetical protein 982187..983464 Mycobacterium smegmatis str. MC2 155 4535607 YP_885301.1 CDS MSMEG_0898 NC_008596.1 983461 984273 D identified by match to protein family HMM PF01116; tagatose-1,6-bisphosphate aldolase GatY 983461..984273 Mycobacterium smegmatis str. MC2 155 4534841 YP_885302.1 CDS MSMEG_0899 NC_008596.1 984361 986376 R identified by match to protein family HMM PF00326; match to protein family HMM PF02897; prolyl oligopeptidase complement(984361..986376) Mycobacterium smegmatis str. MC2 155 4536524 YP_885303.1 CDS MSMEG_0900 NC_008596.1 986441 987964 D identified by match to protein family HMM PF00171; eptc-inducible aldehyde dehydrogenase 986441..987964 Mycobacterium smegmatis str. MC2 155 4536768 YP_885304.1 CDS MSMEG_0901 NC_008596.1 987998 988474 D identified by match to protein family HMM PF05610; hypothetical protein 987998..988474 Mycobacterium smegmatis str. MC2 155 4534262 YP_885305.1 CDS MSMEG_0902 NC_008596.1 988475 989344 R identified by match to protein family HMM PF02353; cyclopropane-fatty-acyl-phospholipid synthase complement(988475..989344) Mycobacterium smegmatis str. MC2 155 4532816 YP_885306.1 CDS lpdA NC_008596.1 989521 990915 D E3 component of alpha keto acid dehydrogenase complexes LpdC; forms a homodimer; binds one molecule of FAD monomer; catalyzes NAD+-dependent oxidation of dihydrolipoyl cofactors that are covalently linked to the E2 component; dihydrolipoamide dehydrogenase 989521..990915 Mycobacterium smegmatis str. MC2 155 4536874 YP_885307.1 CDS MSMEG_0904 NC_008596.1 990912 991181 D hypothetical protein 990912..991181 Mycobacterium smegmatis str. MC2 155 4537000 YP_885308.1 CDS pcaC NC_008596.1 991188 991748 R identified by match to protein family HMM PF02627; hypothetical protein complement(991188..991748) Mycobacterium smegmatis str. MC2 155 4532489 YP_885309.1 CDS MSMEG_0906 NC_008596.1 991776 993212 R identified by match to protein family HMM PF01381; match to protein family HMM PF06114; DNA-binding protein complement(991776..993212) Mycobacterium smegmatis str. MC2 155 4533576 YP_885310.1 CDS MSMEG_0907 NC_008596.1 993284 993628 D hypothetical protein 993284..993628 Mycobacterium smegmatis str. MC2 155 4537731 YP_885311.1 CDS MSMEG_0908 NC_008596.1 993604 994002 D hypothetical protein 993604..994002 Mycobacterium smegmatis str. MC2 155 4535849 YP_885312.1 CDS MSMEG_0909 NC_008596.1 994104 994952 D identified by match to protein family HMM PF01643; acyl-ACP thioesterase 994104..994952 Mycobacterium smegmatis str. MC2 155 4534767 YP_885313.1 CDS MSMEG_0910 NC_008596.1 995033 995167 R hypothetical protein complement(995033..995167) Mycobacterium smegmatis str. MC2 155 4532652 YP_885314.1 CDS aceA NC_008596.1 995201 996487 D identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346; isocitrate lyase 995201..996487 Mycobacterium smegmatis str. MC2 155 4536848 YP_885315.1 CDS MSMEG_0912 NC_008596.1 996618 997478 D converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 996618..997478 Mycobacterium smegmatis str. MC2 155 4531107 YP_885316.1 CDS MSMEG_0913 NC_008596.1 997643 998515 D identified by match to protein family HMM PF02353; methoxy mycolic acid synthase 1 997643..998515 Mycobacterium smegmatis str. MC2 155 4532216 YP_885317.1 CDS MSMEG_0914 NC_008596.1 998555 999427 R hypothetical protein complement(998555..999427) Mycobacterium smegmatis str. MC2 155 4535483 YP_885318.1 CDS MSMEG_0915 NC_008596.1 999537 1000424 R identified by match to protein family HMM PF03976; polyphosphate kinase complement(999537..1000424) Mycobacterium smegmatis str. MC2 155 4536956 YP_885319.1 CDS MSMEG_0916 NC_008596.1 1000429 1001133 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(1000429..1001133) Mycobacterium smegmatis str. MC2 155 4531289 YP_885320.1 CDS MSMEG_0917 NC_008596.1 1001253 1002569 D identified by match to protein family HMM PF04286; hypothetical protein 1001253..1002569 Mycobacterium smegmatis str. MC2 155 4530946 YP_885321.1 CDS MSMEG_0918 NC_008596.1 1002657 1003085 D identified by match to protein family HMM PF01381; XRE family transcriptional regulator 1002657..1003085 Mycobacterium smegmatis str. MC2 155 4535529 YP_885322.1 CDS MSMEG_0919 NC_008596.1 1003169 1003867 D heparin-binding hemagglutinin 1003169..1003867 Mycobacterium smegmatis str. MC2 155 4537286 YP_885323.1 CDS MSMEG_0920 NC_008596.1 1003944 1004228 D hypothetical protein 1003944..1004228 Mycobacterium smegmatis str. MC2 155 4532091 YP_885324.1 CDS MSMEG_0921 NC_008596.1 1004242 1004646 D hypothetical protein 1004242..1004646 Mycobacterium smegmatis str. MC2 155 4534644 YP_885325.1 CDS deoC NC_008596.1 1004646 1005329 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 1004646..1005329 Mycobacterium smegmatis str. MC2 155 4534429 YP_885326.1 CDS MSMEG_0923 NC_008596.1 1005367 1006302 R hypothetical protein complement(1005367..1006302) Mycobacterium smegmatis str. MC2 155 4535561 YP_885327.1 CDS MSMEG_0924 NC_008596.1 1006363 1007163 R identified by match to protein family HMM PF00795; carbon-nitrogen hydrolase complement(1006363..1007163) Mycobacterium smegmatis str. MC2 155 4534795 YP_885328.1 CDS MSMEG_0925 NC_008596.1 1007170 1007946 R hypothetical protein complement(1007170..1007946) Mycobacterium smegmatis str. MC2 155 4534422 YP_885329.1 CDS MSMEG_0926 NC_008596.1 1007951 1008442 R hypothetical protein complement(1007951..1008442) Mycobacterium smegmatis str. MC2 155 4536142 YP_885330.1 CDS MSMEG_0927 NC_008596.1 1008489 1008995 R hypothetical protein complement(1008489..1008995) Mycobacterium smegmatis str. MC2 155 4534777 YP_885331.1 CDS murB NC_008596.1 1009022 1010113 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 1009022..1010113 Mycobacterium smegmatis str. MC2 155 4531160 YP_885332.1 CDS MSMEG_0929 NC_008596.1 1010120 1011478 D identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 1010120..1011478 Mycobacterium smegmatis str. MC2 155 4533052 YP_885333.1 CDS MSMEG_0930 NC_008596.1 1011488 1012237 R identified by match to protein family HMM PF00106; serine 3-dehydrogenase complement(1011488..1012237) Mycobacterium smegmatis str. MC2 155 4536649 YP_885334.1 CDS MSMEG_0931 NC_008596.1 1012270 1012557 R hypothetical protein complement(1012270..1012557) Mycobacterium smegmatis str. MC2 155 4536776 YP_885335.1 CDS MSMEG_0932 NC_008596.1 1012561 1013760 D identified by match to protein family HMM PF00480; ROK family protein 1012561..1013760 Mycobacterium smegmatis str. MC2 155 4535889 YP_885336.1 CDS MSMEG_0933 NC_008596.1 1013771 1015075 D identified by match to protein family HMM PF00534; hypothetical protein 1013771..1015075 Mycobacterium smegmatis str. MC2 155 4537367 YP_885337.1 CDS MSMEG_0934 NC_008596.1 1015072 1015569 D hypothetical protein 1015072..1015569 Mycobacterium smegmatis str. MC2 155 4531531 YP_885338.1 CDS MSMEG_0935 NC_008596.1 1015609 1016352 D identified by match to protein family HMM PF00300; match to protein family HMM TIGR01258; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1015609..1016352 Mycobacterium smegmatis str. MC2 155 4537124 YP_885339.1 CDS senX3 NC_008596.1 1016604 1017758 D identified by similarity to SP:P23545; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase SenX3 1016604..1017758 Mycobacterium smegmatis str. MC2 155 4536256 YP_885340.1 CDS regX3 NC_008596.1 1017764 1018441 D identified by similarity to SP:Q50447; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator RegX3 1017764..1018441 Mycobacterium smegmatis str. MC2 155 4532546 YP_885341.1 CDS MSMEG_0938 NC_008596.1 1018465 1019265 R hypothetical protein complement(1018465..1019265) Mycobacterium smegmatis str. MC2 155 4536671 YP_885342.1 CDS MSMEG_0939 NC_008596.1 1019379 1020338 D identified by match to protein family HMM PF02541; Ppx/GppA phosphatase 1019379..1020338 Mycobacterium smegmatis str. MC2 155 4533094 YP_885343.1 CDS MSMEG_0940 NC_008596.1 1020368 1021438 D hypothetical protein 1020368..1021438 Mycobacterium smegmatis str. MC2 155 4537172 YP_885344.1 CDS MSMEG_0941 NC_008596.1 1021461 1022306 D identified by match to protein family HMM PF01261; AP endonuclease, family protein 2 1021461..1022306 Mycobacterium smegmatis str. MC2 155 4532329 YP_885345.1 CDS MSMEG_0942 NC_008596.1 1022339 1023154 D hypothetical protein 1022339..1023154 Mycobacterium smegmatis str. MC2 155 4532464 YP_885346.1 CDS proC NC_008596.1 1023180 1024040 D catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 1023180..1024040 Mycobacterium smegmatis str. MC2 155 4531470 YP_885347.1 CDS MSMEG_0944 NC_008596.1 1024188 1024406 D identified by match to protein family HMM TIGR01764; DNA binding domain-containing protein 1024188..1024406 Mycobacterium smegmatis str. MC2 155 4533369 YP_885348.1 CDS MSMEG_0945 NC_008596.1 1024591 1024692 D identified by match to protein family HMM PF08213; hypothetical protein 1024591..1024692 Mycobacterium smegmatis str. MC2 155 4534765 YP_885349.1 CDS MSMEG_0946 NC_008596.1 1024821 1025849 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; NAD dependent epimerase/dehydratase 1024821..1025849 Mycobacterium smegmatis str. MC2 155 4534052 YP_885350.1 CDS MSMEG_0947 NC_008596.1 1025886 1026950 D identified by match to protein family HMM PF01553; acyltransferase 1025886..1026950 Mycobacterium smegmatis str. MC2 155 4537330 YP_885351.1 CDS MSMEG_0948 NC_008596.1 1026981 1027514 R hypothetical protein complement(1026981..1027514) Mycobacterium smegmatis str. MC2 155 4534235 YP_885352.1 CDS MSMEG_0949 NC_008596.1 1027603 1028493 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; HAD-superfamily hydrolase complement(1027603..1028493) Mycobacterium smegmatis str. MC2 155 4532677 YP_885353.1 CDS MSMEG_0950 NC_008596.1 1028516 1028839 R hypothetical protein complement(1028516..1028839) Mycobacterium smegmatis str. MC2 155 4534576 YP_885354.1 CDS MSMEG_0951 NC_008596.1 1028600 1028842 D identified by match to protein family HMM PF05768; glutaredoxin 1028600..1028842 Mycobacterium smegmatis str. MC2 155 4532596 YP_885355.1 CDS hemA NC_008596.1 1029002 1030357 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 1029002..1030357 Mycobacterium smegmatis str. MC2 155 4534078 YP_885356.1 CDS hemC NC_008596.1 1030361 1031317 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 1030361..1031317 Mycobacterium smegmatis str. MC2 155 4534102 YP_885357.1 CDS hemD NC_008596.1 1031413 1033245 D identified by match to protein family HMM PF00590; match to protein family HMM PF02602; uroporphyrinogen-III synthase 1031413..1033245 Mycobacterium smegmatis str. MC2 155 4534605 YP_885358.1 CDS hemB NC_008596.1 1033330 1034310 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1033330..1034310 Mycobacterium smegmatis str. MC2 155 4537323 YP_885359.1 CDS MSMEG_0955 NC_008596.1 1034274 1034771 R hypothetical protein complement(1034274..1034771) Mycobacterium smegmatis str. MC2 155 4533527 YP_885360.1 CDS MSMEG_0957 NC_008596.1 1034307 1034738 D hypothetical protein 1034307..1034738 Mycobacterium smegmatis str. MC2 155 4537557 YP_885361.1 CDS MSMEG_0958 NC_008596.1 1034759 1035154 D hypothetical protein 1034759..1035154 Mycobacterium smegmatis str. MC2 155 4534814 YP_885362.1 CDS MSMEG_0959 NC_008596.1 1035189 1035683 D transmembrane protein 1035189..1035683 Mycobacterium smegmatis str. MC2 155 4532490 YP_885363.1 CDS MSMEG_0960 NC_008596.1 1035680 1035910 D transmembrane protein 1035680..1035910 Mycobacterium smegmatis str. MC2 155 4537275 YP_885364.1 CDS MSMEG_0962 NC_008596.1 1036854 1037447 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1036854..1037447 Mycobacterium smegmatis str. MC2 155 4533063 YP_885365.1 CDS MSMEG_0963 NC_008596.1 1037522 1037764 D hypothetical protein 1037522..1037764 Mycobacterium smegmatis str. MC2 155 4535430 YP_885366.1 CDS MSMEG_0964 NC_008596.1 1037801 1038283 D identified by match to protein family HMM PF01243; pyridoxamine 5'-phosphate oxidase 1037801..1038283 Mycobacterium smegmatis str. MC2 155 4535841 YP_885367.1 CDS MSMEG_0965 NC_008596.1 1038908 1039543 D porin 1038908..1039543 Mycobacterium smegmatis str. MC2 155 4533718 YP_885368.1 CDS MSMEG_0966 NC_008596.1 1039684 1040067 R identified by match to protein family HMM TIGR00026; hypothetical protein complement(1039684..1040067) Mycobacterium smegmatis str. MC2 155 4534469 YP_885369.1 CDS MSMEG_0967 NC_008596.1 1040090 1040470 R identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026; hypothetical protein complement(1040090..1040470) Mycobacterium smegmatis str. MC2 155 4535664 YP_885370.1 CDS MSMEG_0968 NC_008596.1 1040556 1042010 D identified by match to protein family HMM PF00067; cytochrome P450 1040556..1042010 Mycobacterium smegmatis str. MC2 155 4536604 YP_885371.1 CDS hemL NC_008596.1 1042040 1043395 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 1042040..1043395 Mycobacterium smegmatis str. MC2 155 4536923 YP_885372.1 CDS MSMEG_0970 NC_008596.1 1043446 1044054 D identified by match to protein family HMM PF00300; phosphoglycerate mutase 1043446..1044054 Mycobacterium smegmatis str. MC2 155 4536086 YP_885373.1 CDS MSMEG_0971 NC_008596.1 1044054 1044707 D hypothetical protein 1044054..1044707 Mycobacterium smegmatis str. MC2 155 4532116 YP_885374.1 CDS MSMEG_0972 NC_008596.1 1044704 1045489 D identified by match to protein family HMM PF02683; cytochrome C biogenesis protein transmembrane region 1044704..1045489 Mycobacterium smegmatis str. MC2 155 4536360 YP_885375.1 CDS MSMEG_0973 NC_008596.1 1045489 1047138 D identified by match to protein family HMM PF05140; hypothetical protein 1045489..1047138 Mycobacterium smegmatis str. MC2 155 4533406 YP_885376.1 CDS ccsB NC_008596.1 1047135 1048130 D identified by match to protein family HMM PF01578; match to protein family HMM TIGR03144; cytochrome C biogenesis protein CcsB 1047135..1048130 Mycobacterium smegmatis str. MC2 155 4535323 YP_885377.1 CDS MSMEG_0975 NC_008596.1 1048209 1049537 D hypothetical protein 1048209..1049537 Mycobacterium smegmatis str. MC2 155 4532026 YP_885378.1 CDS MSMEG_0976 NC_008596.1 1049555 1049719 R hypothetical protein complement(1049555..1049719) Mycobacterium smegmatis str. MC2 155 4534386 YP_885379.1 CDS MSMEG_0977 NC_008596.1 1049796 1050068 D hypothetical protein 1049796..1050068 Mycobacterium smegmatis str. MC2 155 4531072 YP_885380.1 CDS MSMEG_0978 NC_008596.1 1050065 1051105 D identified by match to protein family HMM PF00266; class V aminotransferase 1050065..1051105 Mycobacterium smegmatis str. MC2 155 4534024 YP_885381.1 CDS MSMEG_0979 NC_008596.1 1051203 1051451 D keratin associated protein 1051203..1051451 Mycobacterium smegmatis str. MC2 155 4536903 YP_885382.1 CDS MSMEG_0980 NC_008596.1 1051528 1053159 R identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730; signal transduction histidine kinase complement(1051528..1053159) Mycobacterium smegmatis str. MC2 155 4537627 YP_885383.1 CDS MSMEG_0981 NC_008596.1 1053329 1053688 D identified by match to protein family HMM PF00072; two-component system regulator 1053329..1053688 Mycobacterium smegmatis str. MC2 155 4534799 YP_885384.1 CDS MSMEG_0982 NC_008596.1 1053805 1054854 D identified by match to protein family HMM TIGR02122; immunogenic protein 1053805..1054854 Mycobacterium smegmatis str. MC2 155 4532078 YP_885385.1 CDS MSMEG_0984 NC_008596.1 1054857 1056935 D identified by match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR02123; trap transporter 4tm/12tm fusion protein 1054857..1056935 Mycobacterium smegmatis str. MC2 155 4532844 YP_885386.1 CDS MSMEG_0983 NC_008596.1 1056913 1057566 R identified by match to protein family HMM PF00072; match to protein family HMM PF00196; two-component system response regulator complement(1056913..1057566) Mycobacterium smegmatis str. MC2 155 4532705 YP_885387.1 CDS MSMEG_0985 NC_008596.1 1057684 1059033 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; sugar transporter family protein complement(1057684..1059033) Mycobacterium smegmatis str. MC2 155 4535961 YP_885388.1 CDS MSMEG_0986 NC_008596.1 1059121 1059849 R identified by match to protein family HMM PF00440; RemM protein complement(1059121..1059849) Mycobacterium smegmatis str. MC2 155 4536769 YP_885389.1 CDS MSMEG_0987 NC_008596.1 1059955 1060326 D hypothetical protein 1059955..1060326 Mycobacterium smegmatis str. MC2 155 4535647 YP_885390.1 CDS menA NC_008596.1 1060331 1061200 R catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(1060331..1061200) Mycobacterium smegmatis str. MC2 155 4533285 YP_885391.1 CDS MSMEG_0989 NC_008596.1 1061291 1061536 D hypothetical protein 1061291..1061536 Mycobacterium smegmatis str. MC2 155 4532767 YP_885392.1 CDS mtaP NC_008596.1 1061533 1062312 D Catalyzes the reversible phosphorolysis of 5'-deoxy-5'- methylthioadenosine (MTA) to adenine and 5-methylthio-D-ribose-1- phosphate; 5'-methylthioadenosine phosphorylase 1061533..1062312 Mycobacterium smegmatis str. MC2 155 4532080 YP_885393.1 CDS MSMEG_0991 NC_008596.1 1062309 1063349 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase 1062309..1063349 Mycobacterium smegmatis str. MC2 155 4533177 YP_885394.1 CDS MSMEG_0992 NC_008596.1 1063406 1064533 D identified by match to protein family HMM PF03060; 2-nitropropane dioxygenase 1063406..1064533 Mycobacterium smegmatis str. MC2 155 4535968 YP_885395.1 CDS MSMEG_0993 NC_008596.1 1064543 1065556 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; histidine kinase complement(1064543..1065556) Mycobacterium smegmatis str. MC2 155 4532631 YP_885396.1 CDS resD NC_008596.1 1065553 1066230 R identified by similarity to SP:P35163; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator ResD complement(1065553..1066230) Mycobacterium smegmatis str. MC2 155 4532646 YP_885397.1 CDS MSMEG_0995 NC_008596.1 1066335 1066994 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 1066335..1066994 Mycobacterium smegmatis str. MC2 155 4533245 YP_885398.1 CDS MSMEG_0996 NC_008596.1 1066994 1067647 D hypothetical protein 1066994..1067647 Mycobacterium smegmatis str. MC2 155 4537202 YP_885399.1 CDS MSMEG_0997 NC_008596.1 1067651 1068280 D hypothetical protein 1067651..1068280 Mycobacterium smegmatis str. MC2 155 4532812 YP_885400.1 CDS MSMEG_0998 NC_008596.1 1068322 1069431 D identified by match to protein family HMM PF00174; oxidoreductase, molybdopterin binding 1068322..1069431 Mycobacterium smegmatis str. MC2 155 4536655 YP_885401.1 CDS MSMEG_1000 NC_008596.1 1069356 1069922 D hypothetical protein 1069356..1069922 Mycobacterium smegmatis str. MC2 155 4531609 YP_885402.1 CDS MSMEG_0999 NC_008596.1 1069848 1071212 R integral membrane protein complement(1069848..1071212) Mycobacterium smegmatis str. MC2 155 4533633 YP_885403.1 CDS MSMEG_1001 NC_008596.1 1071264 1072121 D identified by match to protein family HMM PF00583; acetyltransferase, gnat family protein 1071264..1072121 Mycobacterium smegmatis str. MC2 155 4531253 YP_885404.1 CDS MSMEG_1002 NC_008596.1 1072393 1073094 D identified by similarity to GP:150004; match to protein family HMM PF07929; IS1096, tnpR protein 1072393..1073094 Mycobacterium smegmatis str. MC2 155 4535634 YP_885405.1 CDS MSMEG_1003 NC_008596.1 1073102 1074424 R identified by similarity to GP:150005; match to protein family HMM PF01610; IS1096, tnpA protein complement(1073102..1074424) Mycobacterium smegmatis str. MC2 155 4536673 YP_885406.1 CDS MSMEG_1005 NC_008596.1 1074818 1075633 D identified by match to protein family HMM PF01170; methyltransferase type 11 1074818..1075633 Mycobacterium smegmatis str. MC2 155 4536660 YP_885407.1 CDS MSMEG_1006 NC_008596.1 1075656 1076717 D identified by match to protein family HMM PF01636; aminoglycoside phosphotransferase 1075656..1076717 Mycobacterium smegmatis str. MC2 155 4533034 YP_885408.1 CDS MSMEG_1007 NC_008596.1 1076746 1077507 R identified by match to protein family HMM PF01925; transporter complement(1076746..1077507) Mycobacterium smegmatis str. MC2 155 4537101 YP_885409.1 CDS MSMEG_1008 NC_008596.1 1077699 1078190 D hypothetical protein 1077699..1078190 Mycobacterium smegmatis str. MC2 155 4532594 YP_885410.1 CDS MSMEG_1009 NC_008596.1 1078286 1079770 R identified by match to protein family HMM PF00067; cytochrome p450 complement(1078286..1079770) Mycobacterium smegmatis str. MC2 155 4533826 YP_885411.1 CDS MSMEG_1010 NC_008596.1 1079902 1080561 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1079902..1080561 Mycobacterium smegmatis str. MC2 155 4533628 YP_885412.1 CDS MSMEG_1011 NC_008596.1 1080585 1081448 D identified by match to protein family HMM PF00106; short chain dehydrogenase 1080585..1081448 Mycobacterium smegmatis str. MC2 155 4534095 YP_885413.1 CDS MSMEG_1012 NC_008596.1 1081451 1082986 R identified by match to protein family HMM PF00245; alkaline phosphatase complement(1081451..1082986) Mycobacterium smegmatis str. MC2 155 4531950 YP_885414.1 CDS MSMEG_1013 NC_008596.1 1083088 1084272 R hypothetical protein complement(1083088..1084272) Mycobacterium smegmatis str. MC2 155 4537002 YP_885415.1 CDS dinB NC_008596.1 1084283 1085353 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(1084283..1085353) Mycobacterium smegmatis str. MC2 155 4535038 YP_885416.1 CDS MSMEG_1015 NC_008596.1 1085358 1085972 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(1085358..1085972) Mycobacterium smegmatis str. MC2 155 4536955 YP_885417.1 CDS MSMEG_1016 NC_008596.1 1086080 1086643 D identified by match to protein family HMM PF02525; match to protein family HMM PF03358; hypothetical protein 1086080..1086643 Mycobacterium smegmatis str. MC2 155 4534206 YP_885418.1 CDS MSMEG_1017 NC_008596.1 1087117 1087356 D identified by match to protein family HMM PF00462; match to protein family HMM TIGR02194; glutaredoxin 1087117..1087356 Mycobacterium smegmatis str. MC2 155 4535799 YP_885419.1 CDS MSMEG_1019 NC_008596.1 1087851 1089971 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1087851..1089971 Mycobacterium smegmatis str. MC2 155 4535428 YP_885420.1 CDS MSMEG_1021 NC_008596.1 1091275 1091694 R identified by match to protein family HMM PF00903; glyoxalase/bleomycin resistance protein/dioxygenase complement(1091275..1091694) Mycobacterium smegmatis str. MC2 155 4535488 YP_885421.1 CDS MSMEG_1022 NC_008596.1 1091864 1092091 R hypothetical protein complement(1091864..1092091) Mycobacterium smegmatis str. MC2 155 4533002 YP_885422.1 CDS MSMEG_1023 NC_008596.1 1091966 1093375 D identified by match to protein family HMM PF07690; integral membrane transporter 1091966..1093375 Mycobacterium smegmatis str. MC2 155 4533516 YP_885423.1 CDS MSMEG_1024 NC_008596.1 1093372 1093515 D hypothetical protein 1093372..1093515 Mycobacterium smegmatis str. MC2 155 4533974 YP_885424.1 CDS MSMEG_1026 NC_008596.1 1093566 1094417 D identified by match to protein family HMM PF00583; acetyltransferase 1093566..1094417 Mycobacterium smegmatis str. MC2 155 4533208 YP_885425.1 CDS MSMEG_1025 NC_008596.1 1094389 1094964 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(1094389..1094964) Mycobacterium smegmatis str. MC2 155 4535781 YP_885426.1 CDS MSMEG_1027 NC_008596.1 1095088 1095966 D identified by match to protein family HMM PF00296; hypothetical protein 1095088..1095966 Mycobacterium smegmatis str. MC2 155 4535392 YP_885427.1 CDS MSMEG_1028 NC_008596.1 1096036 1097223 R identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR02032; geranylgeranyl reductase complement(1096036..1097223) Mycobacterium smegmatis str. MC2 155 4531953 YP_885428.1 CDS MSMEG_1029 NC_008596.1 1097374 1098111 D identified by match to protein family HMM PF00440; transcriptional regulatory protein 1097374..1098111 Mycobacterium smegmatis str. MC2 155 4531697 YP_885429.1 CDS MSMEG_1030 NC_008596.1 1098227 1099726 D monooxygenase 1098227..1099726 Mycobacterium smegmatis str. MC2 155 4536691 YP_885430.1 CDS MSMEG_1031 NC_008596.1 1099821 1100336 D hypothetical protein 1099821..1100336 Mycobacterium smegmatis str. MC2 155 4532257 YP_885431.1 CDS MSMEG_1032 NC_008596.1 1100390 1100539 D hypothetical protein 1100390..1100539 Mycobacterium smegmatis str. MC2 155 4536242 YP_885432.1 CDS nrdF2 NC_008596.1 1100553 1101527 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 1100553..1101527 Mycobacterium smegmatis str. MC2 155 4535845 YP_885433.1 CDS MSMEG_1034 NC_008596.1 1101597 1102979 D identified by match to protein family HMM PF00756; esterase 1101597..1102979 Mycobacterium smegmatis str. MC2 155 4531139 YP_885434.1 CDS MSMEG_1035 NC_008596.1 1102979 1104559 D hypothetical protein 1102979..1104559 Mycobacterium smegmatis str. MC2 155 4536436 YP_885435.1 CDS MSMEG_1037 NC_008596.1 1106170 1107219 R identified by match to protein family HMM PF00107; alcohol dehydrogenase complement(1106170..1107219) Mycobacterium smegmatis str. MC2 155 4534163 YP_885436.1 CDS MSMEG_1038 NC_008596.1 1107407 1107682 R identified by match to protein family HMM PF03795; GTP cyclohydrolase II complement(1107407..1107682) Mycobacterium smegmatis str. MC2 155 4534277 YP_885437.1 CDS MSMEG_1039 NC_008596.1 1107692 1108765 R identified by match to protein family HMM PF01497; periplasmic binding protein complement(1107692..1108765) Mycobacterium smegmatis str. MC2 155 4536537 YP_885438.1 CDS serB NC_008596.1 1110747 1111988 D identified by match to protein family HMM PF00702; match to protein family HMM PF01842; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488; phosphoserine phosphatase 1110747..1111988 Mycobacterium smegmatis str. MC2 155 4533908 YP_885439.1 CDS MSMEG_1042 NC_008596.1 1112116 1112409 D hypothetical protein 1112116..1112409 Mycobacterium smegmatis str. MC2 155 4537428 YP_885440.1 CDS MSMEG_1043 NC_008596.1 1112411 1113850 R identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator complement(1112411..1113850) Mycobacterium smegmatis str. MC2 155 4531427 YP_885441.1 CDS MSMEG_1044 NC_008596.1 1113914 1114060 D hypothetical protein 1113914..1114060 Mycobacterium smegmatis str. MC2 155 4533948 YP_885442.1 CDS MSMEG_1045 NC_008596.1 1114057 1114752 D identified by match to protein family HMM PF02588; integral membrane protein 1114057..1114752 Mycobacterium smegmatis str. MC2 155 4536556 YP_885443.1 CDS MSMEG_1046 NC_008596.1 1114707 1115555 D identified by match to protein family HMM PF00005; molybdenum ABC transporter ATPase 1114707..1115555 Mycobacterium smegmatis str. MC2 155 4532658 YP_885444.1 CDS MSMEG_1047 NC_008596.1 1115548 1116369 D identified by match to protein family HMM PF00293; nudix hydrolase 1115548..1116369 Mycobacterium smegmatis str. MC2 155 4531044 YP_885445.1 CDS MSMEG_1048 NC_008596.1 1116366 1117073 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1116366..1117073 Mycobacterium smegmatis str. MC2 155 4535899 YP_885446.1 CDS MSMEG_1049 NC_008596.1 1117108 1118088 D UbiE/COQ5 family methyltransferase 1117108..1118088 Mycobacterium smegmatis str. MC2 155 4536797 YP_885447.1 CDS MSMEG_1050 NC_008596.1 1118097 1119260 D SAM-dependent methyltransferase 1118097..1119260 Mycobacterium smegmatis str. MC2 155 4536557 YP_885448.1 CDS MSMEG_1051 NC_008596.1 1119333 1120034 D hypothetical protein 1119333..1120034 Mycobacterium smegmatis str. MC2 155 4537187 YP_885449.1 CDS MSMEG_1052 NC_008596.1 1120066 1121610 R identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; amino acid carrier protein complement(1120066..1121610) Mycobacterium smegmatis str. MC2 155 4532869 YP_885450.1 CDS MSMEG_1054 NC_008596.1 1121617 1121739 D hypothetical protein 1121617..1121739 Mycobacterium smegmatis str. MC2 155 4535070 YP_885451.1 CDS MSMEG_1053 NC_008596.1 1121728 1123011 R hypothetical protein complement(1121728..1123011) Mycobacterium smegmatis str. MC2 155 4532309 YP_885452.1 CDS MSMEG_1055 NC_008596.1 1123108 1123851 D identified by match to protein family HMM PF00132; hexapeptide transferase 1123108..1123851 Mycobacterium smegmatis str. MC2 155 4530922 YP_885453.1 CDS fni NC_008596.1 1124625 1125650 D catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 1124625..1125650 Mycobacterium smegmatis str. MC2 155 4532719 YP_885454.1 CDS MSMEG_1058 NC_008596.1 1125683 1126309 D identified by similarity to GP:150004; match to protein family HMM PF07929; IS1096, tnpR protein 1125683..1126309 Mycobacterium smegmatis str. MC2 155 4536199 YP_885455.1 CDS MSMEG_1059 NC_008596.1 1126317 1127639 R identified by similarity to GP:150005; match to protein family HMM PF01610; IS1096, tnpA protein complement(1126317..1127639) Mycobacterium smegmatis str. MC2 155 4535894 YP_885456.1 CDS MSMEG_1060 NC_008596.1 1127726 1128130 R Lsr2 protein complement(1127726..1128130) Mycobacterium smegmatis str. MC2 155 4531591 YP_885457.1 CDS MSMEG_1061 NC_008596.1 1128363 1128977 R identified by match to protein family HMM PF01243; phosphohydrolase complement(1128363..1128977) Mycobacterium smegmatis str. MC2 155 4531890 YP_885458.1 CDS MSMEG_1062 NC_008596.1 1129017 1130057 R identified by match to protein family HMM PF00501; O-succinylbenzoic acid--CoA ligase complement(1129017..1130057) Mycobacterium smegmatis str. MC2 155 4535095 YP_885459.1 CDS MSMEG_1063 NC_008596.1 1130153 1130476 R hypothetical protein complement(1130153..1130476) Mycobacterium smegmatis str. MC2 155 4535372 YP_885460.1 CDS MSMEG_1064 NC_008596.1 1130758 1132014 D identified by match to protein family HMM PF01384; phosphate/sulfate permease 1130758..1132014 Mycobacterium smegmatis str. MC2 155 4534842 YP_885461.1 CDS MSMEG_1065 NC_008596.1 1132030 1132308 D hypothetical protein 1132030..1132308 Mycobacterium smegmatis str. MC2 155 4536951 YP_885462.1 CDS MSMEG_1066 NC_008596.1 1132310 1132621 D hypothetical protein 1132310..1132621 Mycobacterium smegmatis str. MC2 155 4533882 YP_885463.1 CDS MSMEG_1067 NC_008596.1 1132639 1133010 R identified by match to protein family HMM PF00903; hypothetical protein complement(1132639..1133010) Mycobacterium smegmatis str. MC2 155 4532030 YP_885464.1 CDS MSMEG_1068 NC_008596.1 1133059 1134474 R identified by match to protein family HMM PF07905; regulatory protein complement(1133059..1134474) Mycobacterium smegmatis str. MC2 155 4534029 YP_885465.1 CDS MSMEG_1069 NC_008596.1 1134639 1136105 D identified by match to protein family HMM PF00324; amino acid permease 1134639..1136105 Mycobacterium smegmatis str. MC2 155 4532428 YP_885466.1 CDS MSMEG_1070 NC_008596.1 1136102 1136797 D identified by match to protein family HMM PF00106; 3-oxoacyl-ACP reductase 1136102..1136797 Mycobacterium smegmatis str. MC2 155 4534017 YP_885467.1 CDS MSMEG_1071 NC_008596.1 1136794 1137555 D identified by match to protein family HMM PF00106; 3-oxoacyl-ACP reductase 1136794..1137555 Mycobacterium smegmatis str. MC2 155 4533986 YP_885468.1 CDS speB NC_008596.1 1137579 1138550 D identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; agmatinase 1137579..1138550 Mycobacterium smegmatis str. MC2 155 4535378 YP_885469.1 CDS MSMEG_1074 NC_008596.1 1138540 1139403 D identified by match to protein family HMM PF01522; polysaccharide deacetylase 1138540..1139403 Mycobacterium smegmatis str. MC2 155 4530977 YP_885470.1 CDS MSMEG_1073 NC_008596.1 1139384 1140298 R identified by match to protein family HMM PF00106; short chain dehydrogenase complement(1139384..1140298) Mycobacterium smegmatis str. MC2 155 4533824 YP_885471.1 CDS menB NC_008596.1 1140401 1141330 R catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase complement(1140401..1141330) Mycobacterium smegmatis str. MC2 155 4531869 YP_885472.1 CDS MSMEG_1076 NC_008596.1 1141429 1141704 D hypothetical protein 1141429..1141704 Mycobacterium smegmatis str. MC2 155 4536548 YP_885473.1 CDS MSMEG_1077 NC_008596.1 1141706 1142155 R identified by match to protein family HMM TIGR00026; hypothetical protein complement(1141706..1142155) Mycobacterium smegmatis str. MC2 155 4532895 YP_885474.1 CDS MSMEG_1078 NC_008596.1 1142177 1142866 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; hydrolase complement(1142177..1142866) Mycobacterium smegmatis str. MC2 155 4532270 YP_885475.1 CDS MSMEG_1079 NC_008596.1 1143028 1143432 D hypothetical protein 1143028..1143432 Mycobacterium smegmatis str. MC2 155 4537324 YP_885476.1 CDS MSMEG_1080 NC_008596.1 1143429 1145873 D large subunit of N,N-dimethylformamidase 1143429..1145873 Mycobacterium smegmatis str. MC2 155 4531046 YP_885477.1 CDS MSMEG_1081 NC_008596.1 1145899 1146657 D hypothetical protein 1145899..1146657 Mycobacterium smegmatis str. MC2 155 4532454 YP_885478.1 CDS MSMEG_1082 NC_008596.1 1146756 1147487 D identified by match to protein family HMM PF00196; response regulator 1146756..1147487 Mycobacterium smegmatis str. MC2 155 4537523 YP_885479.1 CDS MSMEG_1083 NC_008596.1 1147565 1147696 R hypothetical protein complement(1147565..1147696) Mycobacterium smegmatis str. MC2 155 4533097 YP_885480.1 CDS MSMEG_1084 NC_008596.1 1147718 1149322 D identified by match to protein family HMM PF00496; peptide/opine/nickel uptake family protein ABC transporter periplasmic substrate-binding protein 1147718..1149322 Mycobacterium smegmatis str. MC2 155 4533767 YP_885481.1 CDS MSMEG_1085 NC_008596.1 1149333 1150292 D identified by match to protein family HMM PF00528; dipeptide transporter permease DppB 1149333..1150292 Mycobacterium smegmatis str. MC2 155 4532445 YP_885482.1 CDS MSMEG_1086 NC_008596.1 1150289 1151224 D identified by match to protein family HMM PF00528; ABC transporter permease 1150289..1151224 Mycobacterium smegmatis str. MC2 155 4537578 YP_885483.1 CDS gatA NC_008596.1 1152901 1154301 D identified by match to protein family HMM PF01425; glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase subunit alpha 1152901..1154301 Mycobacterium smegmatis str. MC2 155 4531196 YP_885484.1 CDS MSMEG_1089 NC_008596.1 1154316 1154507 D hypothetical protein 1154316..1154507 Mycobacterium smegmatis str. MC2 155 4536584 YP_885485.1 CDS MSMEG_1090 NC_008596.1 1154545 1155951 D identified by match to protein family HMM PF01425; amidase 1154545..1155951 Mycobacterium smegmatis str. MC2 155 4536693 YP_885486.1 CDS ureE NC_008596.1 1155953 1156411 D involved in the assembly of the urease metallocenter; nickel donor; urease accessory protein UreE 1155953..1156411 Mycobacterium smegmatis str. MC2 155 4534231 YP_885487.1 CDS MSMEG_1092 NC_008596.1 1156408 1157070 D identified by match to protein family HMM PF01730; urease accessory protein UreF 1156408..1157070 Mycobacterium smegmatis str. MC2 155 4536084 YP_885488.1 CDS MSMEG_1093 NC_008596.1 1157081 1157737 D ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; bifunctional urease subunit gamma/beta 1157081..1157737 Mycobacterium smegmatis str. MC2 155 4536404 YP_885489.1 CDS ureC NC_008596.1 1157739 1159445 D ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 1157739..1159445 Mycobacterium smegmatis str. MC2 155 4533589 YP_885490.1 CDS ureG NC_008596.1 1159442 1160059 D identified by match to protein family HMM PF02492; match to protein family HMM TIGR00101; urease accessory protein UreG 1159442..1160059 Mycobacterium smegmatis str. MC2 155 4532659 YP_885491.1 CDS MSMEG_1096 NC_008596.1 1160056 1160871 D urease accessory protein UreD 1160056..1160871 Mycobacterium smegmatis str. MC2 155 4534383 YP_885492.1 CDS MSMEG_1097 NC_008596.1 1160901 1161584 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 1160901..1161584 Mycobacterium smegmatis str. MC2 155 4533269 YP_885493.1 CDS MSMEG_1098 NC_008596.1 1161655 1163274 R activates fatty acids by binding to coenzyme A; acyl-CoA synthetase complement(1161655..1163274) Mycobacterium smegmatis str. MC2 155 4534972 YP_885494.1 CDS MSMEG_1099 NC_008596.1 1163456 1163758 R hypothetical protein complement(1163456..1163758) Mycobacterium smegmatis str. MC2 155 4535996 YP_885495.1 CDS MSMEG_1100 NC_008596.1 1163698 1164150 R identified by match to protein family HMM PF04946; DGPFAETKE domain-containing protein complement(1163698..1164150) Mycobacterium smegmatis str. MC2 155 4530817 YP_885496.1 CDS MSMEG_1101 NC_008596.1 1164280 1165446 D hypothetical protein 1164280..1165446 Mycobacterium smegmatis str. MC2 155 4535944 YP_885497.1 CDS MSMEG_1102 NC_008596.1 1165456 1167066 D identified by match to protein family HMM PF07969; twin-arginine translocation pathway signal 1165456..1167066 Mycobacterium smegmatis str. MC2 155 4532012 YP_885498.1 CDS MSMEG_1103 NC_008596.1 1167087 1168052 D catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 1167087..1168052 Mycobacterium smegmatis str. MC2 155 4532162 YP_885499.1 CDS MSMEG_1104 NC_008596.1 1168409 1168600 D hypothetical protein 1168409..1168600 Mycobacterium smegmatis str. MC2 155 4532548 YP_885500.1 CDS MSMEG_1106 NC_008596.1 1169847 1170854 D identified by match to protein family HMM PF00165; match to protein family HMM PF01965; AraC family transcriptional regulator 1169847..1170854 Mycobacterium smegmatis str. MC2 155 4537136 YP_885501.1 CDS MSMEG_1107 NC_008596.1 1170870 1171601 D identified by match to protein family HMM PF01965; isonitrile hydratase 1170870..1171601 Mycobacterium smegmatis str. MC2 155 4536265 YP_885502.1 CDS MSMEG_1108 NC_008596.1 1171579 1172457 D identified by match to protein family HMM PF00561; alpha/beta hydrolase 1171579..1172457 Mycobacterium smegmatis str. MC2 155 4533513 YP_885503.1 CDS MSMEG_1109 NC_008596.1 1172457 1174100 D SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 1172457..1174100 Mycobacterium smegmatis str. MC2 155 4537235 YP_885504.1 CDS MSMEG_1110 NC_008596.1 1174103 1174594 D transmembrane protein 1174103..1174594 Mycobacterium smegmatis str. MC2 155 4536873 YP_885505.1 CDS MSMEG_1111 NC_008596.1 1174598 1175296 R hypothetical protein complement(1174598..1175296) Mycobacterium smegmatis str. MC2 155 4533220 YP_885506.1 CDS MSMEG_1113 NC_008596.1 1175363 1176490 D identified by match to protein family HMM PF00534; glycosyl transferase family protein 1175363..1176490 Mycobacterium smegmatis str. MC2 155 4534281 YP_885507.1 CDS MSMEG_1112 NC_008596.1 1176487 1178451 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(1176487..1178451) Mycobacterium smegmatis str. MC2 155 4535508 YP_885508.1 CDS MSMEG_1114 NC_008596.1 1178579 1179403 R identified by match to protein family HMM PF00106; short chain dehydrogenase complement(1178579..1179403) Mycobacterium smegmatis str. MC2 155 4533572 YP_885509.1 CDS ubiE NC_008596.1 1179533 1180222 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 1179533..1180222 Mycobacterium smegmatis str. MC2 155 4534306 YP_885510.1 CDS MSMEG_1116 NC_008596.1 1180363 1181715 R identified by match to protein family HMM PF00120; gamma-glutamylisopropylamide synthetase complement(1180363..1181715) Mycobacterium smegmatis str. MC2 155 4532821 YP_885511.1 CDS MSMEG_1117 NC_008596.1 1181811 1182530 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; transcriptional regulator 1181811..1182530 Mycobacterium smegmatis str. MC2 155 4532203 YP_885512.1 CDS MSMEG_1118 NC_008596.1 1182618 1184153 D identified by match to protein family HMM PF00324; amino acid permease 1182618..1184153 Mycobacterium smegmatis str. MC2 155 4531421 YP_885513.1 CDS MSMEG_1119 NC_008596.1 1184153 1184869 D identified by match to protein family HMM PF00117; match to protein family HMM PF07722; glutamine amidotransferase 1184153..1184869 Mycobacterium smegmatis str. MC2 155 4531497 YP_885514.1 CDS MSMEG_1120 NC_008596.1 1184860 1185837 D identified by match to protein family HMM PF00795; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1184860..1185837 Mycobacterium smegmatis str. MC2 155 4532635 YP_885515.1 CDS MSMEG_1121 NC_008596.1 1185840 1186217 D hypothetical protein 1185840..1186217 Mycobacterium smegmatis str. MC2 155 4534934 YP_885516.1 CDS MSMEG_1122 NC_008596.1 1186298 1186426 R hypothetical protein complement(1186298..1186426) Mycobacterium smegmatis str. MC2 155 4534057 YP_885517.1 CDS MSMEG_1123 NC_008596.1 1186442 1187440 D identified by match to protein family HMM PF02492; match to protein family HMM PF07683; cobalamin synthesis protein 1186442..1187440 Mycobacterium smegmatis str. MC2 155 4536837 YP_885518.1 CDS MSMEG_1124 NC_008596.1 1187553 1187897 D identified by match to protein family HMM PF00037; ferredoxin FdxA 1187553..1187897 Mycobacterium smegmatis str. MC2 155 4531146 YP_885519.1 CDS MSMEG_1125 NC_008596.1 1187897 1188550 D identified by match to protein family HMM PF01726; ArsR family transcriptional regulator 1187897..1188550 Mycobacterium smegmatis str. MC2 155 4533189 YP_885520.1 CDS MSMEG_1126 NC_008596.1 1188580 1188864 D hypothetical protein 1188580..1188864 Mycobacterium smegmatis str. MC2 155 4536886 YP_885521.1 CDS MSMEG_1127 NC_008596.1 1188880 1189476 D transmembrane protein 1188880..1189476 Mycobacterium smegmatis str. MC2 155 4531829 YP_885522.1 CDS MSMEG_1128 NC_008596.1 1189652 1189771 R hypothetical protein complement(1189652..1189771) Mycobacterium smegmatis str. MC2 155 4537488 YP_885523.1 CDS MSMEG_1129 NC_008596.1 1189972 1191243 D identified by match to protein family HMM PF01266; D-amino-acid dehydrogenase 1189972..1191243 Mycobacterium smegmatis str. MC2 155 4531174 YP_885524.1 CDS MSMEG_1130 NC_008596.1 1191772 1192899 D hypothetical protein 1191772..1192899 Mycobacterium smegmatis str. MC2 155 4534567 YP_885525.1 CDS MSMEG_1131 NC_008596.1 1192990 1193475 D identified by match to protein family HMM PF03073; tryptophan-rich sensory protein 1192990..1193475 Mycobacterium smegmatis str. MC2 155 4531087 YP_885526.1 CDS MSMEG_1132 NC_008596.1 1193567 1194796 R identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF04820; match to protein family HMM PF05834; match to protein family HMM PF07992; match to protein family HMM TIGR02032; FAD binding domain-containing protein complement(1193567..1194796) Mycobacterium smegmatis str. MC2 155 4534182 YP_885527.1 CDS MSMEG_1133 NC_008596.1 1194836 1195825 D identified by match to protein family HMM PF00348; bifunctional short chain isoprenyl diphosphate synthase 1194836..1195825 Mycobacterium smegmatis str. MC2 155 4536561 YP_885528.1 CDS MSMEG_1134 NC_008596.1 1195912 1196799 D metalloprotease; heat shock protein HtpX 1195912..1196799 Mycobacterium smegmatis str. MC2 155 4531903 YP_885529.1 CDS MSMEG_1135 NC_008596.1 1197495 1197794 D hypothetical protein 1197495..1197794 Mycobacterium smegmatis str. MC2 155 4536919 YP_885530.1 CDS MSMEG_1136 NC_008596.1 1197841 1198365 D hypothetical protein 1197841..1198365 Mycobacterium smegmatis str. MC2 155 4536212 YP_885531.1 CDS MSMEG_1137 NC_008596.1 1198367 1199806 R identified by match to protein family HMM PF00324; amino acid permease complement(1198367..1199806) Mycobacterium smegmatis str. MC2 155 4537720 YP_885532.1 CDS MSMEG_1138 NC_008596.1 1199825 1200961 R identified by match to protein family HMM PF00107; alcohol dehydrogenase complement(1199825..1200961) Mycobacterium smegmatis str. MC2 155 4531156 YP_885533.1 CDS MSMEG_1139 NC_008596.1 1201113 1201682 D identified by match to protein family HMM PF01381; match to protein family HMM PF07883; transcriptional regulator 1201113..1201682 Mycobacterium smegmatis str. MC2 155 4534423 YP_885534.1 CDS MSMEG_1140 NC_008596.1 1201699 1202724 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(1201699..1202724) Mycobacterium smegmatis str. MC2 155 4536132 YP_885535.1 CDS MSMEG_1141 NC_008596.1 1203291 1204160 D identified by match to protein family HMM PF02405; ABC transporter 1203291..1204160 Mycobacterium smegmatis str. MC2 155 4532283 YP_885536.1 CDS MSMEG_1142 NC_008596.1 1204162 1205019 D identified by match to protein family HMM PF02405; ABC transporter 1204162..1205019 Mycobacterium smegmatis str. MC2 155 4531952 YP_885537.1 CDS MSMEG_1143 NC_008596.1 1205021 1206625 D identified by match to protein family HMM PF02470; mce related protein 1205021..1206625 Mycobacterium smegmatis str. MC2 155 4531221 YP_885538.1 CDS MSMEG_1144 NC_008596.1 1206622 1207677 D identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor Mce family protein 1206622..1207677 Mycobacterium smegmatis str. MC2 155 4536698 YP_885539.1 CDS MSMEG_1145 NC_008596.1 1207670 1208710 D identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor Mce family protein 1207670..1208710 Mycobacterium smegmatis str. MC2 155 4533386 YP_885540.1 CDS MSMEG_1146 NC_008596.1 1208707 1209828 D identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor Mce family protein 1208707..1209828 Mycobacterium smegmatis str. MC2 155 4537427 YP_885541.1 CDS MSMEG_1147 NC_008596.1 1209825 1211105 D identified by match to protein family HMM PF02470; mce related protein 1209825..1211105 Mycobacterium smegmatis str. MC2 155 4532262 YP_885542.1 CDS MSMEG_1148 NC_008596.1 1211102 1212358 D identified by match to protein family HMM PF02470; mce related protein 1211102..1212358 Mycobacterium smegmatis str. MC2 155 4531815 YP_885543.1 CDS MSMEG_1149 NC_008596.1 1212385 1213071 D hypothetical protein 1212385..1213071 Mycobacterium smegmatis str. MC2 155 4537366 YP_885544.1 CDS MSMEG_1150 NC_008596.1 1213041 1213862 D hypothetical protein 1213041..1213862 Mycobacterium smegmatis str. MC2 155 4537018 YP_885545.1 CDS MSMEG_1151 NC_008596.1 1214090 1214695 D identified by match to protein family HMM PF01381; match to protein family HMM PF07883; DNA-binding protein 1214090..1214695 Mycobacterium smegmatis str. MC2 155 4531340 YP_885546.1 CDS MSMEG_1152 NC_008596.1 1214846 1216132 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; citrate-proton symporter 1214846..1216132 Mycobacterium smegmatis str. MC2 155 4535357 YP_885547.1 CDS MSMEG_1153 NC_008596.1 1216141 1217541 D identified by match to protein family HMM PF00890; match to protein family HMM PF01266; FAD dependent oxidoreductase 1216141..1217541 Mycobacterium smegmatis str. MC2 155 4534637 YP_885548.1 CDS MSMEG_1154 NC_008596.1 1217538 1218719 D identified by match to protein family HMM PF02515; formyl-coenzyme A transferase 1217538..1218719 Mycobacterium smegmatis str. MC2 155 4535157 YP_885549.1 CDS MSMEG_1155 NC_008596.1 1218716 1219522 D identified by match to protein family HMM PF00378; carnitinyl-CoA dehydratase 1218716..1219522 Mycobacterium smegmatis str. MC2 155 4530876 YP_885550.1 CDS MSMEG_1156 NC_008596.1 1219519 1220406 D identified by match to protein family HMM PF00701; dihydrodipicolinate synthetase 1219519..1220406 Mycobacterium smegmatis str. MC2 155 4531626 YP_885551.1 CDS MSMEG_1157 NC_008596.1 1220407 1221180 D identified by match to protein family HMM PF00106; short chain dehydrogenase 1220407..1221180 Mycobacterium smegmatis str. MC2 155 4533491 YP_885552.1 CDS MSMEG_1158 NC_008596.1 1221223 1222650 D identified by match to protein family HMM PF00171; 5-oxovalerate dehydrogenase 1221223..1222650 Mycobacterium smegmatis str. MC2 155 4537648 YP_885553.1 CDS MSMEG_1159 NC_008596.1 1222785 1223855 D ABC transporter 1222785..1223855 Mycobacterium smegmatis str. MC2 155 4531372 YP_885554.1 CDS MSMEG_1160 NC_008596.1 1223852 1224655 D identified by match to protein family HMM PF00005; nitrate/sulfonate/bicarbonate ABC transporter ATPase 1223852..1224655 Mycobacterium smegmatis str. MC2 155 4534770 YP_885555.1 CDS MSMEG_1161 NC_008596.1 1224687 1225493 D identified by match to protein family HMM PF00528; taurine transporter permease TauC 1224687..1225493 Mycobacterium smegmatis str. MC2 155 4530841 YP_885556.1 CDS MSMEG_1162 NC_008596.1 1225516 1226862 D nitrilotriacetate monooxygenase component A 1225516..1226862 Mycobacterium smegmatis str. MC2 155 4532149 YP_885557.1 CDS MSMEG_1163 NC_008596.1 1226859 1226981 D hypothetical protein 1226859..1226981 Mycobacterium smegmatis str. MC2 155 4534532 YP_885558.1 CDS MSMEG_1165 NC_008596.1 1227792 1228283 R nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein complement(1227792..1228283) Mycobacterium smegmatis str. MC2 155 4532406 YP_885559.1 CDS MSMEG_1167 NC_008596.1 1228550 1229989 R identified by match to protein family HMM PF00067; cytochrome P450 complement(1228550..1229989) Mycobacterium smegmatis str. MC2 155 4532797 YP_885560.1 CDS MSMEG_1168 NC_008596.1 1230134 1230784 D transcriptional regulator 1230134..1230784 Mycobacterium smegmatis str. MC2 155 4534619 YP_885561.1 CDS MSMEG_1169 NC_008596.1 1230896 1232140 D identified by match to protein family HMM PF07690; integral membrane transporter 1230896..1232140 Mycobacterium smegmatis str. MC2 155 4531548 YP_885562.1 CDS MSMEG_1170 NC_008596.1 1232200 1232415 D hypothetical protein 1232200..1232415 Mycobacterium smegmatis str. MC2 155 4532409 YP_885563.1 CDS MSMEG_1171 NC_008596.1 1232517 1232927 R identified by match to protein family HMM PF01451; low molecular weight phosphotyrosine protein phosphatase complement(1232517..1232927) Mycobacterium smegmatis str. MC2 155 4535661 YP_885564.1 CDS arsB NC_008596.1 1232924 1234000 R identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832; arsenic resistance protein complement(1232924..1234000) Mycobacterium smegmatis str. MC2 155 4534573 YP_885565.1 CDS MSMEG_1173 NC_008596.1 1233997 1234368 R identified by match to protein family HMM PF01022; ArsR family transcriptional regulator complement(1233997..1234368) Mycobacterium smegmatis str. MC2 155 4531935 YP_885566.1 CDS MSMEG_1174 NC_008596.1 1234447 1234911 R identified by match to protein family HMM PF00903; cadmium inducible protein cadi complement(1234447..1234911) Mycobacterium smegmatis str. MC2 155 4536329 YP_885567.1 CDS MSMEG_1175 NC_008596.1 1235012 1235371 D identified by match to protein family HMM PF01022; transcriptional regulatory protein 1235012..1235371 Mycobacterium smegmatis str. MC2 155 4531648 YP_885568.1 CDS MSMEG_1176 NC_008596.1 1235405 1236928 D hypothetical protein 1235405..1236928 Mycobacterium smegmatis str. MC2 155 4534786 YP_885569.1 CDS MSMEG_1177 NC_008596.1 1236938 1238374 R identified by match to protein family HMM PF02133; cytosine/purines uracil thiamine allantoin permease complement(1236938..1238374) Mycobacterium smegmatis str. MC2 155 4536032 YP_885570.1 CDS MSMEG_1178 NC_008596.1 1238701 1239618 D identified by match to protein family HMM PF01418; transcriptional regulator 1238701..1239618 Mycobacterium smegmatis str. MC2 155 4536241 YP_885571.1 CDS hutU NC_008596.1 1239680 1241338 D catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 1239680..1241338 Mycobacterium smegmatis str. MC2 155 4535946 YP_885572.1 CDS MSMEG_1180 NC_008596.1 1241335 1242549 D allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 1241335..1242549 Mycobacterium smegmatis str. MC2 155 4537008 YP_885573.1 CDS hutF NC_008596.1 1242546 1243877 D catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase 1242546..1243877 Mycobacterium smegmatis str. MC2 155 4533838 YP_885574.1 CDS hutI NC_008596.1 1243874 1245064 D catalyzes the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 1243874..1245064 Mycobacterium smegmatis str. MC2 155 4533173 YP_885575.1 CDS hutH NC_008596.1 1245061 1246605 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 1245061..1246605 Mycobacterium smegmatis str. MC2 155 4536399 YP_885576.1 CDS MSMEG_1184 NC_008596.1 1246704 1247582 D identified by match to protein family HMM PF01083; serine esterase, cutinase 1246704..1247582 Mycobacterium smegmatis str. MC2 155 4536672 YP_885577.1 CDS MSMEG_1185 NC_008596.1 1247625 1248647 R identified by match to protein family HMM PF01037; AsnC family transcriptional regulator complement(1247625..1248647) Mycobacterium smegmatis str. MC2 155 4536690 YP_885578.1 CDS MSMEG_1186 NC_008596.1 1248910 1250229 D identified by match to protein family HMM PF03553; match to protein family HMM PF03600; permease 1248910..1250229 Mycobacterium smegmatis str. MC2 155 4536418 YP_885579.1 CDS MSMEG_1187 NC_008596.1 1250238 1251833 D identified by match to protein family HMM PF01979; match to protein family HMM PF07908; match to protein family HMM PF07969; N-acyl-D-aspartate deacylase 1250238..1251833 Mycobacterium smegmatis str. MC2 155 4533932 YP_885580.1 CDS MSMEG_1188 NC_008596.1 1251852 1253759 R hypothetical protein complement(1251852..1253759) Mycobacterium smegmatis str. MC2 155 4532944 YP_885581.1 CDS MSMEG_1189 NC_008596.1 1253948 1255630 D hypothetical protein 1253948..1255630 Mycobacterium smegmatis str. MC2 155 4536697 YP_885582.1 CDS MSMEG_1190 NC_008596.1 1255770 1257644 D identified by match to protein family HMM PF00069; serine/threonine protein kinase 1255770..1257644 Mycobacterium smegmatis str. MC2 155 4532370 YP_885583.1 CDS MSMEG_1191 NC_008596.1 1257700 1257921 R hypothetical protein complement(1257700..1257921) Mycobacterium smegmatis str. MC2 155 4534954 YP_885584.1 CDS MSMEG_1192 NC_008596.1 1257963 1259165 R identified by match to protein family HMM PF01551; M23 peptidase domain-containing protein complement(1257963..1259165) Mycobacterium smegmatis str. MC2 155 4534265 YP_885585.1 CDS MSMEG_1193 NC_008596.1 1259580 1261274 D identified by match to protein family HMM PF05731; TROVE domain-containing protein 1259580..1261274 Mycobacterium smegmatis str. MC2 155 4534606 YP_885586.1 CDS MSMEG_1194 NC_008596.1 1261318 1261740 R hypothetical protein complement(1261318..1261740) Mycobacterium smegmatis str. MC2 155 4534709 YP_885587.1 CDS MSMEG_1195 NC_008596.1 1261917 1263128 D hypothetical protein 1261917..1263128 Mycobacterium smegmatis str. MC2 155 4533549 YP_885588.1 CDS MSMEG_1196 NC_008596.1 1263197 1265188 R identified by match to protein family HMM PF00176; SNF2 domain-containing protein complement(1263197..1265188) Mycobacterium smegmatis str. MC2 155 4534002 YP_885589.1 CDS MSMEG_1197 NC_008596.1 1265252 1265509 R identified by match to protein family HMM PF00196; LuxR family transcriptional regulator complement(1265252..1265509) Mycobacterium smegmatis str. MC2 155 4536696 YP_885590.1 CDS MSMEG_1198 NC_008596.1 1265675 1266436 D hypothetical protein 1265675..1266436 Mycobacterium smegmatis str. MC2 155 4536286 YP_885591.1 CDS MSMEG_1199 NC_008596.1 1266507 1268882 R identified by match to protein family HMM PF03706; match to protein family HMM TIGR00374; hypothetical protein complement(1266507..1268882) Mycobacterium smegmatis str. MC2 155 4532598 YP_885592.1 CDS MSMEG_1200 NC_008596.1 1269105 1270931 D identified by match to protein family HMM PF00069; match to protein family HMM PF00497; serine/threonine protein kinase 1269105..1270931 Mycobacterium smegmatis str. MC2 155 4535464 YP_885593.1 CDS MSMEG_1201 NC_008596.1 1270939 1271619 R hypothetical protein complement(1270939..1271619) Mycobacterium smegmatis str. MC2 155 4536112 YP_885594.1 CDS MSMEG_1202 NC_008596.1 1271693 1271971 D hypothetical protein 1271693..1271971 Mycobacterium smegmatis str. MC2 155 4534617 YP_885595.1 CDS MSMEG_1204 NC_008596.1 1272165 1273415 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 1272165..1273415 Mycobacterium smegmatis str. MC2 155 4536280 YP_885596.1 CDS MSMEG_1203 NC_008596.1 1273412 1274296 R identified by match to protein family HMM PF02353; methoxy mycolic acid synthase 1 complement(1273412..1274296) Mycobacterium smegmatis str. MC2 155 4536332 YP_885597.1 CDS MSMEG_1205 NC_008596.1 1274296 1275219 R identified by match to protein family HMM PF02353; cyclopropane-fatty-acyl-phospholipid synthase complement(1274296..1275219) Mycobacterium smegmatis str. MC2 155 4533780 YP_885598.1 CDS MSMEG_1206 NC_008596.1 1275439 1275573 R hypothetical protein complement(1275439..1275573) Mycobacterium smegmatis str. MC2 155 4531012 YP_885599.1 CDS MSMEG_1207 NC_008596.1 1276157 1277335 D identified by match to protein family HMM PF00534; glycosyltransferase, group I 1276157..1277335 Mycobacterium smegmatis str. MC2 155 4536335 YP_885600.1 CDS MSMEG_1208 NC_008596.1 1277332 1278369 D glycosyltransferase, group I 1277332..1278369 Mycobacterium smegmatis str. MC2 155 4536926 YP_885601.1 CDS MSMEG_1209 NC_008596.1 1278387 1279841 D identified by match to protein family HMM PF04041; glycosidase 1278387..1279841 Mycobacterium smegmatis str. MC2 155 4537470 YP_885602.1 CDS MSMEG_1210 NC_008596.1 1279842 1280711 R identified by match to protein family HMM PF01936; hypothetical protein complement(1279842..1280711) Mycobacterium smegmatis str. MC2 155 4534186 YP_885603.1 CDS MSMEG_1211 NC_008596.1 1280838 1281929 D identified by match to protein family HMM PF00487; Fatty acid desaturase 1280838..1281929 Mycobacterium smegmatis str. MC2 155 4535722 YP_885604.1 CDS MSMEG_1212 NC_008596.1 1282273 1282482 D hypothetical protein 1282273..1282482 Mycobacterium smegmatis str. MC2 155 4535102 YP_885605.1 CDS MSMEG_1213 NC_008596.1 1282629 1283942 D identified by match to protein family HMM PF00067; cytochrome P450 monooxygenase 1282629..1283942 Mycobacterium smegmatis str. MC2 155 4531319 YP_885606.1 CDS MSMEG_1214 NC_008596.1 1283977 1284996 D identified by match to protein family HMM PF07995; oxidoreductase 1283977..1284996 Mycobacterium smegmatis str. MC2 155 4534103 YP_885607.1 CDS MSMEG_1215 NC_008596.1 1285067 1285705 D serine/threonine protein kinase 1285067..1285705 Mycobacterium smegmatis str. MC2 155 4531520 YP_885608.1 CDS MSMEG_1216 NC_008596.1 1285707 1287002 R identified by match to protein family HMM PF01094; ABC transporter periplasmic protein complement(1285707..1287002) Mycobacterium smegmatis str. MC2 155 4534284 YP_885609.1 CDS MSMEG_1217 NC_008596.1 1287035 1287748 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1287035..1287748) Mycobacterium smegmatis str. MC2 155 4537691 YP_885610.1 CDS MSMEG_1218 NC_008596.1 1287741 1288457 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1287741..1288457) Mycobacterium smegmatis str. MC2 155 4531121 YP_885611.1 CDS MSMEG_1219 NC_008596.1 1288454 1289461 R identified by match to protein family HMM PF02653; ABC transporter permease complement(1288454..1289461) Mycobacterium smegmatis str. MC2 155 4533020 YP_885612.1 CDS MSMEG_1220 NC_008596.1 1289458 1290333 R identified by match to protein family HMM PF02653; ABC transporter permease complement(1289458..1290333) Mycobacterium smegmatis str. MC2 155 4531202 YP_885613.1 CDS MSMEG_1221 NC_008596.1 1290581 1291009 D rifampin ADP-ribosyl transferase 1290581..1291009 Mycobacterium smegmatis str. MC2 155 4536862 YP_885614.1 CDS MSMEG_1222 NC_008596.1 1291202 1292839 R identified by similarity to GP:2935133; match to protein family HMM PF01609; ISMsm6, transposase complement(1291202..1292839) Mycobacterium smegmatis str. MC2 155 4537271 YP_885615.1 CDS MSMEG_1224 NC_008596.1 1292948 1293064 D rifampin ADP-ribosyl transferase 1292948..1293064 Mycobacterium smegmatis str. MC2 155 4535758 YP_885616.1 CDS MSMEG_1223 NC_008596.1 1293051 1293362 R hypothetical protein complement(1293051..1293362) Mycobacterium smegmatis str. MC2 155 4533813 YP_885617.1 CDS MSMEG_1225 NC_008596.1 1294590 1295882 R hypothetical protein complement(1294590..1295882) Mycobacterium smegmatis str. MC2 155 4531049 YP_885618.1 CDS MSMEG_1226 NC_008596.1 1295995 1296870 D identified by match to protein family HMM PF03781; sulfatase-modifying factor 1 1295995..1296870 Mycobacterium smegmatis str. MC2 155 4537219 YP_885619.1 CDS MSMEG_1227 NC_008596.1 1297094 1297819 D identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 1297094..1297819 Mycobacterium smegmatis str. MC2 155 4536870 YP_885620.1 CDS MSMEG_1228 NC_008596.1 1297882 1299234 D identified by match to protein family HMM PF00884; sulfatase 1297882..1299234 Mycobacterium smegmatis str. MC2 155 4536394 YP_885621.1 CDS gyrB NC_008596.1 1299255 1301174 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 1299255..1301174 Mycobacterium smegmatis str. MC2 155 4534526 YP_885622.1 CDS MSMEG_1230 NC_008596.1 1301175 1301498 R hypothetical protein complement(1301175..1301498) Mycobacterium smegmatis str. MC2 155 4537019 YP_885623.1 CDS MSMEG_1231 NC_008596.1 1301495 1301863 R identified by match to protein family HMM PF02656; inner membrane protein YidH complement(1301495..1301863) Mycobacterium smegmatis str. MC2 155 4533593 YP_885624.1 CDS MSMEG_1232 NC_008596.1 1302007 1303464 D ABC transporter substrate-binding protein 1302007..1303464 Mycobacterium smegmatis str. MC2 155 4532068 YP_885625.1 CDS MSMEG_1234 NC_008596.1 1304379 1305128 D identified by match to protein family HMM PF00005; taurine import ATP-binding protein TauB 1304379..1305128 Mycobacterium smegmatis str. MC2 155 4535630 YP_885626.1 CDS MSMEG_1235 NC_008596.1 1305154 1306650 D identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; sulfate permease 1305154..1306650 Mycobacterium smegmatis str. MC2 155 4531370 YP_885627.1 CDS MSMEG_1236 NC_008596.1 1306698 1307345 R Mpr protein complement(1306698..1307345) Mycobacterium smegmatis str. MC2 155 4535950 YP_885628.1 CDS MSMEG_1237 NC_008596.1 1307514 1307831 D hypothetical protein 1307514..1307831 Mycobacterium smegmatis str. MC2 155 4535774 YP_885629.1 CDS MSMEG_1238 NC_008596.1 1308315 1310015 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; type III restriction enzyme, res subunit 1308315..1310015 Mycobacterium smegmatis str. MC2 155 4533570 YP_885630.1 CDS MSMEG_1239 NC_008596.1 1310225 1311592 R identified by similarity to GP:150005; match to protein family HMM PF01610; ISMsm4, transposase complement(1310225..1311592) Mycobacterium smegmatis str. MC2 155 4533408 YP_885631.1 CDS MSMEG_1240 NC_008596.1 1311730 1313316 D hypothetical protein 1311730..1313316 Mycobacterium smegmatis str. MC2 155 4532124 YP_885632.1 CDS MSMEG_1241 NC_008596.1 1313313 1314251 D hypothetical protein 1313313..1314251 Mycobacterium smegmatis str. MC2 155 4531686 YP_885633.1 CDS iscS NC_008596.1 1314552 1315712 D identified by match to protein family HMM PF00266; cysteine desulfurase IscS 1314552..1315712 Mycobacterium smegmatis str. MC2 155 4536475 YP_885634.1 CDS MSMEG_1243 NC_008596.1 1315709 1316782 D hypothetical protein 1315709..1316782 Mycobacterium smegmatis str. MC2 155 4536449 YP_885635.1 CDS MSMEG_1244 NC_008596.1 1316779 1320237 D hypothetical protein 1316779..1320237 Mycobacterium smegmatis str. MC2 155 4533291 YP_885636.1 CDS MSMEG_1245 NC_008596.1 1320230 1321078 D identified by match to protein family HMM PF01507; phosphoadenosine phosphosulfate reductase 1320230..1321078 Mycobacterium smegmatis str. MC2 155 4532836 YP_885637.1 CDS MSMEG_1246 NC_008596.1 1321231 1322667 D hypothetical protein 1321231..1322667 Mycobacterium smegmatis str. MC2 155 4535412 YP_885638.1 CDS MSMEG_1247 NC_008596.1 1323156 1323980 D hypothetical protein 1323156..1323980 Mycobacterium smegmatis str. MC2 155 4535454 YP_885639.1 CDS MSMEG_1248 NC_008596.1 1324238 1324906 D hypothetical protein 1324238..1324906 Mycobacterium smegmatis str. MC2 155 4536622 YP_885640.1 CDS MSMEG_1249 NC_008596.1 1325180 1326046 R identified by similarity to GP:12484144; match to protein family HMM PF00665; ISMsm7, transposase orfB complement(1325180..1326046) Mycobacterium smegmatis str. MC2 155 4536978 YP_885641.1 CDS MSMEG_1250 NC_008596.1 1326043 1326339 R identified by similarity to GP:6572439; match to protein family HMM PF01527; ISMsm7, transposase orfA complement(1326043..1326339) Mycobacterium smegmatis str. MC2 155 4532572 YP_885642.1 CDS MSMEG_1251 NC_008596.1 1326988 1327353 D identified by match to protein family HMM PF05305; hypothetical protein 1326988..1327353 Mycobacterium smegmatis str. MC2 155 4536144 YP_885643.1 CDS MSMEG_1252 NC_008596.1 1327732 1333908 D hypothetical protein 1327732..1333908 Mycobacterium smegmatis str. MC2 155 4535282 YP_885644.1 CDS MSMEG_1253 NC_008596.1 1334462 1337860 D hypothetical protein 1334462..1337860 Mycobacterium smegmatis str. MC2 155 4534699 YP_885645.1 CDS MSMEG_1254 NC_008596.1 1337844 1342847 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase 1337844..1342847 Mycobacterium smegmatis str. MC2 155 4532854 YP_885646.1 CDS MSMEG_1255 NC_008596.1 1343125 1345338 D identified by match to protein family HMM PF00580; UvrD/REP helicase 1343125..1345338 Mycobacterium smegmatis str. MC2 155 4531644 YP_885647.1 CDS MSMEG_1256 NC_008596.1 1345348 1345767 D hypothetical protein 1345348..1345767 Mycobacterium smegmatis str. MC2 155 4532441 YP_885648.1 CDS MSMEG_1257 NC_008596.1 1346160 1346861 D identified by similarity to GP:150004; match to protein family HMM PF07929; IS1096, tnpR protein 1346160..1346861 Mycobacterium smegmatis str. MC2 155 4535017 YP_885649.1 CDS MSMEG_1258 NC_008596.1 1346869 1348191 R identified by similarity to GP:150005; match to protein family HMM PF01610; IS1096, tnpA protein complement(1346869..1348191) Mycobacterium smegmatis str. MC2 155 4536179 YP_885650.1 CDS MSMEG_1259 NC_008596.1 1347910 1348326 D hypothetical protein 1347910..1348326 Mycobacterium smegmatis str. MC2 155 4532481 YP_885651.1 CDS MSMEG_1260 NC_008596.1 1348648 1350015 R hypothetical protein complement(1348648..1350015) Mycobacterium smegmatis str. MC2 155 4537559 YP_885652.1 CDS MSMEG_1261 NC_008596.1 1350265 1351347 D hypothetical protein 1350265..1351347 Mycobacterium smegmatis str. MC2 155 4537504 YP_885653.1 CDS MSMEG_1262 NC_008596.1 1351351 1351716 D hypothetical protein 1351351..1351716 Mycobacterium smegmatis str. MC2 155 4535032 YP_885654.1 CDS MSMEG_1263 NC_008596.1 1352309 1352833 R hypothetical protein complement(1352309..1352833) Mycobacterium smegmatis str. MC2 155 4533321 YP_885655.1 CDS MSMEG_1264 NC_008596.1 1353580 1353978 D identified by match to protein family HMM PF07553; prophage Lp1 protein 5 1353580..1353978 Mycobacterium smegmatis str. MC2 155 4535410 YP_885656.1 CDS MSMEG_1265 NC_008596.1 1354095 1355633 R hypothetical protein complement(1354095..1355633) Mycobacterium smegmatis str. MC2 155 4533738 YP_885657.1 CDS MSMEG_1266 NC_008596.1 1355685 1356374 R ankyrin complement(1355685..1356374) Mycobacterium smegmatis str. MC2 155 4532855 YP_885658.1 CDS MSMEG_1268 NC_008596.1 1357886 1358554 D identified by match to protein family HMM PF00293; nudix hydrolase 1357886..1358554 Mycobacterium smegmatis str. MC2 155 4533130 YP_885659.1 CDS MSMEG_1269 NC_008596.1 1358568 1359566 R identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase complement(1358568..1359566) Mycobacterium smegmatis str. MC2 155 4537693 YP_885660.1 CDS MSMEG_1270 NC_008596.1 1359598 1359891 R hypothetical protein complement(1359598..1359891) Mycobacterium smegmatis str. MC2 155 4534298 YP_885661.1 CDS MSMEG_1271 NC_008596.1 1360010 1360372 R hypothetical protein complement(1360010..1360372) Mycobacterium smegmatis str. MC2 155 4531612 YP_885662.1 CDS MSMEG_1272 NC_008596.1 1360369 1361847 R identified by match to protein family HMM PF00782; match to protein family HMM PF03747; ribosylglycohydrolase complement(1360369..1361847) Mycobacterium smegmatis str. MC2 155 4533213 YP_885663.1 CDS MSMEG_1273 NC_008596.1 1362036 1362377 R identified by match to protein family HMM PF05305; hypothetical protein complement(1362036..1362377) Mycobacterium smegmatis str. MC2 155 4536730 YP_885664.1 CDS MSMEG_1274 NC_008596.1 1362437 1363564 R identified by match to protein family HMM PF03758; gluconolactonase complement(1362437..1363564) Mycobacterium smegmatis str. MC2 155 4531634 YP_885665.1 CDS MSMEG_1275 NC_008596.1 1363745 1364824 R HNH nuclease complement(1363745..1364824) Mycobacterium smegmatis str. MC2 155 4531600 YP_885666.1 CDS MSMEG_1276 NC_008596.1 1364892 1365188 D hypothetical protein 1364892..1365188 Mycobacterium smegmatis str. MC2 155 4533299 YP_885667.1 CDS MSMEG_1277 NC_008596.1 1365336 1365533 D hypothetical protein 1365336..1365533 Mycobacterium smegmatis str. MC2 155 4536481 YP_885668.1 CDS MSMEG_1278 NC_008596.1 1365530 1365922 D identified by match to protein family HMM PF05012; match to protein family HMM TIGR01550; death-on-curing protein 1365530..1365922 Mycobacterium smegmatis str. MC2 155 4532961 YP_885669.1 CDS MSMEG_1279 NC_008596.1 1365999 1367429 D hypothetical protein 1365999..1367429 Mycobacterium smegmatis str. MC2 155 4536858 YP_885670.1 CDS MSMEG_1280 NC_008596.1 1367426 1368148 D hypothetical protein 1367426..1368148 Mycobacterium smegmatis str. MC2 155 4531794 YP_885671.1 CDS MSMEG_1281 NC_008596.1 1368135 1371380 D hypothetical protein 1368135..1371380 Mycobacterium smegmatis str. MC2 155 4537499 YP_885672.1 CDS MSMEG_1282 NC_008596.1 1371377 1372546 D hypothetical protein 1371377..1372546 Mycobacterium smegmatis str. MC2 155 4534171 YP_885673.1 CDS MSMEG_1283 NC_008596.1 1372567 1372821 D identified by match to protein family HMM PF07704; ribbon-helix-helix transcription factor, family protein 1372567..1372821 Mycobacterium smegmatis str. MC2 155 4532613 YP_885674.1 CDS MSMEG_1284 NC_008596.1 1372821 1373210 D identified by match to protein family HMM PF01850; twitching motility protein PilT 1372821..1373210 Mycobacterium smegmatis str. MC2 155 4533588 YP_885675.1 CDS MSMEG_1285 NC_008596.1 1373229 1375634 R identified by match to protein family HMM PF02810; match to protein family HMM PF07721; hypothetical protein complement(1373229..1375634) Mycobacterium smegmatis str. MC2 155 4536628 YP_885676.1 CDS MSMEG_1286 NC_008596.1 1375656 1377416 R identified by match to protein family HMM PF00884; sulfatase complement(1375656..1377416) Mycobacterium smegmatis str. MC2 155 4535337 YP_885677.1 CDS MSMEG_1287 NC_008596.1 1377413 1377850 R similar to Streptomyces cyclase/dehydrase; identified by match to protein family HMM PF03364; cyclase/dehydrase complement(1377413..1377850) Mycobacterium smegmatis str. MC2 155 4534096 YP_885678.1 CDS MSMEG_1288 NC_008596.1 1378017 1379666 D hypothetical protein 1378017..1379666 Mycobacterium smegmatis str. MC2 155 4532228 YP_885679.1 CDS MSMEG_1289 NC_008596.1 1379677 1380480 R hypothetical protein complement(1379677..1380480) Mycobacterium smegmatis str. MC2 155 4535148 YP_885680.1 CDS ilvD NC_008596.1 1380557 1382425 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 1380557..1382425 Mycobacterium smegmatis str. MC2 155 4535696 YP_885681.1 CDS MSMEG_1291 NC_008596.1 1382428 1385109 R identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738; oxidoreductase complement(1382428..1385109) Mycobacterium smegmatis str. MC2 155 4533363 YP_885682.1 CDS MSMEG_1292 NC_008596.1 1385106 1385990 R identified by match to protein family HMM PF00941; FAD binding domain-containing protein complement(1385106..1385990) Mycobacterium smegmatis str. MC2 155 4535086 YP_885683.1 CDS MSMEG_1293 NC_008596.1 1386036 1387940 D identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; xanthine/uracil permeases family protein 1386036..1387940 Mycobacterium smegmatis str. MC2 155 4533807 YP_885684.1 CDS MSMEG_1294 NC_008596.1 1387942 1388448 D OHCU decarboxylase 1387942..1388448 Mycobacterium smegmatis str. MC2 155 4534289 YP_885685.1 CDS MSMEG_1295 NC_008596.1 1388445 1388762 D identified by match to protein family HMM PF00576; transthyretin 1388445..1388762 Mycobacterium smegmatis str. MC2 155 4532609 YP_885686.1 CDS MSMEG_1296 NC_008596.1 1388764 1389663 D identified by match to protein family HMM PF01014; uricase 1388764..1389663 Mycobacterium smegmatis str. MC2 155 4533903 YP_885687.1 CDS MSMEG_1297 NC_008596.1 1389680 1391038 D catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway.; hydroxydechloroatrazine ethylaminohydrolase 1389680..1391038 Mycobacterium smegmatis str. MC2 155 4531257 YP_885688.1 CDS MSMEG_1298 NC_008596.1 1391035 1392369 D identified by match to protein family HMM PF01979; match to protein family HMM PF07969; guanine deaminase 1391035..1392369 Mycobacterium smegmatis str. MC2 155 4531948 YP_885689.1 CDS MSMEG_1299 NC_008596.1 1392514 1393572 D identified by match to protein family HMM PF03171; oxidoreductase, 2OG-Fe(II) oxygenase 1392514..1393572 Mycobacterium smegmatis str. MC2 155 4533450 YP_885690.1 CDS MSMEG_1300 NC_008596.1 1393703 1394095 D hypothetical protein 1393703..1394095 Mycobacterium smegmatis str. MC2 155 4535319 YP_885691.1 CDS MSMEG_1301 NC_008596.1 1394284 1394544 D identified by match to protein family HMM PF00196; hypothetical protein 1394284..1394544 Mycobacterium smegmatis str. MC2 155 4535654 YP_885692.1 CDS MSMEG_1302 NC_008596.1 1394787 1394954 D alkylphosphonate uptake protein 1394787..1394954 Mycobacterium smegmatis str. MC2 155 4532849 YP_885693.1 CDS MSMEG_1303 NC_008596.1 1395326 1396144 R identified by match to protein family HMM PF01381; transcriptional regulator complement(1395326..1396144) Mycobacterium smegmatis str. MC2 155 4535243 YP_885694.1 CDS MSMEG_1304 NC_008596.1 1396275 1397318 D identified by match to protein family HMM PF00248; rhizopine catabolism protein 1396275..1397318 Mycobacterium smegmatis str. MC2 155 4533896 YP_885695.1 CDS MSMEG_1305 NC_008596.1 1397328 1397936 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(1397328..1397936) Mycobacterium smegmatis str. MC2 155 4536876 YP_885696.1 CDS MSMEG_1306 NC_008596.1 1398000 1399523 R identified by match to protein family HMM PF00171; aldehyde dehydrogenase complement(1398000..1399523) Mycobacterium smegmatis str. MC2 155 4532791 YP_885697.1 CDS MSMEG_1307 NC_008596.1 1399532 1399834 R identified by match to protein family HMM PF07110; match to protein family HMM TIGR02118; EthD protein complement(1399532..1399834) Mycobacterium smegmatis str. MC2 155 4531742 YP_885698.1 CDS MSMEG_1308 NC_008596.1 1399868 1401571 R identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976; peptidase S15 complement(1399868..1401571) Mycobacterium smegmatis str. MC2 155 4531358 YP_885699.1 CDS MSMEG_1309 NC_008596.1 1402155 1402271 D hypothetical protein 1402155..1402271 Mycobacterium smegmatis str. MC2 155 4533709 YP_885700.1 CDS MSMEG_1310 NC_008596.1 1402450 1403853 D identified by match to protein family HMM PF01609; TnpC protein 1402450..1403853 Mycobacterium smegmatis str. MC2 155 4535507 YP_885701.1 CDS MSMEG_1311 NC_008596.1 1404005 1405996 R identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728; match to protein family HMM TIGR00733; oligopeptide transporter OPT family protein complement(1404005..1405996) Mycobacterium smegmatis str. MC2 155 4532755 YP_885702.1 CDS MSMEG_1312 NC_008596.1 1406153 1406749 D hypothetical protein 1406153..1406749 Mycobacterium smegmatis str. MC2 155 4537643 YP_885703.1 CDS MSMEG_1313 NC_008596.1 1406859 1409201 D hypothetical protein 1406859..1409201 Mycobacterium smegmatis str. MC2 155 4534166 YP_885704.1 CDS MSMEG_1315 NC_008596.1 1409246 1410160 D identified by match to protein family HMM PF00924; transporter small conductance mechanosensitive ion channel (MscS) family protein 1409246..1410160 Mycobacterium smegmatis str. MC2 155 4533934 YP_885705.1 CDS MSMEG_1314 NC_008596.1 1410157 1410906 R hypothetical protein complement(1410157..1410906) Mycobacterium smegmatis str. MC2 155 4533801 YP_885706.1 CDS prfC NC_008596.1 1411176 1412792 R identified by match to protein family HMM PF00009; match to protein family HMM TIGR00231; match to protein family HMM TIGR00503; peptide chain release factor 3 complement(1411176..1412792) Mycobacterium smegmatis str. MC2 155 4536887 YP_885707.1 CDS MSMEG_1317 NC_008596.1 1413062 1413751 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; transcriptional regulator complement(1413062..1413751) Mycobacterium smegmatis str. MC2 155 4531960 YP_885708.1 CDS MSMEG_1318 NC_008596.1 1413803 1414714 R identified by match to protein family HMM PF01522; polysaccharide deacetylase complement(1413803..1414714) Mycobacterium smegmatis str. MC2 155 4531008 YP_885709.1 CDS MSMEG_1319 NC_008596.1 1414728 1415882 R identified by match to protein family HMM PF01177; Asp/Glu racemase complement(1414728..1415882) Mycobacterium smegmatis str. MC2 155 4533779 YP_885710.1 CDS MSMEG_1320 NC_008596.1 1415879 1417180 R identified by match to protein family HMM PF07690; major facilitator superfamily protein complement(1415879..1417180) Mycobacterium smegmatis str. MC2 155 4531435 YP_885711.1 CDS MSMEG_1321 NC_008596.1 1417321 1417941 D identified by match to protein family HMM PF01557; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 1417321..1417941 Mycobacterium smegmatis str. MC2 155 4534586 YP_885712.1 CDS MSMEG_1322 NC_008596.1 1418115 1419377 D identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 1418115..1419377 Mycobacterium smegmatis str. MC2 155 4531877 YP_885713.1 CDS MSMEG_1323 NC_008596.1 1419591 1419878 D hypothetical protein 1419591..1419878 Mycobacterium smegmatis str. MC2 155 4531272 YP_885714.1 CDS MSMEG_1324 NC_008596.1 1419914 1420030 R hypothetical protein complement(1419914..1420030) Mycobacterium smegmatis str. MC2 155 4536759 YP_885715.1 CDS MSMEG_1326 NC_008596.1 1420278 1420427 D hypothetical protein 1420278..1420427 Mycobacterium smegmatis str. MC2 155 4533893 YP_885716.1 CDS recD NC_008596.1 1420424 1422088 R identified by match to protein family HMM TIGR01447; exodeoxyribonuclease V subunit alpha complement(1420424..1422088) Mycobacterium smegmatis str. MC2 155 4534031 YP_885717.1 CDS recB NC_008596.1 1422085 1425336 R identified by match to protein family HMM PF00580; match to protein family HMM TIGR00609; exodeoxyribonuclease V subunit beta complement(1422085..1425336) Mycobacterium smegmatis str. MC2 155 4532889 YP_885718.1 CDS recC NC_008596.1 1425333 1428596 R identified by match to protein family HMM PF04257; match to protein family HMM TIGR01450; exodeoxyribonuclease V subunit gamma complement(1425333..1428596) Mycobacterium smegmatis str. MC2 155 4536343 YP_885719.1 CDS MSMEG_1329 NC_008596.1 1428614 1429858 R identified by match to protein family HMM PF05977; match to protein family HMM PF07690; major facilitator superfamily protein complement(1428614..1429858) Mycobacterium smegmatis str. MC2 155 4537528 YP_885720.1 CDS MSMEG_1330 NC_008596.1 1429855 1430313 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(1429855..1430313) Mycobacterium smegmatis str. MC2 155 4532993 YP_885721.1 CDS MSMEG_1331 NC_008596.1 1430426 1431133 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(1430426..1431133) Mycobacterium smegmatis str. MC2 155 4535374 YP_885722.1 CDS MSMEG_1332 NC_008596.1 1431151 1432008 R hypothetical protein complement(1431151..1432008) Mycobacterium smegmatis str. MC2 155 4537617 YP_885723.1 CDS MSMEG_1333 NC_008596.1 1432067 1433059 R hypothetical protein complement(1432067..1433059) Mycobacterium smegmatis str. MC2 155 4532463 YP_885724.1 CDS MSMEG_1334 NC_008596.1 1433302 1434039 R identified by match to protein family HMM PF00753; metallo-beta-lactamase complement(1433302..1434039) Mycobacterium smegmatis str. MC2 155 4533979 YP_885725.1 CDS MSMEG_1335 NC_008596.1 1434167 1434628 D identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; BadM/Rrf2 family transcriptional regulator 1434167..1434628 Mycobacterium smegmatis str. MC2 155 4532444 YP_885726.1 CDS MSMEG_1336 NC_008596.1 1434628 1435863 D identified by similarity to SP:P39662; match to protein family HMM PF00042; match to protein family HMM PF00175; match to protein family HMM PF00970; flavohemoprotein 1434628..1435863 Mycobacterium smegmatis str. MC2 155 4531071 YP_885727.1 CDS rpmG NC_008596.1 1436204 1436371 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 1436204..1436371 Mycobacterium smegmatis str. MC2 155 4532176 YP_885728.1 CDS MSMEG_1340 NC_008596.1 1436382 1436858 D functions as a heterodimer along with HadB in fatty acid biosynthesis; fatty acid synthase type II; FAS-II; (3R)-hydroxyacyl-ACP dehydratase subunit HadA 1436382..1436858 Mycobacterium smegmatis str. MC2 155 4531124 YP_885729.1 CDS MSMEG_1341 NC_008596.1 1436845 1437273 D functions as a heterodimer along with HadA or HadC in fatty acid biosynthesis; fatty acid synthase type II; FAS-II; (3R)-hydroxyacyl-ACP dehydratase subunit HadB 1436845..1437273 Mycobacterium smegmatis str. MC2 155 4536166 YP_885730.1 CDS MSMEG_1342 NC_008596.1 1437283 1437792 D functions as a heterodimer along with HadB in fatty acid biosynthesis; fatty acid synthase type II; FAS-II; (3R)-hydroxyacyl-ACP dehydratase subunit HadC 1437283..1437792 Mycobacterium smegmatis str. MC2 155 4534648 YP_885731.1 CDS secE NC_008596.1 1438122 1438556 D forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 1438122..1438556 Mycobacterium smegmatis str. MC2 155 4537670 YP_885732.1 CDS nusG NC_008596.1 1438583 1439425 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 1438583..1439425 Mycobacterium smegmatis str. MC2 155 4536004 YP_885733.1 CDS rplK NC_008596.1 1439493 1439921 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 1439493..1439921 Mycobacterium smegmatis str. MC2 155 4536970 YP_885734.1 CDS rplA NC_008596.1 1439987 1440694 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 1439987..1440694 Mycobacterium smegmatis str. MC2 155 4533313 YP_885735.1 CDS MSMEG_1348 NC_008596.1 1440768 1441997 R identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; RNA polymerase ECF-subfamily protein sigma factor complement(1440768..1441997) Mycobacterium smegmatis str. MC2 155 4532698 YP_885736.1 CDS MSMEG_1349 NC_008596.1 1442005 1442700 R identified by match to protein family HMM PF04946; DGPF domain-containing protein complement(1442005..1442700) Mycobacterium smegmatis str. MC2 155 4535414 YP_885737.1 CDS MSMEG_1350 NC_008596.1 1442825 1443685 R identified by match to protein family HMM PF02353; cyclopropane-fatty-acyl-phospholipid synthase complement(1442825..1443685) Mycobacterium smegmatis str. MC2 155 4533953 YP_885738.1 CDS MSMEG_1351 NC_008596.1 1443878 1444750 R identified by match to protein family HMM PF02353; cyclopropane-fatty-acyl-phospholipid synthase complement(1443878..1444750) Mycobacterium smegmatis str. MC2 155 4533043 YP_885739.1 CDS MSMEG_1352 NC_008596.1 1444930 1445847 R identified by match to protein family HMM PF00561; alpha/beta hydrolase complement(1444930..1445847) Mycobacterium smegmatis str. MC2 155 4534086 YP_885740.1 CDS MSMEG_1353 NC_008596.1 1445847 1447268 R identified by match to protein family HMM PF03109; ABC transporter complement(1445847..1447268) Mycobacterium smegmatis str. MC2 155 4536331 YP_885741.1 CDS MSMEG_1355 NC_008596.1 1448423 1449022 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1448423..1449022 Mycobacterium smegmatis str. MC2 155 4534517 YP_885742.1 CDS MSMEG_1356 NC_008596.1 1449027 1449638 R identified by match to protein family HMM PF04978; hypothetical protein complement(1449027..1449638) Mycobacterium smegmatis str. MC2 155 4535423 YP_885743.1 CDS MSMEG_1357 NC_008596.1 1449643 1450170 R hypothetical protein complement(1449643..1450170) Mycobacterium smegmatis str. MC2 155 4535222 YP_885744.1 CDS MSMEG_1359 NC_008596.1 1450233 1451195 D identified by match to protein family HMM PF02082; match to protein family HMM PF08220; DeoR family transcriptional regulator 1450233..1451195 Mycobacterium smegmatis str. MC2 155 4530903 YP_885745.1 CDS MSMEG_1358 NC_008596.1 1451188 1451748 R hypothetical protein complement(1451188..1451748) Mycobacterium smegmatis str. MC2 155 4533909 YP_885746.1 CDS MSMEG_1360 NC_008596.1 1451809 1452558 D identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase 1451809..1452558 Mycobacterium smegmatis str. MC2 155 4534050 YP_885747.1 CDS MSMEG_1361 NC_008596.1 1452576 1456718 D identified by match to protein family HMM PF01074; match to protein family HMM PF07748; alpha-mannosidase 1452576..1456718 Mycobacterium smegmatis str. MC2 155 4537270 YP_885748.1 CDS MSMEG_1362 NC_008596.1 1456715 1457314 D hypothetical protein 1456715..1457314 Mycobacterium smegmatis str. MC2 155 4534899 YP_885749.1 CDS MSMEG_1363 NC_008596.1 1457319 1458224 D identified by match to protein family HMM PF00480; glucokinase 1457319..1458224 Mycobacterium smegmatis str. MC2 155 4536988 YP_885750.1 CDS rplJ NC_008596.1 1458668 1459195 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 1458668..1459195 Mycobacterium smegmatis str. MC2 155 4531189 YP_885751.1 CDS rplL NC_008596.1 1459265 1459657 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 1459265..1459657 Mycobacterium smegmatis str. MC2 155 4535014 YP_885752.1 CDS MSMEG_1366 NC_008596.1 1459848 1460930 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1459848..1460930 Mycobacterium smegmatis str. MC2 155 4534624 YP_885753.1 CDS rpoB NC_008596.1 1461630 1465139 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; subunit beta is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 1461630..1465139 Mycobacterium smegmatis str. MC2 155 4535217 YP_885754.1 CDS rpoC NC_008596.1 1465203 1469156 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 1465203..1469156 Mycobacterium smegmatis str. MC2 155 4532832 YP_885755.1 CDS MSMEG_1369 NC_008596.1 1469221 1470270 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; LacI family transcriptional regulator complement(1469221..1470270) Mycobacterium smegmatis str. MC2 155 4532865 YP_885756.1 CDS MSMEG_1370 NC_008596.1 1470431 1471456 D identified by match to protein family HMM PF00107; 2-deoxy-scyllo-inosamine dehydrogenase 1470431..1471456 Mycobacterium smegmatis str. MC2 155 4534827 YP_885757.1 CDS MSMEG_1371 NC_008596.1 1471453 1472454 D hypothetical protein 1471453..1472454 Mycobacterium smegmatis str. MC2 155 4535262 YP_885758.1 CDS MSMEG_1372 NC_008596.1 1472465 1473223 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1472465..1473223 Mycobacterium smegmatis str. MC2 155 4532057 YP_885759.1 CDS MSMEG_1373 NC_008596.1 1473220 1474338 D identified by match to protein family HMM PF02653; ribose/xylose/arabinose/galactoside ABC-type transport systems, permeases 1473220..1474338 Mycobacterium smegmatis str. MC2 155 4533467 YP_885760.1 CDS MSMEG_1374 NC_008596.1 1474328 1475374 D identified by match to protein family HMM PF00532; ribose ABC transporter periplasmic binding protein 1474328..1475374 Mycobacterium smegmatis str. MC2 155 4532217 YP_885761.1 CDS MSMEG_1375 NC_008596.1 1475387 1476229 R identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; tagatose-1,6-bisphosphate aldolase GatY complement(1475387..1476229) Mycobacterium smegmatis str. MC2 155 4536333 YP_885762.1 CDS MSMEG_1376 NC_008596.1 1476315 1477562 D identified by match to protein family HMM PF00370; xylulose kinase 1476315..1477562 Mycobacterium smegmatis str. MC2 155 4536299 YP_885763.1 CDS MSMEG_1377 NC_008596.1 1477559 1478347 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; DeoR family transcriptional regulator 1477559..1478347 Mycobacterium smegmatis str. MC2 155 4535612 YP_885764.1 CDS MSMEG_1378 NC_008596.1 1478344 1479261 D identified by match to protein family HMM PF00294; 1-phosphofructokinase 1478344..1479261 Mycobacterium smegmatis str. MC2 155 4534626 YP_885765.1 CDS MSMEG_1379 NC_008596.1 1479288 1480475 D identified by similarity to SP:P37339; match to protein family HMM PF01266; hypothetical protein 1479288..1480475 Mycobacterium smegmatis str. MC2 155 4537701 YP_885766.1 CDS MSMEG_1380 NC_008596.1 1480902 1481606 R identified by match to protein family HMM PF00440; transcriptional regulator complement(1480902..1481606) Mycobacterium smegmatis str. MC2 155 4536796 YP_885767.1 CDS MSMEG_1381 NC_008596.1 1481785 1482201 D identified by match to protein family HMM PF05423; MmpS5 protein 1481785..1482201 Mycobacterium smegmatis str. MC2 155 4534563 YP_885768.1 CDS MSMEG_1382 NC_008596.1 1482198 1485101 D identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833; MmpL5 protein 1482198..1485101 Mycobacterium smegmatis str. MC2 155 4531326 YP_885769.1 CDS MSMEG_1383 NC_008596.1 1485148 1485900 D Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 1485148..1485900 Mycobacterium smegmatis str. MC2 155 4535595 YP_885770.1 CDS MSMEG_1385 NC_008596.1 1485994 1487205 D identified by match to protein family HMM PF01569; PAP2 superfamily protein 1485994..1487205 Mycobacterium smegmatis str. MC2 155 4531426 YP_885771.1 CDS MSMEG_1384 NC_008596.1 1487074 1487475 R identified by match to protein family HMM PF05899; hypothetical protein complement(1487074..1487475) Mycobacterium smegmatis str. MC2 155 4535831 YP_885772.1 CDS MSMEG_1386 NC_008596.1 1487534 1488700 D hypothetical protein 1487534..1488700 Mycobacterium smegmatis str. MC2 155 4534168 YP_885773.1 CDS MSMEG_1387 NC_008596.1 1488754 1490409 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase 1488754..1490409 Mycobacterium smegmatis str. MC2 155 4531680 YP_885774.1 CDS MSMEG_1388 NC_008596.1 1490456 1491394 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1490456..1491394 Mycobacterium smegmatis str. MC2 155 4533033 YP_885775.1 CDS MSMEG_1389 NC_008596.1 1491401 1492138 D identified by match to protein family HMM PF07848; match to protein family HMM PF08223; hypothetical protein 1491401..1492138 Mycobacterium smegmatis str. MC2 155 4535659 YP_885776.1 CDS MSMEG_1390 NC_008596.1 1492135 1492899 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1492135..1492899 Mycobacterium smegmatis str. MC2 155 4531390 YP_885777.1 CDS MSMEG_1391 NC_008596.1 1492993 1493892 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(1492993..1493892) Mycobacterium smegmatis str. MC2 155 4532910 YP_885778.1 CDS MSMEG_1392 NC_008596.1 1494011 1495168 D identified by match to protein family HMM PF00465; alcohol dehydrogenase 1494011..1495168 Mycobacterium smegmatis str. MC2 155 4534538 YP_885779.1 CDS MSMEG_1393 NC_008596.1 1495173 1495583 R hypothetical protein complement(1495173..1495583) Mycobacterium smegmatis str. MC2 155 4533592 YP_885780.1 CDS MSMEG_1394 NC_008596.1 1495614 1495991 R transmembrane protein complement(1495614..1495991) Mycobacterium smegmatis str. MC2 155 4537052 YP_885781.1 CDS MSMEG_1395 NC_008596.1 1496172 1496753 D lipoprotein 1496172..1496753 Mycobacterium smegmatis str. MC2 155 4534169 YP_885782.1 CDS MSMEG_1396 NC_008596.1 1496756 1497277 D LprB protein 1496756..1497277 Mycobacterium smegmatis str. MC2 155 4533991 YP_885783.1 CDS MSMEG_1397 NC_008596.1 1497443 1498018 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1497443..1498018 Mycobacterium smegmatis str. MC2 155 4531959 YP_885784.1 CDS rpsL NC_008596.1 1498302 1498676 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 1498302..1498676 Mycobacterium smegmatis str. MC2 155 4534642 YP_885785.1 CDS rpsG NC_008596.1 1498676 1499146 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 1498676..1499146 Mycobacterium smegmatis str. MC2 155 4535400 YP_885786.1 CDS tuf NC_008596.1 1501413 1502603 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1501413..1502603 Mycobacterium smegmatis str. MC2 155 4537531 YP_885787.1 CDS MSMEG_1402 NC_008596.1 1502841 1503758 D hypothetical protein 1502841..1503758 Mycobacterium smegmatis str. MC2 155 4535231 YP_885788.1 CDS MSMEG_1403 NC_008596.1 1503848 1504765 D identified by match to protein family HMM PF01083; cutinase 1503848..1504765 Mycobacterium smegmatis str. MC2 155 4533407 YP_885789.1 CDS MSMEG_1404 NC_008596.1 1504930 1506252 D identified by similarity to GP:150005; match to protein family HMM PF01610; IS1096, tnpA protein 1504930..1506252 Mycobacterium smegmatis str. MC2 155 4532983 YP_885790.1 CDS MSMEG_1405 NC_008596.1 1506260 1506961 R identified by similarity to GP:150004; match to protein family HMM PF07929; IS1096, tnpR protein complement(1506260..1506961) Mycobacterium smegmatis str. MC2 155 4534082 YP_885791.1 CDS MSMEG_1406 NC_008596.1 1507065 1507916 D hypothetical protein 1507065..1507916 Mycobacterium smegmatis str. MC2 155 4534010 YP_885792.1 CDS arcA NC_008596.1 1510936 1512213 D catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 1510936..1512213 Mycobacterium smegmatis str. MC2 155 4537424 YP_885793.1 CDS fabG NC_008596.1 1512243 1513094 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1512243..1513094 Mycobacterium smegmatis str. MC2 155 4531750 YP_885794.1 CDS MSMEG_1411 NC_008596.1 1513135 1514016 R identified by match to protein family HMM PF00582; universal stress protein family protein complement(1513135..1514016) Mycobacterium smegmatis str. MC2 155 4531538 YP_885795.1 CDS MSMEG_1412 NC_008596.1 1514075 1515580 R identified by match to protein family HMM PF00324; match to protein family HMM PF01490; amino acid permease complement(1514075..1515580) Mycobacterium smegmatis str. MC2 155 4532603 YP_885796.1 CDS rocD NC_008596.1 1515608 1516876 R identified by match to protein family HMM PF00202; match to protein family HMM TIGR01885; ornithine--oxo-acid transaminase complement(1515608..1516876) Mycobacterium smegmatis str. MC2 155 4536016 YP_885797.1 CDS MSMEG_1414 NC_008596.1 1516873 1517760 R identified by match to protein family HMM PF02274; amidinotransferase complement(1516873..1517760) Mycobacterium smegmatis str. MC2 155 4530861 YP_885798.1 CDS MSMEG_1415 NC_008596.1 1517874 1518320 D identified by match to protein family HMM PF01037; AsnC family transcriptional regulator 1517874..1518320 Mycobacterium smegmatis str. MC2 155 4535749 YP_885799.1 CDS MSMEG_1416 NC_008596.1 1518390 1519577 D identified by match to protein family HMM PF00070; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 1518390..1519577 Mycobacterium smegmatis str. MC2 155 4532917 YP_885800.1 CDS MSMEG_1417 NC_008596.1 1519642 1520925 R identified by match to protein family HMM PF00903; glyoxalase complement(1519642..1520925) Mycobacterium smegmatis str. MC2 155 4532296 YP_885801.1 CDS MSMEG_1418 NC_008596.1 1520922 1521446 R identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; RNA polymerase ECF-type sigma factor complement(1520922..1521446) Mycobacterium smegmatis str. MC2 155 4533431 YP_885802.1 CDS MSMEG_1419 NC_008596.1 1521559 1522269 D hypothetical protein 1521559..1522269 Mycobacterium smegmatis str. MC2 155 4536003 YP_885803.1 CDS MSMEG_1420 NC_008596.1 1522270 1522872 R identified by match to protein family HMM PF00440; transcriptional regulatory protein complement(1522270..1522872) Mycobacterium smegmatis str. MC2 155 4537452 YP_885804.1 CDS MSMEG_1421 NC_008596.1 1522905 1523063 D hypothetical protein 1522905..1523063 Mycobacterium smegmatis str. MC2 155 4534613 YP_885805.1 CDS MSMEG_1422 NC_008596.1 1523066 1523374 D hypothetical protein 1523066..1523374 Mycobacterium smegmatis str. MC2 155 4534382 YP_885806.1 CDS MSMEG_1423 NC_008596.1 1523371 1524549 D identified by match to protein family HMM PF04055; radical SAM domain-containing protein 1523371..1524549 Mycobacterium smegmatis str. MC2 155 4537190 YP_885807.1 CDS MSMEG_1424 NC_008596.1 1524546 1525745 D identified by match to protein family HMM PF01070; FMN-dependent dehydrogenase 1524546..1525745 Mycobacterium smegmatis str. MC2 155 4536576 YP_885808.1 CDS MSMEG_1425 NC_008596.1 1525942 1526610 D identified by match to protein family HMM PF02633; creatininase subfamily protein 1525942..1526610 Mycobacterium smegmatis str. MC2 155 4535597 YP_885809.1 CDS MSMEG_1426 NC_008596.1 1526607 1528019 D identified by match to protein family HMM PF00535; membrane sugar transferase 1526607..1528019 Mycobacterium smegmatis str. MC2 155 4535570 YP_885810.1 CDS MSMEG_1428 NC_008596.1 1528038 1529444 D identified by match to protein family HMM PF00732; match to protein family HMM PF05199; glucose-methanol-choline oxidoreductase 1528038..1529444 Mycobacterium smegmatis str. MC2 155 4531188 YP_885811.1 CDS MSMEG_1427 NC_008596.1 1529431 1531005 R identified by match to protein family HMM PF07690; transmembrane efflux protein complement(1529431..1531005) Mycobacterium smegmatis str. MC2 155 4534870 YP_885812.1 CDS MSMEG_1430 NC_008596.1 1531094 1531729 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1531094..1531729 Mycobacterium smegmatis str. MC2 155 4536935 YP_885813.1 CDS MSMEG_1429 NC_008596.1 1531695 1532945 R identified by match to protein family HMM PF00067; cytochrome P450-terp complement(1531695..1532945) Mycobacterium smegmatis str. MC2 155 4534718 YP_885814.1 CDS MSMEG_1431 NC_008596.1 1533049 1534344 R identified by match to protein family HMM PF00067; cytochrome P450-terp complement(1533049..1534344) Mycobacterium smegmatis str. MC2 155 4537684 YP_885815.1 CDS MSMEG_1432 NC_008596.1 1534440 1536026 D identified by match to protein family HMM PF00135; acetylcholinesterase 1534440..1536026 Mycobacterium smegmatis str. MC2 155 4531225 YP_885816.1 CDS MSMEG_1434 NC_008596.1 1536028 1536393 D hypothetical protein 1536028..1536393 Mycobacterium smegmatis str. MC2 155 4533290 YP_885817.1 CDS MSMEG_1433 NC_008596.1 1536329 1537144 R thioesterase complement(1536329..1537144) Mycobacterium smegmatis str. MC2 155 4535470 YP_885818.1 CDS rpsJ NC_008596.1 1537276 1537581 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 1537276..1537581 Mycobacterium smegmatis str. MC2 155 4534901 YP_885819.1 CDS rplC NC_008596.1 1537596 1538249 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 1537596..1538249 Mycobacterium smegmatis str. MC2 155 4533307 YP_885820.1 CDS rplD NC_008596.1 1538249 1538896 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 1538249..1538896 Mycobacterium smegmatis str. MC2 155 4532963 YP_885821.1 CDS rplW NC_008596.1 1538896 1539198 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 1538896..1539198 Mycobacterium smegmatis str. MC2 155 4533062 YP_885822.1 CDS rplB NC_008596.1 1539223 1540059 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 1539223..1540059 Mycobacterium smegmatis str. MC2 155 4531572 YP_885823.1 CDS rpsS NC_008596.1 1540081 1540362 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 1540081..1540362 Mycobacterium smegmatis str. MC2 155 4534380 YP_885824.1 CDS rplV NC_008596.1 1540359 1540820 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 1540359..1540820 Mycobacterium smegmatis str. MC2 155 4535328 YP_885825.1 CDS rpsC NC_008596.1 1540820 1541647 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 1540820..1541647 Mycobacterium smegmatis str. MC2 155 4532601 YP_885826.1 CDS rplP NC_008596.1 1541650 1542066 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 1541650..1542066 Mycobacterium smegmatis str. MC2 155 4536702 YP_885827.1 CDS rpmC NC_008596.1 1542066 1542299 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 1542066..1542299 Mycobacterium smegmatis str. MC2 155 4534647 YP_885828.1 CDS MSMEG_1445 NC_008596.1 1542299 1542595 D identified by match to protein family HMM PF00366; 30S ribosomal protein S17 1542299..1542595 Mycobacterium smegmatis str. MC2 155 4530813 YP_885829.1 CDS MSMEG_1446 NC_008596.1 1542699 1543220 D identified by match to protein family HMM PF00293; NTP pyrophosphohydrolase 1542699..1543220 Mycobacterium smegmatis str. MC2 155 4535728 YP_885830.1 CDS MSMEG_1447 NC_008596.1 1543239 1543640 R identified by match to protein family HMM PF00376; MerR family transcriptional regulator complement(1543239..1543640) Mycobacterium smegmatis str. MC2 155 4537047 YP_885831.1 CDS MSMEG_1448 NC_008596.1 1543640 1545139 R identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; integral membrane transporter complement(1543640..1545139) Mycobacterium smegmatis str. MC2 155 4535643 YP_885832.1 CDS MSMEG_1450 NC_008596.1 1546037 1546177 D hypothetical protein 1546037..1546177 Mycobacterium smegmatis str. MC2 155 4537614 YP_885833.1 CDS MSMEG_1451 NC_008596.1 1546230 1548581 D identified by match to protein family HMM PF00884; arylsulfatase 1546230..1548581 Mycobacterium smegmatis str. MC2 155 4531764 YP_885834.1 CDS MSMEG_1452 NC_008596.1 1548624 1549514 D identified by match to protein family HMM PF03781; sulfatase-modifying factor 1 1548624..1549514 Mycobacterium smegmatis str. MC2 155 4532337 YP_885835.1 CDS MSMEG_1453 NC_008596.1 1549538 1551166 R identified by match to protein family HMM PF03600; citrate transporter complement(1549538..1551166) Mycobacterium smegmatis str. MC2 155 4535789 YP_885836.1 CDS MSMEG_1454 NC_008596.1 1551217 1551333 D hypothetical protein 1551217..1551333 Mycobacterium smegmatis str. MC2 155 4533847 YP_885837.1 CDS MSMEG_1455 NC_008596.1 1551538 1552914 D identified by match to protein family HMM PF07690; multidrug resistance protein 1551538..1552914 Mycobacterium smegmatis str. MC2 155 4537356 YP_885838.1 CDS MSMEG_1456 NC_008596.1 1552915 1554600 R hypothetical protein complement(1552915..1554600) Mycobacterium smegmatis str. MC2 155 4537058 YP_885839.1 CDS MSMEG_1457 NC_008596.1 1554800 1555246 D identified by match to protein family HMM PF03928; hypothetical protein 1554800..1555246 Mycobacterium smegmatis str. MC2 155 4532439 YP_885840.1 CDS MSMEG_1458 NC_008596.1 1555365 1556084 D identified by match to protein family HMM PF03070; tena/thi-4 family protein 1555365..1556084 Mycobacterium smegmatis str. MC2 155 4535591 YP_885841.1 CDS MSMEG_1459 NC_008596.1 1556130 1556480 D identified by match to protein family HMM PF00355; Rieske (2Fe-2S) domain-containing protein 1556130..1556480 Mycobacterium smegmatis str. MC2 155 4533820 YP_885842.1 CDS MSMEG_1460 NC_008596.1 1556477 1557703 D identified by match to protein family HMM PF00070; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 1556477..1557703 Mycobacterium smegmatis str. MC2 155 4535867 YP_885843.1 CDS MSMEG_1461 NC_008596.1 1557700 1559142 D identified by match to protein family HMM PF00171; 5-oxovalerate dehydrogenase 1557700..1559142 Mycobacterium smegmatis str. MC2 155 4536981 YP_885844.1 CDS MSMEG_1462 NC_008596.1 1559157 1559510 D identified by match to protein family HMM PF00355; ferredoxin 1559157..1559510 Mycobacterium smegmatis str. MC2 155 4533995 YP_885845.1 CDS MSMEG_1463 NC_008596.1 1559507 1561111 D identified by match to protein family HMM PF01019; gamma-glutamyltranspeptidase 1559507..1561111 Mycobacterium smegmatis str. MC2 155 4530959 YP_885846.1 CDS MSMEG_1464 NC_008596.1 1561101 1561595 D identified by match to protein family HMM PF01042; translation initiation inhibitor 1561101..1561595 Mycobacterium smegmatis str. MC2 155 4533048 YP_885847.1 CDS rplN NC_008596.1 1561939 1562307 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 1561939..1562307 Mycobacterium smegmatis str. MC2 155 4533916 YP_885848.1 CDS rplX NC_008596.1 1562308 1562625 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 1562308..1562625 Mycobacterium smegmatis str. MC2 155 4534528 YP_885849.1 CDS rplE NC_008596.1 1562625 1563188 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 1562625..1563188 Mycobacterium smegmatis str. MC2 155 4533769 YP_885850.1 CDS rpsN NC_008596.1 1563192 1563377 D identified by match to protein family HMM PF00253; 30S ribosomal protein S14 1563192..1563377 Mycobacterium smegmatis str. MC2 155 4533957 YP_885851.1 CDS rpsH NC_008596.1 1563476 1563874 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 1563476..1563874 Mycobacterium smegmatis str. MC2 155 4536927 YP_885852.1 CDS rplF NC_008596.1 1563889 1564428 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 1563889..1564428 Mycobacterium smegmatis str. MC2 155 4536743 YP_885853.1 CDS rplR NC_008596.1 1564456 1564839 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 1564456..1564839 Mycobacterium smegmatis str. MC2 155 4536282 YP_885854.1 CDS rpsE NC_008596.1 1564865 1565509 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 1564865..1565509 Mycobacterium smegmatis str. MC2 155 4535051 YP_885855.1 CDS rpmD NC_008596.1 1565512 1565697 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 1565512..1565697 Mycobacterium smegmatis str. MC2 155 4536920 YP_885856.1 CDS rplO NC_008596.1 1565694 1566137 D late assembly protein; 50S ribosomal protein L15 1565694..1566137 Mycobacterium smegmatis str. MC2 155 4533943 YP_885857.1 CDS MSMEG_1475 NC_008596.1 1566207 1567187 R identified by match to protein family HMM PF00296; hypothetical protein complement(1566207..1567187) Mycobacterium smegmatis str. MC2 155 4531968 YP_885858.1 CDS sppA NC_008596.1 1567306 1569090 D identified by match to protein family HMM PF01343; match to protein family HMM TIGR00705; match to protein family HMM TIGR00706; signal peptide peptidase SppA, 67K type 1567306..1569090 Mycobacterium smegmatis str. MC2 155 4534204 YP_885859.1 CDS MSMEG_1477 NC_008596.1 1569316 1570743 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator superfamily protein 1569316..1570743 Mycobacterium smegmatis str. MC2 155 4533538 YP_885860.1 CDS MSMEG_1478 NC_008596.1 1570776 1571426 D identified by match to protein family HMM PF01810; transporter LysE family protein 1570776..1571426 Mycobacterium smegmatis str. MC2 155 4535145 YP_885861.1 CDS MSMEG_1479 NC_008596.1 1571431 1572342 R identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027; methyltransferase, , family protein complement(1571431..1572342) Mycobacterium smegmatis str. MC2 155 4533360 YP_885862.1 CDS MSMEG_1480 NC_008596.1 1572351 1573247 R identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027; methyltransferase complement(1572351..1573247) Mycobacterium smegmatis str. MC2 155 4535876 YP_885863.1 CDS MSMEG_1481 NC_008596.1 1573257 1574171 R identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027; methyltransferase complement(1573257..1574171) Mycobacterium smegmatis str. MC2 155 4531830 YP_885864.1 CDS MSMEG_1482 NC_008596.1 1574178 1575092 R identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027; methyltransferase complement(1574178..1575092) Mycobacterium smegmatis str. MC2 155 4534260 YP_885865.1 CDS secY NC_008596.1 1575442 1576767 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 1575442..1576767 Mycobacterium smegmatis str. MC2 155 4533867 YP_885866.1 CDS adk NC_008596.1 1576764 1577309 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1576764..1577309 Mycobacterium smegmatis str. MC2 155 4531206 YP_885867.1 CDS map NC_008596.1 1577329 1578126 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 1577329..1578126 Mycobacterium smegmatis str. MC2 155 4534802 YP_885868.1 CDS MSMEG_1486 NC_008596.1 1578235 1578777 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in M. tuberculosis this protein regulates polyketide synthases and secreted or membrane proteins; RNA polymerase sigma factor SigL 1578235..1578777 Mycobacterium smegmatis str. MC2 155 4535405 YP_885869.1 CDS MSMEG_1487 NC_008596.1 1578774 1579505 D hypothetical protein 1578774..1579505 Mycobacterium smegmatis str. MC2 155 4532457 YP_885870.1 CDS MSMEG_1488 NC_008596.1 1579678 1581408 D identified by match to protein family HMM PF02775; match to protein family HMM PF02776; acetolactate synthase 1579678..1581408 Mycobacterium smegmatis str. MC2 155 4531595 YP_885871.1 CDS MSMEG_1489 NC_008596.1 1581389 1582069 D hypothetical protein 1581389..1582069 Mycobacterium smegmatis str. MC2 155 4533973 YP_885872.1 CDS MSMEG_1490 NC_008596.1 1582078 1583100 D 3-oxoacyl-ACP synthase 1582078..1583100 Mycobacterium smegmatis str. MC2 155 4534445 YP_885873.1 CDS MSMEG_1491 NC_008596.1 1583124 1584137 D identified by match to protein family HMM PF00155; histidinol-phosphate aminotransferase 2 1583124..1584137 Mycobacterium smegmatis str. MC2 155 4535523 YP_885874.1 CDS MSMEG_1492 NC_008596.1 1584173 1584694 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1584173..1584694 Mycobacterium smegmatis str. MC2 155 4537252 YP_885875.1 CDS MSMEG_1493 NC_008596.1 1584746 1585987 R identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730; sensor histidine kinase complement(1584746..1585987) Mycobacterium smegmatis str. MC2 155 4536424 YP_885876.1 CDS MSMEG_1494 NC_008596.1 1585984 1586646 R identified by match to protein family HMM PF00072; match to protein family HMM PF00196; transcriptional regulatory protein DegU complement(1585984..1586646) Mycobacterium smegmatis str. MC2 155 4536098 YP_885877.1 CDS MSMEG_1495 NC_008596.1 1586745 1587569 D identified by match to protein family HMM PF00702; HAD-superfamily hydrolase 1586745..1587569 Mycobacterium smegmatis str. MC2 155 4531442 YP_885878.1 CDS mmsB NC_008596.1 1587649 1588521 R identified by match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR01692; 3-hydroxyisobutyrate dehydrogenase complement(1587649..1588521) Mycobacterium smegmatis str. MC2 155 4532534 YP_885879.1 CDS MSMEG_1497 NC_008596.1 1588538 1589725 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(1588538..1589725) Mycobacterium smegmatis str. MC2 155 4533723 YP_885880.1 CDS mmsA NC_008596.1 1589732 1591252 R identified by similarity to GB:AAA99190.1; match to protein family HMM PF00171; match to protein family HMM TIGR01722; methylmalonate-semialdehyde dehydrogenase complement(1589732..1591252) Mycobacterium smegmatis str. MC2 155 4535218 YP_885881.1 CDS MSMEG_1499 NC_008596.1 1591424 1592929 D identified by match to protein family HMM PF01266; match to protein family HMM PF01494; oxygenase 1591424..1592929 Mycobacterium smegmatis str. MC2 155 4536679 YP_885882.1 CDS MSMEG_1500 NC_008596.1 1592926 1593525 D identified by match to protein family HMM PF00440; match to protein family HMM PF02796; TetR family transcriptional regulator 1592926..1593525 Mycobacterium smegmatis str. MC2 155 4535875 YP_885883.1 CDS MSMEG_1501 NC_008596.1 1593619 1594473 D identified by match to protein family HMM TIGR00027; methyltransferase, , family protein 1593619..1594473 Mycobacterium smegmatis str. MC2 155 4536078 YP_885884.1 CDS MSMEG_1502 NC_008596.1 1594527 1595402 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1594527..1595402 Mycobacterium smegmatis str. MC2 155 4536185 YP_885885.1 CDS MSMEG_1503 NC_008596.1 1595399 1596112 D antibiotic ABC transporter transmembrane protein 1595399..1596112 Mycobacterium smegmatis str. MC2 155 4534611 YP_885886.1 CDS MSMEG_1504 NC_008596.1 1596109 1596867 D antibiotic ABC transporter transmembrane protein 1596109..1596867 Mycobacterium smegmatis str. MC2 155 4532407 YP_885887.1 CDS MSMEG_1505 NC_008596.1 1596886 1597764 R identified by match to protein family HMM PF00892; integral membrane protein complement(1596886..1597764) Mycobacterium smegmatis str. MC2 155 4530956 YP_885888.1 CDS MSMEG_1506 NC_008596.1 1597761 1598429 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(1597761..1598429) Mycobacterium smegmatis str. MC2 155 4534099 YP_885889.1 CDS MSMEG_1507 NC_008596.1 1598476 1599585 D identified by match to protein family HMM PF03576; D-aminopeptidase 1598476..1599585 Mycobacterium smegmatis str. MC2 155 4536300 YP_885890.1 CDS MSMEG_1508 NC_008596.1 1599585 1601009 D identified by match to protein family HMM PF00324; amino acid permease 1599585..1601009 Mycobacterium smegmatis str. MC2 155 4535727 YP_885891.1 CDS MSMEG_1509 NC_008596.1 1601016 1601612 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(1601016..1601612) Mycobacterium smegmatis str. MC2 155 4537093 YP_885892.1 CDS MSMEG_1511 NC_008596.1 1601665 1602363 D identified by match to protein family HMM PF00881; oxidoreductase 1601665..1602363 Mycobacterium smegmatis str. MC2 155 4531570 YP_885893.1 CDS MSMEG_1510 NC_008596.1 1602360 1602965 R identified by match to protein family HMM PF00908; dTDP-4-dehydrorhamnose 3,5-epimerase complement(1602360..1602965) Mycobacterium smegmatis str. MC2 155 4537242 YP_885894.1 CDS rfbB NC_008596.1 1602962 1603957 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; dTDP-glucose 4,6-dehydratase complement(1602962..1603957) Mycobacterium smegmatis str. MC2 155 4531259 YP_885895.1 CDS MSMEG_1513 NC_008596.1 1603984 1604835 R hypothetical protein complement(1603984..1604835) Mycobacterium smegmatis str. MC2 155 4531417 YP_885896.1 CDS MSMEG_1514 NC_008596.1 1604864 1605760 R hypothetical protein complement(1604864..1605760) Mycobacterium smegmatis str. MC2 155 4534223 YP_885897.1 CDS MSMEG_1515 NC_008596.1 1605862 1607334 R identified by match to protein family HMM PF00027; match to protein family HMM PF02518; two-component sensor histidine kinase complement(1605862..1607334) Mycobacterium smegmatis str. MC2 155 4532754 YP_885898.1 CDS MSMEG_1516 NC_008596.1 1607344 1609002 R identified by match to protein family HMM PF00070; match to protein family HMM PF00072; match to protein family HMM PF01266; match to protein family HMM PF07992; thioredoxin reductase complement(1607344..1609002) Mycobacterium smegmatis str. MC2 155 4537177 YP_885899.1 CDS MSMEG_1517 NC_008596.1 1609139 1610719 R identified by match to protein family HMM PF01145; hypothetical protein complement(1609139..1610719) Mycobacterium smegmatis str. MC2 155 4531368 YP_885900.1 CDS MSMEG_1518 NC_008596.1 1610744 1611241 R hypothetical protein complement(1610744..1611241) Mycobacterium smegmatis str. MC2 155 4537702 YP_885901.1 CDS infA NC_008596.1 1611597 1611818 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1611597..1611818 Mycobacterium smegmatis str. MC2 155 4532676 YP_885902.1 CDS rpmJ NC_008596.1 1611901 1612014 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 1611901..1612014 Mycobacterium smegmatis str. MC2 155 4537408 YP_885903.1 CDS rpsM NC_008596.1 1612201 1612575 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 1612201..1612575 Mycobacterium smegmatis str. MC2 155 4531431 YP_885904.1 CDS rpsK NC_008596.1 1612581 1612997 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 1612581..1612997 Mycobacterium smegmatis str. MC2 155 4536043 YP_885905.1 CDS rpsD NC_008596.1 1613023 1613628 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1613023..1613628 Mycobacterium smegmatis str. MC2 155 4533059 YP_885906.1 CDS rpoA NC_008596.1 1613721 1614773 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 1613721..1614773 Mycobacterium smegmatis str. MC2 155 4537502 YP_885907.1 CDS MSMEG_1525 NC_008596.1 1614848 1615447 D identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059; 50S ribosomal protein L17 1614848..1615447 Mycobacterium smegmatis str. MC2 155 4534875 YP_885908.1 CDS truA NC_008596.1 1615467 1616342 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1615467..1616342 Mycobacterium smegmatis str. MC2 155 4533308 YP_885909.1 CDS MSMEG_1526 NC_008596.1 1616339 1617031 R identified by match to protein family HMM PF01083; cutinase complement(1616339..1617031) Mycobacterium smegmatis str. MC2 155 4533630 YP_885910.1 CDS MSMEG_1528 NC_008596.1 1617095 1617769 R identified by match to protein family HMM PF01083; cutinase complement(1617095..1617769) Mycobacterium smegmatis str. MC2 155 4531506 YP_885911.1 CDS MSMEG_1529 NC_008596.1 1617806 1618441 R identified by match to protein family HMM PF01083; serine esterase, cutinase complement(1617806..1618441) Mycobacterium smegmatis str. MC2 155 4535858 YP_885912.1 CDS MSMEG_1530 NC_008596.1 1618493 1619572 R identified by match to protein family HMM PF00892; integral membrane protein complement(1618493..1619572) Mycobacterium smegmatis str. MC2 155 4536514 YP_885913.1 CDS MSMEG_1531 NC_008596.1 1619643 1620203 D identified by match to protein family HMM PF07336; hypothetical protein 1619643..1620203 Mycobacterium smegmatis str. MC2 155 4535976 YP_885914.1 CDS MSMEG_1532 NC_008596.1 1620225 1620545 R identified by match to protein family HMM PF03992; antibiotic biosynthesis monooxygenase complement(1620225..1620545) Mycobacterium smegmatis str. MC2 155 4535490 YP_885915.1 CDS MSMEG_1534 NC_008596.1 1620683 1622059 D identified by match to protein family HMM PF05108; hypothetical protein 1620683..1622059 Mycobacterium smegmatis str. MC2 155 4536355 YP_885916.1 CDS MSMEG_1533 NC_008596.1 1622024 1623352 R identified by match to protein family HMM PF00082; subtilase complement(1622024..1623352) Mycobacterium smegmatis str. MC2 155 4535446 YP_885917.1 CDS MSMEG_1535 NC_008596.1 1623349 1624662 R hypothetical protein complement(1623349..1624662) Mycobacterium smegmatis str. MC2 155 4537461 YP_885918.1 CDS MSMEG_1536 NC_008596.1 1624781 1628416 D identified by match to protein family HMM PF01580; ftsk/SpoIIIE family protein 1624781..1628416 Mycobacterium smegmatis str. MC2 155 4531513 YP_885919.1 CDS MSMEG_1537 NC_008596.1 1628401 1629507 D hypothetical protein 1628401..1629507 Mycobacterium smegmatis str. MC2 155 4531521 YP_885920.1 CDS MSMEG_1538 NC_008596.1 1629580 1629891 D hypothetical protein 1629580..1629891 Mycobacterium smegmatis str. MC2 155 4536161 YP_885921.1 CDS MSMEG_1539 NC_008596.1 1629917 1630213 D hypothetical protein 1629917..1630213 Mycobacterium smegmatis str. MC2 155 4534507 YP_885922.1 CDS MSMEG_1540 NC_008596.1 1630283 1631665 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; ATP-dependent RNA helicase complement(1630283..1631665) Mycobacterium smegmatis str. MC2 155 4533116 YP_885923.1 CDS MSMEG_1541 NC_008596.1 1631708 1631833 D hypothetical protein 1631708..1631833 Mycobacterium smegmatis str. MC2 155 4534416 YP_885924.1 CDS MSMEG_1542 NC_008596.1 1631951 1633222 D identified by match to protein family HMM PF00486; match to protein family HMM PF01590; transcriptional regulator 1631951..1633222 Mycobacterium smegmatis str. MC2 155 4535292 YP_885925.1 CDS MSMEG_1543 NC_008596.1 1633314 1634858 D identified by match to protein family HMM PF00171; eptc-inducible aldehyde dehydrogenase 1633314..1634858 Mycobacterium smegmatis str. MC2 155 4531410 YP_885926.1 CDS MSMEG_1544 NC_008596.1 1635013 1635411 D identified by match to protein family HMM PF03928; PduO protein 1635013..1635411 Mycobacterium smegmatis str. MC2 155 4532267 YP_885927.1 CDS MSMEG_1545 NC_008596.1 1635427 1636125 R hypothetical protein complement(1635427..1636125) Mycobacterium smegmatis str. MC2 155 4533471 YP_885928.1 CDS MSMEG_1546 NC_008596.1 1636280 1636708 D identified by match to protein family HMM PF02287; coenzyme B12-dependent glycerol dehydrogenase small subunit 1636280..1636708 Mycobacterium smegmatis str. MC2 155 4537095 YP_885929.1 CDS MSMEG_1547 NC_008596.1 1636718 1638430 D identified by match to protein family HMM PF02286; glycerol dehydratase large subunit 1636718..1638430 Mycobacterium smegmatis str. MC2 155 4531613 YP_885930.1 CDS MSMEG_1548 NC_008596.1 1638427 1639029 D identified by match to protein family HMM PF02288; propanediol utilization: dehydratase, medium subunit 1638427..1639029 Mycobacterium smegmatis str. MC2 155 4533068 YP_885931.1 CDS MSMEG_1550 NC_008596.1 1640922 1641263 D PduH protein 1640922..1641263 Mycobacterium smegmatis str. MC2 155 4534757 YP_885932.1 CDS MSMEG_1551 NC_008596.1 1641323 1641517 R hypothetical protein complement(1641323..1641517) Mycobacterium smegmatis str. MC2 155 4536245 YP_885933.1 CDS eat NC_008596.1 1641497 1642909 D identified by match to protein family HMM PF00324; match to protein family HMM TIGR00908; ethanolamine permease 1641497..1642909 Mycobacterium smegmatis str. MC2 155 4535330 YP_885934.1 CDS eutB NC_008596.1 1642906 1644321 D identified by match to protein family HMM PF06751; ethanolamine ammonia-lyase, large subunit 1642906..1644321 Mycobacterium smegmatis str. MC2 155 4534597 YP_885935.1 CDS eutC NC_008596.1 1644318 1645094 D catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 1644318..1645094 Mycobacterium smegmatis str. MC2 155 4531987 YP_885936.1 CDS rplM NC_008596.1 1646296 1646739 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 1646296..1646739 Mycobacterium smegmatis str. MC2 155 4535125 YP_885937.1 CDS rpsI NC_008596.1 1646736 1647188 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 1646736..1647188 Mycobacterium smegmatis str. MC2 155 4537298 YP_885938.1 CDS MSMEG_1558 NC_008596.1 1647548 1648012 D hypothetical protein 1647548..1648012 Mycobacterium smegmatis str. MC2 155 4534366 YP_885939.1 CDS glmM NC_008596.1 1648164 1649525 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1648164..1649525 Mycobacterium smegmatis str. MC2 155 4535479 YP_885940.1 CDS MSMEG_1560 NC_008596.1 1649573 1649881 D hypothetical protein 1649573..1649881 Mycobacterium smegmatis str. MC2 155 4535805 YP_885941.1 CDS MSMEG_1561 NC_008596.1 1651286 1652176 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(1651286..1652176) Mycobacterium smegmatis str. MC2 155 4532630 YP_885942.1 CDS MSMEG_1563 NC_008596.1 1652167 1652964 D short-chain dehydrogenase/reductase SDR 1652167..1652964 Mycobacterium smegmatis str. MC2 155 4537541 YP_885943.1 CDS MSMEG_1564 NC_008596.1 1652977 1654452 R identified by match to protein family HMM PF03055; lignostilbene-alpha,beta-dioxygenase complement(1652977..1654452) Mycobacterium smegmatis str. MC2 155 4534056 YP_885944.1 CDS MSMEG_1565 NC_008596.1 1654695 1655318 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1654695..1655318 Mycobacterium smegmatis str. MC2 155 4535207 YP_885945.1 CDS MSMEG_1566 NC_008596.1 1655346 1656389 R identified by match to protein family HMM PF00296; oxidoreductase complement(1655346..1656389) Mycobacterium smegmatis str. MC2 155 4537437 YP_885946.1 CDS MSMEG_1567 NC_008596.1 1656437 1657288 R hypothetical protein complement(1656437..1657288) Mycobacterium smegmatis str. MC2 155 4535019 YP_885947.1 CDS glmS NC_008596.1 1657467 1659353 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 1657467..1659353 Mycobacterium smegmatis str. MC2 155 4536717 YP_885948.1 CDS MSMEG_1570 NC_008596.1 1659357 1660295 D identified by match to protein family HMM PF00561; carboxylesterase 1659357..1660295 Mycobacterium smegmatis str. MC2 155 4531741 YP_885949.1 CDS MSMEG_1569 NC_008596.1 1660216 1660425 R hypothetical protein complement(1660216..1660425) Mycobacterium smegmatis str. MC2 155 4532043 YP_885950.1 CDS MSMEG_1571 NC_008596.1 1660346 1661329 R identified by match to protein family HMM PF00892; integral membrane protein complement(1660346..1661329) Mycobacterium smegmatis str. MC2 155 4531186 YP_885951.1 CDS MSMEG_1572 NC_008596.1 1661357 1662760 D identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 1661357..1662760 Mycobacterium smegmatis str. MC2 155 4530981 YP_885952.1 CDS MSMEG_1573 NC_008596.1 1662840 1664252 D identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; carbohydrate kinase 1662840..1664252 Mycobacterium smegmatis str. MC2 155 4537243 YP_885953.1 CDS MSMEG_1574 NC_008596.1 1664273 1665652 D identified by match to protein family HMM PF00282; match to protein family HMM TIGR01788; glutamate decarboxylase 1664273..1665652 Mycobacterium smegmatis str. MC2 155 4537342 YP_885954.1 CDS alr NC_008596.1 1665708 1666877 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 1665708..1666877 Mycobacterium smegmatis str. MC2 155 4531809 YP_885955.1 CDS MSMEG_1576 NC_008596.1 1666901 1667959 D identified by match to protein family HMM PF00561; alpha/beta hydrolase 1666901..1667959 Mycobacterium smegmatis str. MC2 155 4533774 YP_885956.1 CDS MSMEG_1577 NC_008596.1 1667952 1668419 D identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 1667952..1668419 Mycobacterium smegmatis str. MC2 155 4531984 YP_885957.1 CDS MSMEG_1578 NC_008596.1 1668416 1669060 D identified by match to protein family HMM PF00814; peptidase M22, glycoprotease 1668416..1669060 Mycobacterium smegmatis str. MC2 155 4535463 YP_885958.1 CDS rimI NC_008596.1 1669057 1669533 D identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase 1669057..1669533 Mycobacterium smegmatis str. MC2 155 4536538 YP_885959.1 CDS gcp NC_008596.1 1669530 1670552 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 1669530..1670552 Mycobacterium smegmatis str. MC2 155 4531302 YP_885960.1 CDS MSMEG_1581 NC_008596.1 1670549 1670998 D hypothetical protein 1670549..1670998 Mycobacterium smegmatis str. MC2 155 4534016 YP_885961.1 CDS groES NC_008596.1 1671178 1671480 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 1671178..1671480 Mycobacterium smegmatis str. MC2 155 4532222 YP_885962.1 CDS groEL NC_008596.1 1671564 1673186 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth; molecular chaperone GroEL 1671564..1673186 Mycobacterium smegmatis str. MC2 155 4533270 YP_885963.1 CDS MSMEG_1584 NC_008596.1 1673236 1673706 D hypothetical protein 1673236..1673706 Mycobacterium smegmatis str. MC2 155 4536321 YP_885964.1 CDS MSMEG_1585 NC_008596.1 1673703 1674266 D identified by match to protein family HMM PF07883; cupin 1673703..1674266 Mycobacterium smegmatis str. MC2 155 4532515 YP_885965.1 CDS MSMEG_1586 NC_008596.1 1674284 1675408 R identified by match to protein family HMM PF00144; beta-lactamase complement(1674284..1675408) Mycobacterium smegmatis str. MC2 155 4536503 YP_885966.1 CDS MSMEG_1588 NC_008596.1 1675529 1675864 D hypothetical protein 1675529..1675864 Mycobacterium smegmatis str. MC2 155 4534039 YP_885967.1 CDS MSMEG_1587 NC_008596.1 1675840 1676820 R alpha/beta hydrolase complement(1675840..1676820) Mycobacterium smegmatis str. MC2 155 4536101 YP_885968.1 CDS MSMEG_1589 NC_008596.1 1676817 1677860 R hypothetical protein complement(1676817..1677860) Mycobacterium smegmatis str. MC2 155 4530923 YP_885969.1 CDS MSMEG_1590 NC_008596.1 1677871 1678182 D hypothetical protein 1677871..1678182 Mycobacterium smegmatis str. MC2 155 4535994 YP_885970.1 CDS MSMEG_1591 NC_008596.1 1678351 1679754 D identified by match to protein family HMM PF01609; TnpC protein 1678351..1679754 Mycobacterium smegmatis str. MC2 155 4533218 YP_885971.1 CDS MSMEG_1592 NC_008596.1 1680305 1681108 D hypothetical protein 1680305..1681108 Mycobacterium smegmatis str. MC2 155 4537672 YP_885972.1 CDS MSMEG_1594 NC_008596.1 1681151 1681948 D identified by match to protein family HMM PF00378; enoyl-CoA hydratase 1681151..1681948 Mycobacterium smegmatis str. MC2 155 4534499 YP_885973.1 CDS MSMEG_1593 NC_008596.1 1681937 1682101 R hypothetical protein complement(1681937..1682101) Mycobacterium smegmatis str. MC2 155 4531660 YP_885974.1 CDS MSMEG_1595 NC_008596.1 1682146 1682877 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF07993; oxidoreductase complement(1682146..1682877) Mycobacterium smegmatis str. MC2 155 4532863 YP_885975.1 CDS MSMEG_1596 NC_008596.1 1682974 1683543 D identified by match to protein family HMM PF00440; transcriptional regulator 1682974..1683543 Mycobacterium smegmatis str. MC2 155 4531070 YP_885976.1 CDS MSMEG_1597 NC_008596.1 1683664 1683954 R identified by match to protein family HMM PF02467; transcription factor WhiB complement(1683664..1683954) Mycobacterium smegmatis str. MC2 155 4532177 YP_885977.1 CDS MSMEG_1598 NC_008596.1 1684388 1685194 D hypothetical protein 1684388..1685194 Mycobacterium smegmatis str. MC2 155 4536706 YP_885978.1 CDS MSMEG_1599 NC_008596.1 1685284 1685862 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this protein is involved in expression of ribosome-associated gene products in stationary phase; RNA polymerase sigma factor SigD 1685284..1685862 Mycobacterium smegmatis str. MC2 155 4530811 YP_885979.1 CDS MSMEG_1600 NC_008596.1 1685855 1687054 D hypothetical protein 1685855..1687054 Mycobacterium smegmatis str. MC2 155 4535757 YP_885980.1 CDS MSMEG_1601 NC_008596.1 1687085 1687495 R hypothetical protein complement(1687085..1687495) Mycobacterium smegmatis str. MC2 155 4531710 YP_885981.1 CDS guaB NC_008596.1 1687637 1689178 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1687637..1689178 Mycobacterium smegmatis str. MC2 155 4535458 YP_885982.1 CDS MSMEG_1603 NC_008596.1 1689207 1690334 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5-monophosphate dehydrogenase 1689207..1690334 Mycobacterium smegmatis str. MC2 155 4531203 YP_885983.1 CDS MSMEG_1604 NC_008596.1 1690403 1692139 D identified by match to protein family HMM PF00037; match to protein family HMM PF01266; FAD dependent oxidoreductase 1690403..1692139 Mycobacterium smegmatis str. MC2 155 4532126 YP_885984.1 CDS phoU NC_008596.1 1692222 1692881 D identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transporter regulatory protein PhoU 1692222..1692881 Mycobacterium smegmatis str. MC2 155 4534975 YP_885985.1 CDS MSMEG_1606 NC_008596.1 1693036 1694649 D identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; benzoylformate decarboxylase 1693036..1694649 Mycobacterium smegmatis str. MC2 155 4531655 YP_885986.1 CDS MSMEG_1607 NC_008596.1 1694678 1695097 D tautomerase 1694678..1695097 Mycobacterium smegmatis str. MC2 155 4532978 YP_885987.1 CDS MSMEG_1608 NC_008596.1 1695107 1697470 R identified by match to protein family HMM PF03632; match to protein family HMM PF03633; match to protein family HMM PF03636; glycosyl transferase family protein complement(1695107..1697470) Mycobacterium smegmatis str. MC2 155 4535673 YP_885988.1 CDS guaA NC_008596.1 1698411 1699973 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1698411..1699973 Mycobacterium smegmatis str. MC2 155 4531917 YP_885989.1 CDS MSMEG_1611 NC_008596.1 1699984 1700661 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1699984..1700661 Mycobacterium smegmatis str. MC2 155 4531864 YP_885990.1 CDS MSMEG_1612 NC_008596.1 1700804 1701661 D identified by match to protein family HMM PF00497; extracellular solute-binding protein 1700804..1701661 Mycobacterium smegmatis str. MC2 155 4534773 YP_885991.1 CDS MSMEG_1613 NC_008596.1 1701672 1702463 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; polar amino acid ABC transporter inner membrane protein 1701672..1702463 Mycobacterium smegmatis str. MC2 155 4535382 YP_885992.1 CDS MSMEG_1614 NC_008596.1 1702467 1703264 D identified by match to protein family HMM PF00005; glutamine transport ATP-binding protein GlnQ 1702467..1703264 Mycobacterium smegmatis str. MC2 155 4537125 YP_885993.1 CDS ggt NC_008596.1 1703278 1704852 D identified by match to protein family HMM PF01019; gamma-glutamyltranspeptidase 1703278..1704852 Mycobacterium smegmatis str. MC2 155 4535892 YP_885994.1 CDS MSMEG_1617 NC_008596.1 1706845 1708497 R kumamolisin complement(1706845..1708497) Mycobacterium smegmatis str. MC2 155 4537406 YP_885995.1 CDS MSMEG_1618 NC_008596.1 1708535 1708825 R hypothetical protein complement(1708535..1708825) Mycobacterium smegmatis str. MC2 155 4537729 YP_885996.1 CDS MSMEG_1619 NC_008596.1 1709112 1709237 D hypothetical protein 1709112..1709237 Mycobacterium smegmatis str. MC2 155 4535517 YP_885997.1 CDS MSMEG_1620 NC_008596.1 1709234 1709941 D hypothetical protein 1709234..1709941 Mycobacterium smegmatis str. MC2 155 4532433 YP_885998.1 CDS MSMEG_1622 NC_008596.1 1709944 1711521 D DNA repair polymerase 1709944..1711521 Mycobacterium smegmatis str. MC2 155 4536980 YP_885999.1 CDS MSMEG_1621 NC_008596.1 1711512 1712564 R identified by match to protein family HMM PF01156; pyrimidine-specific ribonucleoside hydrolase RihA complement(1711512..1712564) Mycobacterium smegmatis str. MC2 155 4537501 YP_886000.1 CDS MSMEG_1623 NC_008596.1 1712618 1714654 R identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; short chain dehydrogenase complement(1712618..1714654) Mycobacterium smegmatis str. MC2 155 4532747 YP_886001.1 CDS MSMEG_1624 NC_008596.1 1714853 1715740 D universal stress protein family protein 1714853..1715740 Mycobacterium smegmatis str. MC2 155 4532437 YP_886002.1 CDS MSMEG_1625 NC_008596.1 1715737 1717305 D identified by match to protein family HMM PF00324; amino acid transporter 1715737..1717305 Mycobacterium smegmatis str. MC2 155 4534715 YP_886003.1 CDS MSMEG_1626 NC_008596.1 1717307 1718188 R DNA-binding protein complement(1717307..1718188) Mycobacterium smegmatis str. MC2 155 4537030 YP_886004.1 CDS MSMEG_1628 NC_008596.1 1718346 1719197 D identified by match to protein family HMM PF00106; oxidoreductase, short chain dehydrogenase/reductase 1718346..1719197 Mycobacterium smegmatis str. MC2 155 4531511 YP_886005.1 CDS MSMEG_1627 NC_008596.1 1719178 1719336 R hypothetical protein complement(1719178..1719336) Mycobacterium smegmatis str. MC2 155 4532197 YP_886006.1 CDS MSMEG_1629 NC_008596.1 1719261 1720430 R hypothetical protein complement(1719261..1720430) Mycobacterium smegmatis str. MC2 155 4531894 YP_886007.1 CDS MSMEG_1630 NC_008596.1 1720546 1721337 R identified by match to protein family HMM PF00106; 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase complement(1720546..1721337) Mycobacterium smegmatis str. MC2 155 4531737 YP_886008.1 CDS MSMEG_1631 NC_008596.1 1721434 1722288 D DNA-binding protein 1721434..1722288 Mycobacterium smegmatis str. MC2 155 4532096 YP_886009.1 CDS dnaE2 NC_008596.1 1722325 1725612 D DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; error-prone DNA polymerase 1722325..1725612 Mycobacterium smegmatis str. MC2 155 4536540 YP_886010.1 CDS MSMEG_1632 NC_008596.1 1725589 1726479 R hypothetical protein complement(1725589..1726479) Mycobacterium smegmatis str. MC2 155 4537014 YP_886011.1 CDS MSMEG_1634 NC_008596.1 1726761 1727360 D forkhead-associated protein 1726761..1727360 Mycobacterium smegmatis str. MC2 155 4534267 YP_886012.1 CDS MSMEG_1635 NC_008596.1 1727405 1728046 D identified by match to protein family HMM PF00881; nitroreductase 1727405..1728046 Mycobacterium smegmatis str. MC2 155 4533595 YP_886013.1 CDS MSMEG_1636 NC_008596.1 1728064 1728528 R identified by match to protein family HMM PF00588; TrmH family RNA methyltransferase complement(1728064..1728528) Mycobacterium smegmatis str. MC2 155 4533766 YP_886014.1 CDS MSMEG_1637 NC_008596.1 1728945 1731728 D identified by match to protein family HMM PF00672; match to protein family HMM PF02518; sensor signal transduction histidine kinase 1728945..1731728 Mycobacterium smegmatis str. MC2 155 4535205 YP_886015.1 CDS MSMEG_1638 NC_008596.1 1731725 1732132 D identified by match to protein family HMM PF03259; roadblock/LC7 domain-contain protein 1731725..1732132 Mycobacterium smegmatis str. MC2 155 4535855 YP_886016.1 CDS MSMEG_1639 NC_008596.1 1732149 1732514 D identified by match to protein family HMM PF05331; hypothetical protein 1732149..1732514 Mycobacterium smegmatis str. MC2 155 4536883 YP_886017.1 CDS MSMEG_1640 NC_008596.1 1732495 1733076 D identified by match to protein family HMM PF03029; ATP/GTP-binding protein 1732495..1733076 Mycobacterium smegmatis str. MC2 155 4535177 YP_886018.1 CDS MSMEG_1641 NC_008596.1 1733082 1733657 D identified by match to protein family HMM PF00805; hypothetical protein 1733082..1733657 Mycobacterium smegmatis str. MC2 155 4531898 YP_886019.1 CDS MSMEG_1642 NC_008596.1 1733760 1736459 R identified by match to protein family HMM PF00005; match to protein family HMM PF00498; match to protein family HMM PF01061; ABC transporter ATP-binding protein complement(1733760..1736459) Mycobacterium smegmatis str. MC2 155 4536188 YP_886020.1 CDS MSMEG_1643 NC_008596.1 1736549 1738318 D hypothetical protein 1736549..1738318 Mycobacterium smegmatis str. MC2 155 4533596 YP_886021.1 CDS MSMEG_1644 NC_008596.1 1738323 1739228 R hypothetical protein complement(1738323..1739228) Mycobacterium smegmatis str. MC2 155 4535742 YP_886022.1 CDS MSMEG_1645 NC_008596.1 1739234 1740454 R identified by match to protein family HMM PF00724; NADH:flavin oxidoreductase complement(1739234..1740454) Mycobacterium smegmatis str. MC2 155 4531116 YP_886023.1 CDS MSMEG_1647 NC_008596.1 1740535 1741386 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 1740535..1741386 Mycobacterium smegmatis str. MC2 155 4536006 YP_886024.1 CDS MSMEG_1646 NC_008596.1 1741293 1742453 R identified by match to protein family HMM PF00398; ribosomal RNA adenine dimethylase complement(1741293..1742453) Mycobacterium smegmatis str. MC2 155 4536532 YP_886025.1 CDS MSMEG_1648 NC_008596.1 1742683 1743300 D identified by match to protein family HMM PF00440; transcriptional regulator 1742683..1743300 Mycobacterium smegmatis str. MC2 155 4537434 YP_886026.1 CDS MSMEG_1649 NC_008596.1 1743297 1744841 D identified by match to protein family HMM PF01266; match to protein family HMM PF01494; FAD dependent oxidoreductase 1743297..1744841 Mycobacterium smegmatis str. MC2 155 4531776 YP_886027.1 CDS MSMEG_1650 NC_008596.1 1744845 1745582 R methyltransferase type 11 complement(1744845..1745582) Mycobacterium smegmatis str. MC2 155 4531277 YP_886028.1 CDS metX NC_008596.1 1745579 1746721 R Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase complement(1745579..1746721) Mycobacterium smegmatis str. MC2 155 4533271 YP_886029.1 CDS MSMEG_1652 NC_008596.1 1746742 1748073 R catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase complement(1746742..1748073) Mycobacterium smegmatis str. MC2 155 4535837 YP_886030.1 CDS MSMEG_1653 NC_008596.1 1748300 1748419 R hypothetical protein complement(1748300..1748419) Mycobacterium smegmatis str. MC2 155 4533659 YP_886031.1 CDS MSMEG_1654 NC_008596.1 1748543 1750774 D identified by match to protein family HMM PF03971; match to protein family HMM TIGR00178; isocitrate dehydrogenase 1748543..1750774 Mycobacterium smegmatis str. MC2 155 4535441 YP_886032.1 CDS MSMEG_1655 NC_008596.1 1750851 1751690 R identified by match to protein family HMM PF00561; alpha/beta hydrolase complement(1750851..1751690) Mycobacterium smegmatis str. MC2 155 4530950 YP_886033.1 CDS xth NC_008596.1 1751775 1752596 D identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III 1751775..1752596 Mycobacterium smegmatis str. MC2 155 4532964 YP_886034.1 CDS trpS NC_008596.1 1752612 1753628 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 1752612..1753628 Mycobacterium smegmatis str. MC2 155 4536364 YP_886035.1 CDS MSMEG_1658 NC_008596.1 1753643 1754680 D identified by match to protein family HMM PF03631; match to protein family HMM TIGR00766; ribonuclease 1753643..1754680 Mycobacterium smegmatis str. MC2 155 4535082 YP_886036.1 CDS MSMEG_1659 NC_008596.1 1754723 1755040 R identified by match to protein family HMM PF00893; multidrug resistance protein, SMR family protein complement(1754723..1755040) Mycobacterium smegmatis str. MC2 155 4532838 YP_886037.1 CDS MSMEG_1660 NC_008596.1 1755150 1756019 D identified by match to protein family HMM PF03060; oxidoreductase, 2-nitropropane dioxygenase 1755150..1756019 Mycobacterium smegmatis str. MC2 155 4534245 YP_886038.1 CDS MSMEG_1661 NC_008596.1 1756022 1757215 R identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase complement(1756022..1757215) Mycobacterium smegmatis str. MC2 155 4536749 YP_886039.1 CDS MSMEG_1662 NC_008596.1 1757394 1758779 R identified by match to protein family HMM PF00202; hypothetical protein complement(1757394..1758779) Mycobacterium smegmatis str. MC2 155 4536710 YP_886040.1 CDS MSMEG_1663 NC_008596.1 1758776 1759246 R identified by match to protein family HMM PF01037; AsnC family transcriptional regulator complement(1758776..1759246) Mycobacterium smegmatis str. MC2 155 4531922 YP_886041.1 CDS MSMEG_1664 NC_008596.1 1759209 1759499 R hypothetical protein complement(1759209..1759499) Mycobacterium smegmatis str. MC2 155 4534146 YP_886042.1 CDS MSMEG_1665 NC_008596.1 1759434 1760915 D catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase 1759434..1760915 Mycobacterium smegmatis str. MC2 155 4535808 YP_886043.1 CDS MSMEG_1666 NC_008596.1 1761019 1761933 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor SigJ 1761019..1761933 Mycobacterium smegmatis str. MC2 155 4532018 YP_886044.1 CDS MSMEG_1668 NC_008596.1 1761933 1762454 D identified by match to protein family HMM PF01243; pyridoxamine 5'-phosphate oxidase 1761933..1762454 Mycobacterium smegmatis str. MC2 155 4533608 YP_886045.1 CDS sdhB NC_008596.1 1763124 1763909 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(1763124..1763909) Mycobacterium smegmatis str. MC2 155 4532847 YP_886046.1 CDS sdhA NC_008596.1 1763912 1765666 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(1763912..1765666) Mycobacterium smegmatis str. MC2 155 4533025 YP_886047.1 CDS MSMEG_1671 NC_008596.1 1765677 1766147 R succinate dehydrogenase hydrophobic membrane anchor protein SdhD complement(1765677..1766147) Mycobacterium smegmatis str. MC2 155 4533506 YP_886048.1 CDS sdhC NC_008596.1 1766144 1766560 R identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970; succinate dehydrogenase, cytochrome b556 subunit complement(1766144..1766560) Mycobacterium smegmatis str. MC2 155 4534430 YP_886049.1 CDS cdd NC_008596.1 1766790 1767176 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 1766790..1767176 Mycobacterium smegmatis str. MC2 155 4537274 YP_886050.1 CDS MSMEG_1674 NC_008596.1 1767247 1767342 R hypothetical protein complement(1767247..1767342) Mycobacterium smegmatis str. MC2 155 4535803 YP_886051.1 CDS deoA NC_008596.1 1767305 1768546 D Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 1767305..1768546 Mycobacterium smegmatis str. MC2 155 4534504 YP_886052.1 CDS add NC_008596.1 1768749 1769849 D catalyzes the formation of inosine from adenosine; adenosine deaminase 1768749..1769849 Mycobacterium smegmatis str. MC2 155 4534008 YP_886053.1 CDS MSMEG_1678 NC_008596.1 1769956 1770891 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1769956..1770891 Mycobacterium smegmatis str. MC2 155 4531997 YP_886054.1 CDS aspA NC_008596.1 1770884 1772305 R identified by match to protein family HMM PF00206; aspartate ammonia-lyase complement(1770884..1772305) Mycobacterium smegmatis str. MC2 155 4532394 YP_886055.1 CDS MSMEG_1679 NC_008596.1 1772302 1773459 R identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891; AmiB protein complement(1772302..1773459) Mycobacterium smegmatis str. MC2 155 4536812 YP_886056.1 CDS MSMEG_1680 NC_008596.1 1773456 1774130 R identified by match to protein family HMM PF06267; hypothetical protein complement(1773456..1774130) Mycobacterium smegmatis str. MC2 155 4534038 YP_886057.1 CDS MSMEG_1681 NC_008596.1 1774127 1774570 R identified by match to protein family HMM PF01042; endoribonuclease L-PSP superfamily protein complement(1774127..1774570) Mycobacterium smegmatis str. MC2 155 4531283 YP_886058.1 CDS MSMEG_1682 NC_008596.1 1774567 1775832 R flavin-containing monooxygenase FMO complement(1774567..1775832) Mycobacterium smegmatis str. MC2 155 4533706 YP_886059.1 CDS MSMEG_1683 NC_008596.1 1775984 1777435 R identified by match to protein family HMM PF02133; cytosine/purines uracil thiamine allantoin permease complement(1775984..1777435) Mycobacterium smegmatis str. MC2 155 4536864 YP_886060.1 CDS MSMEG_1684 NC_008596.1 1777578 1778873 R hypothetical protein complement(1777578..1778873) Mycobacterium smegmatis str. MC2 155 4537567 YP_886061.1 CDS MSMEG_1685 NC_008596.1 1778947 1779114 R hypothetical protein complement(1778947..1779114) Mycobacterium smegmatis str. MC2 155 4531085 YP_886062.1 CDS MSMEG_1686 NC_008596.1 1779111 1780178 R identified by match to protein family HMM PF00877; NPL/P60-family protein membrane protein complement(1779111..1780178) Mycobacterium smegmatis str. MC2 155 4532384 YP_886063.1 CDS MSMEG_1687 NC_008596.1 1780185 1780475 R hypothetical protein complement(1780185..1780475) Mycobacterium smegmatis str. MC2 155 4532427 YP_886064.1 CDS MSMEG_1688 NC_008596.1 1780527 1780937 R identified by match to protein family HMM PF07883; cupin complement(1780527..1780937) Mycobacterium smegmatis str. MC2 155 4533023 YP_886065.1 CDS MSMEG_1689 NC_008596.1 1780950 1781672 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF07993; 3-oxoacyl-ACP reductase complement(1780950..1781672) Mycobacterium smegmatis str. MC2 155 4531749 YP_886066.1 CDS MSMEG_1690 NC_008596.1 1781688 1782320 R identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; ECF sigma factor RpoE1 complement(1781688..1782320) Mycobacterium smegmatis str. MC2 155 4533658 YP_886067.1 CDS MSMEG_1691 NC_008596.1 1782369 1785062 R identified by match to protein family HMM PF00196; transcriptional regulatory protein complement(1782369..1785062) Mycobacterium smegmatis str. MC2 155 4536414 YP_886068.1 CDS MSMEG_1692 NC_008596.1 1785177 1786091 D identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; match to protein family HMM TIGR02957; ECF-family protein RNA polymerase sigma factor 1785177..1786091 Mycobacterium smegmatis str. MC2 155 4531659 YP_886069.1 CDS MSMEG_1693 NC_008596.1 1786092 1787828 R identified by match to protein family HMM PF00890; match to protein family HMM PF02910; succinate dehydrogenase [ubiquinone] flavoprotein subunit complement(1786092..1787828) Mycobacterium smegmatis str. MC2 155 4537621 YP_886070.1 CDS upp NC_008596.1 1787883 1788506 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 1787883..1788506 Mycobacterium smegmatis str. MC2 155 4530821 YP_886071.1 CDS MSMEG_1695 NC_008596.1 1788531 1790147 R identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphoglucomutase/phosphomannomutase complement(1788531..1790147) Mycobacterium smegmatis str. MC2 155 4535397 YP_886072.1 CDS MSMEG_1696 NC_008596.1 1790144 1790620 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(1790144..1790620) Mycobacterium smegmatis str. MC2 155 4531420 YP_886073.1 CDS MSMEG_1698 NC_008596.1 1790726 1791835 D identified by match to protein family HMM PF05145; match to protein family HMM TIGR03082; ammonia monooxygenase 1790726..1791835 Mycobacterium smegmatis str. MC2 155 4534739 YP_886074.1 CDS MSMEG_1697 NC_008596.1 1791793 1792557 R hypothetical protein complement(1791793..1792557) Mycobacterium smegmatis str. MC2 155 4536419 YP_886075.1 CDS MSMEG_1699 NC_008596.1 1792582 1793730 R identified by match to protein family HMM PF01266; match to protein family HMM PF01494; pentachlorophenol 4-monooxygenase complement(1792582..1793730) Mycobacterium smegmatis str. MC2 155 4537347 YP_886076.1 CDS MSMEG_1700 NC_008596.1 1793829 1794374 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1793829..1794374 Mycobacterium smegmatis str. MC2 155 4537066 YP_886077.1 CDS MSMEG_1701 NC_008596.1 1794381 1795175 R catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase complement(1794381..1795175) Mycobacterium smegmatis str. MC2 155 4532314 YP_886078.1 CDS MSMEG_1702 NC_008596.1 1795223 1796407 D identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; amidohydrolase 1795223..1796407 Mycobacterium smegmatis str. MC2 155 4534746 YP_886079.1 CDS MSMEG_1703 NC_008596.1 1796404 1797576 D identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891; amidohydrolase 1796404..1797576 Mycobacterium smegmatis str. MC2 155 4532388 YP_886080.1 CDS MSMEG_1704 NC_008596.1 1797877 1798974 D ABC transporter 1797877..1798974 Mycobacterium smegmatis str. MC2 155 4531983 YP_886081.1 CDS MSMEG_1705 NC_008596.1 1798971 1800500 D identified by match to protein family HMM PF00005; D-xylose transport ATP-binding protein XylG 1798971..1800500 Mycobacterium smegmatis str. MC2 155 4532843 YP_886082.1 CDS MSMEG_1706 NC_008596.1 1800501 1801760 D identified by match to protein family HMM PF02653; xylose transporter permease XylH 1800501..1801760 Mycobacterium smegmatis str. MC2 155 4537635 YP_886083.1 CDS MSMEG_1707 NC_008596.1 1801804 1802463 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; phosphatase YfbT complement(1801804..1802463) Mycobacterium smegmatis str. MC2 155 4531360 YP_886084.1 CDS MSMEG_1708 NC_008596.1 1802474 1803478 R identified by similarity to SP:P03023; match to protein family HMM PF00356; match to protein family HMM PF00532; ribose operon repressor complement(1802474..1803478) Mycobacterium smegmatis str. MC2 155 4531797 YP_886085.1 CDS MSMEG_1709 NC_008596.1 1803499 1804524 R identified by match to protein family HMM PF02653; ABC transporter complement(1803499..1804524) Mycobacterium smegmatis str. MC2 155 4536731 YP_886086.1 CDS MSMEG_1710 NC_008596.1 1804521 1805594 R identified by match to protein family HMM PF02653; ribose transporter permease RbsC complement(1804521..1805594) Mycobacterium smegmatis str. MC2 155 4531394 YP_886087.1 CDS MSMEG_1711 NC_008596.1 1805591 1807099 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1805591..1807099) Mycobacterium smegmatis str. MC2 155 4537311 YP_886088.1 CDS MSMEG_1712 NC_008596.1 1807122 1808108 R identified by match to protein family HMM PF00532; ABC transporter periplasmic protein complement(1807122..1808108) Mycobacterium smegmatis str. MC2 155 4537346 YP_886089.1 CDS araB NC_008596.1 1808508 1810199 D catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase 1808508..1810199 Mycobacterium smegmatis str. MC2 155 4537138 YP_886090.1 CDS MSMEG_1714 NC_008596.1 1810196 1810891 D catalyzes the formation of D-xylulose 5-phosphate from L-ribulose 5-phosphate; L-ribulose-5-phosphate 4-epimerase 1810196..1810891 Mycobacterium smegmatis str. MC2 155 4536316 YP_886091.1 CDS araA NC_008596.1 1810894 1812399 D catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase 1810894..1812399 Mycobacterium smegmatis str. MC2 155 4535431 YP_886092.1 CDS MSMEG_1716 NC_008596.1 1812681 1812956 D identified by similarity to GP:15619022; match to protein family HMM PF01527; IS3 family protein element, transposase orfA 1812681..1812956 Mycobacterium smegmatis str. MC2 155 4532850 YP_886093.1 CDS MSMEG_1717 NC_008596.1 1813566 1814966 R identified by similarity to SP:P37248; match to protein family HMM PF00665; ISMsm8, transposase complement(1813566..1814966) Mycobacterium smegmatis str. MC2 155 4535478 YP_886094.1 CDS MSMEG_1720 NC_008596.1 1815873 1816148 D similar at the nucleotide level to IS1137 in the IS Finder database.; identified by match to protein family HMM PF01527; IS1137, transposase orfA 1815873..1816148 Mycobacterium smegmatis str. MC2 155 4531671 YP_886095.1 CDS MSMEG_1721 NC_008596.1 1816151 1817104 D similar at the nucleotide level to IS1137 in the IS Finder database.; identified by match to protein family HMM PF00665; IS1137, transposase orfB 1816151..1817104 Mycobacterium smegmatis str. MC2 155 4530998 YP_886096.1 CDS MSMEG_1722 NC_008596.1 1817135 1817806 R hypothetical protein complement(1817135..1817806) Mycobacterium smegmatis str. MC2 155 4533370 YP_886097.1 CDS MSMEG_1723 NC_008596.1 1818047 1818370 D hypothetical protein 1818047..1818370 Mycobacterium smegmatis str. MC2 155 4532484 YP_886098.1 CDS MSMEG_1724 NC_008596.1 1818478 1818885 R hypothetical protein complement(1818478..1818885) Mycobacterium smegmatis str. MC2 155 4535715 YP_886099.1 CDS MSMEG_1725 NC_008596.1 1819287 1819676 D transposase 1819287..1819676 Mycobacterium smegmatis str. MC2 155 4533001 YP_886100.1 CDS MSMEG_1726 NC_008596.1 1819676 1820689 D identified by match to protein family HMM PF00665; transposase 1819676..1820689 Mycobacterium smegmatis str. MC2 155 4530845 YP_886101.1 CDS MSMEG_1728 NC_008596.1 1821176 1821511 D identified by similarity to GP:16551202; match to protein family HMM PF01527; ISMsm1, transposase orfA 1821176..1821511 Mycobacterium smegmatis str. MC2 155 4531325 YP_886102.1 CDS MSMEG_1730 NC_008596.1 1821508 1822437 D identified by similarity to GP:16551202; match to protein family HMM PF00665; ISMsm1, transposase orfB 1821508..1822437 Mycobacterium smegmatis str. MC2 155 4533828 YP_886103.1 CDS MSMEG_1732 NC_008596.1 1823395 1824546 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase IS116/IS110/IS902 1823395..1824546 Mycobacterium smegmatis str. MC2 155 4531868 YP_886104.1 CDS MSMEG_1731 NC_008596.1 1824488 1825807 R identified by similarity to SP:P35883; match to protein family HMM PF00872; IS6120, transposase complement(1824488..1825807) Mycobacterium smegmatis str. MC2 155 4533873 YP_886105.1 CDS MSMEG_1733 NC_008596.1 1826089 1826988 D hypothetical protein 1826089..1826988 Mycobacterium smegmatis str. MC2 155 4536253 YP_886106.1 CDS MSMEG_1734 NC_008596.1 1827076 1827543 R hypothetical protein complement(1827076..1827543) Mycobacterium smegmatis str. MC2 155 4531516 YP_886107.1 CDS MSMEG_1735 NC_008596.1 1827585 1829000 D catalyzes the reduction of nonspecific electron acceptors such as 2,6-dimethyl-1,4-benzoquinone and 5-hydroxy-1,4-naphthaquinone; does not have lipoamide dehydrogenase activity; flavoprotein disulfide reductase 1827585..1829000 Mycobacterium smegmatis str. MC2 155 4531193 YP_886108.1 CDS MSMEG_1736 NC_008596.1 1829060 1830805 D identified by match to protein family HMM PF01266; glycerol-3-phosphate dehydrogenase 1829060..1830805 Mycobacterium smegmatis str. MC2 155 4533568 YP_886109.1 CDS MSMEG_1737 NC_008596.1 1830802 1831677 D identified by match to protein family HMM PF00849; RNA pseudouridine synthase 1830802..1831677 Mycobacterium smegmatis str. MC2 155 4533866 YP_886110.1 CDS MSMEG_1738 NC_008596.1 1831699 1832286 R transmembrane protein complement(1831699..1832286) Mycobacterium smegmatis str. MC2 155 4536791 YP_886111.1 CDS MSMEG_1740 NC_008596.1 1832435 1833205 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; dehydrogenase/reductase SDR family protein member 4 1832435..1833205 Mycobacterium smegmatis str. MC2 155 4534927 YP_886112.1 CDS MSMEG_1739 NC_008596.1 1833174 1833962 R identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase complement(1833174..1833962) Mycobacterium smegmatis str. MC2 155 4535209 YP_886113.1 CDS MSMEG_1741 NC_008596.1 1833986 1834660 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(1833986..1834660) Mycobacterium smegmatis str. MC2 155 4533528 YP_886114.1 CDS MSMEG_1742 NC_008596.1 1834732 1835823 D identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; oxidoreductase 1834732..1835823 Mycobacterium smegmatis str. MC2 155 4536230 YP_886115.1 CDS MSMEG_1743 NC_008596.1 1835832 1836980 D identified by match to protein family HMM PF00487; Fatty acid desaturase 1835832..1836980 Mycobacterium smegmatis str. MC2 155 4531236 YP_886116.1 CDS MSMEG_1744 NC_008596.1 1837050 1837967 R hypothetical protein complement(1837050..1837967) Mycobacterium smegmatis str. MC2 155 4537706 YP_886117.1 CDS MSMEG_1745 NC_008596.1 1838043 1838657 R identified by match to protein family HMM PF00440; transcriptional regulator complement(1838043..1838657) Mycobacterium smegmatis str. MC2 155 4534060 YP_886118.1 CDS MSMEG_1746 NC_008596.1 1838767 1840137 D identified by match to protein family HMM PF01565; 6-hydroxy-D-nicotine oxidase 1838767..1840137 Mycobacterium smegmatis str. MC2 155 4537067 YP_886119.1 CDS MSMEG_1747 NC_008596.1 1840251 1840865 D identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; RNA polymerase sigma-70 factor 1840251..1840865 Mycobacterium smegmatis str. MC2 155 4533031 YP_886120.1 CDS MSMEG_1748 NC_008596.1 1840862 1841299 D identified by match to protein family HMM PF06172; hypothetical protein 1840862..1841299 Mycobacterium smegmatis str. MC2 155 4531816 YP_886121.1 CDS MSMEG_1750 NC_008596.1 1841151 1841429 D hypothetical protein 1841151..1841429 Mycobacterium smegmatis str. MC2 155 4536148 YP_886122.1 CDS MSMEG_1749 NC_008596.1 1841333 1842214 R monooxygenase complement(1841333..1842214) Mycobacterium smegmatis str. MC2 155 4532551 YP_886123.1 CDS MSMEG_1751 NC_008596.1 1842253 1843281 R identified by match to protein family HMM PF00248; norsolorinic acid reductase complement(1842253..1843281) Mycobacterium smegmatis str. MC2 155 4536226 YP_886124.1 CDS MSMEG_1752 NC_008596.1 1843338 1843448 R hypothetical protein complement(1843338..1843448) Mycobacterium smegmatis str. MC2 155 4535652 YP_886125.1 CDS mtnN NC_008596.1 1843365 1844117 D identified by match to protein family HMM PF01048; match to protein family HMM TIGR01704; MTA/SAH nucleosidase 1843365..1844117 Mycobacterium smegmatis str. MC2 155 4534264 YP_886126.1 CDS MSMEG_1754 NC_008596.1 1844249 1844629 D hypothetical protein 1844249..1844629 Mycobacterium smegmatis str. MC2 155 4534857 YP_886127.1 CDS MSMEG_1755 NC_008596.1 1844642 1845010 R anti-sigm factor, ChrR complement(1844642..1845010) Mycobacterium smegmatis str. MC2 155 4532681 YP_886128.1 CDS MSMEG_1756 NC_008596.1 1845058 1845816 R identified by match to protein family HMM PF01149; match to protein family HMM PF06827; match to protein family HMM PF06831; endonuclease VIII complement(1845058..1845816) Mycobacterium smegmatis str. MC2 155 4531813 YP_886129.1 CDS MSMEG_1757 NC_008596.1 1845819 1850342 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase complement(1845819..1850342) Mycobacterium smegmatis str. MC2 155 4531397 YP_886130.1 CDS MSMEG_1758 NC_008596.1 1850404 1850577 R hypothetical protein complement(1850404..1850577) Mycobacterium smegmatis str. MC2 155 4534625 YP_886131.1 CDS MSMEG_1759 NC_008596.1 1850576 1850854 D hypothetical protein 1850576..1850854 Mycobacterium smegmatis str. MC2 155 4533104 YP_886132.1 CDS MSMEG_1761 NC_008596.1 1850826 1852142 D identified by match to protein family HMM PF06762; integral membrane protein 1850826..1852142 Mycobacterium smegmatis str. MC2 155 4537553 YP_886133.1 CDS MSMEG_1760 NC_008596.1 1852110 1852925 R identified by match to protein family HMM PF00106; short-chain dehydrogenase/reductase SDR complement(1852110..1852925) Mycobacterium smegmatis str. MC2 155 4537046 YP_886134.1 CDS MSMEG_1762 NC_008596.1 1852964 1854547 R identified by match to protein family HMM PF00171; piperideine-6-carboxylic acid dehydrogenase complement(1852964..1854547) Mycobacterium smegmatis str. MC2 155 4534634 YP_886135.1 CDS MSMEG_1763 NC_008596.1 1854610 1855083 D identified by match to protein family HMM PF01037; leucine-responsive regulatory protein 1854610..1855083 Mycobacterium smegmatis str. MC2 155 4536811 YP_886136.1 CDS MSMEG_1764 NC_008596.1 1855136 1856500 D catalyzes the formation of 2-aminoadipate 6-semiladehyde and glutamate from lysine and 2-oxoglutarate; L-lysine aminotransferase 1855136..1856500 Mycobacterium smegmatis str. MC2 155 4532782 YP_886137.1 CDS MSMEG_1765 NC_008596.1 1856508 1857038 R identified by match to protein family HMM PF04471; restriction endonuclease complement(1856508..1857038) Mycobacterium smegmatis str. MC2 155 4534051 YP_886138.1 CDS MSMEG_1766 NC_008596.1 1857176 1857421 D hypothetical protein 1857176..1857421 Mycobacterium smegmatis str. MC2 155 4531440 YP_886139.1 CDS MSMEG_1767 NC_008596.1 1857437 1857826 D hypothetical protein 1857437..1857826 Mycobacterium smegmatis str. MC2 155 4534069 YP_886140.1 CDS MSMEG_1768 NC_008596.1 1857823 1858440 D hypothetical protein 1857823..1858440 Mycobacterium smegmatis str. MC2 155 4535071 YP_886141.1 CDS MSMEG_1769 NC_008596.1 1858494 1858793 D UsfY protein 1858494..1858793 Mycobacterium smegmatis str. MC2 155 4531492 YP_886142.1 CDS MSMEG_1770 NC_008596.1 1858875 1859117 R identified by match to protein family HMM PF05532; hypothetical protein complement(1858875..1859117) Mycobacterium smegmatis str. MC2 155 4535938 YP_886143.1 CDS MSMEG_1771 NC_008596.1 1859306 1859974 D identified by match to protein family HMM PF01170; match to protein family HMM PF05175; match to protein family HMM TIGR00537; methylase 1859306..1859974 Mycobacterium smegmatis str. MC2 155 4535951 YP_886144.1 CDS MSMEG_1772 NC_008596.1 1859971 1860186 D hypothetical protein 1859971..1860186 Mycobacterium smegmatis str. MC2 155 4531377 YP_886145.1 CDS MSMEG_1773 NC_008596.1 1860268 1861290 R hypothetical protein complement(1860268..1861290) Mycobacterium smegmatis str. MC2 155 4537017 YP_886146.1 CDS MSMEG_1774 NC_008596.1 1861547 1862041 R hypothetical protein complement(1861547..1862041) Mycobacterium smegmatis str. MC2 155 4536933 YP_886147.1 CDS MSMEG_1775 NC_008596.1 1862204 1863577 D cytochrome P450 monooxygenase 1862204..1863577 Mycobacterium smegmatis str. MC2 155 4534035 YP_886148.1 CDS MSMEG_1776 NC_008596.1 1863597 1864526 R member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z complement(1863597..1864526) Mycobacterium smegmatis str. MC2 155 4536845 YP_886149.1 CDS MSMEG_1777 NC_008596.1 1864669 1864974 D UsfY protein 1864669..1864974 Mycobacterium smegmatis str. MC2 155 4532466 YP_886150.1 CDS MSMEG_1778 NC_008596.1 1864985 1865326 R hypothetical protein complement(1864985..1865326) Mycobacterium smegmatis str. MC2 155 4535522 YP_886151.1 CDS MSMEG_1779 NC_008596.1 1865313 1865714 R hypothetical protein complement(1865313..1865714) Mycobacterium smegmatis str. MC2 155 4532775 YP_886152.1 CDS MSMEG_1780 NC_008596.1 1865711 1866940 R hypothetical protein complement(1865711..1866940) Mycobacterium smegmatis str. MC2 155 4530940 YP_886153.1 CDS MSMEG_1781 NC_008596.1 1866940 1867401 R hypothetical protein complement(1866940..1867401) Mycobacterium smegmatis str. MC2 155 4536117 YP_886154.1 CDS MSMEG_1782 NC_008596.1 1867419 1868306 R identified by match to protein family HMM PF00106; oxidoreductase, short chain dehydrogenase/reductase complement(1867419..1868306) Mycobacterium smegmatis str. MC2 155 4536295 YP_886155.1 CDS MSMEG_1783 NC_008596.1 1868321 1868551 R hypothetical protein complement(1868321..1868551) Mycobacterium smegmatis str. MC2 155 4532663 YP_886156.1 CDS MSMEG_1785 NC_008596.1 1868617 1869747 D hypothetical protein 1868617..1869747 Mycobacterium smegmatis str. MC2 155 4533242 YP_886157.1 CDS MSMEG_1784 NC_008596.1 1868641 1869657 R type I topoisomerase complement(1868641..1869657) Mycobacterium smegmatis str. MC2 155 4532550 YP_886158.1 CDS MSMEG_1787 NC_008596.1 1869761 1870345 D RsbW protein 1869761..1870345 Mycobacterium smegmatis str. MC2 155 4535295 YP_886159.1 CDS MSMEG_1786 NC_008596.1 1870342 1870770 R identified by match to protein family HMM PF01740; STAS domain-containing protein complement(1870342..1870770) Mycobacterium smegmatis str. MC2 155 4537660 YP_886160.1 CDS MSMEG_1788 NC_008596.1 1871258 1871512 D hypothetical protein 1871258..1871512 Mycobacterium smegmatis str. MC2 155 4535306 YP_886161.1 CDS MSMEG_1789 NC_008596.1 1871520 1871675 D hypothetical protein 1871520..1871675 Mycobacterium smegmatis str. MC2 155 4533402 YP_886162.1 CDS MSMEG_1790 NC_008596.1 1871713 1871970 D hypothetical protein 1871713..1871970 Mycobacterium smegmatis str. MC2 155 4533058 YP_886163.1 CDS MSMEG_1791 NC_008596.1 1872145 1872453 D UsfY protein 1872145..1872453 Mycobacterium smegmatis str. MC2 155 4535363 YP_886164.1 CDS MSMEG_1792 NC_008596.1 1872508 1872858 R hypothetical protein complement(1872508..1872858) Mycobacterium smegmatis str. MC2 155 4534174 YP_886165.1 CDS MSMEG_1794 NC_008596.1 1872888 1873895 D identified by match to protein family HMM PF00296; dehydrogenase 1872888..1873895 Mycobacterium smegmatis str. MC2 155 4531905 YP_886166.1 CDS MSMEG_1793 NC_008596.1 1873863 1874426 R membrane protein complement(1873863..1874426) Mycobacterium smegmatis str. MC2 155 4532326 YP_886167.1 CDS MSMEG_1795 NC_008596.1 1874566 1875648 R identified by match to protein family HMM PF00107; 2-deoxy-scyllo-inosamine dehydrogenase complement(1874566..1875648) Mycobacterium smegmatis str. MC2 155 4536109 YP_886168.1 CDS MSMEG_1796 NC_008596.1 1875645 1877078 R identified by match to protein family HMM PF01266; membrane protein complement(1875645..1877078) Mycobacterium smegmatis str. MC2 155 4537113 YP_886169.1 CDS MSMEG_1797 NC_008596.1 1877075 1877791 R identified by match to protein family HMM PF00561; salicylate esterase complement(1877075..1877791) Mycobacterium smegmatis str. MC2 155 4533927 YP_886170.1 CDS MSMEG_1798 NC_008596.1 1877776 1879104 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator superfamily protein complement(1877776..1879104) Mycobacterium smegmatis str. MC2 155 4534910 YP_886171.1 CDS MSMEG_1799 NC_008596.1 1879301 1880209 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 1879301..1880209 Mycobacterium smegmatis str. MC2 155 4531865 YP_886172.1 CDS MSMEG_1800 NC_008596.1 1880234 1880365 R hypothetical protein complement(1880234..1880365) Mycobacterium smegmatis str. MC2 155 4533564 YP_886173.1 CDS MSMEG_1801 NC_008596.1 1880491 1880622 D hypothetical protein 1880491..1880622 Mycobacterium smegmatis str. MC2 155 4535257 YP_886174.1 CDS MSMEG_1802 NC_008596.1 1880724 1881143 D identified by match to protein family HMM PF06150; ChaB protein 1880724..1881143 Mycobacterium smegmatis str. MC2 155 4532008 YP_886175.1 CDS MSMEG_1803 NC_008596.1 1881247 1881663 D RsbW protein 1881247..1881663 Mycobacterium smegmatis str. MC2 155 4536851 YP_886176.1 CDS MSMEG_1804 NC_008596.1 1881660 1882412 D Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock; RNA polymerase sigma factor SigF 1881660..1882412 Mycobacterium smegmatis str. MC2 155 4537166 YP_886177.1 CDS MSMEG_1806 NC_008596.1 1882438 1882986 D hypothetical protein 1882438..1882986 Mycobacterium smegmatis str. MC2 155 4536189 YP_886178.1 CDS MSMEG_1805 NC_008596.1 1882976 1883332 R hypothetical protein complement(1882976..1883332) Mycobacterium smegmatis str. MC2 155 4534514 YP_886179.1 CDS MSMEG_1807 NC_008596.1 1883433 1885229 R identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; acetyl-/propionyl-coenzyme A carboxylase subunit alpha complement(1883433..1885229) Mycobacterium smegmatis str. MC2 155 4535301 YP_886180.1 CDS MSMEG_1808 NC_008596.1 1885624 1886034 R identified by match to protein family HMM PF02657; Fe-S metabolism associated SufE complement(1885624..1886034) Mycobacterium smegmatis str. MC2 155 4536635 YP_886181.1 CDS MSMEG_1809 NC_008596.1 1886037 1886924 R identified by match to protein family HMM PF00581; thiosulfate sulfurtransferase complement(1886037..1886924) Mycobacterium smegmatis str. MC2 155 4533598 YP_886182.1 CDS MSMEG_1810 NC_008596.1 1887074 1887283 R hypothetical protein complement(1887074..1887283) Mycobacterium smegmatis str. MC2 155 4531314 YP_886183.1 CDS maf NC_008596.1 1887457 1888092 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(1887457..1888092) Mycobacterium smegmatis str. MC2 155 4533330 YP_886184.1 CDS MSMEG_1812 NC_008596.1 1888189 1888473 R hypothetical protein complement(1888189..1888473) Mycobacterium smegmatis str. MC2 155 4531795 YP_886185.1 CDS MSMEG_1813 NC_008596.1 1888497 1890125 R identified by match to protein family HMM PF01039; propionyl-CoA carboxylase subunit beta complement(1888497..1890125) Mycobacterium smegmatis str. MC2 155 4536218 YP_886186.1 CDS MSMEG_1814 NC_008596.1 1890327 1890539 D hypothetical protein 1890327..1890539 Mycobacterium smegmatis str. MC2 155 4531467 YP_886187.1 CDS MSMEG_1815 NC_008596.1 1890966 1891139 R hypothetical protein complement(1890966..1891139) Mycobacterium smegmatis str. MC2 155 4537467 YP_886188.1 CDS MSMEG_1818 NC_008596.1 1892734 1893252 D identified by match to protein family HMM PF03703; membrane flanked domain-containing protein 1892734..1893252 Mycobacterium smegmatis str. MC2 155 4534655 YP_886189.1 CDS MSMEG_1817 NC_008596.1 1893207 1893878 R identified by match to protein family HMM PF04138; transmembrane protein complement(1893207..1893878) Mycobacterium smegmatis str. MC2 155 4535893 YP_886190.1 CDS purK NC_008596.1 1893955 1895181 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 1893955..1895181 Mycobacterium smegmatis str. MC2 155 4537150 YP_886191.1 CDS purE NC_008596.1 1895208 1895687 D identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit 1895208..1895687 Mycobacterium smegmatis str. MC2 155 4535830 YP_886192.1 CDS MSMEG_1821 NC_008596.1 1896033 1897202 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 1896033..1897202 Mycobacterium smegmatis str. MC2 155 4536750 YP_886193.1 CDS MSMEG_1822 NC_008596.1 1897225 1898037 D identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121; biotin-[acetyl-CoA-carboxylase] ligase 1897225..1898037 Mycobacterium smegmatis str. MC2 155 4533747 YP_886194.1 CDS MSMEG_1823 NC_008596.1 1898113 1898817 R identified by match to protein family HMM TIGR03089; hypothetical protein complement(1898113..1898817) Mycobacterium smegmatis str. MC2 155 4537073 YP_886195.1 CDS MSMEG_1824 NC_008596.1 1898840 1900321 R identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; LytR family transcriptional regulator complement(1898840..1900321) Mycobacterium smegmatis str. MC2 155 4534932 YP_886196.1 CDS rfbD NC_008596.1 1900308 1901291 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214; dTDP-4-dehydrorhamnose reductase 1900308..1901291 Mycobacterium smegmatis str. MC2 155 4533132 YP_886197.1 CDS MSMEG_1826 NC_008596.1 1901315 1902184 D identified by match to protein family HMM PF00535; dTDP-RhA:a-D-GlcNAc-diphosphoryl polyprenol, a-3-L-rhamnosyl transferase 1901315..1902184 Mycobacterium smegmatis str. MC2 155 4534486 YP_886198.1 CDS MSMEG_1827 NC_008596.1 1903244 1903792 R identified by match to protein family HMM PF00293; hydrolase, nudix family protein complement(1903244..1903792) Mycobacterium smegmatis str. MC2 155 4537038 YP_886199.1 CDS MSMEG_1829 NC_008596.1 1903789 1905153 R catalyzes the addition of gamma linked glutamate to 7,8-didemethyl-8-hydroxy-5-deazariboflavin coenzyme F420-0); F420-0--gamma-glutamyl ligase complement(1903789..1905153) Mycobacterium smegmatis str. MC2 155 4536997 YP_886200.1 CDS cofD NC_008596.1 1905150 1906133 R catalyzes the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP from actyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO); LPPG:FO 2-phospho-L-lactate transferase complement(1905150..1906133) Mycobacterium smegmatis str. MC2 155 4535924 YP_886201.1 CDS MSMEG_1831 NC_008596.1 1906425 1906814 D identified by match to protein family HMM PF02467; transcription factor WhiB 1906425..1906814 Mycobacterium smegmatis str. MC2 155 4532476 YP_886202.1 CDS MSMEG_1832 NC_008596.1 1906855 1907319 R hypothetical protein complement(1906855..1907319) Mycobacterium smegmatis str. MC2 155 4534130 YP_886203.1 CDS MSMEG_1833 NC_008596.1 1907407 1907826 D hypothetical protein 1907407..1907826 Mycobacterium smegmatis str. MC2 155 4536163 YP_886204.1 CDS manB NC_008596.1 1907957 1909375 D converts mannose-6-phosphate to mannose-1-phosphate; the resulting product is then converted to GDP-mannose by ManC which is then used in the synthesis of mannose-containing glycoconjugates that are important for mediating entry into host cells; phosphomannomutase 1907957..1909375 Mycobacterium smegmatis str. MC2 155 4531690 YP_886205.1 CDS MSMEG_1835 NC_008596.1 1909372 1910454 D TobH protein 1909372..1910454 Mycobacterium smegmatis str. MC2 155 4535054 YP_886206.1 CDS manA NC_008596.1 1910546 1911685 D identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218; mannose-6-phosphate isomerase 1910546..1911685 Mycobacterium smegmatis str. MC2 155 4537472 YP_886207.1 CDS MSMEG_1837 NC_008596.1 1911718 1913127 R hypothetical protein complement(1911718..1913127) Mycobacterium smegmatis str. MC2 155 4536342 YP_886208.1 CDS MSMEG_1838 NC_008596.1 1913166 1914650 D identified by match to protein family HMM PF00324; cationic amino acid transporter 1913166..1914650 Mycobacterium smegmatis str. MC2 155 4533492 YP_886209.1 CDS MSMEG_1839 NC_008596.1 1914807 1916039 D identified by match to protein family HMM PF00487; alkane 1-monooxygenase 1914807..1916039 Mycobacterium smegmatis str. MC2 155 4535199 YP_886210.1 CDS MSMEG_1840 NC_008596.1 1916036 1916209 D identified by match to protein family HMM PF00301; rubredoxin 1916036..1916209 Mycobacterium smegmatis str. MC2 155 4530818 YP_886211.1 CDS MSMEG_1841 NC_008596.1 1916206 1916388 D identified by match to protein family HMM PF00301; rubredoxin 1916206..1916388 Mycobacterium smegmatis str. MC2 155 4535184 YP_886212.1 CDS MSMEG_1842 NC_008596.1 1916396 1917121 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1916396..1917121 Mycobacterium smegmatis str. MC2 155 4536677 YP_886213.1 CDS MSMEG_1844 NC_008596.1 1918791 1919315 R hypothetical protein complement(1918791..1919315) Mycobacterium smegmatis str. MC2 155 4531941 YP_886214.1 CDS MSMEG_1845 NC_008596.1 1919373 1919999 R identified by match to protein family HMM PF03458; hypothetical protein complement(1919373..1919999) Mycobacterium smegmatis str. MC2 155 4534044 YP_886215.1 CDS MSMEG_1846 NC_008596.1 1920009 1921031 R identified by match to protein family HMM PF03916; polysulfide reductase NrfD complement(1920009..1921031) Mycobacterium smegmatis str. MC2 155 4537223 YP_886216.1 CDS MSMEG_1847 NC_008596.1 1921055 1921969 R identified by match to protein family HMM PF00037; 4Fe-4S ferredoxin complement(1921055..1921969) Mycobacterium smegmatis str. MC2 155 4531573 YP_886217.1 CDS selB NC_008596.1 1925424 1927136 R identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00475; selenocysteine-specific translation elongation factor complement(1925424..1927136) Mycobacterium smegmatis str. MC2 155 4531658 YP_886218.1 CDS selA NC_008596.1 1927124 1928404 R catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase complement(1927124..1928404) Mycobacterium smegmatis str. MC2 155 4533460 YP_886219.1 CDS selD NC_008596.1 1928562 1929554 D identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00476; selenide, water dikinase 1928562..1929554 Mycobacterium smegmatis str. MC2 155 4531099 YP_886220.1 CDS MSMEG_1854 NC_008596.1 1931586 1932791 D identified by match to protein family HMM PF00004; valosin containing protein-1 1931586..1932791 Mycobacterium smegmatis str. MC2 155 4533178 YP_886221.1 CDS MSMEG_1855 NC_008596.1 1932788 1933810 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 1932788..1933810 Mycobacterium smegmatis str. MC2 155 4531493 YP_886222.1 CDS MSMEG_1856 NC_008596.1 1933836 1934534 R hypothetical protein complement(1933836..1934534) Mycobacterium smegmatis str. MC2 155 4531115 YP_886223.1 CDS MSMEG_1857 NC_008596.1 1934812 1936173 D identified by match to protein family HMM PF00665; transposase IstA protein 1934812..1936173 Mycobacterium smegmatis str. MC2 155 4535557 YP_886224.1 CDS MSMEG_1858 NC_008596.1 1936170 1937024 D identified by match to protein family HMM PF01695; transposition helper protein 1936170..1937024 Mycobacterium smegmatis str. MC2 155 4533569 YP_886225.1 CDS MSMEG_1859 NC_008596.1 1937032 1937322 R hypothetical protein complement(1937032..1937322) Mycobacterium smegmatis str. MC2 155 4537610 YP_886226.1 CDS MSMEG_1860 NC_008596.1 1937342 1937530 R hypothetical protein complement(1937342..1937530) Mycobacterium smegmatis str. MC2 155 4534945 YP_886227.1 CDS MSMEG_1861 NC_008596.1 1937660 1938472 R hypothetical protein complement(1937660..1938472) Mycobacterium smegmatis str. MC2 155 4530949 YP_886228.1 CDS MSMEG_1862 NC_008596.1 1938555 1939568 R identified by match to protein family HMM PF00665; transposase complement(1938555..1939568) Mycobacterium smegmatis str. MC2 155 4532013 YP_886229.1 CDS MSMEG_1863 NC_008596.1 1939568 1939957 R transposase complement(1939568..1939957) Mycobacterium smegmatis str. MC2 155 4537515 YP_886230.1 CDS MSMEG_1864 NC_008596.1 1940145 1940354 R transposase complement(1940145..1940354) Mycobacterium smegmatis str. MC2 155 4536246 YP_886231.1 CDS MSMEG_1865 NC_008596.1 1940497 1941963 D identified by similarity to GP:2935133; match to protein family HMM PF01609; IS1549, transposase 1940497..1941963 Mycobacterium smegmatis str. MC2 155 4533835 YP_886232.1 CDS MSMEG_1866 NC_008596.1 1942190 1943023 R identified by match to protein family HMM PF00665; transposase B complement(1942190..1943023) Mycobacterium smegmatis str. MC2 155 4534158 YP_886233.1 CDS MSMEG_1867 NC_008596.1 1943053 1943334 R identified by match to protein family HMM PF01527; transposase complement(1943053..1943334) Mycobacterium smegmatis str. MC2 155 4535232 YP_886234.1 CDS MSMEG_1868 NC_008596.1 1943545 1943838 R hypothetical protein complement(1943545..1943838) Mycobacterium smegmatis str. MC2 155 4533677 YP_886235.1 CDS MSMEG_1869 NC_008596.1 1943875 1944624 R hypothetical protein complement(1943875..1944624) Mycobacterium smegmatis str. MC2 155 4536236 YP_886236.1 CDS MSMEG_1870 NC_008596.1 1944699 1948496 R hypothetical protein complement(1944699..1948496) Mycobacterium smegmatis str. MC2 155 4535009 YP_886237.1 CDS MSMEG_1871 NC_008596.1 1948496 1948774 R hypothetical protein complement(1948496..1948774) Mycobacterium smegmatis str. MC2 155 4533510 YP_886238.1 CDS MSMEG_1872 NC_008596.1 1948794 1949663 R identified by match to protein family HMM PF06013; hypothetical protein complement(1948794..1949663) Mycobacterium smegmatis str. MC2 155 4532258 YP_886239.1 CDS MSMEG_1873 NC_008596.1 1949753 1950385 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1949753..1950385 Mycobacterium smegmatis str. MC2 155 4537673 YP_886240.1 CDS mtrA NC_008596.1 1950437 1951123 D identified by similarity to SP:Q50447; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator MtrA 1950437..1951123 Mycobacterium smegmatis str. MC2 155 4531408 YP_886241.1 CDS MSMEG_1875 NC_008596.1 1951266 1952852 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase MtrB 1951266..1952852 Mycobacterium smegmatis str. MC2 155 4532306 YP_886242.1 CDS MSMEG_1876 NC_008596.1 1952849 1954606 D lipoprotein LpqB 1952849..1954606 Mycobacterium smegmatis str. MC2 155 4533110 YP_886243.1 CDS MSMEG_1877 NC_008596.1 1954646 1955299 D hypothetical protein 1954646..1955299 Mycobacterium smegmatis str. MC2 155 4533446 YP_886244.1 CDS MSMEG_1878 NC_008596.1 1955596 1956288 D identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; S30AE family protein 1955596..1956288 Mycobacterium smegmatis str. MC2 155 4532586 YP_886245.1 CDS MSMEG_1879 NC_008596.1 1956363 1956488 R hypothetical protein complement(1956363..1956488) Mycobacterium smegmatis str. MC2 155 4534524 YP_886246.1 CDS secA NC_008596.1 1956525 1959386 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 1956525..1959386 Mycobacterium smegmatis str. MC2 155 4536291 YP_886247.1 CDS MSMEG_1880 NC_008596.1 1959383 1959925 R hypothetical protein complement(1959383..1959925) Mycobacterium smegmatis str. MC2 155 4534322 YP_886248.1 CDS MSMEG_1882 NC_008596.1 1960095 1961504 D identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946; acyltransferase 1960095..1961504 Mycobacterium smegmatis str. MC2 155 4537006 YP_886249.1 CDS MSMEG_1883 NC_008596.1 1961567 1963423 D identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842; glycine betaine transporter OpuD 1961567..1963423 Mycobacterium smegmatis str. MC2 155 4535489 YP_886250.1 CDS MSMEG_1884 NC_008596.1 1963433 1963930 D hypothetical protein 1963433..1963930 Mycobacterium smegmatis str. MC2 155 4533265 YP_886251.1 CDS MSMEG_1885 NC_008596.1 1963982 1965133 D identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; 2Fe-2S iron-sulfur cluster binding domain-containing protein 1963982..1965133 Mycobacterium smegmatis str. MC2 155 4534362 YP_886252.1 CDS MSMEG_1886 NC_008596.1 1965203 1966459 D identified by match to protein family HMM PF00487; Fatty acid desaturase 1965203..1966459 Mycobacterium smegmatis str. MC2 155 4533038 YP_886253.1 CDS MSMEG_1887 NC_008596.1 1966654 1967082 D hypothetical protein 1966654..1967082 Mycobacterium smegmatis str. MC2 155 4532796 YP_886254.1 CDS MSMEG_1888 NC_008596.1 1967099 1968031 R identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027; methyltransferase complement(1967099..1968031) Mycobacterium smegmatis str. MC2 155 4533324 YP_886255.1 CDS MSMEG_1889 NC_008596.1 1968124 1969131 R identified by match to protein family HMM PF03193; ribosome small subunit-dependent GTPase RsgA complement(1968124..1969131) Mycobacterium smegmatis str. MC2 155 4536057 YP_886256.1 CDS aroA NC_008596.1 1969128 1970459 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(1969128..1970459) Mycobacterium smegmatis str. MC2 155 4534632 YP_886257.1 CDS MSMEG_1891 NC_008596.1 1970515 1971303 D identified by match to protein family HMM PF02586; hypothetical protein 1970515..1971303 Mycobacterium smegmatis str. MC2 155 4536808 YP_886258.1 CDS MSMEG_1892 NC_008596.1 1971300 1972799 D identified by match to protein family HMM PF05175; transferase 1971300..1972799 Mycobacterium smegmatis str. MC2 155 4535549 YP_886259.1 CDS MSMEG_1893 NC_008596.1 1972807 1973613 R UbiE/COQ5 methyltransferase complement(1972807..1973613) Mycobacterium smegmatis str. MC2 155 4532666 YP_886260.1 CDS MSMEG_1894 NC_008596.1 1973653 1974519 R identified by match to protein family HMM PF00106; short chain dehydrogenase complement(1973653..1974519) Mycobacterium smegmatis str. MC2 155 4535453 YP_886261.1 CDS MSMEG_1895 NC_008596.1 1974521 1975435 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; HTH-type transcriptional regulator AlsR complement(1974521..1975435) Mycobacterium smegmatis str. MC2 155 4531448 YP_886262.1 CDS MSMEG_1896 NC_008596.1 1975509 1976741 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 1975509..1976741 Mycobacterium smegmatis str. MC2 155 4533180 YP_886263.1 CDS pcaD NC_008596.1 1976738 1977514 D identified by match to protein family HMM PF00561; match to protein family HMM TIGR02427; 3-oxoadipate enol-lactonase 1976738..1977514 Mycobacterium smegmatis str. MC2 155 4533395 YP_886264.1 CDS MSMEG_1898 NC_008596.1 1977511 1978308 D identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429; succinyl-CoA:3-ketoacid-coenzyme A transferase 1 1977511..1978308 Mycobacterium smegmatis str. MC2 155 4531508 YP_886265.1 CDS MSMEG_1899 NC_008596.1 1978305 1978955 D identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428; succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B 1978305..1978955 Mycobacterium smegmatis str. MC2 155 4536934 YP_886266.1 CDS MSMEG_1900 NC_008596.1 1978960 1979517 R identified by match to protein family HMM PF02557; D-alanyl-D-alanine carboxypeptidase complement(1978960..1979517) Mycobacterium smegmatis str. MC2 155 4531765 YP_886267.1 CDS MSMEG_1901 NC_008596.1 1979558 1982224 R identified by match to protein family HMM PF00196; match to protein family HMM PF07721; DNA-binding HTH domain-containing protein complement(1979558..1982224) Mycobacterium smegmatis str. MC2 155 4533258 YP_886268.1 CDS MSMEG_1902 NC_008596.1 1982232 1983185 R identified by match to protein family HMM PF00126; transcriptional regulator complement(1982232..1983185) Mycobacterium smegmatis str. MC2 155 4533296 YP_886269.1 CDS MSMEG_1903 NC_008596.1 1983261 1985660 R identified by match to protein family HMM PF02515; caib/baif family protein complement(1983261..1985660) Mycobacterium smegmatis str. MC2 155 4533725 YP_886270.1 CDS MSMEG_1904 NC_008596.1 1985666 1986859 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase complement(1985666..1986859) Mycobacterium smegmatis str. MC2 155 4531881 YP_886271.1 CDS MSMEG_1905 NC_008596.1 1986861 1987976 R identified by match to protein family HMM PF00441; match to protein family HMM PF02771; acyl-CoA dehydrogenase complement(1986861..1987976) Mycobacterium smegmatis str. MC2 155 4530879 YP_886272.1 CDS MSMEG_1906 NC_008596.1 1988141 1990903 R identified by match to protein family HMM PF00106; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF07729; match to protein family HMM PF08021; toluate 1,2-dioxygenase electron transfer component complement(1988141..1990903) Mycobacterium smegmatis str. MC2 155 4537180 YP_886273.1 CDS MSMEG_1907 NC_008596.1 1990913 1991428 R identified by match to protein family HMM PF00866; toluate 1,2-dioxygenase subunit beta complement(1990913..1991428) Mycobacterium smegmatis str. MC2 155 4531380 YP_886274.1 CDS MSMEG_1908 NC_008596.1 1991430 1992794 R identified by match to protein family HMM PF00355; match to protein family HMM PF00848; benzoate 1,2-dioxygenase subunit alpha complement(1991430..1992794) Mycobacterium smegmatis str. MC2 155 4533746 YP_886275.1 CDS MSMEG_1909 NC_008596.1 1993004 1993930 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; HTH-type transcriptional regulator YnfL 1993004..1993930 Mycobacterium smegmatis str. MC2 155 4535242 YP_886276.1 CDS MSMEG_1910 NC_008596.1 1993927 1995030 D identified by match to protein family HMM PF01188; match to protein family HMM PF02746; muconate cycloisomerase 1993927..1995030 Mycobacterium smegmatis str. MC2 155 4533008 YP_886277.1 CDS catA NC_008596.1 1995064 1995957 D identified by match to protein family HMM PF00775; match to protein family HMM PF04444; match to protein family HMM TIGR02438; catechol 1,2-dioxygenase 1995064..1995957 Mycobacterium smegmatis str. MC2 155 4531171 YP_886278.1 CDS MSMEG_1912 NC_008596.1 1995965 1996249 D identified by match to protein family HMM PF02426; muconolactone delta-isomerase 1 1995965..1996249 Mycobacterium smegmatis str. MC2 155 4534431 YP_886279.1 CDS ybaK NC_008596.1 1996254 1996745 R identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011; hypothetical protein complement(1996254..1996745) Mycobacterium smegmatis str. MC2 155 4533464 YP_886280.1 CDS MSMEG_1914 NC_008596.1 1997014 1997673 D identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; match to protein family HMM TIGR02947; RNA polymerase sigma-70 factor, family protein 1997014..1997673 Mycobacterium smegmatis str. MC2 155 4534089 YP_886281.1 CDS MSMEG_1915 NC_008596.1 1997670 1997975 D identified by match to protein family HMM TIGR02949; anti-sigma factor, family protein 1997670..1997975 Mycobacterium smegmatis str. MC2 155 4535149 YP_886282.1 CDS MSMEG_1916 NC_008596.1 1997988 1998062 R hypothetical protein complement(1997988..1998062) Mycobacterium smegmatis str. MC2 155 4536798 YP_886283.1 CDS MSMEG_1917 NC_008596.1 1998180 1998401 D identified by match to protein family HMM PF00364; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 1998180..1998401 Mycobacterium smegmatis str. MC2 155 4537339 YP_886284.1 CDS MSMEG_1918 NC_008596.1 1998476 1999975 D identified by match to protein family HMM PF02518; match to protein family HMM PF07568; sensor histidine kinase 1998476..1999975 Mycobacterium smegmatis str. MC2 155 4535345 YP_886285.1 CDS MSMEG_1919 NC_008596.1 2000143 2000397 R identified by match to protein family HMM PF02467; transcription factor WhiB complement(2000143..2000397) Mycobacterium smegmatis str. MC2 155 4534879 YP_886286.1 CDS MSMEG_1920 NC_008596.1 2000646 2001608 R identified by match to protein family HMM PF00781; diacylglycerol kinase catalytic subunit complement(2000646..2001608) Mycobacterium smegmatis str. MC2 155 4531807 YP_886287.1 CDS MSMEG_1921 NC_008596.1 2001654 2002043 R identified by match to protein family HMM PF02810; SecC motif-containing protein complement(2001654..2002043) Mycobacterium smegmatis str. MC2 155 4533019 YP_886288.1 CDS aroQ NC_008596.1 2002144 2002581 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 2002144..2002581 Mycobacterium smegmatis str. MC2 155 4532290 YP_886289.1 CDS MSMEG_1923 NC_008596.1 2002578 2002958 D membrane protein 2002578..2002958 Mycobacterium smegmatis str. MC2 155 4533476 YP_886290.1 CDS MSMEG_1924 NC_008596.1 2002965 2003444 R identified by match to protein family HMM PF00583; N-acetyltransferase Ats1 complement(2002965..2003444) Mycobacterium smegmatis str. MC2 155 4534149 YP_886291.1 CDS MSMEG_1925 NC_008596.1 2003441 2004532 R identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543; isochorismate synthase DhbC complement(2003441..2004532) Mycobacterium smegmatis str. MC2 155 4535525 YP_886292.1 CDS MSMEG_1926 NC_008596.1 2004529 2005140 R forms a homodimer in Mycobacterium tuberculosis; belongs to the dPGM superfamily; acid phosphatase complement(2004529..2005140) Mycobacterium smegmatis str. MC2 155 4532729 YP_886293.1 CDS MSMEG_1927 NC_008596.1 2005199 2005996 D identified by match to protein family HMM PF01656; cobyrinic acid a,c-diamide synthase 2005199..2005996 Mycobacterium smegmatis str. MC2 155 4535521 YP_886294.1 CDS MSMEG_1928 NC_008596.1 2006011 2006712 D identified by match to protein family HMM PF00481; regulatory protein 2006011..2006712 Mycobacterium smegmatis str. MC2 155 4537738 YP_886295.1 CDS MSMEG_1929 NC_008596.1 2006724 2007941 R hypothetical protein complement(2006724..2007941) Mycobacterium smegmatis str. MC2 155 4533740 YP_886296.1 CDS MSMEG_1930 NC_008596.1 2007957 2009465 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase complement(2007957..2009465) Mycobacterium smegmatis str. MC2 155 4534321 YP_886297.1 CDS MSMEG_1931 NC_008596.1 2009771 2010469 D hypothetical protein 2009771..2010469 Mycobacterium smegmatis str. MC2 155 4534509 YP_886298.1 CDS MSMEG_1933 NC_008596.1 2010381 2010563 D hypothetical protein 2010381..2010563 Mycobacterium smegmatis str. MC2 155 4531673 YP_886299.1 CDS MSMEG_1932 NC_008596.1 2010476 2011300 R MmpS3 protein complement(2010476..2011300) Mycobacterium smegmatis str. MC2 155 4537194 YP_886300.1 CDS MSMEG_1934 NC_008596.1 2011602 2011841 D ATP-binding protein 2011602..2011841 Mycobacterium smegmatis str. MC2 155 4536626 YP_886301.1 CDS MSMEG_1935 NC_008596.1 2011850 2012509 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(2011850..2012509) Mycobacterium smegmatis str. MC2 155 4537552 YP_886302.1 CDS MSMEG_1936 NC_008596.1 2012755 2013789 D hypothetical protein 2012755..2013789 Mycobacterium smegmatis str. MC2 155 4537495 YP_886303.1 CDS MSMEG_1937 NC_008596.1 2013931 2015121 D The proteins in this cluster have high sequence similarity to MoeB and are possibly involved in the synthesis of molybdopterin, but there has been no biochemical or physiological characterization. There is also no genetic linkage to other molybdopterin cofactor synthesis proteins. These proteins are similar to a Pseudomonas stutzeri protein which is essential to pyridine-2,6-bis(thiocarboxylic acid) synthesis that possibly activates a substrate by adenylation; molybdopterin biosynthesis-like protein MoeZ 2013931..2015121 Mycobacterium smegmatis str. MC2 155 4537381 YP_886304.1 CDS MSMEG_1938 NC_008596.1 2015158 2016012 D identified by match to protein family HMM TIGR02569; hypothetical protein 2015158..2016012 Mycobacterium smegmatis str. MC2 155 4536349 YP_886305.1 CDS MSMEG_1939 NC_008596.1 2016090 2016386 R identified by match to protein family HMM PF01035; 6-O-methylguanine DNA methyltransferase complement(2016090..2016386) Mycobacterium smegmatis str. MC2 155 4536670 YP_886306.1 CDS MSMEG_1940 NC_008596.1 2016388 2017149 R identified by match to protein family HMM PF00561; alpha/beta hydrolase complement(2016388..2017149) Mycobacterium smegmatis str. MC2 155 4536566 YP_886307.1 CDS MSMEG_1941 NC_008596.1 2017285 2020422 D identified by match to protein family HMM PF00580; helicase, UvrD/Rep family protein 2017285..2020422 Mycobacterium smegmatis str. MC2 155 4534301 YP_886308.1 CDS MSMEG_1943 NC_008596.1 2020443 2023706 D identified by match to protein family HMM PF00580; ATP-dependent DNA helicase 2020443..2023706 Mycobacterium smegmatis str. MC2 155 4532773 YP_886309.1 CDS MSMEG_1942 NC_008596.1 2023699 2024412 R identified by match to protein family HMM PF01988; integral membrane protein complement(2023699..2024412) Mycobacterium smegmatis str. MC2 155 4532129 YP_886310.1 CDS MSMEG_1944 NC_008596.1 2024543 2024932 R membrane protein complement(2024543..2024932) Mycobacterium smegmatis str. MC2 155 4533081 YP_886311.1 CDS MSMEG_1945 NC_008596.1 2025002 2026096 D identified by match to protein family HMM PF02254; match to protein family HMM PF07885; ion channel membrane protein 2025002..2026096 Mycobacterium smegmatis str. MC2 155 4537218 YP_886312.1 CDS nudC NC_008596.1 2026093 2027028 D can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 2026093..2027028 Mycobacterium smegmatis str. MC2 155 4531751 YP_886313.1 CDS MSMEG_1947 NC_008596.1 2027051 2027299 R identified by match to protein family HMM PF00462; match to protein family HMM TIGR02200; hypothetical protein complement(2027051..2027299) Mycobacterium smegmatis str. MC2 155 4537304 YP_886314.1 CDS MSMEG_1948 NC_008596.1 2027434 2027625 R hypothetical protein complement(2027434..2027625) Mycobacterium smegmatis str. MC2 155 4535624 YP_886315.1 CDS MSMEG_1949 NC_008596.1 2027614 2027757 D hypothetical protein 2027614..2027757 Mycobacterium smegmatis str. MC2 155 4532247 YP_886316.1 CDS MSMEG_1950 NC_008596.1 2027837 2028406 D identified by match to protein family HMM PF05532; hypothetical protein 2027837..2028406 Mycobacterium smegmatis str. MC2 155 4533782 YP_886317.1 CDS MSMEG_1951 NC_008596.1 2028409 2029071 D hypothetical protein 2028409..2029071 Mycobacterium smegmatis str. MC2 155 4533361 YP_886318.1 CDS MSMEG_1952 NC_008596.1 2029125 2031275 D identified by match to protein family HMM PF00570; match to protein family HMM PF00580; ATP-dependent DNA helicase 2029125..2031275 Mycobacterium smegmatis str. MC2 155 4535435 YP_886319.1 CDS MSMEG_1953 NC_008596.1 2031777 2032088 D identified by match to protein family HMM PF02467; transcription factor WhiB 2031777..2032088 Mycobacterium smegmatis str. MC2 155 4532108 YP_886320.1 CDS MSMEG_1954 NC_008596.1 2032190 2033509 R identified by match to protein family HMM PF03109; ABC transporter complement(2032190..2033509) Mycobacterium smegmatis str. MC2 155 4534070 YP_886321.1 CDS MSMEG_1956 NC_008596.1 2033351 2033593 D hypothetical protein 2033351..2033593 Mycobacterium smegmatis str. MC2 155 4532095 YP_886322.1 CDS MSMEG_1955 NC_008596.1 2033567 2034406 R hypothetical protein complement(2033567..2034406) Mycobacterium smegmatis str. MC2 155 4537265 YP_886323.1 CDS MSMEG_1957 NC_008596.1 2034464 2035873 R hypothetical protein complement(2034464..2035873) Mycobacterium smegmatis str. MC2 155 4535909 YP_886324.1 CDS MSMEG_1958 NC_008596.1 2035981 2037018 D PDZ domain-containing protein 2035981..2037018 Mycobacterium smegmatis str. MC2 155 4533606 YP_886325.1 CDS MSMEG_1959 NC_008596.1 2037115 2040126 D identified by match to protein family HMM PF03699; hypothetical protein 2037115..2040126 Mycobacterium smegmatis str. MC2 155 4537390 YP_886326.1 CDS MSMEG_1960 NC_008596.1 2040307 2040828 D hypothetical protein 2040307..2040828 Mycobacterium smegmatis str. MC2 155 4532098 YP_886327.1 CDS MSMEG_1961 NC_008596.1 2040821 2041996 D hypothetical protein 2040821..2041996 Mycobacterium smegmatis str. MC2 155 4535763 YP_886328.1 CDS MSMEG_1962 NC_008596.1 2041993 2042538 D hypothetical protein 2041993..2042538 Mycobacterium smegmatis str. MC2 155 4533259 YP_886329.1 CDS MSMEG_1963 NC_008596.1 2042589 2045987 D identified by match to protein family HMM PF00486; match to protein family HMM PF03704; transcriptional regulatory protein 2042589..2045987 Mycobacterium smegmatis str. MC2 155 4534912 YP_886330.1 CDS MSMEG_1964 NC_008596.1 2046110 2047510 D identified by match to protein family HMM PF01565; mitomycin radical oxidase 2046110..2047510 Mycobacterium smegmatis str. MC2 155 4534546 YP_886331.1 CDS MSMEG_1966 NC_008596.1 2048141 2048551 R hypothetical protein complement(2048141..2048551) Mycobacterium smegmatis str. MC2 155 4532815 YP_886332.1 CDS MSMEG_1967 NC_008596.1 2048646 2049275 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2048646..2049275 Mycobacterium smegmatis str. MC2 155 4536779 YP_886333.1 CDS MSMEG_1968 NC_008596.1 2049610 2050320 R identified by match to protein family HMM PF00106; oxidoreductase complement(2049610..2050320) Mycobacterium smegmatis str. MC2 155 4530912 YP_886334.1 CDS MSMEG_1969 NC_008596.1 2050405 2050770 D identified by match to protein family HMM PF00376; MerR family transcriptional regulator 2050405..2050770 Mycobacterium smegmatis str. MC2 155 4536156 YP_886335.1 CDS MSMEG_1970 NC_008596.1 2050786 2052537 R identified by match to protein family HMM PF01590; match to protein family HMM PF02954; sigma factor complement(2050786..2052537) Mycobacterium smegmatis str. MC2 155 4531192 YP_886336.1 CDS MSMEG_1971 NC_008596.1 2052753 2054381 D identified by match to protein family HMM PF02332; propane monooxygenase hydroxylase large subunit 2052753..2054381 Mycobacterium smegmatis str. MC2 155 4533884 YP_886337.1 CDS MSMEG_1972 NC_008596.1 2054473 2055519 D identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; methane monooxygenase component C 2054473..2055519 Mycobacterium smegmatis str. MC2 155 4531249 YP_886338.1 CDS MSMEG_1974 NC_008596.1 2056647 2056991 D propane monooxygenase coupling protein 2056647..2056991 Mycobacterium smegmatis str. MC2 155 4534884 YP_886339.1 CDS MSMEG_1975 NC_008596.1 2057028 2058071 D identified by match to protein family HMM PF04909; amidohydrolase 2057028..2058071 Mycobacterium smegmatis str. MC2 155 4532308 YP_886340.1 CDS MSMEG_1976 NC_008596.1 2058068 2058811 D identified by match to protein family HMM PF01883; hypothetical protein 2058068..2058811 Mycobacterium smegmatis str. MC2 155 4533705 YP_886341.1 CDS MSMEG_1977 NC_008596.1 2058811 2059836 D identified by match to protein family HMM PF00107; alcohol dehydrogenase 2058811..2059836 Mycobacterium smegmatis str. MC2 155 4532957 YP_886342.1 CDS groEL NC_008596.1 2059864 2061513 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; the rhizobia and high GC gram-positive bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the R. leguminosarum protein in this cluster is transcribed under anaerobic conditions and is not necessary for growth; molecular chaperone GroEL 2059864..2061513 Mycobacterium smegmatis str. MC2 155 4530985 YP_886343.1 CDS MSMEG_1979 NC_008596.1 2061539 2061880 D identified by match to protein family HMM PF03992; antibiotic biosynthesis monooxygenase 2061539..2061880 Mycobacterium smegmatis str. MC2 155 4531365 YP_886344.1 CDS MSMEG_1980 NC_008596.1 2061887 2063062 R identified by match to protein family HMM PF01494; hypothetical protein complement(2061887..2063062) Mycobacterium smegmatis str. MC2 155 4532195 YP_886345.1 CDS MSMEG_1981 NC_008596.1 2063059 2063547 R identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026; hypothetical protein complement(2063059..2063547) Mycobacterium smegmatis str. MC2 155 4535903 YP_886346.1 CDS MSMEG_1982 NC_008596.1 2063768 2065315 D identified by match to protein family HMM PF00501; acyl-CoA synthetase 2063768..2065315 Mycobacterium smegmatis str. MC2 155 4532493 YP_886347.1 CDS MSMEG_1983 NC_008596.1 2065325 2066677 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator family protein transporter complement(2065325..2066677) Mycobacterium smegmatis str. MC2 155 4536948 YP_886348.1 CDS MSMEG_1984 NC_008596.1 2066756 2067646 R identified by match to protein family HMM PF00561; haloacetate dehalogenase H-1 complement(2066756..2067646) Mycobacterium smegmatis str. MC2 155 4532647 YP_886349.1 CDS MSMEG_1985 NC_008596.1 2067763 2068695 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 2067763..2068695 Mycobacterium smegmatis str. MC2 155 4532305 YP_886350.1 CDS MSMEG_1986 NC_008596.1 2068955 2070055 D identified by similarity to SP:Q51945; match to protein family HMM PF00180; match to protein family HMM TIGR02089; tartrate dehydrogenase 2068955..2070055 Mycobacterium smegmatis str. MC2 155 4536076 YP_886351.1 CDS MSMEG_1987 NC_008596.1 2070195 2070575 D hypothetical protein 2070195..2070575 Mycobacterium smegmatis str. MC2 155 4533684 YP_886352.1 CDS MSMEG_1988 NC_008596.1 2070610 2071146 D hypothetical protein 2070610..2071146 Mycobacterium smegmatis str. MC2 155 4531306 YP_886353.1 CDS MSMEG_1989 NC_008596.1 2071147 2072145 D identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; phenoxybenzoate dioxygenase subunit beta 2071147..2072145 Mycobacterium smegmatis str. MC2 155 4536491 YP_886354.1 CDS MSMEG_1990 NC_008596.1 2072174 2073247 D hypothetical protein 2072174..2073247 Mycobacterium smegmatis str. MC2 155 4531185 YP_886355.1 CDS MSMEG_1991 NC_008596.1 2073322 2074476 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; isovaleryl-CoA dehydrogenase 2073322..2074476 Mycobacterium smegmatis str. MC2 155 4531888 YP_886356.1 CDS MSMEG_1992 NC_008596.1 2074476 2075642 D identified by match to protein family HMM PF02515; L-carnitine dehydratase/bile acid-inducible protein F 2074476..2075642 Mycobacterium smegmatis str. MC2 155 4533440 YP_886357.1 CDS MSMEG_1993 NC_008596.1 2075672 2076505 D identified by match to protein family HMM PF01575; MaoC like domain-containing protein 2075672..2076505 Mycobacterium smegmatis str. MC2 155 4536160 YP_886358.1 CDS MSMEG_1994 NC_008596.1 2076502 2076633 D HpcH/HpaI aldolase 2076502..2076633 Mycobacterium smegmatis str. MC2 155 4533372 YP_886359.1 CDS MSMEG_1995 NC_008596.1 2076671 2077354 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; transcriptional regulator MdcY family protein complement(2076671..2077354) Mycobacterium smegmatis str. MC2 155 4535828 YP_886360.1 CDS MSMEG_1996 NC_008596.1 2077513 2078376 D identified by match to protein family HMM PF00296; N5,N10- methylenetetrahydromethanopterin reductase-related protein 2077513..2078376 Mycobacterium smegmatis str. MC2 155 4533800 YP_886361.1 CDS MSMEG_1997 NC_008596.1 2078514 2080274 D N-acyl-D-glutamate amidohydrolase 2078514..2080274 Mycobacterium smegmatis str. MC2 155 4537224 YP_886362.1 CDS MSMEG_1998 NC_008596.1 2080271 2081164 D identified by match to protein family HMM PF00561; alpha/beta hydrolase 2080271..2081164 Mycobacterium smegmatis str. MC2 155 4531827 YP_886363.1 CDS MSMEG_1999 NC_008596.1 2081235 2081378 R hypothetical protein complement(2081235..2081378) Mycobacterium smegmatis str. MC2 155 4536983 YP_886364.1 CDS MSMEG_2000 NC_008596.1 2081621 2082070 R hypothetical protein complement(2081621..2082070) Mycobacterium smegmatis str. MC2 155 4532223 YP_886365.1 CDS MSMEG_2001 NC_008596.1 2082169 2082831 R identified by match to protein family HMM PF00083; sugar transporter complement(2082169..2082831) Mycobacterium smegmatis str. MC2 155 4532707 YP_886366.1 CDS MSMEG_2002 NC_008596.1 2082987 2083688 D identified by similarity to GP:150004; match to protein family HMM PF07929; IS1096, tnpR protein 2082987..2083688 Mycobacterium smegmatis str. MC2 155 4536135 YP_886367.1 CDS MSMEG_2003 NC_008596.1 2083696 2085018 R identified by similarity to GP:150005; match to protein family HMM PF01610; IS1096, tnpA protein complement(2083696..2085018) Mycobacterium smegmatis str. MC2 155 4533320 YP_886368.1 CDS MSMEG_2004 NC_008596.1 2085076 2085840 R arabinose-proton symporter complement(2085076..2085840) Mycobacterium smegmatis str. MC2 155 4535154 YP_886369.1 CDS MSMEG_2005 NC_008596.1 2085866 2086792 R identified by match to protein family HMM PF01261; sugar phosphate isomerase/epimerase complement(2085866..2086792) Mycobacterium smegmatis str. MC2 155 4531851 YP_886370.1 CDS MSMEG_2006 NC_008596.1 2086952 2087875 R identified by match to protein family HMM PF00903; 2,3-dihydroxybiphenyl 1,2-dioxygenase complement(2086952..2087875) Mycobacterium smegmatis str. MC2 155 4537205 YP_886371.1 CDS MSMEG_2007 NC_008596.1 2087878 2088741 R identified by match to protein family HMM PF01557; HpcE protein complement(2087878..2088741) Mycobacterium smegmatis str. MC2 155 4534674 YP_886372.1 CDS MSMEG_2008 NC_008596.1 2088661 2088927 D hypothetical protein 2088661..2088927 Mycobacterium smegmatis str. MC2 155 4533665 YP_886373.1 CDS MSMEG_2009 NC_008596.1 2088924 2089604 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 2088924..2089604 Mycobacterium smegmatis str. MC2 155 4536411 YP_886374.1 CDS MSMEG_2010 NC_008596.1 2089639 2089956 R identified by match to protein family HMM PF07876; stress responsive A/B barrel domain superfamily protein complement(2089639..2089956) Mycobacterium smegmatis str. MC2 155 4534553 YP_886375.1 CDS MSMEG_2011 NC_008596.1 2090102 2091106 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; LacI family transcriptional regulator complement(2090102..2091106) Mycobacterium smegmatis str. MC2 155 4535077 YP_886376.1 CDS hisD NC_008596.1 2091191 2092510 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2091191..2092510 Mycobacterium smegmatis str. MC2 155 4535601 YP_886377.1 CDS MSMEG_2013 NC_008596.1 2092507 2093262 D identified by match to protein family HMM PF00106; oxidoreductase, short chain dehydrogenase/reductase 2092507..2093262 Mycobacterium smegmatis str. MC2 155 4534672 YP_886378.1 CDS MSMEG_2014 NC_008596.1 2093263 2094348 R identified by match to protein family HMM PF00005; match to protein family HMM PF03459; molybdenum import ATP-binding protein ModC complement(2093263..2094348) Mycobacterium smegmatis str. MC2 155 4536487 YP_886379.1 CDS modB NC_008596.1 2094345 2095157 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01581; match to protein family HMM TIGR02141; molybdate ABC transporter permease complement(2094345..2095157) Mycobacterium smegmatis str. MC2 155 4531048 YP_886380.1 CDS modA NC_008596.1 2095154 2095897 R identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdate ABC transporter periplasmic molybdate-binding protein complement(2095154..2095897) Mycobacterium smegmatis str. MC2 155 4531850 YP_886381.1 CDS MSMEG_2017 NC_008596.1 2095894 2096298 R identified by match to protein family HMM PF00376; match to protein family HMM PF03459; match to protein family HMM TIGR01764; MerR family transcriptional regulator complement(2095894..2096298) Mycobacterium smegmatis str. MC2 155 4531891 YP_886382.1 CDS MSMEG_2019 NC_008596.1 2096408 2097154 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short-chain dehydrogenase/reductase SDR 2096408..2097154 Mycobacterium smegmatis str. MC2 155 4533661 YP_886383.1 CDS MSMEG_2021 NC_008596.1 2098884 2100914 D identified by match to protein family HMM PF01757; lipopolysaccharide biosynthesis acyltransferase, M 2098884..2100914 Mycobacterium smegmatis str. MC2 155 4532929 YP_886384.1 CDS MSMEG_2022 NC_008596.1 2101118 2102572 D identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM PF06808; GntT protein 2101118..2102572 Mycobacterium smegmatis str. MC2 155 4536468 YP_886385.1 CDS MSMEG_2023 NC_008596.1 2102587 2103825 D identified by match to protein family HMM PF02515; CAIB/BAIF family protein 2102587..2103825 Mycobacterium smegmatis str. MC2 155 4537331 YP_886386.1 CDS MSMEG_2024 NC_008596.1 2103822 2104766 D identified by match to protein family HMM PF00682; hydroxymethylglutaryl-CoA lyase 2103822..2104766 Mycobacterium smegmatis str. MC2 155 4536616 YP_886387.1 CDS MSMEG_2025 NC_008596.1 2104783 2105565 D identified by match to protein family HMM PF01614; IclR family protein transcriptional regulator 2104783..2105565 Mycobacterium smegmatis str. MC2 155 4536865 YP_886388.1 CDS MSMEG_2026 NC_008596.1 2105584 2106414 D identified by match to protein family HMM PF00106; short chain dehydrogenase 2105584..2106414 Mycobacterium smegmatis str. MC2 155 4534656 YP_886389.1 CDS MSMEG_2027 NC_008596.1 2106472 2106894 R identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026; hypothetical protein complement(2106472..2106894) Mycobacterium smegmatis str. MC2 155 4532592 YP_886390.1 CDS MSMEG_2028 NC_008596.1 2106948 2108135 R identified by match to protein family HMM PF07690; chloramphenicol resistance protein complement(2106948..2108135) Mycobacterium smegmatis str. MC2 155 4531392 YP_886391.1 CDS MSMEG_2029 NC_008596.1 2108135 2108896 R identified by match to protein family HMM PF00106; 3-ketoacyl-ACP reductase complement(2108135..2108896) Mycobacterium smegmatis str. MC2 155 4536533 YP_886392.1 CDS MSMEG_2030 NC_008596.1 2108966 2109559 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2108966..2109559 Mycobacterium smegmatis str. MC2 155 4530884 YP_886393.1 CDS MSMEG_2031 NC_008596.1 2109561 2109743 R hypothetical protein complement(2109561..2109743) Mycobacterium smegmatis str. MC2 155 4536206 YP_886394.1 CDS MSMEG_2032 NC_008596.1 2109768 2110526 D identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein 2109768..2110526 Mycobacterium smegmatis str. MC2 155 4534148 YP_886395.1 CDS MSMEG_2033 NC_008596.1 2110538 2111509 R identified by match to protein family HMM PF00107; oxidoreductase, zinc-binding dehydrogenase complement(2110538..2111509) Mycobacterium smegmatis str. MC2 155 4533481 YP_886396.1 CDS MSMEG_2034 NC_008596.1 2111627 2112715 D identified by match to protein family HMM PF00107; aryl-alcohol dehydrogenase 2111627..2112715 Mycobacterium smegmatis str. MC2 155 4530814 YP_886397.1 CDS MSMEG_2036 NC_008596.1 2112758 2113684 D identified by match to protein family HMM PF00561; alpha/beta hydrolase 2112758..2113684 Mycobacterium smegmatis str. MC2 155 4535896 YP_886398.1 CDS MSMEG_2035 NC_008596.1 2113659 2115026 R identified by match to protein family HMM PF01266; match to protein family HMM PF01593; amine oxidase complement(2113659..2115026) Mycobacterium smegmatis str. MC2 155 4532147 YP_886399.1 CDS MSMEG_2037 NC_008596.1 2115046 2116035 D identified by match to protein family HMM PF00296; hypothetical protein 2115046..2116035 Mycobacterium smegmatis str. MC2 155 4532820 YP_886400.1 CDS MSMEG_2038 NC_008596.1 2116080 2117639 D identified by match to protein family HMM PF01266; monooxygenase, flavin-binding family protein 2116080..2117639 Mycobacterium smegmatis str. MC2 155 4536652 YP_886401.1 CDS MSMEG_2039 NC_008596.1 2117665 2118420 R identified by match to protein family HMM PF00165; transcriptional regulator complement(2117665..2118420) Mycobacterium smegmatis str. MC2 155 4535136 YP_886402.1 CDS MSMEG_2040 NC_008596.1 2118476 2118826 D hypothetical protein 2118476..2118826 Mycobacterium smegmatis str. MC2 155 4531429 YP_886403.1 CDS MSMEG_2042 NC_008596.1 2119958 2121094 R identified by match to protein family HMM PF01636; phosphotransferase enzyme family protein complement(2119958..2121094) Mycobacterium smegmatis str. MC2 155 4531675 YP_886404.1 CDS MSMEG_2043 NC_008596.1 2121141 2121749 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2121141..2121749 Mycobacterium smegmatis str. MC2 155 4533868 YP_886405.1 CDS MSMEG_2044 NC_008596.1 2121822 2123135 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; integral membrane transporter 2121822..2123135 Mycobacterium smegmatis str. MC2 155 4533667 YP_886406.1 CDS MSMEG_2045 NC_008596.1 2123135 2124499 D identified by match to protein family HMM PF00296; monoxygenase 2123135..2124499 Mycobacterium smegmatis str. MC2 155 4535804 YP_886407.1 CDS MSMEG_2046 NC_008596.1 2124514 2125188 D identified by match to protein family HMM PF02585; GlcNAc-PI de-N-acetylase 2124514..2125188 Mycobacterium smegmatis str. MC2 155 4536708 YP_886408.1 CDS MSMEG_2048 NC_008596.1 2125208 2126242 D identified by match to protein family HMM PF00107; alcohol dehydrogenase 2125208..2126242 Mycobacterium smegmatis str. MC2 155 4532292 YP_886409.1 CDS MSMEG_2047 NC_008596.1 2126239 2127006 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(2126239..2127006) Mycobacterium smegmatis str. MC2 155 4532833 YP_886410.1 CDS MSMEG_2049 NC_008596.1 2127094 2127675 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2127094..2127675 Mycobacterium smegmatis str. MC2 155 4534326 YP_886411.1 CDS nuoN NC_008596.1 2127764 2129329 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N complement(2127764..2129329) Mycobacterium smegmatis str. MC2 155 4534944 YP_886412.1 CDS nuoM NC_008596.1 2129331 2130920 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M complement(2129331..2130920) Mycobacterium smegmatis str. MC2 155 4530833 YP_886413.1 CDS nuoL NC_008596.1 2130914 2132803 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L complement(2130914..2132803) Mycobacterium smegmatis str. MC2 155 4534054 YP_886414.1 CDS nuoK NC_008596.1 2132811 2133110 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K complement(2132811..2133110) Mycobacterium smegmatis str. MC2 155 4534671 YP_886415.1 CDS MSMEG_2054 NC_008596.1 2133116 2133874 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J complement(2133116..2133874) Mycobacterium smegmatis str. MC2 155 4536884 YP_886416.1 CDS nuoI NC_008596.1 2133871 2134413 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(2133871..2134413) Mycobacterium smegmatis str. MC2 155 4535706 YP_886417.1 CDS nuoH NC_008596.1 2134406 2135632 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(2134406..2135632) Mycobacterium smegmatis str. MC2 155 4531100 YP_886418.1 CDS nuoG NC_008596.1 2135629 2138013 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G complement(2135629..2138013) Mycobacterium smegmatis str. MC2 155 4536931 YP_886419.1 CDS nuoF NC_008596.1 2138102 2139433 R identified by similarity to SP:P31979; match to protein family HMM PF01512; match to protein family HMM TIGR01959; NADH-quinone oxidoreductase subunit F complement(2138102..2139433) Mycobacterium smegmatis str. MC2 155 4532209 YP_886420.1 CDS MSMEG_2059 NC_008596.1 2139430 2140167 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E complement(2139430..2140167) Mycobacterium smegmatis str. MC2 155 4535338 YP_886421.1 CDS nuoD NC_008596.1 2140228 2141556 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D complement(2140228..2141556) Mycobacterium smegmatis str. MC2 155 4536590 YP_886422.1 CDS MSMEG_2061 NC_008596.1 2141556 2142272 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C complement(2141556..2142272) Mycobacterium smegmatis str. MC2 155 4532920 YP_886423.1 CDS nuoB NC_008596.1 2142269 2142823 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(2142269..2142823) Mycobacterium smegmatis str. MC2 155 4535452 YP_886424.1 CDS nuoA NC_008596.1 2142814 2143182 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A complement(2142814..2143182) Mycobacterium smegmatis str. MC2 155 4533918 YP_886425.1 CDS MSMEG_2064 NC_008596.1 2143366 2143764 R two-component system response regulator complement(2143366..2143764) Mycobacterium smegmatis str. MC2 155 4532241 YP_886426.1 CDS MSMEG_2065 NC_008596.1 2143828 2144346 R identified by match to protein family HMM PF04264; hypothetical protein complement(2143828..2144346) Mycobacterium smegmatis str. MC2 155 4532414 YP_886427.1 CDS MSMEG_2066 NC_008596.1 2144378 2144779 R hypothetical protein complement(2144378..2144779) Mycobacterium smegmatis str. MC2 155 4534452 YP_886428.1 CDS MSMEG_2067 NC_008596.1 2144836 2145471 D identified by match to protein family HMM PF05724; methyltransferase type 12 2144836..2145471 Mycobacterium smegmatis str. MC2 155 4535617 YP_886429.1 CDS MSMEG_2068 NC_008596.1 2145479 2145835 R hypothetical protein complement(2145479..2145835) Mycobacterium smegmatis str. MC2 155 4536775 YP_886430.1 CDS MSMEG_2069 NC_008596.1 2145832 2146821 R identified by match to protein family HMM PF01636; phosphotransferase enzyme family protein complement(2145832..2146821) Mycobacterium smegmatis str. MC2 155 4537273 YP_886431.1 CDS MSMEG_2070 NC_008596.1 2146818 2148062 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(2146818..2148062) Mycobacterium smegmatis str. MC2 155 4532061 YP_886432.1 CDS MSMEG_2071 NC_008596.1 2148073 2148684 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(2148073..2148684) Mycobacterium smegmatis str. MC2 155 4536766 YP_886433.1 CDS MSMEG_2072 NC_008596.1 2148691 2149593 R identified by match to protein family HMM PF00682; 3-hydroxy-3-methylglutaryl-CoA lyase complement(2148691..2149593) Mycobacterium smegmatis str. MC2 155 4536365 YP_886434.1 CDS MSMEG_2073 NC_008596.1 2149593 2150795 R identified by match to protein family HMM PF02515; CAIB/BAIF family protein complement(2149593..2150795) Mycobacterium smegmatis str. MC2 155 4535101 YP_886435.1 CDS MSMEG_2074 NC_008596.1 2150792 2152021 R hypothetical protein complement(2150792..2152021) Mycobacterium smegmatis str. MC2 155 4536765 YP_886436.1 CDS hmgA NC_008596.1 2152022 2153125 R identified by match to protein family HMM PF04209; homogentisate 1,2-dioxygenase complement(2152022..2153125) Mycobacterium smegmatis str. MC2 155 4536133 YP_886437.1 CDS MSMEG_2076 NC_008596.1 2153254 2153850 R identified by match to protein family HMM PF04229; hypothetical protein complement(2153254..2153850) Mycobacterium smegmatis str. MC2 155 4531524 YP_886438.1 CDS MSMEG_2077 NC_008596.1 2153861 2155042 R identified by match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(2153861..2155042) Mycobacterium smegmatis str. MC2 155 4537294 YP_886439.1 CDS MSMEG_2078 NC_008596.1 2155501 2156478 D identified by match to protein family HMM PF00756; antigen 85-C 2155501..2156478 Mycobacterium smegmatis str. MC2 155 4533257 YP_886440.1 CDS MSMEG_2079 NC_008596.1 2156545 2157543 R identified by match to protein family HMM PF00107; match to protein family HMM TIGR02823; alcohol dehydrogenase complement(2156545..2157543) Mycobacterium smegmatis str. MC2 155 4530894 YP_886441.1 CDS MSMEG_2080 NC_008596.1 2157633 2158853 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(2157633..2158853) Mycobacterium smegmatis str. MC2 155 4533284 YP_886442.1 CDS MSMEG_2081 NC_008596.1 2158889 2160217 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(2158889..2160217) Mycobacterium smegmatis str. MC2 155 4531665 YP_886443.1 CDS MSMEG_2082 NC_008596.1 2160227 2160346 D hypothetical protein 2160227..2160346 Mycobacterium smegmatis str. MC2 155 4536127 YP_886444.1 CDS MSMEG_2083 NC_008596.1 2160404 2161186 R identified by match to protein family HMM PF00459; match to protein family HMM TIGR02067; inositol monophosphatase complement(2160404..2161186) Mycobacterium smegmatis str. MC2 155 4531039 YP_886445.1 CDS MSMEG_2084 NC_008596.1 2161210 2161590 D hypothetical protein 2161210..2161590 Mycobacterium smegmatis str. MC2 155 4536395 YP_886446.1 CDS prfB NC_008596.1 2163153 2164259 D recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 2163153..2164259 Mycobacterium smegmatis str. MC2 155 4532599 YP_886447.1 CDS MSMEG_2087 NC_008596.1 2164249 2165229 D identified by match to protein family HMM PF00924; transporter small conductance mechanosensitive ion channel (MscS) family protein 2164249..2165229 Mycobacterium smegmatis str. MC2 155 4537734 YP_886448.1 CDS MSMEG_2088 NC_008596.1 2165307 2165747 D hypothetical protein 2165307..2165747 Mycobacterium smegmatis str. MC2 155 4535934 YP_886449.1 CDS ftsE NC_008596.1 2165793 2166482 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR00960; match to protein family HMM TIGR02673; cell division ATP-binding protein FtsE 2165793..2166482 Mycobacterium smegmatis str. MC2 155 4531621 YP_886450.1 CDS MSMEG_2090 NC_008596.1 2166483 2167379 D identified by match to protein family HMM PF02687; cell division protein FtsX 2166483..2167379 Mycobacterium smegmatis str. MC2 155 4537657 YP_886451.1 CDS smpB NC_008596.1 2167390 2167875 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2167390..2167875 Mycobacterium smegmatis str. MC2 155 4537023 YP_886452.1 CDS MSMEG_2092 NC_008596.1 2168040 2169143 D identified by match to protein family HMM PF03576; D-aminopeptidase 2168040..2169143 Mycobacterium smegmatis str. MC2 155 4535729 YP_886453.1 CDS MSMEG_2094 NC_008596.1 2169678 2171087 R identified by match to protein family HMM PF05694; 56kDa selenium binding protein complement(2169678..2171087) Mycobacterium smegmatis str. MC2 155 4532047 YP_886454.1 CDS MSMEG_2095 NC_008596.1 2171219 2172142 D identified by match to protein family HMM PF01083; serine esterase, cutinase 2171219..2172142 Mycobacterium smegmatis str. MC2 155 4537439 YP_886455.1 CDS MSMEG_2096 NC_008596.1 2172275 2173018 R identified by match to protein family HMM PF01925; integral membrane protein complement(2172275..2173018) Mycobacterium smegmatis str. MC2 155 4532781 YP_886456.1 CDS MSMEG_2097 NC_008596.1 2173038 2174138 R identified by match to protein family HMM PF03417; acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase complement(2173038..2174138) Mycobacterium smegmatis str. MC2 155 4531571 YP_886457.1 CDS MSMEG_2098 NC_008596.1 2174138 2175013 R identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase complement(2174138..2175013) Mycobacterium smegmatis str. MC2 155 4537645 YP_886458.1 CDS MSMEG_2099 NC_008596.1 2175058 2176023 R nitrate/sulfonate ABC transporter substrate-binding protein complement(2175058..2176023) Mycobacterium smegmatis str. MC2 155 4533113 YP_886459.1 CDS MSMEG_2100 NC_008596.1 2176102 2177433 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; peptidase M20/M25/M40 complement(2176102..2177433) Mycobacterium smegmatis str. MC2 155 4536954 YP_886460.1 CDS MSMEG_2102 NC_008596.1 2178248 2179069 R identified by match to protein family HMM PF00005; nitrate transport ATP-binding protein NrtD complement(2178248..2179069) Mycobacterium smegmatis str. MC2 155 4535151 YP_886461.1 CDS MSMEG_2103 NC_008596.1 2179121 2180020 R 5,10-methylenetetrahydromethanopterin reductase complement(2179121..2180020) Mycobacterium smegmatis str. MC2 155 4535897 YP_886462.1 CDS MSMEG_2104 NC_008596.1 2180401 2181750 R identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator complement(2180401..2181750) Mycobacterium smegmatis str. MC2 155 4530810 YP_886463.1 CDS MSMEG_2105 NC_008596.1 2182038 2183003 R ATP dependent DNA ligase complement(2182038..2183003) Mycobacterium smegmatis str. MC2 155 4533417 YP_886464.1 CDS MSMEG_2107 NC_008596.1 2183185 2184645 D hypothetical protein 2183185..2184645 Mycobacterium smegmatis str. MC2 155 4535336 YP_886465.1 CDS MSMEG_2106 NC_008596.1 2184617 2185249 R identified by match to protein family HMM PF00440; match to protein family HMM PF02796; transcriptional regulator complement(2184617..2185249) Mycobacterium smegmatis str. MC2 155 4534872 YP_886466.1 CDS MSMEG_2108 NC_008596.1 2185414 2186352 D hypothetical protein 2185414..2186352 Mycobacterium smegmatis str. MC2 155 4532359 YP_886467.1 CDS MSMEG_2109 NC_008596.1 2186345 2187502 D hypothetical protein 2186345..2187502 Mycobacterium smegmatis str. MC2 155 4533456 YP_886468.1 CDS MSMEG_2110 NC_008596.1 2187612 2188592 D hypothetical protein 2187612..2188592 Mycobacterium smegmatis str. MC2 155 4536984 YP_886469.1 CDS MSMEG_2111 NC_008596.1 2188645 2189190 D catalyzes the interconversion of chorismate to prephenate; chorismate mutase 2188645..2189190 Mycobacterium smegmatis str. MC2 155 4532159 YP_886470.1 CDS MSMEG_2112 NC_008596.1 2189268 2189852 D hypothetical protein 2189268..2189852 Mycobacterium smegmatis str. MC2 155 4531980 YP_886471.1 CDS MSMEG_2115 NC_008596.1 2189849 2190382 D hypothetical protein 2189849..2190382 Mycobacterium smegmatis str. MC2 155 4533393 YP_886472.1 CDS MSMEG_2113 NC_008596.1 2190275 2190532 R hypothetical protein complement(2190275..2190532) Mycobacterium smegmatis str. MC2 155 4531682 YP_886473.1 CDS MSMEG_2114 NC_008596.1 2190361 2190525 R glucose-6-phosphate isomerase complement(2190361..2190525) Mycobacterium smegmatis str. MC2 155 4534903 YP_886474.1 CDS MSMEG_2116 NC_008596.1 2190853 2192436 R identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; PTS system, glucose-specific IIBC component complement(2190853..2192436) Mycobacterium smegmatis str. MC2 155 4532771 YP_886475.1 CDS MSMEG_2117 NC_008596.1 2192581 2193051 D identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830; beta-glucoside-specific EII permease 2192581..2193051 Mycobacterium smegmatis str. MC2 155 4535286 YP_886476.1 CDS nagB NC_008596.1 2193073 2193858 D catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 2193073..2193858 Mycobacterium smegmatis str. MC2 155 4534199 YP_886477.1 CDS nagA NC_008596.1 2193860 2195017 D identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221; N-acetylglucosamine-6-phosphate deacetylase 2193860..2195017 Mycobacterium smegmatis str. MC2 155 4533003 YP_886478.1 CDS MSMEG_2120 NC_008596.1 2195157 2197775 D identified by match to protein family HMM PF00196; hypothetical protein 2195157..2197775 Mycobacterium smegmatis str. MC2 155 4533733 YP_886479.1 CDS MSMEG_2121 NC_008596.1 2197776 2200202 R identified by match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF03610; match to protein family HMM PF05524; match to protein family HMM TIGR01003; match to protein family HMM TIGR01417; match to protein family HMM TIGR02364; multiphosphoryl transfer protein (MTP) complement(2197776..2200202) Mycobacterium smegmatis str. MC2 155 4531479 YP_886480.1 CDS MSMEG_2122 NC_008596.1 2200199 2200831 R identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365; dihydroxyacetone kinase subunit DhaL complement(2200199..2200831) Mycobacterium smegmatis str. MC2 155 4536932 YP_886481.1 CDS dhaK NC_008596.1 2200833 2201831 R identified by match to protein family HMM PF02733; match to protein family HMM TIGR02363; dihydroxyacetone kinase subunit DhaK complement(2200833..2201831) Mycobacterium smegmatis str. MC2 155 4533179 YP_886482.1 CDS MSMEG_2124 NC_008596.1 2201841 2202608 R identified by match to protein family HMM PF00230; glycerol uptake facilitator, MIP channel complement(2201841..2202608) Mycobacterium smegmatis str. MC2 155 4530893 YP_886483.1 CDS MSMEG_2125 NC_008596.1 2202762 2203508 D identified by match to protein family HMM PF01614; glycerol operon regulatory protein 2202762..2203508 Mycobacterium smegmatis str. MC2 155 4535187 YP_886484.1 CDS MSMEG_2126 NC_008596.1 2203331 2203729 D hypothetical protein 2203331..2203729 Mycobacterium smegmatis str. MC2 155 4535820 YP_886485.1 CDS MSMEG_2127 NC_008596.1 2203799 2204158 D identified by match to protein family HMM PF04343; hypothetical protein 2203799..2204158 Mycobacterium smegmatis str. MC2 155 4531970 YP_886486.1 CDS MSMEG_2128 NC_008596.1 2204236 2204883 D malonyl CoA decarboxylase 2204236..2204883 Mycobacterium smegmatis str. MC2 155 4535197 YP_886487.1 CDS MSMEG_2129 NC_008596.1 2205039 2205167 D hypothetical protein 2205039..2205167 Mycobacterium smegmatis str. MC2 155 4535635 YP_886488.1 CDS MSMEG_2130 NC_008596.1 2205201 2206385 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(2205201..2206385) Mycobacterium smegmatis str. MC2 155 4532715 YP_886489.1 CDS MSMEG_2131 NC_008596.1 2206382 2207962 R converts medium- to long-chain aliphatic fatty acids into acyl adenylate; involved in mycobactin synthesis; long-chain-fatty-acid--ACP ligase complement(2206382..2207962) Mycobacterium smegmatis str. MC2 155 4533247 YP_886490.1 CDS MSMEG_2132 NC_008596.1 2207959 2208228 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(2207959..2208228) Mycobacterium smegmatis str. MC2 155 4532343 YP_886491.1 CDS MSMEG_2133 NC_008596.1 2208288 2209358 R identified by match to protein family HMM PF02641; hypothetical protein complement(2208288..2209358) Mycobacterium smegmatis str. MC2 155 4534007 YP_886492.1 CDS crcB NC_008596.1 2209355 2209720 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(2209355..2209720) Mycobacterium smegmatis str. MC2 155 4530826 YP_886493.1 CDS MSMEG_2135 NC_008596.1 2209717 2210115 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(2209717..2210115) Mycobacterium smegmatis str. MC2 155 4533693 YP_886494.1 CDS pgm NC_008596.1 2210186 2211820 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 2210186..2211820 Mycobacterium smegmatis str. MC2 155 4532011 YP_886495.1 CDS MSMEG_2137 NC_008596.1 2211817 2213085 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; permease of the major facilitator superfamily protein 2211817..2213085 Mycobacterium smegmatis str. MC2 155 4531674 YP_886496.1 CDS MSMEG_2139 NC_008596.1 2213383 2213484 R hypothetical protein complement(2213383..2213484) Mycobacterium smegmatis str. MC2 155 4536106 YP_886497.1 CDS MSMEG_2140 NC_008596.1 2213518 2214726 R identified by match to protein family HMM PF02661; Fic family protein complement(2213518..2214726) Mycobacterium smegmatis str. MC2 155 4532561 YP_886498.1 CDS MSMEG_2141 NC_008596.1 2214785 2215036 D gp35 protein 2214785..2215036 Mycobacterium smegmatis str. MC2 155 4532303 YP_886499.1 CDS MSMEG_2142 NC_008596.1 2215051 2215749 D gp36 protein 2215051..2215749 Mycobacterium smegmatis str. MC2 155 4535957 YP_886500.1 CDS MSMEG_2143 NC_008596.1 2215760 2216200 R hypothetical protein complement(2215760..2216200) Mycobacterium smegmatis str. MC2 155 4531423 YP_886501.1 CDS MSMEG_2144 NC_008596.1 2216197 2216793 R hypothetical protein complement(2216197..2216793) Mycobacterium smegmatis str. MC2 155 4537696 YP_886502.1 CDS MSMEG_2145 NC_008596.1 2217015 2217425 D hypothetical protein 2217015..2217425 Mycobacterium smegmatis str. MC2 155 4537483 YP_886503.1 CDS MSMEG_2146 NC_008596.1 2217440 2221084 D gp15 protein 2217440..2221084 Mycobacterium smegmatis str. MC2 155 4535278 YP_886504.1 CDS MSMEG_2148 NC_008596.1 2222742 2224376 D identified by match to protein family HMM PF01844; HNH endonuclease domain-containing protein 2222742..2224376 Mycobacterium smegmatis str. MC2 155 4531967 YP_886505.1 CDS MSMEG_2149 NC_008596.1 2224483 2224938 D hypothetical protein 2224483..2224938 Mycobacterium smegmatis str. MC2 155 4531162 YP_886506.1 CDS MSMEG_2150 NC_008596.1 2225109 2225963 R identified by match to protein family HMM PF01695; transposition helper protein complement(2225109..2225963) Mycobacterium smegmatis str. MC2 155 4531278 YP_886507.1 CDS MSMEG_2151 NC_008596.1 2225960 2227321 R identified by match to protein family HMM PF00665; transposase IstA protein complement(2225960..2227321) Mycobacterium smegmatis str. MC2 155 4536488 YP_886508.1 CDS MSMEG_2153 NC_008596.1 2228170 2228763 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(2228170..2228763) Mycobacterium smegmatis str. MC2 155 4537522 YP_886509.1 CDS MSMEG_2154 NC_008596.1 2228863 2229687 D hypothetical protein 2228863..2229687 Mycobacterium smegmatis str. MC2 155 4535604 YP_886510.1 CDS MSMEG_2155 NC_008596.1 2229760 2230743 D identified by match to protein family HMM PF00107; trans-2-enoyl-CoA reductase 2229760..2230743 Mycobacterium smegmatis str. MC2 155 4531723 YP_886511.1 CDS MSMEG_2156 NC_008596.1 2230794 2231729 D identified by match to protein family HMM PF05368; hypothetical protein 2230794..2231729 Mycobacterium smegmatis str. MC2 155 4534985 YP_886512.1 CDS MSMEG_2157 NC_008596.1 2231876 2232784 D hypothetical protein 2231876..2232784 Mycobacterium smegmatis str. MC2 155 4537108 YP_886513.1 CDS MSMEG_2159 NC_008596.1 2232790 2233644 D identified by match to protein family HMM PF05114; hypothetical protein 2232790..2233644 Mycobacterium smegmatis str. MC2 155 4536228 YP_886514.1 CDS MSMEG_2158 NC_008596.1 2233443 2233865 R hypothetical protein complement(2233443..2233865) Mycobacterium smegmatis str. MC2 155 4534377 YP_886515.1 CDS MSMEG_2160 NC_008596.1 2233641 2233796 D hypothetical protein 2233641..2233796 Mycobacterium smegmatis str. MC2 155 4534623 YP_886516.1 CDS MSMEG_2162 NC_008596.1 2237715 2238554 D MmcJ protein 2237715..2238554 Mycobacterium smegmatis str. MC2 155 4531332 YP_886517.1 CDS MSMEG_2163 NC_008596.1 2238574 2240016 D identified by match to protein family HMM PF00171; aldehyde dehydrogenase 2238574..2240016 Mycobacterium smegmatis str. MC2 155 4533977 YP_886518.1 CDS MSMEG_2164 NC_008596.1 2240142 2240876 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; transcriptional regulator 2240142..2240876 Mycobacterium smegmatis str. MC2 155 4530948 YP_886519.1 CDS MSMEG_2165 NC_008596.1 2241113 2241976 D identified by match to protein family HMM PF00456; transketolase 2241113..2241976 Mycobacterium smegmatis str. MC2 155 4534631 YP_886520.1 CDS MSMEG_2166 NC_008596.1 2241973 2243007 D identified by match to protein family HMM PF02779; match to protein family HMM PF02780; transketolase 2241973..2243007 Mycobacterium smegmatis str. MC2 155 4532204 YP_886521.1 CDS MSMEG_2167 NC_008596.1 2243141 2244442 D identified by match to protein family HMM PF00557; aminopeptidase 2243141..2244442 Mycobacterium smegmatis str. MC2 155 4533397 YP_886522.1 CDS MSMEG_2168 NC_008596.1 2244465 2244662 D hypothetical protein 2244465..2244662 Mycobacterium smegmatis str. MC2 155 4532945 YP_886523.1 CDS MSMEG_2170 NC_008596.1 2244650 2245630 D identified by match to protein family HMM PF03446; match to protein family HMM PF03807; 3-hydroxyisobutyrate dehydrogenase 2244650..2245630 Mycobacterium smegmatis str. MC2 155 4531136 YP_886524.1 CDS accD NC_008596.1 2245536 2247044 R identified by match to protein family HMM PF01039; acetyl-CoA carboxylase, carboxyl transferase subunit beta complement(2245536..2247044) Mycobacterium smegmatis str. MC2 155 4533851 YP_886525.1 CDS MSMEG_2171 NC_008596.1 2247041 2248261 R identified by match to protein family HMM PF02515; L-carnitine dehydratase/bile acid-inducible protein F complement(2247041..2248261) Mycobacterium smegmatis str. MC2 155 4533917 YP_886526.1 CDS MSMEG_2172 NC_008596.1 2248470 2249870 R identified by match to protein family HMM PF03600; match to protein family HMM PF07158; dicarboxylate-carrier protein complement(2248470..2249870) Mycobacterium smegmatis str. MC2 155 4534420 YP_886527.1 CDS MSMEG_2173 NC_008596.1 2250029 2250721 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 2250029..2250721 Mycobacterium smegmatis str. MC2 155 4536588 YP_886528.1 CDS MSMEG_2174 NC_008596.1 2250877 2253087 D superfamily protein I DNA or RNA helicase 2250877..2253087 Mycobacterium smegmatis str. MC2 155 4537001 YP_886529.1 CDS MSMEG_2176 NC_008596.1 2253121 2253447 D hypothetical protein 2253121..2253447 Mycobacterium smegmatis str. MC2 155 4535891 YP_886530.1 CDS MSMEG_2175 NC_008596.1 2253444 2254820 R nitrilotriacetate monooxygenase component A complement(2253444..2254820) Mycobacterium smegmatis str. MC2 155 4533864 YP_886531.1 CDS MSMEG_2177 NC_008596.1 2254841 2256019 R fmnh2-utilizing oxygenase complement(2254841..2256019) Mycobacterium smegmatis str. MC2 155 4532082 YP_886532.1 CDS MSMEG_2178 NC_008596.1 2256187 2256384 R integral membrane protein complement(2256187..2256384) Mycobacterium smegmatis str. MC2 155 4534334 YP_886533.1 CDS MSMEG_2179 NC_008596.1 2256454 2257758 D identified by match to protein family HMM PF00440; transcriptional regulatory protein 2256454..2257758 Mycobacterium smegmatis str. MC2 155 4536151 YP_886534.1 CDS MSMEG_2180 NC_008596.1 2257799 2258323 R RemK protein complement(2257799..2258323) Mycobacterium smegmatis str. MC2 155 4532346 YP_886535.1 CDS MSMEG_2182 NC_008596.1 2258412 2259011 D identified by match to protein family HMM PF00440; transcriptional regulator 2258412..2259011 Mycobacterium smegmatis str. MC2 155 4535640 YP_886536.1 CDS MSMEG_2181 NC_008596.1 2258987 2259802 R identified by match to protein family HMM PF02661; cell filamentation protein complement(2258987..2259802) Mycobacterium smegmatis str. MC2 155 4535864 YP_886537.1 CDS MSMEG_2183 NC_008596.1 2259796 2260779 R hypothetical protein complement(2259796..2260779) Mycobacterium smegmatis str. MC2 155 4536330 YP_886538.1 CDS MSMEG_2184 NC_008596.1 2260965 2262506 D identified by match to protein family HMM PF00324; amino acid permease 2260965..2262506 Mycobacterium smegmatis str. MC2 155 4530886 YP_886539.1 CDS MSMEG_2185 NC_008596.1 2262515 2263351 D hypothetical protein 2262515..2263351 Mycobacterium smegmatis str. MC2 155 4535114 YP_886540.1 CDS MSMEG_2186 NC_008596.1 2263348 2263971 D hypothetical protein 2263348..2263971 Mycobacterium smegmatis str. MC2 155 4536021 YP_886541.1 CDS MSMEG_2187 NC_008596.1 2263968 2265989 D identified by match to protein family HMM PF02626; match to protein family HMM PF02682; match to protein family HMM TIGR00724; urea amidolyase 2263968..2265989 Mycobacterium smegmatis str. MC2 155 4537083 YP_886542.1 CDS atzF NC_008596.1 2265986 2267656 D identified by match to protein family HMM PF01425; match to protein family HMM TIGR02713; allophanate hydrolase 2265986..2267656 Mycobacterium smegmatis str. MC2 155 4532364 YP_886543.1 CDS MSMEG_2188 NC_008596.1 2267604 2268578 R identified by match to protein family HMM PF00892; integral membrane protein complement(2267604..2268578) Mycobacterium smegmatis str. MC2 155 4533756 YP_886544.1 CDS MSMEG_2190 NC_008596.1 2268648 2269790 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(2268648..2269790) Mycobacterium smegmatis str. MC2 155 4532039 YP_886545.1 CDS MSMEG_2191 NC_008596.1 2269802 2271034 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; acyl-CoA dehydrogenase complement(2269802..2271034) Mycobacterium smegmatis str. MC2 155 4537389 YP_886546.1 CDS MSMEG_2192 NC_008596.1 2271168 2271569 D hypothetical protein 2271168..2271569 Mycobacterium smegmatis str. MC2 155 4534176 YP_886547.1 CDS MSMEG_2194 NC_008596.1 2271642 2272415 D identified by match to protein family HMM PF00376; match to protein family HMM PF07739; MerR family transcriptional regulator 2271642..2272415 Mycobacterium smegmatis str. MC2 155 4535065 YP_886548.1 CDS MSMEG_2193 NC_008596.1 2272412 2273065 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(2272412..2273065) Mycobacterium smegmatis str. MC2 155 4537682 YP_886549.1 CDS MSMEG_2195 NC_008596.1 2273072 2273773 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(2273072..2273773) Mycobacterium smegmatis str. MC2 155 4536563 YP_886550.1 CDS MSMEG_2197 NC_008596.1 2274343 2275170 D hypothetical protein 2274343..2275170 Mycobacterium smegmatis str. MC2 155 4534733 YP_886551.1 CDS MSMEG_2196 NC_008596.1 2275150 2276997 R identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00254; sensory box/response regulator complement(2275150..2276997) Mycobacterium smegmatis str. MC2 155 4535449 YP_886552.1 CDS MSMEG_2198 NC_008596.1 2277027 2279198 R identified by match to protein family HMM PF00899; hypothetical protein complement(2277027..2279198) Mycobacterium smegmatis str. MC2 155 4534828 YP_886553.1 CDS MSMEG_2199 NC_008596.1 2279195 2279959 R hypothetical protein complement(2279195..2279959) Mycobacterium smegmatis str. MC2 155 4533810 YP_886554.1 CDS purU NC_008596.1 2280439 2281332 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 2280439..2281332 Mycobacterium smegmatis str. MC2 155 4535680 YP_886555.1 CDS MSMEG_2201 NC_008596.1 2281354 2281806 D identified by match to protein family HMM PF01575; ZbpA protein 2281354..2281806 Mycobacterium smegmatis str. MC2 155 4537510 YP_886556.1 CDS MSMEG_2202 NC_008596.1 2281948 2283312 D identified by match to protein family HMM PF00743; dimethylaniline monooxygenase 2281948..2283312 Mycobacterium smegmatis str. MC2 155 4536630 YP_886557.1 CDS MSMEG_2203 NC_008596.1 2283309 2284205 D identified by match to protein family HMM PF00561; alpha/beta hydrolase 2283309..2284205 Mycobacterium smegmatis str. MC2 155 4535007 YP_886558.1 CDS MSMEG_2204 NC_008596.1 2284280 2285101 R identified by match to protein family HMM PF00106; carveol dehydrogenase complement(2284280..2285101) Mycobacterium smegmatis str. MC2 155 4531220 YP_886559.1 CDS MSMEG_2205 NC_008596.1 2285144 2286337 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(2285144..2286337) Mycobacterium smegmatis str. MC2 155 4531495 YP_886560.1 CDS fabG NC_008596.1 2286455 2287189 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 2286455..2287189 Mycobacterium smegmatis str. MC2 155 4532167 YP_886561.1 CDS MSMEG_2207 NC_008596.1 2287186 2288409 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 2287186..2288409 Mycobacterium smegmatis str. MC2 155 4537373 YP_886562.1 CDS MSMEG_2208 NC_008596.1 2288417 2289610 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 2288417..2289610 Mycobacterium smegmatis str. MC2 155 4533614 YP_886563.1 CDS MSMEG_2209 NC_008596.1 2289614 2290282 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 2289614..2290282 Mycobacterium smegmatis str. MC2 155 4532923 YP_886564.1 CDS MSMEG_2211 NC_008596.1 2291531 2292370 R identified by match to protein family HMM PF01381; DNA-binding protein complement(2291531..2292370) Mycobacterium smegmatis str. MC2 155 4535146 YP_886565.1 CDS MSMEG_2212 NC_008596.1 2292544 2293488 D identified by match to protein family HMM PF00106; short chain dehydrogenase 2292544..2293488 Mycobacterium smegmatis str. MC2 155 4533963 YP_886566.1 CDS MSMEG_2213 NC_008596.1 2293527 2294720 D identified by match to protein family HMM PF00891; O-methyltransferase 2293527..2294720 Mycobacterium smegmatis str. MC2 155 4532696 YP_886567.1 CDS MSMEG_2215 NC_008596.1 2294995 2296497 R identified by match to protein family HMM PF00501; AMP-binding protein complement(2294995..2296497) Mycobacterium smegmatis str. MC2 155 4531650 YP_886568.1 CDS MSMEG_2216 NC_008596.1 2296490 2297974 R identified by match to protein family HMM PF00501; AMP-binding protein complement(2296490..2297974) Mycobacterium smegmatis str. MC2 155 4536171 YP_886569.1 CDS MSMEG_2217 NC_008596.1 2297967 2299418 R identified by match to protein family HMM PF00501; AMP-dependent synthetase/ligase complement(2297967..2299418) Mycobacterium smegmatis str. MC2 155 4532760 YP_886570.1 CDS MSMEG_2218 NC_008596.1 2299418 2300200 R identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase complement(2299418..2300200) Mycobacterium smegmatis str. MC2 155 4536444 YP_886571.1 CDS MSMEG_2219 NC_008596.1 2300197 2301003 R identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase complement(2300197..2301003) Mycobacterium smegmatis str. MC2 155 4533083 YP_886572.1 CDS MSMEG_2220 NC_008596.1 2301024 2301845 R identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase complement(2301024..2301845) Mycobacterium smegmatis str. MC2 155 4537289 YP_886573.1 CDS MSMEG_2221 NC_008596.1 2301934 2302098 D hypothetical protein 2301934..2302098 Mycobacterium smegmatis str. MC2 155 4533686 YP_886574.1 CDS MSMEG_2222 NC_008596.1 2301963 2302109 D hypothetical protein 2301963..2302109 Mycobacterium smegmatis str. MC2 155 4531579 YP_886575.1 CDS MSMEG_2223 NC_008596.1 2302131 2303000 D identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase 2302131..2303000 Mycobacterium smegmatis str. MC2 155 4535576 YP_886576.1 CDS MSMEG_2224 NC_008596.1 2303045 2304229 D identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acetyl-CoA C-acyltransferase 2303045..2304229 Mycobacterium smegmatis str. MC2 155 4534295 YP_886577.1 CDS MSMEG_2225 NC_008596.1 2304294 2305031 R identified by match to protein family HMM PF00440; match to protein family HMM PF02909; TetR family transcriptional regulator complement(2304294..2305031) Mycobacterium smegmatis str. MC2 155 4534771 YP_886578.1 CDS MSMEG_2226 NC_008596.1 2305009 2305179 R hypothetical protein complement(2305009..2305179) Mycobacterium smegmatis str. MC2 155 4533531 YP_886579.1 CDS MSMEG_2227 NC_008596.1 2305317 2306081 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2305317..2306081 Mycobacterium smegmatis str. MC2 155 4531252 YP_886580.1 CDS MSMEG_2228 NC_008596.1 2306091 2306888 D identified by match to protein family HMM PF00106; oxidoreductase, short chain dehydrogenase/reductase 2306091..2306888 Mycobacterium smegmatis str. MC2 155 4533074 YP_886581.1 CDS MSMEG_2229 NC_008596.1 2307025 2307846 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2307025..2307846 Mycobacterium smegmatis str. MC2 155 4531238 YP_886582.1 CDS MSMEG_2230 NC_008596.1 2307861 2309111 D identified by match to protein family HMM PF04909; amidohydrolase 2307861..2309111 Mycobacterium smegmatis str. MC2 155 4536877 YP_886583.1 CDS MSMEG_2231 NC_008596.1 2309115 2310743 D activates fatty acids by binding to coenzyme A; in Mycobacterium may be involved in virulence; acyl-CoA synthetase 2309115..2310743 Mycobacterium smegmatis str. MC2 155 4533496 YP_886584.1 CDS MSMEG_2232 NC_008596.1 2310740 2311594 D identified by match to protein family HMM PF04909; amidohydrolase 2310740..2311594 Mycobacterium smegmatis str. MC2 155 4536082 YP_886585.1 CDS MSMEG_2233 NC_008596.1 2311599 2312648 D identified by match to protein family HMM PF00441; acyl-CoA dehydrogenase 2311599..2312648 Mycobacterium smegmatis str. MC2 155 4536433 YP_886586.1 CDS MSMEG_2234 NC_008596.1 2312674 2313864 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase 2312674..2313864 Mycobacterium smegmatis str. MC2 155 4535674 YP_886587.1 CDS MSMEG_2235 NC_008596.1 2313886 2315121 R identified by match to protein family HMM PF04909; amidohydrolase complement(2313886..2315121) Mycobacterium smegmatis str. MC2 155 4531103 YP_886588.1 CDS MSMEG_2236 NC_008596.1 2315214 2316362 R identified by match to protein family HMM PF02803; thiolase complement(2315214..2316362) Mycobacterium smegmatis str. MC2 155 4536489 YP_886589.1 CDS MSMEG_2237 NC_008596.1 2316524 2318806 D identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; anaerobic dehydrogenase 2316524..2318806 Mycobacterium smegmatis str. MC2 155 4534336 YP_886590.1 CDS MSMEG_2238 NC_008596.1 2318803 2320329 D identified by match to protein family HMM PF00171; aldehyde dehydrogenase 2318803..2320329 Mycobacterium smegmatis str. MC2 155 4537385 YP_886591.1 CDS MSMEG_2239 NC_008596.1 2320363 2321103 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(2320363..2321103) Mycobacterium smegmatis str. MC2 155 4535689 YP_886592.1 CDS MSMEG_2240 NC_008596.1 2321106 2322314 R identified by match to protein family HMM PF00067; cytochrome P450 complement(2321106..2322314) Mycobacterium smegmatis str. MC2 155 4532787 YP_886593.1 CDS MSMEG_2242 NC_008596.1 2322534 2324021 D identified by match to protein family HMM PF00171; coniferyl aldehyde dehydrogenase 2322534..2324021 Mycobacterium smegmatis str. MC2 155 4533134 YP_886594.1 CDS MSMEG_2241 NC_008596.1 2324005 2325657 R activates fatty acids by binding to coenzyme A; in Mycobacterium may be involved in virulence; acyl-CoA synthetase complement(2324005..2325657) Mycobacterium smegmatis str. MC2 155 4537397 YP_886595.1 CDS MSMEG_2243 NC_008596.1 2325677 2326282 R identified by match to protein family HMM PF00857; isochorismatase complement(2325677..2326282) Mycobacterium smegmatis str. MC2 155 4532513 YP_886596.1 CDS MSMEG_2244 NC_008596.1 2326291 2327307 R identified by match to protein family HMM PF00355; Rieske (2Fe-2S) domain-containing protein complement(2326291..2327307) Mycobacterium smegmatis str. MC2 155 4537622 YP_886597.1 CDS MSMEG_2245 NC_008596.1 2327539 2327985 D bile-acid 7-alpha dehydratase 2327539..2327985 Mycobacterium smegmatis str. MC2 155 4531559 YP_886598.1 CDS MSMEG_2246 NC_008596.1 2327988 2328650 R hypothetical protein complement(2327988..2328650) Mycobacterium smegmatis str. MC2 155 4535063 YP_886599.1 CDS MSMEG_2247 NC_008596.1 2328800 2329819 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; dihydrokaempferol 4-reductase 2328800..2329819 Mycobacterium smegmatis str. MC2 155 4536720 YP_886600.1 CDS MSMEG_2249 NC_008596.1 2329816 2330946 D identified by match to protein family HMM PF00296; hypothetical protein 2329816..2330946 Mycobacterium smegmatis str. MC2 155 4535237 YP_886601.1 CDS MSMEG_2248 NC_008596.1 2330943 2333096 R identified by match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229; two-component system sensor kinase complement(2330943..2333096) Mycobacterium smegmatis str. MC2 155 4531047 YP_886602.1 CDS MSMEG_2250 NC_008596.1 2333091 2333234 D hypothetical protein 2333091..2333234 Mycobacterium smegmatis str. MC2 155 4533377 YP_886603.1 CDS MSMEG_2251 NC_008596.1 2333298 2333648 D identified by match to protein family HMM PF00072; nitrate/nitrite response regulator protein 2333298..2333648 Mycobacterium smegmatis str. MC2 155 4536448 YP_886604.1 CDS MSMEG_2252 NC_008596.1 2333717 2335201 D identified by match to protein family HMM PF01266; match to protein family HMM PF01494; flavin-type hydroxylase 2333717..2335201 Mycobacterium smegmatis str. MC2 155 4532732 YP_886605.1 CDS MSMEG_2253 NC_008596.1 2335246 2335527 R hypothetical protein complement(2335246..2335527) Mycobacterium smegmatis str. MC2 155 4531637 YP_886606.1 CDS MSMEG_2254 NC_008596.1 2335507 2336553 D identified by match to protein family HMM PF00190; match to protein family HMM PF07883; oxalate decarboxylase OxdC 2335507..2336553 Mycobacterium smegmatis str. MC2 155 4536520 YP_886607.1 CDS MSMEG_2255 NC_008596.1 2336583 2338136 R identified by match to protein family HMM PF01039; carboxyl transferase domain-containing protein complement(2336583..2338136) Mycobacterium smegmatis str. MC2 155 4532823 YP_886608.1 CDS MSMEG_2256 NC_008596.1 2338240 2339292 D hypothetical protein 2338240..2339292 Mycobacterium smegmatis str. MC2 155 4531918 YP_886609.1 CDS MSMEG_2257 NC_008596.1 2339303 2340538 D identified by match to protein family HMM PF00067; cytochrome P450-terp 2339303..2340538 Mycobacterium smegmatis str. MC2 155 4536071 YP_886610.1 CDS MSMEG_2258 NC_008596.1 2340549 2340752 R hypothetical protein complement(2340549..2340752) Mycobacterium smegmatis str. MC2 155 4532959 YP_886611.1 CDS MSMEG_2259 NC_008596.1 2340686 2342992 R identified by match to protein family HMM PF02554; carbon starvation protein A complement(2340686..2342992) Mycobacterium smegmatis str. MC2 155 4533565 YP_886612.1 CDS MSMEG_2260 NC_008596.1 2343165 2344226 R identified by match to protein family HMM PF00165; transcriptional regulator complement(2343165..2344226) Mycobacterium smegmatis str. MC2 155 4530825 YP_886613.1 CDS MSMEG_2261 NC_008596.1 2344455 2345024 D hypothetical protein 2344455..2345024 Mycobacterium smegmatis str. MC2 155 4536124 YP_886614.1 CDS hybA NC_008596.1 2345095 2346066 D identified by match to protein family HMM PF01058; hydrogenase-2, small subunit 2345095..2346066 Mycobacterium smegmatis str. MC2 155 4533521 YP_886615.1 CDS hybC NC_008596.1 2346098 2347705 D identified by match to protein family HMM PF00374; hydrogenase-2, large subunit 2346098..2347705 Mycobacterium smegmatis str. MC2 155 4531215 YP_886616.1 CDS MSMEG_2264 NC_008596.1 2347746 2348543 D identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; peptidase M52, hydrogen uptake protein 2347746..2348543 Mycobacterium smegmatis str. MC2 155 4531182 YP_886617.1 CDS MSMEG_2266 NC_008596.1 2348549 2348812 D hypothetical protein 2348549..2348812 Mycobacterium smegmatis str. MC2 155 4532090 YP_886618.1 CDS MSMEG_2265 NC_008596.1 2348802 2350169 R hypothetical protein complement(2348802..2350169) Mycobacterium smegmatis str. MC2 155 4535033 YP_886619.1 CDS MSMEG_2267 NC_008596.1 2348829 2350079 D hypothetical protein 2348829..2350079 Mycobacterium smegmatis str. MC2 155 4535477 YP_886620.1 CDS MSMEG_2268 NC_008596.1 2350076 2350963 D identified by match to protein family HMM PF00355; match to protein family HMM PF01106; hypothetical protein 2350076..2350963 Mycobacterium smegmatis str. MC2 155 4534630 YP_886621.1 CDS MSMEG_2269 NC_008596.1 2350975 2352150 D identified by match to protein family HMM PF01436; hypothetical protein 2350975..2352150 Mycobacterium smegmatis str. MC2 155 4531095 YP_886622.1 CDS MSMEG_2270 NC_008596.1 2352162 2352983 D hypothetical protein 2352162..2352983 Mycobacterium smegmatis str. MC2 155 4533775 YP_886623.1 CDS hypB NC_008596.1 2352990 2353769 R identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073; hydrogenase nickel incorporation protein HypB complement(2352990..2353769) Mycobacterium smegmatis str. MC2 155 4535519 YP_886624.1 CDS hypA NC_008596.1 2353782 2354117 R identified by match to protein family HMM PF01155; hydrogenase nickel incorporation protein HypA complement(2353782..2354117) Mycobacterium smegmatis str. MC2 155 4533211 YP_886625.1 CDS hypF NC_008596.1 2354278 2356566 D identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143; [NiFe] hydrogenase maturation protein HypF 2354278..2356566 Mycobacterium smegmatis str. MC2 155 4534744 YP_886626.1 CDS hypC NC_008596.1 2356566 2356826 D identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase assembly chaperone HypC/HupF 2356566..2356826 Mycobacterium smegmatis str. MC2 155 4537711 YP_886627.1 CDS hypD NC_008596.1 2356823 2357926 D identified by match to protein family HMM PF01924; match to protein family HMM TIGR00075; hydrogenase expression/formation protein HypD 2356823..2357926 Mycobacterium smegmatis str. MC2 155 4531555 YP_886628.1 CDS hypE NC_008596.1 2357919 2358992 D identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124; hydrogenase expression/formation protein HypE 2357919..2358992 Mycobacterium smegmatis str. MC2 155 4532742 YP_886629.1 CDS ligB NC_008596.1 2358993 2360522 R catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase complement(2358993..2360522) Mycobacterium smegmatis str. MC2 155 4536201 YP_886630.1 CDS MSMEG_2278 NC_008596.1 2360646 2362238 R identified by match to protein family HMM PF00174; match to protein family HMM PF03404; membrane-bound oxidoreductase complement(2360646..2362238) Mycobacterium smegmatis str. MC2 155 4531669 YP_886631.1 CDS MSMEG_2279 NC_008596.1 2362387 2363154 D identified by match to protein family HMM PF00106; 3-hydroxyacyl-CoA dehydrogenase 2362387..2363154 Mycobacterium smegmatis str. MC2 155 4534243 YP_886632.1 CDS MSMEG_2280 NC_008596.1 2363217 2364947 D catalyzes the formation of acetate from pyruvate; pyruvate dehydrogenase 2363217..2364947 Mycobacterium smegmatis str. MC2 155 4535320 YP_886633.1 CDS MSMEG_2282 NC_008596.1 2365655 2366356 D identified by similarity to GP:150004; match to protein family HMM PF07929; IS1096, tnpR protein 2365655..2366356 Mycobacterium smegmatis str. MC2 155 4531011 YP_886634.1 CDS MSMEG_2283 NC_008596.1 2366364 2367686 R identified by similarity to GP:150005; match to protein family HMM PF01610; IS1096, tnpA protein complement(2366364..2367686) Mycobacterium smegmatis str. MC2 155 4530866 YP_886635.1 CDS MSMEG_2285 NC_008596.1 2368080 2368895 D identified by match to protein family HMM PF01170; methyltransferase type 11 2368080..2368895 Mycobacterium smegmatis str. MC2 155 4533480 YP_886636.1 CDS MSMEG_2286 NC_008596.1 2368918 2369979 D identified by match to protein family HMM PF01636; aminoglycoside phosphotransferase 2368918..2369979 Mycobacterium smegmatis str. MC2 155 4532786 YP_886637.1 CDS MSMEG_2287 NC_008596.1 2370008 2370769 R identified by match to protein family HMM PF01925; transporter complement(2370008..2370769) Mycobacterium smegmatis str. MC2 155 4536790 YP_886638.1 CDS MSMEG_2288 NC_008596.1 2370961 2371452 D hypothetical protein 2370961..2371452 Mycobacterium smegmatis str. MC2 155 4532661 YP_886639.1 CDS MSMEG_2289 NC_008596.1 2371548 2373032 R identified by match to protein family HMM PF00067; cytochrome p450 complement(2371548..2373032) Mycobacterium smegmatis str. MC2 155 4533533 YP_886640.1 CDS MSMEG_2290 NC_008596.1 2373164 2373823 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2373164..2373823 Mycobacterium smegmatis str. MC2 155 4532071 YP_886641.1 CDS MSMEG_2291 NC_008596.1 2373847 2374710 D identified by match to protein family HMM PF00106; short chain dehydrogenase 2373847..2374710 Mycobacterium smegmatis str. MC2 155 4534616 YP_886642.1 CDS MSMEG_2292 NC_008596.1 2374713 2376248 R identified by match to protein family HMM PF00245; alkaline phosphatase complement(2374713..2376248) Mycobacterium smegmatis str. MC2 155 4536643 YP_886643.1 CDS MSMEG_2293 NC_008596.1 2376350 2377534 R hypothetical protein complement(2376350..2377534) Mycobacterium smegmatis str. MC2 155 4531701 YP_886644.1 CDS dinB NC_008596.1 2377545 2378615 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(2377545..2378615) Mycobacterium smegmatis str. MC2 155 4535986 YP_886645.1 CDS MSMEG_2295 NC_008596.1 2378620 2379234 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(2378620..2379234) Mycobacterium smegmatis str. MC2 155 4533959 YP_886646.1 CDS MSMEG_2296 NC_008596.1 2379342 2379905 D identified by match to protein family HMM PF02525; match to protein family HMM PF03358; hypothetical protein 2379342..2379905 Mycobacterium smegmatis str. MC2 155 4534488 YP_886647.1 CDS MSMEG_2297 NC_008596.1 2380379 2380618 D identified by match to protein family HMM PF00462; match to protein family HMM TIGR02194; glutaredoxin 2380379..2380618 Mycobacterium smegmatis str. MC2 155 4531348 YP_886648.1 CDS MSMEG_2299 NC_008596.1 2381113 2383233 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2381113..2383233 Mycobacterium smegmatis str. MC2 155 4531391 YP_886649.1 CDS MSMEG_2301 NC_008596.1 2384537 2384956 R identified by match to protein family HMM PF00903; glyoxalase/bleomycin resistance protein/dioxygenase complement(2384537..2384956) Mycobacterium smegmatis str. MC2 155 4537024 YP_886650.1 CDS MSMEG_2302 NC_008596.1 2385126 2385353 R hypothetical protein complement(2385126..2385353) Mycobacterium smegmatis str. MC2 155 4532310 YP_886651.1 CDS MSMEG_2303 NC_008596.1 2385228 2386637 D identified by match to protein family HMM PF07690; integral membrane transporter 2385228..2386637 Mycobacterium smegmatis str. MC2 155 4536174 YP_886652.1 CDS MSMEG_2304 NC_008596.1 2386634 2386777 D hypothetical protein 2386634..2386777 Mycobacterium smegmatis str. MC2 155 4536967 YP_886653.1 CDS MSMEG_2306 NC_008596.1 2386828 2387679 D identified by match to protein family HMM PF00583; acetyltransferase 2386828..2387679 Mycobacterium smegmatis str. MC2 155 4534491 YP_886654.1 CDS MSMEG_2305 NC_008596.1 2387651 2388226 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(2387651..2388226) Mycobacterium smegmatis str. MC2 155 4537199 YP_886655.1 CDS MSMEG_2307 NC_008596.1 2388350 2389228 D identified by match to protein family HMM PF00296; hypothetical protein 2388350..2389228 Mycobacterium smegmatis str. MC2 155 4534907 YP_886656.1 CDS MSMEG_2308 NC_008596.1 2389298 2390485 R identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR02032; geranylgeranyl reductase complement(2389298..2390485) Mycobacterium smegmatis str. MC2 155 4537395 YP_886657.1 CDS MSMEG_2309 NC_008596.1 2390636 2391373 D identified by match to protein family HMM PF00440; transcriptional regulatory protein 2390636..2391373 Mycobacterium smegmatis str. MC2 155 4531349 YP_886658.1 CDS MSMEG_2310 NC_008596.1 2391489 2392988 D monooxygenase 2391489..2392988 Mycobacterium smegmatis str. MC2 155 4533140 YP_886659.1 CDS MSMEG_2311 NC_008596.1 2393083 2393598 D hypothetical protein 2393083..2393598 Mycobacterium smegmatis str. MC2 155 4537103 YP_886660.1 CDS MSMEG_2312 NC_008596.1 2393652 2393801 D hypothetical protein 2393652..2393801 Mycobacterium smegmatis str. MC2 155 4535018 YP_886661.1 CDS nrdF2 NC_008596.1 2393815 2394789 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 2393815..2394789 Mycobacterium smegmatis str. MC2 155 4535368 YP_886662.1 CDS MSMEG_2314 NC_008596.1 2394859 2396241 D identified by match to protein family HMM PF00756; esterase 2394859..2396241 Mycobacterium smegmatis str. MC2 155 4533654 YP_886663.1 CDS MSMEG_2315 NC_008596.1 2396241 2397821 D hypothetical protein 2396241..2397821 Mycobacterium smegmatis str. MC2 155 4536255 YP_886664.1 CDS MSMEG_2317 NC_008596.1 2399432 2400481 R identified by match to protein family HMM PF00107; alcohol dehydrogenase complement(2399432..2400481) Mycobacterium smegmatis str. MC2 155 4537072 YP_886665.1 CDS MSMEG_2318 NC_008596.1 2400669 2400944 R identified by match to protein family HMM PF03795; GTP cyclohydrolase II complement(2400669..2400944) Mycobacterium smegmatis str. MC2 155 4537677 YP_886666.1 CDS MSMEG_2319 NC_008596.1 2400954 2402027 R identified by match to protein family HMM PF01497; periplasmic binding protein complement(2400954..2402027) Mycobacterium smegmatis str. MC2 155 4534768 YP_886667.1 CDS serB NC_008596.1 2404009 2405250 D identified by match to protein family HMM PF00702; match to protein family HMM PF01842; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488; phosphoserine phosphatase 2404009..2405250 Mycobacterium smegmatis str. MC2 155 4537335 YP_886668.1 CDS MSMEG_2322 NC_008596.1 2405378 2405671 D hypothetical protein 2405378..2405671 Mycobacterium smegmatis str. MC2 155 4531235 YP_886669.1 CDS MSMEG_2323 NC_008596.1 2405673 2407112 R identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator complement(2405673..2407112) Mycobacterium smegmatis str. MC2 155 4532070 YP_886670.1 CDS MSMEG_2324 NC_008596.1 2407176 2407322 D hypothetical protein 2407176..2407322 Mycobacterium smegmatis str. MC2 155 4532743 YP_886671.1 CDS MSMEG_2325 NC_008596.1 2407319 2408014 D identified by match to protein family HMM PF02588; integral membrane protein 2407319..2408014 Mycobacterium smegmatis str. MC2 155 4536603 YP_886672.1 CDS MSMEG_2326 NC_008596.1 2407969 2408817 D identified by match to protein family HMM PF00005; molybdenum ABC transporter ATPase 2407969..2408817 Mycobacterium smegmatis str. MC2 155 4536654 YP_886673.1 CDS MSMEG_2327 NC_008596.1 2408810 2409631 D identified by match to protein family HMM PF00293; nudix hydrolase 2408810..2409631 Mycobacterium smegmatis str. MC2 155 4536738 YP_886674.1 CDS MSMEG_2328 NC_008596.1 2409628 2410335 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2409628..2410335 Mycobacterium smegmatis str. MC2 155 4536337 YP_886675.1 CDS MSMEG_2329 NC_008596.1 2410370 2411350 D UbiE/COQ5 family methyltransferase 2410370..2411350 Mycobacterium smegmatis str. MC2 155 4533400 YP_886676.1 CDS MSMEG_2330 NC_008596.1 2411359 2412522 D SAM-dependent methyltransferase 2411359..2412522 Mycobacterium smegmatis str. MC2 155 4535658 YP_886677.1 CDS MSMEG_2331 NC_008596.1 2412595 2413296 D hypothetical protein 2412595..2413296 Mycobacterium smegmatis str. MC2 155 4532579 YP_886678.1 CDS MSMEG_2332 NC_008596.1 2413328 2414872 R identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; amino acid carrier protein complement(2413328..2414872) Mycobacterium smegmatis str. MC2 155 4531176 YP_886679.1 CDS MSMEG_2334 NC_008596.1 2414879 2415001 D hypothetical protein 2414879..2415001 Mycobacterium smegmatis str. MC2 155 4533652 YP_886680.1 CDS MSMEG_2333 NC_008596.1 2414990 2416273 R hypothetical protein complement(2414990..2416273) Mycobacterium smegmatis str. MC2 155 4534242 YP_886681.1 CDS MSMEG_2335 NC_008596.1 2416370 2417113 D identified by match to protein family HMM PF00132; hexapeptide transferase 2416370..2417113 Mycobacterium smegmatis str. MC2 155 4532393 YP_886682.1 CDS fni NC_008596.1 2417887 2418912 D catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 2417887..2418912 Mycobacterium smegmatis str. MC2 155 4537377 YP_886683.1 CDS MSMEG_2338 NC_008596.1 2418945 2419571 D identified by similarity to GP:150004; match to protein family HMM PF07929; IS1096, tnpR protein 2418945..2419571 Mycobacterium smegmatis str. MC2 155 4532718 YP_886684.1 CDS MSMEG_2339 NC_008596.1 2419579 2420901 R identified by similarity to GP:150005; match to protein family HMM PF01610; IS1096, tnpA protein complement(2419579..2420901) Mycobacterium smegmatis str. MC2 155 4531837 YP_886685.1 CDS MSMEG_2340 NC_008596.1 2420692 2421201 D hypothetical protein 2420692..2421201 Mycobacterium smegmatis str. MC2 155 4530847 YP_886686.1 CDS MSMEG_2342 NC_008596.1 2421207 2422448 D identified by match to protein family HMM PF00201; match to protein family HMM PF03033; match to protein family HMM TIGR01426; glycosyltransferase 2421207..2422448 Mycobacterium smegmatis str. MC2 155 4530920 YP_886687.1 CDS MSMEG_2341 NC_008596.1 2422408 2422818 R hypothetical protein complement(2422408..2422818) Mycobacterium smegmatis str. MC2 155 4533714 YP_886688.1 CDS MSMEG_2343 NC_008596.1 2422826 2423842 R identified by match to protein family HMM PF00355; methylesterase complement(2422826..2423842) Mycobacterium smegmatis str. MC2 155 4531678 YP_886689.1 CDS MSMEG_2344 NC_008596.1 2423839 2425356 R identified by match to protein family HMM PF01266; match to protein family HMM PF01593; dehydrogenase complement(2423839..2425356) Mycobacterium smegmatis str. MC2 155 4537171 YP_886690.1 CDS MSMEG_2346 NC_008596.1 2426030 2426977 R identified by match to protein family HMM PF00494; phytoene synthase complement(2426030..2426977) Mycobacterium smegmatis str. MC2 155 4536093 YP_886691.1 CDS MSMEG_2347 NC_008596.1 2426974 2428527 R identified by match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734; phytoene dehydrogenase complement(2426974..2428527) Mycobacterium smegmatis str. MC2 155 4531857 YP_886692.1 CDS MSMEG_2349 NC_008596.1 2430027 2431571 R identified by match to protein family HMM PF03065; glycosyl hydrolase family protein complement(2430027..2431571) Mycobacterium smegmatis str. MC2 155 4532242 YP_886693.1 CDS MSMEG_2350 NC_008596.1 2431568 2432341 R hypothetical protein complement(2431568..2432341) Mycobacterium smegmatis str. MC2 155 4535839 YP_886694.1 CDS etfB NC_008596.1 2432570 2433361 D identified by similarity to SP:O85691; match to protein family HMM PF01012; electron transfer flavoprotein subunit beta 2432570..2433361 Mycobacterium smegmatis str. MC2 155 4531546 YP_886695.1 CDS etfA NC_008596.1 2433444 2434385 D identified by similarity to SP:P38974; match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha 2433444..2434385 Mycobacterium smegmatis str. MC2 155 4534885 YP_886696.1 CDS MSMEG_2353 NC_008596.1 2434550 2435293 D identified by match to protein family HMM PF01113; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; hypothetical protein 2434550..2435293 Mycobacterium smegmatis str. MC2 155 4534873 YP_886697.1 CDS MSMEG_2354 NC_008596.1 2435295 2435942 D identified by match to protein family HMM PF00881; oxidoreductase 2435295..2435942 Mycobacterium smegmatis str. MC2 155 4537405 YP_886698.1 CDS MSMEG_2355 NC_008596.1 2436064 2436912 D hypothetical protein 2436064..2436912 Mycobacterium smegmatis str. MC2 155 4532361 YP_886699.1 CDS MSMEG_2356 NC_008596.1 2436909 2437739 D identified by match to protein family HMM PF01553; acyltransferase 2436909..2437739 Mycobacterium smegmatis str. MC2 155 4531393 YP_886700.1 CDS MSMEG_2357 NC_008596.1 2437787 2438995 D identified by match to protein family HMM PF00266; match to protein family HMM PF01212; cysteine desulfurase 2437787..2438995 Mycobacterium smegmatis str. MC2 155 4533600 YP_886701.1 CDS mnmA NC_008596.1 2438992 2440062 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2438992..2440062 Mycobacterium smegmatis str. MC2 155 4534866 YP_886702.1 CDS MSMEG_2359 NC_008596.1 2440088 2441098 D identified by match to protein family HMM PF01717; methionine synthase, vitamin-B12 independent 2440088..2441098 Mycobacterium smegmatis str. MC2 155 4537269 YP_886703.1 CDS MSMEG_2360 NC_008596.1 2441100 2442674 R identified by match to protein family HMM PF00501; 4-coumarate--CoA ligase complement(2441100..2442674) Mycobacterium smegmatis str. MC2 155 4537213 YP_886704.1 CDS MSMEG_2361 NC_008596.1 2442671 2443087 R phosphoribosylglycinamide formyltransferase complement(2442671..2443087) Mycobacterium smegmatis str. MC2 155 4532408 YP_886705.1 CDS ligA NC_008596.1 2443172 2445277 D this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 2443172..2445277 Mycobacterium smegmatis str. MC2 155 4535192 YP_886706.1 CDS MSMEG_2363 NC_008596.1 2445348 2446007 R identified by match to protein family HMM PF01842; amino acid-binding protein complement(2445348..2446007) Mycobacterium smegmatis str. MC2 155 4536549 YP_886707.1 CDS gatC NC_008596.1 2446108 2446407 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 2446108..2446407 Mycobacterium smegmatis str. MC2 155 4530835 YP_886708.1 CDS gatA NC_008596.1 2446404 2447888 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 2446404..2447888 Mycobacterium smegmatis str. MC2 155 4533829 YP_004191801.1 CDS MSMEG_2366 NC_008596.1 2447932 >2448964 D 6-phosphofructokinase 2447932..>2448964 Mycobacterium smegmatis str. MC2 155 4536564 YP_886709.1 CDS gatB NC_008596.1 2449026 2450537 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 2449026..2450537 Mycobacterium smegmatis str. MC2 155 4532486 YP_886710.1 CDS MSMEG_2368 NC_008596.1 2450596 2451234 R identified by match to protein family HMM PF00440; transcriptional regulator complement(2450596..2451234) Mycobacterium smegmatis str. MC2 155 4531009 YP_886711.1 CDS MSMEG_2369 NC_008596.1 2451352 2452446 R LppZ protein complement(2451352..2452446) Mycobacterium smegmatis str. MC2 155 4533051 YP_886712.1 CDS MSMEG_2370 NC_008596.1 2452620 2453462 D identified by match to protein family HMM PF07681; DoxX subfamily protein 2452620..2453462 Mycobacterium smegmatis str. MC2 155 4535878 YP_886713.1 CDS MSMEG_2371 NC_008596.1 2453493 2453882 R low molecular weight protein antigen 6 complement(2453493..2453882) Mycobacterium smegmatis str. MC2 155 4533651 YP_886714.1 CDS ilvB NC_008596.1 2454205 2456061 D acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase 1 catalytic subunit 2454205..2456061 Mycobacterium smegmatis str. MC2 155 4531210 YP_886715.1 CDS ilvH NC_008596.1 2456125 2456637 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2456125..2456637 Mycobacterium smegmatis str. MC2 155 4532109 YP_886716.1 CDS ilvC NC_008596.1 2456694 2457707 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 2456694..2457707 Mycobacterium smegmatis str. MC2 155 4533720 YP_886717.1 CDS wrbA NC_008596.1 2457779 2458390 R identified by match to protein family HMM PF00258; match to protein family HMM PF03358; match to protein family HMM TIGR01755; NAD(P)H:quinone oxidoreductase, type IV complement(2457779..2458390) Mycobacterium smegmatis str. MC2 155 4537349 YP_886718.1 CDS MSMEG_2376 NC_008596.1 2458418 2458879 R hypothetical protein complement(2458418..2458879) Mycobacterium smegmatis str. MC2 155 4532933 YP_886719.1 CDS MSMEG_2377 NC_008596.1 2458912 2460336 R P49 protein complement(2458912..2460336) Mycobacterium smegmatis str. MC2 155 4535812 YP_886720.1 CDS serA NC_008596.1 2460414 2462000 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 2460414..2462000 Mycobacterium smegmatis str. MC2 155 4534426 YP_886721.1 CDS leuB NC_008596.1 2461997 2463019 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 2461997..2463019 Mycobacterium smegmatis str. MC2 155 4534280 YP_886722.1 CDS MSMEG_2380 NC_008596.1 2463113 2464348 R identified by match to protein family HMM PF07690; sugar transporter family protein complement(2463113..2464348) Mycobacterium smegmatis str. MC2 155 4531020 YP_886723.1 CDS MSMEG_2381 NC_008596.1 2464399 2465580 D hypothetical protein 2464399..2465580 Mycobacterium smegmatis str. MC2 155 4534033 YP_886724.1 CDS MSMEG_2382 NC_008596.1 2465631 2466410 D identified by match to protein family HMM PF01557; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 2465631..2466410 Mycobacterium smegmatis str. MC2 155 4531468 YP_886725.1 CDS gltX NC_008596.1 2466407 2467867 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 2466407..2467867 Mycobacterium smegmatis str. MC2 155 4533604 YP_886726.1 CDS MSMEG_2386 NC_008596.1 2468381 2469082 R identified by match to protein family HMM PF01614; IclR family transcriptional regulator complement(2468381..2469082) Mycobacterium smegmatis str. MC2 155 4534213 YP_886727.1 CDS leuC NC_008596.1 2469194 2470648 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 2469194..2470648 Mycobacterium smegmatis str. MC2 155 4535787 YP_886728.1 CDS leuD NC_008596.1 2470672 2471265 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 2470672..2471265 Mycobacterium smegmatis str. MC2 155 4536114 YP_886729.1 CDS hup NC_008596.1 2471469 2472095 D identified by match to protein family HMM PF00216; DNA-binding protein HU 2471469..2472095 Mycobacterium smegmatis str. MC2 155 4534852 YP_886730.1 CDS MSMEG_2390 NC_008596.1 2472156 2473124 R identified by match to protein family HMM PF00293; match to protein family HMM PF00300; NUDIX family hydrolase complement(2472156..2473124) Mycobacterium smegmatis str. MC2 155 4536888 YP_886731.1 CDS ppk NC_008596.1 2473142 2475352 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(2473142..2475352) Mycobacterium smegmatis str. MC2 155 4532726 YP_886732.1 CDS MSMEG_2392 NC_008596.1 2475381 2476046 R identified by match to protein family HMM PF01983; hypothetical protein complement(2475381..2476046) Mycobacterium smegmatis str. MC2 155 4535871 YP_886733.1 CDS gpsA NC_008596.1 2476113 2477108 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 2476113..2477108 Mycobacterium smegmatis str. MC2 155 4531641 YP_886734.1 CDS MSMEG_2394 NC_008596.1 2477113 2478222 D catalyzes the formation of cysteine and 2-oxobutanoate from cystathionine; cystathionine gamma-lyase 2477113..2478222 Mycobacterium smegmatis str. MC2 155 4534485 YP_886735.1 CDS ddl NC_008596.1 2478371 2479492 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 2478371..2479492 Mycobacterium smegmatis str. MC2 155 4532086 YP_886736.1 CDS MSMEG_2396 NC_008596.1 2479493 2480080 R hypothetical protein complement(2479493..2480080) Mycobacterium smegmatis str. MC2 155 4537131 YP_886737.1 CDS MSMEG_2397 NC_008596.1 2480097 2480333 R identified by match to protein family HMM PF01037; AsnC family transcriptional regulator complement(2480097..2480333) Mycobacterium smegmatis str. MC2 155 4537652 YP_886738.1 CDS thiL NC_008596.1 2480440 2481453 D catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 2480440..2481453 Mycobacterium smegmatis str. MC2 155 4536473 YP_886739.1 CDS ung NC_008596.1 2481480 2482163 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 2481480..2482163 Mycobacterium smegmatis str. MC2 155 4535802 YP_886740.1 CDS MSMEG_2401 NC_008596.1 2482174 2482803 D hypothetical protein 2482174..2482803 Mycobacterium smegmatis str. MC2 155 4531245 YP_886741.1 CDS rpmB NC_008596.1 2482555 2482749 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(2482555..2482749) Mycobacterium smegmatis str. MC2 155 4535318 YP_886742.1 CDS MSMEG_2402 NC_008596.1 2482984 2484648 D identified by match to protein family HMM PF02734; dihydroxyacetone kinase 2482984..2484648 Mycobacterium smegmatis str. MC2 155 4533846 YP_886743.1 CDS recG NC_008596.1 2484645 2486906 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 2484645..2486906 Mycobacterium smegmatis str. MC2 155 4537254 YP_886744.1 CDS MSMEG_2404 NC_008596.1 2486903 2487607 D extracellular deoxyribonuclease 2486903..2487607 Mycobacterium smegmatis str. MC2 155 4533401 YP_886745.1 CDS MSMEG_2405 NC_008596.1 2487622 2488116 R identified by match to protein family HMM PF00583; MarR family transcriptional regulator complement(2487622..2488116) Mycobacterium smegmatis str. MC2 155 4532320 YP_886746.1 CDS MSMEG_2406 NC_008596.1 2488188 2488766 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2488188..2488766 Mycobacterium smegmatis str. MC2 155 4534238 YP_886747.1 CDS MSMEG_2407 NC_008596.1 2488797 2489648 R identified by match to protein family HMM PF00248; morphine 6-dehydrogenase complement(2488797..2489648) Mycobacterium smegmatis str. MC2 155 4534133 YP_886748.1 CDS MSMEG_2408 NC_008596.1 2489654 2490481 R identified by match to protein family HMM PF00248; 2,5-diketo-D-gluconate reductase A complement(2489654..2490481) Mycobacterium smegmatis str. MC2 155 4536409 YP_886749.1 CDS MSMEG_2409 NC_008596.1 2490579 2491631 D identified by match to protein family HMM PF07859; alpha/beta hydrolase 2490579..2491631 Mycobacterium smegmatis str. MC2 155 4533580 YP_886750.1 CDS MSMEG_2410 NC_008596.1 2491665 2492393 D serine-threonine protein kinase 2491665..2492393 Mycobacterium smegmatis str. MC2 155 4532783 YP_886751.1 CDS MSMEG_2411 NC_008596.1 2492393 2493025 D identified by match to protein family HMM PF07884; integral membrane protein 2492393..2493025 Mycobacterium smegmatis str. MC2 155 4531466 YP_886752.1 CDS pyc NC_008596.1 2493061 2496444 D biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 2493061..2496444 Mycobacterium smegmatis str. MC2 155 4533162 YP_886753.1 CDS MSMEG_2413 NC_008596.1 2496486 2496995 D identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; methyltransferase 2496486..2496995 Mycobacterium smegmatis str. MC2 155 4530960 YP_886754.1 CDS coaD NC_008596.1 2497021 2497497 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 2497021..2497497 Mycobacterium smegmatis str. MC2 155 4534142 YP_886755.1 CDS MSMEG_2415 NC_008596.1 2497580 2498158 D identified by match to protein family HMM PF01814; hemerythrin HHE cation binding protein 2497580..2498158 Mycobacterium smegmatis str. MC2 155 4536073 YP_886756.1 CDS MSMEG_2416 NC_008596.1 2498281 2499018 D hypothetical protein 2498281..2499018 Mycobacterium smegmatis str. MC2 155 4536007 YP_886757.1 CDS MSMEG_2417 NC_008596.1 2499088 2499699 D identified by match to protein family HMM PF02620; hypothetical protein 2499088..2499699 Mycobacterium smegmatis str. MC2 155 4534779 YP_886758.1 CDS rnc NC_008596.1 2499696 2500388 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 2499696..2500388 Mycobacterium smegmatis str. MC2 155 4531140 YP_886759.1 CDS mutM NC_008596.1 2500395 2501252 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 2500395..2501252 Mycobacterium smegmatis str. MC2 155 4537159 YP_886760.1 CDS MSMEG_2420 NC_008596.1 2501271 2502047 R hypothetical protein complement(2501271..2502047) Mycobacterium smegmatis str. MC2 155 4532221 YP_886761.1 CDS MSMEG_2421 NC_008596.1 2502168 2502587 D identified by match to protein family HMM PF02566; hypothetical protein 2502168..2502587 Mycobacterium smegmatis str. MC2 155 4535733 YP_886762.1 CDS MSMEG_2422 NC_008596.1 2502584 2502880 D identified by match to protein family HMM PF00708; acylphosphatase 2502584..2502880 Mycobacterium smegmatis str. MC2 155 4534310 YP_886763.1 CDS smc NC_008596.1 2502907 2506494 D identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR02168; chromosome segregation protein SMC 2502907..2506494 Mycobacterium smegmatis str. MC2 155 4531338 YP_886764.1 CDS ftsY NC_008596.1 2506567 2508042 D identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY 2506567..2508042 Mycobacterium smegmatis str. MC2 155 4530842 YP_886765.1 CDS amt NC_008596.1 2508282 2509631 D identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter 2508282..2509631 Mycobacterium smegmatis str. MC2 155 4532106 YP_886766.1 CDS MSMEG_2426 NC_008596.1 2509665 2510003 D identified by match to protein family HMM PF00543; nitrogen regulatory protein P-II 2509665..2510003 Mycobacterium smegmatis str. MC2 155 4537573 YP_886767.1 CDS glnD NC_008596.1 2510091 2512565 D catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; also involved in adenylylating and deadelnylyating GlnK; PII uridylyl-transferase 2510091..2512565 Mycobacterium smegmatis str. MC2 155 4533814 YP_886768.1 CDS MSMEG_2428 NC_008596.1 2512566 2513411 R DNA-binding protein complement(2512566..2513411) Mycobacterium smegmatis str. MC2 155 4531057 YP_886769.1 CDS MSMEG_2429 NC_008596.1 2513512 2514516 D identified by match to protein family HMM PF00248; aldo/keto reductase 2513512..2514516 Mycobacterium smegmatis str. MC2 155 4536975 YP_886770.1 CDS ffh NC_008596.1 2514582 2516150 D identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 2514582..2516150 Mycobacterium smegmatis str. MC2 155 4532916 YP_886771.1 CDS MSMEG_2431 NC_008596.1 2516150 2517226 D identified by match to protein family HMM PF01979; amidohydrolase 2516150..2517226 Mycobacterium smegmatis str. MC2 155 4537249 YP_886772.1 CDS MSMEG_2432 NC_008596.1 2517308 2518135 R identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase complement(2517308..2518135) Mycobacterium smegmatis str. MC2 155 4532208 YP_886773.1 CDS MSMEG_2433 NC_008596.1 2518205 2519095 R identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase complement(2518205..2519095) Mycobacterium smegmatis str. MC2 155 4536828 YP_886774.1 CDS MSMEG_2434 NC_008596.1 2519128 2519562 D hypothetical protein 2519128..2519562 Mycobacterium smegmatis str. MC2 155 4531924 YP_886775.1 CDS rpsP NC_008596.1 2519767 2520237 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 2519767..2520237 Mycobacterium smegmatis str. MC2 155 4533080 YP_886776.1 CDS MSMEG_2436 NC_008596.1 2520258 2520488 D hypothetical protein 2520258..2520488 Mycobacterium smegmatis str. MC2 155 4534776 YP_886777.1 CDS rimM NC_008596.1 2520523 2521044 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 2520523..2521044 Mycobacterium smegmatis str. MC2 155 4537259 YP_886778.1 CDS trmD NC_008596.1 2521059 2521736 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 2521059..2521736 Mycobacterium smegmatis str. MC2 155 4534479 YP_886779.1 CDS MSMEG_2439 NC_008596.1 2521737 2522681 R LppW protein complement(2521737..2522681) Mycobacterium smegmatis str. MC2 155 4536379 YP_886780.1 CDS rplS NC_008596.1 2523015 2523356 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 2523015..2523356 Mycobacterium smegmatis str. MC2 155 4535655 YP_886781.1 CDS lepB NC_008596.1 2523424 2524293 D identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 2523424..2524293 Mycobacterium smegmatis str. MC2 155 4536823 YP_886782.1 CDS rnhB NC_008596.1 2524304 2525122 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 2524304..2525122 Mycobacterium smegmatis str. MC2 155 4536492 YP_886783.1 CDS MSMEG_2443 NC_008596.1 2525199 2525504 D hypothetical protein 2525199..2525504 Mycobacterium smegmatis str. MC2 155 4536347 YP_886784.1 CDS MSMEG_2444 NC_008596.1 2525519 2526229 R identified by match to protein family HMM PF01738; dienelactone hydrolase complement(2525519..2526229) Mycobacterium smegmatis str. MC2 155 4534232 YP_886785.1 CDS MSMEG_2445 NC_008596.1 2526276 2527730 R identified by match to protein family HMM PF02696; hypothetical protein complement(2526276..2527730) Mycobacterium smegmatis str. MC2 155 4532287 YP_886786.1 CDS MSMEG_2446 NC_008596.1 2527780 2528202 R hypothetical protein complement(2527780..2528202) Mycobacterium smegmatis str. MC2 155 4536902 YP_886787.1 CDS MSMEG_2447 NC_008596.1 2528276 2529892 R identified by match to protein family HMM PF07905; regulatory protein complement(2528276..2529892) Mycobacterium smegmatis str. MC2 155 4534226 YP_886788.1 CDS MSMEG_2448 NC_008596.1 2529889 2530023 R hypothetical protein complement(2529889..2530023) Mycobacterium smegmatis str. MC2 155 4536914 YP_886789.1 CDS mmsA NC_008596.1 2530003 2531496 D identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722; methylmalonate-semialdehyde dehydrogenase 2530003..2531496 Mycobacterium smegmatis str. MC2 155 4532727 YP_886790.1 CDS MSMEG_2450 NC_008596.1 2531510 2532895 D identified by match to protein family HMM PF00202; hypothetical protein 2531510..2532895 Mycobacterium smegmatis str. MC2 155 4537742 YP_886791.1 CDS MSMEG_2451 NC_008596.1 2533009 2533785 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460; HAD-superfamily hydrolase 2533009..2533785 Mycobacterium smegmatis str. MC2 155 4531369 YP_886792.1 CDS MSMEG_2452 NC_008596.1 2533824 2534033 D hypothetical protein 2533824..2534033 Mycobacterium smegmatis str. MC2 155 4531320 YP_886793.1 CDS MSMEG_2453 NC_008596.1 2534312 2535046 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 2534312..2535046 Mycobacterium smegmatis str. MC2 155 4532912 YP_886794.1 CDS MSMEG_2454 NC_008596.1 2535043 2535504 D identified by match to protein family HMM PF01042; translation initiation inhibitor 2535043..2535504 Mycobacterium smegmatis str. MC2 155 4535137 YP_886795.1 CDS MSMEG_2455 NC_008596.1 2535507 2536103 R identified by match to protein family HMM PF06240; carbon monoxide dehydrogenase subunit G (CoxG) superfamily protein complement(2535507..2536103) Mycobacterium smegmatis str. MC2 155 4531458 YP_886796.1 CDS MSMEG_2456 NC_008596.1 2536199 2537197 D identified by match to protein family HMM PF00296; 5,10-methylenetetrahydromethanopterin reductase 2536199..2537197 Mycobacterium smegmatis str. MC2 155 4534585 YP_886797.1 CDS MSMEG_2457 NC_008596.1 2537190 2537507 D hypothetical protein 2537190..2537507 Mycobacterium smegmatis str. MC2 155 4535745 YP_886798.1 CDS MSMEG_2458 NC_008596.1 2537542 2538522 D hypothetical protein 2537542..2538522 Mycobacterium smegmatis str. MC2 155 4532156 YP_886799.1 CDS MSMEG_2459 NC_008596.1 2538553 2539353 D identified by match to protein family HMM PF00005; transporter ATPase 2538553..2539353 Mycobacterium smegmatis str. MC2 155 4532761 YP_886800.1 CDS MSMEG_2460 NC_008596.1 2539350 2540198 D identified by match to protein family HMM PF00528; transporter permease 2539350..2540198 Mycobacterium smegmatis str. MC2 155 4534941 YP_886801.1 CDS MSMEG_2461 NC_008596.1 2540195 2540983 D identified by match to protein family HMM PF00528; transporter permease 2540195..2540983 Mycobacterium smegmatis str. MC2 155 4535538 YP_886802.1 CDS MSMEG_2462 NC_008596.1 2540980 2543313 D identified by match to protein family HMM PF01315; match to protein family HMM PF02738; carbon-monoxide dehydrogenase 2540980..2543313 Mycobacterium smegmatis str. MC2 155 4533843 YP_886803.1 CDS MSMEG_2463 NC_008596.1 2543310 2544191 D identified by match to protein family HMM PF00941; nicotine dehydrogenase chain A 2543310..2544191 Mycobacterium smegmatis str. MC2 155 4532019 YP_886804.1 CDS MSMEG_2464 NC_008596.1 2544178 2544684 D identified by match to protein family HMM PF00111; match to protein family HMM PF01799; 2Fe-2S-binding domain-containing protein 2544178..2544684 Mycobacterium smegmatis str. MC2 155 4533680 YP_886805.1 CDS MSMEG_2465 NC_008596.1 2544747 2545967 D identified by match to protein family HMM PF01979; match to protein family HMM PF07969; adenine deaminase 2544747..2545967 Mycobacterium smegmatis str. MC2 155 4533036 YP_886806.1 CDS MSMEG_2466 NC_008596.1 2546004 2547203 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; glutaryl-CoA dehydrogenase 2546004..2547203 Mycobacterium smegmatis str. MC2 155 4532861 YP_886807.1 CDS MSMEG_2467 NC_008596.1 2547242 2549401 D identified by match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM PF02780; transketolase, central region 2547242..2549401 Mycobacterium smegmatis str. MC2 155 4536099 YP_886808.1 CDS MSMEG_2468 NC_008596.1 2549414 2550649 D identified by match to protein family HMM PF02515; L-carnitine dehydratase/bile acid-inducible protein F 2549414..2550649 Mycobacterium smegmatis str. MC2 155 4532873 YP_886809.1 CDS MSMEG_2470 NC_008596.1 2550646 2551455 D identified by match to protein family HMM PF02551; acyl-CoA thioesterase 2550646..2551455 Mycobacterium smegmatis str. MC2 155 4535002 YP_886810.1 CDS MSMEG_2469 NC_008596.1 2551339 2553918 R identified by match to protein family HMM PF00501; match to protein family HMM PF00550; AMP-dependent synthetase/ligase complement(2551339..2553918) Mycobacterium smegmatis str. MC2 155 4534356 YP_886811.1 CDS MSMEG_2471 NC_008596.1 2554008 2556437 R identified by match to protein family HMM PF02779; match to protein family HMM PF02780; pyruvate dehydrogenase subunit alpha complement(2554008..2556437) Mycobacterium smegmatis str. MC2 155 4531588 YP_886812.1 CDS MSMEG_2472 NC_008596.1 2556536 2557012 D identified by match to protein family HMM PF01037; AsnC family transcriptional regulator 2556536..2557012 Mycobacterium smegmatis str. MC2 155 4536015 YP_886813.1 CDS MSMEG_2474 NC_008596.1 2558654 2559433 D identified by match to protein family HMM PF01083; match to protein family HMM PF02230; cutinase Cut3 2558654..2559433 Mycobacterium smegmatis str. MC2 155 4537200 YP_886814.1 CDS MSMEG_2475 NC_008596.1 2559495 2560349 R identified by match to protein family HMM PF00248; oxidoreductase YdbC complement(2559495..2560349) Mycobacterium smegmatis str. MC2 155 4531091 YP_886815.1 CDS MSMEG_2476 NC_008596.1 2560435 2560866 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(2560435..2560866) Mycobacterium smegmatis str. MC2 155 4535421 YP_886816.1 CDS MSMEG_2477 NC_008596.1 2560939 2562006 R identified by match to protein family HMM PF00106; cyclopentanol dehydrogenase complement(2560939..2562006) Mycobacterium smegmatis str. MC2 155 4533941 YP_886817.1 CDS MSMEG_2478 NC_008596.1 2562032 2562889 R identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase complement(2562032..2562889) Mycobacterium smegmatis str. MC2 155 4532459 YP_886818.1 CDS MSMEG_2479 NC_008596.1 2562764 2562925 D hypothetical protein 2562764..2562925 Mycobacterium smegmatis str. MC2 155 4532800 YP_886819.1 CDS MSMEG_2480 NC_008596.1 2562958 2563698 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 2562958..2563698 Mycobacterium smegmatis str. MC2 155 4537631 YP_886820.1 CDS MSMEG_2481 NC_008596.1 2563709 2564953 D hypothetical protein 2563709..2564953 Mycobacterium smegmatis str. MC2 155 4536070 YP_886821.1 CDS MSMEG_2482 NC_008596.1 2565001 2565369 D hypothetical protein 2565001..2565369 Mycobacterium smegmatis str. MC2 155 4531754 YP_886822.1 CDS MSMEG_2483 NC_008596.1 2565362 2566084 D identified by match to protein family HMM PF01614; IclR family transcriptional regulator 2565362..2566084 Mycobacterium smegmatis str. MC2 155 4537651 YP_886823.1 CDS MSMEG_2484 NC_008596.1 2566112 2566801 R hypothetical protein complement(2566112..2566801) Mycobacterium smegmatis str. MC2 155 4532328 YP_886824.1 CDS mhpA NC_008596.1 2566837 2568444 R catalyzes the formation of 3-(2,3-dihydroxyphenyl)propionate from 3-(3-hydroxyphenyl)propionate; 3-(3-hydroxyphenyl)propionate hydroxylase complement(2566837..2568444) Mycobacterium smegmatis str. MC2 155 4535181 YP_886825.1 CDS MSMEG_2486 NC_008596.1 2568753 2570159 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator superfamily protein 2568753..2570159 Mycobacterium smegmatis str. MC2 155 4537080 YP_886826.1 CDS MSMEG_2487 NC_008596.1 2570219 2571472 R identified by match to protein family HMM PF00202; 4-aminobutyrate aminotransferase complement(2570219..2571472) Mycobacterium smegmatis str. MC2 155 4533529 YP_886827.1 CDS MSMEG_2488 NC_008596.1 2571561 2573021 D identified by match to protein family HMM PF00171; [NADP+] succinate-semialdehyde dehydrogenase 2571561..2573021 Mycobacterium smegmatis str. MC2 155 4536774 YP_886828.1 CDS MSMEG_2489 NC_008596.1 2573037 2573759 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator complement(2573037..2573759) Mycobacterium smegmatis str. MC2 155 4537605 YP_886829.1 CDS MSMEG_2490 NC_008596.1 2573756 2574385 R identified by match to protein family HMM PF01177; decarboxylase complement(2573756..2574385) Mycobacterium smegmatis str. MC2 155 4537222 YP_886830.1 CDS MSMEG_2492 NC_008596.1 2574544 2577402 D identified by match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913; D-lactate dehydrogenase 2574544..2577402 Mycobacterium smegmatis str. MC2 155 4532064 YP_886831.1 CDS MSMEG_2491 NC_008596.1 2577399 2578571 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01910; acetylornithine deacetylase complement(2577399..2578571) Mycobacterium smegmatis str. MC2 155 4534127 YP_886832.1 CDS MSMEG_2493 NC_008596.1 2578576 2579775 R identified by match to protein family HMM PF00155; aminotransferase, class I and II family protein complement(2578576..2579775) Mycobacterium smegmatis str. MC2 155 4535980 YP_886833.1 CDS MSMEG_2494 NC_008596.1 2579779 2580945 R identified by match to protein family HMM PF00557; Xaa-Pro aminopeptidase complement(2579779..2580945) Mycobacterium smegmatis str. MC2 155 4535349 YP_886834.1 CDS MSMEG_2495 NC_008596.1 2580942 2581646 R identified by match to protein family HMM PF01177; decarboxylase complement(2580942..2581646) Mycobacterium smegmatis str. MC2 155 4534810 YP_886835.1 CDS MSMEG_2496 NC_008596.1 2581723 2582772 D identified by match to protein family HMM PF00389; match to protein family HMM PF02826; NAD-binding protein 2581723..2582772 Mycobacterium smegmatis str. MC2 155 4537229 YP_886836.1 CDS MSMEG_2497 NC_008596.1 2582769 2584172 D identified by match to protein family HMM PF01425; amidase 2582769..2584172 Mycobacterium smegmatis str. MC2 155 4535562 YP_886837.1 CDS MSMEG_2498 NC_008596.1 2584169 2584669 D hypothetical protein 2584169..2584669 Mycobacterium smegmatis str. MC2 155 4533248 YP_886838.1 CDS MSMEG_2500 NC_008596.1 2584688 2585911 D hypothetical protein 2584688..2585911 Mycobacterium smegmatis str. MC2 155 4535117 YP_886839.1 CDS MSMEG_2499 NC_008596.1 2585908 2586690 R identified by match to protein family HMM PF00528; ABC transporter complement(2585908..2586690) Mycobacterium smegmatis str. MC2 155 4532212 YP_886840.1 CDS MSMEG_2501 NC_008596.1 2586687 2587553 R identified by match to protein family HMM PF00528; nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein complement(2586687..2587553) Mycobacterium smegmatis str. MC2 155 4532882 YP_886841.1 CDS MSMEG_2502 NC_008596.1 2587550 2588344 R identified by match to protein family HMM PF00005; transporter ATPase complement(2587550..2588344) Mycobacterium smegmatis str. MC2 155 4531243 YP_886842.1 CDS MSMEG_2503 NC_008596.1 2588395 2589414 R hypothetical protein complement(2588395..2589414) Mycobacterium smegmatis str. MC2 155 4536432 YP_886843.1 CDS MSMEG_2504 NC_008596.1 2589424 2589951 R identified by match to protein family HMM TIGR02087; 3-isopropylmalate dehydratase small subunit complement(2589424..2589951) Mycobacterium smegmatis str. MC2 155 4534588 YP_886844.1 CDS MSMEG_2505 NC_008596.1 2589951 2591192 R identified by match to protein family HMM PF00330; 3-isopropylmalate dehydratase large subunit complement(2589951..2591192) Mycobacterium smegmatis str. MC2 155 4536097 YP_886845.1 CDS MSMEG_2506 NC_008596.1 2591193 2592062 R carboxyvinyl-carboxyphosphonate phosphorylmutase complement(2591193..2592062) Mycobacterium smegmatis str. MC2 155 4535133 YP_886846.1 CDS MSMEG_2507 NC_008596.1 2592063 2592839 R identified by match to protein family HMM PF01614; IclR-family protein transcriptional regulator complement(2592063..2592839) Mycobacterium smegmatis str. MC2 155 4531605 YP_886847.1 CDS MSMEG_2508 NC_008596.1 2593267 2593641 D identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252; hypothetical protein 2593267..2593641 Mycobacterium smegmatis str. MC2 155 4537110 YP_886848.1 CDS MSMEG_2509 NC_008596.1 2593697 2595151 D identified by match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368; Mg-chelatase subunits D/I family protein, ComM subfamily protein 2593697..2595151 Mycobacterium smegmatis str. MC2 155 4537466 YP_886849.1 CDS MSMEG_2511 NC_008596.1 2596370 2597242 D identified by match to protein family HMM PF04954; match to protein family HMM PF08021; siderophore utilization protein 2596370..2597242 Mycobacterium smegmatis str. MC2 155 4531485 YP_886850.1 CDS MSMEG_2512 NC_008596.1 2597267 2598430 D identified by match to protein family HMM PF01070; lactate 2-monooxygenase 2597267..2598430 Mycobacterium smegmatis str. MC2 155 4534330 YP_886851.1 CDS MSMEG_2513 NC_008596.1 2598528 2599364 D hypothetical protein 2598528..2599364 Mycobacterium smegmatis str. MC2 155 4535926 YP_886852.1 CDS xerC NC_008596.1 2601428 2602330 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 2601428..2602330 Mycobacterium smegmatis str. MC2 155 4533317 YP_886853.1 CDS MSMEG_2517 NC_008596.1 2602327 2603208 D identified by match to protein family HMM PF00561; alpha/beta hydrolase 2602327..2603208 Mycobacterium smegmatis str. MC2 155 4533558 YP_886854.1 CDS MSMEG_2516 NC_008596.1 2603192 2604121 R identified by match to protein family HMM PF00296; oxidoreductase complement(2603192..2604121) Mycobacterium smegmatis str. MC2 155 4531882 YP_886855.1 CDS MSMEG_2518 NC_008596.1 2604148 2604666 R identified by match to protein family HMM PF01551; peptidase M23B complement(2604148..2604666) Mycobacterium smegmatis str. MC2 155 4532163 YP_886856.1 CDS rpsB NC_008596.1 2604918 2605793 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 2604918..2605793 Mycobacterium smegmatis str. MC2 155 4535569 YP_886857.1 CDS tsf NC_008596.1 2605809 2606636 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 2605809..2606636 Mycobacterium smegmatis str. MC2 155 4534407 YP_886858.1 CDS MSMEG_2521 NC_008596.1 2606795 2608255 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 2606795..2608255 Mycobacterium smegmatis str. MC2 155 4531345 YP_886859.1 CDS MSMEG_2522 NC_008596.1 2608371 2609555 D identified by match to protein family HMM PF02687; efflux ABC transporter permease 2608371..2609555 Mycobacterium smegmatis str. MC2 155 4534516 YP_886860.1 CDS MSMEG_2523 NC_008596.1 2609552 2610118 D identified by match to protein family HMM PF02687; efflux ABC transporter permease 2609552..2610118 Mycobacterium smegmatis str. MC2 155 4532075 YP_886861.1 CDS MSMEG_2524 NC_008596.1 2610123 2610845 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2610123..2610845 Mycobacterium smegmatis str. MC2 155 4536384 YP_886862.1 CDS MSMEG_2525 NC_008596.1 2610917 2612377 D identified by match to protein family HMM PF00324; amino acid permease 2610917..2612377 Mycobacterium smegmatis str. MC2 155 4537288 YP_886863.1 CDS tynA NC_008596.1 2612646 2614619 D catalyzes the formation of phenylacetaldehyde from 2-phenylethylamine; tyramine oxidase 2612646..2614619 Mycobacterium smegmatis str. MC2 155 4535279 YP_886864.1 CDS MSMEG_2527 NC_008596.1 2614912 2615016 D hypothetical protein 2614912..2615016 Mycobacterium smegmatis str. MC2 155 4535481 YP_886865.1 CDS MSMEG_2528 NC_008596.1 2615039 2616163 R identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase complement(2615039..2616163) Mycobacterium smegmatis str. MC2 155 4533276 YP_886866.1 CDS MSMEG_2529 NC_008596.1 2616171 2617124 R identified by match to protein family HMM PF00389; match to protein family HMM PF02826; glyoxylate reductase complement(2616171..2617124) Mycobacterium smegmatis str. MC2 155 4535371 YP_886867.1 CDS pcaC NC_008596.1 2617182 2617610 R identified by match to protein family HMM PF02627; hypothetical protein complement(2617182..2617610) Mycobacterium smegmatis str. MC2 155 4531214 YP_886868.1 CDS MSMEG_2531 NC_008596.1 2617653 2618345 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator complement(2617653..2618345) Mycobacterium smegmatis str. MC2 155 4532312 YP_886869.1 CDS aroQ NC_008596.1 2618774 2619349 D identified by match to protein family HMM PF01220; dehydroquinase dehydratase, type II 2618774..2619349 Mycobacterium smegmatis str. MC2 155 4531029 YP_886870.1 CDS MSMEG_2533 NC_008596.1 2619436 2619741 D hypothetical protein 2619436..2619741 Mycobacterium smegmatis str. MC2 155 4531876 YP_886871.1 CDS MSMEG_2534 NC_008596.1 2619738 2620601 D identified by match to protein family HMM PF00561; carboxylesterase 2619738..2620601 Mycobacterium smegmatis str. MC2 155 4530854 YP_886872.1 CDS MSMEG_2535 NC_008596.1 2620637 2621404 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; dehydrogenase/reductase SDR family protein member 10 2620637..2621404 Mycobacterium smegmatis str. MC2 155 4533958 YP_886873.1 CDS MSMEG_2536 NC_008596.1 2621453 2622208 D identified by match to protein family HMM PF00106; 3-oxoacyl-ACP reductase 2621453..2622208 Mycobacterium smegmatis str. MC2 155 4534817 YP_886874.1 CDS MSMEG_2537 NC_008596.1 2622262 2623653 D identified by match to protein family HMM PF07690; transporter protein 2622262..2623653 Mycobacterium smegmatis str. MC2 155 4532430 YP_886875.1 CDS MSMEG_2538 NC_008596.1 2623666 2624094 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(2623666..2624094) Mycobacterium smegmatis str. MC2 155 4531263 YP_886876.1 CDS MSMEG_2539 NC_008596.1 2624131 2624811 D identified by match to protein family HMM PF05724; thiopurine S-methyltransferase (tpmt) superfamily protein 2624131..2624811 Mycobacterium smegmatis str. MC2 155 4532986 YP_886877.1 CDS pyrH NC_008596.1 2624947 2625693 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 2624947..2625693 Mycobacterium smegmatis str. MC2 155 4535313 YP_886878.1 CDS frr NC_008596.1 2625741 2626298 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 2625741..2626298 Mycobacterium smegmatis str. MC2 155 4537279 YP_886879.1 CDS cdsA NC_008596.1 2626299 2627177 D identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 2626299..2627177 Mycobacterium smegmatis str. MC2 155 4533939 YP_886880.1 CDS MSMEG_2542 NC_008596.1 2627136 2628050 R identified by match to protein family HMM PF00892; hypothetical protein complement(2627136..2628050) Mycobacterium smegmatis str. MC2 155 4533637 YP_886881.1 CDS MSMEG_2544 NC_008596.1 2628197 2629090 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 2628197..2629090 Mycobacterium smegmatis str. MC2 155 4531833 YP_886882.1 CDS MSMEG_2545 NC_008596.1 2629087 2630205 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 2629087..2630205 Mycobacterium smegmatis str. MC2 155 4537482 YP_886883.1 CDS MSMEG_2546 NC_008596.1 2630288 2630989 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator complement(2630288..2630989) Mycobacterium smegmatis str. MC2 155 4532419 YP_886884.1 CDS MSMEG_2547 NC_008596.1 2631062 2632063 R identified by match to protein family HMM PF04198; transcriptional regulator complement(2631062..2632063) Mycobacterium smegmatis str. MC2 155 4535501 YP_886885.1 CDS MSMEG_2548 NC_008596.1 2632377 2633153 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; 3-oxoacyl-ACP reductase 2632377..2633153 Mycobacterium smegmatis str. MC2 155 4531604 YP_886886.1 CDS MSMEG_2549 NC_008596.1 2633198 2634526 D identified by match to protein family HMM PF07690; major facilitator superfamily protein 2633198..2634526 Mycobacterium smegmatis str. MC2 155 4534920 YP_886887.1 CDS MSMEG_2550 NC_008596.1 2634530 2635594 D identified by match to protein family HMM PF00389; match to protein family HMM PF02826; glyoxylate reductase 2634530..2635594 Mycobacterium smegmatis str. MC2 155 4533042 YP_886888.1 CDS MSMEG_2551 NC_008596.1 2635629 2635754 R hypothetical protein complement(2635629..2635754) Mycobacterium smegmatis str. MC2 155 4536274 YP_886889.1 CDS MSMEG_2552 NC_008596.1 2635751 2637235 R identified by match to protein family HMM PF00171; aldehyde dehydrogenase complement(2635751..2637235) Mycobacterium smegmatis str. MC2 155 4535870 YP_886890.1 CDS MSMEG_2553 NC_008596.1 2637301 2637849 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(2637301..2637849) Mycobacterium smegmatis str. MC2 155 4531709 YP_886891.1 CDS MSMEG_2554 NC_008596.1 2637892 2639031 R identified by match to protein family HMM PF01636; phosphotransferase enzyme family protein complement(2637892..2639031) Mycobacterium smegmatis str. MC2 155 4536648 YP_886892.1 CDS MSMEG_2555 NC_008596.1 2639368 2639781 R hypothetical protein complement(2639368..2639781) Mycobacterium smegmatis str. MC2 155 4534400 YP_886893.1 CDS MSMEG_2556 NC_008596.1 2639792 2642041 R identified by match to protein family HMM PF00933; match to protein family HMM PF01915; beta-glucosidase complement(2639792..2642041) Mycobacterium smegmatis str. MC2 155 4530992 YP_886894.1 CDS MSMEG_2557 NC_008596.1 2642079 2642627 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(2642079..2642627) Mycobacterium smegmatis str. MC2 155 4531339 YP_886895.1 CDS MSMEG_2558 NC_008596.1 2642713 2643969 D identified by match to protein family HMM PF00067; NikQ protein 2642713..2643969 Mycobacterium smegmatis str. MC2 155 4532826 YP_886896.1 CDS MSMEG_2559 NC_008596.1 2643983 2644174 D hypothetical protein 2643983..2644174 Mycobacterium smegmatis str. MC2 155 4531222 YP_886897.1 CDS MSMEG_2560 NC_008596.1 2644175 2644993 R hypothetical protein complement(2644175..2644993) Mycobacterium smegmatis str. MC2 155 4531945 YP_886898.1 CDS MSMEG_2561 NC_008596.1 2645003 2645887 R identified by match to protein family HMM PF03758; gluconolactonase complement(2645003..2645887) Mycobacterium smegmatis str. MC2 155 4537376 YP_886899.1 CDS MSMEG_2562 NC_008596.1 2645963 2646667 D hypothetical protein 2645963..2646667 Mycobacterium smegmatis str. MC2 155 4534710 YP_886900.1 CDS MSMEG_2563 NC_008596.1 2646676 2647914 D identified by match to protein family HMM PF00067; cytochrome P450 2646676..2647914 Mycobacterium smegmatis str. MC2 155 4532246 YP_886901.1 CDS MSMEG_2564 NC_008596.1 2647916 2648884 D identified by match to protein family HMM PF00107; oxidoreductase, zinc-binding dehydrogenase 2647916..2648884 Mycobacterium smegmatis str. MC2 155 4537490 YP_886902.1 CDS MSMEG_2565 NC_008596.1 2648881 2649663 D identified by match to protein family HMM PF03328; 4-hydroxy-2-oxovalerate aldolase 2648881..2649663 Mycobacterium smegmatis str. MC2 155 4534734 YP_886903.1 CDS MSMEG_2566 NC_008596.1 2649687 2650415 D identified by match to protein family HMM PF00106; 3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 2649687..2650415 Mycobacterium smegmatis str. MC2 155 4533965 YP_886904.1 CDS MSMEG_2567 NC_008596.1 2650397 2651911 D monooxygenase 2650397..2651911 Mycobacterium smegmatis str. MC2 155 4537588 YP_886905.1 CDS MSMEG_2568 NC_008596.1 2651913 2652845 D identified by match to protein family HMM PF07859; LipW protein 2651913..2652845 Mycobacterium smegmatis str. MC2 155 4531608 YP_886906.1 CDS MSMEG_2569 NC_008596.1 2652955 2653929 R identified by match to protein family HMM PF03171; oxidoreductase, 2OG-Fe(II) oxygenase complement(2652955..2653929) Mycobacterium smegmatis str. MC2 155 4534740 YP_886907.1 CDS MSMEG_2570 NC_008596.1 2653937 2655358 R identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM TIGR00801; xanthine/uracil permease complement(2653937..2655358) Mycobacterium smegmatis str. MC2 155 4537338 YP_886908.1 CDS MSMEG_2571 NC_008596.1 2655727 2656023 D cupin 2655727..2656023 Mycobacterium smegmatis str. MC2 155 4536900 YP_886909.1 CDS MSMEG_2572 NC_008596.1 2656031 2656504 R hypothetical protein complement(2656031..2656504) Mycobacterium smegmatis str. MC2 155 4531237 YP_886910.1 CDS MSMEG_2573 NC_008596.1 2656525 2657232 R identified by match to protein family HMM PF04248; hypothetical protein complement(2656525..2657232) Mycobacterium smegmatis str. MC2 155 4537326 YP_886911.1 CDS MSMEG_2574 NC_008596.1 2657470 2658036 D hypothetical protein 2657470..2658036 Mycobacterium smegmatis str. MC2 155 4532734 YP_886912.1 CDS MSMEG_2575 NC_008596.1 2658074 2658328 R hypothetical protein complement(2658074..2658328) Mycobacterium smegmatis str. MC2 155 4532660 YP_886913.1 CDS MSMEG_2576 NC_008596.1 2658411 2659769 R identified by match to protein family HMM PF00875; match to protein family HMM PF03441; deoxyribodipyrimidine photo-lyase complement(2658411..2659769) Mycobacterium smegmatis str. MC2 155 4534353 YP_886914.1 CDS MSMEG_2577 NC_008596.1 2659722 2659961 D hypothetical protein 2659722..2659961 Mycobacterium smegmatis str. MC2 155 4536460 YP_886915.1 CDS dxr NC_008596.1 2660026 2661222 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2660026..2661222 Mycobacterium smegmatis str. MC2 155 4536334 YP_886916.1 CDS MSMEG_2579 NC_008596.1 2661219 2662439 D identified by match to protein family HMM PF02163; zinc metalloprotease 2661219..2662439 Mycobacterium smegmatis str. MC2 155 4534732 YP_886917.1 CDS ispG NC_008596.1 2662456 2663622 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2662456..2663622 Mycobacterium smegmatis str. MC2 155 4537421 YP_886918.1 CDS MSMEG_2581 NC_008596.1 2663721 2664533 D identified by match to protein family HMM PF00583; acetyltransferase 2663721..2664533 Mycobacterium smegmatis str. MC2 155 4536982 YP_886919.1 CDS MSMEG_2582 NC_008596.1 2664545 2665084 R hypothetical protein complement(2664545..2665084) Mycobacterium smegmatis str. MC2 155 4537232 YP_886920.1 CDS MSMEG_2583 NC_008596.1 2665175 2665783 D identified by match to protein family HMM PF00440; match to protein family HMM PF02909; transcriptional regulator 2665175..2665783 Mycobacterium smegmatis str. MC2 155 4534339 YP_886921.1 CDS MSMEG_2584 NC_008596.1 2665920 2667740 D identified by match to protein family HMM PF00905; match to protein family HMM PF05223; penicillin-binding protein 2665920..2667740 Mycobacterium smegmatis str. MC2 155 4531118 YP_886922.1 CDS MSMEG_2585 NC_008596.1 2667790 2668377 D identified by match to protein family HMM PF08044; hypothetical protein 2667790..2668377 Mycobacterium smegmatis str. MC2 155 4536663 YP_886923.1 CDS MSMEG_2586 NC_008596.1 2668397 2668783 R identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; hypothetical protein complement(2668397..2668783) Mycobacterium smegmatis str. MC2 155 4531500 YP_886924.1 CDS map NC_008596.1 2668898 2669755 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mnin Bacillus subtilis the protein in this cluster is considered non-essential; methionine aminopeptidase 2668898..2669755 Mycobacterium smegmatis str. MC2 155 4537649 YP_886925.1 CDS cobQ NC_008596.1 2669752 2671242 D catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 2669752..2671242 Mycobacterium smegmatis str. MC2 155 4535016 YP_886926.1 CDS MSMEG_2589 NC_008596.1 2671246 2671656 R hypothetical protein complement(2671246..2671656) Mycobacterium smegmatis str. MC2 155 4532881 YP_886927.1 CDS MSMEG_2590 NC_008596.1 2671766 2672536 D identified by match to protein family HMM PF00165; match to protein family HMM PF02311; AraC family transcriptional regulator 2671766..2672536 Mycobacterium smegmatis str. MC2 155 4533416 YP_886928.1 CDS MSMEG_2591 NC_008596.1 2672585 2673241 D hypothetical protein 2672585..2673241 Mycobacterium smegmatis str. MC2 155 4533458 YP_886929.1 CDS MSMEG_2592 NC_008596.1 2673315 2673878 D hypothetical protein 2673315..2673878 Mycobacterium smegmatis str. MC2 155 4536631 YP_886930.1 CDS MSMEG_2593 NC_008596.1 2673880 2675709 R identified by match to protein family HMM PF00583; match to protein family HMM TIGR03103; GNAT family acetyltransferase complement(2673880..2675709) Mycobacterium smegmatis str. MC2 155 4536361 YP_886931.1 CDS asnB NC_008596.1 2675706 2677511 R identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; match to protein family HMM TIGR03104; asparagine synthase complement(2675706..2677511) Mycobacterium smegmatis str. MC2 155 4537489 YP_886932.1 CDS MSMEG_2595 NC_008596.1 2677864 2679237 D identified by match to protein family HMM PF00120; gamma-glutamylisopropylamide synthetase 2677864..2679237 Mycobacterium smegmatis str. MC2 155 4532918 YP_886933.1 CDS MSMEG_2596 NC_008596.1 2679224 2679973 D identified by match to protein family HMM PF00117; match to protein family HMM PF07722; peptidase C26 2679224..2679973 Mycobacterium smegmatis str. MC2 155 4532925 YP_886934.1 CDS MSMEG_2597 NC_008596.1 2679970 2681325 D identified by match to protein family HMM PF00171; aldehyde dehydrogenase 2679970..2681325 Mycobacterium smegmatis str. MC2 155 4534575 YP_886935.1 CDS MSMEG_2598 NC_008596.1 2681364 2682137 D identified by match to protein family HMM PF00106; short chain dehydrogenase 2681364..2682137 Mycobacterium smegmatis str. MC2 155 4537272 YP_886936.1 CDS MSMEG_2599 NC_008596.1 2682163 2682897 D identified by match to protein family HMM PF00392; match to protein family HMM PF02082; match to protein family HMM PF07729; GntR family transcriptional regulator 2682163..2682897 Mycobacterium smegmatis str. MC2 155 4537208 YP_886937.1 CDS MSMEG_2600 NC_008596.1 2682903 2683643 R identified by match to protein family HMM PF01614; regulatory protein complement(2682903..2683643) Mycobacterium smegmatis str. MC2 155 4532617 YP_886938.1 CDS pcaH NC_008596.1 2683715 2684461 D identified by match to protein family HMM PF00775; match to protein family HMM TIGR02422; protocatechuate 3,4-dioxygenase subunit beta 2683715..2684461 Mycobacterium smegmatis str. MC2 155 4536269 YP_886939.1 CDS pcaG NC_008596.1 2684461 2685018 D identified by match to protein family HMM PF00775; match to protein family HMM TIGR02423; protocatechuate 3,4-dioxygenase subunit alpha 2684461..2685018 Mycobacterium smegmatis str. MC2 155 4534641 YP_886940.1 CDS pcaB NC_008596.1 2685015 2686217 D identified by match to protein family HMM PF00206; match to protein family HMM TIGR02426; 3-carboxy-cis,cis-muconate cycloisomerase 2685015..2686217 Mycobacterium smegmatis str. MC2 155 4534825 YP_886941.1 CDS pcaC NC_008596.1 2686214 2686618 D identified by match to protein family HMM PF02627; match to protein family HMM TIGR02425; 4-carboxymuconolactone decarboxylase 2686214..2686618 Mycobacterium smegmatis str. MC2 155 4531307 YP_886942.1 CDS MSMEG_2605 NC_008596.1 2686690 2687430 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator complement(2686690..2687430) Mycobacterium smegmatis str. MC2 155 4533261 YP_886943.1 CDS MSMEG_2606 NC_008596.1 2687544 2687846 D identified by match to protein family HMM PF01022; match to protein family HMM PF07848; ArsR family transcriptional regulator 2687544..2687846 Mycobacterium smegmatis str. MC2 155 4533956 YP_886944.1 CDS cbiM NC_008596.1 2687927 2688613 D identified by match to protein family HMM PF01891; cobalamin biosynthesis protein CbiM 2687927..2688613 Mycobacterium smegmatis str. MC2 155 4537278 YP_886945.1 CDS MSMEG_2608 NC_008596.1 2688610 2688948 D cobalt transporter CbiM 2688610..2688948 Mycobacterium smegmatis str. MC2 155 4533108 YP_886946.1 CDS cbiQ NC_008596.1 2688950 2689729 D identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454; cobalt ABC transporter permease 2688950..2689729 Mycobacterium smegmatis str. MC2 155 4532141 YP_886947.1 CDS MSMEG_2610 NC_008596.1 2689726 2690475 D identified by match to protein family HMM PF00005; cobalt transporter ATP-binding subunit 2689726..2690475 Mycobacterium smegmatis str. MC2 155 4534227 YP_886948.1 CDS MSMEG_2611 NC_008596.1 2690486 2691871 R catalyzes the reduction of mycothione or glutathione to mycothione or glutathione disulfide; mycothione reductase complement(2690486..2691871) Mycobacterium smegmatis str. MC2 155 4534030 YP_886949.1 CDS MSMEG_2612 NC_008596.1 2691876 2692907 R hypothetical protein complement(2691876..2692907) Mycobacterium smegmatis str. MC2 155 4531630 YP_886950.1 CDS mqo NC_008596.1 2693158 2694690 D malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 2693158..2694690 Mycobacterium smegmatis str. MC2 155 4534593 YP_886951.1 CDS MSMEG_2614 NC_008596.1 2694704 2695177 D identified by match to protein family HMM PF00583; ElaA protein 2694704..2695177 Mycobacterium smegmatis str. MC2 155 4533777 YP_886952.1 CDS MSMEG_2615 NC_008596.1 2695174 2697057 D identified by match to protein family HMM PF00092; match to protein family HMM PF01078; match to protein family HMM PF07728; chelatase 2695174..2697057 Mycobacterium smegmatis str. MC2 155 4532968 YP_886953.1 CDS cobO NC_008596.1 2697091 2697684 D catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 2697091..2697684 Mycobacterium smegmatis str. MC2 155 4530855 YP_886954.1 CDS cobB NC_008596.1 2697720 2699096 D responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 2697720..2699096 Mycobacterium smegmatis str. MC2 155 4534788 YP_886955.1 CDS cobA NC_008596.1 2699162 2700370 D identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; match to protein family HMM TIGR01470; uroporphyrin-III C-methyltransferase 2699162..2700370 Mycobacterium smegmatis str. MC2 155 4537053 YP_886956.1 CDS MSMEG_2619 NC_008596.1 2700404 2701951 D identified by match to protein family HMM PF07690; efflux protein 2700404..2701951 Mycobacterium smegmatis str. MC2 155 4536362 YP_886957.1 CDS MSMEG_2620 NC_008596.1 2701968 2702672 D hypothetical protein 2701968..2702672 Mycobacterium smegmatis str. MC2 155 4535884 YP_886958.1 CDS proS NC_008596.1 2702707 2704464 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 2702707..2704464 Mycobacterium smegmatis str. MC2 155 4534796 YP_886959.1 CDS MSMEG_2622 NC_008596.1 2704485 2704958 R hypothetical protein complement(2704485..2704958) Mycobacterium smegmatis str. MC2 155 4534049 YP_886960.1 CDS MSMEG_2623 NC_008596.1 2704955 2705503 R identified by match to protein family HMM TIGR01409; Tat pathway signal sequence domain-containing protein complement(2704955..2705503) Mycobacterium smegmatis str. MC2 155 4535258 YP_886961.1 CDS MSMEG_2624 NC_008596.1 2705700 2706245 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 2705700..2706245 Mycobacterium smegmatis str. MC2 155 4533874 YP_886962.1 CDS nusA NC_008596.1 2706242 2707273 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 2706242..2707273 Mycobacterium smegmatis str. MC2 155 4536800 YP_886963.1 CDS MSMEG_2626 NC_008596.1 2707322 2707672 D identified by match to protein family HMM PF04296; hypothetical protein 2707322..2707672 Mycobacterium smegmatis str. MC2 155 4532229 YP_886964.1 CDS MSMEG_2627 NC_008596.1 2707937 2708785 R hypothetical protein complement(2707937..2708785) Mycobacterium smegmatis str. MC2 155 4532344 YP_886965.1 CDS infB NC_008596.1 2708747 2710579 D identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF04760; match to protein family HMM TIGR00231; match to protein family HMM TIGR00487; translation initiation factor IF-2 2708747..2710579 Mycobacterium smegmatis str. MC2 155 4535331 YP_886966.1 CDS rbfA NC_008596.1 2710579 2711049 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 2710579..2711049 Mycobacterium smegmatis str. MC2 155 4531616 YP_886967.1 CDS MSMEG_2630 NC_008596.1 2711052 2712074 D identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH family protein 2711052..2712074 Mycobacterium smegmatis str. MC2 155 4531619 YP_886968.1 CDS MSMEG_2631 NC_008596.1 2712067 2713434 D identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 2712067..2713434 Mycobacterium smegmatis str. MC2 155 4535923 YP_886969.1 CDS MSMEG_2632 NC_008596.1 2713440 2714060 R identified by match to protein family HMM PF01209; SAM-dependent methyltransferase complement(2713440..2714060) Mycobacterium smegmatis str. MC2 155 4535639 YP_886970.1 CDS MSMEG_2633 NC_008596.1 2714104 2714925 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2714104..2714925) Mycobacterium smegmatis str. MC2 155 4532374 YP_886971.1 CDS MSMEG_2634 NC_008596.1 2714946 2715989 R hypothetical protein complement(2714946..2715989) Mycobacterium smegmatis str. MC2 155 4532977 YP_886972.1 CDS MSMEG_2635 NC_008596.1 2716010 2716903 R identified by match to protein family HMM PF00528; ABC transporter permease complement(2716010..2716903) Mycobacterium smegmatis str. MC2 155 4532205 YP_886973.1 CDS MSMEG_2636 NC_008596.1 2717025 2718056 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; LacI family transcriptional regulator complement(2717025..2718056) Mycobacterium smegmatis str. MC2 155 4530943 YP_886974.1 CDS MSMEG_2637 NC_008596.1 2718150 2719415 D identified by match to protein family HMM PF01408; match to protein family HMM PF02894; oxidoreductase, Gfo/Idh/MocA family protein 2718150..2719415 Mycobacterium smegmatis str. MC2 155 4533429 YP_886975.1 CDS MSMEG_2638 NC_008596.1 2719412 2720602 D identified by match to protein family HMM PF06187; hypothetical protein 2719412..2720602 Mycobacterium smegmatis str. MC2 155 4533799 YP_886976.1 CDS MSMEG_2640 NC_008596.1 2720599 2721432 D identified by match to protein family HMM PF01261; 3-dehydroshikimate dehydratase 2720599..2721432 Mycobacterium smegmatis str. MC2 155 4534505 YP_886977.1 CDS MSMEG_2639 NC_008596.1 2721419 2722243 R identified by match to protein family HMM PF00892; integral membrane protein complement(2721419..2722243) Mycobacterium smegmatis str. MC2 155 4532905 YP_886978.1 CDS MSMEG_2641 NC_008596.1 2722400 2723158 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(2722400..2723158) Mycobacterium smegmatis str. MC2 155 4536855 YP_886979.1 CDS MSMEG_2642 NC_008596.1 2723196 2723471 D hypothetical protein 2723196..2723471 Mycobacterium smegmatis str. MC2 155 4531998 YP_886980.1 CDS MSMEG_2643 NC_008596.1 2723468 2724031 D hypothetical protein 2723468..2724031 Mycobacterium smegmatis str. MC2 155 4535011 YP_886981.1 CDS MSMEG_2644 NC_008596.1 2724054 2725727 R identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976; hydrolase complement(2724054..2725727) Mycobacterium smegmatis str. MC2 155 4535161 YP_886982.1 CDS MSMEG_2645 NC_008596.1 2725764 2726348 R hypothetical protein complement(2725764..2726348) Mycobacterium smegmatis str. MC2 155 4533539 YP_886983.1 CDS MSMEG_2646 NC_008596.1 2726511 2727722 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; mini-circle transposase for complement(2726511..2727722) Mycobacterium smegmatis str. MC2 155 4535191 YP_886984.1 CDS MSMEG_2647 NC_008596.1 2727996 2728961 D identified by match to protein family HMM PF00149; metallophosphoesterase 2727996..2728961 Mycobacterium smegmatis str. MC2 155 4532857 YP_886985.1 CDS MSMEG_2648 NC_008596.1 2728958 2729623 D identified by match to protein family HMM PF01648; Sfp-type phosphopantetheinyl transferase 2728958..2729623 Mycobacterium smegmatis str. MC2 155 4532187 YP_886986.1 CDS truB NC_008596.1 2729620 2730531 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 2729620..2730531 Mycobacterium smegmatis str. MC2 155 4536701 YP_886987.1 CDS MSMEG_2650 NC_008596.1 2730551 2731765 R identified by match to protein family HMM PF00441; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(2730551..2731765) Mycobacterium smegmatis str. MC2 155 4533627 YP_886988.1 CDS MSMEG_2651 NC_008596.1 2731781 2732938 R identified by similarity to SP:P40402; alkanesulfonate monooxygenase complement(2731781..2732938) Mycobacterium smegmatis str. MC2 155 4536506 YP_886989.1 CDS MSMEG_2652 NC_008596.1 2733015 2733725 R identified by match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023; iron repressor protein complement(2733015..2733725) Mycobacterium smegmatis str. MC2 155 4537353 YP_886990.1 CDS ribF NC_008596.1 2733807 2734784 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 2733807..2734784 Mycobacterium smegmatis str. MC2 155 4531407 YP_886991.1 CDS rpsO NC_008596.1 2734886 2735155 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 2734886..2735155 Mycobacterium smegmatis str. MC2 155 4534444 YP_886992.1 CDS MSMEG_2655 NC_008596.1 2735260 2735667 D LppU protein 2735260..2735667 Mycobacterium smegmatis str. MC2 155 4533255 YP_886993.1 CDS gpsI NC_008596.1 2735997 2738288 D identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; match to protein family HMM TIGR02696; polynucleotide phosphorylase 2735997..2738288 Mycobacterium smegmatis str. MC2 155 4532155 YP_886994.1 CDS MSMEG_2657 NC_008596.1 2738311 2739615 D identified by match to protein family HMM PF00675; match to protein family HMM PF05193; peptidase, M16 family protein 2738311..2739615 Mycobacterium smegmatis str. MC2 155 4532948 YP_886995.1 CDS MSMEG_2658 NC_008596.1 2739634 2740515 D identified by match to protein family HMM PF00144; match to protein family HMM TIGR01409; beta-lactamase 2739634..2740515 Mycobacterium smegmatis str. MC2 155 4530997 YP_886996.1 CDS ald NC_008596.1 2740567 2741682 R identified by match to protein family HMM PF01262; match to protein family HMM PF02826; match to protein family HMM PF05222; match to protein family HMM TIGR00518; alanine dehydrogenase complement(2740567..2741682) Mycobacterium smegmatis str. MC2 155 4534068 YP_886997.1 CDS MSMEG_2660 NC_008596.1 2741778 2742293 D identified by match to protein family HMM PF01037; AsnC family transcriptional regulator 2741778..2742293 Mycobacterium smegmatis str. MC2 155 4535476 YP_886998.1 CDS MSMEG_2661 NC_008596.1 2742304 2743065 R identified by match to protein family HMM PF03724; hypothetical protein complement(2742304..2743065) Mycobacterium smegmatis str. MC2 155 4535226 YP_886999.1 CDS MSMEG_2662 NC_008596.1 2743220 2743516 D hypothetical protein 2743220..2743516 Mycobacterium smegmatis str. MC2 155 4533584 YP_887000.1 CDS MSMEG_2663 NC_008596.1 2743713 2745449 R identified by match to protein family HMM PF02720; hypothetical protein complement(2743713..2745449) Mycobacterium smegmatis str. MC2 155 4536754 YP_887001.1 CDS dapB NC_008596.1 2745690 2746427 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 2745690..2746427 Mycobacterium smegmatis str. MC2 155 4535928 YP_887002.1 CDS MSMEG_2665 NC_008596.1 2746424 2746891 D hypothetical protein 2746424..2746891 Mycobacterium smegmatis str. MC2 155 4531839 YP_887003.1 CDS MSMEG_2666 NC_008596.1 2746888 2747343 D multimeric flavodoxin WrbA 2746888..2747343 Mycobacterium smegmatis str. MC2 155 4532268 YP_887004.1 CDS MSMEG_2668 NC_008596.1 2747354 2747815 D hypothetical protein 2747354..2747815 Mycobacterium smegmatis str. MC2 155 4537334 YP_887005.1 CDS MSMEG_2667 NC_008596.1 2747809 2748729 R identified by match to protein family HMM PF03328; HpcH/HpaI aldolase/citrate lyase complement(2747809..2748729) Mycobacterium smegmatis str. MC2 155 4536044 YP_887006.1 CDS MSMEG_2669 NC_008596.1 2748751 2749500 R identified by match to protein family HMM PF01738; hydrolase complement(2748751..2749500) Mycobacterium smegmatis str. MC2 155 4531388 YP_887007.1 CDS thyA NC_008596.1 2749543 2750343 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 2749543..2750343 Mycobacterium smegmatis str. MC2 155 4533426 YP_887008.1 CDS folA NC_008596.1 2750372 2750836 D identified by match to protein family HMM PF00186; dihydrofolate reductase 2750372..2750836 Mycobacterium smegmatis str. MC2 155 4533432 YP_887009.1 CDS MSMEG_2672 NC_008596.1 2750910 2751554 D acyl-CoA synthetase 2750910..2751554 Mycobacterium smegmatis str. MC2 155 4535325 YP_887010.1 CDS MSMEG_2675 NC_008596.1 2751938 2753338 D identified by similarity to SP:P37248; match to protein family HMM PF00665; ISMsm8, transposase 2751938..2753338 Mycobacterium smegmatis str. MC2 155 4533461 YP_887011.1 CDS MSMEG_2676 NC_008596.1 2753996 2754322 R similar at the nucleotide level to IS1137 in the IS Finder database.; identified by match to protein family HMM PF01527; IS1137, transposase orfA complement(2753996..2754322) Mycobacterium smegmatis str. MC2 155 4532519 YP_887012.1 CDS MSMEG_2677 NC_008596.1 2754283 2755590 R identified by match to protein family HMM PF03176; large membrane protein complement(2754283..2755590) Mycobacterium smegmatis str. MC2 155 4534498 YP_887013.1 CDS MSMEG_2678 NC_008596.1 2755771 2755920 R hypothetical protein complement(2755771..2755920) Mycobacterium smegmatis str. MC2 155 4534011 YP_887014.1 CDS MSMEG_2679 NC_008596.1 2756022 2757218 D identified by match to protein family HMM PF06224; hypothetical protein 2756022..2757218 Mycobacterium smegmatis str. MC2 155 4534147 YP_887015.1 CDS MSMEG_2680 NC_008596.1 2757263 2758669 R identified by match to protein family HMM PF00324; amino acid transporter complement(2757263..2758669) Mycobacterium smegmatis str. MC2 155 4537149 YP_887016.1 CDS MSMEG_2681 NC_008596.1 2758699 2759628 R identified by match to protein family HMM PF00561; match to protein family HMM TIGR01250; proline imino-peptidase complement(2758699..2759628) Mycobacterium smegmatis str. MC2 155 4534200 YP_887017.1 CDS MSMEG_2682 NC_008596.1 2759690 2760487 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; transcriptional regulator 2759690..2760487 Mycobacterium smegmatis str. MC2 155 4536202 YP_887018.1 CDS thyX NC_008596.1 2760518 2761270 D flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 2760518..2761270 Mycobacterium smegmatis str. MC2 155 4532589 YP_887019.1 CDS dapA NC_008596.1 2761296 2762198 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2761296..2762198 Mycobacterium smegmatis str. MC2 155 4532741 YP_887020.1 CDS MSMEG_2685 NC_008596.1 2762206 2763882 D identified by match to protein family HMM PF00753; match to protein family HMM PF07521; metallo-beta-lactamase superfamily protein 2762206..2763882 Mycobacterium smegmatis str. MC2 155 4533618 YP_887021.1 CDS MSMEG_2686 NC_008596.1 2763894 2764331 R hypothetical protein complement(2763894..2764331) Mycobacterium smegmatis str. MC2 155 4533168 YP_887022.1 CDS MSMEG_2687 NC_008596.1 2764345 2765172 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(2764345..2765172) Mycobacterium smegmatis str. MC2 155 4535351 YP_887023.1 CDS MSMEG_2688 NC_008596.1 2765195 2765509 R identified by match to protein family HMM PF03992; antibiotic biosynthesis monooxygenase domain-containing protein complement(2765195..2765509) Mycobacterium smegmatis str. MC2 155 4531310 YP_887024.1 CDS MSMEG_2690 NC_008596.1 2765524 2768304 D identified by match to protein family HMM PF01580; DNA translocase FtsK 2765524..2768304 Mycobacterium smegmatis str. MC2 155 4533035 YP_887025.1 CDS MSMEG_2689 NC_008596.1 2765743 2765871 R hypothetical protein complement(2765743..2765871) Mycobacterium smegmatis str. MC2 155 4535235 YP_887026.1 CDS MSMEG_2691 NC_008596.1 2768315 2768797 R catalyzes the conversion of l-glutamate to a-N-acetyl-l-glutamate in arginine biosynthesis; N-acetylglutamate synthase complement(2768315..2768797) Mycobacterium smegmatis str. MC2 155 4533217 YP_887027.1 CDS pgsA NC_008596.1 2768903 2769508 D identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2768903..2769508 Mycobacterium smegmatis str. MC2 155 4531819 YP_887028.1 CDS MSMEG_2693 NC_008596.1 2769486 2769974 D identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence-damaged protein 2769486..2769974 Mycobacterium smegmatis str. MC2 155 4533385 YP_887029.1 CDS MSMEG_2694 NC_008596.1 2770097 2770435 D identified by match to protein family HMM PF01381; XRE family transcriptional regulator 2770097..2770435 Mycobacterium smegmatis str. MC2 155 4536039 YP_887030.1 CDS MSMEG_2695 NC_008596.1 2770675 2771514 D identified by match to protein family HMM PF04012; hypothetical protein 2770675..2771514 Mycobacterium smegmatis str. MC2 155 4537457 YP_887031.1 CDS MSMEG_2696 NC_008596.1 2771533 2772369 D membrane alanine rich protein 2771533..2772369 Mycobacterium smegmatis str. MC2 155 4534855 YP_887032.1 CDS MSMEG_2697 NC_008596.1 2772377 2772784 R hypothetical protein complement(2772377..2772784) Mycobacterium smegmatis str. MC2 155 4533796 YP_887033.1 CDS MSMEG_2698 NC_008596.1 2772781 2773191 R identified by match to protein family HMM PF07366; match to protein family HMM PF07858; hypothetical protein complement(2772781..2773191) Mycobacterium smegmatis str. MC2 155 4537570 YP_887034.1 CDS MSMEG_2699 NC_008596.1 2773253 2774425 D hypothetical protein 2773253..2774425 Mycobacterium smegmatis str. MC2 155 4534249 YP_887035.1 CDS MSMEG_2700 NC_008596.1 2774435 2774629 D hypothetical protein 2774435..2774629 Mycobacterium smegmatis str. MC2 155 4535927 YP_887036.1 CDS MSMEG_2701 NC_008596.1 2774673 2774876 D hypothetical protein 2774673..2774876 Mycobacterium smegmatis str. MC2 155 4537615 YP_887037.1 CDS hypD NC_008596.1 2774889 2776013 R identified by match to protein family HMM PF01924; match to protein family HMM TIGR00075; hydrogenase expression/formation protein HypD complement(2774889..2776013) Mycobacterium smegmatis str. MC2 155 4530898 YP_887038.1 CDS hypC NC_008596.1 2776054 2776338 R identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase assembly chaperone HypC/HupF complement(2776054..2776338) Mycobacterium smegmatis str. MC2 155 4534818 YP_887039.1 CDS hypE NC_008596.1 2777828 2778901 R identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124; hydrogenase expression/formation protein HypE complement(2777828..2778901) Mycobacterium smegmatis str. MC2 155 4537420 YP_887040.1 CDS gmhA NC_008596.1 2778898 2779581 R phosphoheptose isomerase complement(2778898..2779581) Mycobacterium smegmatis str. MC2 155 4535726 YP_887041.1 CDS MSMEG_2707 NC_008596.1 2779578 2780315 R hypothetical protein complement(2779578..2780315) Mycobacterium smegmatis str. MC2 155 4532860 YP_887042.1 CDS MSMEG_2709 NC_008596.1 2780291 2780443 D hypothetical protein 2780291..2780443 Mycobacterium smegmatis str. MC2 155 4537506 YP_887043.1 CDS MSMEG_2708 NC_008596.1 2780312 2780503 R hypothetical protein complement(2780312..2780503) Mycobacterium smegmatis str. MC2 155 4533277 YP_887044.1 CDS MSMEG_2710 NC_008596.1 2780500 2781228 R hypothetical protein complement(2780500..2781228) Mycobacterium smegmatis str. MC2 155 4533621 YP_887045.1 CDS hypF NC_008596.1 2781233 2783524 R identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143; [NiFe] hydrogenase maturation protein HypF complement(2781233..2783524) Mycobacterium smegmatis str. MC2 155 4532245 YP_887046.1 CDS hypC NC_008596.1 2783521 2783781 R identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase assembly chaperone HypC/HupF complement(2783521..2783781) Mycobacterium smegmatis str. MC2 155 4532992 YP_887047.1 CDS MSMEG_2713 NC_008596.1 2783783 2784265 R identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; peptidase M52, hydrogen uptake protein complement(2783783..2784265) Mycobacterium smegmatis str. MC2 155 4537712 YP_887048.1 CDS MSMEG_2714 NC_008596.1 2784269 2784388 R hypothetical protein complement(2784269..2784388) Mycobacterium smegmatis str. MC2 155 4537050 YP_887049.1 CDS MSMEG_2715 NC_008596.1 2784414 2785739 R hypothetical protein complement(2784414..2785739) Mycobacterium smegmatis str. MC2 155 4534113 YP_887050.1 CDS MSMEG_2716 NC_008596.1 2785736 2786392 R hypothetical protein complement(2785736..2786392) Mycobacterium smegmatis str. MC2 155 4536686 YP_887051.1 CDS MSMEG_2717 NC_008596.1 2786389 2786949 R hypothetical protein complement(2786389..2786949) Mycobacterium smegmatis str. MC2 155 4536863 YP_887052.1 CDS MSMEG_2718 NC_008596.1 2787037 2787960 R identified by match to protein family HMM PF01106; (Fe-S)-binding protein complement(2787037..2787960) Mycobacterium smegmatis str. MC2 155 4534071 YP_887053.1 CDS MSMEG_2719 NC_008596.1 2787964 2789760 R identified by match to protein family HMM PF00374; hydrogen:quinone oxidoreductase complement(2787964..2789760) Mycobacterium smegmatis str. MC2 155 4532665 YP_887054.1 CDS MSMEG_2720 NC_008596.1 2789863 2790918 R identified by match to protein family HMM PF01058; NADH ubiquinone oxidoreductase, 20 kDa subunit complement(2789863..2790918) Mycobacterium smegmatis str. MC2 155 4535109 YP_887055.1 CDS hypB NC_008596.1 2791028 2791807 R identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073; hydrogenase nickel incorporation protein HypB complement(2791028..2791807) Mycobacterium smegmatis str. MC2 155 4532541 YP_887056.1 CDS hypA NC_008596.1 2791809 2792138 R identified by match to protein family HMM PF01155; hydrogenase nickel incorporation protein HypA complement(2791809..2792138) Mycobacterium smegmatis str. MC2 155 4534343 YP_887057.1 CDS recA NC_008596.1 2792363 2793412 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 2792363..2793412 Mycobacterium smegmatis str. MC2 155 4532488 YP_887058.1 CDS recX NC_008596.1 2793381 2793947 D binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 2793381..2793947 Mycobacterium smegmatis str. MC2 155 4531437 YP_887059.1 CDS MSMEG_2725 NC_008596.1 2794005 2794904 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamate transporter permease GluD complement(2794005..2794904) Mycobacterium smegmatis str. MC2 155 4535800 YP_887060.1 CDS MSMEG_2726 NC_008596.1 2794901 2795581 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamate permease complement(2794901..2795581) Mycobacterium smegmatis str. MC2 155 4533250 YP_887061.1 CDS MSMEG_2727 NC_008596.1 2795600 2796421 R identified by match to protein family HMM PF00497; glutamate binding protein complement(2795600..2796421) Mycobacterium smegmatis str. MC2 155 4536767 YP_887062.1 CDS MSMEG_2728 NC_008596.1 2796447 2797232 R identified by match to protein family HMM PF00005; glutamate transport ATP-binding protein GluA complement(2796447..2797232) Mycobacterium smegmatis str. MC2 155 4537481 YP_887063.1 CDS miaB NC_008596.1 2797337 2798875 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 2797337..2798875 Mycobacterium smegmatis str. MC2 155 4533482 YP_887064.1 CDS MSMEG_2731 NC_008596.1 2799515 2800879 R identified by match to protein family HMM PF03993; DNA repair ATPase complement(2799515..2800879) Mycobacterium smegmatis str. MC2 155 4534938 YP_887065.1 CDS MSMEG_2732 NC_008596.1 2801006 2801893 D hypothetical protein 2801006..2801893 Mycobacterium smegmatis str. MC2 155 4536613 YP_887066.1 CDS MSMEG_2733 NC_008596.1 2801903 2802589 D hypothetical protein 2801903..2802589 Mycobacterium smegmatis str. MC2 155 4536681 YP_887067.1 CDS miaA NC_008596.1 2802586 2803494 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 2802586..2803494 Mycobacterium smegmatis str. MC2 155 4533335 YP_887068.1 CDS dapF NC_008596.1 2803499 2804374 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 2803499..2804374 Mycobacterium smegmatis str. MC2 155 4533230 YP_887069.1 CDS MSMEG_2736 NC_008596.1 2804420 2805832 D identified by match to protein family HMM PF01926; GTP-binding protein 2804420..2805832 Mycobacterium smegmatis str. MC2 155 4531279 YP_887070.1 CDS MSMEG_2737 NC_008596.1 2805853 2807556 R PPE family protein complement(2805853..2807556) Mycobacterium smegmatis str. MC2 155 4534139 YP_887071.1 CDS MSMEG_2738 NC_008596.1 2807642 2809933 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR00509; biotin sulfoxide reductase complement(2807642..2809933) Mycobacterium smegmatis str. MC2 155 4535115 YP_887072.1 CDS MSMEG_2739 NC_008596.1 2810192 2812627 D hypothetical protein 2810192..2812627 Mycobacterium smegmatis str. MC2 155 4533006 YP_887073.1 CDS lexA NC_008596.1 2812637 2813368 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(2812637..2813368) Mycobacterium smegmatis str. MC2 155 4531324 YP_887074.1 CDS MSMEG_2741 NC_008596.1 2813453 2813581 D hypothetical protein 2813453..2813581 Mycobacterium smegmatis str. MC2 155 4537597 YP_887075.1 CDS MSMEG_2742 NC_008596.1 2813632 2814189 D identified by match to protein family HMM PF01476; DNA-damage-inducible protein 2813632..2814189 Mycobacterium smegmatis str. MC2 155 4535358 YP_887076.1 CDS nrdR NC_008596.1 2814351 2814803 D identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; NrdR family transcriptional regulator 2814351..2814803 Mycobacterium smegmatis str. MC2 155 4532794 YP_887077.1 CDS MSMEG_2744 NC_008596.1 2814822 2815511 R identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654; thymidylate synthase complement(2814822..2815511) Mycobacterium smegmatis str. MC2 155 4537054 YP_887078.1 CDS MSMEG_2746 NC_008596.1 2816586 2817632 R identified by match to protein family HMM PF01908; hypothetical protein complement(2816586..2817632) Mycobacterium smegmatis str. MC2 155 4536529 YP_887079.1 CDS sthA NC_008596.1 2818671 2820086 R catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase complement(2818671..2820086) Mycobacterium smegmatis str. MC2 155 4536029 YP_887080.1 CDS MSMEG_2749 NC_008596.1 2820136 2821314 D hypothetical protein 2820136..2821314 Mycobacterium smegmatis str. MC2 155 4535403 YP_887081.1 CDS MSMEG_2750 NC_008596.1 2821344 2822036 R identified by match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023; iron-dependent repressor IdeR complement(2821344..2822036) Mycobacterium smegmatis str. MC2 155 4535760 YP_887082.1 CDS MSMEG_2751 NC_008596.1 2822116 2822265 R hypothetical protein complement(2822116..2822265) Mycobacterium smegmatis str. MC2 155 4531611 YP_887083.1 CDS MSMEG_2752 NC_008596.1 2822265 2823224 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma factors in this cluster are active during stationary phase; RNA polymerase sigma factor SigB complement(2822265..2823224) Mycobacterium smegmatis str. MC2 155 4531863 YP_887084.1 CDS MSMEG_2753 NC_008596.1 2823372 2823800 R hypothetical protein complement(2823372..2823800) Mycobacterium smegmatis str. MC2 155 4533791 YP_887085.1 CDS MSMEG_2754 NC_008596.1 2823878 2824114 D hypothetical protein 2823878..2824114 Mycobacterium smegmatis str. MC2 155 4535751 YP_887086.1 CDS MSMEG_2755 NC_008596.1 2824118 2825110 R identified by match to protein family HMM PF03631; hypothetical protein complement(2824118..2825110) Mycobacterium smegmatis str. MC2 155 4537526 YP_887087.1 CDS MSMEG_2756 NC_008596.1 2825183 2825374 R hypothetical protein complement(2825183..2825374) Mycobacterium smegmatis str. MC2 155 4535129 YP_887088.1 CDS MSMEG_2757 NC_008596.1 2825532 2825897 D identified by match to protein family HMM PF06108; glutathione S-transferase domain-containing protein 2825532..2825897 Mycobacterium smegmatis str. MC2 155 4536164 YP_887089.1 CDS MSMEG_2759 NC_008596.1 2826103 2826228 D hypothetical protein 2826103..2826228 Mycobacterium smegmatis str. MC2 155 4535383 YP_887090.1 CDS MSMEG_2758 NC_008596.1 2826225 2827625 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase sigma factor complement(2826225..2827625) Mycobacterium smegmatis str. MC2 155 4535335 YP_887091.1 CDS MSMEG_2760 NC_008596.1 2827821 2828639 R identified by match to protein family HMM PF00480; polyphosphate glucokinase complement(2827821..2828639) Mycobacterium smegmatis str. MC2 155 4534848 YP_887092.1 CDS MSMEG_2762 NC_008596.1 2828808 2829659 D identified by match to protein family HMM PF00459; inositol-1-monophosphatase 2828808..2829659 Mycobacterium smegmatis str. MC2 155 4537182 YP_887093.1 CDS MSMEG_2761 NC_008596.1 2829633 2830283 R secreted alanine rich protein complement(2829633..2830283) Mycobacterium smegmatis str. MC2 155 4534535 YP_887094.1 CDS MSMEG_2763 NC_008596.1 2830449 2830751 D hypothetical protein 2830449..2830751 Mycobacterium smegmatis str. MC2 155 4531651 YP_887095.1 CDS MSMEG_2764 NC_008596.1 2830772 2831251 R hypothetical protein complement(2830772..2831251) Mycobacterium smegmatis str. MC2 155 4533201 YP_887096.1 CDS dut NC_008596.1 2831277 2831741 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 2831277..2831741 Mycobacterium smegmatis str. MC2 155 4532868 YP_887097.1 CDS MSMEG_2766 NC_008596.1 2831738 2832532 D hypothetical protein 2831738..2832532 Mycobacterium smegmatis str. MC2 155 4533523 YP_887098.1 CDS MSMEG_2767 NC_008596.1 2832575 2833276 R hypothetical protein complement(2832575..2833276) Mycobacterium smegmatis str. MC2 155 4535261 YP_887099.1 CDS MSMEG_2768 NC_008596.1 2833409 2833780 D identified by match to protein family HMM PF01336; OB-fold nucleic acid binding domain-containing protein 2833409..2833780 Mycobacterium smegmatis str. MC2 155 4530972 YP_887100.1 CDS MSMEG_2770 NC_008596.1 2833777 2834520 D integral membrane alanine and leucine rich protein 2833777..2834520 Mycobacterium smegmatis str. MC2 155 4533632 YP_887101.1 CDS MSMEG_2769 NC_008596.1 2834517 2835185 R identified by match to protein family HMM PF02080; match to protein family HMM PF02254; TrkB protein complement(2834517..2835185) Mycobacterium smegmatis str. MC2 155 4537661 YP_887102.1 CDS MSMEG_2771 NC_008596.1 2835223 2835897 R identified by match to protein family HMM PF02254; TrkA protein complement(2835223..2835897) Mycobacterium smegmatis str. MC2 155 4534410 YP_887103.1 CDS MSMEG_2772 NC_008596.1 2836004 2837998 D identified by match to protein family HMM PF00324; amino acid permease 2836004..2837998 Mycobacterium smegmatis str. MC2 155 4531920 YP_887104.1 CDS MSMEG_2773 NC_008596.1 2837995 2839188 D cg2084; identified by match to protein family HMM PF01938; RNA methyltransferase 2837995..2839188 Mycobacterium smegmatis str. MC2 155 4534120 YP_887105.1 CDS MSMEG_2774 NC_008596.1 2839197 2840276 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(2839197..2840276) Mycobacterium smegmatis str. MC2 155 4532352 YP_887106.1 CDS nhaA NC_008596.1 2840636 2841931 D identified by match to protein family HMM PF00999; match to protein family HMM PF06965; match to protein family HMM TIGR00773; Na+/H+ antiporter NhaA 2840636..2841931 Mycobacterium smegmatis str. MC2 155 4533499 YP_887107.1 CDS dxs NC_008596.1 2841956 2843872 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 2841956..2843872 Mycobacterium smegmatis str. MC2 155 4534451 YP_887108.1 CDS MSMEG_2777 NC_008596.1 2843910 2844824 D identified by match to protein family HMM PF00561; alpha/beta hydrolase 2843910..2844824 Mycobacterium smegmatis str. MC2 155 4534490 YP_887109.1 CDS MSMEG_2778 NC_008596.1 2844852 2846099 R identified by match to protein family HMM PF00570; match to protein family HMM PF01612; ribonuclease D complement(2844852..2846099) Mycobacterium smegmatis str. MC2 155 4532645 YP_887110.1 CDS MSMEG_2779 NC_008596.1 2846102 2846683 R hypothetical protein complement(2846102..2846683) Mycobacterium smegmatis str. MC2 155 4533629 YP_887111.1 CDS hemE NC_008596.1 2846805 2847866 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 2846805..2847866 Mycobacterium smegmatis str. MC2 155 4534005 YP_887112.1 CDS hemG NC_008596.1 2847863 2849224 D catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX; protoporphyrinogen oxidase 2847863..2849224 Mycobacterium smegmatis str. MC2 155 4531258 YP_887113.1 CDS MSMEG_2782 NC_008596.1 2849229 2849924 D identified by match to protein family HMM PF06778; hypothetical protein 2849229..2849924 Mycobacterium smegmatis str. MC2 155 4533763 YP_887114.1 CDS MSMEG_2783 NC_008596.1 2849980 2850276 D hypothetical protein 2849980..2850276 Mycobacterium smegmatis str. MC2 155 4537153 YP_887115.1 CDS msrB NC_008596.1 2850324 2850737 R identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357; methionine-R-sulfoxide reductase complement(2850324..2850737) Mycobacterium smegmatis str. MC2 155 4532973 YP_887116.1 CDS MSMEG_2785 NC_008596.1 2850789 2852081 R integral membrane protein complement(2850789..2852081) Mycobacterium smegmatis str. MC2 155 4535851 YP_887117.1 CDS MSMEG_2786 NC_008596.1 2852103 2853692 R identified by match to protein family HMM PF00561; alpha/beta hydrolase complement(2852103..2853692) Mycobacterium smegmatis str. MC2 155 4532127 YP_887118.1 CDS MSMEG_2787 NC_008596.1 2853712 2854494 R identified by match to protein family HMM PF01872; hypothetical protein complement(2853712..2854494) Mycobacterium smegmatis str. MC2 155 4531602 YP_887119.1 CDS MSMEG_2788 NC_008596.1 2854529 2855566 D identified by match to protein family HMM PF03969; ATP/GTP-binding integral membrane protein 2854529..2855566 Mycobacterium smegmatis str. MC2 155 4536574 YP_887120.1 CDS MSMEG_2789 NC_008596.1 2855568 2856098 R identified by match to protein family HMM PF00583; GNAT family acetyltransferase complement(2855568..2856098) Mycobacterium smegmatis str. MC2 155 4531886 YP_887121.1 CDS MSMEG_2790 NC_008596.1 2856103 2856627 R hypothetical protein complement(2856103..2856627) Mycobacterium smegmatis str. MC2 155 4536118 YP_887122.1 CDS MSMEG_2791 NC_008596.1 2856675 2857100 R identified by match to protein family HMM PF01243; pyridoxamine 5'-phosphate oxidase complement(2856675..2857100) Mycobacterium smegmatis str. MC2 155 4535425 YP_887123.1 CDS MSMEG_2792 NC_008596.1 2857143 2857877 R identified by match to protein family HMM PF02861; Clp amino terminal domain-containing protein complement(2857143..2857877) Mycobacterium smegmatis str. MC2 155 4535159 YP_887124.1 CDS MSMEG_2793 NC_008596.1 2857979 2859376 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor-type histidine kinase PrrB 2857979..2859376 Mycobacterium smegmatis str. MC2 155 4537637 YP_887125.1 CDS MSMEG_2794 NC_008596.1 2859380 2860042 R identified by similarity to SP:P33233; match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator complement(2859380..2860042) Mycobacterium smegmatis str. MC2 155 4534544 YP_887126.1 CDS MSMEG_2795 NC_008596.1 2860101 2861342 D identified by match to protein family HMM PF07690; transmembrane transporter 2860101..2861342 Mycobacterium smegmatis str. MC2 155 4532184 YP_887127.1 CDS MSMEG_2796 NC_008596.1 2861362 2862573 D identified by match to protein family HMM PF03595; integral membrane protein 2861362..2862573 Mycobacterium smegmatis str. MC2 155 4534620 YP_887128.1 CDS MSMEG_2797 NC_008596.1 2862579 2863511 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(2862579..2863511) Mycobacterium smegmatis str. MC2 155 4533855 YP_887129.1 CDS MSMEG_2799 NC_008596.1 2863788 2864840 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 2863788..2864840 Mycobacterium smegmatis str. MC2 155 4532497 YP_887130.1 CDS MSMEG_2798 NC_008596.1 2864837 2865649 R hypothetical protein complement(2864837..2865649) Mycobacterium smegmatis str. MC2 155 4536907 YP_887131.1 CDS MSMEG_2800 NC_008596.1 2865884 2866366 R identified by match to protein family HMM PF03358; NADPH-dependent FMN reductase complement(2865884..2866366) Mycobacterium smegmatis str. MC2 155 4532805 YP_887132.1 CDS MSMEG_2801 NC_008596.1 2866445 2866564 D hypothetical protein 2866445..2866564 Mycobacterium smegmatis str. MC2 155 4533583 YP_887133.1 CDS MSMEG_2802 NC_008596.1 2867294 2867707 D hypothetical protein 2867294..2867707 Mycobacterium smegmatis str. MC2 155 4532446 YP_887134.1 CDS MSMEG_2803 NC_008596.1 2867745 2867888 D hypothetical protein 2867745..2867888 Mycobacterium smegmatis str. MC2 155 4536090 YP_887135.1 CDS MSMEG_2804 NC_008596.1 2868002 2869096 D identified by match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229; two-component system sensor kinase 2868002..2869096 Mycobacterium smegmatis str. MC2 155 4532623 YP_887136.1 CDS MSMEG_2806 NC_008596.1 2869035 2869382 D two-component system response regulator 2869035..2869382 Mycobacterium smegmatis str. MC2 155 4536348 YP_887137.1 CDS MSMEG_2805 NC_008596.1 2869279 2870340 R identified by similarity to GB:CAD18826.1; ISMsm5, transposase complement(2869279..2870340) Mycobacterium smegmatis str. MC2 155 4531454 YP_887138.1 CDS MSMEG_2807 NC_008596.1 2870371 2870862 D identified by match to protein family HMM PF00196; two-component system response regulator 2870371..2870862 Mycobacterium smegmatis str. MC2 155 4536751 YP_887139.1 CDS MSMEG_2808 NC_008596.1 2871045 2871920 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short-chain dehydrogenase/reductase SDR 2871045..2871920 Mycobacterium smegmatis str. MC2 155 4533754 YP_887140.1 CDS MSMEG_2809 NC_008596.1 2871947 2872393 D hypothetical protein 2871947..2872393 Mycobacterium smegmatis str. MC2 155 4537317 YP_887141.1 CDS MSMEG_2810 NC_008596.1 2872390 2873601 D identified by match to protein family HMM PF07690; major facilitator superfamily protein 2872390..2873601 Mycobacterium smegmatis str. MC2 155 4533914 YP_887142.1 CDS MSMEG_2811 NC_008596.1 2873675 2874541 R identified by match to protein family HMM PF00296; hydride transferase 1 complement(2873675..2874541) Mycobacterium smegmatis str. MC2 155 4537530 YP_887143.1 CDS MSMEG_2812 NC_008596.1 2874564 2875436 R C-5 sterol desaturase complement(2874564..2875436) Mycobacterium smegmatis str. MC2 155 4534959 YP_887144.1 CDS MSMEG_2813 NC_008596.1 2875590 2876747 D identified by match to protein family HMM PF02518; match to protein family HMM PF07730; sensor kinase 2875590..2876747 Mycobacterium smegmatis str. MC2 155 4531130 YP_887145.1 CDS MSMEG_2817 NC_008596.1 2880208 2880504 D ABC transporter ATP-binding protein/permease 2880208..2880504 Mycobacterium smegmatis str. MC2 155 4532327 YP_887146.1 CDS MSMEG_2818 NC_008596.1 2880573 2881502 R This gene is similar at the protein level with ISRru1 in the IS Finder database.; identified by similarity to GP:16551202; match to protein family HMM PF00665; ISMsm1, transposase orfB complement(2880573..2881502) Mycobacterium smegmatis str. MC2 155 4531262 YP_887147.1 CDS MSMEG_2819 NC_008596.1 2881499 2881834 R similar at the protein level to ISRru1 in the IS Finder database.; identified by similarity to GP:16551202; match to protein family HMM PF01527; ISMsm1, transposase orfA complement(2881499..2881834) Mycobacterium smegmatis str. MC2 155 4535621 YP_887148.1 CDS MSMEG_2820 NC_008596.1 2882879 2884048 D hypothetical protein 2882879..2884048 Mycobacterium smegmatis str. MC2 155 4531346 YP_887149.1 CDS MSMEG_2824 NC_008596.1 2885869 2887335 D identified by similarity to GP:2935133; match to protein family HMM PF01609; IS1549, transposase 2885869..2887335 Mycobacterium smegmatis str. MC2 155 4536881 YP_887150.1 CDS MSMEG_2826 NC_008596.1 2888948 2890171 R hypothetical protein complement(2888948..2890171) Mycobacterium smegmatis str. MC2 155 4533808 YP_887151.1 CDS MSMEG_2827 NC_008596.1 2890162 2890698 R hypothetical protein complement(2890162..2890698) Mycobacterium smegmatis str. MC2 155 4535290 YP_887152.1 CDS MSMEG_2828 NC_008596.1 2890417 2891739 D identified by similarity to GP:150005; match to protein family HMM PF01610; IS1096, tnpA protein 2890417..2891739 Mycobacterium smegmatis str. MC2 155 4532367 YP_887153.1 CDS MSMEG_2829 NC_008596.1 2891747 2892448 R identified by similarity to GP:150004; match to protein family HMM PF07929; IS1096, tnpR protein complement(2891747..2892448) Mycobacterium smegmatis str. MC2 155 4535973 YP_887154.1 CDS MSMEG_2830 NC_008596.1 2892622 2893989 R identified by similarity to GP:150005; match to protein family HMM PF01610; ISMsm4, transposase complement(2892622..2893989) Mycobacterium smegmatis str. MC2 155 4536062 YP_887155.1 CDS MSMEG_2831 NC_008596.1 2894143 2894352 R hypothetical protein complement(2894143..2894352) Mycobacterium smegmatis str. MC2 155 4536240 YP_887156.1 CDS MSMEG_2832 NC_008596.1 2894648 2894974 R hypothetical protein complement(2894648..2894974) Mycobacterium smegmatis str. MC2 155 4532737 YP_887157.1 CDS MSMEG_2837 NC_008596.1 2896046 2898433 D identified by match to protein family HMM PF00384; match to protein family HMM PF01568; nitrate reductase NarB 2896046..2898433 Mycobacterium smegmatis str. MC2 155 4536484 YP_887158.1 CDS MSMEG_2838 NC_008596.1 2898445 2898927 D hypothetical protein 2898445..2898927 Mycobacterium smegmatis str. MC2 155 4536204 YP_887159.1 CDS MSMEG_2839 NC_008596.1 2899010 2901400 D identified by match to protein family HMM PF00575; transcriptional accessory protein 2899010..2901400 Mycobacterium smegmatis str. MC2 155 4534230 YP_887160.1 CDS MSMEG_2840 NC_008596.1 2901404 2902102 R hypothetical protein complement(2901404..2902102) Mycobacterium smegmatis str. MC2 155 4534850 YP_887161.1 CDS MSMEG_2841 NC_008596.1 2902133 2903578 R monooxygenase complement(2902133..2903578) Mycobacterium smegmatis str. MC2 155 4536664 YP_887162.1 CDS ssuD NC_008596.1 2903622 2904917 R nitrilotriacetate monooxygenase component A complement(2903622..2904917) Mycobacterium smegmatis str. MC2 155 4531528 YP_887163.1 CDS ssuD NC_008596.1 2904914 2906269 R nitrilotriacetate monooxygenase component A complement(2904914..2906269) Mycobacterium smegmatis str. MC2 155 4536866 YP_887164.1 CDS MSMEG_2844 NC_008596.1 2906266 2907879 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2906266..2907879) Mycobacterium smegmatis str. MC2 155 4533673 YP_887165.1 CDS MSMEG_2845 NC_008596.1 2907894 2908766 R identified by match to protein family HMM PF00528; ABC transporter permease complement(2907894..2908766) Mycobacterium smegmatis str. MC2 155 4530989 YP_887166.1 CDS MSMEG_2846 NC_008596.1 2908763 2909731 R identified by match to protein family HMM PF00528; ABC transporter permease complement(2908763..2909731) Mycobacterium smegmatis str. MC2 155 4531477 YP_887167.1 CDS MSMEG_2847 NC_008596.1 2909734 2911320 R identified by match to protein family HMM PF00496; extracellular solute-binding protein complement(2909734..2911320) Mycobacterium smegmatis str. MC2 155 4532333 YP_887168.1 CDS MSMEG_2848 NC_008596.1 2911537 2912946 R identified by match to protein family HMM PF07690; transmembrane efflux protein complement(2911537..2912946) Mycobacterium smegmatis str. MC2 155 4536996 YP_887169.1 CDS MSMEG_2849 NC_008596.1 2913021 2913422 D identified by match to protein family HMM PF01638; transcriptional regulatory protein 2913021..2913422 Mycobacterium smegmatis str. MC2 155 4533148 YP_887170.1 CDS MSMEG_2850 NC_008596.1 2913508 2913930 D identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026; cell entry (mce) related family protein 2913508..2913930 Mycobacterium smegmatis str. MC2 155 4535116 YP_887171.1 CDS MSMEG_2851 NC_008596.1 2913944 2914399 R hypothetical protein complement(2913944..2914399) Mycobacterium smegmatis str. MC2 155 4536868 YP_887172.1 CDS MSMEG_2852 NC_008596.1 2914474 2915304 R identified by match to protein family HMM PF00106; 3-oxoacyl-ACP reductase complement(2914474..2915304) Mycobacterium smegmatis str. MC2 155 4532034 YP_887173.1 CDS MSMEG_2853 NC_008596.1 2915518 2916330 D identified by match to protein family HMM PF02405; hypothetical protein 2915518..2916330 Mycobacterium smegmatis str. MC2 155 4530907 YP_887174.1 CDS MSMEG_2854 NC_008596.1 2916342 2917187 D identified by match to protein family HMM PF02405; hypothetical protein 2916342..2917187 Mycobacterium smegmatis str. MC2 155 4530999 YP_887175.1 CDS MSMEG_2855 NC_008596.1 2917214 2918401 D identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor Mce family protein 2917214..2918401 Mycobacterium smegmatis str. MC2 155 4537391 YP_887176.1 CDS MSMEG_2856 NC_008596.1 2918398 2919429 D identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor Mce family protein 2918398..2919429 Mycobacterium smegmatis str. MC2 155 4537680 YP_887177.1 CDS MSMEG_2857 NC_008596.1 2919429 2920505 D identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor Mce family protein 2919429..2920505 Mycobacterium smegmatis str. MC2 155 4536022 YP_887178.1 CDS MSMEG_2858 NC_008596.1 2920508 2921965 D identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor mce family protein 2920508..2921965 Mycobacterium smegmatis str. MC2 155 4532316 YP_887179.1 CDS MSMEG_2859 NC_008596.1 2921962 2923152 D identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor Mce family protein 2921962..2923152 Mycobacterium smegmatis str. MC2 155 4537602 YP_887180.1 CDS MSMEG_2860 NC_008596.1 2923152 2924639 D identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor mce family protein 2923152..2924639 Mycobacterium smegmatis str. MC2 155 4534432 YP_887181.1 CDS MSMEG_2861 NC_008596.1 2924650 2925162 R hypothetical protein complement(2924650..2925162) Mycobacterium smegmatis str. MC2 155 4533127 YP_887182.1 CDS MSMEG_2862 NC_008596.1 2925290 2925682 D hypothetical protein 2925290..2925682 Mycobacterium smegmatis str. MC2 155 4537169 YP_887183.1 CDS MSMEG_2863 NC_008596.1 2925664 2926083 D hypothetical protein 2925664..2926083 Mycobacterium smegmatis str. MC2 155 4535985 YP_887184.1 CDS MSMEG_2864 NC_008596.1 2926271 2926948 D hypothetical protein 2926271..2926948 Mycobacterium smegmatis str. MC2 155 4531148 YP_887185.1 CDS MSMEG_2865 NC_008596.1 2926945 2927517 D hypothetical protein 2926945..2927517 Mycobacterium smegmatis str. MC2 155 4536741 YP_887186.1 CDS MSMEG_2866 NC_008596.1 2927518 2928129 R identified by match to protein family HMM PF03061; thioesterase complement(2927518..2928129) Mycobacterium smegmatis str. MC2 155 4532768 YP_887187.1 CDS MSMEG_2867 NC_008596.1 2928126 2929694 R catalyzes transhydrogenation of 3-keto-4-ene-steroid to 3-keto-1,4-diene-steroid e.g., progesterone to 1,4-androstadiene-3,17-dione; 3-ketosteroid-delta-1-dehydrogenase complement(2928126..2929694) Mycobacterium smegmatis str. MC2 155 4534515 YP_887188.1 CDS MSMEG_2868 NC_008596.1 2929813 2930508 D identified by match to protein family HMM PF03551; PadR family transcriptional regulator 2929813..2930508 Mycobacterium smegmatis str. MC2 155 4533333 YP_887189.1 CDS MSMEG_2869 NC_008596.1 2930521 2932197 R initiates steroid ring degradation; catalyzes the transhydrogenation of 3-keto-4-ene-steroid to 3-keto-1,4-diene-steroid e.g., progesterone to 1,4-androstadiene-3,17-dione; 3-ketosteroid-delta-1-dehydrogenase complement(2930521..2932197) Mycobacterium smegmatis str. MC2 155 4532789 YP_887190.1 CDS MSMEG_2870 NC_008596.1 2932334 2933494 D identified by match to protein family HMM PF00355; oxygenase KshA 2932334..2933494 Mycobacterium smegmatis str. MC2 155 4534550 YP_887191.1 CDS MSMEG_2871 NC_008596.1 2933491 2933769 D hypothetical protein 2933491..2933769 Mycobacterium smegmatis str. MC2 155 4536257 YP_887192.1 CDS MSMEG_2872 NC_008596.1 2933753 2934544 D identified by match to protein family HMM PF00106; short-chain dehydrogenase/reductase SDR 2933753..2934544 Mycobacterium smegmatis str. MC2 155 4531919 YP_887193.1 CDS MSMEG_2873 NC_008596.1 2934557 2936146 D identified by match to protein family HMM PF00890; match to protein family HMM PF01266; hypothetical protein 2934557..2936146 Mycobacterium smegmatis str. MC2 155 4531451 YP_887194.1 CDS MSMEG_2874 NC_008596.1 2936210 2937286 R hypothetical protein complement(2936210..2937286) Mycobacterium smegmatis str. MC2 155 4532859 YP_887195.1 CDS MSMEG_2875 NC_008596.1 2937393 2938373 R identified by match to protein family HMM PF07859; esterase complement(2937393..2938373) Mycobacterium smegmatis str. MC2 155 4535324 YP_887196.1 CDS MSMEG_2876 NC_008596.1 2938382 2939260 R identified by match to protein family HMM PF00106; oxidoreductase, short chain dehydrogenase/reductase complement(2938382..2939260) Mycobacterium smegmatis str. MC2 155 4537620 YP_887197.1 CDS MSMEG_2877 NC_008596.1 2939257 2939754 R hypothetical protein complement(2939257..2939754) Mycobacterium smegmatis str. MC2 155 4534753 YP_887198.1 CDS MSMEG_2878 NC_008596.1 2939825 2940826 R identified by match to protein family HMM PF00441; acyl-CoA dehydrogenase complement(2939825..2940826) Mycobacterium smegmatis str. MC2 155 4536314 YP_887199.1 CDS MSMEG_2879 NC_008596.1 2940823 2941974 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; acyl-CoA dehydrogenase complement(2940823..2941974) Mycobacterium smegmatis str. MC2 155 4532896 YP_887200.1 CDS MSMEG_2880 NC_008596.1 2941974 2942756 R identified by match to protein family HMM PF00378; enoyl-CoA hydratase complement(2941974..2942756) Mycobacterium smegmatis str. MC2 155 4532560 YP_887201.1 CDS MSMEG_2881 NC_008596.1 2942785 2944206 R identified by match to protein family HMM PF00171; aldehyde dehydrogenase complement(2942785..2944206) Mycobacterium smegmatis str. MC2 155 4534384 YP_887202.1 CDS MSMEG_2882 NC_008596.1 2944225 2945340 R identified by match to protein family HMM PF00107; 5-exo-alcohol dehydrogenase complement(2944225..2945340) Mycobacterium smegmatis str. MC2 155 4537310 YP_887203.1 CDS MSMEG_2883 NC_008596.1 2945429 2946994 R activates fatty acids by binding to coenzyme A; acyl-CoA synthetase complement(2945429..2946994) Mycobacterium smegmatis str. MC2 155 4532368 YP_887204.1 CDS MSMEG_2884 NC_008596.1 2947132 2949054 D cyclohexanone monooxygenase 2947132..2949054 Mycobacterium smegmatis str. MC2 155 4535438 YP_887205.1 CDS MSMEG_2885 NC_008596.1 2949051 2949938 D identified by match to protein family HMM PF00106; short-chain dehydrogenase/reductase SDR 2949051..2949938 Mycobacterium smegmatis str. MC2 155 4532902 YP_887206.1 CDS MSMEG_2886 NC_008596.1 2949940 2950560 R identified by match to protein family HMM PF07876; stress responsive A/B barrel domain family protein complement(2949940..2950560) Mycobacterium smegmatis str. MC2 155 4535236 YP_887207.1 CDS MSMEG_2887 NC_008596.1 2950566 2950952 R hypothetical protein complement(2950566..2950952) Mycobacterium smegmatis str. MC2 155 4537569 YP_887208.1 CDS MSMEG_2889 NC_008596.1 2951016 2952254 D identified by match to protein family HMM PF00724; NADH:flavin oxidoreductase 2951016..2952254 Mycobacterium smegmatis str. MC2 155 4533999 YP_887209.1 CDS MSMEG_2888 NC_008596.1 2952197 2953147 R identified by match to protein family HMM PF07859; lipase complement(2952197..2953147) Mycobacterium smegmatis str. MC2 155 4537322 YP_887210.1 CDS MSMEG_2890 NC_008596.1 2953144 2954040 R identified by match to protein family HMM PF01614; transcriptional regulator complement(2953144..2954040) Mycobacterium smegmatis str. MC2 155 4536195 YP_887211.1 CDS MSMEG_2891 NC_008596.1 2954224 2955126 R identified by match to protein family HMM PF00903; biphenyl-2,3-diol 1,2-dioxygenase complement(2954224..2955126) Mycobacterium smegmatis str. MC2 155 4536685 YP_887212.1 CDS MSMEG_2892 NC_008596.1 2955143 2956324 R identified by match to protein family HMM PF08028; pigment production hydroxylase complement(2955143..2956324) Mycobacterium smegmatis str. MC2 155 4531911 YP_887213.1 CDS MSMEG_2893 NC_008596.1 2956384 2957439 R identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; oxidoreductase, NAD/FAD-binding complement(2956384..2957439) Mycobacterium smegmatis str. MC2 155 4535746 YP_887214.1 CDS MSMEG_2894 NC_008596.1 2957572 2959194 D identified by match to protein family HMM PF01266; steroid monooxygenase 2957572..2959194 Mycobacterium smegmatis str. MC2 155 4536861 YP_887215.1 CDS MSMEG_2895 NC_008596.1 2959295 2960089 D identified by match to protein family HMM PF00106; short chain oxidoreductase 2959295..2960089 Mycobacterium smegmatis str. MC2 155 4531726 YP_887216.1 CDS MSMEG_2896 NC_008596.1 2960097 2960960 D identified by match to protein family HMM PF00296; hypothetical protein 2960097..2960960 Mycobacterium smegmatis str. MC2 155 4530937 YP_887217.1 CDS MSMEG_2897 NC_008596.1 2961061 2961381 D hypothetical protein 2961061..2961381 Mycobacterium smegmatis str. MC2 155 4536284 YP_887218.1 CDS MSMEG_2898 NC_008596.1 2961476 2962030 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2961476..2962030 Mycobacterium smegmatis str. MC2 155 4536878 YP_887219.1 CDS MSMEG_2899 NC_008596.1 2962139 2962834 D identified by match to protein family HMM PF00106; match to protein family HMM PF07993; short chain dehydrogenase 2962139..2962834 Mycobacterium smegmatis str. MC2 155 4536939 YP_887220.1 CDS MSMEG_2901 NC_008596.1 2962927 2963490 D hypothetical protein 2962927..2963490 Mycobacterium smegmatis str. MC2 155 4531094 YP_887221.1 CDS MSMEG_2900 NC_008596.1 2963487 2964347 R identified by match to protein family HMM PF00561; 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase complement(2963487..2964347) Mycobacterium smegmatis str. MC2 155 4536464 YP_887222.1 CDS MSMEG_2902 NC_008596.1 2964456 2965199 D identified by match to protein family HMM PF00795; hydrolase 2964456..2965199 Mycobacterium smegmatis str. MC2 155 4537277 YP_887223.1 CDS MSMEG_2904 NC_008596.1 2967055 2967447 R MmcI protein complement(2967055..2967447) Mycobacterium smegmatis str. MC2 155 4532239 YP_887224.1 CDS MSMEG_2905 NC_008596.1 2967713 2968099 D identified by match to protein family HMM PF01638; transcriptional regulator 2967713..2968099 Mycobacterium smegmatis str. MC2 155 4530914 YP_887225.1 CDS MSMEG_2906 NC_008596.1 2968218 2969042 D hypothetical protein 2968218..2969042 Mycobacterium smegmatis str. MC2 155 4535999 YP_887226.1 CDS MSMEG_2907 NC_008596.1 2969066 2970517 R identified by match to protein family HMM PF01232; match to protein family HMM PF08125; oxidoreductase YeiQ complement(2969066..2970517) Mycobacterium smegmatis str. MC2 155 4535697 YP_887227.1 CDS MSMEG_2908 NC_008596.1 2970514 2971437 R identified by match to protein family HMM PF00294; 2-keto-3-deoxygluconate kinase complement(2970514..2971437) Mycobacterium smegmatis str. MC2 155 4534140 YP_887228.1 CDS MSMEG_2909 NC_008596.1 2971434 2972642 R identified by match to protein family HMM PF01188; match to protein family HMM PF02746; starvation-sensing protein RspA complement(2971434..2972642) Mycobacterium smegmatis str. MC2 155 4534566 YP_887229.1 CDS MSMEG_2910 NC_008596.1 2972708 2973415 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 2972708..2973415 Mycobacterium smegmatis str. MC2 155 4536799 YP_887230.1 CDS MSMEG_2911 NC_008596.1 2973561 2974910 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; integral membrane transporter 2973561..2974910 Mycobacterium smegmatis str. MC2 155 4534329 YP_887231.1 CDS MSMEG_2912 NC_008596.1 2974935 2976311 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; inner membrane metabolite transporter YdfJ 2974935..2976311 Mycobacterium smegmatis str. MC2 155 4534592 YP_887232.1 CDS MSMEG_2914 NC_008596.1 2976308 2977282 D identified by match to protein family HMM PF00107; L-idonate 5-dehydrogenase 2976308..2977282 Mycobacterium smegmatis str. MC2 155 4536854 YP_887233.1 CDS MSMEG_2913 NC_008596.1 2977263 2978126 R identified by match to protein family HMM PF00561; hydrolase complement(2977263..2978126) Mycobacterium smegmatis str. MC2 155 4535504 YP_887234.1 CDS MSMEG_2915 NC_008596.1 2978144 2979652 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(2978144..2979652) Mycobacterium smegmatis str. MC2 155 4533111 YP_887235.1 CDS MSMEG_2916 NC_008596.1 2979652 2980419 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator, PhoP family protein complement(2979652..2980419) Mycobacterium smegmatis str. MC2 155 4537234 YP_887236.1 CDS MSMEG_2917 NC_008596.1 2980507 2981214 R hypothetical protein complement(2980507..2981214) Mycobacterium smegmatis str. MC2 155 4532266 YP_887237.1 CDS MSMEG_2918 NC_008596.1 2981309 2982106 R identified by match to protein family HMM PF00106; short-chain dehydrogenase/reductase SDR complement(2981309..2982106) Mycobacterium smegmatis str. MC2 155 4532565 YP_887238.1 CDS MSMEG_2919 NC_008596.1 2982192 2983193 R identified by match to protein family HMM PF02558; 2-dehydropantoate 2-reductase complement(2982192..2983193) Mycobacterium smegmatis str. MC2 155 4537007 YP_887239.1 CDS MSMEG_2920 NC_008596.1 2983601 2984632 D identified by match to protein family HMM PF00248; aldo/keto reductase 2983601..2984632 Mycobacterium smegmatis str. MC2 155 4532474 YP_887240.1 CDS MSMEG_2921 NC_008596.1 2984629 2985426 D identified by match to protein family HMM PF00881; NADPH-flavin oxidoreductase 2984629..2985426 Mycobacterium smegmatis str. MC2 155 4532504 YP_887241.1 CDS MSMEG_2922 NC_008596.1 2985445 2986239 R hypothetical protein complement(2985445..2986239) Mycobacterium smegmatis str. MC2 155 4531843 YP_887242.1 CDS MSMEG_2923 NC_008596.1 2986362 2987162 D identified by match to protein family HMM PF00106; dehydrogenase/reductase SDR family protein member 1 2986362..2987162 Mycobacterium smegmatis str. MC2 155 4530888 YP_887243.1 CDS MSMEG_2924 NC_008596.1 2987165 2988118 R identified by match to protein family HMM PF04069; permease binding-protein component complement(2987165..2988118) Mycobacterium smegmatis str. MC2 155 4536397 YP_887244.1 CDS MSMEG_2925 NC_008596.1 2988115 2988897 R identified by match to protein family HMM PF00528; permease membrane component complement(2988115..2988897) Mycobacterium smegmatis str. MC2 155 4537662 YP_887245.1 CDS MSMEG_2926 NC_008596.1 2988894 2990078 R identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186; glycine betaine/carnitine/choline transport ATP-binding protein opuCA complement(2988894..2990078) Mycobacterium smegmatis str. MC2 155 4535642 YP_887246.1 CDS MSMEG_2927 NC_008596.1 2990071 2990718 R identified by match to protein family HMM PF00528; ABC transporter permease complement(2990071..2990718) Mycobacterium smegmatis str. MC2 155 4535203 YP_887247.1 CDS MSMEG_2928 NC_008596.1 2990857 2991939 D hypothetical protein 2990857..2991939 Mycobacterium smegmatis str. MC2 155 4535915 YP_887248.1 CDS MSMEG_2929 NC_008596.1 2992021 2992650 D identified by match to protein family HMM PF03061; thioesterase 2992021..2992650 Mycobacterium smegmatis str. MC2 155 4536192 YP_887249.1 CDS MSMEG_2930 NC_008596.1 2992647 2993078 D identified by match to protein family HMM TIGR02611; hypothetical protein 2992647..2993078 Mycobacterium smegmatis str. MC2 155 4532971 YP_887250.1 CDS thrS NC_008596.1 2993163 2995217 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 2993163..2995217 Mycobacterium smegmatis str. MC2 155 4535275 YP_887251.1 CDS MSMEG_2932 NC_008596.1 2995226 2995843 D identified by match to protein family HMM PF01230; HIT family protein hydrolase 2995226..2995843 Mycobacterium smegmatis str. MC2 155 4535144 YP_887252.1 CDS MSMEG_2933 NC_008596.1 2995840 2996508 D identified by match to protein family HMM PF01066; phosphatidylinositol synthase 2995840..2996508 Mycobacterium smegmatis str. MC2 155 4534967 YP_887253.1 CDS MSMEG_2934 NC_008596.1 2996505 2997419 D acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 2996505..2997419 Mycobacterium smegmatis str. MC2 155 4536785 YP_887254.1 CDS MSMEG_2935 NC_008596.1 2997421 2998581 D identified by match to protein family HMM PF00534; phosphatidylinositol alpha-mannosyltransferase 2997421..2998581 Mycobacterium smegmatis str. MC2 155 4536758 YP_887255.1 CDS MSMEG_2936 NC_008596.1 2998581 2999636 D identified by match to protein family HMM PF00293; hydrolase, nudix family protein 2998581..2999636 Mycobacterium smegmatis str. MC2 155 4535499 YP_887256.1 CDS MSMEG_2937 NC_008596.1 2999713 3000624 D with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS 2999713..3000624 Mycobacterium smegmatis str. MC2 155 4533765 YP_887257.1 CDS tesB NC_008596.1 3000634 3001485 D identified by match to protein family HMM PF02551; match to protein family HMM TIGR00189; acyl-CoA thioesterase 3000634..3001485 Mycobacterium smegmatis str. MC2 155 4537299 YP_887258.1 CDS MSMEG_2939 NC_008596.1 3001482 3002063 D with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate; glutamine amidotransferase subunit PdxT 3001482..3002063 Mycobacterium smegmatis str. MC2 155 4534368 YP_887259.1 CDS MSMEG_2940 NC_008596.1 3002244 3002999 D identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 3002244..3002999 Mycobacterium smegmatis str. MC2 155 4535717 YP_887260.1 CDS MSMEG_2941 NC_008596.1 3003003 3003653 R identified by match to protein family HMM PF01370; match to protein family HMM PF05368; NAD dependent epimerase/dehydratase complement(3003003..3003653) Mycobacterium smegmatis str. MC2 155 4534412 YP_887261.1 CDS MSMEG_2942 NC_008596.1 3003678 3004109 R identified by match to protein family HMM PF00903; glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein complement(3003678..3004109) Mycobacterium smegmatis str. MC2 155 4531054 YP_887262.1 CDS ruvC NC_008596.1 3004295 3004852 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 3004295..3004852 Mycobacterium smegmatis str. MC2 155 4533548 YP_887263.1 CDS ruvA NC_008596.1 3004849 3005436 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 3004849..3005436 Mycobacterium smegmatis str. MC2 155 4537723 YP_887264.1 CDS ruvB NC_008596.1 3005439 3006494 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 3005439..3006494 Mycobacterium smegmatis str. MC2 155 4536961 YP_887265.1 CDS MSMEG_2946 NC_008596.1 3006499 3006885 D identified by match to protein family HMM PF06993; transmembrane protein 3006499..3006885 Mycobacterium smegmatis str. MC2 155 4531772 YP_887266.1 CDS MSMEG_2947 NC_008596.1 3007026 3007814 D identified by match to protein family HMM PF04199; polyketide cyclase/dehydrase 3007026..3007814 Mycobacterium smegmatis str. MC2 155 4534477 YP_887267.1 CDS MSMEG_2948 NC_008596.1 3007814 3008629 D identified by match to protein family HMM PF00378; 6-oxocamphor hydrolase 3007814..3008629 Mycobacterium smegmatis str. MC2 155 4537558 YP_887268.1 CDS MSMEG_2949 NC_008596.1 3008674 3011034 D identified by match to protein family HMM PF01315; match to protein family HMM PF02738; carbon-monoxide dehydrogenase 3008674..3011034 Mycobacterium smegmatis str. MC2 155 4536064 YP_887269.1 CDS MSMEG_2950 NC_008596.1 3011031 3011849 D identified by match to protein family HMM PF00941; carbon monoxide dehydrogenase, medium chain 3011031..3011849 Mycobacterium smegmatis str. MC2 155 4535165 YP_887270.1 CDS MSMEG_2951 NC_008596.1 3011842 3012327 D identified by match to protein family HMM PF00111; match to protein family HMM PF01799; 2Fe-2S-binding domain-containing protein 3011842..3012327 Mycobacterium smegmatis str. MC2 155 4532892 YP_887271.1 CDS MSMEG_2952 NC_008596.1 3012396 3013715 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; transporter 3012396..3013715 Mycobacterium smegmatis str. MC2 155 4531691 YP_887272.1 CDS MSMEG_2953 NC_008596.1 3013795 3014115 D identified by match to protein family HMM PF07110; match to protein family HMM TIGR02118; ethyl tert-butyl ether degradation EthD 3013795..3014115 Mycobacterium smegmatis str. MC2 155 4532259 YP_887273.1 CDS MSMEG_2954 NC_008596.1 3014135 3015154 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; LacI family transcriptional regulator 3014135..3015154 Mycobacterium smegmatis str. MC2 155 4536840 YP_887274.1 CDS MSMEG_2955 NC_008596.1 3015273 3015719 D hypothetical protein 3015273..3015719 Mycobacterium smegmatis str. MC2 155 4537081 YP_887275.1 CDS MSMEG_2956 NC_008596.1 3015785 3019291 R identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746; NAD dependent epimerase/dehydratase complement(3015785..3019291) Mycobacterium smegmatis str. MC2 155 4532134 YP_887276.1 CDS MSMEG_2957 NC_008596.1 3019572 3020189 R hypothetical protein complement(3019572..3020189) Mycobacterium smegmatis str. MC2 155 4535260 YP_887277.1 CDS MSMEG_2958 NC_008596.1 3020304 3021023 D hypothetical protein 3020304..3021023 Mycobacterium smegmatis str. MC2 155 4533143 YP_887278.1 CDS gabT NC_008596.1 3021057 3022397 R catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase complement(3021057..3022397) Mycobacterium smegmatis str. MC2 155 4532510 YP_887279.1 CDS yajC NC_008596.1 3022735 3023058 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 3022735..3023058 Mycobacterium smegmatis str. MC2 155 4532207 YP_887280.1 CDS secD NC_008596.1 3023131 3024993 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 3023131..3024993 Mycobacterium smegmatis str. MC2 155 4536507 YP_887281.1 CDS secF NC_008596.1 3024998 3026266 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 3024998..3026266 Mycobacterium smegmatis str. MC2 155 4532984 YP_887282.1 CDS MSMEG_2963 NC_008596.1 3026272 3027939 D identified by match to protein family HMM PF00496; extracellular solute-binding protein 3026272..3027939 Mycobacterium smegmatis str. MC2 155 4533118 YP_887283.1 CDS MSMEG_2964 NC_008596.1 3027947 3028489 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 3027947..3028489 Mycobacterium smegmatis str. MC2 155 4535093 YP_887284.1 CDS relA NC_008596.1 3028533 3030926 D identified by similarity to SP:P52560; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; GTP pyrophosphokinase 3028533..3030926 Mycobacterium smegmatis str. MC2 155 4536380 YP_887285.1 CDS MSMEG_2966 NC_008596.1 3030981 3032378 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator family protein transporter complement(3030981..3032378) Mycobacterium smegmatis str. MC2 155 4537633 YP_887286.1 CDS MSMEG_2967 NC_008596.1 3032378 3032989 R identified by similarity to GB:BAC46503.1; match to protein family HMM PF01613; hypothetical protein complement(3032378..3032989) Mycobacterium smegmatis str. MC2 155 4531415 YP_887287.1 CDS MSMEG_2968 NC_008596.1 3033121 3033750 D hypothetical protein 3033121..3033750 Mycobacterium smegmatis str. MC2 155 4537060 YP_887288.1 CDS MSMEG_2969 NC_008596.1 3033747 3034880 D identified by match to protein family HMM PF00724; NADH:flavin oxidoreductase 3033747..3034880 Mycobacterium smegmatis str. MC2 155 4533224 YP_887289.1 CDS MSMEG_2970 NC_008596.1 3034877 3035743 D identified by match to protein family HMM PF01522; polysaccharide deacetylase 3034877..3035743 Mycobacterium smegmatis str. MC2 155 4531460 YP_887290.1 CDS MSMEG_2971 NC_008596.1 3035748 3037301 R regulatory protein complement(3035748..3037301) Mycobacterium smegmatis str. MC2 155 4531718 YP_887291.1 CDS MSMEG_2972 NC_008596.1 3037408 3038829 D identified by match to protein family HMM PF02133; permease, cytosine/purines, uracil, thiamine, allantoin family protein 3037408..3038829 Mycobacterium smegmatis str. MC2 155 4532479 YP_887292.1 CDS MSMEG_2973 NC_008596.1 3038835 3039791 R identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase complement(3038835..3039791) Mycobacterium smegmatis str. MC2 155 4535922 YP_887293.1 CDS MSMEG_2974 NC_008596.1 3039885 3040748 R identified by match to protein family HMM PF00160; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(3039885..3040748) Mycobacterium smegmatis str. MC2 155 4534079 YP_887294.1 CDS MSMEG_2975 NC_008596.1 3040917 3041594 D identified by match to protein family HMM PF00753; metallo-beta-lactamase 3040917..3041594 Mycobacterium smegmatis str. MC2 155 4534055 YP_887295.1 CDS hisS NC_008596.1 3041591 3042871 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 3041591..3042871 Mycobacterium smegmatis str. MC2 155 4532580 YP_887296.1 CDS MSMEG_2977 NC_008596.1 3042909 3043118 D hypothetical protein 3042909..3043118 Mycobacterium smegmatis str. MC2 155 4537041 YP_887297.1 CDS MSMEG_2978 NC_008596.1 3043394 3044086 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(3043394..3044086) Mycobacterium smegmatis str. MC2 155 4534678 YP_887298.1 CDS MSMEG_2979 NC_008596.1 3044086 3044898 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(3044086..3044898) Mycobacterium smegmatis str. MC2 155 4534472 YP_887299.1 CDS MSMEG_2980 NC_008596.1 3044895 3046022 R identified by match to protein family HMM PF02653; hypothetical protein complement(3044895..3046022) Mycobacterium smegmatis str. MC2 155 4534440 YP_887300.1 CDS MSMEG_2981 NC_008596.1 3046019 3046903 R identified by match to protein family HMM PF02653; branched-chain amino acid ABC transporter permease complement(3046019..3046903) Mycobacterium smegmatis str. MC2 155 4531276 YP_887301.1 CDS MSMEG_2982 NC_008596.1 3046939 3048207 R identified by match to protein family HMM PF01094; periplasmic binding protein complement(3046939..3048207) Mycobacterium smegmatis str. MC2 155 4534138 YP_887302.1 CDS MSMEG_2983 NC_008596.1 3048445 3048876 D hypothetical protein 3048445..3048876 Mycobacterium smegmatis str. MC2 155 4536050 YP_887303.1 CDS MSMEG_2984 NC_008596.1 3049055 3049870 R identified by match to protein family HMM PF00561; hydrolase complement(3049055..3049870) Mycobacterium smegmatis str. MC2 155 4535497 YP_887304.1 CDS MSMEG_2985 NC_008596.1 3049867 3051504 R identified by match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723; fumarate hydratase class I, anaerobic complement(3049867..3051504) Mycobacterium smegmatis str. MC2 155 4531647 YP_887305.1 CDS MSMEG_2986 NC_008596.1 3051501 3052844 R identified by match to protein family HMM PF01425; amidohydrolase complement(3051501..3052844) Mycobacterium smegmatis str. MC2 155 4534518 YP_887306.1 CDS MSMEG_2988 NC_008596.1 3053983 3054882 R identified by match to protein family HMM PF00795; carbon-nitrogen hydrolase complement(3053983..3054882) Mycobacterium smegmatis str. MC2 155 4536490 YP_887307.1 CDS MSMEG_2989 NC_008596.1 3055061 3056095 D identified by match to protein family HMM PF00532; LacI family transcriptional regulator 3055061..3056095 Mycobacterium smegmatis str. MC2 155 4535736 YP_887308.1 CDS MSMEG_2990 NC_008596.1 3056145 3057179 D identified by match to protein family HMM PF04055; Fe-S protein, radical SAM family protein 3056145..3057179 Mycobacterium smegmatis str. MC2 155 4535099 YP_887309.1 CDS MSMEG_2991 NC_008596.1 3057281 3058564 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00710; permease of the major facilitator superfamily protein 3057281..3058564 Mycobacterium smegmatis str. MC2 155 4534669 YP_887310.1 CDS MSMEG_2992 NC_008596.1 3058595 3059857 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase complement(3058595..3059857) Mycobacterium smegmatis str. MC2 155 4534887 YP_887311.1 CDS MSMEG_2993 NC_008596.1 3059854 3060993 R identified by match to protein family HMM PF00441; match to protein family HMM PF02771; acyl-CoA dehydrogenase complement(3059854..3060993) Mycobacterium smegmatis str. MC2 155 4533785 YP_887312.1 CDS MSMEG_2994 NC_008596.1 3061057 3062286 R identified by match to protein family HMM PF04909; amidohydrolase complement(3061057..3062286) Mycobacterium smegmatis str. MC2 155 4535772 YP_887313.1 CDS MSMEG_2995 NC_008596.1 3062374 3063033 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(3062374..3063033) Mycobacterium smegmatis str. MC2 155 4536281 YP_887314.1 CDS MSMEG_2996 NC_008596.1 3063126 3063980 D identified by match to protein family HMM PF00296; hypothetical protein 3063126..3063980 Mycobacterium smegmatis str. MC2 155 4537697 YP_887315.1 CDS MSMEG_2997 NC_008596.1 3063977 3064876 D hypothetical protein 3063977..3064876 Mycobacterium smegmatis str. MC2 155 4532919 YP_887316.1 CDS MSMEG_2998 NC_008596.1 3064877 3065413 R hypothetical protein complement(3064877..3065413) Mycobacterium smegmatis str. MC2 155 4533357 YP_887317.1 CDS MSMEG_2999 NC_008596.1 3065438 3067063 R identified by match to protein family HMM PF05960; hypothetical protein complement(3065438..3067063) Mycobacterium smegmatis str. MC2 155 4536867 YP_887318.1 CDS MSMEG_3000 NC_008596.1 3067056 3067949 R identified by match to protein family HMM PF04228; metallopeptidase, zinc binding complement(3067056..3067949) Mycobacterium smegmatis str. MC2 155 4536809 YP_887319.1 CDS MSMEG_3002 NC_008596.1 3068022 3069497 D identified by match to protein family HMM PF00135; para-nitrobenzyl esterase 3068022..3069497 Mycobacterium smegmatis str. MC2 155 4536511 YP_887320.1 CDS MSMEG_3001 NC_008596.1 3069494 3070009 R hypothetical protein complement(3069494..3070009) Mycobacterium smegmatis str. MC2 155 4531722 YP_887321.1 CDS aspS NC_008596.1 3070138 3071934 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 3070138..3071934 Mycobacterium smegmatis str. MC2 155 4536215 YP_887322.1 CDS MSMEG_3004 NC_008596.1 3071978 3072433 D identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026; hypothetical protein 3071978..3072433 Mycobacterium smegmatis str. MC2 155 4536131 YP_887323.1 CDS MSMEG_3005 NC_008596.1 3072435 3073382 R Converts (S)-3-hydroxyactk-CoA to 3-oxoayl-CoA; 3-hydroxyacyl-CoA dehydrogenase complement(3072435..3073382) Mycobacterium smegmatis str. MC2 155 4531638 YP_887324.1 CDS MSMEG_3006 NC_008596.1 3073373 3074650 R identified by match to protein family HMM PF00465; Fe-dependent alcohol dehydrogenase complement(3073373..3074650) Mycobacterium smegmatis str. MC2 155 4537715 YP_887325.1 CDS MSMEG_3007 NC_008596.1 3074647 3076152 R identified by match to protein family HMM PF00171; succinate-semialdehyde dehydrogenase complement(3074647..3076152) Mycobacterium smegmatis str. MC2 155 4531585 YP_887326.1 CDS MSMEG_3008 NC_008596.1 3076326 3078044 D identified by match to protein family HMM PF01590; match to protein family HMM PF02954; sigma 54 type regulator 3076326..3078044 Mycobacterium smegmatis str. MC2 155 4536692 YP_887327.1 CDS MSMEG_3009 NC_008596.1 3078062 3078793 R identified by match to protein family HMM PF00106; 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase complement(3078062..3078793) Mycobacterium smegmatis str. MC2 155 4537503 YP_887328.1 CDS MSMEG_3010 NC_008596.1 3078871 3079857 D identified by match to protein family HMM PF07859; acetyl-hydrolase 3078871..3079857 Mycobacterium smegmatis str. MC2 155 4532811 YP_887329.1 CDS MSMEG_3011 NC_008596.1 3079874 3081520 D identified by match to protein family HMM PF01266; steroid monooxygenase 3079874..3081520 Mycobacterium smegmatis str. MC2 155 4534695 YP_887330.1 CDS MSMEG_3012 NC_008596.1 3081596 3082780 R identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acetyl-CoA acetyltransferase complement(3081596..3082780) Mycobacterium smegmatis str. MC2 155 4536794 YP_887331.1 CDS MSMEG_3013 NC_008596.1 3082878 3083348 D identified by match to protein family HMM PF01638; transcriptional regulator family protein 3082878..3083348 Mycobacterium smegmatis str. MC2 155 4536530 YP_887332.1 CDS MSMEG_3014 NC_008596.1 3083458 3083838 R identified by match to protein family HMM PF04944; hypothetical protein complement(3083458..3083838) Mycobacterium smegmatis str. MC2 155 4537009 YP_887333.1 CDS MSMEG_3015 NC_008596.1 3083882 3084628 R hypothetical protein complement(3083882..3084628) Mycobacterium smegmatis str. MC2 155 4534738 YP_887334.1 CDS MSMEG_3016 NC_008596.1 3084783 3088091 D identified by match to protein family HMM PF01841; hypothetical protein 3084783..3088091 Mycobacterium smegmatis str. MC2 155 4533724 YP_887335.1 CDS MSMEG_3017 NC_008596.1 3088091 3090805 D identified by match to protein family HMM PF04168; match to protein family HMM PF04169; match to protein family HMM PF04174; hypothetical protein 3088091..3090805 Mycobacterium smegmatis str. MC2 155 4533511 YP_887336.1 CDS MSMEG_3018 NC_008596.1 3090802 3091722 D identified by match to protein family HMM PF01841; transglutaminase domain-containing protein 3090802..3091722 Mycobacterium smegmatis str. MC2 155 4535100 YP_887337.1 CDS MSMEG_3019 NC_008596.1 3091715 3092743 D hypothetical protein 3091715..3092743 Mycobacterium smegmatis str. MC2 155 4536722 YP_887338.1 CDS MSMEG_3020 NC_008596.1 3092925 3093758 D hypothetical protein 3092925..3093758 Mycobacterium smegmatis str. MC2 155 4532144 YP_887339.1 CDS MSMEG_3021 NC_008596.1 3093797 3095140 D identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF07728; recombination factor protein RarA 3093797..3095140 Mycobacterium smegmatis str. MC2 155 4533623 YP_887340.1 CDS MSMEG_3022 NC_008596.1 3095235 3095540 R transglycosylase associated protein complement(3095235..3095540) Mycobacterium smegmatis str. MC2 155 4536684 YP_887341.1 CDS MSMEG_3024 NC_008596.1 3096393 3096782 D identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein 3096393..3096782 Mycobacterium smegmatis str. MC2 155 4534640 YP_887342.1 CDS alaS NC_008596.1 3096983 3099673 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 3096983..3099673 Mycobacterium smegmatis str. MC2 155 4531109 YP_887343.1 CDS MSMEG_3026 NC_008596.1 3099680 3100192 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 3099680..3100192 Mycobacterium smegmatis str. MC2 155 4531930 YP_887344.1 CDS MSMEG_3027 NC_008596.1 3100185 3101429 D identified by match to protein family HMM PF02618; hypothetical protein 3100185..3101429 Mycobacterium smegmatis str. MC2 155 4530944 YP_887345.1 CDS aroE NC_008596.1 3101419 3102249 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 3101419..3102249 Mycobacterium smegmatis str. MC2 155 4534614 YP_887346.1 CDS MSMEG_3029 NC_008596.1 3102259 3102702 D identified by match to protein family HMM PF01478; peptidase, A24 (type IV prepilin peptidase) family protein 3102259..3102702 Mycobacterium smegmatis str. MC2 155 4533371 YP_887347.1 CDS aroC NC_008596.1 3102792 3103991 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 3102792..3103991 Mycobacterium smegmatis str. MC2 155 4533365 YP_887348.1 CDS aroK NC_008596.1 3103991 3104725 D catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 3103991..3104725 Mycobacterium smegmatis str. MC2 155 4537134 YP_887349.1 CDS aroB NC_008596.1 3104730 3105851 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 3104730..3105851 Mycobacterium smegmatis str. MC2 155 4533222 YP_887350.1 CDS MSMEG_3032 NC_008596.1 3105842 3106417 R hypothetical protein complement(3105842..3106417) Mycobacterium smegmatis str. MC2 155 4536145 YP_887351.1 CDS MSMEG_3034 NC_008596.1 3106451 3107587 D identified by match to protein family HMM PF00557; metallopeptidase, M24 family protein 3106451..3107587 Mycobacterium smegmatis str. MC2 155 4531119 YP_887352.1 CDS efp NC_008596.1 3107613 3108176 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 3107613..3108176 Mycobacterium smegmatis str. MC2 155 4532568 YP_887353.1 CDS nusB NC_008596.1 3108169 3108651 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 3108169..3108651 Mycobacterium smegmatis str. MC2 155 4531739 YP_887354.1 CDS MSMEG_3038 NC_008596.1 3111537 3111776 D hypothetical protein 3111537..3111776 Mycobacterium smegmatis str. MC2 155 4533447 YP_887355.1 CDS MSMEG_3039 NC_008596.1 3111781 3112989 R identified by match to protein family HMM PF01266; match to protein family HMM PF01494; monooxygenase complement(3111781..3112989) Mycobacterium smegmatis str. MC2 155 4530947 YP_887356.1 CDS MSMEG_3040 NC_008596.1 3113057 3114259 R identified by match to protein family HMM PF00144; beta-lactamase complement(3113057..3114259) Mycobacterium smegmatis str. MC2 155 4537139 YP_887357.1 CDS MSMEG_3041 NC_008596.1 3114301 3114978 R identified by match to protein family HMM PF03848; match to protein family HMM PF05724; thiopurine S-methyltransferase (tpmt) superfamily protein complement(3114301..3114978) Mycobacterium smegmatis str. MC2 155 4532044 YP_887358.1 CDS MSMEG_3042 NC_008596.1 3115075 3115632 D regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 3115075..3115632 Mycobacterium smegmatis str. MC2 155 4535176 YP_887359.1 CDS pyrB NC_008596.1 3115629 3116585 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 3115629..3116585 Mycobacterium smegmatis str. MC2 155 4536879 YP_887360.1 CDS pyrC NC_008596.1 3116582 3117916 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 3116582..3117916 Mycobacterium smegmatis str. MC2 155 4531036 YP_887361.1 CDS MSMEG_3045 NC_008596.1 3117913 3118413 D integral membrane protein 3117913..3118413 Mycobacterium smegmatis str. MC2 155 4537193 YP_887362.1 CDS carA NC_008596.1 3118410 3119558 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 3118410..3119558 Mycobacterium smegmatis str. MC2 155 4532131 YP_887363.1 CDS carB NC_008596.1 3119664 3123011 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 3119664..3123011 Mycobacterium smegmatis str. MC2 155 4536732 YP_887364.1 CDS pyrF NC_008596.1 3123008 3123838 D type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 3123008..3123838 Mycobacterium smegmatis str. MC2 155 4532520 YP_887365.1 CDS MSMEG_3049 NC_008596.1 3124455 3124661 R hypothetical protein complement(3124455..3124661) Mycobacterium smegmatis str. MC2 155 4530878 YP_887366.1 CDS MSMEG_3050 NC_008596.1 3124973 3125290 D integration host factor 3124973..3125290 Mycobacterium smegmatis str. MC2 155 4533904 YP_887367.1 CDS gmk NC_008596.1 3125301 3125903 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 3125301..3125903 Mycobacterium smegmatis str. MC2 155 4534268 YP_887368.1 CDS MSMEG_3052 NC_008596.1 3125908 3126033 R hypothetical protein complement(3125908..3126033) Mycobacterium smegmatis str. MC2 155 4533197 YP_887369.1 CDS rpoZ NC_008596.1 3126019 3126342 D Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and subunit alphas; DNA-directed RNA polymerase subunit omega 3126019..3126342 Mycobacterium smegmatis str. MC2 155 4534047 YP_887370.1 CDS coaBC NC_008596.1 3126361 3127605 D catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 3126361..3127605 Mycobacterium smegmatis str. MC2 155 4537705 YP_887371.1 CDS metK NC_008596.1 3127746 3128945 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3127746..3128945 Mycobacterium smegmatis str. MC2 155 4533088 YP_887372.1 CDS MSMEG_3056 NC_008596.1 3129093 3130088 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3129093..3130088 Mycobacterium smegmatis str. MC2 155 4531143 YP_887373.1 CDS MSMEG_3057 NC_008596.1 3130085 3130825 D identified by match to protein family HMM PF00528; metal ABC transporter permease 3130085..3130825 Mycobacterium smegmatis str. MC2 155 4536376 YP_887374.1 CDS MSMEG_3058 NC_008596.1 3130870 3131709 D identified by match to protein family HMM PF03180; lipoprotein, nlpa family protein 3130870..3131709 Mycobacterium smegmatis str. MC2 155 4531846 YP_887375.1 CDS MSMEG_3059 NC_008596.1 3131786 3132673 R identified by match to protein family HMM PF07859; esterase complement(3131786..3132673) Mycobacterium smegmatis str. MC2 155 4534350 YP_887376.1 CDS MSMEG_3060 NC_008596.1 3132768 3133439 D identified by match to protein family HMM PF07947; hypothetical protein 3132768..3133439 Mycobacterium smegmatis str. MC2 155 4533027 YP_887377.1 CDS priA NC_008596.1 3133436 3135436 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 3133436..3135436 Mycobacterium smegmatis str. MC2 155 4533505 YP_887378.1 CDS MSMEG_3062 NC_008596.1 3135497 3137305 D hypothetical protein 3135497..3137305 Mycobacterium smegmatis str. MC2 155 4536807 YP_887379.1 CDS MSMEG_3063 NC_008596.1 3137299 3137835 D identified by match to protein family HMM PF04011; LemA protein 3137299..3137835 Mycobacterium smegmatis str. MC2 155 4536761 YP_887380.1 CDS fmt NC_008596.1 3137866 3138804 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 3137866..3138804 Mycobacterium smegmatis str. MC2 155 4535023 YP_887381.1 CDS sun NC_008596.1 3138801 3140195 D identified by match to protein family HMM PF01029; match to protein family HMM PF01189; ribosomal RNA small subunit methyltransferase B 3138801..3140195 Mycobacterium smegmatis str. MC2 155 4535334 YP_887382.1 CDS rpe NC_008596.1 3140241 3140918 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 3140241..3140918 Mycobacterium smegmatis str. MC2 155 4535238 YP_887383.1 CDS ribD NC_008596.1 3140915 3141922 D identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD 3140915..3141922 Mycobacterium smegmatis str. MC2 155 4533639 YP_887384.1 CDS MSMEG_3068 NC_008596.1 3142059 3142244 D hypothetical protein 3142059..3142244 Mycobacterium smegmatis str. MC2 155 4535143 YP_887385.1 CDS MSMEG_3069 NC_008596.1 3142257 3143939 R identified by match to protein family HMM PF07690; aminoglycosides/tetracycline-transport integral membrane protein complement(3142257..3143939) Mycobacterium smegmatis str. MC2 155 4537584 YP_887386.1 CDS MSMEG_3070 NC_008596.1 3143957 3144667 R identified by match to protein family HMM PF07161; LprG protein complement(3143957..3144667) Mycobacterium smegmatis str. MC2 155 4534067 YP_887387.1 CDS ribE NC_008596.1 3144739 3145338 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 3144739..3145338 Mycobacterium smegmatis str. MC2 155 4533850 YP_887388.1 CDS MSMEG_3072 NC_008596.1 3145459 3146778 D bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein 3145459..3146778 Mycobacterium smegmatis str. MC2 155 4533671 YP_887389.1 CDS ribH NC_008596.1 3146775 3147251 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; subunit beta of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 3146775..3147251 Mycobacterium smegmatis str. MC2 155 4534188 YP_887390.1 CDS MSMEG_3074 NC_008596.1 3147248 3147721 D hypothetical protein 3147248..3147721 Mycobacterium smegmatis str. MC2 155 4535629 YP_887391.1 CDS MSMEG_3075 NC_008596.1 3147737 3148219 R identified by similarity to GB:AAK38651.1; match to protein family HMM PF00583; GNAT family acetyltransferase complement(3147737..3148219) Mycobacterium smegmatis str. MC2 155 4535859 YP_887392.1 CDS ggt NC_008596.1 3148216 3150126 R identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066; gamma-glutamyltransferase complement(3148216..3150126) Mycobacterium smegmatis str. MC2 155 4530995 YP_887393.1 CDS MSMEG_3077 NC_008596.1 3150120 3150308 R hypothetical protein complement(3150120..3150308) Mycobacterium smegmatis str. MC2 155 4534657 YP_887394.1 CDS uvrC NC_008596.1 3150228 3152348 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 3150228..3152348 Mycobacterium smegmatis str. MC2 155 4537665 YP_887395.1 CDS MSMEG_3079 NC_008596.1 3152446 3153321 D identified by match to protein family HMM PF03668; hypothetical protein 3152446..3153321 Mycobacterium smegmatis str. MC2 155 4533937 YP_887396.1 CDS MSMEG_3080 NC_008596.1 3153318 3154382 D identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826; hypothetical protein 3153318..3154382 Mycobacterium smegmatis str. MC2 155 4534677 YP_887397.1 CDS MSMEG_3081 NC_008596.1 3154391 3155356 D identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647; hypothetical protein 3154391..3155356 Mycobacterium smegmatis str. MC2 155 4536827 YP_887398.1 CDS MSMEG_3082 NC_008596.1 3155445 3155837 D SOUL heme-binding protein 3155445..3155837 Mycobacterium smegmatis str. MC2 155 4533436 YP_887399.1 CDS MSMEG_3083 NC_008596.1 3155827 3157173 D identified by match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01777; nucleoside-diphosphate sugar epimerase 3155827..3157173 Mycobacterium smegmatis str. MC2 155 4532426 YP_887400.1 CDS gap NC_008596.1 3157277 3158299 D identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase 3157277..3158299 Mycobacterium smegmatis str. MC2 155 4535975 YP_887401.1 CDS pgk NC_008596.1 3158305 3159531 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 3158305..3159531 Mycobacterium smegmatis str. MC2 155 4537204 YP_887402.1 CDS tpiA NC_008596.1 3159535 3160320 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 3159535..3160320 Mycobacterium smegmatis str. MC2 155 4536422 YP_887403.1 CDS secG NC_008596.1 3160365 3160601 D identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 3160365..3160601 Mycobacterium smegmatis str. MC2 155 4533634 YP_887404.1 CDS deoC NC_008596.1 3161830 3162525 R catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase complement(3161830..3162525) Mycobacterium smegmatis str. MC2 155 4537371 YP_887405.1 CDS MSMEG_3090 NC_008596.1 3162550 3163551 R identified by match to protein family HMM PF02653; ribose transporter permease RbsC complement(3162550..3163551) Mycobacterium smegmatis str. MC2 155 4535401 YP_887406.1 CDS MSMEG_3091 NC_008596.1 3163544 3165091 R identified by match to protein family HMM PF00005; ribose transport ATP-binding protein RbsA complement(3163544..3165091) Mycobacterium smegmatis str. MC2 155 4532583 YP_887407.1 CDS MSMEG_3092 NC_008596.1 3165093 3166037 R identified by match to protein family HMM PF04198; transcriptional regulator, sugar-binding family protein complement(3165093..3166037) Mycobacterium smegmatis str. MC2 155 4536053 YP_887408.1 CDS MSMEG_3093 NC_008596.1 3166037 3167596 R identified by match to protein family HMM PF00370; match to protein family HMM PF02782; sugar kinase complement(3166037..3167596) Mycobacterium smegmatis str. MC2 155 4532455 YP_887409.1 CDS MSMEG_3094 NC_008596.1 3167600 3168691 R identified by match to protein family HMM PF00107; oxidoreductase, zinc-binding dehydrogenase complement(3167600..3168691) Mycobacterium smegmatis str. MC2 155 4536427 YP_887410.1 CDS MSMEG_3096 NC_008596.1 3168630 3168773 D hypothetical protein 3168630..3168773 Mycobacterium smegmatis str. MC2 155 4531032 YP_887411.1 CDS MSMEG_3095 NC_008596.1 3168749 3169684 R identified by match to protein family HMM PF00532; D-ribose-binding periplasmic protein complement(3168749..3169684) Mycobacterium smegmatis str. MC2 155 4536898 YP_887412.1 CDS ppc NC_008596.1 3169942 3172743 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 3169942..3172743 Mycobacterium smegmatis str. MC2 155 4535253 YP_887413.1 CDS MSMEG_3098 NC_008596.1 3172746 3173117 R hypothetical protein complement(3172746..3173117) Mycobacterium smegmatis str. MC2 155 4531958 YP_887414.1 CDS pgl NC_008596.1 3173171 3173905 R identified by match to protein family HMM PF01182; match to protein family HMM TIGR01198; 6-phosphogluconolactonase complement(3173171..3173905) Mycobacterium smegmatis str. MC2 155 4531901 YP_887415.1 CDS opcA NC_008596.1 3173902 3174813 R identified by match to protein family HMM TIGR00534; OpcA protein complement(3173902..3174813) Mycobacterium smegmatis str. MC2 155 4533065 YP_887416.1 CDS zwf NC_008596.1 3174830 3176380 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(3174830..3176380) Mycobacterium smegmatis str. MC2 155 4535456 YP_887417.1 CDS tal NC_008596.1 3176377 3177492 R catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; transaldolase complement(3176377..3177492) Mycobacterium smegmatis str. MC2 155 4532494 YP_887418.1 CDS tkt NC_008596.1 3177527 3179617 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(3177527..3179617) Mycobacterium smegmatis str. MC2 155 4531163 YP_887419.1 CDS MSMEG_3104 NC_008596.1 3179681 3179839 D hypothetical protein 3179681..3179839 Mycobacterium smegmatis str. MC2 155 4536544 YP_887420.1 CDS cyoE NC_008596.1 3179862 3180788 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 3179862..3180788 Mycobacterium smegmatis str. MC2 155 4537239 YP_887421.1 CDS MSMEG_3106 NC_008596.1 3180841 3181869 R identified by match to protein family HMM PF00107; quinone oxidoreductase complement(3180841..3181869) Mycobacterium smegmatis str. MC2 155 4534408 YP_887422.1 CDS MSMEG_3107 NC_008596.1 3181861 3182799 D hypothetical protein 3181861..3182799 Mycobacterium smegmatis str. MC2 155 4532362 YP_887423.1 CDS MSMEG_3108 NC_008596.1 3182812 3183879 R identified by match to protein family HMM PF00005; ABC transporter ATPase complement(3182812..3183879) Mycobacterium smegmatis str. MC2 155 4536959 YP_887424.1 CDS MSMEG_3109 NC_008596.1 3183900 3184715 R identified by match to protein family HMM PF00528; binding-protein-dependent transporters inner membrane component complement(3183900..3184715) Mycobacterium smegmatis str. MC2 155 4531606 YP_887425.1 CDS MSMEG_3110 NC_008596.1 3184712 3185575 R identified by match to protein family HMM PF00528; binding-protein-dependent transporters inner membrane component complement(3184712..3185575) Mycobacterium smegmatis str. MC2 155 4531323 YP_887426.1 CDS MSMEG_3111 NC_008596.1 3185616 3186944 R identified by match to protein family HMM PF01547; extracellular solute-binding protein complement(3185616..3186944) Mycobacterium smegmatis str. MC2 155 4531446 YP_887427.1 CDS MSMEG_3112 NC_008596.1 3187000 3187794 R identified by match to protein family HMM PF00106; estradiol 17-beta-dehydrogenase 8 complement(3187000..3187794) Mycobacterium smegmatis str. MC2 155 4536028 YP_887428.1 CDS MSMEG_3113 NC_008596.1 3187791 3189278 R identified by match to protein family HMM PF00370; match to protein family HMM PF02782; carbohydrate kinase complement(3187791..3189278) Mycobacterium smegmatis str. MC2 155 4535543 YP_887429.1 CDS MSMEG_3114 NC_008596.1 3189456 3190271 D identified by match to protein family HMM PF03437; match to protein family HMM TIGR00259; hypothetical protein 3189456..3190271 Mycobacterium smegmatis str. MC2 155 4536273 YP_887430.1 CDS MSMEG_3116 NC_008596.1 3190268 3191017 D identified by match to protein family HMM PF00459; inositol-1-monophosphatase 3190268..3191017 Mycobacterium smegmatis str. MC2 155 4534003 YP_887431.1 CDS MSMEG_3115 NC_008596.1 3191000 3191818 R identified by match to protein family HMM PF00455; match to protein family HMM PF08220; regulatory protein, DeoR complement(3191000..3191818) Mycobacterium smegmatis str. MC2 155 4533942 YP_887432.1 CDS MSMEG_3117 NC_008596.1 3191877 3192839 R identified by match to protein family HMM PF02628; cytochrome aa3 controlling protein complement(3191877..3192839) Mycobacterium smegmatis str. MC2 155 4530896 YP_887433.1 CDS MSMEG_3118 NC_008596.1 3192884 3193669 R identified by match to protein family HMM PF01061; match to protein family HMM TIGR00025; ABC transporter complement(3192884..3193669) Mycobacterium smegmatis str. MC2 155 4533806 YP_887434.1 CDS MSMEG_3119 NC_008596.1 3193666 3194634 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(3193666..3194634) Mycobacterium smegmatis str. MC2 155 4533636 YP_887435.1 CDS MSMEG_3120 NC_008596.1 3194631 3196310 R hypothetical protein complement(3194631..3196310) Mycobacterium smegmatis str. MC2 155 4536373 YP_887436.1 CDS MSMEG_3121 NC_008596.1 3196382 3197227 D identified by match to protein family HMM PF01022; DNA-binding protein 3196382..3197227 Mycobacterium smegmatis str. MC2 155 4536080 YP_887437.1 CDS sufB NC_008596.1 3197224 3198657 D identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980; FeS assembly protein SufB 3197224..3198657 Mycobacterium smegmatis str. MC2 155 4533734 YP_887438.1 CDS sufD NC_008596.1 3198660 3199871 D identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981; FeS assembly protein SufD 3198660..3199871 Mycobacterium smegmatis str. MC2 155 4535156 YP_887439.1 CDS sufC NC_008596.1 3199871 3200644 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978; FeS assembly ATPase SufC 3199871..3200644 Mycobacterium smegmatis str. MC2 155 4537106 YP_887440.1 CDS MSMEG_3125 NC_008596.1 3200647 3201891 D identified by match to protein family HMM PF00266; match to protein family HMM TIGR01979; cysteine desulfurase 3200647..3201891 Mycobacterium smegmatis str. MC2 155 4536130 YP_887441.1 CDS MSMEG_3126 NC_008596.1 3201888 3202382 D identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994; SUF system FeS assembly protein, NifU family protein 3201888..3202382 Mycobacterium smegmatis str. MC2 155 4532521 YP_887442.1 CDS MSMEG_3127 NC_008596.1 3202379 3202720 D identified by match to protein family HMM PF01883; hypothetical protein 3202379..3202720 Mycobacterium smegmatis str. MC2 155 4533298 YP_887443.1 CDS MSMEG_3128 NC_008596.1 3202721 3203860 R hypothetical protein complement(3202721..3203860) Mycobacterium smegmatis str. MC2 155 4534302 YP_887444.1 CDS MSMEG_3129 NC_008596.1 3203857 3204447 R identified by match to protein family HMM PF00440; HTH-type transcriptional regulator complement(3203857..3204447) Mycobacterium smegmatis str. MC2 155 4534131 YP_887445.1 CDS MSMEG_3130 NC_008596.1 3204495 3204944 R hypothetical protein complement(3204495..3204944) Mycobacterium smegmatis str. MC2 155 4532225 YP_887446.1 CDS MSMEG_3131 NC_008596.1 3205123 3206757 R identified by match to protein family HMM PF00501; AMP-binding protein complement(3205123..3206757) Mycobacterium smegmatis str. MC2 155 4531502 YP_887447.1 CDS MSMEG_3132 NC_008596.1 3207089 3207892 D DNA-binding protein 3207089..3207892 Mycobacterium smegmatis str. MC2 155 4537418 YP_887448.1 CDS MSMEG_3134 NC_008596.1 3208009 3209274 D identified by match to protein family HMM PF00067; cytochrome P450 3208009..3209274 Mycobacterium smegmatis str. MC2 155 4535735 YP_887449.1 CDS MSMEG_3133 NC_008596.1 3209187 3209825 R hypothetical protein complement(3209187..3209825) Mycobacterium smegmatis str. MC2 155 4531268 YP_887450.1 CDS MSMEG_3135 NC_008596.1 3209352 3209747 D hypothetical protein 3209352..3209747 Mycobacterium smegmatis str. MC2 155 4535276 YP_887451.1 CDS MSMEG_3136 NC_008596.1 3209887 3210606 D heme peroxidase superfamily protein 3209887..3210606 Mycobacterium smegmatis str. MC2 155 4532269 YP_887452.1 CDS MSMEG_3137 NC_008596.1 3210665 3211774 D identified by match to protein family HMM PF00724; oxidoreductase 3210665..3211774 Mycobacterium smegmatis str. MC2 155 4536842 YP_887453.1 CDS trx NC_008596.1 3211820 3212194 D identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 3211820..3212194 Mycobacterium smegmatis str. MC2 155 4534156 YP_887454.1 CDS MSMEG_3139 NC_008596.1 3212249 3213070 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 3212249..3213070 Mycobacterium smegmatis str. MC2 155 4533853 YP_887455.1 CDS MSMEG_3140 NC_008596.1 3213101 3214729 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3213101..3214729 Mycobacterium smegmatis str. MC2 155 4535404 YP_887456.1 CDS MSMEG_3141 NC_008596.1 3214859 3215056 D hypothetical protein 3214859..3215056 Mycobacterium smegmatis str. MC2 155 4534758 YP_887457.1 CDS MSMEG_3142 NC_008596.1 3215094 3215708 R identified by match to protein family HMM PF00440; HTH-type transcriptional repressor AcnR complement(3215094..3215708) Mycobacterium smegmatis str. MC2 155 4534565 YP_887458.1 CDS acnA NC_008596.1 3215760 3218591 R identified by match to protein family HMM PF00330; match to protein family HMM PF00694; match to protein family HMM TIGR01341; aconitate hydratase 1 complement(3215760..3218591) Mycobacterium smegmatis str. MC2 155 4536477 YP_887459.1 CDS MSMEG_3144 NC_008596.1 3218854 3219456 D hypothetical protein 3218854..3219456 Mycobacterium smegmatis str. MC2 155 4536964 YP_887460.1 CDS MSMEG_3145 NC_008596.1 3219661 3221154 D identified by match to protein family HMM PF00877; secreted cell wall-associated hydrolase 3219661..3221154 Mycobacterium smegmatis str. MC2 155 4535215 YP_887461.1 CDS MSMEG_3146 NC_008596.1 3221174 3221863 D identified by match to protein family HMM PF00877; invasin 1 3221174..3221863 Mycobacterium smegmatis str. MC2 155 4535059 YP_887462.1 CDS moxR NC_008596.1 3222173 3223219 D identified by match to protein family HMM PF07726; match to protein family HMM PF07728; ATPase, MoxR family protein 3222173..3223219 Mycobacterium smegmatis str. MC2 155 4533120 YP_887463.1 CDS MSMEG_3148 NC_008596.1 3223216 3224163 D hypothetical protein 3223216..3224163 Mycobacterium smegmatis str. MC2 155 4534929 YP_887464.1 CDS MSMEG_3149 NC_008596.1 3224240 3225223 D identified by match to protein family HMM PF00092; hypothetical protein 3224240..3225223 Mycobacterium smegmatis str. MC2 155 4535034 YP_887465.1 CDS fabG NC_008596.1 3225346 3226113 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM TIGR01830; 3-oxoacyl-ACP reductase 3225346..3226113 Mycobacterium smegmatis str. MC2 155 4534094 YP_887466.1 CDS MSMEG_3151 NC_008596.1 3226161 3226970 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 3226161..3226970 Mycobacterium smegmatis str. MC2 155 4537137 YP_887467.1 CDS hemH NC_008596.1 3226977 3227999 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 3226977..3227999 Mycobacterium smegmatis str. MC2 155 4533234 YP_887468.1 CDS MSMEG_3153 NC_008596.1 3228033 3228908 R hypothetical protein complement(3228033..3228908) Mycobacterium smegmatis str. MC2 155 4531748 YP_887469.1 CDS MSMEG_3154 NC_008596.1 3228967 3229401 D identified by match to protein family HMM PF01957; membrane protease regulatory membrane protein 3228967..3229401 Mycobacterium smegmatis str. MC2 155 4532817 YP_887470.1 CDS MSMEG_3155 NC_008596.1 3229445 3230671 D identified by match to protein family HMM PF01145; hypothetical protein 3229445..3230671 Mycobacterium smegmatis str. MC2 155 4536020 YP_887471.1 CDS MSMEG_3156 NC_008596.1 3230729 3231052 D hypothetical protein 3230729..3231052 Mycobacterium smegmatis str. MC2 155 4532593 YP_887472.1 CDS MSMEG_3157 NC_008596.1 3231067 3231804 R hypothetical protein complement(3231067..3231804) Mycobacterium smegmatis str. MC2 155 4532182 YP_887473.1 CDS mutA NC_008596.1 3231961 3233832 D identified by match to protein family HMM PF01642; match to protein family HMM TIGR00642; methylmalonyl-CoA mutase, small subunit 3231961..3233832 Mycobacterium smegmatis str. MC2 155 4533410 YP_887474.1 CDS MSMEG_3159 NC_008596.1 3233834 3236089 D MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase 3233834..3236089 Mycobacterium smegmatis str. MC2 155 4536666 YP_887475.1 CDS MSMEG_3160 NC_008596.1 3236097 3237074 D functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transporters, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins; arginine/ornithine transporter ATPase 3236097..3237074 Mycobacterium smegmatis str. MC2 155 4536541 YP_887476.1 CDS MSMEG_3161 NC_008596.1 3237127 3237477 D hypothetical protein 3237127..3237477 Mycobacterium smegmatis str. MC2 155 4534296 YP_887477.1 CDS MSMEG_3162 NC_008596.1 3237553 3238818 D identified by match to protein family HMM PF00144; beta-lactamase 3237553..3238818 Mycobacterium smegmatis str. MC2 155 4532845 YP_887478.1 CDS MSMEG_3163 NC_008596.1 3238864 3239595 R gp55 protein complement(3238864..3239595) Mycobacterium smegmatis str. MC2 155 4535555 YP_887479.1 CDS MSMEG_3164 NC_008596.1 3239637 3239999 R hypothetical protein complement(3239637..3239999) Mycobacterium smegmatis str. MC2 155 4532206 YP_887480.1 CDS MSMEG_3165 NC_008596.1 3240241 3240942 D identified by similarity to GP:150004; match to protein family HMM PF07929; IS1096, tnpR protein 3240241..3240942 Mycobacterium smegmatis str. MC2 155 4531931 YP_887481.1 CDS MSMEG_3166 NC_008596.1 3240950 3242272 R identified by similarity to GP:150005; match to protein family HMM PF01610; IS1096, tnpA protein complement(3240950..3242272) Mycobacterium smegmatis str. MC2 155 4535031 YP_887482.1 CDS MSMEG_3167 NC_008596.1 3241991 3242389 D hypothetical protein 3241991..3242389 Mycobacterium smegmatis str. MC2 155 4532840 YP_887483.1 CDS MSMEG_3168 NC_008596.1 3242433 3242996 D phenolpthiocerol synthesis type-i polyketide synthase ppse 3242433..3242996 Mycobacterium smegmatis str. MC2 155 4534881 YP_887484.1 CDS ileS NC_008596.1 3243269 3246391 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 3243269..3246391 Mycobacterium smegmatis str. MC2 155 4531287 YP_887485.1 CDS MSMEG_3170 NC_008596.1 3246446 3246664 R identified by match to protein family HMM PF01479; hypothetical protein complement(3246446..3246664) Mycobacterium smegmatis str. MC2 155 4535498 YP_887486.1 CDS MSMEG_3172 NC_008596.1 3246698 3248089 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 3246698..3248089 Mycobacterium smegmatis str. MC2 155 4531988 YP_887487.1 CDS MSMEG_3171 NC_008596.1 3248071 3248559 R hypothetical protein complement(3248071..3248559) Mycobacterium smegmatis str. MC2 155 4535723 YP_887488.1 CDS MSMEG_3173 NC_008596.1 3248591 3249553 R identified by match to protein family HMM PF00710; L-asparaginase complement(3248591..3249553) Mycobacterium smegmatis str. MC2 155 4530849 YP_887489.1 CDS lspA NC_008596.1 3249596 3250303 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 3249596..3250303 Mycobacterium smegmatis str. MC2 155 4532001 YP_887490.1 CDS MSMEG_3175 NC_008596.1 3250303 3251232 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase D 3250303..3251232 Mycobacterium smegmatis str. MC2 155 4535110 YP_887491.1 CDS rarD NC_008596.1 3251229 3252143 D identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688; RarD protein 3251229..3252143 Mycobacterium smegmatis str. MC2 155 4531861 YP_887492.1 CDS MSMEG_3177 NC_008596.1 3252280 3252924 D identified by match to protein family HMM PF00440; transcriptional regulatory protein 3252280..3252924 Mycobacterium smegmatis str. MC2 155 4533114 YP_887493.1 CDS dnaE NC_008596.1 3253007 3256561 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 3253007..3256561 Mycobacterium smegmatis str. MC2 155 4532730 YP_887494.1 CDS MSMEG_3179 NC_008596.1 3256584 3257036 R identified by match to protein family HMM PF01243; pyridoxamine 5'-phosphate oxidase complement(3256584..3257036) Mycobacterium smegmatis str. MC2 155 4533900 YP_887495.1 CDS MSMEG_3180 NC_008596.1 3257094 3257483 D identified by match to protein family HMM PF00376; MerR family transcriptional regulator 3257094..3257483 Mycobacterium smegmatis str. MC2 155 4537611 YP_887496.1 CDS MSMEG_3181 NC_008596.1 3257504 3257905 D hypothetical protein 3257504..3257905 Mycobacterium smegmatis str. MC2 155 4530848 YP_887497.1 CDS MSMEG_3182 NC_008596.1 3257923 3258243 D hypothetical protein 3257923..3258243 Mycobacterium smegmatis str. MC2 155 4534250 YP_887498.1 CDS ilvA NC_008596.1 3258382 3259674 D catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic; threonine dehydratase 3258382..3259674 Mycobacterium smegmatis str. MC2 155 4532654 YP_887499.1 CDS treZ NC_008596.1 3259770 3261521 R identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402; malto-oligosyltrehalose trehalohydrolase complement(3259770..3261521) Mycobacterium smegmatis str. MC2 155 4536822 YP_887500.1 CDS glgX NC_008596.1 3263798 3265954 R identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100; glycogen debranching protein GlgX complement(3263798..3265954) Mycobacterium smegmatis str. MC2 155 4534361 YP_887501.1 CDS MSMEG_3187 NC_008596.1 3265959 3268118 R identified by match to protein family HMM PF01757; acyltransferase domain-containing protein complement(3265959..3268118) Mycobacterium smegmatis str. MC2 155 4532189 YP_887502.1 CDS bioA NC_008596.1 3268212 3269510 D catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 3268212..3269510 Mycobacterium smegmatis str. MC2 155 4533610 YP_887503.1 CDS bioF NC_008596.1 3269639 3270787 D catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 3269639..3270787 Mycobacterium smegmatis str. MC2 155 4537143 YP_887504.1 CDS bioD NC_008596.1 3270784 3271461 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 3270784..3271461 Mycobacterium smegmatis str. MC2 155 4536726 YP_887505.1 CDS MSMEG_3191 NC_008596.1 3271486 3271995 D hypothetical protein 3271486..3271995 Mycobacterium smegmatis str. MC2 155 4536338 YP_887506.1 CDS MSMEG_3192 NC_008596.1 3272008 3272769 D identified by match to protein family HMM TIGR03083; hypothetical protein 3272008..3272769 Mycobacterium smegmatis str. MC2 155 4537471 YP_887507.1 CDS MSMEG_3193 NC_008596.1 3272770 3273387 R identified by match to protein family HMM PF00440; match to protein family HMM PF02909; TetR family transcriptional regulator complement(3272770..3273387) Mycobacterium smegmatis str. MC2 155 4536327 YP_887508.1 CDS bioB NC_008596.1 3273453 3274514 D catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine; biotin synthase 3273453..3274514 Mycobacterium smegmatis str. MC2 155 4534990 YP_887509.1 CDS MSMEG_3195 NC_008596.1 3274521 3274763 D hypothetical protein 3274521..3274763 Mycobacterium smegmatis str. MC2 155 4532522 YP_887510.1 CDS MSMEG_3196 NC_008596.1 3274778 3275455 D hypothetical protein 3274778..3275455 Mycobacterium smegmatis str. MC2 155 4533047 YP_887511.1 CDS MSMEG_3197 NC_008596.1 3275485 3276816 R identified by match to protein family HMM PF03583; lipase complement(3275485..3276816) Mycobacterium smegmatis str. MC2 155 4536957 YP_887512.1 CDS MSMEG_3198 NC_008596.1 3276859 3277524 R identified by match to protein family HMM PF00293; NUDIX family hydrolase complement(3276859..3277524) Mycobacterium smegmatis str. MC2 155 4537240 YP_887513.1 CDS nadA NC_008596.1 3277598 3278641 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 3277598..3278641 Mycobacterium smegmatis str. MC2 155 4533075 YP_887514.1 CDS nadB NC_008596.1 3278638 3280233 D catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 3278638..3280233 Mycobacterium smegmatis str. MC2 155 4531293 YP_887515.1 CDS nadC NC_008596.1 3280227 3281093 D catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase 3280227..3281093 Mycobacterium smegmatis str. MC2 155 4534743 YP_887516.1 CDS MSMEG_3202 NC_008596.1 3281139 3282659 R hypothetical protein complement(3281139..3282659) Mycobacterium smegmatis str. MC2 155 4536014 YP_887517.1 CDS MSMEG_3203 NC_008596.1 3283047 3283682 R identified by match to protein family HMM PF01810; transporter LysE family protein complement(3283047..3283682) Mycobacterium smegmatis str. MC2 155 4531079 YP_887518.1 CDS MSMEG_3204 NC_008596.1 3283704 3284072 R identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026; hypothetical protein complement(3283704..3284072) Mycobacterium smegmatis str. MC2 155 4535940 YP_887519.1 CDS hisD NC_008596.1 3284200 3285537 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 3284200..3285537 Mycobacterium smegmatis str. MC2 155 4536304 YP_887520.1 CDS hisC NC_008596.1 3285537 3286676 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 3285537..3286676 Mycobacterium smegmatis str. MC2 155 4534312 YP_887521.1 CDS hisB NC_008596.1 3286673 3287293 D catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 3286673..3287293 Mycobacterium smegmatis str. MC2 155 4535558 YP_887522.1 CDS hisH NC_008596.1 3287290 3287907 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 3287290..3287907 Mycobacterium smegmatis str. MC2 155 4535914 YP_887523.1 CDS MSMEG_3209 NC_008596.1 3287922 3288698 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide and the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)anthranilate; involved in histidine and tryptophan biosynthesis; phosphoribosyl isomerase A 3287922..3288698 Mycobacterium smegmatis str. MC2 155 4531646 YP_887524.1 CDS MSMEG_3210 NC_008596.1 3288695 3289525 D identified by match to protein family HMM PF00459; inositol monophosphate phosphatase 3288695..3289525 Mycobacterium smegmatis str. MC2 155 4536027 YP_887525.1 CDS hisF NC_008596.1 3289522 3290307 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 3289522..3290307 Mycobacterium smegmatis str. MC2 155 4533985 YP_887526.1 CDS hisI NC_008596.1 3290318 3290665 D PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 3290318..3290665 Mycobacterium smegmatis str. MC2 155 4534041 YP_887527.1 CDS MSMEG_3213 NC_008596.1 3290670 3292352 D hypothetical protein 3290670..3292352 Mycobacterium smegmatis str. MC2 155 4533760 YP_887528.1 CDS MSMEG_3214 NC_008596.1 3292342 3293334 D hypothetical protein 3292342..3293334 Mycobacterium smegmatis str. MC2 155 4534203 YP_887529.1 CDS MSMEG_3215 NC_008596.1 3293342 3294139 R identified by match to protein family HMM PF00005; molybdenum ABC transporter ATPase complement(3293342..3294139) Mycobacterium smegmatis str. MC2 155 4533830 YP_887530.1 CDS MSMEG_3216 NC_008596.1 3294257 3294721 R identified by match to protein family HMM PF00578; peroxiredoxin Q complement(3294257..3294721) Mycobacterium smegmatis str. MC2 155 4532145 YP_887531.1 CDS trpE NC_008596.1 3294784 3296358 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 3294784..3296358 Mycobacterium smegmatis str. MC2 155 4531670 YP_887532.1 CDS MSMEG_3218 NC_008596.1 3296355 3296969 D identified by match to protein family HMM TIGR02234; hypothetical protein 3296355..3296969 Mycobacterium smegmatis str. MC2 155 4533794 YP_887533.1 CDS trpC NC_008596.1 3297046 3297864 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 3297046..3297864 Mycobacterium smegmatis str. MC2 155 4535694 YP_887534.1 CDS trpB NC_008596.1 3297900 3299177 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 3297900..3299177 Mycobacterium smegmatis str. MC2 155 4531122 YP_887535.1 CDS trpA NC_008596.1 3299174 3299962 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 3299174..3299962 Mycobacterium smegmatis str. MC2 155 4535098 YP_887536.1 CDS MSMEG_3222 NC_008596.1 3299959 3301809 D identified by match to protein family HMM PF01790; match to protein family HMM TIGR00544; prolipoprotein diacylglyceryl transferase 3299959..3301809 Mycobacterium smegmatis str. MC2 155 4531363 YP_887537.1 CDS MSMEG_3223 NC_008596.1 3301936 3302223 D identified by match to protein family HMM PF05154; TM2 domain-containing protein 3301936..3302223 Mycobacterium smegmatis str. MC2 155 4531852 YP_887538.1 CDS MSMEG_3224 NC_008596.1 3302213 3302626 D hypothetical protein 3302213..3302626 Mycobacterium smegmatis str. MC2 155 4534772 YP_887539.1 CDS MSMEG_3225 NC_008596.1 3302712 3307268 D identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898; ferredoxin-dependent glutamate synthase 1 3302712..3307268 Mycobacterium smegmatis str. MC2 155 4532649 YP_887540.1 CDS MSMEG_3226 NC_008596.1 3307261 3308763 D identified by match to protein family HMM PF01266; match to protein family HMM PF07992; match to protein family HMM TIGR01317; glutamate synthase NADH/NADPH small subunit 3307261..3308763 Mycobacterium smegmatis str. MC2 155 4535888 YP_887541.1 CDS pyk NC_008596.1 3308803 3310221 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 3308803..3310221 Mycobacterium smegmatis str. MC2 155 4534311 YP_887542.1 CDS MSMEG_3228 NC_008596.1 3310245 3311108 D identified by match to protein family HMM PF02551; acyl-CoA thioesterase 3310245..3311108 Mycobacterium smegmatis str. MC2 155 4534389 YP_887543.1 CDS MSMEG_3229 NC_008596.1 3311187 3311981 R hypothetical protein complement(3311187..3311981) Mycobacterium smegmatis str. MC2 155 4537410 YP_887544.1 CDS cydD NC_008596.1 3313470 3314999 R identified by match to protein family HMM PF00005; match to protein family HMM TIGR02857; cysteine ABC transporter permease/ATP-binding protein complement(3313470..3314999) Mycobacterium smegmatis str. MC2 155 4536555 YP_887545.1 CDS cydB NC_008596.1 3315095 3316147 R identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome D ubiquinol oxidase subunit II complement(3315095..3316147) Mycobacterium smegmatis str. MC2 155 4533165 YP_887546.1 CDS MSMEG_3233 NC_008596.1 3316161 3317624 R identified by match to protein family HMM PF01654; cytochrome D ubiquinol oxidase subunit 1 complement(3316161..3317624) Mycobacterium smegmatis str. MC2 155 4536091 YP_887547.1 CDS MSMEG_3234 NC_008596.1 3317720 3318295 R identified by match to protein family HMM PF03729; integral membrane protein complement(3317720..3318295) Mycobacterium smegmatis str. MC2 155 4532339 YP_887548.1 CDS MSMEG_3235 NC_008596.1 3318528 3319415 D identified by match to protein family HMM PF00497; amino acid ABC transporter 3318528..3319415 Mycobacterium smegmatis str. MC2 155 4537236 YP_887549.1 CDS MSMEG_3236 NC_008596.1 3319425 3320357 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease 3319425..3320357 Mycobacterium smegmatis str. MC2 155 4533679 YP_887550.1 CDS MSMEG_3237 NC_008596.1 3320354 3321139 D identified by match to protein family HMM PF00005; ATP-binding protein 3320354..3321139 Mycobacterium smegmatis str. MC2 155 4533703 YP_887551.1 CDS MSMEG_3238 NC_008596.1 3321162 3322022 D identified by match to protein family HMM PF00581; 3-mercaptopyruvate sulfurtransferase 3321162..3322022 Mycobacterium smegmatis str. MC2 155 4536482 YP_887552.1 CDS MSMEG_3239 NC_008596.1 3322077 3323213 D identified by match to protein family HMM PF02518; two-component system sensor kinase 3322077..3323213 Mycobacterium smegmatis str. MC2 155 4532642 YP_887553.1 CDS MSMEG_3240 NC_008596.1 3323210 3323869 D identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family transcriptional regulator 3323210..3323869 Mycobacterium smegmatis str. MC2 155 4532405 YP_887554.1 CDS MSMEG_3241 NC_008596.1 3323913 3325754 D hypothetical protein 3323913..3325754 Mycobacterium smegmatis str. MC2 155 4533713 YP_887555.1 CDS MSMEG_3242 NC_008596.1 3325818 3326303 D identified by match to protein family HMM PF00210; starvation-inducible DNA-binding protein or fine tangled pili major subunit 3325818..3326303 Mycobacterium smegmatis str. MC2 155 4534996 YP_887556.1 CDS MSMEG_3244 NC_008596.1 3327095 3328519 D hypothetical protein 3327095..3328519 Mycobacterium smegmatis str. MC2 155 4535315 YP_887557.1 CDS MSMEG_3246 NC_008596.1 3328852 3329478 D identified by match to protein family HMM PF00072; match to protein family HMM PF03861; response regulator 3328852..3329478 Mycobacterium smegmatis str. MC2 155 4532842 YP_887558.1 CDS MSMEG_3247 NC_008596.1 3329756 3330919 D identified by match to protein family HMM PF01094; branched-chain amino acid ABC transporter substrate-binding protein 3329756..3330919 Mycobacterium smegmatis str. MC2 155 4531507 YP_887559.1 CDS MSMEG_3248 NC_008596.1 3330998 3332035 D identified by match to protein family HMM PF02653; branched-chain amino acid ABC transporter permease 3330998..3332035 Mycobacterium smegmatis str. MC2 155 4533940 YP_887560.1 CDS MSMEG_3249 NC_008596.1 3332032 3333246 D identified by match to protein family HMM PF02653; branched-chain amino acid ABC transporter permease 3332032..3333246 Mycobacterium smegmatis str. MC2 155 4537161 YP_887561.1 CDS MSMEG_3250 NC_008596.1 3333243 3334097 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3333243..3334097 Mycobacterium smegmatis str. MC2 155 4533149 YP_887562.1 CDS MSMEG_3251 NC_008596.1 3334081 3334827 D identified by match to protein family HMM PF00005; branched-chain amino acid ABC transporter ATP-binding protein 3334081..3334827 Mycobacterium smegmatis str. MC2 155 4533465 YP_887563.1 CDS MSMEG_3252 NC_008596.1 3334948 3335274 D identified by match to protein family HMM PF02694; hypothetical protein 3334948..3335274 Mycobacterium smegmatis str. MC2 155 4535668 YP_887564.1 CDS MSMEG_3253 NC_008596.1 3335279 3336166 R hypothetical protein complement(3335279..3336166) Mycobacterium smegmatis str. MC2 155 4532014 YP_887565.1 CDS MSMEG_3254 NC_008596.1 3336282 3336767 R identified by match to protein family HMM PF06271; RDD family protein complement(3336282..3336767) Mycobacterium smegmatis str. MC2 155 4535461 YP_887566.1 CDS MSMEG_3255 NC_008596.1 3336777 3337652 R identified by match to protein family HMM PF07681; DoxX subfamily protein complement(3336777..3337652) Mycobacterium smegmatis str. MC2 155 4532442 YP_887567.1 CDS MSMEG_3256 NC_008596.1 3337685 3337909 D mucin-associated surface protein 3337685..3337909 Mycobacterium smegmatis str. MC2 155 4536167 YP_887568.1 CDS xylB NC_008596.1 3337958 3339346 D identified by similarity to SP:P09099; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312; xylulokinase 3337958..3339346 Mycobacterium smegmatis str. MC2 155 4537463 YP_887569.1 CDS MSMEG_3258 NC_008596.1 3339343 3339477 D hypothetical protein 3339343..3339477 Mycobacterium smegmatis str. MC2 155 4532655 YP_887570.1 CDS MSMEG_3259 NC_008596.1 3339524 3340744 D identified by match to protein family HMM PF08028; acyl-CoA dehydrogenase 3339524..3340744 Mycobacterium smegmatis str. MC2 155 4534240 YP_887571.1 CDS MSMEG_3260 NC_008596.1 3340787 3341722 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 3340787..3341722 Mycobacterium smegmatis str. MC2 155 4532539 YP_887572.1 CDS MSMEG_3261 NC_008596.1 3341757 3342605 D hypothetical protein 3341757..3342605 Mycobacterium smegmatis str. MC2 155 4536527 YP_887573.1 CDS MSMEG_3263 NC_008596.1 3342704 3344113 D identified by match to protein family HMM PF00370; match to protein family HMM PF02782; xylulose kinase 3342704..3344113 Mycobacterium smegmatis str. MC2 155 4533880 YP_887574.1 CDS MSMEG_3262 NC_008596.1 3344098 3344886 R identified by match to protein family HMM PF00106; L-xylulose reductase complement(3344098..3344886) Mycobacterium smegmatis str. MC2 155 4537516 YP_887575.1 CDS MSMEG_3264 NC_008596.1 3344883 3345905 R identified by match to protein family HMM PF04198; transcriptional regulator complement(3344883..3345905) Mycobacterium smegmatis str. MC2 155 4536251 YP_887576.1 CDS MSMEG_3265 NC_008596.1 3346024 3347112 D identified by match to protein family HMM PF00107; arabitol-phosphate dehydrogenase 3346024..3347112 Mycobacterium smegmatis str. MC2 155 4531989 YP_887577.1 CDS MSMEG_3266 NC_008596.1 3347124 3348557 D identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409; maltose/maltodextrin-binding protein 3347124..3348557 Mycobacterium smegmatis str. MC2 155 4533890 YP_887578.1 CDS MSMEG_3267 NC_008596.1 3348569 3349522 D identified by match to protein family HMM PF00528; transporter 3348569..3349522 Mycobacterium smegmatis str. MC2 155 4531601 YP_887579.1 CDS MSMEG_3268 NC_008596.1 3349525 3350397 D identified by match to protein family HMM PF00528; ABC transporter permease 3349525..3350397 Mycobacterium smegmatis str. MC2 155 4532508 YP_887580.1 CDS MSMEG_3269 NC_008596.1 3350397 3351506 D identified by match to protein family HMM PF00005; match to protein family HMM PF03459; sugar ABC transporter ATP-binding protein 3350397..3351506 Mycobacterium smegmatis str. MC2 155 4531610 YP_887581.1 CDS MSMEG_3270 NC_008596.1 3351503 3352636 D identified by match to protein family HMM PF00005; sn-glycerol-3-phosphate ABC transporter ATP-binding protein 3351503..3352636 Mycobacterium smegmatis str. MC2 155 4535073 YP_887582.1 CDS MSMEG_3271 NC_008596.1 3352633 3354375 D in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone; dihydroxyacetone kinase 3352633..3354375 Mycobacterium smegmatis str. MC2 155 4532785 YP_887583.1 CDS MSMEG_3272 NC_008596.1 3354375 3354836 D identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR02133; ribose 5-phosphate isomerase 3354375..3354836 Mycobacterium smegmatis str. MC2 155 4533423 YP_887584.1 CDS MSMEG_3273 NC_008596.1 3354888 3355973 D identified by match to protein family HMM PF01546; match to protein family HMM PF05343; glutamyl aminopeptidase, M42 family protein 3354888..3355973 Mycobacterium smegmatis str. MC2 155 4531576 YP_887585.1 CDS MSMEG_3274 NC_008596.1 3356052 3356885 D identified by match to protein family HMM PF00376; MerR family transcriptional regulator 3356052..3356885 Mycobacterium smegmatis str. MC2 155 4533185 YP_887586.1 CDS MSMEG_3275 NC_008596.1 3357384 3358010 D identified by match to protein family HMM TIGR02937; igma-70 family RNA polymerase sigma factor 3357384..3358010 Mycobacterium smegmatis str. MC2 155 4535227 YP_887587.1 CDS MSMEG_3276 NC_008596.1 3358295 3359179 D identified by match to protein family HMM PF00892; integral membrane protein 3358295..3359179 Mycobacterium smegmatis str. MC2 155 4531089 YP_887588.1 CDS MSMEG_3278 NC_008596.1 3359219 3359566 D hypothetical protein 3359219..3359566 Mycobacterium smegmatis str. MC2 155 4533726 YP_887589.1 CDS MSMEG_3277 NC_008596.1 3359563 3360411 R identified by match to protein family HMM PF00528; polyamine ABC transporter integral membrane protein complement(3359563..3360411) Mycobacterium smegmatis str. MC2 155 4535861 YP_887590.1 CDS MSMEG_3279 NC_008596.1 3360408 3361229 R identified by match to protein family HMM PF00528; polyamine ABC transporter permease complement(3360408..3361229) Mycobacterium smegmatis str. MC2 155 4535496 YP_887591.1 CDS MSMEG_3280 NC_008596.1 3361287 3362480 R identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409; polyamine-binding lipoprotein complement(3361287..3362480) Mycobacterium smegmatis str. MC2 155 4534303 YP_887592.1 CDS MSMEG_3281 NC_008596.1 3362546 3363814 R identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM TIGR01187; spermidine/putrescine ABC transporter ATP-binding protein complement(3362546..3363814) Mycobacterium smegmatis str. MC2 155 4536642 YP_887593.1 CDS MSMEG_3282 NC_008596.1 3363710 3363892 D hypothetical protein 3363710..3363892 Mycobacterium smegmatis str. MC2 155 4537491 YP_887594.1 CDS MSMEG_3283 NC_008596.1 3364011 3365477 R identified by match to protein family HMM PF07690; membrane transporter complement(3364011..3365477) Mycobacterium smegmatis str. MC2 155 4537363 YP_887595.1 CDS MSMEG_3284 NC_008596.1 3365617 3366036 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(3365617..3366036) Mycobacterium smegmatis str. MC2 155 4532891 YP_887596.1 CDS MSMEG_3285 NC_008596.1 3366127 3367197 R identified by match to protein family HMM PF00180; 3-isopropylmalate dehydrogenase complement(3366127..3367197) Mycobacterium smegmatis str. MC2 155 4536083 YP_887597.1 CDS MSMEG_3286 NC_008596.1 3367206 3367937 R methyltransferase complement(3367206..3367937) Mycobacterium smegmatis str. MC2 155 4535592 YP_887598.1 CDS MSMEG_3287 NC_008596.1 3367954 3368817 R identified by match to protein family HMM PF00561; alpha/beta hydrolase complement(3367954..3368817) Mycobacterium smegmatis str. MC2 155 4535309 YP_887599.1 CDS MSMEG_3288 NC_008596.1 3368990 3369637 D identified by match to protein family HMM PF01476; LysM domain-containing protein 3368990..3369637 Mycobacterium smegmatis str. MC2 155 4534438 YP_887600.1 CDS MSMEG_3289 NC_008596.1 3369713 3370798 D identified by match to protein family HMM PF00561; gp61 protein 3369713..3370798 Mycobacterium smegmatis str. MC2 155 4537601 YP_887601.1 CDS MSMEG_3290 NC_008596.1 3370884 3373658 D identified by match to protein family HMM PF00196; regulatory protein 3370884..3373658 Mycobacterium smegmatis str. MC2 155 4535485 YP_887602.1 CDS MSMEG_3291 NC_008596.1 3373908 3374081 R hypothetical protein complement(3373908..3374081) Mycobacterium smegmatis str. MC2 155 4531158 YP_887603.1 CDS MSMEG_3292 NC_008596.1 3374137 3374979 D DNA-binding protein 3374137..3374979 Mycobacterium smegmatis str. MC2 155 4535244 YP_887604.1 CDS MSMEG_3293 NC_008596.1 3375012 3375185 R hypothetical protein complement(3375012..3375185) Mycobacterium smegmatis str. MC2 155 4533435 YP_887605.1 CDS MSMEG_3294 NC_008596.1 3375207 3375320 D hypothetical protein 3375207..3375320 Mycobacterium smegmatis str. MC2 155 4533689 YP_887606.1 CDS MSMEG_3295 NC_008596.1 3375332 3375463 D hypothetical protein 3375332..3375463 Mycobacterium smegmatis str. MC2 155 4532186 YP_887607.1 CDS MSMEG_3296 NC_008596.1 3375472 3376029 D identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; ECF-family protein sigma factor H 3375472..3376029 Mycobacterium smegmatis str. MC2 155 4533139 YP_887608.1 CDS MSMEG_3297 NC_008596.1 3376204 3377424 D identified by match to protein family HMM PF00486; match to protein family HMM PF00561; CadC family transcriptional regulator 3376204..3377424 Mycobacterium smegmatis str. MC2 155 4531738 YP_887609.1 CDS MSMEG_3298 NC_008596.1 3377556 3378146 D identified by match to protein family HMM PF07080; response regulator receiver domain-containing protein 3377556..3378146 Mycobacterium smegmatis str. MC2 155 4537343 YP_887610.1 CDS MSMEG_3300 NC_008596.1 3379139 3380224 D identified by match to protein family HMM PF01408; oxidoreductase, Gfo/Idh/MocA family protein 3379139..3380224 Mycobacterium smegmatis str. MC2 155 4533292 YP_887611.1 CDS MSMEG_3301 NC_008596.1 3380231 3381091 D identified by match to protein family HMM PF00296; hypothetical protein 3380231..3381091 Mycobacterium smegmatis str. MC2 155 4536046 YP_887612.1 CDS MSMEG_3302 NC_008596.1 3381095 3381979 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short-chain dehydrogenase/reductase SDR 3381095..3381979 Mycobacterium smegmatis str. MC2 155 4534914 YP_887613.1 CDS MSMEG_3303 NC_008596.1 3382070 3383518 D identified by match to protein family HMM PF03403; carboxylic ester hydrolase 3382070..3383518 Mycobacterium smegmatis str. MC2 155 4537209 YP_887614.1 CDS MSMEG_3304 NC_008596.1 3383593 3384945 D identified by match to protein family HMM PF00171; succinate semialdehyde dehydrogenase 3383593..3384945 Mycobacterium smegmatis str. MC2 155 4533892 YP_887615.1 CDS MSMEG_3305 NC_008596.1 3384988 3385890 D identified by match to protein family HMM PF00892; hypothetical protein 3384988..3385890 Mycobacterium smegmatis str. MC2 155 4533054 YP_887616.1 CDS MSMEG_3306 NC_008596.1 3386138 3387082 D identified by match to protein family HMM PF00107; zinc-binding alcohol dehydrogenase 3386138..3387082 Mycobacterium smegmatis str. MC2 155 4530863 YP_887617.1 CDS MSMEG_3308 NC_008596.1 3388088 3388576 D identified by match to protein family HMM PF00582; universal stress protein family protein 3388088..3388576 Mycobacterium smegmatis str. MC2 155 4532382 YP_887618.1 CDS MSMEG_3309 NC_008596.1 3388626 3389927 D catalyzes the formation of L-tryptophan from indole and L-serine; tryptophan synthase subunit beta 3388626..3389927 Mycobacterium smegmatis str. MC2 155 4530892 YP_887619.1 CDS MSMEG_3310 NC_008596.1 3390024 3390854 D identified by match to protein family HMM PF06724; integral membrane protein 3390024..3390854 Mycobacterium smegmatis str. MC2 155 4536137 YP_887620.1 CDS MSMEG_3311 NC_008596.1 3390856 3391146 R acyl carrier protein complement(3390856..3391146) Mycobacterium smegmatis str. MC2 155 4537293 YP_887621.1 CDS MSMEG_3312 NC_008596.1 3391207 3391764 D identified by match to protein family HMM PF01814; hemerythrin HHE cation binding domain-containing protein 3391207..3391764 Mycobacterium smegmatis str. MC2 155 4532569 YP_887622.1 CDS MSMEG_3313 NC_008596.1 3391777 3392985 R identified by match to protein family HMM PF00480; xylose repressor complement(3391777..3392985) Mycobacterium smegmatis str. MC2 155 4533262 YP_887623.1 CDS MSMEG_3314 NC_008596.1 3393017 3394192 D identified by match to protein family HMM PF07690; transporter 3393017..3394192 Mycobacterium smegmatis str. MC2 155 4535844 YP_887624.1 CDS MSMEG_3315 NC_008596.1 3394195 3394488 R hypothetical protein complement(3394195..3394488) Mycobacterium smegmatis str. MC2 155 4535284 YP_887625.1 CDS dapB NC_008596.1 3394773 3395795 D identified by match to protein family HMM PF01113; match to protein family HMM PF01408; match to protein family HMM PF02629; dihydrodipicolinate reductase N-terminus domain-containing protein 3394773..3395795 Mycobacterium smegmatis str. MC2 155 4532473 YP_887626.1 CDS MSMEG_3316 NC_008596.1 3395749 3397227 R identified by match to protein family HMM PF07690; transporter major facilitator family protein complement(3395749..3397227) Mycobacterium smegmatis str. MC2 155 4537333 YP_887627.1 CDS MSMEG_3318 NC_008596.1 3397224 3398450 R identified by match to protein family HMM PF01494; oxidoreductase complement(3397224..3398450) Mycobacterium smegmatis str. MC2 155 4535627 YP_887628.1 CDS MSMEG_3319 NC_008596.1 3398604 3399185 D identified by match to protein family HMM PF00440; repressor protein 3398604..3399185 Mycobacterium smegmatis str. MC2 155 4537029 YP_887629.1 CDS MSMEG_3321 NC_008596.1 3400223 3402250 D ATP/GTP-binding protein 3400223..3402250 Mycobacterium smegmatis str. MC2 155 4535865 YP_887630.1 CDS MSMEG_3322 NC_008596.1 3402308 3403102 D hypothetical protein 3402308..3403102 Mycobacterium smegmatis str. MC2 155 4533742 YP_887631.1 CDS MSMEG_3323 NC_008596.1 3403263 3403796 D hypothetical protein 3403263..3403796 Mycobacterium smegmatis str. MC2 155 4532566 YP_887632.1 CDS MSMEG_3324 NC_008596.1 3403857 3404060 D hypothetical protein 3403857..3404060 Mycobacterium smegmatis str. MC2 155 4536882 YP_887633.1 CDS MSMEG_3325 NC_008596.1 3404121 3404624 R hypothetical protein complement(3404121..3404624) Mycobacterium smegmatis str. MC2 155 4534673 YP_887634.1 CDS MSMEG_3326 NC_008596.1 3404832 3406022 R identified by match to protein family HMM PF04107; match to protein family HMM TIGR02050; carboxylate-amine ligase complement(3404832..3406022) Mycobacterium smegmatis str. MC2 155 4532648 YP_887635.1 CDS MSMEG_3327 NC_008596.1 3406544 3406639 R hypothetical protein complement(3406544..3406639) Mycobacterium smegmatis str. MC2 155 4534692 YP_887636.1 CDS MSMEG_3328 NC_008596.1 3406973 3407374 R hypothetical protein complement(3406973..3407374) Mycobacterium smegmatis str. MC2 155 4533396 YP_887637.1 CDS MSMEG_3329 NC_008596.1 3407520 3407699 R hypothetical protein complement(3407520..3407699) Mycobacterium smegmatis str. MC2 155 4534261 YP_887638.1 CDS MSMEG_3330 NC_008596.1 3407751 3407924 R identified by match to protein family HMM PF05532; hypothetical protein complement(3407751..3407924) Mycobacterium smegmatis str. MC2 155 4532949 YP_887639.1 CDS MSMEG_3331 NC_008596.1 3407950 3408447 R hypothetical protein complement(3407950..3408447) Mycobacterium smegmatis str. MC2 155 4532425 YP_887640.1 CDS MSMEG_3332 NC_008596.1 3408671 3409429 D identified by match to protein family HMM PF00440; match to protein family HMM PF02909; TetR family transcriptional regulator 3408671..3409429 Mycobacterium smegmatis str. MC2 155 4536895 YP_887641.1 CDS MSMEG_3334 NC_008596.1 3411240 3411365 R hypothetical protein complement(3411240..3411365) Mycobacterium smegmatis str. MC2 155 4533870 YP_887642.1 CDS MSMEG_3335 NC_008596.1 3412441 3413250 D identified by match to protein family HMM PF01614; IclR family transcriptional regulator 3412441..3413250 Mycobacterium smegmatis str. MC2 155 4536661 YP_887643.1 CDS MSMEG_3336 NC_008596.1 3413291 3414058 R identified by match to protein family HMM PF00561; hydrolase complement(3413291..3414058) Mycobacterium smegmatis str. MC2 155 4536515 YP_887644.1 CDS MSMEG_3337 NC_008596.1 3414146 3414412 R hypothetical protein complement(3414146..3414412) Mycobacterium smegmatis str. MC2 155 4534628 YP_887645.1 CDS MSMEG_3338 NC_008596.1 3414655 3415773 D identified by match to protein family HMM PF00724; FAD/FMN-binding oxidoreductase 3414655..3415773 Mycobacterium smegmatis str. MC2 155 4535949 YP_887646.1 CDS MSMEG_3339 NC_008596.1 3416136 3416414 R hypothetical protein complement(3416136..3416414) Mycobacterium smegmatis str. MC2 155 4535316 YP_887647.1 CDS MSMEG_3340 NC_008596.1 3416615 3416989 R hypothetical protein complement(3416615..3416989) Mycobacterium smegmatis str. MC2 155 4537404 YP_887648.1 CDS MSMEG_3341 NC_008596.1 3417007 3418218 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase IS116/IS110/IS902 complement(3417007..3418218) Mycobacterium smegmatis str. MC2 155 4534529 YP_887649.1 CDS MSMEG_3342 NC_008596.1 3418987 3419235 D hypothetical protein 3418987..3419235 Mycobacterium smegmatis str. MC2 155 4536234 YP_887650.1 CDS MSMEG_3343 NC_008596.1 3419267 3420439 D hypothetical protein 3419267..3420439 Mycobacterium smegmatis str. MC2 155 4534595 YP_887651.1 CDS MSMEG_3344 NC_008596.1 3420444 3421532 R hypothetical protein complement(3420444..3421532) Mycobacterium smegmatis str. MC2 155 4537632 YP_887652.1 CDS MSMEG_3345 NC_008596.1 3421734 3422429 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator complement(3421734..3422429) Mycobacterium smegmatis str. MC2 155 4531402 YP_887653.1 CDS MSMEG_3346 NC_008596.1 3422532 3423314 D identified by match to protein family HMM PF03328; hydroxyacid aldolase 3422532..3423314 Mycobacterium smegmatis str. MC2 155 4536100 YP_887654.1 CDS MSMEG_3347 NC_008596.1 3423311 3424108 D identified by match to protein family HMM PF00795; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3423311..3424108 Mycobacterium smegmatis str. MC2 155 4534025 YP_887655.1 CDS MSMEG_3348 NC_008596.1 3424110 3425210 D identified by match to protein family HMM PF03480; extracellular solute-binding protein 3424110..3425210 Mycobacterium smegmatis str. MC2 155 4532813 YP_887656.1 CDS MSMEG_3349 NC_008596.1 3425207 3425725 D trap dicarboxylate transporter dctq subunit 3425207..3425725 Mycobacterium smegmatis str. MC2 155 4533070 YP_887657.1 CDS MSMEG_3350 NC_008596.1 3425722 3427083 D identified by match to protein family HMM PF06808; TRAP transporter DctM-like membrane protein 3425722..3427083 Mycobacterium smegmatis str. MC2 155 4533552 YP_887658.1 CDS MSMEG_3351 NC_008596.1 3427103 3427399 D hypothetical protein 3427103..3427399 Mycobacterium smegmatis str. MC2 155 4535046 YP_887659.1 CDS MSMEG_3352 NC_008596.1 3427593 3428096 R hypothetical protein complement(3427593..3428096) Mycobacterium smegmatis str. MC2 155 4533601 YP_887660.1 CDS MSMEG_3353 NC_008596.1 3428505 3428870 D hypothetical protein 3428505..3428870 Mycobacterium smegmatis str. MC2 155 4532002 YP_887661.1 CDS MSMEG_3354 NC_008596.1 3429446 3430054 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 3429446..3430054 Mycobacterium smegmatis str. MC2 155 4533287 YP_887662.1 CDS MSMEG_3355 NC_008596.1 3430051 3430938 D identified by similarity to GB:CAE31701.1; match to protein family HMM PF01370; match to protein family HMM PF05368; hypothetical protein 3430051..3430938 Mycobacterium smegmatis str. MC2 155 4535240 YP_887663.1 CDS MSMEG_3356 NC_008596.1 3431015 3431353 D identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026; hypothetical protein 3431015..3431353 Mycobacterium smegmatis str. MC2 155 4531010 YP_887664.1 CDS MSMEG_3357 NC_008596.1 3431438 3432004 D metal-dependent phosphohydrolase 3431438..3432004 Mycobacterium smegmatis str. MC2 155 4535027 YP_887665.1 CDS MSMEG_3358 NC_008596.1 3432244 3432795 D identified by match to protein family HMM PF07152; YaeQ protein 3432244..3432795 Mycobacterium smegmatis str. MC2 155 4530895 YP_887666.1 CDS MSMEG_3359 NC_008596.1 3433116 3433571 D identified by match to protein family HMM PF01361; cis-3-chloroacrylic acid dehalogenase 3433116..3433571 Mycobacterium smegmatis str. MC2 155 4531374 YP_887667.1 CDS MSMEG_3360 NC_008596.1 3433691 3434278 R identified by match to protein family HMM PF00440; transcriptional regulator complement(3433691..3434278) Mycobacterium smegmatis str. MC2 155 4533286 YP_887668.1 CDS MSMEG_3361 NC_008596.1 3434447 3435112 R hypothetical protein complement(3434447..3435112) Mycobacterium smegmatis str. MC2 155 4536231 YP_887669.1 CDS MSMEG_3362 NC_008596.1 3435357 3436148 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(3435357..3436148) Mycobacterium smegmatis str. MC2 155 4534418 YP_887670.1 CDS MSMEG_3363 NC_008596.1 3436349 3436951 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 3436349..3436951 Mycobacterium smegmatis str. MC2 155 4533607 YP_887671.1 CDS MSMEG_3364 NC_008596.1 3436955 3437581 D identified by match to protein family HMM PF01810; RhtB family protein transporter 3436955..3437581 Mycobacterium smegmatis str. MC2 155 4533310 YP_887672.1 CDS MSMEG_3365 NC_008596.1 3437657 3438670 D identified by match to protein family HMM PF00165; match to protein family HMM PF01965; AraC family transcriptional regulator 3437657..3438670 Mycobacterium smegmatis str. MC2 155 4534462 YP_887673.1 CDS MSMEG_3366 NC_008596.1 3438709 3439404 D identified by match to protein family HMM PF01965; isonitrile hydratase 3438709..3439404 Mycobacterium smegmatis str. MC2 155 4532232 YP_887674.1 CDS MSMEG_3367 NC_008596.1 3439442 3440194 D identified by match to protein family HMM PF00106; short-chain dehydrogenase/reductase SDR 3439442..3440194 Mycobacterium smegmatis str. MC2 155 4532383 YP_887675.1 CDS MSMEG_3368 NC_008596.1 3440233 3440370 R hypothetical protein complement(3440233..3440370) Mycobacterium smegmatis str. MC2 155 4535288 YP_887676.1 CDS MSMEG_3369 NC_008596.1 3440359 3441657 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; transporter 3440359..3441657 Mycobacterium smegmatis str. MC2 155 4532042 YP_887677.1 CDS MSMEG_3370 NC_008596.1 3441702 3441911 D hypothetical protein 3441702..3441911 Mycobacterium smegmatis str. MC2 155 4531384 YP_887678.1 CDS MSMEG_3372 NC_008596.1 3442809 3443147 R identified by match to protein family HMM PF01022; ArsR family transcriptional regulator complement(3442809..3443147) Mycobacterium smegmatis str. MC2 155 4537560 YP_887679.1 CDS MSMEG_3373 NC_008596.1 3443225 3444496 D identified by match to protein family HMM PF07690; major facilitator superfamily protein 3443225..3444496 Mycobacterium smegmatis str. MC2 155 4536447 YP_887680.1 CDS MSMEG_3374 NC_008596.1 3444504 3445529 R hypothetical protein complement(3444504..3445529) Mycobacterium smegmatis str. MC2 155 4532544 YP_887681.1 CDS MSMEG_3375 NC_008596.1 3445911 3447587 D identified by match to protein family HMM PF00732; match to protein family HMM PF05199; alcohol dehydrogenase 3445911..3447587 Mycobacterium smegmatis str. MC2 155 4533076 YP_887682.1 CDS MSMEG_3376 NC_008596.1 3447605 3448519 D identified by match to protein family HMM PF00753; beta-lactamase 3447605..3448519 Mycobacterium smegmatis str. MC2 155 4535493 YP_887683.1 CDS MSMEG_3377 NC_008596.1 3448679 3449362 R hypothetical protein complement(3448679..3449362) Mycobacterium smegmatis str. MC2 155 4537478 YP_887684.1 CDS MSMEG_3379 NC_008596.1 3450104 3450889 D identified by match to protein family HMM PF00106; 2-deoxy-D-gluconate 3-dehydrogenase 3450104..3450889 Mycobacterium smegmatis str. MC2 155 4533479 YP_887685.1 CDS MSMEG_3378 NC_008596.1 3450886 3452058 R identified by match to protein family HMM PF00144; beta-lactamase complement(3450886..3452058) Mycobacterium smegmatis str. MC2 155 4531330 YP_887686.1 CDS MSMEG_3380 NC_008596.1 3452237 3452626 D identified by match to protein family HMM PF01243; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 3452237..3452626 Mycobacterium smegmatis str. MC2 155 4532538 YP_887687.1 CDS MSMEG_3381 NC_008596.1 3452634 3453251 R identified by match to protein family HMM PF02525; ACP phosphodieterase complement(3452634..3453251) Mycobacterium smegmatis str. MC2 155 4532291 YP_887688.1 CDS MSMEG_3382 NC_008596.1 3453339 3453689 D identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 3453339..3453689 Mycobacterium smegmatis str. MC2 155 4535693 YP_887689.1 CDS MSMEG_3383 NC_008596.1 3453838 3453984 R hypothetical protein complement(3453838..3453984) Mycobacterium smegmatis str. MC2 155 4530871 YP_887690.1 CDS MSMEG_3384 NC_008596.1 3454069 3454998 R identified by match to protein family HMM PF05368; isoflavone reductase complement(3454069..3454998) Mycobacterium smegmatis str. MC2 155 4533457 YP_887691.1 CDS MSMEG_3385 NC_008596.1 3454995 3455480 R hypothetical protein complement(3454995..3455480) Mycobacterium smegmatis str. MC2 155 4534587 YP_887692.1 CDS MSMEG_3386 NC_008596.1 3455477 3456817 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; shikimate transporter complement(3455477..3456817) Mycobacterium smegmatis str. MC2 155 4536306 YP_887693.1 CDS MSMEG_3387 NC_008596.1 3456825 3458378 R identified by match to protein family HMM PF00171; aldehyde dehydrogenase complement(3456825..3458378) Mycobacterium smegmatis str. MC2 155 4534385 YP_887694.1 CDS MSMEG_3388 NC_008596.1 3458388 3459635 R identified by match to protein family HMM PF00107; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase complement(3458388..3459635) Mycobacterium smegmatis str. MC2 155 4531755 YP_887695.1 CDS MSMEG_3389 NC_008596.1 3459807 3461426 D identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; acetolactate synthase 3459807..3461426 Mycobacterium smegmatis str. MC2 155 4535022 YP_887696.1 CDS MSMEG_3390 NC_008596.1 3461441 3462214 D identified by match to protein family HMM PF00378; enoyl-CoA hydratase 3461441..3462214 Mycobacterium smegmatis str. MC2 155 4535963 YP_887697.1 CDS MSMEG_3391 NC_008596.1 3462268 3463464 D identified by match to protein family HMM PF02515; L-carnitine dehydratase/bile acid-inducible protein F 3462268..3463464 Mycobacterium smegmatis str. MC2 155 4532798 YP_887698.1 CDS MSMEG_3392 NC_008596.1 3463461 3464594 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase 3463461..3464594 Mycobacterium smegmatis str. MC2 155 4531631 YP_887699.1 CDS MSMEG_3393 NC_008596.1 3464591 3465574 D identified by match to protein family HMM PF00441; acyl-CoA dehydrogenase 3464591..3465574 Mycobacterium smegmatis str. MC2 155 4530941 YP_887700.1 CDS MSMEG_3394 NC_008596.1 3465586 3466005 D identified by match to protein family HMM PF07883; cupin 3465586..3466005 Mycobacterium smegmatis str. MC2 155 4533503 YP_887701.1 CDS MSMEG_3395 NC_008596.1 3466032 3466808 D identified by match to protein family HMM PF00106; short chain dehydrogenase 3466032..3466808 Mycobacterium smegmatis str. MC2 155 4536287 YP_887702.1 CDS MSMEG_3396 NC_008596.1 3466818 3467594 R identified by match to protein family HMM PF01614; IclR family transcriptional regulator complement(3466818..3467594) Mycobacterium smegmatis str. MC2 155 4535782 YP_887703.1 CDS MSMEG_3397 NC_008596.1 3467633 3468964 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase complement(3467633..3468964) Mycobacterium smegmatis str. MC2 155 4532695 YP_887704.1 CDS MSMEG_3398 NC_008596.1 3469021 3470343 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; integral membrane transporter complement(3469021..3470343) Mycobacterium smegmatis str. MC2 155 4533256 YP_887705.1 CDS MSMEG_3400 NC_008596.1 3471648 3473846 D identified by match to protein family HMM PF00392; match to protein family HMM PF01425; match to protein family HMM PF07729; glutamyl-tRNA(Gln) amidotransferase subunit A 3471648..3473846 Mycobacterium smegmatis str. MC2 155 4535473 YP_887706.1 CDS MSMEG_3401 NC_008596.1 3473843 3474640 D identified by match to protein family HMM PF03746; LamB/YcsF family protein 3473843..3474640 Mycobacterium smegmatis str. MC2 155 4533517 YP_887707.1 CDS MSMEG_3402 NC_008596.1 3474657 3476018 D identified by match to protein family HMM PF02133; cytosine permease 3474657..3476018 Mycobacterium smegmatis str. MC2 155 4536450 YP_887708.1 CDS amiF NC_008596.1 3476015 3477016 D formamide amidohydrolase; catalyzes the hydrolysis of formamide to formate; formamidase 3476015..3477016 Mycobacterium smegmatis str. MC2 155 4536792 YP_887709.1 CDS MSMEG_3404 NC_008596.1 3477089 3478327 D identified by match to protein family HMM PF01844; HNH endonuclease domain-containing protein 3477089..3478327 Mycobacterium smegmatis str. MC2 155 4532092 YP_887710.1 CDS MSMEG_3405 NC_008596.1 3478441 3479892 R identified by match to protein family HMM PF07690; methylenomycin A resistance protein complement(3478441..3479892) Mycobacterium smegmatis str. MC2 155 4532066 YP_887711.1 CDS MSMEG_3406 NC_008596.1 3479977 3480570 D TetR family transcriptional regulator 3479977..3480570 Mycobacterium smegmatis str. MC2 155 4533561 YP_887712.1 CDS MSMEG_3407 NC_008596.1 3480577 3481794 R identified by match to protein family HMM PF00561; match to protein family HMM PF06441; epoxide hydrolase complement(3480577..3481794) Mycobacterium smegmatis str. MC2 155 4533605 YP_887713.1 CDS MSMEG_3408 NC_008596.1 3481863 3482456 D identified by match to protein family HMM PF07336; hypothetical protein 3481863..3482456 Mycobacterium smegmatis str. MC2 155 4532810 YP_887714.1 CDS MSMEG_3409 NC_008596.1 3482577 3483530 R identified by match to protein family HMM PF00107; oxidoreductase complement(3482577..3483530) Mycobacterium smegmatis str. MC2 155 4533166 YP_887715.1 CDS MSMEG_3410 NC_008596.1 3483534 3484115 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(3483534..3484115) Mycobacterium smegmatis str. MC2 155 4532354 YP_887716.1 CDS MSMEG_3411 NC_008596.1 3484243 3484680 D identified by match to protein family HMM PF03473; MOSC domain-containing protein 3484243..3484680 Mycobacterium smegmatis str. MC2 155 4533509 YP_887717.1 CDS MSMEG_3412 NC_008596.1 3484684 3485550 R identified by match to protein family HMM PF01522; polysaccharide deacetylase complement(3484684..3485550) Mycobacterium smegmatis str. MC2 155 4536889 YP_887718.1 CDS MSMEG_3414 NC_008596.1 3486061 3487176 R hypothetical protein complement(3486061..3487176) Mycobacterium smegmatis str. MC2 155 4531133 YP_887719.1 CDS MSMEG_3415 NC_008596.1 3487270 3487755 D identified by match to protein family HMM PF01047; match to protein family HMM PF01978; MarR family transcriptional regulator 3487270..3487755 Mycobacterium smegmatis str. MC2 155 4531836 YP_887720.1 CDS MSMEG_3416 NC_008596.1 3487878 3488744 D identified by match to protein family HMM PF00892; hypothetical protein 3487878..3488744 Mycobacterium smegmatis str. MC2 155 4534448 YP_887721.1 CDS MSMEG_3417 NC_008596.1 3488769 3489272 R hypothetical protein complement(3488769..3489272) Mycobacterium smegmatis str. MC2 155 4531568 YP_887722.1 CDS MSMEG_3418 NC_008596.1 3489356 3489784 R hypothetical protein complement(3489356..3489784) Mycobacterium smegmatis str. MC2 155 4534419 YP_887723.1 CDS MSMEG_3419 NC_008596.1 3489877 3490839 R hypothetical protein complement(3489877..3490839) Mycobacterium smegmatis str. MC2 155 4534843 YP_887724.1 CDS MSMEG_3420 NC_008596.1 3491197 3491967 R identified by match to protein family HMM PF00106; gluconate 5-dehydrogenase complement(3491197..3491967) Mycobacterium smegmatis str. MC2 155 4531628 YP_887725.1 CDS MSMEG_3421 NC_008596.1 3491964 3493388 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; inner membrane metabolite transporter YdfJ complement(3491964..3493388) Mycobacterium smegmatis str. MC2 155 4531939 YP_887726.1 CDS MSMEG_3422 NC_008596.1 3493671 3494702 D identified by match to protein family HMM PF00899; match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase 3493671..3494702 Mycobacterium smegmatis str. MC2 155 4537178 YP_887727.1 CDS MSMEG_3423 NC_008596.1 3494759 3495541 D identified by match to protein family HMM PF01614; IclR family protein regulator 3494759..3495541 Mycobacterium smegmatis str. MC2 155 4535945 YP_887728.1 CDS MSMEG_3424 NC_008596.1 3495569 3496423 D identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027; MerR family transcriptional regulator 3495569..3496423 Mycobacterium smegmatis str. MC2 155 4532210 YP_887729.1 CDS MSMEG_3425 NC_008596.1 3496425 3497039 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(3496425..3497039) Mycobacterium smegmatis str. MC2 155 4533221 YP_887730.1 CDS MSMEG_3426 NC_008596.1 3497064 3497915 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase complement(3497064..3497915) Mycobacterium smegmatis str. MC2 155 4532763 YP_887731.1 CDS MSMEG_3427 NC_008596.1 3498088 3499005 D identified by match to protein family HMM PF00753; metal dependent hydrolase 3498088..3499005 Mycobacterium smegmatis str. MC2 155 4534282 YP_887732.1 CDS MSMEG_3428 NC_008596.1 3499056 3499430 D hypothetical protein 3499056..3499430 Mycobacterium smegmatis str. MC2 155 4533920 YP_887733.1 CDS MSMEG_3429 NC_008596.1 3499988 3501115 D identified by match to protein family HMM PF01757; O-acyl transferase 3499988..3501115 Mycobacterium smegmatis str. MC2 155 4537248 YP_887734.1 CDS MSMEG_3430 NC_008596.1 3501227 3501832 D SAM-dependent methyltransferase 3501227..3501832 Mycobacterium smegmatis str. MC2 155 4535387 YP_887735.1 CDS MSMEG_3431 NC_008596.1 3501834 3502136 R identified by match to protein family HMM PF05199; choline dehydrogenase complement(3501834..3502136) Mycobacterium smegmatis str. MC2 155 4536121 YP_887736.1 CDS MSMEG_3433 NC_008596.1 3502304 3503770 D identified by similarity to GP:2935133; match to protein family HMM PF01609; IS1549, transposase 3502304..3503770 Mycobacterium smegmatis str. MC2 155 4531457 YP_887737.1 CDS MSMEG_3432 NC_008596.1 3503726 3505195 R identified by match to protein family HMM PF00732; choline dehydrogenase complement(3503726..3505195) Mycobacterium smegmatis str. MC2 155 4533656 YP_887738.1 CDS MSMEG_3434 NC_008596.1 3505505 3506134 D identified by match to protein family HMM PF00254; peptidyl-prolyl cis-trans isomerase domain-containing protein 3505505..3506134 Mycobacterium smegmatis str. MC2 155 4531859 YP_887739.1 CDS MSMEG_3435 NC_008596.1 3506198 3506590 D hypothetical protein 3506198..3506590 Mycobacterium smegmatis str. MC2 155 4537034 YP_887740.1 CDS MSMEG_3436 NC_008596.1 3506616 3507194 D hypothetical protein 3506616..3507194 Mycobacterium smegmatis str. MC2 155 4533182 YP_887741.1 CDS MSMEG_3437 NC_008596.1 3507206 3508558 R identified by match to protein family HMM PF00756; match to protein family HMM PF01476; esterase complement(3507206..3508558) Mycobacterium smegmatis str. MC2 155 4532472 YP_887742.1 CDS MSMEG_3438 NC_008596.1 3508887 3509057 R hypothetical protein complement(3508887..3509057) Mycobacterium smegmatis str. MC2 155 4536976 YP_887743.1 CDS MSMEG_3439 NC_008596.1 3508893 3509048 D hypothetical protein 3508893..3509048 Mycobacterium smegmatis str. MC2 155 4536735 YP_887744.1 CDS sdaA NC_008596.1 3509255 3510631 D identified by similarity to SP:P16095; match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase 3509255..3510631 Mycobacterium smegmatis str. MC2 155 4534481 YP_887745.1 CDS MSMEG_3441 NC_008596.1 3510665 3511171 R hypothetical protein complement(3510665..3511171) Mycobacterium smegmatis str. MC2 155 4536138 YP_887746.1 CDS MSMEG_3442 NC_008596.1 3511367 3512173 D identified by match to protein family HMM PF00497; cyclohexadienyl dehydratase 3511367..3512173 Mycobacterium smegmatis str. MC2 155 4531157 YP_887747.1 CDS MSMEG_3443 NC_008596.1 3512255 3512413 D hypothetical protein 3512255..3512413 Mycobacterium smegmatis str. MC2 155 4531436 YP_887748.1 CDS MSMEG_3444 NC_008596.1 3512435 3513934 R identified by match to protein family HMM PF00732; match to protein family HMM PF05199; choline dehydrogenase complement(3512435..3513934) Mycobacterium smegmatis str. MC2 155 4534084 YP_887749.1 CDS MSMEG_3445 NC_008596.1 3514040 3515053 D identified by match to protein family HMM PF00296; 5,10-methylenetetrahydromethanopterin reductase 3514040..3515053 Mycobacterium smegmatis str. MC2 155 4534185 YP_887750.1 CDS MSMEG_3446 NC_008596.1 3515287 3515433 D hypothetical protein 3515287..3515433 Mycobacterium smegmatis str. MC2 155 4535155 YP_887751.1 CDS MSMEG_3447 NC_008596.1 3515585 3516229 D identified by match to protein family HMM PF00072; match to protein family HMM PF00196; two-component system response regulator 3515585..3516229 Mycobacterium smegmatis str. MC2 155 4534224 YP_887752.1 CDS MSMEG_3448 NC_008596.1 3516234 3517415 R identified by match to protein family HMM PF02518; match to protein family HMM PF07730; two-component system sensor kinase complement(3516234..3517415) Mycobacterium smegmatis str. MC2 155 4534211 YP_887753.1 CDS MSMEG_3449 NC_008596.1 3517620 3518267 R DNA-binding protein complement(3517620..3518267) Mycobacterium smegmatis str. MC2 155 4535013 YP_887754.1 CDS dehII NC_008596.1 3518377 3519072 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493; haloacid dehalogenase 3518377..3519072 Mycobacterium smegmatis str. MC2 155 4531620 YP_887755.1 CDS MSMEG_3451 NC_008596.1 3519095 3519946 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short-chain dehydrogenase/reductase complement(3519095..3519946) Mycobacterium smegmatis str. MC2 155 4533203 YP_887756.1 CDS MSMEG_3452 NC_008596.1 3520041 3520619 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 3520041..3520619 Mycobacterium smegmatis str. MC2 155 4533050 YP_887757.1 CDS MSMEG_3454 NC_008596.1 3520758 3521030 D hypothetical protein 3520758..3521030 Mycobacterium smegmatis str. MC2 155 4534708 YP_887758.1 CDS MSMEG_3453 NC_008596.1 3521023 3521151 R hypothetical protein complement(3521023..3521151) Mycobacterium smegmatis str. MC2 155 4532620 YP_887759.1 CDS hslR NC_008596.1 3521165 3521548 D identified by match to protein family HMM PF01479; heat shock protein 15 3521165..3521548 Mycobacterium smegmatis str. MC2 155 4532627 YP_887760.1 CDS MSMEG_3456 NC_008596.1 3521554 3521997 R hydroxylaminobenzene mutase complement(3521554..3521997) Mycobacterium smegmatis str. MC2 155 4533954 YP_887761.1 CDS MSMEG_3457 NC_008596.1 3522131 3523492 R identified by match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF07992; DoxD family protein/pyridine nucleotide-disulfide oxidoreductase complement(3522131..3523492) Mycobacterium smegmatis str. MC2 155 4534058 YP_887762.1 CDS MSMEG_3458 NC_008596.1 3523559 3524395 R hypothetical protein complement(3523559..3524395) Mycobacterium smegmatis str. MC2 155 4535731 YP_887763.1 CDS MSMEG_3459 NC_008596.1 3524499 3526022 R identified by match to protein family HMM PF06738; hypothetical protein complement(3524499..3526022) Mycobacterium smegmatis str. MC2 155 4534125 YP_887764.1 CDS MSMEG_3460 NC_008596.1 3526436 3526876 D identified by match to protein family HMM PF01475; ferric uptake regulation protein 3526436..3526876 Mycobacterium smegmatis str. MC2 155 4535078 YP_887765.1 CDS katG NC_008596.1 3526916 3529162 D identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198; catalase/peroxidase HPI 3526916..3529162 Mycobacterium smegmatis str. MC2 155 4536428 YP_887766.1 CDS MSMEG_3462 NC_008596.1 3529328 3529993 D identified by match to protein family HMM PF00881; oxidoreductase 3529328..3529993 Mycobacterium smegmatis str. MC2 155 4531013 YP_887767.1 CDS MSMEG_3463 NC_008596.1 3529999 3530907 R esterase complement(3529999..3530907) Mycobacterium smegmatis str. MC2 155 4534237 YP_887768.1 CDS MSMEG_3464 NC_008596.1 3531027 3532043 R identified by match to protein family HMM PF00107; alcohol dehydrogenase complement(3531027..3532043) Mycobacterium smegmatis str. MC2 155 4533362 YP_887769.1 CDS MSMEG_3465 NC_008596.1 3532122 3533981 R activates fatty acids by binding to coenzyme A; fatty-acid--CoA ligase complement(3532122..3533981) Mycobacterium smegmatis str. MC2 155 4535685 YP_887770.1 CDS MSMEG_3466 NC_008596.1 3534056 3534223 R hypothetical protein complement(3534056..3534223) Mycobacterium smegmatis str. MC2 155 4536041 YP_887771.1 CDS MSMEG_3468 NC_008596.1 3534240 3535796 D identified by match to protein family HMM PF00501; AMP-binding protein 3534240..3535796 Mycobacterium smegmatis str. MC2 155 4537301 YP_887772.1 CDS MSMEG_3467 NC_008596.1 3535783 3536193 R hypothetical protein complement(3535783..3536193) Mycobacterium smegmatis str. MC2 155 4534547 YP_887773.1 CDS MSMEG_3469 NC_008596.1 3536190 3536777 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(3536190..3536777) Mycobacterium smegmatis str. MC2 155 4530831 YP_887774.1 CDS MSMEG_3470 NC_008596.1 3536879 3537790 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase 3536879..3537790 Mycobacterium smegmatis str. MC2 155 4532045 YP_887775.1 CDS MSMEG_3471 NC_008596.1 3537873 3539153 D hypothetical protein 3537873..3539153 Mycobacterium smegmatis str. MC2 155 4532976 YP_887776.1 CDS MSMEG_3472 NC_008596.1 3539153 3540352 D identified by match to protein family HMM PF07958; hypothetical protein 3539153..3540352 Mycobacterium smegmatis str. MC2 155 4533996 YP_887777.1 CDS upp NC_008596.1 3540363 3540992 D identified by match to protein family HMM PF00156; match to protein family HMM TIGR01091; uracil phosphoribosyltransferase 3540363..3540992 Mycobacterium smegmatis str. MC2 155 4537591 YP_887778.1 CDS MSMEG_3474 NC_008596.1 3541055 3541705 D identified by match to protein family HMM PF02517; integral membrane protein 3541055..3541705 Mycobacterium smegmatis str. MC2 155 4532224 YP_887779.1 CDS MSMEG_3475 NC_008596.1 3541709 3542491 R hypothetical protein complement(3541709..3542491) Mycobacterium smegmatis str. MC2 155 4534950 YP_887780.1 CDS MSMEG_3476 NC_008596.1 3542549 3543670 R identified by match to protein family HMM PF01435; peptidase, M48 family protein complement(3542549..3543670) Mycobacterium smegmatis str. MC2 155 4531681 YP_887781.1 CDS MSMEG_3477 NC_008596.1 3543755 3544417 R identified by match to protein family HMM PF00877; inv protein complement(3543755..3544417) Mycobacterium smegmatis str. MC2 155 4533579 YP_887782.1 CDS MSMEG_3478 NC_008596.1 3544716 3545447 D identified by match to protein family HMM PF03070; tena/thi-4 family protein 3544716..3545447 Mycobacterium smegmatis str. MC2 155 4531292 YP_887783.1 CDS tpx NC_008596.1 3545574 3546068 R antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase complement(3545574..3546068) Mycobacterium smegmatis str. MC2 155 4537659 YP_887784.1 CDS MSMEG_3480 NC_008596.1 3546179 3547108 D identified by match to protein family HMM PF04655; streptomycin 6-kinase 3546179..3547108 Mycobacterium smegmatis str. MC2 155 4534015 YP_887785.1 CDS MSMEG_3481 NC_008596.1 3547122 3548174 R identified by match to protein family HMM PF01188; O-succinylbenzoate synthase complement(3547122..3548174) Mycobacterium smegmatis str. MC2 155 4531453 YP_887786.1 CDS MSMEG_3482 NC_008596.1 3548221 3548475 D hypothetical protein 3548221..3548475 Mycobacterium smegmatis str. MC2 155 4533497 YP_887787.1 CDS MSMEG_3483 NC_008596.1 3548528 3549193 D identified by match to protein family HMM PF03473; mosc domain-containing protein 3548528..3549193 Mycobacterium smegmatis str. MC2 155 4536271 YP_887788.1 CDS MSMEG_3484 NC_008596.1 3549195 3549722 R identified by match to protein family HMM PF07883; cupin complement(3549195..3549722) Mycobacterium smegmatis str. MC2 155 4535836 YP_887789.1 CDS MSMEG_3485 NC_008596.1 3549755 3550351 R identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; ECF sigma factor RpoE1 complement(3549755..3550351) Mycobacterium smegmatis str. MC2 155 4535779 YP_887790.1 CDS katA NC_008596.1 3550348 3551805 R identified by similarity to SP:P26901; match to protein family HMM PF00199; catalase KatA complement(3550348..3551805) Mycobacterium smegmatis str. MC2 155 4537370 YP_887791.1 CDS MSMEG_3487 NC_008596.1 3551822 3552478 R identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; metal-dependent phosphohydrolase complement(3551822..3552478) Mycobacterium smegmatis str. MC2 155 4537320 YP_887792.1 CDS MSMEG_3488 NC_008596.1 3552713 3553684 D identified by match to protein family HMM PF00165; match to protein family HMM PF01965; AraC family transcriptional regulator 3552713..3553684 Mycobacterium smegmatis str. MC2 155 4535965 YP_887793.1 CDS MSMEG_3489 NC_008596.1 3553689 3554375 R identified by match to protein family HMM PF00657; hypothetical protein complement(3553689..3554375) Mycobacterium smegmatis str. MC2 155 4537088 YP_887794.1 CDS MSMEG_3490 NC_008596.1 3554508 3555722 R identified by match to protein family HMM PF01757; membrane acyltransferase complement(3554508..3555722) Mycobacterium smegmatis str. MC2 155 4535096 YP_887795.1 CDS MSMEG_3491 NC_008596.1 3556086 3556586 R hypothetical protein complement(3556086..3556586) Mycobacterium smegmatis str. MC2 155 4536831 YP_887796.1 CDS MSMEG_3492 NC_008596.1 3556736 3557890 D identified by match to protein family HMM PF01663; phosphodiesterase 3556736..3557890 Mycobacterium smegmatis str. MC2 155 4532766 YP_887797.1 CDS MSMEG_3493 NC_008596.1 3557926 3558267 D identified by match to protein family HMM PF05305; hypothetical protein 3557926..3558267 Mycobacterium smegmatis str. MC2 155 4536946 YP_887798.1 CDS MSMEG_3494 NC_008596.1 3558309 3558770 D hypothetical protein 3558309..3558770 Mycobacterium smegmatis str. MC2 155 4535586 YP_887799.1 CDS MSMEG_3495 NC_008596.1 3559120 3559596 D identified by match to protein family HMM PF05423; MmpS5 protein 3559120..3559596 Mycobacterium smegmatis str. MC2 155 4533929 YP_887800.1 CDS MSMEG_3496 NC_008596.1 3559593 3562502 D identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833; MmpL4 protein 3559593..3562502 Mycobacterium smegmatis str. MC2 155 4533413 YP_887801.1 CDS MSMEG_3497 NC_008596.1 3562524 3563264 R ArsR family transcriptional regulator complement(3562524..3563264) Mycobacterium smegmatis str. MC2 155 4532717 YP_887802.1 CDS MSMEG_3498 NC_008596.1 3563614 3563733 D hypothetical protein 3563614..3563733 Mycobacterium smegmatis str. MC2 155 4533231 YP_887803.1 CDS MSMEG_3499 NC_008596.1 3563799 3564401 D hypothetical protein 3563799..3564401 Mycobacterium smegmatis str. MC2 155 4535087 YP_887804.1 CDS MSMEG_3500 NC_008596.1 3564453 3565199 D identified by match to protein family HMM PF03883; hypothetical protein 3564453..3565199 Mycobacterium smegmatis str. MC2 155 4534838 YP_887805.1 CDS MSMEG_3501 NC_008596.1 3565323 3565700 R hypothetical protein complement(3565323..3565700) Mycobacterium smegmatis str. MC2 155 4534811 YP_887806.1 CDS MSMEG_3502 NC_008596.1 3565749 3565904 D hypothetical protein 3565749..3565904 Mycobacterium smegmatis str. MC2 155 4536594 YP_887807.1 CDS MSMEG_3503 NC_008596.1 3566211 3566756 D hypothetical protein 3566211..3566756 Mycobacterium smegmatis str. MC2 155 4530859 YP_887808.1 CDS MSMEG_3504 NC_008596.1 3566848 3567099 D hypothetical protein 3566848..3567099 Mycobacterium smegmatis str. MC2 155 4533032 YP_887809.1 CDS MSMEG_3505 NC_008596.1 3567077 3568549 D identified by match to protein family HMM PF01425; 6-aminohexanoate-cyclic-dimer hydrolase 3567077..3568549 Mycobacterium smegmatis str. MC2 155 4534403 YP_887810.1 CDS MSMEG_3506 NC_008596.1 3568572 3569969 D identified by match to protein family HMM PF00282; match to protein family HMM PF01212; amino acid decarboxylase 3568572..3569969 Mycobacterium smegmatis str. MC2 155 4533615 YP_887811.1 CDS MSMEG_3507 NC_008596.1 3570092 3570985 D catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis; fructose-1,6-bisphosphate aldolase 3570092..3570985 Mycobacterium smegmatis str. MC2 155 4534963 YP_887812.1 CDS MSMEG_3508 NC_008596.1 3571016 3571939 D identified by match to protein family HMM PF00561; alpha/beta hydrolase 3571016..3571939 Mycobacterium smegmatis str. MC2 155 4532238 YP_887813.1 CDS MSMEG_3509 NC_008596.1 3572011 3572664 D hypothetical protein 3572011..3572664 Mycobacterium smegmatis str. MC2 155 4533493 YP_887814.1 CDS MSMEG_3511 NC_008596.1 3572774 3574159 D identified by match to protein family HMM PF01494; hydroxylase 3572774..3574159 Mycobacterium smegmatis str. MC2 155 4532669 YP_887815.1 CDS MSMEG_3510 NC_008596.1 3574156 3575241 R identified by similarity to GB:CAD18826.1; ISMsm2, transposase complement(3574156..3575241) Mycobacterium smegmatis str. MC2 155 4537692 YP_887816.1 CDS MSMEG_3512 NC_008596.1 3575284 3576576 R identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; competence damage-inducible protein A complement(3575284..3576576) Mycobacterium smegmatis str. MC2 155 4533759 YP_887817.1 CDS MSMEG_3513 NC_008596.1 3576626 3577834 R hypothetical protein complement(3576626..3577834) Mycobacterium smegmatis str. MC2 155 4534906 YP_887818.1 CDS MSMEG_3514 NC_008596.1 3577888 3578115 R hypothetical protein complement(3577888..3578115) Mycobacterium smegmatis str. MC2 155 4534457 YP_887819.1 CDS MSMEG_3515 NC_008596.1 3578173 3578910 R identified by match to protein family HMM PF00106; 3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase complement(3578173..3578910) Mycobacterium smegmatis str. MC2 155 4537399 YP_887820.1 CDS MSMEG_3517 NC_008596.1 3580099 3580770 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; HAD-superfamily hydrolase complement(3580099..3580770) Mycobacterium smegmatis str. MC2 155 4534988 YP_887821.1 CDS MSMEG_3518 NC_008596.1 3580892 3581272 D hypothetical protein 3580892..3581272 Mycobacterium smegmatis str. MC2 155 4533312 YP_887822.1 CDS MSMEG_3519 NC_008596.1 3581377 3582507 D identified by match to protein family HMM PF03060; oxidoreductase, 2-nitropropane dioxygenase 3581377..3582507 Mycobacterium smegmatis str. MC2 155 4535743 YP_887823.1 CDS MSMEG_3520 NC_008596.1 3582635 3583222 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 3582635..3583222 Mycobacterium smegmatis str. MC2 155 4535482 YP_887824.1 CDS MSMEG_3521 NC_008596.1 3583219 3585468 D identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; molybdopterin oxidoreductase 3583219..3585468 Mycobacterium smegmatis str. MC2 155 4531080 YP_887825.1 CDS MSMEG_3522 NC_008596.1 3585553 3585981 R dopamine receptor D4 complement(3585553..3585981) Mycobacterium smegmatis str. MC2 155 4532264 YP_887826.1 CDS MSMEG_3524 NC_008596.1 3586215 3587507 D linalool 8-monooxygenase 3586215..3587507 Mycobacterium smegmatis str. MC2 155 4533710 YP_887827.1 CDS MSMEG_3523 NC_008596.1 3587428 3587847 R hypothetical protein complement(3587428..3587847) Mycobacterium smegmatis str. MC2 155 4532969 YP_887828.1 CDS MSMEG_3525 NC_008596.1 3587930 3588706 D identified by match to protein family HMM PF01381; XRE family transcriptional regulator 3587930..3588706 Mycobacterium smegmatis str. MC2 155 4535228 YP_887829.1 CDS MSMEG_3526 NC_008596.1 3588785 3589417 D identified by match to protein family HMM TIGR01926; hypothetical protein 3588785..3589417 Mycobacterium smegmatis str. MC2 155 4534433 YP_887830.1 CDS MSMEG_3527 NC_008596.1 3589470 3590201 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; HTH-type transcriptional regulator 3589470..3590201 Mycobacterium smegmatis str. MC2 155 4536783 YP_887831.1 CDS MSMEG_3529 NC_008596.1 3590198 3590848 D identified by match to protein family HMM PF04116; fatty acid hydroxylase 3590198..3590848 Mycobacterium smegmatis str. MC2 155 4533526 YP_887832.1 CDS MSMEG_3528 NC_008596.1 3590832 3591611 R identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein complement(3590832..3591611) Mycobacterium smegmatis str. MC2 155 4532567 YP_887833.1 CDS MSMEG_3530 NC_008596.1 3591737 3592342 R hypothetical protein complement(3591737..3592342) Mycobacterium smegmatis str. MC2 155 4531811 YP_887834.1 CDS MSMEG_3531 NC_008596.1 3592366 3593796 R hypothetical protein complement(3592366..3593796) Mycobacterium smegmatis str. MC2 155 4530838 YP_887835.1 CDS MSMEG_3533 NC_008596.1 3593962 3595527 D identified by match to protein family HMM PF00854; match to protein family HMM TIGR00924; di-/tripeptide transporter 3593962..3595527 Mycobacterium smegmatis str. MC2 155 4536263 YP_887836.1 CDS MSMEG_3532 NC_008596.1 3595524 3596474 R identified by match to protein family HMM PF00291; serine/threonine dehydratase complement(3595524..3596474) Mycobacterium smegmatis str. MC2 155 4535291 YP_887837.1 CDS MSMEG_3534 NC_008596.1 3596576 3597016 D identified by match to protein family HMM PF03061; 4-hydroxybenzoyl-CoA thioesterase 3596576..3597016 Mycobacterium smegmatis str. MC2 155 4535750 YP_887838.1 CDS speB NC_008596.1 3597069 3598112 D identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; agmatinase 3597069..3598112 Mycobacterium smegmatis str. MC2 155 4533678 YP_887839.1 CDS MSMEG_3536 NC_008596.1 3598192 3600066 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; sugar transporter 3598192..3600066 Mycobacterium smegmatis str. MC2 155 4534459 YP_887840.1 CDS MSMEG_3537 NC_008596.1 3600074 3600313 D hypothetical protein 3600074..3600313 Mycobacterium smegmatis str. MC2 155 4537694 YP_887841.1 CDS MSMEG_3538 NC_008596.1 3600326 3601186 R identified by match to protein family HMM PF02353; cyclopropane-fatty-acyl-phospholipid synthase complement(3600326..3601186) Mycobacterium smegmatis str. MC2 155 4534933 YP_887842.1 CDS MSMEG_3539 NC_008596.1 3601197 3601316 D hypothetical protein 3601197..3601316 Mycobacterium smegmatis str. MC2 155 4536272 YP_887843.1 CDS MSMEG_3540 NC_008596.1 3601386 3601607 D hypothetical protein 3601386..3601607 Mycobacterium smegmatis str. MC2 155 4532858 YP_887844.1 CDS MSMEG_3542 NC_008596.1 3601604 3601975 D hypothetical protein 3601604..3601975 Mycobacterium smegmatis str. MC2 155 4532416 YP_887845.1 CDS MSMEG_3541 NC_008596.1 3601917 3602810 R identified by match to protein family HMM PF02683; cytochrome C biogenesis protein transmembrane region complement(3601917..3602810) Mycobacterium smegmatis str. MC2 155 4537433 YP_887846.1 CDS MSMEG_3543 NC_008596.1 3602815 3603345 R hypothetical protein complement(3602815..3603345) Mycobacterium smegmatis str. MC2 155 4537228 YP_887847.1 CDS MSMEG_3544 NC_008596.1 3603465 3604370 R identified by match to protein family HMM PF00296; hypothetical protein complement(3603465..3604370) Mycobacterium smegmatis str. MC2 155 4537411 YP_887848.1 CDS MSMEG_3545 NC_008596.1 3604423 3605046 R hypothetical protein complement(3604423..3605046) Mycobacterium smegmatis str. MC2 155 4533711 YP_887849.1 CDS MSMEG_3546 NC_008596.1 3605339 3606676 D hypothetical protein 3605339..3606676 Mycobacterium smegmatis str. MC2 155 4531486 YP_887850.1 CDS ehuB NC_008596.1 3607110 3607949 D identified by match to protein family HMM PF00497; match to protein family HMM TIGR01409; match to protein family HMM TIGR02995; ectoine/hydroxyectoine ABC transporter solute-binding protein 3607110..3607949 Mycobacterium smegmatis str. MC2 155 4530820 YP_887851.1 CDS ehuC NC_008596.1 3607960 3608673 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; match to protein family HMM TIGR03004; ectoine/hydroxyectoine ABC transporter permease EhuC 3607960..3608673 Mycobacterium smegmatis str. MC2 155 4532142 YP_887852.1 CDS ehuD NC_008596.1 3608670 3609350 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; match to protein family HMM TIGR03003; ectoine/hydroxyectoine ABC transporter permease EhuD 3608670..3609350 Mycobacterium smegmatis str. MC2 155 4532332 YP_887853.1 CDS ehuA NC_008596.1 3609381 3610136 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR03005; ectoine/hydroxyectoine ABC transporter ATP-binding protein 3609381..3610136 Mycobacterium smegmatis str. MC2 155 4536535 YP_887854.1 CDS MSMEG_3551 NC_008596.1 3610192 3611469 D identified by match to protein family HMM PF00067; linalool 8-monooxygenase 3610192..3611469 Mycobacterium smegmatis str. MC2 155 4535713 YP_887855.1 CDS MSMEG_3552 NC_008596.1 3611488 3612708 R hypothetical protein complement(3611488..3612708) Mycobacterium smegmatis str. MC2 155 4534596 YP_887856.1 CDS hydA NC_008596.1 3612964 3614376 D catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase 3612964..3614376 Mycobacterium smegmatis str. MC2 155 4534579 YP_887857.1 CDS MSMEG_3554 NC_008596.1 3614417 3615436 D identified by match to protein family HMM PF00296; N5,N10-methylene- tetrahydromethanopterin reductase 3614417..3615436 Mycobacterium smegmatis str. MC2 155 4535427 YP_887858.1 CDS MSMEG_3555 NC_008596.1 3615464 3616312 D identified by match to protein family HMM PF00795; hydrolase 3615464..3616312 Mycobacterium smegmatis str. MC2 155 4531152 YP_887859.1 CDS MSMEG_3556 NC_008596.1 3616326 3617897 D identified by match to protein family HMM PF02133; integral membrane transporter 3616326..3617897 Mycobacterium smegmatis str. MC2 155 4533619 YP_887860.1 CDS MSMEG_3557 NC_008596.1 3617957 3619402 R identified by match to protein family HMM PF00324; amino acid permease complement(3617957..3619402) Mycobacterium smegmatis str. MC2 155 4532253 YP_887861.1 CDS MSMEG_3558 NC_008596.1 3619557 3620492 R identified by match to protein family HMM PF01738; carboxymethylenebutenolidase complement(3619557..3620492) Mycobacterium smegmatis str. MC2 155 4536235 YP_887862.1 CDS MSMEG_3559 NC_008596.1 3620574 3621500 D short chain dehydrogenase 3620574..3621500 Mycobacterium smegmatis str. MC2 155 4537590 YP_887863.1 CDS MSMEG_3560 NC_008596.1 3621505 3621867 R hypothetical protein complement(3621505..3621867) Mycobacterium smegmatis str. MC2 155 4537681 YP_887864.1 CDS glnA NC_008596.1 3621908 3623269 R identified by match to protein family HMM PF00120; glutamine synthetase complement(3621908..3623269) Mycobacterium smegmatis str. MC2 155 4534417 YP_887865.1 CDS pcaC NC_008596.1 3623312 3623794 R identified by match to protein family HMM PF02627; hypothetical protein complement(3623312..3623794) Mycobacterium smegmatis str. MC2 155 4532588 YP_887866.1 CDS MSMEG_3563 NC_008596.1 3623967 3626027 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; drug transporter complement(3623967..3626027) Mycobacterium smegmatis str. MC2 155 4533478 YP_887867.1 CDS bfr NC_008596.1 3626184 3626669 R identified by match to protein family HMM PF00210; match to protein family HMM TIGR00754; bacterioferritin complement(3626184..3626669) Mycobacterium smegmatis str. MC2 155 4532688 YP_887868.1 CDS MSMEG_3565 NC_008596.1 3626894 3627010 R hypothetical protein complement(3626894..3627010) Mycobacterium smegmatis str. MC2 155 4534467 YP_887869.1 CDS MSMEG_3566 NC_008596.1 3626921 3627553 D FadD16 protein 3626921..3627553 Mycobacterium smegmatis str. MC2 155 4532219 YP_887870.1 CDS MSMEG_3568 NC_008596.1 3627559 3627768 D identified by match to protein family HMM PF04324; hypothetical protein 3627559..3627768 Mycobacterium smegmatis str. MC2 155 4536292 YP_887871.1 CDS MSMEG_3567 NC_008596.1 3627765 3628532 R identified by match to protein family HMM PF00378; enoyl-CoA hydratase complement(3627765..3628532) Mycobacterium smegmatis str. MC2 155 4534484 YP_887872.1 CDS MSMEG_3569 NC_008596.1 3628592 3629335 R hypothetical protein complement(3628592..3629335) Mycobacterium smegmatis str. MC2 155 4534152 YP_887873.1 CDS MSMEG_3570 NC_008596.1 3629411 3631426 D identified by match to protein family HMM PF05976; hypothetical protein 3629411..3631426 Mycobacterium smegmatis str. MC2 155 4532004 YP_887874.1 CDS MSMEG_3571 NC_008596.1 3631442 3632071 R identified by match to protein family HMM PF03061; thioesterase complement(3631442..3632071) Mycobacterium smegmatis str. MC2 155 4537061 YP_887875.1 CDS MSMEG_3572 NC_008596.1 3632220 3632795 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 3632220..3632795 Mycobacterium smegmatis str. MC2 155 4533225 YP_887876.1 CDS MSMEG_3573 NC_008596.1 3632831 3633964 D integral membrane protein 3632831..3633964 Mycobacterium smegmatis str. MC2 155 4535342 YP_887877.1 CDS MSMEG_3574 NC_008596.1 3633987 3635588 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721; hypothetical protein 3633987..3635588 Mycobacterium smegmatis str. MC2 155 4536519 YP_887878.1 CDS MSMEG_3575 NC_008596.1 3635643 3636122 D identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase 3635643..3636122 Mycobacterium smegmatis str. MC2 155 4536122 YP_887879.1 CDS MSMEG_3576 NC_008596.1 3636119 3637426 D identified by match to protein family HMM PF00128; alpha-amylase 3636119..3637426 Mycobacterium smegmatis str. MC2 155 4535686 YP_887880.1 CDS MSMEG_3577 NC_008596.1 3637429 3637878 R calpastatin complement(3637429..3637878) Mycobacterium smegmatis str. MC2 155 4533653 YP_887881.1 CDS MSMEG_3578 NC_008596.1 3638039 3640156 D identified by match to protein family HMM PF00211; match to protein family HMM PF00672; cyclase 3638039..3640156 Mycobacterium smegmatis str. MC2 155 4537598 YP_887882.1 CDS MSMEG_3579 NC_008596.1 3640153 3641547 D identified by match to protein family HMM PF00027; match to protein family HMM PF00924; transmembrane protein 3640153..3641547 Mycobacterium smegmatis str. MC2 155 4537361 YP_887883.1 CDS MSMEG_3580 NC_008596.1 3641776 3642765 D identified by match to protein family HMM PF00756; antigen 85-C 3641776..3642765 Mycobacterium smegmatis str. MC2 155 4534020 YP_887884.1 CDS MSMEG_3581 NC_008596.1 3642828 3643589 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; FabG protein complement(3642828..3643589) Mycobacterium smegmatis str. MC2 155 4530980 YP_887885.1 CDS lon NC_008596.1 3643729 3646068 D identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07726; match to protein family HMM PF07728; match to protein family HMM TIGR00763; ATP-dependent protease La 3643729..3646068 Mycobacterium smegmatis str. MC2 155 4531404 YP_887886.1 CDS MSMEG_3583 NC_008596.1 3646220 3647224 D identified by match to protein family HMM PF00296; monooxygenase 3646220..3647224 Mycobacterium smegmatis str. MC2 155 4534976 YP_887887.1 CDS MSMEG_3584 NC_008596.1 3647366 3650245 R identified by match to protein family HMM PF03176; membrane protein, MmpL family protein complement(3647366..3650245) Mycobacterium smegmatis str. MC2 155 4534427 YP_887888.1 CDS MSMEG_3585 NC_008596.1 3650224 3650718 R identified by match to protein family HMM PF05423; MmpS2 protein complement(3650224..3650718) Mycobacterium smegmatis str. MC2 155 4533887 YP_887889.1 CDS MSMEG_3586 NC_008596.1 3650839 3652161 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator family protein transporter complement(3650839..3652161) Mycobacterium smegmatis str. MC2 155 4531480 YP_887890.1 CDS MSMEG_3587 NC_008596.1 3652441 3653880 D identified by match to protein family HMM PF00324; D-serine/D-alanine/glycine transporter 3652441..3653880 Mycobacterium smegmatis str. MC2 155 4531227 YP_887891.1 CDS MSMEG_3588 NC_008596.1 3653933 3654058 D hypothetical protein 3653933..3654058 Mycobacterium smegmatis str. MC2 155 4530819 YP_887892.1 CDS MSMEG_3589 NC_008596.1 3654084 3654329 D hypothetical protein 3654084..3654329 Mycobacterium smegmatis str. MC2 155 4532505 YP_887893.1 CDS MSMEG_3590 NC_008596.1 3654331 3655206 D hypothetical protein 3654331..3655206 Mycobacterium smegmatis str. MC2 155 4533163 YP_887894.1 CDS MSMEG_3591 NC_008596.1 3655206 3655454 D hypothetical protein 3655206..3655454 Mycobacterium smegmatis str. MC2 155 4537158 YP_887895.1 CDS MSMEG_3592 NC_008596.1 3655466 3656092 D hypothetical protein 3655466..3656092 Mycobacterium smegmatis str. MC2 155 4534968 YP_887896.1 CDS MSMEG_3593 NC_008596.1 3656099 3656827 D identified by match to protein family HMM PF01904; hypothetical protein 3656099..3656827 Mycobacterium smegmatis str. MC2 155 4537445 YP_887897.1 CDS MSMEG_3594 NC_008596.1 3656839 3658068 D identified by match to protein family HMM PF00070; match to protein family HMM PF07992; anthranilate dioxygenase reductase 3656839..3658068 Mycobacterium smegmatis str. MC2 155 4531006 YP_887898.1 CDS MSMEG_3595 NC_008596.1 3658215 3658883 D hypothetical protein 3658215..3658883 Mycobacterium smegmatis str. MC2 155 4534439 YP_887899.1 CDS MSMEG_3596 NC_008596.1 3658883 3662089 D ATPase 3658883..3662089 Mycobacterium smegmatis str. MC2 155 4536065 YP_887900.1 CDS MSMEG_3597 NC_008596.1 3661633 3662124 D hypothetical protein 3661633..3662124 Mycobacterium smegmatis str. MC2 155 4533144 YP_887901.1 CDS MSMEG_3598 NC_008596.1 3662144 3663193 R identified by match to protein family HMM PF00532; periplasmic sugar-binding proteins complement(3662144..3663193) Mycobacterium smegmatis str. MC2 155 4532198 YP_887902.1 CDS MSMEG_3600 NC_008596.1 3662792 3663292 D hypothetical protein 3662792..3663292 Mycobacterium smegmatis str. MC2 155 4536662 YP_887903.1 CDS MSMEG_3599 NC_008596.1 3663228 3664277 R identified by match to protein family HMM PF00532; LacI family transcriptional regulator complement(3663228..3664277) Mycobacterium smegmatis str. MC2 155 4537355 YP_887904.1 CDS MSMEG_3601 NC_008596.1 3664319 3665353 R identified by match to protein family HMM PF02653; ribose/xylose/arabinose/galactoside ABC-type transport systems, permeases complement(3664319..3665353) Mycobacterium smegmatis str. MC2 155 4530812 YP_887905.1 CDS MSMEG_3602 NC_008596.1 3665350 3666888 R identified by match to protein family HMM PF00005; ribose transport ATP-binding protein RbsA complement(3665350..3666888) Mycobacterium smegmatis str. MC2 155 4533304 YP_887906.1 CDS MSMEG_3603 NC_008596.1 3666885 3667931 R identified by match to protein family HMM PF00107; oxidoreductase, zinc-binding dehydrogenase complement(3666885..3667931) Mycobacterium smegmatis str. MC2 155 4533184 YP_887907.1 CDS MSMEG_3604 NC_008596.1 3667925 3668692 R identified by match to protein family HMM PF00106; sorbitol utilization protein SOU2 complement(3667925..3668692) Mycobacterium smegmatis str. MC2 155 4534143 YP_887908.1 CDS MSMEG_3605 NC_008596.1 3668719 3669759 R identified by match to protein family HMM PF00107; sorbitol dehydrogenase complement(3668719..3669759) Mycobacterium smegmatis str. MC2 155 4533707 YP_887909.1 CDS MSMEG_3606 NC_008596.1 3669958 3670938 D identified by match to protein family HMM PF04198; transcriptional regulator 3669958..3670938 Mycobacterium smegmatis str. MC2 155 4531771 YP_887910.1 CDS MSMEG_3607 NC_008596.1 3670935 3671717 D identified by match to protein family HMM PF00106; short chain dehydrogenase 3670935..3671717 Mycobacterium smegmatis str. MC2 155 4530856 YP_887911.1 CDS MSMEG_3608 NC_008596.1 3671734 3673200 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(3671734..3673200) Mycobacterium smegmatis str. MC2 155 4536627 YP_887912.1 CDS MSMEG_3610 NC_008596.1 3672598 3673341 D hypothetical protein 3672598..3673341 Mycobacterium smegmatis str. MC2 155 4532942 YP_887913.1 CDS MSMEG_3609 NC_008596.1 3673257 3674240 R identified by match to protein family HMM PF00296; hydride transferase 1 complement(3673257..3674240) Mycobacterium smegmatis str. MC2 155 4534161 YP_887914.1 CDS xfp NC_008596.1 3674267 3676639 D identified by match to protein family HMM PF03894; phosphoketolase 3674267..3676639 Mycobacterium smegmatis str. MC2 155 4530926 YP_887915.1 CDS MSMEG_3612 NC_008596.1 3676719 3677468 D identified by match to protein family HMM PF02517; integral membrane protein 3676719..3677468 Mycobacterium smegmatis str. MC2 155 4532122 YP_887916.1 CDS MSMEG_3613 NC_008596.1 3677470 3678081 R identified by match to protein family HMM PF07336; hypothetical protein complement(3677470..3678081) Mycobacterium smegmatis str. MC2 155 4534687 YP_887917.1 CDS MSMEG_3614 NC_008596.1 3678199 3678690 D hypothetical protein 3678199..3678690 Mycobacterium smegmatis str. MC2 155 4532746 YP_887918.1 CDS MSMEG_3615 NC_008596.1 3678705 3679718 R identified by match to protein family HMM PF00107; match to protein family HMM TIGR02822; zinc-binding alcohol dehydrogenase complement(3678705..3679718) Mycobacterium smegmatis str. MC2 155 4537739 YP_887919.1 CDS MSMEG_3616 NC_008596.1 3679739 3680041 R identified by match to protein family HMM PF04226; integral membrane protein complement(3679739..3680041) Mycobacterium smegmatis str. MC2 155 4537716 YP_887920.1 CDS MSMEG_3617 NC_008596.1 3680523 3680780 D hypothetical protein 3680523..3680780 Mycobacterium smegmatis str. MC2 155 4534760 YP_887921.1 CDS MSMEG_3618 NC_008596.1 3680844 3681905 R identified by match to protein family HMM PF07174; hypothetical protein complement(3680844..3681905) Mycobacterium smegmatis str. MC2 155 4537593 YP_887922.1 CDS MSMEG_3619 NC_008596.1 3682273 3682944 D short chain dehydrogenase 3682273..3682944 Mycobacterium smegmatis str. MC2 155 4536965 YP_887923.1 CDS MSMEG_3620 NC_008596.1 3682967 3683896 D identified by match to protein family HMM PF00296; hypothetical protein 3682967..3683896 Mycobacterium smegmatis str. MC2 155 4532301 YP_887924.1 CDS ndh NC_008596.1 3683996 3685369 D identified by similarity to GB:AAC46302.1; match to protein family HMM PF00070; match to protein family HMM PF07992; NADH dehydrogenase 3683996..3685369 Mycobacterium smegmatis str. MC2 155 4531957 YP_887925.1 CDS MSMEG_3622 NC_008596.1 3685389 3686027 R hypothetical protein complement(3685389..3686027) Mycobacterium smegmatis str. MC2 155 4536723 YP_887926.1 CDS ureG NC_008596.1 3686027 3686713 R identified by match to protein family HMM PF02492; match to protein family HMM TIGR00101; urease accessory protein UreG complement(3686027..3686713) Mycobacterium smegmatis str. MC2 155 4535212 YP_887927.1 CDS MSMEG_3624 NC_008596.1 3686744 3687379 R urease accessory protein uref complement(3686744..3687379) Mycobacterium smegmatis str. MC2 155 4533356 YP_887928.1 CDS ureC NC_008596.1 3687380 3689113 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha complement(3687380..3689113) Mycobacterium smegmatis str. MC2 155 4531430 YP_887929.1 CDS ureB NC_008596.1 3689113 3689442 R identified by match to protein family HMM PF00699; match to protein family HMM TIGR00192; urease subunit beta complement(3689113..3689442) Mycobacterium smegmatis str. MC2 155 4535370 YP_887930.1 CDS ureA NC_008596.1 3689452 3689754 R UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma complement(3689452..3689754) Mycobacterium smegmatis str. MC2 155 4531860 YP_887931.1 CDS MSMEG_3628 NC_008596.1 3689837 3690232 R identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; ComA operon protein 2 complement(3689837..3690232) Mycobacterium smegmatis str. MC2 155 4532133 YP_887932.1 CDS MSMEG_3629 NC_008596.1 3690396 3691169 R hypothetical protein complement(3690396..3691169) Mycobacterium smegmatis str. MC2 155 4537037 YP_887933.1 CDS MSMEG_3630 NC_008596.1 3691404 3691811 D identified by match to protein family HMM PF03965; CopY family transcriptional regulator protein 3691404..3691811 Mycobacterium smegmatis str. MC2 155 4536688 YP_887934.1 CDS MSMEG_3631 NC_008596.1 3691826 3692782 D identified by match to protein family HMM PF01435; match to protein family HMM PF05569; integral membrane protein 3691826..3692782 Mycobacterium smegmatis str. MC2 155 4537551 YP_887935.1 CDS gnd NC_008596.1 3692833 3694299 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 3692833..3694299 Mycobacterium smegmatis str. MC2 155 4531569 YP_887936.1 CDS MSMEG_3634 NC_008596.1 3694314 3695750 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5-monophosphate dehydrogenase 3694314..3695750 Mycobacterium smegmatis str. MC2 155 4532664 YP_887937.1 CDS MSMEG_3633 NC_008596.1 3695733 3696785 R identified by match to protein family HMM PF00005; ferric cations import ATP-binding protein FbpC complement(3695733..3696785) Mycobacterium smegmatis str. MC2 155 4534940 YP_887938.1 CDS MSMEG_3635 NC_008596.1 3696787 3698292 R identified by match to protein family HMM PF00528; iron(III)-transporter permease SfuB complement(3696787..3698292) Mycobacterium smegmatis str. MC2 155 4536941 YP_887939.1 CDS MSMEG_3636 NC_008596.1 3698337 3699386 R identified by match to protein family HMM PF01547; ABC transporter ferric iron-binding periplasmic protein complement(3698337..3699386) Mycobacterium smegmatis str. MC2 155 4531183 YP_887940.1 CDS MSMEG_3637 NC_008596.1 3699761 3701146 D identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; hypothetical protein 3699761..3701146 Mycobacterium smegmatis str. MC2 155 4537745 YP_887941.1 CDS MSMEG_3638 NC_008596.1 3701139 3702233 D identified by match to protein family HMM PF00571; match to protein family HMM PF01595; hypothetical protein 3701139..3702233 Mycobacterium smegmatis str. MC2 155 4534876 YP_887942.1 CDS MSMEG_3639 NC_008596.1 3702226 3703254 D hypothetical protein 3702226..3703254 Mycobacterium smegmatis str. MC2 155 4532533 YP_887943.1 CDS glcB NC_008596.1 3703284 3705449 D catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 3703284..3705449 Mycobacterium smegmatis str. MC2 155 4537600 YP_887944.1 CDS MSMEG_3641 NC_008596.1 3705497 3707785 D hypothetical protein 3705497..3707785 Mycobacterium smegmatis str. MC2 155 4536317 YP_887945.1 CDS gcvP NC_008596.1 3707851 3710691 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(3707851..3710691) Mycobacterium smegmatis str. MC2 155 4537548 YP_887946.1 CDS MSMEG_3643 NC_008596.1 3710692 3710910 D hypothetical protein 3710692..3710910 Mycobacterium smegmatis str. MC2 155 4534367 YP_887947.1 CDS MSMEG_3644 NC_008596.1 3711023 3711610 R MerR family transcriptional regulator complement(3711023..3711610) Mycobacterium smegmatis str. MC2 155 4537262 YP_887948.1 CDS MSMEG_3645 NC_008596.1 3711891 3712385 R identified by match to protein family HMM PF02577; hypothetical protein complement(3711891..3712385) Mycobacterium smegmatis str. MC2 155 4534064 YP_887949.1 CDS MSMEG_3646 NC_008596.1 3712479 3713243 R identified by match to protein family HMM PF00376; MerR family transcriptional regulator complement(3712479..3713243) Mycobacterium smegmatis str. MC2 155 4533498 YP_887950.1 CDS MSMEG_3647 NC_008596.1 3713279 3713710 R identified by match to protein family HMM PF00498; forkhead-associated protein complement(3713279..3713710) Mycobacterium smegmatis str. MC2 155 4536307 YP_887951.1 CDS gcvH NC_008596.1 3713932 3714327 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(3713932..3714327) Mycobacterium smegmatis str. MC2 155 4534014 YP_887952.1 CDS MSMEG_3649 NC_008596.1 3714350 3715183 R identified by match to protein family HMM PF05949; hypothetical protein complement(3714350..3715183) Mycobacterium smegmatis str. MC2 155 4532733 YP_887953.1 CDS MSMEG_3650 NC_008596.1 3715210 3715542 R identified by match to protein family HMM PF06947; integral membrane protein complement(3715210..3715542) Mycobacterium smegmatis str. MC2 155 4536885 YP_887954.1 CDS MSMEG_3651 NC_008596.1 3715572 3716495 R identified by match to protein family HMM PF05949; membrane associated protein complement(3715572..3716495) Mycobacterium smegmatis str. MC2 155 4537524 YP_887955.1 CDS MSMEG_3653 NC_008596.1 3716443 3717138 D hypothetical protein 3716443..3717138 Mycobacterium smegmatis str. MC2 155 4534520 YP_887956.1 CDS MSMEG_3652 NC_008596.1 3716506 3717096 R identified by match to protein family HMM PF01066; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(3716506..3717096) Mycobacterium smegmatis str. MC2 155 4537509 YP_887957.1 CDS azi NC_008596.1 3717156 3719510 R SecA2; functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond to SecA2; which is non-essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(3717156..3719510) Mycobacterium smegmatis str. MC2 155 4534253 YP_887958.1 CDS MSMEG_3655 NC_008596.1 3719609 3721534 D identified by match to protein family HMM PF00005; match to protein family HMM PF06472; ABC transporter permease 3719609..3721534 Mycobacterium smegmatis str. MC2 155 4537212 YP_887959.1 CDS MSMEG_3656 NC_008596.1 3721548 3723488 D identified by match to protein family HMM PF00005; match to protein family HMM PF06472; ABC transporter permease 3721548..3723488 Mycobacterium smegmatis str. MC2 155 4534053 YP_887960.1 CDS MSMEG_3657 NC_008596.1 3723502 3725001 R identified by match to protein family HMM PF00890; match to protein family HMM PF01266; hypothetical protein complement(3723502..3725001) Mycobacterium smegmatis str. MC2 155 4532908 YP_887961.1 CDS MSMEG_3658 NC_008596.1 3724998 3725492 R hypothetical protein complement(3724998..3725492) Mycobacterium smegmatis str. MC2 155 4533011 YP_887962.1 CDS MSMEG_3659 NC_008596.1 3725537 3726226 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(3725537..3726226) Mycobacterium smegmatis str. MC2 155 4536051 YP_887963.1 CDS MSMEG_3660 NC_008596.1 3726341 3726784 D hypothetical protein 3726341..3726784 Mycobacterium smegmatis str. MC2 155 4531452 YP_887964.1 CDS MSMEG_3661 NC_008596.1 3726804 3727496 R hypothetical protein complement(3726804..3727496) Mycobacterium smegmatis str. MC2 155 4532059 YP_887965.1 CDS MSMEG_3662 NC_008596.1 3727672 3728298 R identified by match to protein family HMM PF01453; match to protein family HMM PF01476; mannose-binding lectin complement(3727672..3728298) Mycobacterium smegmatis str. MC2 155 4535902 YP_887966.1 CDS MSMEG_3663 NC_008596.1 3728448 3729863 R identified by match to protein family HMM PF01266; oxidoreductase complement(3728448..3729863) Mycobacterium smegmatis str. MC2 155 4537207 YP_887967.1 CDS MSMEG_3664 NC_008596.1 3729915 3731060 R identified by match to protein family HMM PF00999; transporter monovalent cation:proton antiporter-2 (CPA2) family protein complement(3729915..3731060) Mycobacterium smegmatis str. MC2 155 4532443 YP_887968.1 CDS MSMEG_3665 NC_008596.1 3731063 3731569 R identified by match to protein family HMM PF02080; TrkA domain-containing protein complement(3731063..3731569) Mycobacterium smegmatis str. MC2 155 4533757 YP_887969.1 CDS MSMEG_3666 NC_008596.1 3731597 3732520 R C-5 sterol desaturase complement(3731597..3732520) Mycobacterium smegmatis str. MC2 155 4532103 YP_887970.1 CDS MSMEG_3667 NC_008596.1 3732542 3734104 R identified by match to protein family HMM PF00135; para-nitrobenzyl esterase complement(3732542..3734104) Mycobacterium smegmatis str. MC2 155 4537003 YP_887971.1 CDS MSMEG_3668 NC_008596.1 3734280 3735554 D identified by match to protein family HMM PF08028; acyl-CoA dehydrogenase 3734280..3735554 Mycobacterium smegmatis str. MC2 155 4535352 YP_887972.1 CDS MSMEG_3669 NC_008596.1 3735585 3736673 D hypothetical protein 3735585..3736673 Mycobacterium smegmatis str. MC2 155 4531232 YP_887973.1 CDS MSMEG_3670 NC_008596.1 3736700 3737035 D identified by similarity to SP:Q57225; match to protein family HMM PF00893; transporter small multidrug resistance (SMR) family protein 3736700..3737035 Mycobacterium smegmatis str. MC2 155 4534807 YP_887974.1 CDS MSMEG_3672 NC_008596.1 3737032 3737358 D identified by similarity to SP:Q57225; match to protein family HMM PF00893; transporter small multidrug resistance (SMR) family protein 3737032..3737358 Mycobacterium smegmatis str. MC2 155 4535061 YP_887975.1 CDS MSMEG_3671 NC_008596.1 3737317 3738537 R identified by match to protein family HMM PF07690; integral membrane protein complement(3737317..3738537) Mycobacterium smegmatis str. MC2 155 4536699 YP_887976.1 CDS malQ NC_008596.1 3738781 3740985 D identified by match to protein family HMM PF02446; match to protein family HMM TIGR00217; 4-alpha-glucanotransferase 3738781..3740985 Mycobacterium smegmatis str. MC2 155 4531000 YP_887977.1 CDS MSMEG_3674 NC_008596.1 3741065 3741475 D hypothetical protein 3741065..3741475 Mycobacterium smegmatis str. MC2 155 4537448 YP_887978.1 CDS MSMEG_3675 NC_008596.1 3741641 3742540 D metal-dependent hydrolase 3741641..3742540 Mycobacterium smegmatis str. MC2 155 4536077 YP_887979.1 CDS MSMEG_3676 NC_008596.1 3742546 3743655 D identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; phenoxybenzoate dioxygenase subunit beta 3742546..3743655 Mycobacterium smegmatis str. MC2 155 4535021 YP_887980.1 CDS MSMEG_3677 NC_008596.1 3743679 3745160 D identified by match to protein family HMM PF00069; serine/threonine protein kinase 3743679..3745160 Mycobacterium smegmatis str. MC2 155 4532412 YP_887981.1 CDS MSMEG_3678 NC_008596.1 3745516 3745836 D hypothetical protein 3745516..3745836 Mycobacterium smegmatis str. MC2 155 4536456 YP_887982.1 CDS MSMEG_3679 NC_008596.1 3746175 3746669 R identified by match to protein family HMM PF00293; phosphohydrolase complement(3746175..3746669) Mycobacterium smegmatis str. MC2 155 4532420 YP_887983.1 CDS MSMEG_3680 NC_008596.1 3746956 3747261 D hypothetical protein 3746956..3747261 Mycobacterium smegmatis str. MC2 155 4533332 YP_887984.1 CDS MSMEG_3682 NC_008596.1 3747389 3748171 D identified by match to protein family HMM PF00657; hypothetical protein 3747389..3748171 Mycobacterium smegmatis str. MC2 155 4537459 YP_887985.1 CDS MSMEG_3681 NC_008596.1 3748168 3748584 R identified by match to protein family HMM PF05305; hypothetical protein complement(3748168..3748584) Mycobacterium smegmatis str. MC2 155 4536356 YP_887986.1 CDS MSMEG_3683 NC_008596.1 3748660 3749223 R hypothetical protein complement(3748660..3749223) Mycobacterium smegmatis str. MC2 155 4534354 YP_887987.1 CDS MSMEG_3684 NC_008596.1 3749291 3750151 R identified by match to protein family HMM PF02136; steroid delta-isomerase complement(3749291..3750151) Mycobacterium smegmatis str. MC2 155 4533056 YP_887988.1 CDS MSMEG_3685 NC_008596.1 3750230 3750661 D hypothetical protein 3750230..3750661 Mycobacterium smegmatis str. MC2 155 4537638 YP_887989.1 CDS MSMEG_3686 NC_008596.1 3750763 3751188 D hypothetical protein 3750763..3751188 Mycobacterium smegmatis str. MC2 155 4537477 YP_887990.1 CDS MSMEG_3687 NC_008596.1 3751261 3752916 D activates fatty acids by binding to coenzyme A; in Mycobacterium may be involved in virulence; acyl-CoA synthetase 3751261..3752916 Mycobacterium smegmatis str. MC2 155 4537442 YP_887991.1 CDS MSMEG_3688 NC_008596.1 3752918 3753229 R hypothetical protein complement(3752918..3753229) Mycobacterium smegmatis str. MC2 155 4531105 YP_887992.1 CDS MSMEG_3689 NC_008596.1 3753243 3754973 R identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; sodium:solute symporter complement(3753243..3754973) Mycobacterium smegmatis str. MC2 155 4535107 YP_887993.1 CDS galT NC_008596.1 3755928 3757010 D identified by match to protein family HMM PF01087; match to protein family HMM PF02744; match to protein family HMM TIGR00209; galactose-1-phosphate uridylyltransferase 3755928..3757010 Mycobacterium smegmatis str. MC2 155 4534530 YP_887994.1 CDS galK NC_008596.1 3757013 3758101 D catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 3757013..3758101 Mycobacterium smegmatis str. MC2 155 4534228 YP_887995.1 CDS MSMEG_3693 NC_008596.1 3758177 3759400 R identified by match to protein family HMM PF00067; cytochrome P450 monooxygenase complement(3758177..3759400) Mycobacterium smegmatis str. MC2 155 4535311 YP_887996.1 CDS MSMEG_3694 NC_008596.1 3759496 3760995 D identified by match to protein family HMM PF00501; feruloyl-CoA synthetase 3759496..3760995 Mycobacterium smegmatis str. MC2 155 4536452 YP_887997.1 CDS MSMEG_3695 NC_008596.1 3761143 3761553 D hypothetical protein 3761143..3761553 Mycobacterium smegmatis str. MC2 155 4534594 YP_887998.1 CDS MSMEG_3696 NC_008596.1 3761653 3762354 D identified by similarity to GP:150004; match to protein family HMM PF07929; IS1096, tnpR protein 3761653..3762354 Mycobacterium smegmatis str. MC2 155 4532997 YP_887999.1 CDS MSMEG_3697 NC_008596.1 3762362 3763684 R identified by similarity to GP:150005; match to protein family HMM PF01610; IS1096, tnpA protein complement(3762362..3763684) Mycobacterium smegmatis str. MC2 155 4534999 YP_888000.1 CDS MSMEG_3698 NC_008596.1 3763403 3763897 D hypothetical protein 3763403..3763897 Mycobacterium smegmatis str. MC2 155 4532498 YP_888001.1 CDS MSMEG_3699 NC_008596.1 3763858 3763968 D hypothetical protein 3763858..3763968 Mycobacterium smegmatis str. MC2 155 4537719 YP_888002.1 CDS MSMEG_3700 NC_008596.1 3763971 3765302 D identified by match to protein family HMM TIGR01413; peroxidase 3763971..3765302 Mycobacterium smegmatis str. MC2 155 4532347 YP_888003.1 CDS MSMEG_3701 NC_008596.1 3765299 3766309 D hypothetical protein 3765299..3766309 Mycobacterium smegmatis str. MC2 155 4534803 YP_888004.1 CDS MSMEG_3703 NC_008596.1 3766881 3767561 D hypothetical protein 3766881..3767561 Mycobacterium smegmatis str. MC2 155 4533272 YP_888005.1 CDS MSMEG_3704 NC_008596.1 3767728 3768630 D identified by match to protein family HMM PF01370; 3-alpha-hydroxysteroid dehydrogenase 3767728..3768630 Mycobacterium smegmatis str. MC2 155 4537676 YP_888006.1 CDS MSMEG_3705 NC_008596.1 3768650 3769939 D identified by match to protein family HMM PF07690; major facilitator superfamily protein 3768650..3769939 Mycobacterium smegmatis str. MC2 155 4537168 YP_888007.1 CDS aceA NC_008596.1 3770113 3772422 D identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346; isocitrate lyase 3770113..3772422 Mycobacterium smegmatis str. MC2 155 4533494 YP_888008.1 CDS MSMEG_3707 NC_008596.1 3772431 3773042 D hypothetical protein 3772431..3773042 Mycobacterium smegmatis str. MC2 155 4534453 YP_888009.1 CDS MSMEG_3708 NC_008596.1 3773112 3774191 D identified by match to protein family HMM PF00199; catalase 3773112..3774191 Mycobacterium smegmatis str. MC2 155 4534153 YP_888010.1 CDS MSMEG_3710 NC_008596.1 3774188 3774766 D identified by match to protein family HMM PF01292; cytochrome b561 family protein 3774188..3774766 Mycobacterium smegmatis str. MC2 155 4532608 YP_888011.1 CDS MSMEG_3709 NC_008596.1 3774749 3776077 R hypothetical protein complement(3774749..3776077) Mycobacterium smegmatis str. MC2 155 4531108 YP_888012.1 CDS MSMEG_3711 NC_008596.1 3776153 3776272 R hypothetical protein complement(3776153..3776272) Mycobacterium smegmatis str. MC2 155 4531478 YP_888013.1 CDS MSMEG_3712 NC_008596.1 3776285 3776467 D hypothetical protein 3776285..3776467 Mycobacterium smegmatis str. MC2 155 4536472 YP_888014.1 CDS MSMEG_3713 NC_008596.1 3776635 3777081 D hypothetical protein 3776635..3777081 Mycobacterium smegmatis str. MC2 155 4535815 YP_888015.1 CDS MSMEG_3714 NC_008596.1 3777183 3777833 D hypothetical protein 3777183..3777833 Mycobacterium smegmatis str. MC2 155 4533005 YP_888016.1 CDS MSMEG_3715 NC_008596.1 3778220 3785944 D identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733; match to protein family HMM TIGR01746; linear gramicidin synthetase subunit C 3778220..3785944 Mycobacterium smegmatis str. MC2 155 4533079 YP_888017.1 CDS MSMEG_3716 NC_008596.1 3786107 3786208 D hypothetical protein 3786107..3786208 Mycobacterium smegmatis str. MC2 155 4533578 YP_888018.1 CDS MSMEG_3718 NC_008596.1 3787202 3787639 D identified by match to protein family HMM PF06803; hypothetical protein 3787202..3787639 Mycobacterium smegmatis str. MC2 155 4534181 YP_888019.1 CDS MSMEG_3719 NC_008596.1 3787674 3788843 R identified by match to protein family HMM PF01699; sodium/calcium exchanger protein complement(3787674..3788843) Mycobacterium smegmatis str. MC2 155 4537460 YP_888020.1 CDS MSMEG_3720 NC_008596.1 3788855 3789061 R recombination activating protein 1 complement(3788855..3789061) Mycobacterium smegmatis str. MC2 155 4534048 YP_888021.1 CDS pqqE NC_008596.1 3789058 3790188 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR02109; pyrroloquinoline quinone biosynthesis protein PqqE complement(3789058..3790188) Mycobacterium smegmatis str. MC2 155 4535542 YP_888022.1 CDS MSMEG_3722 NC_008596.1 3790181 3790459 R identified by match to protein family HMM PF05402; bifunctional coenzyme PQQ synthesis protein C/D complement(3790181..3790459) Mycobacterium smegmatis str. MC2 155 4536180 YP_888023.1 CDS pqqC NC_008596.1 3790446 3791162 R Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC complement(3790446..3791162) Mycobacterium smegmatis str. MC2 155 4535189 YP_888024.1 CDS pqqB NC_008596.1 3791172 3792074 R possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB complement(3791172..3792074) Mycobacterium smegmatis str. MC2 155 4535105 YP_888025.1 CDS pqqA NC_008596.1 3792156 3792269 R identified by match to protein family HMM TIGR02107; coenzyme PQQ biosynthesis protein A complement(3792156..3792269) Mycobacterium smegmatis str. MC2 155 4531041 YP_888026.1 CDS MSMEG_3726 NC_008596.1 3792319 3794004 R identified by match to protein family HMM PF01011; match to protein family HMM TIGR03075; alcohol dehydrogenase complement(3792319..3794004) Mycobacterium smegmatis str. MC2 155 4532965 YP_888027.1 CDS MSMEG_3727 NC_008596.1 3794018 3794488 R hypothetical protein complement(3794018..3794488) Mycobacterium smegmatis str. MC2 155 4537641 YP_888028.1 CDS MSMEG_3728 NC_008596.1 3794524 3794658 D hypothetical protein 3794524..3794658 Mycobacterium smegmatis str. MC2 155 4533053 YP_888029.1 CDS katG NC_008596.1 3794904 3796970 R identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198; catalase/peroxidase HPI complement(3794904..3796970) Mycobacterium smegmatis str. MC2 155 4536221 YP_888030.1 CDS MSMEG_3730 NC_008596.1 3797154 3798542 R identified by match to protein family HMM PF04397; Fis family transcriptional regulator complement(3797154..3798542) Mycobacterium smegmatis str. MC2 155 4537122 YP_888031.1 CDS MSMEG_3731 NC_008596.1 3798739 3799824 R identified by match to protein family HMM PF01244; dipeptidase 2 complement(3798739..3799824) Mycobacterium smegmatis str. MC2 155 4537740 YP_888032.1 CDS MSMEG_3732 NC_008596.1 3799807 3799917 D hypothetical protein 3799807..3799917 Mycobacterium smegmatis str. MC2 155 4534845 YP_888033.1 CDS MSMEG_3733 NC_008596.1 3800054 3800311 R hypothetical protein complement(3800054..3800311) Mycobacterium smegmatis str. MC2 155 4531996 YP_888034.1 CDS MSMEG_3735 NC_008596.1 3800703 3801659 R identified by match to protein family HMM PF01925; hypothetical protein complement(3800703..3801659) Mycobacterium smegmatis str. MC2 155 4532577 YP_888035.1 CDS MSMEG_3736 NC_008596.1 3801719 3801829 R hypothetical protein complement(3801719..3801829) Mycobacterium smegmatis str. MC2 155 4533550 YP_888036.1 CDS MSMEG_3737 NC_008596.1 3801921 3802703 R identified by match to protein family HMM PF01925; integral membrane protein complement(3801921..3802703) Mycobacterium smegmatis str. MC2 155 4532552 YP_888037.1 CDS engA NC_008596.1 3802774 3804189 R synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(3802774..3804189) Mycobacterium smegmatis str. MC2 155 4534164 YP_888038.1 CDS cmk NC_008596.1 3804186 3804872 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(3804186..3804872) Mycobacterium smegmatis str. MC2 155 4534682 YP_888039.1 CDS rluB NC_008596.1 3804869 3805612 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase B complement(3804869..3805612) Mycobacterium smegmatis str. MC2 155 4534308 YP_888040.1 CDS MSMEG_3741 NC_008596.1 3805614 3806444 R identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281; transcriptional regulator complement(3805614..3806444) Mycobacterium smegmatis str. MC2 155 4532807 YP_888041.1 CDS scpA NC_008596.1 3806453 3807355 R identified by match to protein family HMM PF02616; segregation and condensation protein A complement(3806453..3807355) Mycobacterium smegmatis str. MC2 155 4535832 YP_888042.1 CDS soj NC_008596.1 3807352 3808185 R identified by match to protein family HMM PF01656; SpoOJ regulator protein complement(3807352..3808185) Mycobacterium smegmatis str. MC2 155 4534937 YP_888043.1 CDS xerD NC_008596.1 3808346 3809302 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD complement(3808346..3809302) Mycobacterium smegmatis str. MC2 155 4535827 YP_888044.1 CDS MSMEG_3745 NC_008596.1 3809299 3809919 R identified by match to protein family HMM PF00293; MutT/nudix family protein complement(3809299..3809919) Mycobacterium smegmatis str. MC2 155 4533354 YP_888045.1 CDS pyrG NC_008596.1 3809912 3811684 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(3809912..3811684) Mycobacterium smegmatis str. MC2 155 4531438 YP_888046.1 CDS MSMEG_3748 NC_008596.1 3812765 3813961 R thiamin pyrophosphokinase catalytic subunit complement(3812765..3813961) Mycobacterium smegmatis str. MC2 155 4537297 YP_888047.1 CDS ppnK NC_008596.1 3815858 3816781 R catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase complement(3815858..3816781) Mycobacterium smegmatis str. MC2 155 4534375 YP_888048.1 CDS MSMEG_3751 NC_008596.1 3816778 3817587 R identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478; hemolysin A complement(3816778..3817587) Mycobacterium smegmatis str. MC2 155 4530874 YP_888049.1 CDS MSMEG_3752 NC_008596.1 3817594 3817800 R hypothetical protein complement(3817594..3817800) Mycobacterium smegmatis str. MC2 155 4535920 YP_888050.1 CDS MSMEG_3753 NC_008596.1 3817814 3818842 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460; hydrolase complement(3817814..3818842) Mycobacterium smegmatis str. MC2 155 4537112 YP_888051.1 CDS MSMEG_3754 NC_008596.1 3818844 3819833 R hypothetical protein complement(3818844..3819833) Mycobacterium smegmatis str. MC2 155 4532157 YP_888052.1 CDS tyrS NC_008596.1 3825494 3826816 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(3825494..3826816) Mycobacterium smegmatis str. MC2 155 4533374 YP_888053.1 CDS MSMEG_3759 NC_008596.1 3826823 3827446 R responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase complement(3826823..3827446) Mycobacterium smegmatis str. MC2 155 4535552 YP_888054.1 CDS MSMEG_3760 NC_008596.1 3827521 3827730 D hypothetical protein 3827521..3827730 Mycobacterium smegmatis str. MC2 155 4534313 YP_888055.1 CDS MSMEG_3761 NC_008596.1 3827733 3828299 D identified by match to protein family HMM PF02861; Clp protease subunit 3827733..3828299 Mycobacterium smegmatis str. MC2 155 4531926 YP_888056.1 CDS MSMEG_3762 NC_008596.1 3828376 3829140 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3828376..3829140 Mycobacterium smegmatis str. MC2 155 4531590 YP_888057.1 CDS MSMEG_3763 NC_008596.1 3829137 3829907 D identified by match to protein family HMM PF01061; match to protein family HMM TIGR00025; ABC transporter 3829137..3829907 Mycobacterium smegmatis str. MC2 155 4531341 YP_888058.1 CDS MSMEG_3765 NC_008596.1 3829921 3830556 D identified by match to protein family HMM PF00440; transcriptional regulator 3829921..3830556 Mycobacterium smegmatis str. MC2 155 4531395 YP_888059.1 CDS MSMEG_3764 NC_008596.1 3830530 3830739 R identified by match to protein family HMM PF03966; hypothetical protein complement(3830530..3830739) Mycobacterium smegmatis str. MC2 155 4535650 YP_888060.1 CDS MSMEG_3766 NC_008596.1 3830749 3831285 R hypothetical protein complement(3830749..3831285) Mycobacterium smegmatis str. MC2 155 4530973 YP_888061.1 CDS MSMEG_3767 NC_008596.1 3831361 3834354 R activates fatty acids by binding to coenzyme A; acyl-CoA synthetase complement(3831361..3834354) Mycobacterium smegmatis str. MC2 155 4536545 YP_888062.1 CDS MSMEG_3768 NC_008596.1 3834599 3836371 D identified by match to protein family HMM PF00005; macrolide ABC transporter ATP-binding protein 3834599..3836371 Mycobacterium smegmatis str. MC2 155 4531161 YP_888063.1 CDS argH NC_008596.1 3836484 3837893 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(3836484..3837893) Mycobacterium smegmatis str. MC2 155 4533483 YP_888064.1 CDS argG NC_008596.1 3837986 3839185 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(3837986..3839185) Mycobacterium smegmatis str. MC2 155 4534080 YP_888065.1 CDS argR NC_008596.1 3839211 3839687 R regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor complement(3839211..3839687) Mycobacterium smegmatis str. MC2 155 4534046 YP_888066.1 CDS argF NC_008596.1 3839692 3840615 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(3839692..3840615) Mycobacterium smegmatis str. MC2 155 4533190 YP_888067.1 CDS argD NC_008596.1 3840612 3841784 R catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase complement(3840612..3841784) Mycobacterium smegmatis str. MC2 155 4531216 YP_888068.1 CDS argB NC_008596.1 3841781 3842662 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(3841781..3842662) Mycobacterium smegmatis str. MC2 155 4535272 YP_888069.1 CDS argJ NC_008596.1 3842659 3843855 R bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase complement(3842659..3843855) Mycobacterium smegmatis str. MC2 155 4537674 YP_888070.1 CDS argC NC_008596.1 3843864 3844895 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(3843864..3844895) Mycobacterium smegmatis str. MC2 155 4535285 YP_888071.1 CDS pheT NC_008596.1 3845187 3847685 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(3845187..3847685) Mycobacterium smegmatis str. MC2 155 4532880 YP_888072.1 CDS pheS NC_008596.1 3847685 3848755 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(3847685..3848755) Mycobacterium smegmatis str. MC2 155 4532952 YP_888073.1 CDS MSMEG_3780 NC_008596.1 3849549 3850331 R identified by match to protein family HMM PF00211; adenylate and guanylate cyclase catalytic domain-containing protein complement(3849549..3850331) Mycobacterium smegmatis str. MC2 155 4536598 YP_888074.1 CDS MSMEG_3781 NC_008596.1 3850705 3851742 D hypothetical protein 3850705..3851742 Mycobacterium smegmatis str. MC2 155 4531040 YP_888075.1 CDS MSMEG_3783 NC_008596.1 3851791 3853026 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase 3851791..3853026 Mycobacterium smegmatis str. MC2 155 4531102 YP_888076.1 CDS MSMEG_3782 NC_008596.1 3853023 3853430 R identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP complement(3853023..3853430) Mycobacterium smegmatis str. MC2 155 4536820 YP_888077.1 CDS MSMEG_3784 NC_008596.1 3853450 3854205 R identified by match to protein family HMM PF01614; IclR family transcriptional regulator complement(3853450..3854205) Mycobacterium smegmatis str. MC2 155 4534269 YP_888078.1 CDS MSMEG_3785 NC_008596.1 3854210 3855205 R identified by match to protein family HMM PF00294; PfkB-family protein carbohydrate kinase complement(3854210..3855205) Mycobacterium smegmatis str. MC2 155 4533898 YP_888079.1 CDS MSMEG_3786 NC_008596.1 3855341 3856615 D D-amino acid deaminase 3855341..3856615 Mycobacterium smegmatis str. MC2 155 4536739 YP_888080.1 CDS MSMEG_3787 NC_008596.1 3856615 3858216 D identified by match to protein family HMM PF07908; match to protein family HMM PF07969; D-aminoacylase 3856615..3858216 Mycobacterium smegmatis str. MC2 155 4535568 YP_888081.1 CDS eda NC_008596.1 3858213 3858842 D identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182; 2-dehydro-3-deoxyphosphogluconate aldolase 3858213..3858842 Mycobacterium smegmatis str. MC2 155 4532684 YP_888082.1 CDS MSMEG_3789 NC_008596.1 3858872 3860263 D identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791; inner membrane permease YgbN 3858872..3860263 Mycobacterium smegmatis str. MC2 155 4537261 YP_888083.1 CDS MSMEG_3790 NC_008596.1 3860269 3861027 R identified by match to protein family HMM PF00588; match to protein family HMM PF08032; TrmH family RNA methyltransferase complement(3860269..3861027) Mycobacterium smegmatis str. MC2 155 4533542 YP_888084.1 CDS rplT NC_008596.1 3861051 3861440 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(3861051..3861440) Mycobacterium smegmatis str. MC2 155 4536079 YP_888085.1 CDS rpmI NC_008596.1 3861482 3861676 R identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 complement(3861482..3861676) Mycobacterium smegmatis str. MC2 155 4536924 YP_888086.1 CDS infC NC_008596.1 3861730 3862350 R identified by match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168; translation initiation factor IF-3 complement(3861730..3862350) Mycobacterium smegmatis str. MC2 155 4534278 YP_888087.1 CDS MSMEG_3794 NC_008596.1 3862415 3862528 R hypothetical protein complement(3862415..3862528) Mycobacterium smegmatis str. MC2 155 4532192 YP_888088.1 CDS MSMEG_3795 NC_008596.1 3862580 3862939 D hypothetical protein 3862580..3862939 Mycobacterium smegmatis str. MC2 155 4532449 YP_888089.1 CDS lysS NC_008596.1 3863058 3866327 D catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase 3863058..3866327 Mycobacterium smegmatis str. MC2 155 4537473 YP_888090.1 CDS MSMEG_3797 NC_008596.1 3866375 3867739 D identified by match to protein family HMM PF00756; esterase 3866375..3867739 Mycobacterium smegmatis str. MC2 155 4531704 YP_888091.1 CDS MSMEG_3798 NC_008596.1 3867751 3868779 R hypothetical protein complement(3867751..3868779) Mycobacterium smegmatis str. MC2 155 4536869 YP_888092.1 CDS MSMEG_3799 NC_008596.1 3868776 3870062 R hypothetical protein complement(3868776..3870062) Mycobacterium smegmatis str. MC2 155 4534973 YP_888093.1 CDS MSMEG_3800 NC_008596.1 3870193 3870660 D hypothetical protein 3870193..3870660 Mycobacterium smegmatis str. MC2 155 4532469 YP_888094.1 CDS MSMEG_3801 NC_008596.1 3870666 3871853 R hypothetical protein complement(3870666..3871853) Mycobacterium smegmatis str. MC2 155 4536313 YP_888095.1 CDS MSMEG_3802 NC_008596.1 3871850 3873571 R identified by match to protein family HMM PF07721; hypothetical protein complement(3871850..3873571) Mycobacterium smegmatis str. MC2 155 4534122 YP_888096.1 CDS MSMEG_3803 NC_008596.1 3873637 3874113 R lipoprotein LpqH complement(3873637..3874113) Mycobacterium smegmatis str. MC2 155 4531661 YP_888097.1 CDS MSMEG_3804 NC_008596.1 3874246 3874500 D hypothetical protein 3874246..3874500 Mycobacterium smegmatis str. MC2 155 4534604 YP_888098.1 CDS MSMEG_3806 NC_008596.1 3874504 3875688 D hypothetical protein 3874504..3875688 Mycobacterium smegmatis str. MC2 155 4534707 YP_888099.1 CDS MSMEG_3805 NC_008596.1 3875678 3876454 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; oxidoreductase, short chain dehydrogenase/reductase complement(3875678..3876454) Mycobacterium smegmatis str. MC2 155 4531270 YP_888100.1 CDS MSMEG_3807 NC_008596.1 3876491 3877093 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 3876491..3877093 Mycobacterium smegmatis str. MC2 155 4533616 YP_888101.1 CDS MSMEG_3809 NC_008596.1 3877122 3877925 D hypothetical protein 3877122..3877925 Mycobacterium smegmatis str. MC2 155 4534949 YP_888102.1 CDS uvrA NC_008596.1 3877922 3880816 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(3877922..3880816) Mycobacterium smegmatis str. MC2 155 4534415 YP_888103.1 CDS MSMEG_3810 NC_008596.1 3880937 3881641 D identified by match to protein family HMM PF00753; hydrolase 3880937..3881641 Mycobacterium smegmatis str. MC2 155 4531624 YP_888104.1 CDS MSMEG_3811 NC_008596.1 3881645 3882088 R identified by match to protein family HMM PF00582; universal stress protein family protein complement(3881645..3882088) Mycobacterium smegmatis str. MC2 155 4533772 YP_888105.1 CDS MSMEG_3812 NC_008596.1 3882386 3883237 R identified by match to protein family HMM PF02551; acyl-CoA thioesterase complement(3882386..3883237) Mycobacterium smegmatis str. MC2 155 4531359 YP_888106.1 CDS MSMEG_3813 NC_008596.1 3883219 3883497 R NAD-dependent epimerase/dehydratase complement(3883219..3883497) Mycobacterium smegmatis str. MC2 155 4532085 YP_888107.1 CDS MSMEG_3815 NC_008596.1 3883930 3885315 R identified by match to protein family HMM PF07690; drug efflux membrane protein complement(3883930..3885315) Mycobacterium smegmatis str. MC2 155 4534930 YP_888108.1 CDS uvrB NC_008596.1 3885360 3887570 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(3885360..3887570) Mycobacterium smegmatis str. MC2 155 4536872 YP_888109.1 CDS MSMEG_3817 NC_008596.1 3887653 3888093 D identified by match to protein family HMM PF04167; hypothetical protein 3887653..3888093 Mycobacterium smegmatis str. MC2 155 4530987 YP_888110.1 CDS MSMEG_3819 NC_008596.1 3888141 3888686 D hypothetical protein 3888141..3888686 Mycobacterium smegmatis str. MC2 155 4533301 YP_888111.1 CDS MSMEG_3818 NC_008596.1 3888683 3889576 R identified by match to protein family HMM PF04960; thermolabile glutaminase complement(3888683..3889576) Mycobacterium smegmatis str. MC2 155 4532190 YP_888112.1 CDS MSMEG_3820 NC_008596.1 3889571 3889792 D hypothetical protein 3889571..3889792 Mycobacterium smegmatis str. MC2 155 4533319 YP_888113.1 CDS MSMEG_3821 NC_008596.1 3889800 3891341 D identified by match to protein family HMM PF00324; amino acid permease 3889800..3891341 Mycobacterium smegmatis str. MC2 155 4534342 YP_888114.1 CDS MSMEG_3822 NC_008596.1 3891418 3892152 R identified by match to protein family HMM PF00392; match to protein family HMM PF02082; match to protein family HMM PF07729; GntR family transcriptional regulator complement(3891418..3892152) Mycobacterium smegmatis str. MC2 155 4534543 YP_888115.1 CDS MSMEG_3823 NC_008596.1 3892337 3893056 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; 3-oxoacyl-ACP reductase 3892337..3893056 Mycobacterium smegmatis str. MC2 155 4533099 YP_888116.1 CDS MSMEG_3824 NC_008596.1 3893053 3894336 D identified by match to protein family HMM PF06545; hypothetical protein 3893053..3894336 Mycobacterium smegmatis str. MC2 155 4537133 YP_888117.1 CDS MSMEG_3825 NC_008596.1 3894333 3895127 D identified by match to protein family HMM PF00106; 3-oxoacyl-ACP reductase 3894333..3895127 Mycobacterium smegmatis str. MC2 155 4531656 YP_888118.1 CDS MSMEG_3826 NC_008596.1 3895124 3896194 D hypothetical protein 3895124..3896194 Mycobacterium smegmatis str. MC2 155 4537456 YP_888119.1 CDS MSMEG_3827 NC_008596.1 3896187 3897479 D identified by match to protein family HMM PF00120; glutamine synthetase 3896187..3897479 Mycobacterium smegmatis str. MC2 155 4533508 YP_888120.1 CDS MSMEG_3828 NC_008596.1 3897476 3898855 D identified by match to protein family HMM PF00120; glutamine synthetase 3897476..3898855 Mycobacterium smegmatis str. MC2 155 4532690 YP_888121.1 CDS MSMEG_3829 NC_008596.1 3898899 3899843 D identified by match to protein family HMM PF07859; esterase 3898899..3899843 Mycobacterium smegmatis str. MC2 155 4537450 YP_888122.1 CDS MSMEG_3830 NC_008596.1 3899840 3900568 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; 3-oxoacyl-ACP reductase 3899840..3900568 Mycobacterium smegmatis str. MC2 155 4536325 YP_888123.1 CDS MSMEG_3832 NC_008596.1 3900662 3902119 D 4-hydroxyacetophenone monooxygenase 3900662..3902119 Mycobacterium smegmatis str. MC2 155 4535843 YP_888124.1 CDS rpsA NC_008596.1 3903380 3904819 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(3903380..3904819) Mycobacterium smegmatis str. MC2 155 4536667 YP_888125.1 CDS MSMEG_3834 NC_008596.1 3905025 3905606 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(3905025..3905606) Mycobacterium smegmatis str. MC2 155 4536715 YP_888126.1 CDS MSMEG_3835 NC_008596.1 3905603 3905764 R hypothetical protein complement(3905603..3905764) Mycobacterium smegmatis str. MC2 155 4531443 YP_888127.1 CDS MSMEG_3836 NC_008596.1 3905761 3906219 R hypothetical protein complement(3905761..3906219) Mycobacterium smegmatis str. MC2 155 4532113 YP_888128.1 CDS MSMEG_3838 NC_008596.1 3906374 3907534 D integral membrane protein 3906374..3907534 Mycobacterium smegmatis str. MC2 155 4533228 YP_888129.1 CDS MSMEG_3837 NC_008596.1 3907516 3908757 R hypothetical protein complement(3907516..3908757) Mycobacterium smegmatis str. MC2 155 4534210 YP_888130.1 CDS MSMEG_3839 NC_008596.1 3908769 3911495 R has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I complement(3908769..3911495) Mycobacterium smegmatis str. MC2 155 4537115 YP_888131.1 CDS MSMEG_3840 NC_008596.1 3911506 3912411 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(3911506..3912411) Mycobacterium smegmatis str. MC2 155 4532634 YP_888132.1 CDS MSMEG_3841 NC_008596.1 3912482 3913630 D identified by match to protein family HMM PF01266; match to protein family HMM PF01494; hypothetical protein 3912482..3913630 Mycobacterium smegmatis str. MC2 155 4536336 YP_888133.1 CDS MSMEG_3842 NC_008596.1 3913627 3914298 D esterase 3913627..3914298 Mycobacterium smegmatis str. MC2 155 4533411 YP_888134.1 CDS MSMEG_3843 NC_008596.1 3914357 3914806 D identified by match to protein family HMM PF01796; hypothetical protein 3914357..3914806 Mycobacterium smegmatis str. MC2 155 4537568 YP_888135.1 CDS MSMEG_3844 NC_008596.1 3914803 3916005 D lipid-transfer protein 3914803..3916005 Mycobacterium smegmatis str. MC2 155 4535398 YP_888136.1 CDS MSMEG_3845 NC_008596.1 3916139 3916366 D identified by match to protein family HMM PF02594; hypothetical protein 3916139..3916366 Mycobacterium smegmatis str. MC2 155 4532028 YP_888137.1 CDS MSMEG_3846 NC_008596.1 3916414 3918405 R identified by match to protein family HMM PF01636; phosphotransferase enzyme family protein complement(3916414..3918405) Mycobacterium smegmatis str. MC2 155 4532953 YP_888138.1 CDS tynA NC_008596.1 3918460 3920418 R catalyzes the formation of phenylacetaldehyde from 2-phenylethylamine; tyramine oxidase complement(3918460..3920418) Mycobacterium smegmatis str. MC2 155 4537455 YP_888139.1 CDS MSMEG_3848 NC_008596.1 3920451 3921959 R identified by match to protein family HMM PF00135; para-nitrobenzyl esterase complement(3920451..3921959) Mycobacterium smegmatis str. MC2 155 4531190 YP_888140.1 CDS MSMEG_3849 NC_008596.1 3921789 3922064 D hypothetical protein 3921789..3922064 Mycobacterium smegmatis str. MC2 155 4532107 YP_888141.1 CDS MSMEG_3851 NC_008596.1 3922049 3922738 D LppI protein 3922049..3922738 Mycobacterium smegmatis str. MC2 155 4534700 YP_888142.1 CDS MSMEG_3850 NC_008596.1 3922735 3923841 R identified by similarity to GB:AAB82564.1; match to protein family HMM PF00296; alkanesulfonate monooxygenase complement(3922735..3923841) Mycobacterium smegmatis str. MC2 155 4535484 YP_888143.1 CDS MSMEG_3852 NC_008596.1 3923853 3924875 R identified by match to protein family HMM TIGR01728; aliphatic sulfonate binding protein complement(3923853..3924875) Mycobacterium smegmatis str. MC2 155 4535190 YP_888144.1 CDS MSMEG_3853 NC_008596.1 3924920 3925657 R identified by match to protein family HMM PF00005; aliphatic sulfonates transport ATP-binding protein SsuB complement(3924920..3925657) Mycobacterium smegmatis str. MC2 155 4530867 YP_888145.1 CDS MSMEG_3854 NC_008596.1 3925654 3926445 R identified by match to protein family HMM PF00528; aliphatic sulfonates transport permease SsuC complement(3925654..3926445) Mycobacterium smegmatis str. MC2 155 4534320 YP_888146.1 CDS MSMEG_3855 NC_008596.1 3926606 3927340 R hypothetical protein complement(3926606..3927340) Mycobacterium smegmatis str. MC2 155 4531129 YP_888147.1 CDS MSMEG_3856 NC_008596.1 3927427 3928698 R identified by match to protein family HMM PF00486; match to protein family HMM PF00561; CadC family transcriptional regulator complement(3927427..3928698) Mycobacterium smegmatis str. MC2 155 4537119 YP_888148.1 CDS MSMEG_3857 NC_008596.1 3928773 3929126 R hypothetical protein complement(3928773..3929126) Mycobacterium smegmatis str. MC2 155 4535688 YP_888149.1 CDS MSMEG_3858 NC_008596.1 3929241 3929594 D hypothetical protein 3929241..3929594 Mycobacterium smegmatis str. MC2 155 4536213 YP_888150.1 CDS MSMEG_3859 NC_008596.1 3929678 3930475 R identified by match to protein family HMM PF00535; glycosyl transferase family protein complement(3929678..3930475) Mycobacterium smegmatis str. MC2 155 4535206 YP_888151.1 CDS MSMEG_3860 NC_008596.1 3930485 3932332 R identified by match to protein family HMM PF00795; match to protein family HMM TIGR00546; polyprenol-monophosphomannose synthase Ppm1 complement(3930485..3932332) Mycobacterium smegmatis str. MC2 155 4536624 YP_888152.1 CDS MSMEG_3861 NC_008596.1 3932325 3933917 R identified by match to protein family HMM PF07969; amidohydrolase complement(3932325..3933917) Mycobacterium smegmatis str. MC2 155 4537186 YP_888153.1 CDS fxsA NC_008596.1 3933944 3934450 R F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein complement(3933944..3934450) Mycobacterium smegmatis str. MC2 155 4534413 YP_888154.1 CDS MSMEG_3863 NC_008596.1 3934505 3934897 R identified by match to protein family HMM PF01243; pyridoxamine 5'-phosphate oxidase complement(3934505..3934897) Mycobacterium smegmatis str. MC2 155 4532890 YP_888155.1 CDS cobN NC_008596.1 3934939 3938574 R with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; cobaltochelatase subunit CobN complement(3934939..3938574) Mycobacterium smegmatis str. MC2 155 4531705 YP_888156.1 CDS MSMEG_3865 NC_008596.1 3938659 3938871 D hypothetical protein 3938659..3938871 Mycobacterium smegmatis str. MC2 155 4534288 YP_888157.1 CDS MSMEG_3866 NC_008596.1 3938878 3939354 R hypothetical protein complement(3938878..3939354) Mycobacterium smegmatis str. MC2 155 4531581 YP_888158.1 CDS MSMEG_3867 NC_008596.1 3939351 3941570 R identified by match to protein family HMM PF01882; match to protein family HMM PF07726; match to protein family HMM PF07728; ATPase AAA complement(3939351..3941570) Mycobacterium smegmatis str. MC2 155 4534487 YP_888159.1 CDS MSMEG_3868 NC_008596.1 3941567 3942052 R hypothetical protein complement(3941567..3942052) Mycobacterium smegmatis str. MC2 155 4532668 YP_888160.1 CDS MSMEG_3869 NC_008596.1 3942049 3942978 R hypothetical protein complement(3942049..3942978) Mycobacterium smegmatis str. MC2 155 4535605 YP_888161.1 CDS MSMEG_3870 NC_008596.1 3943094 3943993 D identified by match to protein family HMM PF02668; alpha-ketoglutarate-dependent taurine dioxygenase 3943094..3943993 Mycobacterium smegmatis str. MC2 155 4535170 YP_888162.1 CDS cobG NC_008596.1 3944015 3945133 D identified by match to protein family HMM PF03460; match to protein family HMM TIGR02435; precorrin-3B synthase 3944015..3945133 Mycobacterium smegmatis str. MC2 155 4534713 YP_888163.1 CDS cobH NC_008596.1 3945143 3945769 D catalyzes the interconversion of precorrin-8X and hydrogenobyrinate; precorrin-8X methylmutase 3945143..3945769 Mycobacterium smegmatis str. MC2 155 4536906 YP_888164.1 CDS MSMEG_3873 NC_008596.1 3945766 3947277 D identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466; match to protein family HMM TIGR01467; cobalamin biosynthesis protein cobIJ 3945766..3947277 Mycobacterium smegmatis str. MC2 155 4534913 YP_888165.1 CDS MSMEG_3874 NC_008596.1 3947354 3947998 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 3947354..3947998 Mycobacterium smegmatis str. MC2 155 4530853 YP_888166.1 CDS MSMEG_3876 NC_008596.1 3947995 3949062 D identified by match to protein family HMM PF01636; phosphotransferase enzyme family protein 3947995..3949062 Mycobacterium smegmatis str. MC2 155 4531525 YP_888167.1 CDS cobK NC_008596.1 3949043 3949798 R CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase complement(3949043..3949798) Mycobacterium smegmatis str. MC2 155 4536358 YP_888168.1 CDS cobM NC_008596.1 3949795 3950550 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465; precorrin-4 C(11)-methyltransferase complement(3949795..3950550) Mycobacterium smegmatis str. MC2 155 4534578 YP_888169.1 CDS cobL NC_008596.1 3950547 3951731 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469; precorrin-6Y C5,15-methyltransferase complement(3950547..3951731) Mycobacterium smegmatis str. MC2 155 4534668 YP_888170.1 CDS MSMEG_3879 NC_008596.1 3951760 3952518 R identified by match to protein family HMM PF00106; short chain dehydrogenase complement(3951760..3952518) Mycobacterium smegmatis str. MC2 155 4536285 YP_888171.1 CDS MSMEG_3880 NC_008596.1 3952554 3952973 D identified by match to protein family HMM PF01243; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3952554..3952973 Mycobacterium smegmatis str. MC2 155 4535551 YP_888172.1 CDS MSMEG_3881 NC_008596.1 3952974 3954101 R identified by match to protein family HMM PF00557; proline dipeptidase complement(3952974..3954101) Mycobacterium smegmatis str. MC2 155 4531805 YP_888173.1 CDS MSMEG_3882 NC_008596.1 3954112 3954516 R identified by match to protein family HMM PF00903; glyoxalase complement(3954112..3954516) Mycobacterium smegmatis str. MC2 155 4531518 YP_888174.1 CDS MSMEG_3883 NC_008596.1 3954552 3955568 D identified by match to protein family HMM PF01367; match to protein family HMM PF02739; 5'-3' exonuclease 3954552..3955568 Mycobacterium smegmatis str. MC2 155 4532739 YP_888175.1 CDS MSMEG_3884 NC_008596.1 3955575 3956438 R hypothetical protein complement(3955575..3956438) Mycobacterium smegmatis str. MC2 155 4535134 YP_888176.1 CDS MSMEG_3885 NC_008596.1 3956438 3959176 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM PF08148; DEAD/DEAH box helicase complement(3956438..3959176) Mycobacterium smegmatis str. MC2 155 4533687 YP_888177.1 CDS tatC NC_008596.1 3959166 3960119 R identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945; twin arginine-targeting protein translocase TatC complement(3959166..3960119) Mycobacterium smegmatis str. MC2 155 4534970 YP_888178.1 CDS tatA NC_008596.1 3960196 3960441 R TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase A complement(3960196..3960441) Mycobacterium smegmatis str. MC2 155 4532480 YP_888179.1 CDS MSMEG_3888 NC_008596.1 3960513 3961469 R hypothetical protein complement(3960513..3961469) Mycobacterium smegmatis str. MC2 155 4532914 YP_888180.1 CDS MSMEG_3890 NC_008596.1 3962479 3963837 R identified by match to protein family HMM PF03136; match to protein family HMM PF03316; proteasome component complement(3962479..3963837) Mycobacterium smegmatis str. MC2 155 4534506 YP_888181.1 CDS MSMEG_3891 NC_008596.1 3963990 3964871 D identified by match to protein family HMM PF00561; hydrolase 3963990..3964871 Mycobacterium smegmatis str. MC2 155 4535088 YP_888182.1 CDS MSMEG_3892 NC_008596.1 3964940 3965479 D hypothetical protein 3964940..3965479 Mycobacterium smegmatis str. MC2 155 4533657 YP_888183.1 CDS MSMEG_3893 NC_008596.1 3965476 3966558 D hypothetical protein 3965476..3966558 Mycobacterium smegmatis str. MC2 155 4533732 YP_888184.1 CDS MSMEG_3894 NC_008596.1 3966564 3967304 R identified by match to protein family HMM PF00227; proteasome subunit alpha complement(3966564..3967304) Mycobacterium smegmatis str. MC2 155 4535010 YP_888185.1 CDS MSMEG_3895 NC_008596.1 3967301 3968143 R identified by match to protein family HMM PF00227; proteasome subunit beta complement(3967301..3968143) Mycobacterium smegmatis str. MC2 155 4534165 YP_888186.1 CDS MSMEG_3896 NC_008596.1 3968209 3968403 R identified by match to protein family HMM PF05639; hypothetical protein complement(3968209..3968403) Mycobacterium smegmatis str. MC2 155 4532937 YP_888187.1 CDS MSMEG_3897 NC_008596.1 3968511 3970007 R identified by match to protein family HMM PF03136; match to protein family HMM PF03316; proteasome component complement(3968511..3970007) Mycobacterium smegmatis str. MC2 155 4535367 YP_888188.1 CDS thpD NC_008596.1 3970017 3970934 R identified by match to protein family HMM PF05721; match to protein family HMM TIGR02408; ectoine hydroxylase complement(3970017..3970934) Mycobacterium smegmatis str. MC2 155 4530887 YP_888189.1 CDS ectC NC_008596.1 3970964 3971356 R N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid; L-ectoine synthase complement(3970964..3971356) Mycobacterium smegmatis str. MC2 155 4531992 YP_888190.1 CDS ectB NC_008596.1 3971368 3972654 R catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase complement(3971368..3972654) Mycobacterium smegmatis str. MC2 155 4534577 YP_888191.1 CDS ectA NC_008596.1 3972734 3973267 R identified by match to protein family HMM PF00583; match to protein family HMM TIGR02406; L-2,4-diaminobutyric acid acetyltransferase complement(3972734..3973267) Mycobacterium smegmatis str. MC2 155 4535072 YP_888192.1 CDS MSMEG_3902 NC_008596.1 3974235 3976076 R identified by match to protein family HMM PF00004; ATPase AAA complement(3974235..3976076) Mycobacterium smegmatis str. MC2 155 4536085 YP_888193.1 CDS MSMEG_3903 NC_008596.1 3976222 3976725 D low molecular weight antigen MTB12 3976222..3976725 Mycobacterium smegmatis str. MC2 155 4537534 YP_888194.1 CDS MSMEG_3904 NC_008596.1 3976734 3977297 D LppK protein 3976734..3977297 Mycobacterium smegmatis str. MC2 155 4532035 YP_888195.1 CDS MSMEG_3905 NC_008596.1 3977303 3977596 D identified by match to protein family HMM PF04456; hypothetical protein 3977303..3977596 Mycobacterium smegmatis str. MC2 155 4536224 YP_888196.1 CDS MSMEG_3906 NC_008596.1 3977602 3978450 R tRNA (adenine-N(1)-)-methyltransferase complement(3977602..3978450) Mycobacterium smegmatis str. MC2 155 4531994 YP_888197.1 CDS MSMEG_3907 NC_008596.1 3978534 3979409 D recombinase B 3978534..3979409 Mycobacterium smegmatis str. MC2 155 4530883 YP_888198.1 CDS MSMEG_3908 NC_008596.1 3979406 3980203 D hypothetical protein 3979406..3980203 Mycobacterium smegmatis str. MC2 155 4532864 YP_888199.1 CDS MSMEG_3910 NC_008596.1 3980200 3980706 D hypothetical protein 3980200..3980706 Mycobacterium smegmatis str. MC2 155 4537257 YP_888200.1 CDS MSMEG_3909 NC_008596.1 3980700 3981236 R identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026; hypothetical protein complement(3980700..3981236) Mycobacterium smegmatis str. MC2 155 4534764 YP_888201.1 CDS MSMEG_3911 NC_008596.1 3981247 3981558 R oxidoreductase complement(3981247..3981558) Mycobacterium smegmatis str. MC2 155 4533844 YP_888202.1 CDS MSMEG_3912 NC_008596.1 3981603 3982166 R acetoacetyl-CoA reductase complement(3981603..3982166) Mycobacterium smegmatis str. MC2 155 4532790 YP_888203.1 CDS MSMEG_3914 NC_008596.1 3982213 3983361 D identified by match to protein family HMM PF00144; beta-lactamase 3982213..3983361 Mycobacterium smegmatis str. MC2 155 4536162 YP_888204.1 CDS MSMEG_3915 NC_008596.1 3983780 3984850 R identified by match to protein family HMM PF00107; NAD-dependent alcohol dehydrogenase complement(3983780..3984850) Mycobacterium smegmatis str. MC2 155 4536602 YP_888205.1 CDS MSMEG_3916 NC_008596.1 3984847 3985164 R hypothetical protein complement(3984847..3985164) Mycobacterium smegmatis str. MC2 155 4532492 YP_888206.1 CDS MSMEG_3917 NC_008596.1 3985843 3986388 R hypothetical protein complement(3985843..3986388) Mycobacterium smegmatis str. MC2 155 4532033 YP_888207.1 CDS MSMEG_3918 NC_008596.1 3986453 3986902 R hypothetical protein complement(3986453..3986902) Mycobacterium smegmatis str. MC2 155 4532975 YP_888208.1 CDS MSMEG_3919 NC_008596.1 3987401 3988021 D hypothetical protein 3987401..3988021 Mycobacterium smegmatis str. MC2 155 4536802 YP_888209.1 CDS MSMEG_3920 NC_008596.1 3988011 3988562 D hypothetical protein 3988011..3988562 Mycobacterium smegmatis str. MC2 155 4534812 YP_888210.1 CDS MSMEG_3922 NC_008596.1 3988559 3989284 D hypothetical protein 3988559..3989284 Mycobacterium smegmatis str. MC2 155 4535074 YP_888211.1 CDS MSMEG_3921 NC_008596.1 3989281 3990024 R hypothetical protein complement(3989281..3990024) Mycobacterium smegmatis str. MC2 155 4531004 YP_888212.1 CDS MSMEG_3923 NC_008596.1 3990221 3990724 D identified by match to protein family HMM PF04978; hypothetical protein 3990221..3990724 Mycobacterium smegmatis str. MC2 155 4535705 YP_888213.1 CDS MSMEG_3924 NC_008596.1 3990727 3991974 R identified by match to protein family HMM PF00668; peptide synthetase ScpsB complement(3990727..3991974) Mycobacterium smegmatis str. MC2 155 4532757 YP_888214.1 CDS MSMEG_3925 NC_008596.1 3992167 3993123 D identified by match to protein family HMM PF00753; AttM/AiiB family protein 3992167..3993123 Mycobacterium smegmatis str. MC2 155 4532809 YP_888215.1 CDS MSMEG_3926 NC_008596.1 3993256 3996024 R identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation-transporting ATPase Pma1 complement(3993256..3996024) Mycobacterium smegmatis str. MC2 155 4536139 YP_888216.1 CDS MSMEG_3927 NC_008596.1 3996059 3996526 R identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; peptidase M52, hydrogen uptake protein complement(3996059..3996526) Mycobacterium smegmatis str. MC2 155 4532123 YP_888217.1 CDS MSMEG_3928 NC_008596.1 3996523 3997815 R identified by match to protein family HMM PF00374; [NiFe] hydrogenase subunit alpha complement(3996523..3997815) Mycobacterium smegmatis str. MC2 155 4533553 YP_888218.1 CDS MSMEG_3929 NC_008596.1 3997812 3998570 R identified by match to protein family HMM PF01058; [NiFe] hydrogenase subunit delta complement(3997812..3998570) Mycobacterium smegmatis str. MC2 155 4534013 YP_888219.1 CDS MSMEG_3930 NC_008596.1 3998571 3999386 R identified by match to protein family HMM PF00175; [NiFe] hydrogenase subunit gamma complement(3998571..3999386) Mycobacterium smegmatis str. MC2 155 4537592 YP_888220.1 CDS MSMEG_3931 NC_008596.1 3999400 4000485 R identified by match to protein family HMM PF00037; [NiFe] hydrogenase subunit beta complement(3999400..4000485) Mycobacterium smegmatis str. MC2 155 4532525 YP_888221.1 CDS MSMEG_3932 NC_008596.1 4000508 4000945 R identified by match to protein family HMM PF00011; hypothetical protein complement(4000508..4000945) Mycobacterium smegmatis str. MC2 155 4531936 YP_888222.1 CDS MSMEG_3934 NC_008596.1 4001317 4003635 D identified by match to protein family HMM PF00391; match to protein family HMM PF01326; match to protein family HMM PF02896; phosphoenolpyruvate synthase 4001317..4003635 Mycobacterium smegmatis str. MC2 155 4532802 YP_888223.1 CDS MSMEG_3933 NC_008596.1 4003514 4004869 R identified by match to protein family HMM PF03007; hypothetical protein complement(4003514..4004869) Mycobacterium smegmatis str. MC2 155 4531542 YP_888224.1 CDS MSMEG_3935 NC_008596.1 4004936 4005712 R hypothetical protein complement(4004936..4005712) Mycobacterium smegmatis str. MC2 155 4535767 YP_888225.1 CDS MSMEG_3936 NC_008596.1 4005847 4006746 R identified by match to protein family HMM PF00582; universal stress protein family protein complement(4005847..4006746) Mycobacterium smegmatis str. MC2 155 4535860 YP_888226.1 CDS MSMEG_3937 NC_008596.1 4006743 4007213 R hypothetical protein complement(4006743..4007213) Mycobacterium smegmatis str. MC2 155 4534789 YP_888227.1 CDS MSMEG_3938 NC_008596.1 4006998 4007264 D hypothetical protein 4006998..4007264 Mycobacterium smegmatis str. MC2 155 4534006 YP_888228.1 CDS MSMEG_3939 NC_008596.1 4007445 4008236 D identified by match to protein family HMM PF00582; universal stress protein family protein 4007445..4008236 Mycobacterium smegmatis str. MC2 155 4535567 YP_888229.1 CDS MSMEG_3940 NC_008596.1 4008412 4009293 D identified by match to protein family HMM PF00582; universal stress protein family protein 4008412..4009293 Mycobacterium smegmatis str. MC2 155 4535796 YP_888230.1 CDS MSMEG_3941 NC_008596.1 4009310 4010953 R identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730; GAF family protein complement(4009310..4010953) Mycobacterium smegmatis str. MC2 155 4536388 YP_888231.1 CDS MSMEG_3942 NC_008596.1 4011176 4012672 R hypothetical protein complement(4011176..4012672) Mycobacterium smegmatis str. MC2 155 4531062 YP_888232.1 CDS MSMEG_3943 NC_008596.1 4012832 4013794 D hypothetical protein 4012832..4013794 Mycobacterium smegmatis str. MC2 155 4536089 YP_888233.1 CDS MSMEG_3944 NC_008596.1 4013788 4014441 D identified by match to protein family HMM PF00072; match to protein family HMM PF00196; two component transcriptional regulatory protein devr 4013788..4014441 Mycobacterium smegmatis str. MC2 155 4535487 YP_888234.1 CDS MSMEG_3945 NC_008596.1 4014443 4015264 R identified by match to protein family HMM PF00582; universal stress protein family protein complement(4014443..4015264) Mycobacterium smegmatis str. MC2 155 4537708 YP_888235.1 CDS MSMEG_3946 NC_008596.1 4015330 4015905 R transmembrane protein complement(4015330..4015905) Mycobacterium smegmatis str. MC2 155 4537415 YP_888236.1 CDS MSMEG_3948 NC_008596.1 4016065 4017468 D identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946; acyltransferase 4016065..4017468 Mycobacterium smegmatis str. MC2 155 4534107 YP_888237.1 CDS MSMEG_3947 NC_008596.1 4017452 4018450 R identified by match to protein family HMM PF00294; 6-phosphofructokinase complement(4017452..4018450) Mycobacterium smegmatis str. MC2 155 4534449 YP_888238.1 CDS MSMEG_3949 NC_008596.1 4018666 4018917 D hypothetical protein 4018666..4018917 Mycobacterium smegmatis str. MC2 155 4532536 YP_888239.1 CDS MSMEG_3950 NC_008596.1 4019051 4019935 D identified by match to protein family HMM PF00582; universal stress protein family protein 4019051..4019935 Mycobacterium smegmatis str. MC2 155 4536392 YP_888240.1 CDS MSMEG_3952 NC_008596.1 4020005 4020961 D hypothetical protein 4020005..4020961 Mycobacterium smegmatis str. MC2 155 4534315 YP_888241.1 CDS MSMEG_3951 NC_008596.1 4020929 4021870 R hypothetical protein complement(4020929..4021870) Mycobacterium smegmatis str. MC2 155 4535995 YP_888242.1 CDS MSMEG_3953 NC_008596.1 4021891 4022955 R hypothetical protein complement(4021891..4022955) Mycobacterium smegmatis str. MC2 155 4531966 YP_888243.1 CDS MSMEG_3954 NC_008596.1 4023070 4025790 D identified by match to protein family HMM PF03632; match to protein family HMM PF03633; match to protein family HMM PF03636; trehalose 6-phosphate phosphorylase 4023070..4025790 Mycobacterium smegmatis str. MC2 155 4530913 YP_888244.1 CDS MSMEG_3955 NC_008596.1 4025793 4026797 R hypothetical protein complement(4025793..4026797) Mycobacterium smegmatis str. MC2 155 4534969 YP_888245.1 CDS MSMEG_3956 NC_008596.1 4026826 4027116 R alkylhydroperoxidase complement(4026826..4027116) Mycobacterium smegmatis str. MC2 155 4535394 YP_888246.1 CDS MSMEG_3957 NC_008596.1 4027120 4028703 R identified by match to protein family HMM PF01844; match to protein family HMM PF02720; hypothetical protein complement(4027120..4028703) Mycobacterium smegmatis str. MC2 155 4532591 YP_888247.1 CDS MSMEG_3958 NC_008596.1 4028808 4029335 R glyoxalase/bleomycin resistance protein/dioxygenase complement(4028808..4029335) Mycobacterium smegmatis str. MC2 155 4532921 YP_888248.1 CDS MSMEG_3959 NC_008596.1 4029539 4030411 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; transcriptional regulator 4029539..4030411 Mycobacterium smegmatis str. MC2 155 4532350 YP_888249.1 CDS MSMEG_3960 NC_008596.1 4030440 4030958 D identified by match to protein family HMM PF00440; transcriptional regulator 4030440..4030958 Mycobacterium smegmatis str. MC2 155 4537040 YP_888250.1 CDS MSMEG_3961 NC_008596.1 4030991 4031584 D identified by match to protein family HMM PF00440; transcriptional regulator 4030991..4031584 Mycobacterium smegmatis str. MC2 155 4531965 YP_888251.1 CDS MSMEG_3962 NC_008596.1 4031670 4032854 R identified by match to protein family HMM PF01070; lactate 2-monooxygenase complement(4031670..4032854) Mycobacterium smegmatis str. MC2 155 4534117 YP_888252.1 CDS MSMEG_3963 NC_008596.1 4033091 4033297 R hypothetical protein complement(4033091..4033297) Mycobacterium smegmatis str. MC2 155 4535660 YP_888253.1 CDS MSMEG_3964 NC_008596.1 4033163 4034893 D catalyzes the formation of acetate from pyruvate; pyruvate dehydrogenase 4033163..4034893 Mycobacterium smegmatis str. MC2 155 4533318 YP_888254.1 CDS MSMEG_3965 NC_008596.1 4034909 4035196 D hypothetical protein 4034909..4035196 Mycobacterium smegmatis str. MC2 155 4532120 YP_888255.1 CDS MSMEG_3966 NC_008596.1 4035225 4035536 D hypothetical protein 4035225..4035536 Mycobacterium smegmatis str. MC2 155 4532119 YP_888256.1 CDS MSMEG_3967 NC_008596.1 4035550 4036224 R identified by match to protein family HMM PF02082; match to protein family HMM PF08220; TonB-dependent receptor complement(4035550..4036224) Mycobacterium smegmatis str. MC2 155 4531195 YP_888257.1 CDS MSMEG_3971 NC_008596.1 4035904 4036752 D hypothetical protein 4035904..4036752 Mycobacterium smegmatis str. MC2 155 4535819 YP_888258.1 CDS MSMEG_3968 NC_008596.1 4036208 4036456 R hypothetical protein complement(4036208..4036456) Mycobacterium smegmatis str. MC2 155 4533518 YP_888259.1 CDS MSMEG_3969 NC_008596.1 4036264 4036668 R hypothetical protein complement(4036264..4036668) Mycobacterium smegmatis str. MC2 155 4534725 YP_888260.1 CDS MSMEG_3970 NC_008596.1 4036718 4038121 R identified by match to protein family HMM PF01425; glutamyl-tRNA(Gln) amidotransferase subunit A complement(4036718..4038121) Mycobacterium smegmatis str. MC2 155 4536560 YP_888261.1 CDS MSMEG_3972 NC_008596.1 4038226 4039044 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 4038226..4039044 Mycobacterium smegmatis str. MC2 155 4531147 YP_888262.1 CDS MSMEG_3973 NC_008596.1 4039051 4041021 R identified by match to protein family HMM PF02538; N-methylhydantoinase complement(4039051..4041021) Mycobacterium smegmatis str. MC2 155 4532138 YP_888263.1 CDS MSMEG_3975 NC_008596.1 4043213 4044805 D identified by match to protein family HMM PF07905; regulatory protein 4043213..4044805 Mycobacterium smegmatis str. MC2 155 4533582 YP_888264.1 CDS MSMEG_3976 NC_008596.1 4045146 4045796 R identified by match to protein family HMM PF00440; DNA-binding protein complement(4045146..4045796) Mycobacterium smegmatis str. MC2 155 4532748 YP_888265.1 CDS MSMEG_3977 NC_008596.1 4045998 4046852 D identified by match to protein family HMM PF00296; hypothetical protein 4045998..4046852 Mycobacterium smegmatis str. MC2 155 4532555 YP_888266.1 CDS ampC NC_008596.1 4046936 4048078 D identified by match to protein family HMM PF00144; beta-lactamase 4046936..4048078 Mycobacterium smegmatis str. MC2 155 4533555 YP_888267.1 CDS MSMEG_3980 NC_008596.1 4049025 4049669 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator complement(4049025..4049669) Mycobacterium smegmatis str. MC2 155 4537302 YP_888268.1 CDS MSMEG_3981 NC_008596.1 4049735 4050916 R identified by match to protein family HMM PF02515; L-carnitine dehydratase/bile acid-inducible protein F complement(4049735..4050916) Mycobacterium smegmatis str. MC2 155 4533541 YP_888269.1 CDS MSMEG_3982 NC_008596.1 4050913 4052046 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(4050913..4052046) Mycobacterium smegmatis str. MC2 155 4531318 YP_888270.1 CDS MSMEG_3984 NC_008596.1 4053599 4054810 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase IS116/IS110/IS902 4053599..4054810 Mycobacterium smegmatis str. MC2 155 4533981 YP_888271.1 CDS MSMEG_3985 NC_008596.1 4055023 4056354 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; integral membrane transporter 4055023..4056354 Mycobacterium smegmatis str. MC2 155 4536431 YP_888272.1 CDS MSMEG_3986 NC_008596.1 4056401 4058032 D identified by match to protein family HMM PF00501; acetyl-coenzyme A synthetase 4056401..4058032 Mycobacterium smegmatis str. MC2 155 4534299 YP_888273.1 CDS MSMEG_3987 NC_008596.1 4058087 4059460 D identified by match to protein family HMM PF00890; match to protein family HMM PF01266; FAD dependent oxidoreductase 4058087..4059460 Mycobacterium smegmatis str. MC2 155 4537414 YP_888274.1 CDS MSMEG_3988 NC_008596.1 4059480 4060481 R identified by match to protein family HMM PF01037; AsnC family transcriptional regulator complement(4059480..4060481) Mycobacterium smegmatis str. MC2 155 4532234 YP_888275.1 CDS MSMEG_3989 NC_008596.1 4060590 4061819 D identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; peptidase M20D, amidohydrolase 4060590..4061819 Mycobacterium smegmatis str. MC2 155 4537121 YP_888276.1 CDS MSMEG_3990 NC_008596.1 4061819 4063096 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; transporter 4061819..4063096 Mycobacterium smegmatis str. MC2 155 4536216 YP_888277.1 CDS MSMEG_3991 NC_008596.1 4063093 4063911 D identified by match to protein family HMM PF04199; cyclase 4063093..4063911 Mycobacterium smegmatis str. MC2 155 4535667 YP_888278.1 CDS MSMEG_3992 NC_008596.1 4063918 4065294 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; integral membrane transporter complement(4063918..4065294) Mycobacterium smegmatis str. MC2 155 4537658 YP_888279.1 CDS MSMEG_3993 NC_008596.1 4065447 4066229 R identified by match to protein family HMM PF01177; Asp/Glu racemase complement(4065447..4066229) Mycobacterium smegmatis str. MC2 155 4537069 YP_888280.1 CDS MSMEG_3994 NC_008596.1 4066219 4067007 R identified by match to protein family HMM PF00106; short chain dehydrogenase complement(4066219..4067007) Mycobacterium smegmatis str. MC2 155 4534145 YP_888281.1 CDS MSMEG_3995 NC_008596.1 4067064 4068380 R identified by match to protein family HMM PF01546; match to protein family HMM TIGR01879; N-carbamoyl-L-amino acid amidohydrolase complement(4067064..4068380) Mycobacterium smegmatis str. MC2 155 4535556 YP_888282.1 CDS hydA NC_008596.1 4068425 4069888 R catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase complement(4068425..4069888) Mycobacterium smegmatis str. MC2 155 4537141 YP_888283.1 CDS MSMEG_3997 NC_008596.1 4070103 4071197 D regulatory protein 4070103..4071197 Mycobacterium smegmatis str. MC2 155 4531527 YP_888284.1 CDS MSMEG_3998 NC_008596.1 4071433 4072320 R identified by match to protein family HMM PF00165; match to protein family HMM PF02311; MmsAB operon regulatory protein complement(4071433..4072320) Mycobacterium smegmatis str. MC2 155 4532160 YP_888285.1 CDS MSMEG_3999 NC_008596.1 4072558 4073547 D identified by match to protein family HMM PF00532; ABC transporter periplasmic protein 4072558..4073547 Mycobacterium smegmatis str. MC2 155 4537594 YP_888286.1 CDS MSMEG_4000 NC_008596.1 4073608 4075119 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 4073608..4075119 Mycobacterium smegmatis str. MC2 155 4535645 YP_888287.1 CDS MSMEG_4001 NC_008596.1 4075142 4076146 D identified by match to protein family HMM PF02653; ribose transporter permease RbsC 4075142..4076146 Mycobacterium smegmatis str. MC2 155 4536817 YP_888288.1 CDS MSMEG_4002 NC_008596.1 4076191 4077273 D identified by match to protein family HMM PF00107; oxidoreductase, zinc-binding dehydrogenase 4076191..4077273 Mycobacterium smegmatis str. MC2 155 4531796 YP_888289.1 CDS MSMEG_4003 NC_008596.1 4077270 4078223 D hypothetical protein 4077270..4078223 Mycobacterium smegmatis str. MC2 155 4536619 YP_888290.1 CDS MSMEG_4004 NC_008596.1 4078220 4078969 D identified by match to protein family HMM PF00106; 3-oxoacyl-ACP reductase 4078220..4078969 Mycobacterium smegmatis str. MC2 155 4536756 YP_888291.1 CDS MSMEG_4005 NC_008596.1 4078966 4079841 D calcium-binding protein 4078966..4079841 Mycobacterium smegmatis str. MC2 155 4532180 YP_888292.1 CDS MSMEG_4006 NC_008596.1 4079904 4081382 R identified by match to protein family HMM PF02954; CdaR family transcriptional regulator complement(4079904..4081382) Mycobacterium smegmatis str. MC2 155 4532934 YP_888293.1 CDS MSMEG_4007 NC_008596.1 4081401 4082390 D identified by match to protein family HMM PF03171; oxidoreductase, 2OG-Fe(II) oxygenase 4081401..4082390 Mycobacterium smegmatis str. MC2 155 4531016 YP_888294.1 CDS MSMEG_4008 NC_008596.1 4082574 4083587 D identified by match to protein family HMM PF03171; oxidoreductase, 2OG-Fe(II) oxygenase 4082574..4083587 Mycobacterium smegmatis str. MC2 155 4535444 YP_888295.1 CDS MSMEG_4009 NC_008596.1 4083529 4083852 D identified by match to protein family HMM PF00111; vanillate O-demethylase 4083529..4083852 Mycobacterium smegmatis str. MC2 155 4531127 YP_888296.1 CDS MSMEG_4010 NC_008596.1 4083868 4084278 D identified by match to protein family HMM PF00903; glyoxalase 4083868..4084278 Mycobacterium smegmatis str. MC2 155 4535616 YP_888297.1 CDS MSMEG_4011 NC_008596.1 4084288 4085598 D identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; pyrimidine permease RutG 4084288..4085598 Mycobacterium smegmatis str. MC2 155 4535305 YP_888298.1 CDS hydA NC_008596.1 4085598 4087019 D catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase 4085598..4087019 Mycobacterium smegmatis str. MC2 155 4534534 YP_888299.1 CDS MSMEG_4013 NC_008596.1 4087035 4088054 D identified by match to protein family HMM PF00296; oxidoreductase 4087035..4088054 Mycobacterium smegmatis str. MC2 155 4536352 YP_888300.1 CDS MSMEG_4014 NC_008596.1 4088051 4089346 D identified by match to protein family HMM PF01546; match to protein family HMM TIGR01879; N-carbamoyl-L-amino acid amidohydrolase 4088051..4089346 Mycobacterium smegmatis str. MC2 155 4536734 YP_888301.1 CDS MSMEG_4016 NC_008596.1 4089336 4089491 D hypothetical protein 4089336..4089491 Mycobacterium smegmatis str. MC2 155 4537340 YP_888302.1 CDS MSMEG_4015 NC_008596.1 4089371 4089532 R hypothetical protein complement(4089371..4089532) Mycobacterium smegmatis str. MC2 155 4533199 YP_888303.1 CDS MSMEG_4017 NC_008596.1 4089488 4089820 D BmyD protein 4089488..4089820 Mycobacterium smegmatis str. MC2 155 4537105 YP_888304.1 CDS MSMEG_4018 NC_008596.1 4089826 4090581 R identified by match to protein family HMM PF01909; nucleotidyltransferase domain-containing protein complement(4089826..4090581) Mycobacterium smegmatis str. MC2 155 4536789 YP_888305.1 CDS MSMEG_4019 NC_008596.1 4090775 4092508 R identified by match to protein family HMM PF00501; AMP-dependent synthetase/ligase complement(4090775..4092508) Mycobacterium smegmatis str. MC2 155 4536787 YP_888306.1 CDS MSMEG_4020 NC_008596.1 4092516 4093307 R identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase complement(4092516..4093307) Mycobacterium smegmatis str. MC2 155 4534569 YP_888307.1 CDS MSMEG_4021 NC_008596.1 4093304 4093456 R hypothetical protein complement(4093304..4093456) Mycobacterium smegmatis str. MC2 155 4535259 YP_888308.1 CDS MSMEG_4022 NC_008596.1 4093747 4094346 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 4093747..4094346 Mycobacterium smegmatis str. MC2 155 4534258 YP_888309.1 CDS MSMEG_4023 NC_008596.1 4094612 4096099 R identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; oxidoreductase complement(4094612..4096099) Mycobacterium smegmatis str. MC2 155 4532023 YP_888310.1 CDS MSMEG_4024 NC_008596.1 4096520 4097857 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(4096520..4097857) Mycobacterium smegmatis str. MC2 155 4534019 YP_888311.1 CDS MSMEG_4025 NC_008596.1 4097995 4098918 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(4097995..4098918) Mycobacterium smegmatis str. MC2 155 4531653 YP_888312.1 CDS MSMEG_4026 NC_008596.1 4099556 4099693 D hypothetical protein 4099556..4099693 Mycobacterium smegmatis str. MC2 155 4536423 YP_888313.1 CDS MSMEG_4027 NC_008596.1 4099750 4100754 D identified by match to protein family HMM PF00107; zinc-containing alcohol dehydrogenase superfamily protein 4099750..4100754 Mycobacterium smegmatis str. MC2 155 4536297 YP_888314.1 CDS MSMEG_4028 NC_008596.1 4100797 4101018 R hypothetical protein complement(4100797..4101018) Mycobacterium smegmatis str. MC2 155 4536580 YP_888315.1 CDS MSMEG_4029 NC_008596.1 4101244 4101849 R identified by match to protein family HMM PF07336; hypothetical protein complement(4101244..4101849) Mycobacterium smegmatis str. MC2 155 4532355 YP_888316.1 CDS MSMEG_4030 NC_008596.1 4102269 4102760 D identified by match to protein family HMM PF04224; hypothetical protein 4102269..4102760 Mycobacterium smegmatis str. MC2 155 4535139 YP_888317.1 CDS MSMEG_4031 NC_008596.1 4102959 4103162 D hypothetical protein 4102959..4103162 Mycobacterium smegmatis str. MC2 155 4535932 YP_888318.1 CDS MSMEG_4032 NC_008596.1 4103378 4104352 R identified by match to protein family HMM PF00107; zinc-binding alcohol dehydrogenase complement(4103378..4104352) Mycobacterium smegmatis str. MC2 155 4531296 YP_888319.1 CDS MSMEG_4033 NC_008596.1 4104476 4105129 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 4104476..4105129 Mycobacterium smegmatis str. MC2 155 4533571 YP_888320.1 CDS MSMEG_4034 NC_008596.1 4105207 4106040 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368; match to protein family HMM PF07993; NAD dependent epimerase/dehydratase 4105207..4106040 Mycobacterium smegmatis str. MC2 155 4537237 YP_888321.1 CDS MSMEG_4035 NC_008596.1 4106113 4106928 R citrate synthase complement(4106113..4106928) Mycobacterium smegmatis str. MC2 155 4531824 YP_888322.1 CDS MSMEG_4036 NC_008596.1 4106918 4108465 R identified by match to protein family HMM PF00501; crotonobetaine/carnitine-CoA ligase complement(4106918..4108465) Mycobacterium smegmatis str. MC2 155 4534341 YP_888323.1 CDS MSMEG_4037 NC_008596.1 4108522 4108932 R hypothetical protein complement(4108522..4108932) Mycobacterium smegmatis str. MC2 155 4532251 YP_888324.1 CDS MSMEG_4038 NC_008596.1 4109489 4110982 D identified by match to protein family HMM PF00171; vanillin dehydrogenase 4109489..4110982 Mycobacterium smegmatis str. MC2 155 4533691 YP_888325.1 CDS MSMEG_4039 NC_008596.1 4110996 4112135 D identified by match to protein family HMM PF00107; aryl-alcohol dehydrogenase 4110996..4112135 Mycobacterium smegmatis str. MC2 155 4535531 YP_888326.1 CDS MSMEG_4040 NC_008596.1 4112188 4112853 D identified by match to protein family HMM PF00881; hypothetical protein 4112188..4112853 Mycobacterium smegmatis str. MC2 155 4531700 YP_888327.1 CDS MSMEG_4041 NC_008596.1 4113063 4113947 D identified by match to protein family HMM PF00775; match to protein family HMM PF04444; hydroxyquinol 1,2-dioxygenase 4113063..4113947 Mycobacterium smegmatis str. MC2 155 4533832 YP_888328.1 CDS MSMEG_4042 NC_008596.1 4114106 4114864 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 4114106..4114864 Mycobacterium smegmatis str. MC2 155 4536261 YP_888329.1 CDS MSMEG_4043 NC_008596.1 4114887 4115840 D identified by match to protein family HMM PF04909; amidohydrolase 4114887..4115840 Mycobacterium smegmatis str. MC2 155 4533685 YP_888330.1 CDS MSMEG_4044 NC_008596.1 4115906 4117693 R identified by match to protein family HMM PF01590; GAF domain-containing protein complement(4115906..4117693) Mycobacterium smegmatis str. MC2 155 4532903 YP_888331.1 CDS MSMEG_4045 NC_008596.1 4117738 4118019 R identified by match to protein family HMM PF02426; muconolactone delta-isomerase complement(4117738..4118019) Mycobacterium smegmatis str. MC2 155 4531406 YP_888332.1 CDS MSMEG_4046 NC_008596.1 4118016 4119176 R identified by match to protein family HMM PF02515; L-carnitine dehydratase/bile acid-inducible protein F complement(4118016..4119176) Mycobacterium smegmatis str. MC2 155 4531001 YP_888333.1 CDS MSMEG_4047 NC_008596.1 4119176 4120141 R identified by match to protein family HMM PF00753; dihydropteroate synthase complement(4119176..4120141) Mycobacterium smegmatis str. MC2 155 4535984 YP_888334.1 CDS MSMEG_4048 NC_008596.1 4120239 4121222 R cyclase complement(4120239..4121222) Mycobacterium smegmatis str. MC2 155 4535786 YP_888335.1 CDS MSMEG_4049 NC_008596.1 4121265 4122713 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; sugar transporter permease complement(4121265..4122713) Mycobacterium smegmatis str. MC2 155 4537031 YP_888336.1 CDS MSMEG_4050 NC_008596.1 4122773 4123459 R hypothetical protein complement(4122773..4123459) Mycobacterium smegmatis str. MC2 155 4537518 YP_888337.1 CDS MSMEG_4051 NC_008596.1 4123604 4123735 R hypothetical protein complement(4123604..4123735) Mycobacterium smegmatis str. MC2 155 4537747 YP_888338.1 CDS MSMEG_4052 NC_008596.1 4123732 4123893 R hypothetical protein complement(4123732..4123893) Mycobacterium smegmatis str. MC2 155 4537028 YP_888339.1 CDS MSMEG_4053 NC_008596.1 4124109 4126841 R identified by match to protein family HMM PF00196; transcriptional regulatory protein complement(4124109..4126841) Mycobacterium smegmatis str. MC2 155 4535520 YP_888340.1 CDS MSMEG_4054 NC_008596.1 4126850 4126984 R hypothetical protein complement(4126850..4126984) Mycobacterium smegmatis str. MC2 155 4534497 YP_888341.1 CDS MSMEG_4055 NC_008596.1 4127253 4128044 D identified by match to protein family HMM PF00106; short-chain dehydrogenase/reductase SDR 4127253..4128044 Mycobacterium smegmatis str. MC2 155 4533993 YP_888342.1 CDS MSMEG_4056 NC_008596.1 4128118 4128876 D hypothetical protein 4128118..4128876 Mycobacterium smegmatis str. MC2 155 4535513 YP_888343.1 CDS MSMEG_4057 NC_008596.1 4129302 4129928 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 4129302..4129928 Mycobacterium smegmatis str. MC2 155 4533107 YP_888344.1 CDS MSMEG_4058 NC_008596.1 4129996 4131315 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator superfamily protein 4129996..4131315 Mycobacterium smegmatis str. MC2 155 4535293 YP_888345.1 CDS MSMEG_4059 NC_008596.1 4131375 4132064 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01493; haloacid dehalogenase 4131375..4132064 Mycobacterium smegmatis str. MC2 155 4532907 YP_888346.1 CDS MSMEG_4061 NC_008596.1 4133329 4133757 D identified by match to protein family HMM PF01042; translation initiation inhibitor 4133329..4133757 Mycobacterium smegmatis str. MC2 155 4533266 YP_888347.1 CDS MSMEG_4062 NC_008596.1 4133790 4135040 D identified by match to protein family HMM PF01425; glutamyl-tRNA(Gln) amidotransferase subunit A 4133790..4135040 Mycobacterium smegmatis str. MC2 155 4535850 YP_888348.1 CDS MSMEG_4063 NC_008596.1 4135328 4136236 R identified by match to protein family HMM PF04909; amidohydrolase complement(4135328..4136236) Mycobacterium smegmatis str. MC2 155 4531798 YP_888349.1 CDS MSMEG_4064 NC_008596.1 4136734 4137735 R identified by match to protein family HMM PF00107; zinc-binding alcohol dehydrogenase complement(4136734..4137735) Mycobacterium smegmatis str. MC2 155 4537253 YP_888350.1 CDS MSMEG_4065 NC_008596.1 4138269 4139831 R identified by match to protein family HMM PF00501; feruloyl-CoA synthetase complement(4138269..4139831) Mycobacterium smegmatis str. MC2 155 4534564 YP_888351.1 CDS MSMEG_4066 NC_008596.1 4139932 4141287 R hypothetical protein complement(4139932..4141287) Mycobacterium smegmatis str. MC2 155 4535678 YP_888352.1 CDS MSMEG_4068 NC_008596.1 4141519 4141653 D hypothetical protein 4141519..4141653 Mycobacterium smegmatis str. MC2 155 4534075 YP_888353.1 CDS MSMEG_4067 NC_008596.1 4141631 4142620 R identified by match to protein family HMM PF00107; zinc-containing alcohol dehydrogenase superfamily protein complement(4141631..4142620) Mycobacterium smegmatis str. MC2 155 4534348 YP_888354.1 CDS MSMEG_4069 NC_008596.1 4142705 4142878 R hypothetical protein complement(4142705..4142878) Mycobacterium smegmatis str. MC2 155 4533994 YP_888355.1 CDS MSMEG_4070 NC_008596.1 4142735 4143292 D TetR family transcriptional regulator 4142735..4143292 Mycobacterium smegmatis str. MC2 155 4533119 YP_888356.1 CDS MSMEG_4072 NC_008596.1 4144114 4145160 D identified by similarity to GB:CAD18826.1; ISMsm5, transposase 4144114..4145160 Mycobacterium smegmatis str. MC2 155 4531593 YP_888357.1 CDS MSMEG_4074 NC_008596.1 4146668 4147465 D identified by match to protein family HMM PF00106; peroxisomal trans-2-enoyl-CoA reductase 4146668..4147465 Mycobacterium smegmatis str. MC2 155 4533815 YP_888358.1 CDS MSMEG_4075 NC_008596.1 4147462 4149525 D identified by match to protein family HMM PF02629; CoA-binding protein 4147462..4149525 Mycobacterium smegmatis str. MC2 155 4533433 YP_888359.1 CDS MSMEG_4076 NC_008596.1 4149545 4150744 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; butyryl-CoA dehydrogenase 4149545..4150744 Mycobacterium smegmatis str. MC2 155 4532590 YP_888360.1 CDS MSMEG_4077 NC_008596.1 4150741 4151499 D identified by match to protein family HMM PF00378; enoyl-CoA hydratase 4150741..4151499 Mycobacterium smegmatis str. MC2 155 4532237 YP_888361.1 CDS MSMEG_4078 NC_008596.1 4151496 4152893 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; metabolite transporter YaaU 4151496..4152893 Mycobacterium smegmatis str. MC2 155 4533788 YP_888362.1 CDS MSMEG_4079 NC_008596.1 4152916 4153683 R identified by match to protein family HMM PF00561; hydrolase complement(4152916..4153683) Mycobacterium smegmatis str. MC2 155 4533350 YP_888363.1 CDS MSMEG_4081 NC_008596.1 4155111 4156322 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase IS116/IS110/IS902 4155111..4156322 Mycobacterium smegmatis str. MC2 155 4533969 YP_888364.1 CDS MSMEG_4082 NC_008596.1 4157064 4158410 R monoxygenase complement(4157064..4158410) Mycobacterium smegmatis str. MC2 155 4535111 YP_888365.1 CDS MSMEG_4083 NC_008596.1 4158407 4159822 R monooxygenase complement(4158407..4159822) Mycobacterium smegmatis str. MC2 155 4535188 YP_888366.1 CDS MSMEG_4084 NC_008596.1 4159822 4160979 R identified by match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(4159822..4160979) Mycobacterium smegmatis str. MC2 155 4535409 YP_888367.1 CDS MSMEG_4085 NC_008596.1 4161044 4162327 R nitrilotriacetate monooxygenase component A complement(4161044..4162327) Mycobacterium smegmatis str. MC2 155 4536609 YP_888368.1 CDS ssuD NC_008596.1 4162324 4162905 R nitrilotriacetate monooxygenase component A complement(4162324..4162905) Mycobacterium smegmatis str. MC2 155 4537314 YP_888369.1 CDS MSMEG_4087 NC_008596.1 4162983 4164401 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator superfamily protein complement(4162983..4164401) Mycobacterium smegmatis str. MC2 155 4537142 YP_888370.1 CDS MSMEG_4088 NC_008596.1 4164825 4165133 D identified by match to protein family HMM PF01527; transposase 4164825..4165133 Mycobacterium smegmatis str. MC2 155 4534347 YP_888371.1 CDS MSMEG_4089 NC_008596.1 4165130 4165990 D identified by match to protein family HMM PF00665; transposase subunit 4165130..4165990 Mycobacterium smegmatis str. MC2 155 4533856 YP_888372.1 CDS MSMEG_4090 NC_008596.1 4166046 4166819 D identified by match to protein family HMM PF01614; IclR family protein transcriptional regulator 4166046..4166819 Mycobacterium smegmatis str. MC2 155 4532915 YP_888373.1 CDS ssuD NC_008596.1 4167383 4168717 R nitrilotriacetate monooxygenase component A complement(4167383..4168717) Mycobacterium smegmatis str. MC2 155 4537532 YP_888374.1 CDS MSMEG_4092 NC_008596.1 4168736 4169806 R identified by match to protein family HMM PF00296; alkanal monooxygenase complement(4168736..4169806) Mycobacterium smegmatis str. MC2 155 4535857 YP_888375.1 CDS MSMEG_4093 NC_008596.1 4169808 4170839 R identified by match to protein family HMM PF00248; oxidoreductase, aldo/keto reductase complement(4169808..4170839) Mycobacterium smegmatis str. MC2 155 4536466 YP_888376.1 CDS MSMEG_4094 NC_008596.1 4170932 4172143 R identified by match to protein family HMM PF00441; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(4170932..4172143) Mycobacterium smegmatis str. MC2 155 4533587 YP_888377.1 CDS MSMEG_4095 NC_008596.1 4172140 4173057 R monooxygenase complement(4172140..4173057) Mycobacterium smegmatis str. MC2 155 4533040 YP_888378.1 CDS ssuD NC_008596.1 4173054 4174289 R nitrilotriacetate monooxygenase component A complement(4173054..4174289) Mycobacterium smegmatis str. MC2 155 4534450 YP_888379.1 CDS MSMEG_4097 NC_008596.1 4174286 4175515 R identified by match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(4174286..4175515) Mycobacterium smegmatis str. MC2 155 4532678 YP_888380.1 CDS MSMEG_4098 NC_008596.1 4175512 4177173 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(4175512..4177173) Mycobacterium smegmatis str. MC2 155 4536319 YP_888381.1 CDS MSMEG_4099 NC_008596.1 4177170 4178078 R identified by match to protein family HMM PF00528; ABC transporter permease complement(4177170..4178078) Mycobacterium smegmatis str. MC2 155 4534924 YP_888382.1 CDS MSMEG_4100 NC_008596.1 4178075 4179127 R identified by match to protein family HMM PF00528; ABC transporter permease complement(4178075..4179127) Mycobacterium smegmatis str. MC2 155 4537549 YP_888383.1 CDS MSMEG_4101 NC_008596.1 4179138 4180772 R identified by match to protein family HMM PF00496; ABC transporter substrate-binding protein complement(4179138..4180772) Mycobacterium smegmatis str. MC2 155 4534536 YP_888384.1 CDS MSMEG_4102 NC_008596.1 4181131 4182240 D hypothetical protein 4181131..4182240 Mycobacterium smegmatis str. MC2 155 4536055 YP_888385.1 CDS MSMEG_4103 NC_008596.1 4182282 4183370 D identified by match to protein family HMM PF00296; alkanesulfonate monooxygenase 4182282..4183370 Mycobacterium smegmatis str. MC2 155 4537507 YP_888386.1 CDS MSMEG_4104 NC_008596.1 4183367 4184623 D identified by match to protein family HMM PF07690; transporter major facilitator family protein 4183367..4184623 Mycobacterium smegmatis str. MC2 155 4536629 YP_888387.1 CDS MSMEG_4105 NC_008596.1 4184704 4185564 R identified by match to protein family HMM PF00665; transposase subunit complement(4184704..4185564) Mycobacterium smegmatis str. MC2 155 4535090 YP_888388.1 CDS MSMEG_4106 NC_008596.1 4185561 4185869 R identified by match to protein family HMM PF01527; transposase complement(4185561..4185869) Mycobacterium smegmatis str. MC2 155 4537585 YP_888389.1 CDS MSMEG_4107 NC_008596.1 4185948 4186634 R phosphoglycerate mutase complement(4185948..4186634) Mycobacterium smegmatis str. MC2 155 4535600 YP_888390.1 CDS pntB NC_008596.1 4186644 4188083 R identified by similarity to SP:P07002; match to protein family HMM PF02233; NAD(P) transhydrogenase subunit beta complement(4186644..4188083) Mycobacterium smegmatis str. MC2 155 4535907 YP_888391.1 CDS pntA NC_008596.1 4188102 4189649 R forms a tetramer composed of 2 subunit alphas and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha complement(4188102..4189649) Mycobacterium smegmatis str. MC2 155 4535030 YP_888392.1 CDS MSMEG_4110 NC_008596.1 4189781 4190623 R identified by match to protein family HMM PF00725; match to protein family HMM PF02737; 3-hydroxyacyl-CoA dehydrogenase complement(4189781..4190623) Mycobacterium smegmatis str. MC2 155 4532256 YP_888393.1 CDS MSMEG_4111 NC_008596.1 4190676 4191806 R identified by match to protein family HMM PF02515; alpha-methylacyl-CoA racemase complement(4190676..4191806) Mycobacterium smegmatis str. MC2 155 4532573 YP_888394.1 CDS MSMEG_4112 NC_008596.1 4191803 4193470 R identified by match to protein family HMM PF00501; cyclohexanecarboxylate-CoA ligase complement(4191803..4193470) Mycobacterium smegmatis str. MC2 155 4531111 YP_888395.1 CDS MSMEG_4113 NC_008596.1 4193473 4194528 R identified by match to protein family HMM PF00441; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(4193473..4194528) Mycobacterium smegmatis str. MC2 155 4533449 YP_888396.1 CDS menB NC_008596.1 4194525 4195301 R identified by match to protein family HMM PF00378; naphthoate synthase complement(4194525..4195301) Mycobacterium smegmatis str. MC2 155 4533364 YP_888397.1 CDS MSMEG_4115 NC_008596.1 4195303 4196184 R identified by match to protein family HMM PF00725; match to protein family HMM PF02737; 3-hydroxybutyryl-CoA dehydrogenase complement(4195303..4196184) Mycobacterium smegmatis str. MC2 155 4535064 YP_888398.1 CDS MSMEG_4116 NC_008596.1 4196194 4197084 R identified by match to protein family HMM PF00725; match to protein family HMM PF02737; 3-hydroxybutyryl-CoA dehydrogenase complement(4196194..4197084) Mycobacterium smegmatis str. MC2 155 4535886 YP_888399.1 CDS MSMEG_4117 NC_008596.1 4197104 4197868 R identified by match to protein family HMM PF00106; 2-deoxy-D-gluconate 3-dehydrogenase complement(4197104..4197868) Mycobacterium smegmatis str. MC2 155 4535005 YP_888400.1 CDS MSMEG_4118 NC_008596.1 4197865 4199088 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(4197865..4199088) Mycobacterium smegmatis str. MC2 155 4534466 YP_888401.1 CDS MSMEG_4119 NC_008596.1 4199085 4199873 R identified by match to protein family HMM PF00378; 3-hydroxybutyryl-CoA dehydratase complement(4199085..4199873) Mycobacterium smegmatis str. MC2 155 4532692 YP_888402.1 CDS MSMEG_4120 NC_008596.1 4199870 4201099 R identified by match to protein family HMM PF02515; CAIB/BAIF family protein complement(4199870..4201099) Mycobacterium smegmatis str. MC2 155 4534727 YP_888403.1 CDS MSMEG_4121 NC_008596.1 4201359 4202099 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator complement(4201359..4202099) Mycobacterium smegmatis str. MC2 155 4536368 YP_888404.1 CDS MSMEG_4122 NC_008596.1 4202248 4203609 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator family protein transporter complement(4202248..4203609) Mycobacterium smegmatis str. MC2 155 4533388 YP_888405.1 CDS MSMEG_4123 NC_008596.1 4203971 4204870 D identified by match to protein family HMM PF03446; 3-hydroxyisobutyrate dehydrogenase 4203971..4204870 Mycobacterium smegmatis str. MC2 155 4531698 YP_888406.1 CDS MSMEG_4124 NC_008596.1 4204972 4206159 D hypothetical protein 4204972..4206159 Mycobacterium smegmatis str. MC2 155 4535918 YP_888407.1 CDS MSMEG_4125 NC_008596.1 4206211 4206993 R identified by match to protein family HMM PF00106; oxidoreductase, short chain dehydrogenase/reductase complement(4206211..4206993) Mycobacterium smegmatis str. MC2 155 4534580 YP_888408.1 CDS MSMEG_4126 NC_008596.1 4207206 4207916 D identified by match to protein family HMM PF00857; hydrolase, isochorismatase 4207206..4207916 Mycobacterium smegmatis str. MC2 155 4533750 YP_888409.1 CDS MSMEG_4127 NC_008596.1 4208139 4209542 R identified by match to protein family HMM PF01609; TnpC protein complement(4208139..4209542) Mycobacterium smegmatis str. MC2 155 4532822 YP_888410.1 CDS MSMEG_4128 NC_008596.1 4209578 4210414 R hypothetical protein complement(4209578..4210414) Mycobacterium smegmatis str. MC2 155 4537255 YP_888411.1 CDS MSMEG_4129 NC_008596.1 4210513 4211103 D hypothetical protein 4210513..4211103 Mycobacterium smegmatis str. MC2 155 4536187 YP_888412.1 CDS MSMEG_4131 NC_008596.1 4211146 4211262 D hypothetical protein 4211146..4211262 Mycobacterium smegmatis str. MC2 155 4534247 YP_888413.1 CDS MSMEG_4130 NC_008596.1 4211259 4212110 R identified by match to protein family HMM PF01522; polysaccharide deacetylase complement(4211259..4212110) Mycobacterium smegmatis str. MC2 155 4531086 YP_888414.1 CDS MSMEG_4132 NC_008596.1 4212404 4212793 D transposase 4212404..4212793 Mycobacterium smegmatis str. MC2 155 4532191 YP_888415.1 CDS MSMEG_4133 NC_008596.1 4212793 4213806 D identified by match to protein family HMM PF00665; transposase 4212793..4213806 Mycobacterium smegmatis str. MC2 155 4532460 YP_888416.1 CDS MSMEG_4135 NC_008596.1 4215569 4216120 R identified by match to protein family HMM PF03641; lysine decarboxylase superfamily protein complement(4215569..4216120) Mycobacterium smegmatis str. MC2 155 4537407 YP_888417.1 CDS MSMEG_4136 NC_008596.1 4216158 4216742 R dTDP-glucose 4,6-dehydratase complement(4216158..4216742) Mycobacterium smegmatis str. MC2 155 4532487 YP_888418.1 CDS MSMEG_4137 NC_008596.1 4216742 4216960 R hypothetical protein complement(4216742..4216960) Mycobacterium smegmatis str. MC2 155 4531414 YP_888419.1 CDS MSMEG_4138 NC_008596.1 4217351 4218319 D identified by match to protein family HMM PF00795; aliphatic nitrilase 4217351..4218319 Mycobacterium smegmatis str. MC2 155 4534066 YP_888420.1 CDS MSMEG_4140 NC_008596.1 4219709 4221142 D identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 4219709..4221142 Mycobacterium smegmatis str. MC2 155 4530963 YP_888421.1 CDS MSMEG_4141 NC_008596.1 4221338 4222225 D hypothetical protein 4221338..4222225 Mycobacterium smegmatis str. MC2 155 4536200 YP_888422.1 CDS MSMEG_4142 NC_008596.1 4222396 4223022 R TetR family transcriptional regulator complement(4222396..4223022) Mycobacterium smegmatis str. MC2 155 4531483 YP_888423.1 CDS MSMEG_4143 NC_008596.1 4223158 4223451 D identified by match to protein family HMM PF07045; hypothetical protein 4223158..4223451 Mycobacterium smegmatis str. MC2 155 4532168 YP_888424.1 CDS MSMEG_4144 NC_008596.1 4223495 4224433 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 4223495..4224433 Mycobacterium smegmatis str. MC2 155 4537536 YP_888425.1 CDS MSMEG_4145 NC_008596.1 4224738 4225301 R identified by match to protein family HMM PF07883; cupin complement(4224738..4225301) Mycobacterium smegmatis str. MC2 155 4531775 YP_888426.1 CDS MSMEG_4146 NC_008596.1 4225664 4226641 D identified by match to protein family HMM PF00107; quinone oxidoreductase 4225664..4226641 Mycobacterium smegmatis str. MC2 155 4535826 YP_888427.1 CDS MSMEG_4147 NC_008596.1 4226696 4227970 D identified by match to protein family HMM PF07690; major facilitator superfamily protein 4226696..4227970 Mycobacterium smegmatis str. MC2 155 4531730 YP_888428.1 CDS MSMEG_4148 NC_008596.1 4228090 4229016 R identified by match to protein family HMM PF07859; lipase complement(4228090..4229016) Mycobacterium smegmatis str. MC2 155 4536901 YP_888429.1 CDS MSMEG_4149 NC_008596.1 4229192 4230127 D catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase 4229192..4230127 Mycobacterium smegmatis str. MC2 155 4533316 YP_888430.1 CDS MSMEG_4150 NC_008596.1 4230124 4231164 D catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase 4230124..4231164 Mycobacterium smegmatis str. MC2 155 4533167 YP_888431.1 CDS MSMEG_4151 NC_008596.1 4231173 4231424 R hypothetical protein complement(4231173..4231424) Mycobacterium smegmatis str. MC2 155 4536225 YP_888432.1 CDS MSMEG_4152 NC_008596.1 4231421 4232374 R identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; phenoxybenzoate dioxygenase subunit beta complement(4231421..4232374) Mycobacterium smegmatis str. MC2 155 4535704 YP_888433.1 CDS MSMEG_4153 NC_008596.1 4232377 4232835 R cytochrome P450 complement(4232377..4232835) Mycobacterium smegmatis str. MC2 155 4533009 YP_888434.1 CDS MSMEG_4154 NC_008596.1 4232893 4234068 D identified by match to protein family HMM PF00872; transposase, Mutator family protein 4232893..4234068 Mycobacterium smegmatis str. MC2 155 4536651 YP_888435.1 CDS MSMEG_4155 NC_008596.1 4234097 4235137 D identified by match to protein family HMM PF00589; match to protein family HMM PF02899; transposase A 4234097..4235137 Mycobacterium smegmatis str. MC2 155 4537188 YP_888436.1 CDS MSMEG_4156 NC_008596.1 4235134 4237359 D identified by match to protein family HMM PF00589; transposase 4235134..4237359 Mycobacterium smegmatis str. MC2 155 4534908 YP_888437.1 CDS MSMEG_4157 NC_008596.1 4237349 4237777 D transposase 4237349..4237777 Mycobacterium smegmatis str. MC2 155 4537725 YP_888438.1 CDS MSMEG_4158 NC_008596.1 4237954 4238103 D transposase 4237954..4238103 Mycobacterium smegmatis str. MC2 155 4535794 YP_888439.1 CDS MSMEG_4159 NC_008596.1 4238141 4239460 R identified by similarity to SP:P35883; match to protein family HMM PF00872; IS6120, transposase complement(4238141..4239460) Mycobacterium smegmatis str. MC2 155 4533452 YP_888440.1 CDS MSMEG_4160 NC_008596.1 4239604 4239756 R hypothetical protein complement(4239604..4239756) Mycobacterium smegmatis str. MC2 155 4534853 YP_888441.1 CDS MSMEG_4161 NC_008596.1 4239712 4240125 D hypothetical protein 4239712..4240125 Mycobacterium smegmatis str. MC2 155 4537623 YP_888442.1 CDS MSMEG_4162 NC_008596.1 4240426 4241589 R identified by match to protein family HMM PF06187; hypothetical protein complement(4240426..4241589) Mycobacterium smegmatis str. MC2 155 4536354 YP_888443.1 CDS MSMEG_4163 NC_008596.1 4241589 4242311 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; 3-oxoacyl-ACP reductase complement(4241589..4242311) Mycobacterium smegmatis str. MC2 155 4531761 YP_888444.1 CDS MSMEG_4164 NC_008596.1 4242311 4243027 R identified by match to protein family HMM PF00378; 3-hydroxybutyryl-CoA dehydratase complement(4242311..4243027) Mycobacterium smegmatis str. MC2 155 4532898 YP_888445.1 CDS MSMEG_4165 NC_008596.1 4243036 4244478 R identified by match to protein family HMM PF00171; [NAD+] benzaldehyde dehydrogenase complement(4243036..4244478) Mycobacterium smegmatis str. MC2 155 4533092 YP_888446.1 CDS MSMEG_4166 NC_008596.1 4244495 4245649 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(4244495..4245649) Mycobacterium smegmatis str. MC2 155 4536636 YP_888447.1 CDS MSMEG_4167 NC_008596.1 4245646 4246779 R identified by match to protein family HMM PF00107; alcohol dehydrogenase complement(4245646..4246779) Mycobacterium smegmatis str. MC2 155 4532281 YP_888448.1 CDS MSMEG_4168 NC_008596.1 4246781 4248370 R identified by match to protein family HMM PF01144; propionate CoA-transferase complement(4246781..4248370) Mycobacterium smegmatis str. MC2 155 4534496 YP_888449.1 CDS MSMEG_4169 NC_008596.1 4248367 4249077 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; 3-oxoacyl-ACP reductase complement(4248367..4249077) Mycobacterium smegmatis str. MC2 155 4534658 YP_888450.1 CDS MSMEG_4170 NC_008596.1 4249070 4250605 R identified by match to protein family HMM PF00005; ribose transport ATP-binding protein RbsA complement(4249070..4250605) Mycobacterium smegmatis str. MC2 155 4537089 YP_888451.1 CDS MSMEG_4171 NC_008596.1 4250602 4251639 R identified by match to protein family HMM PF02653; ribose transporter permease RbsC complement(4250602..4251639) Mycobacterium smegmatis str. MC2 155 4533193 YP_888452.1 CDS MSMEG_4172 NC_008596.1 4251653 4252771 R identified by match to protein family HMM PF00532; D-ribose-binding periplasmic protein RbsB complement(4251653..4252771) Mycobacterium smegmatis str. MC2 155 4536608 YP_888453.1 CDS MSMEG_4173 NC_008596.1 4252768 4253202 R identified by match to protein family HMM PF01575; MaoC family protein complement(4252768..4253202) Mycobacterium smegmatis str. MC2 155 4531481 YP_888454.1 CDS MSMEG_4174 NC_008596.1 4253199 4253996 R identified by match to protein family HMM PF01614; IclR family transcriptional regulator complement(4253199..4253996) Mycobacterium smegmatis str. MC2 155 4536119 YP_888455.1 CDS MSMEG_4175 NC_008596.1 4254189 4254506 D identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 4254189..4254506 Mycobacterium smegmatis str. MC2 155 4534750 YP_888456.1 CDS MSMEG_4176 NC_008596.1 4254503 4255015 D hypothetical protein 4254503..4255015 Mycobacterium smegmatis str. MC2 155 4534402 YP_888457.1 CDS MSMEG_4178 NC_008596.1 4255057 4255647 D flavodoxin/nitric oxide synthase 4255057..4255647 Mycobacterium smegmatis str. MC2 155 4536940 YP_888458.1 CDS MSMEG_4179 NC_008596.1 4256984 4257466 R integral membrane protein complement(4256984..4257466) Mycobacterium smegmatis str. MC2 155 4533351 YP_888459.1 CDS hisG NC_008596.1 4257530 4258396 R long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase complement(4257530..4258396) Mycobacterium smegmatis str. MC2 155 4535239 YP_888460.1 CDS hisE NC_008596.1 4258399 4258680 R catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase complement(4258399..4258680) Mycobacterium smegmatis str. MC2 155 4531059 YP_888461.1 CDS MSMEG_4182 NC_008596.1 4258730 4260226 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879; arabinose-proton symporter complement(4258730..4260226) Mycobacterium smegmatis str. MC2 155 4534892 YP_888462.1 CDS MSMEG_4183 NC_008596.1 4260273 4260950 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; phosphoglycolate phosphatase complement(4260273..4260950) Mycobacterium smegmatis str. MC2 155 4534371 YP_888463.1 CDS MSMEG_4184 NC_008596.1 4261027 4261209 D dTDP-glucose-46-dehydratase 4261027..4261209 Mycobacterium smegmatis str. MC2 155 4536665 YP_888464.1 CDS metH NC_008596.1 4261269 4265009 R one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase complement(4261269..4265009) Mycobacterium smegmatis str. MC2 155 4536551 YP_888465.1 CDS MSMEG_4186 NC_008596.1 4265484 4266362 D identified by match to protein family HMM PF01908; hypothetical protein 4265484..4266362 Mycobacterium smegmatis str. MC2 155 4534393 YP_888466.1 CDS MSMEG_4187 NC_008596.1 4266384 4267841 R identified by match to protein family HMM PF06742; match to protein family HMM PF06863; hypothetical protein complement(4266384..4267841) Mycobacterium smegmatis str. MC2 155 4531494 YP_888467.1 CDS MSMEG_4188 NC_008596.1 4267841 4268728 R identified by match to protein family HMM PF00106; short chain dehydrogenase complement(4267841..4268728) Mycobacterium smegmatis str. MC2 155 4535690 YP_888468.1 CDS cysS NC_008596.1 4268754 4269992 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(4268754..4269992) Mycobacterium smegmatis str. MC2 155 4534157 YP_888469.1 CDS MSMEG_4190 NC_008596.1 4270116 4270877 R identified by match to protein family HMM PF00459; inositol monophosphatase complement(4270116..4270877) Mycobacterium smegmatis str. MC2 155 4531233 YP_888470.1 CDS MSMEG_4191 NC_008596.1 4271019 4271867 R hypothetical protein complement(4271019..4271867) Mycobacterium smegmatis str. MC2 155 4533125 YP_888471.1 CDS MSMEG_4192 NC_008596.1 4271851 4272438 R hypothetical protein complement(4271851..4272438) Mycobacterium smegmatis str. MC2 155 4537486 YP_888472.1 CDS MSMEG_4193 NC_008596.1 4272474 4273145 R identified by match to protein family HMM PF00300; phosphoglycerate mutase complement(4272474..4273145) Mycobacterium smegmatis str. MC2 155 4534900 YP_888473.1 CDS MSMEG_4194 NC_008596.1 4273156 4273986 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters UDP disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase complement(4273156..4273986) Mycobacterium smegmatis str. MC2 155 4531825 YP_888474.1 CDS MSMEG_4195 NC_008596.1 4274087 4274392 R hypothetical protein complement(4274087..4274392) Mycobacterium smegmatis str. MC2 155 4534590 YP_888475.1 CDS MSMEG_4196 NC_008596.1 4274534 4275574 D LppL protein 4274534..4275574 Mycobacterium smegmatis str. MC2 155 4534702 YP_888476.1 CDS MSMEG_4197 NC_008596.1 4275571 4275840 D hypothetical protein 4275571..4275840 Mycobacterium smegmatis str. MC2 155 4531035 YP_888477.1 CDS pyrD NC_008596.1 4275837 4276901 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 4275837..4276901 Mycobacterium smegmatis str. MC2 155 4535978 YP_888478.1 CDS MSMEG_4199 NC_008596.1 4276933 4277454 R identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481; hypothetical protein complement(4276933..4277454) Mycobacterium smegmatis str. MC2 155 4532852 YP_888479.1 CDS MSMEG_4200 NC_008596.1 4277491 4278825 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; hypothetical protein complement(4277491..4278825) Mycobacterium smegmatis str. MC2 155 4536553 YP_888480.1 CDS MSMEG_4202 NC_008596.1 4279122 4280453 R hypothetical protein complement(4279122..4280453) Mycobacterium smegmatis str. MC2 155 4531858 YP_888481.1 CDS MSMEG_4203 NC_008596.1 4280469 4282310 R identified by match to protein family HMM PF00082; peptidase S8/S53 subtilisin kexin sedolisin complement(4280469..4282310) Mycobacterium smegmatis str. MC2 155 4531018 YP_888482.1 CDS MSMEG_4204 NC_008596.1 4282640 4283755 D catalase 4282640..4283755 Mycobacterium smegmatis str. MC2 155 4531149 YP_888483.1 CDS MSMEG_4205 NC_008596.1 4283833 4286454 D identified by match to protein family HMM PF00196; match to protein family HMM PF07721; transcriptional regulator 4283833..4286454 Mycobacterium smegmatis str. MC2 155 4536401 YP_888484.1 CDS MSMEG_4207 NC_008596.1 4290634 4291026 R identified by match to protein family HMM PF00582; universal stress protein family protein complement(4290634..4291026) Mycobacterium smegmatis str. MC2 155 4533112 YP_888485.1 CDS MSMEG_4208 NC_008596.1 4291023 4292567 R identified by match to protein family HMM PF01970; integral membrane protein complement(4291023..4292567) Mycobacterium smegmatis str. MC2 155 4531993 YP_888486.1 CDS MSMEG_4209 NC_008596.1 4292564 4293100 R integral membrane protein complement(4292564..4293100) Mycobacterium smegmatis str. MC2 155 4536893 YP_888487.1 CDS MSMEG_4210 NC_008596.1 4293097 4294080 R identified by match to protein family HMM PF03401; hypothetical protein complement(4293097..4294080) Mycobacterium smegmatis str. MC2 155 4533207 YP_888488.1 CDS MSMEG_4211 NC_008596.1 4294185 4295864 D identified by match to protein family HMM PF02518; two component system histidine kinase 4294185..4295864 Mycobacterium smegmatis str. MC2 155 4535220 YP_888489.1 CDS MSMEG_4212 NC_008596.1 4295857 4296519 D identified by match to protein family HMM PF00072; transcriptional regulatory protein CitT 4295857..4296519 Mycobacterium smegmatis str. MC2 155 4531583 YP_888490.1 CDS MSMEG_4213 NC_008596.1 4296613 4297770 D identified by match to protein family HMM PF00067; cytochrome P450 hydroxylase 4296613..4297770 Mycobacterium smegmatis str. MC2 155 4532331 YP_888491.1 CDS MSMEG_4214 NC_008596.1 4297888 4298610 D glutamine amidotransferase 4297888..4298610 Mycobacterium smegmatis str. MC2 155 4534275 YP_888492.1 CDS MSMEG_4215 NC_008596.1 4298656 4299333 D identified by match to protein family HMM PF00156; phosphoribosyltransferase 4298656..4299333 Mycobacterium smegmatis str. MC2 155 4531951 YP_888493.1 CDS MSMEG_4216 NC_008596.1 4299335 4299844 R hypothetical protein complement(4299335..4299844) Mycobacterium smegmatis str. MC2 155 4537197 YP_888494.1 CDS MSMEG_4217 NC_008596.1 4299939 4300757 R identified by match to protein family HMM PF05103; DivIVA protein complement(4299939..4300757) Mycobacterium smegmatis str. MC2 155 4532396 YP_888495.1 CDS MSMEG_4218 NC_008596.1 4300998 4301288 R transmembrane protein complement(4300998..4301288) Mycobacterium smegmatis str. MC2 155 4533030 YP_888496.1 CDS MSMEG_4219 NC_008596.1 4301451 4302095 R identified by match to protein family HMM PF04472; hypothetical protein complement(4301451..4302095) Mycobacterium smegmatis str. MC2 155 4535339 YP_888497.1 CDS MSMEG_4220 NC_008596.1 4302079 4302954 R identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein complement(4302079..4302954) Mycobacterium smegmatis str. MC2 155 4532966 YP_888498.1 CDS MSMEG_4221 NC_008596.1 4302930 4303643 R identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein complement(4302930..4303643) Mycobacterium smegmatis str. MC2 155 4534202 YP_888499.1 CDS MSMEG_4223 NC_008596.1 4303589 4303702 D hypothetical protein 4303589..4303702 Mycobacterium smegmatis str. MC2 155 4537087 YP_888500.1 CDS ftsZ NC_008596.1 4303689 4304846 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(4303689..4304846) Mycobacterium smegmatis str. MC2 155 4534205 YP_888501.1 CDS MSMEG_4224 NC_008596.1 4304832 4304960 D hypothetical protein 4304832..4304960 Mycobacterium smegmatis str. MC2 155 4535270 YP_888502.1 CDS MSMEG_4225 NC_008596.1 4305093 4306094 R identified by match to protein family HMM PF03799; cell division protein FtsQ complement(4305093..4306094) Mycobacterium smegmatis str. MC2 155 4535277 YP_888503.1 CDS murC NC_008596.1 4306091 4307539 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(4306091..4307539) Mycobacterium smegmatis str. MC2 155 4537247 YP_888504.1 CDS murG NC_008596.1 4307536 4308693 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDPdiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(4307536..4308693) Mycobacterium smegmatis str. MC2 155 4536010 YP_888505.1 CDS ftsW NC_008596.1 4308690 4310396 R identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; cell division protein FtsW complement(4308690..4310396) Mycobacterium smegmatis str. MC2 155 4535530 YP_888506.1 CDS murD NC_008596.1 4310401 4311882 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(4310401..4311882) Mycobacterium smegmatis str. MC2 155 4531703 YP_888507.1 CDS mraY NC_008596.1 4311875 4312954 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(4311875..4312954) Mycobacterium smegmatis str. MC2 155 4533495 YP_888508.1 CDS MSMEG_4231 NC_008596.1 4312951 4314480 R identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(4312951..4314480) Mycobacterium smegmatis str. MC2 155 4531155 YP_888509.1 CDS murE NC_008596.1 4314477 4316039 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(4314477..4316039) Mycobacterium smegmatis str. MC2 155 4532765 YP_888510.1 CDS MSMEG_4233 NC_008596.1 4316086 4318032 R identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin binding protein transpeptidase domain-containing protein complement(4316086..4318032) Mycobacterium smegmatis str. MC2 155 4531550 YP_888511.1 CDS MSMEG_4234 NC_008596.1 4318029 4319171 R hypothetical protein complement(4318029..4319171) Mycobacterium smegmatis str. MC2 155 4535846 YP_888512.1 CDS mraW NC_008596.1 4319171 4320151 R identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW complement(4319171..4320151) Mycobacterium smegmatis str. MC2 155 4537686 YP_888513.1 CDS mraZ NC_008596.1 4320309 4320740 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(4320309..4320740) Mycobacterium smegmatis str. MC2 155 4533268 YP_888514.1 CDS MSMEG_4237 NC_008596.1 4321263 4321664 R transmembrane protein complement(4321263..4321664) Mycobacterium smegmatis str. MC2 155 4534040 YP_888515.1 CDS MSMEG_4238 NC_008596.1 4321921 4322538 D hypothetical protein 4321921..4322538 Mycobacterium smegmatis str. MC2 155 4531632 YP_888516.1 CDS MSMEG_4239 NC_008596.1 4322593 4323288 D LppM protein 4322593..4323288 Mycobacterium smegmatis str. MC2 155 4534956 YP_888517.1 CDS MSMEG_4240 NC_008596.1 4323431 4324519 D identified by match to protein family HMM PF00348; polyprenyl synthetase 4323431..4324519 Mycobacterium smegmatis str. MC2 155 4535492 YP_888518.1 CDS MSMEG_4241 NC_008596.1 4324544 4326061 D integral membrane protein 4324544..4326061 Mycobacterium smegmatis str. MC2 155 4537700 YP_888519.1 CDS MSMEG_4242 NC_008596.1 4326128 4326532 R transcriptional regulatory protein complement(4326128..4326532) Mycobacterium smegmatis str. MC2 155 4531844 YP_888520.1 CDS MSMEG_4243 NC_008596.1 4326578 4327846 D identified by match to protein family HMM PF00069; match to protein family HMM PF01163; serine/threonine protein kinase 4326578..4327846 Mycobacterium smegmatis str. MC2 155 4533717 YP_888521.1 CDS MSMEG_4244 NC_008596.1 4327868 4329262 R identified by match to protein family HMM PF01474; match to protein family HMM TIGR01358; 3-deoxy-7-phosphoheptulonate synthase complement(4327868..4329262) Mycobacterium smegmatis str. MC2 155 4537458 YP_888522.1 CDS MSMEG_4245 NC_008596.1 4329267 4329776 R hypothetical protein complement(4329267..4329776) Mycobacterium smegmatis str. MC2 155 4536705 YP_888523.1 CDS MSMEG_4246 NC_008596.1 4329722 4330684 R integral membrane protein complement(4329722..4330684) Mycobacterium smegmatis str. MC2 155 4537107 YP_888524.1 CDS MSMEG_4247 NC_008596.1 4330759 4332081 D integral membrane protein 4330759..4332081 Mycobacterium smegmatis str. MC2 155 4533530 YP_888525.1 CDS MSMEG_4248 NC_008596.1 4332098 4332823 R identified by match to protein family HMM PF01553; 1-acylglycerol-3-phosphate O-acyltransferase complement(4332098..4332823) Mycobacterium smegmatis str. MC2 155 4534395 YP_888526.1 CDS MSMEG_4249 NC_008596.1 4332930 4333337 R hypothetical protein complement(4332930..4333337) Mycobacterium smegmatis str. MC2 155 4533349 YP_888527.1 CDS MSMEG_4250 NC_008596.1 4333334 4334611 R identified by match to protein family HMM PF02374; membrane transport ATPase complement(4333334..4334611) Mycobacterium smegmatis str. MC2 155 4530952 YP_888528.1 CDS MSMEG_4251 NC_008596.1 4334612 4335049 R identified by match to protein family HMM PF03364; cyclase/dehydrase complement(4334612..4335049) Mycobacterium smegmatis str. MC2 155 4536595 YP_888529.1 CDS MSMEG_4252 NC_008596.1 4335143 4335532 R hypothetical protein complement(4335143..4335532) Mycobacterium smegmatis str. MC2 155 4534394 YP_888530.1 CDS MSMEG_4254 NC_008596.1 4335624 4337423 D identified by match to protein family HMM PF00501; AMP-binding protein 4335624..4337423 Mycobacterium smegmatis str. MC2 155 4537575 YP_888531.1 CDS MSMEG_4253 NC_008596.1 4337414 4338562 R identified by match to protein family HMM PF00534; glycoside hydrolase family protein complement(4337414..4338562) Mycobacterium smegmatis str. MC2 155 4536134 YP_888532.1 CDS MSMEG_4255 NC_008596.1 4338603 4339400 R hypothetical protein complement(4338603..4339400) Mycobacterium smegmatis str. MC2 155 4531112 YP_888533.1 CDS MSMEG_4256 NC_008596.1 4339480 4340625 R identified by match to protein family HMM PF00877; NLP/P60 family protein complement(4339480..4340625) Mycobacterium smegmatis str. MC2 155 4530869 YP_888534.1 CDS MSMEG_4257 NC_008596.1 4340779 4341150 R hypothetical protein complement(4340779..4341150) Mycobacterium smegmatis str. MC2 155 4530967 YP_888535.1 CDS MSMEG_4259 NC_008596.1 4341162 4343180 D contains 3'-5'exonuclease domain; hypothetical protein 4341162..4343180 Mycobacterium smegmatis str. MC2 155 4536238 YP_888536.1 CDS trpD NC_008596.1 4343055 4344149 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(4343055..4344149) Mycobacterium smegmatis str. MC2 155 4534292 YP_888537.1 CDS MSMEG_4260 NC_008596.1 4344261 4344872 D identified by match to protein family HMM PF00510; cytochrome C oxidase subunit 3 4344261..4344872 Mycobacterium smegmatis str. MC2 155 4535511 YP_888538.1 CDS MSMEG_4261 NC_008596.1 4344911 4345717 D identified by match to protein family HMM PF00034; ubiquinol-cytochrome C reductase cytochrome C subunit 4344911..4345717 Mycobacterium smegmatis str. MC2 155 4534034 YP_888539.1 CDS MSMEG_4262 NC_008596.1 4345696 4346922 D identified by match to protein family HMM PF00355; ubiquinol-cytochrome C reductase iron-sulfur subunit 4345696..4346922 Mycobacterium smegmatis str. MC2 155 4537735 YP_888540.1 CDS MSMEG_4263 NC_008596.1 4346919 4348559 D identified by match to protein family HMM PF00033; ubiquinol-cytochrome C reductase cytochrome b subunit 4346919..4348559 Mycobacterium smegmatis str. MC2 155 4535113 YP_888541.1 CDS MSMEG_4264 NC_008596.1 4349138 4349701 R hypothetical protein complement(4349138..4349701) Mycobacterium smegmatis str. MC2 155 4531946 YP_888542.1 CDS MSMEG_4265 NC_008596.1 4349701 4350594 R MmpS3 protein complement(4349701..4350594) Mycobacterium smegmatis str. MC2 155 4531475 YP_888543.1 CDS MSMEG_4266 NC_008596.1 4350575 4350724 D hypothetical protein 4350575..4350724 Mycobacterium smegmatis str. MC2 155 4532970 YP_888544.1 CDS MSMEG_4267 NC_008596.1 4350770 4351189 R cytochrome C oxidase polypeptide 4 complement(4350770..4351189) Mycobacterium smegmatis str. MC2 155 4537383 YP_888545.1 CDS MSMEG_4268 NC_008596.1 4351209 4352234 R identified by match to protein family HMM PF00116; cytochrome C oxidase subunit 2 complement(4351209..4352234) Mycobacterium smegmatis str. MC2 155 4532360 YP_888546.1 CDS asnB NC_008596.1 4352394 4354370 D identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; asparagine synthase 4352394..4354370 Mycobacterium smegmatis str. MC2 155 4537630 YP_888547.1 CDS MSMEG_4270 NC_008596.1 4354392 4355369 R identified by match to protein family HMM PF00294; adenosine kinase complement(4354392..4355369) Mycobacterium smegmatis str. MC2 155 4534661 YP_888548.1 CDS MSMEG_4271 NC_008596.1 4355564 4356217 D hypothetical protein 4355564..4356217 Mycobacterium smegmatis str. MC2 155 4535308 YP_888549.1 CDS MSMEG_4272 NC_008596.1 4356255 4356611 R identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; HesB/YadR/YfhF family protein complement(4356255..4356611) Mycobacterium smegmatis str. MC2 155 4533082 YP_888550.1 CDS MSMEG_4273 NC_008596.1 4356838 4357524 D integral membrane protein 4356838..4357524 Mycobacterium smegmatis str. MC2 155 4536960 YP_888551.1 CDS cobU NC_008596.1 4357558 4358091 D identified by match to protein family HMM PF02283; cobinamide kinase / cobinamide phosphate guanyltransferase 4357558..4358091 Mycobacterium smegmatis str. MC2 155 4536839 YP_888552.1 CDS cobT NC_008596.1 4358088 4359143 D catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 4358088..4359143 Mycobacterium smegmatis str. MC2 155 4534942 YP_888553.1 CDS cobS NC_008596.1 4359163 4359888 D catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 4359163..4359888 Mycobacterium smegmatis str. MC2 155 4533960 YP_888554.1 CDS ilvE NC_008596.1 4359885 4360991 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(4359885..4360991) Mycobacterium smegmatis str. MC2 155 4532447 YP_888555.1 CDS gcvT NC_008596.1 4361041 4362138 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(4361041..4362138) Mycobacterium smegmatis str. MC2 155 4531056 YP_888556.1 CDS MSMEG_4279 NC_008596.1 4362195 4363286 D identified by match to protein family HMM PF00211; adenylate and guanylate cyclase catalytic domain-containing protein 4362195..4363286 Mycobacterium smegmatis str. MC2 155 4535150 YP_888557.1 CDS MSMEG_4281 NC_008596.1 4363291 4364850 D catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 4363291..4364850 Mycobacterium smegmatis str. MC2 155 4533852 YP_888558.1 CDS MSMEG_4280 NC_008596.1 4364847 4366583 R identified by match to protein family HMM PF00106; match to protein family HMM PF00561; short chain dehydrogenase complement(4364847..4366583) Mycobacterium smegmatis str. MC2 155 4535419 YP_888559.1 CDS MSMEG_4282 NC_008596.1 4366658 4367005 R hypothetical protein complement(4366658..4367005) Mycobacterium smegmatis str. MC2 155 4532349 YP_888560.1 CDS sucB NC_008596.1 4367210 4368967 D identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR02927; dihydrolipoamide acetyltransferase 4367210..4368967 Mycobacterium smegmatis str. MC2 155 4537128 YP_888561.1 CDS MSMEG_4284 NC_008596.1 4369020 4369928 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM TIGR01777; hypothetical protein 4369020..4369928 Mycobacterium smegmatis str. MC2 155 4534285 YP_888562.1 CDS lipB NC_008596.1 4369946 4370632 D lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system protein H; lipoate-protein ligase B 4369946..4370632 Mycobacterium smegmatis str. MC2 155 4535210 YP_888563.1 CDS lipA NC_008596.1 4370637 4371581 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 4370637..4371581 Mycobacterium smegmatis str. MC2 155 4533770 YP_888564.1 CDS MSMEG_4287 NC_008596.1 4371586 4372338 D integral membrane protein 4371586..4372338 Mycobacterium smegmatis str. MC2 155 4537191 YP_888565.1 CDS MSMEG_4289 NC_008596.1 4372372 4374180 D identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase 4372372..4374180 Mycobacterium smegmatis str. MC2 155 4537221 YP_888566.1 CDS MSMEG_4288 NC_008596.1 4374158 4374631 R identified by match to protein family HMM PF06271; integral membrane protein complement(4374158..4374631) Mycobacterium smegmatis str. MC2 155 4533836 YP_888567.1 CDS glnA NC_008596.1 4374853 4376289 D identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase 4374853..4376289 Mycobacterium smegmatis str. MC2 155 4532067 YP_888568.1 CDS dtd NC_008596.1 4376518 4376949 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 4376518..4376949 Mycobacterium smegmatis str. MC2 155 4534728 YP_888569.1 CDS MSMEG_4292 NC_008596.1 4376977 4377387 D identified by match to protein family HMM PF07681; integral membrane protein 4376977..4377387 Mycobacterium smegmatis str. MC2 155 4535037 YP_888570.1 CDS MSMEG_4293 NC_008596.1 4377492 4380491 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(4377492..4380491) Mycobacterium smegmatis str. MC2 155 4532101 YP_888571.1 CDS glnA NC_008596.1 4380541 4381881 R identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase complement(4380541..4381881) Mycobacterium smegmatis str. MC2 155 4533434 YP_888572.1 CDS MSMEG_4295 NC_008596.1 4381934 4383436 R identified by match to protein family HMM PF00561; alpha/beta hydrolase complement(4381934..4383436) Mycobacterium smegmatis str. MC2 155 4536445 YP_888573.1 CDS MSMEG_4296 NC_008596.1 4383565 4385097 R identified by match to protein family HMM PF00561; protease complement(4383565..4385097) Mycobacterium smegmatis str. MC2 155 4536069 YP_888574.1 CDS MSMEG_4297 NC_008596.1 4385129 4386526 R identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946; acyltransferase complement(4385129..4386526) Mycobacterium smegmatis str. MC2 155 4534256 YP_888575.1 CDS panB NC_008596.1 4386689 4387552 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 4386689..4387552 Mycobacterium smegmatis str. MC2 155 4535698 YP_888576.1 CDS MSMEG_4299 NC_008596.1 4387638 4388423 R identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase complement(4387638..4388423) Mycobacterium smegmatis str. MC2 155 4535606 YP_888577.1 CDS MSMEG_4300 NC_008596.1 4388435 4389112 R identified by match to protein family HMM PF00440; transcription regulator AmtR complement(4388435..4389112) Mycobacterium smegmatis str. MC2 155 4532998 YP_888578.1 CDS MSMEG_4301 NC_008596.1 4389120 4390904 R activates fatty acids by binding to coenzyme A; fatty-acid--CoA ligase complement(4389120..4390904) Mycobacterium smegmatis str. MC2 155 4534894 YP_888579.1 CDS MSMEG_4302 NC_008596.1 4391109 4392635 D identified by match to protein family HMM PF01928; match to protein family HMM PF05235; adenylate cyclase 4391109..4392635 Mycobacterium smegmatis str. MC2 155 4535669 YP_888580.1 CDS MSMEG_4303 NC_008596.1 4393133 4394689 R identified by match to protein family HMM PF03848; match to protein family HMM PF05724; match to protein family HMM PF07992; methyltransferase complement(4393133..4394689) Mycobacterium smegmatis str. MC2 155 4531504 YP_888581.1 CDS MSMEG_4304 NC_008596.1 4394755 4395333 D identified by match to protein family HMM PF01381; match to protein family HMM PF07883; regulatory protein 4394755..4395333 Mycobacterium smegmatis str. MC2 155 4531756 YP_888582.1 CDS MSMEG_4305 NC_008596.1 4395335 4396432 R identified by match to protein family HMM PF00300; bifunctional RNase H/acid phosphatase complement(4395335..4396432) Mycobacterium smegmatis str. MC2 155 4534012 YP_888583.1 CDS MSMEG_4306 NC_008596.1 4396429 4397157 R identified by match to protein family HMM PF02591; hypothetical protein complement(4396429..4397157) Mycobacterium smegmatis str. MC2 155 4534558 YP_888584.1 CDS MSMEG_4307 NC_008596.1 4397147 4398298 R identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; hypothetical protein complement(4397147..4398298) Mycobacterium smegmatis str. MC2 155 4537233 YP_888585.1 CDS MSMEG_4308 NC_008596.1 4398573 4399265 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; 5'-nucleotidase 4398573..4399265 Mycobacterium smegmatis str. MC2 155 4537626 YP_888586.1 CDS MSMEG_4309 NC_008596.1 4399258 4399749 D identified by match to protein family HMM PF01451; low molecular weight protein-tyrosine-phosphatase 4399258..4399749 Mycobacterium smegmatis str. MC2 155 4537341 YP_888587.1 CDS MSMEG_4311 NC_008596.1 4399749 4400582 D hypothetical protein 4399749..4400582 Mycobacterium smegmatis str. MC2 155 4534180 YP_888588.1 CDS cobD NC_008596.1 4400536 4401492 R CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein complement(4400536..4401492) Mycobacterium smegmatis str. MC2 155 4536838 YP_888589.1 CDS MSMEG_4313 NC_008596.1 4401829 4402245 D identified by match to protein family HMM PF00903; glyoxalase/bleomycin resistance protein/dioxygenase 4401829..4402245 Mycobacterium smegmatis str. MC2 155 4534618 YP_888590.1 CDS MSMEG_4314 NC_008596.1 4402310 4402825 D hypothetical protein 4402310..4402825 Mycobacterium smegmatis str. MC2 155 4537305 YP_888591.1 CDS MSMEG_4315 NC_008596.1 4402920 4403411 D identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; igma-70 family RNA polymerase sigma factor 4402920..4403411 Mycobacterium smegmatis str. MC2 155 4534574 YP_888592.1 CDS MSMEG_4316 NC_008596.1 4403408 4403971 D identified by match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589; methylated-DNA--protein-cysteine methyltransferase 4403408..4403971 Mycobacterium smegmatis str. MC2 155 4535590 YP_888593.1 CDS MSMEG_4317 NC_008596.1 4403968 4404681 D hypothetical protein 4403968..4404681 Mycobacterium smegmatis str. MC2 155 4534087 YP_888594.1 CDS MSMEG_4318 NC_008596.1 4404837 4405655 D hypothetical protein 4404837..4405655 Mycobacterium smegmatis str. MC2 155 4534379 YP_888595.1 CDS MSMEG_4320 NC_008596.1 4405907 4406377 R identified by match to protein family HMM PF00578; alkyl hydroperoxide reductase complement(4405907..4406377) Mycobacterium smegmatis str. MC2 155 4531077 YP_888596.1 CDS MSMEG_4321 NC_008596.1 4406378 4406815 R hypothetical protein complement(4406378..4406815) Mycobacterium smegmatis str. MC2 155 4536832 YP_888597.1 CDS MSMEG_4322 NC_008596.1 4406957 4407487 R hypothetical protein complement(4406957..4407487) Mycobacterium smegmatis str. MC2 155 4536222 YP_888598.1 CDS aceE NC_008596.1 4407679 4410468 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 4407679..4410468 Mycobacterium smegmatis str. MC2 155 4531364 YP_888599.1 CDS MSMEG_4324 NC_008596.1 4410564 4411850 D hypothetical protein 4410564..4411850 Mycobacterium smegmatis str. MC2 155 4536639 YP_888600.1 CDS MSMEG_4325 NC_008596.1 4412068 4412940 D malonyl CoA-ACP transacylase 4412068..4412940 Mycobacterium smegmatis str. MC2 155 4536190 YP_888601.1 CDS acpP NC_008596.1 4413021 4413320 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 4413021..4413320 Mycobacterium smegmatis str. MC2 155 4537238 YP_888602.1 CDS MSMEG_4327 NC_008596.1 4413317 4414567 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 4413317..4414567 Mycobacterium smegmatis str. MC2 155 4534958 YP_888603.1 CDS MSMEG_4328 NC_008596.1 4414597 4415850 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 4414597..4415850 Mycobacterium smegmatis str. MC2 155 4535003 YP_888604.1 CDS MSMEG_4329 NC_008596.1 4415919 4417343 D identified by match to protein family HMM PF01039; propionyl-CoA carboxylase subunit beta 4415919..4417343 Mycobacterium smegmatis str. MC2 155 4537303 YP_888605.1 CDS MSMEG_4330 NC_008596.1 4417418 4418167 R identified by match to protein family HMM PF00106; short chain dehydrogenase complement(4417418..4418167) Mycobacterium smegmatis str. MC2 155 4531187 YP_888606.1 CDS MSMEG_4331 NC_008596.1 4418265 4419254 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 4418265..4419254 Mycobacterium smegmatis str. MC2 155 4532243 YP_888607.1 CDS MSMEG_4332 NC_008596.1 4419488 4421044 R identified by match to protein family HMM PF01266; glycerol-3-phosphate dehydrogenase complement(4419488..4421044) Mycobacterium smegmatis str. MC2 155 4536897 YP_888608.1 CDS MSMEG_4333 NC_008596.1 4421041 4421625 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(4421041..4421625) Mycobacterium smegmatis str. MC2 155 4535360 YP_888609.1 CDS MSMEG_4334 NC_008596.1 4421676 4423253 D identified by match to protein family HMM PF01565; match to protein family HMM PF02913; flavoprotein 4421676..4423253 Mycobacterium smegmatis str. MC2 155 4531334 YP_888610.1 CDS MSMEG_4335 NC_008596.1 4423250 4424152 D involved in the biosynthesis of phosphatidylinositol mannosides (PIMs); the enzyme from Mycobacterium tuberculosis can phosphorylate a variety of amphipathic lipids; diacylglycerol kinase 4423250..4424152 Mycobacterium smegmatis str. MC2 155 4530988 YP_888611.1 CDS MSMEG_4336 NC_008596.1 4424220 4424732 R hypothetical protein complement(4424220..4424732) Mycobacterium smegmatis str. MC2 155 4536486 YP_888612.1 CDS MSMEG_4337 NC_008596.1 4424856 4425665 R identified by match to protein family HMM PF00144; beta-lactamase complement(4424856..4425665) Mycobacterium smegmatis str. MC2 155 4533339 YP_888613.1 CDS MSMEG_4338 NC_008596.1 4425730 4426827 R transcriptional regulatory protein complement(4425730..4426827) Mycobacterium smegmatis str. MC2 155 4532074 YP_888614.1 CDS MSMEG_4339 NC_008596.1 4426949 4428589 R identified by match to protein family HMM PF00196; match to protein family HMM PF07719; hypothetical protein complement(4426949..4428589) Mycobacterium smegmatis str. MC2 155 4534447 YP_888615.1 CDS MSMEG_4340 NC_008596.1 4428679 4429770 D identified by match to protein family HMM PF00107; NAD/mycothiol-dependent formaldehyde dehydrogenase 4428679..4429770 Mycobacterium smegmatis str. MC2 155 4534731 YP_888616.1 CDS MSMEG_4342 NC_008596.1 4429796 4430428 D identified by match to protein family HMM PF00753; metallo-beta-lactamase 4429796..4430428 Mycobacterium smegmatis str. MC2 155 4535622 YP_888617.1 CDS MSMEG_4341 NC_008596.1 4430412 4430561 R hypothetical protein complement(4430412..4430561) Mycobacterium smegmatis str. MC2 155 4537012 YP_888618.1 CDS MSMEG_4344 NC_008596.1 4430791 4432173 D monooxygenase 4430791..4432173 Mycobacterium smegmatis str. MC2 155 4531592 YP_888619.1 CDS MSMEG_4343 NC_008596.1 4432170 4432934 R hypothetical protein complement(4432170..4432934) Mycobacterium smegmatis str. MC2 155 4534636 YP_888620.1 CDS MSMEG_4345 NC_008596.1 4432931 4433287 R hypothetical protein complement(4432931..4433287) Mycobacterium smegmatis str. MC2 155 4532132 YP_888621.1 CDS MSMEG_4346 NC_008596.1 4433006 4433236 D hypothetical protein 4433006..4433236 Mycobacterium smegmatis str. MC2 155 4535700 YP_888622.1 CDS MSMEG_4347 NC_008596.1 4433239 4434321 D hypothetical protein 4433239..4434321 Mycobacterium smegmatis str. MC2 155 4536742 YP_888623.1 CDS MSMEG_4348 NC_008596.1 4434329 4435885 R thiamine-pyrophosphate requiring enzyme; hypothetical protein complement(4434329..4435885) Mycobacterium smegmatis str. MC2 155 4534283 YP_888624.1 CDS MSMEG_4349 NC_008596.1 4435960 4437738 R hypothetical protein complement(4435960..4437738) Mycobacterium smegmatis str. MC2 155 4531747 YP_888625.1 CDS dapB NC_008596.1 4437803 4438963 R identified by match to protein family HMM PF01113; dihydrodipicolinate reductase complement(4437803..4438963) Mycobacterium smegmatis str. MC2 155 4535249 YP_888626.1 CDS MSMEG_4351 NC_008596.1 4438978 4439736 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; oxidoreductase YjgI 4438978..4439736 Mycobacterium smegmatis str. MC2 155 4537520 YP_888627.1 CDS MSMEG_4352 NC_008596.1 4439737 4440798 R hypothetical protein complement(4439737..4440798) Mycobacterium smegmatis str. MC2 155 4536913 YP_888628.1 CDS MSMEG_4353 NC_008596.1 4440809 4441354 R hypothetical protein complement(4440809..4441354) Mycobacterium smegmatis str. MC2 155 4535777 YP_888629.1 CDS MSMEG_4354 NC_008596.1 4441468 4442991 D identified by match to protein family HMM PF00496; dipeptide-binding protein of ABC transporter 4441468..4442991 Mycobacterium smegmatis str. MC2 155 4534755 YP_888630.1 CDS MSMEG_4355 NC_008596.1 4442988 4443965 D identified by match to protein family HMM PF00528; peptide ABC transporter permease 4442988..4443965 Mycobacterium smegmatis str. MC2 155 4532989 YP_888631.1 CDS MSMEG_4356 NC_008596.1 4443962 4444840 D identified by match to protein family HMM PF00528; ABC transporter 4443962..4444840 Mycobacterium smegmatis str. MC2 155 4535987 YP_888632.1 CDS MSMEG_4357 NC_008596.1 4444837 4446417 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 4444837..4446417 Mycobacterium smegmatis str. MC2 155 4533560 YP_888633.1 CDS MSMEG_4358 NC_008596.1 4446420 4447160 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; D-beta-hydroxybutyrate dehydrogenase 4446420..4447160 Mycobacterium smegmatis str. MC2 155 4531204 YP_888634.1 CDS MSMEG_4359 NC_008596.1 4447171 4447407 R hypothetical protein complement(4447171..4447407) Mycobacterium smegmatis str. MC2 155 4534946 YP_888635.1 CDS MSMEG_4361 NC_008596.1 4447270 4447512 D hypothetical protein 4447270..4447512 Mycobacterium smegmatis str. MC2 155 4533463 YP_888636.1 CDS MSMEG_4360 NC_008596.1 4447509 4448855 R hypothetical protein complement(4447509..4448855) Mycobacterium smegmatis str. MC2 155 4535058 YP_888637.1 CDS MSMEG_4362 NC_008596.1 4449005 4449823 R identified by match to protein family HMM PF00582; universal stress protein family protein complement(4449005..4449823) Mycobacterium smegmatis str. MC2 155 4536440 YP_888638.1 CDS MSMEG_4363 NC_008596.1 4450008 4450634 R identified by match to protein family HMM PF07366; hypothetical protein complement(4450008..4450634) Mycobacterium smegmatis str. MC2 155 4534844 YP_888639.1 CDS MSMEG_4364 NC_008596.1 4450749 4450883 R hypothetical protein complement(4450749..4450883) Mycobacterium smegmatis str. MC2 155 4533752 YP_888640.1 CDS MSMEG_4365 NC_008596.1 4450873 4453014 D hypothetical protein 4450873..4453014 Mycobacterium smegmatis str. MC2 155 4536760 YP_888641.1 CDS MSMEG_4366 NC_008596.1 4453016 4454593 R identified by match to protein family HMM PF00069; serine/threonine protein kinase complement(4453016..4454593) Mycobacterium smegmatis str. MC2 155 4533328 YP_888642.1 CDS MSMEG_4367 NC_008596.1 4454720 4455976 R identified by match to protein family HMM PF03069; formamidase complement(4454720..4455976) Mycobacterium smegmatis str. MC2 155 4532884 YP_888643.1 CDS MSMEG_4369 NC_008596.1 4455986 4456396 D hypothetical protein 4455986..4456396 Mycobacterium smegmatis str. MC2 155 4537337 YP_888644.1 CDS MSMEG_4368 NC_008596.1 4455998 4456285 R identified by match to protein family HMM TIGR02605; regulatory protein, FmdB family protein complement(4455998..4456285) Mycobacterium smegmatis str. MC2 155 4535666 YP_888645.1 CDS MSMEG_4370 NC_008596.1 4456431 4457708 R identified by match to protein family HMM PF07905; regulatory protein complement(4456431..4457708) Mycobacterium smegmatis str. MC2 155 4532532 YP_888646.1 CDS MSMEG_4371 NC_008596.1 4457769 4458716 R identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; vanillate O-demethylase complement(4457769..4458716) Mycobacterium smegmatis str. MC2 155 4533655 YP_888647.1 CDS MSMEG_4372 NC_008596.1 4458713 4459807 R identified by match to protein family HMM PF00355; capreomycidine hydroxylase complement(4458713..4459807) Mycobacterium smegmatis str. MC2 155 4536478 YP_888648.1 CDS MSMEG_4373 NC_008596.1 4459820 4460713 R identified by match to protein family HMM PF01522; polysaccharide deacetylase complement(4459820..4460713) Mycobacterium smegmatis str. MC2 155 4533879 YP_888649.1 CDS speB NC_008596.1 4460713 4461672 R identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; agmatinase complement(4460713..4461672) Mycobacterium smegmatis str. MC2 155 4535424 YP_888650.1 CDS MSMEG_4375 NC_008596.1 4461684 4462337 R identified by match to protein family HMM PF00106; 3-oxoacyl-ACP reductase complement(4461684..4462337) Mycobacterium smegmatis str. MC2 155 4532325 YP_888651.1 CDS MSMEG_4376 NC_008596.1 4462339 4463046 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; 3-oxoacyl-ACP reductase complement(4462339..4463046) Mycobacterium smegmatis str. MC2 155 4537479 YP_888652.1 CDS MSMEG_4377 NC_008596.1 4463043 4464521 R identified by match to protein family HMM PF00324; amino acid permease complement(4463043..4464521) Mycobacterium smegmatis str. MC2 155 4532616 YP_888653.1 CDS MSMEG_4378 NC_008596.1 4464829 4465473 D identified by match to protein family HMM PF00072; match to protein family HMM PF00196; two-component system response regulator 4464829..4465473 Mycobacterium smegmatis str. MC2 155 4533470 YP_888654.1 CDS MSMEG_4379 NC_008596.1 4465578 4466222 D identified by match to protein family HMM PF00857; isochorismatase hydrolase 4465578..4466222 Mycobacterium smegmatis str. MC2 155 4534782 YP_888655.1 CDS MSMEG_4380 NC_008596.1 4466375 4468300 D identified by match to protein family HMM PF00005; match to protein family HMM PF06472; ABC transporter permease 4466375..4468300 Mycobacterium smegmatis str. MC2 155 4534983 YP_888656.1 CDS MSMEG_4381 NC_008596.1 4468358 4469371 D identified by match to protein family HMM PF03069; amidase 4468358..4469371 Mycobacterium smegmatis str. MC2 155 4534036 YP_888657.1 CDS MSMEG_4382 NC_008596.1 4469384 4470145 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; dehydrogenase/reductase SDR family protein member 10 4469384..4470145 Mycobacterium smegmatis str. MC2 155 4534065 YP_888658.1 CDS MSMEG_4383 NC_008596.1 4470276 4473152 D identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833; MmpL5 protein 4470276..4473152 Mycobacterium smegmatis str. MC2 155 4537724 YP_888659.1 CDS MSMEG_4384 NC_008596.1 4473309 4475720 D identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF03793; penicillin binding protein transpeptidase domain-containing protein 4473309..4475720 Mycobacterium smegmatis str. MC2 155 4531125 YP_888660.1 CDS MSMEG_4385 NC_008596.1 4475954 4477612 D identified by match to protein family HMM PF00496; peptide ABC transporter 4475954..4477612 Mycobacterium smegmatis str. MC2 155 4531874 YP_888661.1 CDS MSMEG_4386 NC_008596.1 4477609 4478577 D identified by match to protein family HMM PF00528; ABC transporter permease 4477609..4478577 Mycobacterium smegmatis str. MC2 155 4535386 YP_888662.1 CDS MSMEG_4387 NC_008596.1 4478574 4479428 D identified by match to protein family HMM PF00528; ABC transporter permease 4478574..4479428 Mycobacterium smegmatis str. MC2 155 4536857 YP_888663.1 CDS MSMEG_4388 NC_008596.1 4479425 4481053 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 4479425..4481053 Mycobacterium smegmatis str. MC2 155 4535491 YP_888664.1 CDS MSMEG_4389 NC_008596.1 4481050 4482420 D monooxygenase, NtaA/SnaA/SoxA family protein 4481050..4482420 Mycobacterium smegmatis str. MC2 155 4531284 YP_888665.1 CDS MSMEG_4391 NC_008596.1 4482417 4483634 D identified by match to protein family HMM PF08028; acyl-CoA dehydrogenase 4482417..4483634 Mycobacterium smegmatis str. MC2 155 4532046 YP_888666.1 CDS MSMEG_4390 NC_008596.1 4483625 4484047 R hypothetical protein complement(4483625..4484047) Mycobacterium smegmatis str. MC2 155 4535026 YP_888667.1 CDS MSMEG_4392 NC_008596.1 4483869 4485146 D identified by match to protein family HMM PF01979; organophopsphate acid anhydrase 4483869..4485146 Mycobacterium smegmatis str. MC2 155 4534085 YP_888668.1 CDS MSMEG_4393 NC_008596.1 4485158 4486039 D carboxyvinyl-carboxyphosphonate phosphorylmutase 4485158..4486039 Mycobacterium smegmatis str. MC2 155 4536172 YP_888669.1 CDS MSMEG_4394 NC_008596.1 4486041 4486934 R identified by match to protein family HMM PF00126; LysR family transcriptional regulator complement(4486041..4486934) Mycobacterium smegmatis str. MC2 155 4531934 YP_888670.1 CDS MSMEG_4395 NC_008596.1 4487077 4487268 D identified by match to protein family HMM PF05901; excalibur domain-containing protein 4487077..4487268 Mycobacterium smegmatis str. MC2 155 4535571 YP_888671.1 CDS MSMEG_4396 NC_008596.1 4487275 4488018 R identified by match to protein family HMM PF00857; isochorismatase hydrolase complement(4487275..4488018) Mycobacterium smegmatis str. MC2 155 4533559 YP_888672.1 CDS MSMEG_4397 NC_008596.1 4488131 4488526 R identified by match to protein family HMM PF00376; MerR family transcriptional regulator complement(4488131..4488526) Mycobacterium smegmatis str. MC2 155 4536601 YP_888673.1 CDS MSMEG_4398 NC_008596.1 4488622 4489575 D identified by match to protein family HMM PF00296; hypothetical protein 4488622..4489575 Mycobacterium smegmatis str. MC2 155 4536966 YP_888674.1 CDS MSMEG_4399 NC_008596.1 4489599 4489976 D hypothetical protein 4489599..4489976 Mycobacterium smegmatis str. MC2 155 4532385 YP_888675.1 CDS MSMEG_4400 NC_008596.1 4489984 4491054 R identified by match to protein family HMM PF00107; alcohol dehydrogenase complement(4489984..4491054) Mycobacterium smegmatis str. MC2 155 4532762 YP_888676.1 CDS MSMEG_4401 NC_008596.1 4491063 4491788 R identified by match to protein family HMM PF00702; phosphonoacetaldehyde hydrolase complement(4491063..4491788) Mycobacterium smegmatis str. MC2 155 4533122 YP_888677.1 CDS MSMEG_4402 NC_008596.1 4492467 4493168 D identified by similarity to GP:150004; match to protein family HMM PF07929; IS1096, tnpR protein 4492467..4493168 Mycobacterium smegmatis str. MC2 155 4535589 YP_888678.1 CDS MSMEG_4403 NC_008596.1 4493176 4494498 R identified by similarity to GP:150005; match to protein family HMM PF01610; IS1096, tnpA protein complement(4493176..4494498) Mycobacterium smegmatis str. MC2 155 4532118 YP_888679.1 CDS MSMEG_4404 NC_008596.1 4494217 4494771 D hypothetical protein 4494217..4494771 Mycobacterium smegmatis str. MC2 155 4535168 YP_888680.1 CDS MSMEG_4405 NC_008596.1 4495047 4495622 R identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; ECF sigma factor RpoE1 complement(4495047..4495622) Mycobacterium smegmatis str. MC2 155 4531856 YP_888681.1 CDS MSMEG_4406 NC_008596.1 4495727 4496029 R UsfY protein complement(4495727..4496029) Mycobacterium smegmatis str. MC2 155 4531712 YP_888682.1 CDS MSMEG_4407 NC_008596.1 4496063 4496482 R hypothetical protein complement(4496063..4496482) Mycobacterium smegmatis str. MC2 155 4532025 YP_888683.1 CDS MSMEG_4408 NC_008596.1 4496500 4497018 R identified by match to protein family HMM PF04224; integral membrane protein complement(4496500..4497018) Mycobacterium smegmatis str. MC2 155 4535877 YP_888684.1 CDS MSMEG_4409 NC_008596.1 4497153 4497278 D hypothetical protein 4497153..4497278 Mycobacterium smegmatis str. MC2 155 4530924 YP_888685.1 CDS MSMEG_4410 NC_008596.1 4497433 4497702 R hypothetical protein complement(4497433..4497702) Mycobacterium smegmatis str. MC2 155 4535373 YP_888686.1 CDS MSMEG_4411 NC_008596.1 4497720 4498460 R identified by match to protein family HMM PF00175; match to protein family HMM PF00970; oxidoreductase FAD-binding region complement(4497720..4498460) Mycobacterium smegmatis str. MC2 155 4534993 YP_888687.1 CDS MSMEG_4412 NC_008596.1 4498464 4499063 R identified by match to protein family HMM PF00174; oxidoreductase, molybdopterin binding complement(4498464..4499063) Mycobacterium smegmatis str. MC2 155 4531904 YP_888688.1 CDS MSMEG_4413 NC_008596.1 4499073 4499372 R hypothetical protein complement(4499073..4499372) Mycobacterium smegmatis str. MC2 155 4531770 YP_888689.1 CDS MSMEG_4414 NC_008596.1 4499356 4499895 R hypothetical protein complement(4499356..4499895) Mycobacterium smegmatis str. MC2 155 4534443 YP_888690.1 CDS tal NC_008596.1 4499892 4501004 R catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; transaldolase complement(4499892..4501004) Mycobacterium smegmatis str. MC2 155 4535797 YP_888691.1 CDS MSMEG_4416 NC_008596.1 4501001 4501126 R hypothetical protein complement(4501001..4501126) Mycobacterium smegmatis str. MC2 155 4531607 YP_888692.1 CDS msrA NC_008596.1 4501152 4501721 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(4501152..4501721) Mycobacterium smegmatis str. MC2 155 4536110 YP_888693.1 CDS msrB NC_008596.1 4501718 4502212 R identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357; methionine-R-sulfoxide reductase complement(4501718..4502212) Mycobacterium smegmatis str. MC2 155 4534063 YP_888694.1 CDS MSMEG_4419 NC_008596.1 4502235 4503035 R identified by match to protein family HMM PF00106; glucose-1-dehydrogenase complement(4502235..4503035) Mycobacterium smegmatis str. MC2 155 4531164 YP_888695.1 CDS MSMEG_4420 NC_008596.1 4503248 4503682 D identified by match to protein family HMM PF07883; cupin 4503248..4503682 Mycobacterium smegmatis str. MC2 155 4537263 YP_888696.1 CDS MSMEG_4421 NC_008596.1 4503695 4504246 D hypothetical protein 4503695..4504246 Mycobacterium smegmatis str. MC2 155 4534319 YP_888697.1 CDS MSMEG_4422 NC_008596.1 4504237 4505727 D identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF07992; oxidoreductase 4504237..4505727 Mycobacterium smegmatis str. MC2 155 4536508 YP_888698.1 CDS MSMEG_4423 NC_008596.1 4505724 4506692 D oxidoreductase 4505724..4506692 Mycobacterium smegmatis str. MC2 155 4533897 YP_888699.1 CDS MSMEG_4424 NC_008596.1 4506742 4507137 D identified by match to protein family HMM PF01042; endoribonuclease L-PSP 4506742..4507137 Mycobacterium smegmatis str. MC2 155 4532438 YP_888700.1 CDS MSMEG_4425 NC_008596.1 4507134 4507535 D oxidoreductase 4507134..4507535 Mycobacterium smegmatis str. MC2 155 4532893 YP_888701.1 CDS MSMEG_4427 NC_008596.1 4507529 4508977 D identified by match to protein family HMM PF07690; transmembrane efflux pump 4507529..4508977 Mycobacterium smegmatis str. MC2 155 4534110 YP_888702.1 CDS MSMEG_4426 NC_008596.1 4508963 4509754 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; hypothetical protein complement(4508963..4509754) Mycobacterium smegmatis str. MC2 155 4532185 YP_888703.1 CDS MSMEG_4428 NC_008596.1 4509784 4510221 R hypothetical protein complement(4509784..4510221) Mycobacterium smegmatis str. MC2 155 4533842 YP_888704.1 CDS MSMEG_4429 NC_008596.1 4510350 4510757 R hypothetical protein complement(4510350..4510757) Mycobacterium smegmatis str. MC2 155 4536052 YP_888705.1 CDS MSMEG_4430 NC_008596.1 4510896 4513175 R identified by match to protein family HMM PF00196; match to protein family HMM PF07719; match to protein family HMM PF07721; transcriptional regulator complement(4510896..4513175) Mycobacterium smegmatis str. MC2 155 4534317 YP_888706.1 CDS MSMEG_4431 NC_008596.1 4513754 4516585 R identified by match to protein family HMM PF00196; regulatory protein complement(4513754..4516585) Mycobacterium smegmatis str. MC2 155 4532179 YP_888707.1 CDS MSMEG_4432 NC_008596.1 4516598 4516756 R hypothetical protein complement(4516598..4516756) Mycobacterium smegmatis str. MC2 155 4532806 YP_888708.1 CDS MSMEG_4433 NC_008596.1 4516806 4518224 D identified by match to protein family HMM PF00070; match to protein family HMM PF07992; dehydrogenase 4516806..4518224 Mycobacterium smegmatis str. MC2 155 4533306 YP_888709.1 CDS MSMEG_4434 NC_008596.1 4518221 4519033 D identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; Cof protein 4518221..4519033 Mycobacterium smegmatis str. MC2 155 4536680 YP_888710.1 CDS MSMEG_4435 NC_008596.1 4519067 4519702 R dimethylmenaquinone methyltransferase complement(4519067..4519702) Mycobacterium smegmatis str. MC2 155 4537387 YP_888711.1 CDS MSMEG_4436 NC_008596.1 4519702 4521636 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(4519702..4521636) Mycobacterium smegmatis str. MC2 155 4536243 YP_888712.1 CDS ctaD NC_008596.1 4521629 4523380 R identified by match to protein family HMM PF00115; match to protein family HMM TIGR02891; cytochrome C oxidase subunit I complement(4521629..4523380) Mycobacterium smegmatis str. MC2 155 4534363 YP_888713.1 CDS MSMEG_4438 NC_008596.1 4523377 4523499 R hypothetical protein complement(4523377..4523499) Mycobacterium smegmatis str. MC2 155 4532062 YP_888714.1 CDS MSMEG_4439 NC_008596.1 4523543 4524148 R identified by match to protein family HMM PF00583; acetyltransferase complement(4523543..4524148) Mycobacterium smegmatis str. MC2 155 4533028 YP_888715.1 CDS MSMEG_4440 NC_008596.1 4524154 4524924 R identified by match to protein family HMM PF00106; glucose-1-dehydrogenase complement(4524154..4524924) Mycobacterium smegmatis str. MC2 155 4533577 YP_888716.1 CDS MSMEG_4441 NC_008596.1 4524954 4525862 R identified by match to protein family HMM PF07883; cupin complement(4524954..4525862) Mycobacterium smegmatis str. MC2 155 4531447 YP_888717.1 CDS MSMEG_4444 NC_008596.1 4525862 4526827 D hypothetical protein 4525862..4526827 Mycobacterium smegmatis str. MC2 155 4537533 YP_888718.1 CDS MSMEG_4442 NC_008596.1 4525892 4526812 R identified by match to protein family HMM PF00107; zinc-binding oxidoreductase complement(4525892..4526812) Mycobacterium smegmatis str. MC2 155 4533660 YP_888719.1 CDS MSMEG_4443 NC_008596.1 4526809 4527093 R hypothetical protein complement(4526809..4527093) Mycobacterium smegmatis str. MC2 155 4531200 YP_888720.1 CDS MSMEG_4445 NC_008596.1 4527220 4527378 R hypothetical protein complement(4527220..4527378) Mycobacterium smegmatis str. MC2 155 4537364 YP_888721.1 CDS MSMEG_4447 NC_008596.1 4528883 4529092 D hypothetical protein 4528883..4529092 Mycobacterium smegmatis str. MC2 155 4535300 YP_888722.1 CDS MSMEG_4448 NC_008596.1 4529095 4529424 D identified by match to protein family HMM PF02452; transcriptional modulator of MazE 4529095..4529424 Mycobacterium smegmatis str. MC2 155 4533359 YP_888723.1 CDS MSMEG_4449 NC_008596.1 4529467 4530054 R identified by match to protein family HMM PF00440; transcriptional regulator complement(4529467..4530054) Mycobacterium smegmatis str. MC2 155 4536945 YP_888724.1 CDS MSMEG_4450 NC_008596.1 4530136 4531071 D alpha/beta hydrolase 4530136..4531071 Mycobacterium smegmatis str. MC2 155 4533311 YP_888725.1 CDS MSMEG_4451 NC_008596.1 4531068 4532780 D monooxygenase 4531068..4532780 Mycobacterium smegmatis str. MC2 155 4536586 YP_888726.1 CDS MSMEG_4453 NC_008596.1 4533018 4533377 D hypothetical protein 4533018..4533377 Mycobacterium smegmatis str. MC2 155 4537256 YP_888727.1 CDS ltaE NC_008596.1 4533404 4534420 D identified by similarity to SP:O50584; match to protein family HMM PF00282; match to protein family HMM PF01212; L-threonine aldolase 4533404..4534420 Mycobacterium smegmatis str. MC2 155 4536092 YP_888728.1 CDS MSMEG_4455 NC_008596.1 4534603 4535847 D identified by match to protein family HMM PF00144; beta-lactamase 4534603..4535847 Mycobacterium smegmatis str. MC2 155 4535167 YP_888729.1 CDS MSMEG_4456 NC_008596.1 4535851 4536666 R hypothetical protein complement(4535851..4536666) Mycobacterium smegmatis str. MC2 155 4531982 YP_888730.1 CDS MSMEG_4457 NC_008596.1 4536707 4537615 R identified by match to protein family HMM PF01037; AsnC family transcriptional regulator complement(4536707..4537615) Mycobacterium smegmatis str. MC2 155 4531343 YP_888731.1 CDS MSMEG_4458 NC_008596.1 4537835 4539388 D identified by match to protein family HMM PF02133; transmembrane transporter 4537835..4539388 Mycobacterium smegmatis str. MC2 155 4531645 YP_888732.1 CDS speB NC_008596.1 4539385 4540344 D identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; agmatinase 4539385..4540344 Mycobacterium smegmatis str. MC2 155 4537057 YP_888733.1 CDS MSMEG_4460 NC_008596.1 4540344 4541966 D identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; acetolactate synthase 4540344..4541966 Mycobacterium smegmatis str. MC2 155 4533728 YP_888734.1 CDS MSMEG_4462 NC_008596.1 4541971 4543458 D identified by match to protein family HMM PF00474; sodium:solute symporter 4541971..4543458 Mycobacterium smegmatis str. MC2 155 4534754 YP_888735.1 CDS MSMEG_4461 NC_008596.1 4543424 4544110 R identified by match to protein family HMM TIGR02206; hypothetical protein complement(4543424..4544110) Mycobacterium smegmatis str. MC2 155 4537264 YP_888736.1 CDS MSMEG_4463 NC_008596.1 4544142 4545503 R CalR5 protein complement(4544142..4545503) Mycobacterium smegmatis str. MC2 155 4536264 YP_888737.1 CDS MSMEG_4464 NC_008596.1 4545500 4547017 R identified by match to protein family HMM PF01523; modulator of DNA gyrase complement(4545500..4547017) Mycobacterium smegmatis str. MC2 155 4535744 YP_888738.1 CDS MSMEG_4465 NC_008596.1 4547090 4547860 R identified by match to protein family HMM PF01083; match to protein family HMM PF02230; cutinase complement(4547090..4547860) Mycobacterium smegmatis str. MC2 155 4531322 YP_888739.1 CDS MSMEG_4466 NC_008596.1 4548039 4548956 D identified by match to protein family HMM PF00528; ABC transporter permease 4548039..4548956 Mycobacterium smegmatis str. MC2 155 4536752 YP_888740.1 CDS MSMEG_4467 NC_008596.1 4548976 4549770 D identified by match to protein family HMM PF00528; ABC transporter permease 4548976..4549770 Mycobacterium smegmatis str. MC2 155 4536359 YP_888741.1 CDS MSMEG_4468 NC_008596.1 4549859 4551151 D identified by match to protein family HMM PF01547; extracellular solute-binding protein UspC 4549859..4551151 Mycobacterium smegmatis str. MC2 155 4535547 YP_888742.1 CDS MSMEG_4469 NC_008596.1 4551156 4552001 R identified by match to protein family HMM PF02361; cobalt transporter complement(4551156..4552001) Mycobacterium smegmatis str. MC2 155 4532772 YP_888743.1 CDS MSMEG_4470 NC_008596.1 4551998 4554037 R identified by match to protein family HMM PF00005; ABC transporter complement(4551998..4554037) Mycobacterium smegmatis str. MC2 155 4537246 YP_888744.1 CDS MSMEG_4471 NC_008596.1 4554168 4554617 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 4554168..4554617 Mycobacterium smegmatis str. MC2 155 4531714 YP_888745.1 CDS MSMEG_4472 NC_008596.1 4554636 4555844 D identified by match to protein family HMM PF07690; multidrug-efflux transporter protein 4554636..4555844 Mycobacterium smegmatis str. MC2 155 4534572 YP_888746.1 CDS MSMEG_4473 NC_008596.1 4555859 4556590 R identified by match to protein family HMM PF01988; integral membrane protein complement(4555859..4556590) Mycobacterium smegmatis str. MC2 155 4536711 YP_888747.1 CDS MSMEG_4474 NC_008596.1 4556672 4558594 D identified by match to protein family HMM PF00441; match to protein family HMM PF01756; match to protein family HMM PF02770; acyl-CoA oxidase 4556672..4558594 Mycobacterium smegmatis str. MC2 155 4532017 YP_888748.1 CDS MSMEG_4475 NC_008596.1 4558601 4559080 R LppP protein complement(4558601..4559080) Mycobacterium smegmatis str. MC2 155 4536248 YP_888749.1 CDS MSMEG_4476 NC_008596.1 4559240 4559560 D hypothetical protein 4559240..4559560 Mycobacterium smegmatis str. MC2 155 4537042 YP_888750.1 CDS MSMEG_4477 NC_008596.1 4559577 4561130 R identified by match to protein family HMM PF00561; hydrolase, alpha/beta hydrolase fold family protein complement(4559577..4561130) Mycobacterium smegmatis str. MC2 155 4533152 YP_888751.1 CDS MSMEG_4479 NC_008596.1 4561426 4561695 D hypothetical protein 4561426..4561695 Mycobacterium smegmatis str. MC2 155 4536061 YP_888752.1 CDS MSMEG_4480 NC_008596.1 4561717 4561908 R hypothetical protein complement(4561717..4561908) Mycobacterium smegmatis str. MC2 155 4531488 YP_888753.1 CDS MSMEG_4481 NC_008596.1 4561918 4562061 D hypothetical protein 4561918..4562061 Mycobacterium smegmatis str. MC2 155 4531267 YP_888754.1 CDS dnaG NC_008596.1 4562121 4564031 R synthesizes RNA primers at the replication forks; DNA primase complement(4562121..4564031) Mycobacterium smegmatis str. MC2 155 4535737 YP_888755.1 CDS MSMEG_4483 NC_008596.1 4564085 4565371 R dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(4564085..4565371) Mycobacterium smegmatis str. MC2 155 4535956 YP_888756.1 CDS MSMEG_4484 NC_008596.1 4565431 4567473 D identified by match to protein family HMM PF04536; transmembrane protein 4565431..4567473 Mycobacterium smegmatis str. MC2 155 4536262 YP_888757.1 CDS glyS NC_008596.1 4567679 4569064 R Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase complement(4567679..4569064) Mycobacterium smegmatis str. MC2 155 4535041 YP_888758.1 CDS MSMEG_4486 NC_008596.1 4569200 4569544 D identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 4569200..4569544 Mycobacterium smegmatis str. MC2 155 4534548 YP_888759.1 CDS MSMEG_4487 NC_008596.1 4569541 4569951 D identified by match to protein family HMM PF01475; ferric uptake regulation protein 4569541..4569951 Mycobacterium smegmatis str. MC2 155 4533926 YP_888760.1 CDS MSMEG_4488 NC_008596.1 4569965 4570369 R identified by match to protein family HMM PF00293; hydrolase, nudix family protein complement(4569965..4570369) Mycobacterium smegmatis str. MC2 155 4534381 YP_888761.1 CDS MSMEG_4489 NC_008596.1 4570366 4570830 R hypothetical protein complement(4570366..4570830) Mycobacterium smegmatis str. MC2 155 4531230 YP_888762.1 CDS uppS NC_008596.1 4570835 4571716 R catalyzes the formation of UDP pyrophosphate from isopentenyl pyrophosphate; UDP pyrophosphate synthase complement(4570835..4571716) Mycobacterium smegmatis str. MC2 155 4535408 YP_888763.1 CDS recO NC_008596.1 4571664 4572506 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(4571664..4572506) Mycobacterium smegmatis str. MC2 155 4532871 YP_888764.1 CDS MSMEG_4492 NC_008596.1 4572567 4574156 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 4572567..4574156 Mycobacterium smegmatis str. MC2 155 4535578 YP_888765.1 CDS era NC_008596.1 4574188 4575093 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(4574188..4575093) Mycobacterium smegmatis str. MC2 155 4531439 YP_888766.1 CDS MSMEG_4494 NC_008596.1 4575100 4575417 R hypothetical protein complement(4575100..4575417) Mycobacterium smegmatis str. MC2 155 4535112 YP_888767.1 CDS MSMEG_4495 NC_008596.1 4575410 4576780 R identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; hypothetical protein complement(4575410..4576780) Mycobacterium smegmatis str. MC2 155 4533771 YP_888768.1 CDS MSMEG_4496 NC_008596.1 4576777 4577313 R identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; metalloprotease complement(4576777..4577313) Mycobacterium smegmatis str. MC2 155 4535510 YP_888769.1 CDS MSMEG_4497 NC_008596.1 4577310 4578356 R identified by match to protein family HMM PF00013; match to protein family HMM PF02562; PhoH family protein complement(4577310..4578356) Mycobacterium smegmatis str. MC2 155 4533692 YP_888770.1 CDS MSMEG_4498 NC_008596.1 4578360 4578452 D hypothetical protein 4578360..4578452 Mycobacterium smegmatis str. MC2 155 4532621 YP_888771.1 CDS MSMEG_4500 NC_008596.1 4578490 4578738 D hypothetical protein 4578490..4578738 Mycobacterium smegmatis str. MC2 155 4535559 YP_888772.1 CDS MSMEG_4499 NC_008596.1 4578517 4578684 R hypothetical protein complement(4578517..4578684) Mycobacterium smegmatis str. MC2 155 4535012 YP_888773.1 CDS MSMEG_4501 NC_008596.1 4578798 4580165 R identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter complement(4578798..4580165) Mycobacterium smegmatis str. MC2 155 4535753 YP_888774.1 CDS MSMEG_4503 NC_008596.1 4580149 4580292 D hypothetical protein 4580149..4580292 Mycobacterium smegmatis str. MC2 155 4533849 YP_888775.1 CDS MSMEG_4502 NC_008596.1 4580289 4581029 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(4580289..4581029) Mycobacterium smegmatis str. MC2 155 4537679 YP_888776.1 CDS dnaJ NC_008596.1 4581049 4582194 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ complement(4581049..4582194) Mycobacterium smegmatis str. MC2 155 4531489 YP_888777.1 CDS hrcA NC_008596.1 4582259 4583290 R negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor complement(4582259..4583290) Mycobacterium smegmatis str. MC2 155 4531615 YP_888778.1 CDS MSMEG_4506 NC_008596.1 4583328 4583459 R hypothetical protein complement(4583328..4583459) Mycobacterium smegmatis str. MC2 155 4531248 YP_888779.1 CDS MSMEG_4507 NC_008596.1 4583484 4583798 D hypothetical protein 4583484..4583798 Mycobacterium smegmatis str. MC2 155 4537220 YP_888780.1 CDS MSMEG_4508 NC_008596.1 4583805 4584014 R identified by match to protein family HMM PF03621; hypothetical protein complement(4583805..4584014) Mycobacterium smegmatis str. MC2 155 4533283 YP_888781.1 CDS MSMEG_4509 NC_008596.1 4583992 4585299 R MbtG protein complement(4583992..4585299) Mycobacterium smegmatis str. MC2 155 4534571 YP_888782.1 CDS MSMEG_4510 NC_008596.1 4585320 4589759 R identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733; peptide synthetase mbtf complement(4585320..4589759) Mycobacterium smegmatis str. MC2 155 4532531 YP_888783.1 CDS MSMEG_4511 NC_008596.1 4589756 4595215 R identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733; linear gramicidin synthetase subunit B complement(4589756..4595215) Mycobacterium smegmatis str. MC2 155 4532105 YP_888784.1 CDS MSMEG_4512 NC_008596.1 4595208 4598201 R identified by match to protein family HMM PF00106; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; polyketide synthase complement(4595208..4598201) Mycobacterium smegmatis str. MC2 155 4535546 YP_888785.1 CDS MSMEG_4513 NC_008596.1 4598198 4599499 R identified by match to protein family HMM PF00109; match to protein family HMM PF02801; polyketide synthase complement(4598198..4599499) Mycobacterium smegmatis str. MC2 155 4535359 YP_888786.1 CDS MSMEG_4514 NC_008596.1 4599486 4600232 R identified by match to protein family HMM PF00975; thioesterase complement(4599486..4600232) Mycobacterium smegmatis str. MC2 155 4537571 YP_888787.1 CDS MSMEG_4515 NC_008596.1 4600229 4603738 R identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733; non-ribosomal peptide synthetase complement(4600229..4603738) Mycobacterium smegmatis str. MC2 155 4532835 YP_888788.1 CDS MSMEG_4516 NC_008596.1 4603836 4605512 D identified by match to protein family HMM PF00501; 2,3-dihydroxybenzoate-AMP ligase 4603836..4605512 Mycobacterium smegmatis str. MC2 155 4536892 YP_888789.1 CDS MSMEG_4517 NC_008596.1 4605520 4606146 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(4605520..4606146) Mycobacterium smegmatis str. MC2 155 4532366 YP_888790.1 CDS MSMEG_4518 NC_008596.1 4606212 4606742 D hypothetical protein 4606212..4606742 Mycobacterium smegmatis str. MC2 155 4536542 YP_888791.1 CDS MSMEG_4519 NC_008596.1 4606739 4607761 D NrtC protein 4606739..4607761 Mycobacterium smegmatis str. MC2 155 4535436 YP_888792.1 CDS MSMEG_4520 NC_008596.1 4607737 4608453 D identified by match to protein family HMM PF00005; sulfate/thiosulfate import ATP-binding protein CysA 4607737..4608453 Mycobacterium smegmatis str. MC2 155 4532853 YP_888793.1 CDS MSMEG_4521 NC_008596.1 4608450 4609616 D identified by match to protein family HMM TIGR01409; Tat (twin-arginine translocation) pathway signal sequence 4608450..4609616 Mycobacterium smegmatis str. MC2 155 4535273 YP_888794.1 CDS MSMEG_4523 NC_008596.1 4609613 4610410 D identified by match to protein family HMM PF00528; binding-protein-dependent transporters inner membrane component 4609613..4610410 Mycobacterium smegmatis str. MC2 155 4537487 YP_888795.1 CDS MSMEG_4522 NC_008596.1 4610407 4611492 R identified by similarity to GB:CAD18826.1; ISMsm2, transposase complement(4610407..4611492) Mycobacterium smegmatis str. MC2 155 4533216 YP_888796.1 CDS MSMEG_4524 NC_008596.1 4611535 4612887 R catalyzes conversion of chorismate to salicylate, in mycobactin siderophore construction; requires Mg(2+) for function; salicylate synthase MbtI complement(4611535..4612887) Mycobacterium smegmatis str. MC2 155 4536918 YP_888797.1 CDS MSMEG_4525 NC_008596.1 4612935 4614107 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(4612935..4614107) Mycobacterium smegmatis str. MC2 155 4536953 YP_888798.1 CDS MSMEG_4526 NC_008596.1 4614343 4614474 R hypothetical protein complement(4614343..4614474) Mycobacterium smegmatis str. MC2 155 4530901 YP_888799.1 CDS MSMEG_4527 NC_008596.1 4614429 4616138 D identified by match to protein family HMM PF01077; match to protein family HMM PF03460; ferredoxin sulfite reductase 4614429..4616138 Mycobacterium smegmatis str. MC2 155 4536168 YP_888800.1 CDS MSMEG_4528 NC_008596.1 4616144 4616854 D catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 4616144..4616854 Mycobacterium smegmatis str. MC2 155 4534726 YP_888801.1 CDS MSMEG_4529 NC_008596.1 4616851 4617564 D identified by match to protein family HMM PF01903; hypothetical protein 4616851..4617564 Mycobacterium smegmatis str. MC2 155 4534698 YP_888802.1 CDS cysA NC_008596.1 4617583 4618668 R identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM TIGR00968; sulfate ABC transporter ATP-binding protein complement(4617583..4618668) Mycobacterium smegmatis str. MC2 155 4532099 YP_888803.1 CDS cysW NC_008596.1 4618684 4619508 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140; sulfate ABC transporter permease CysW complement(4618684..4619508) Mycobacterium smegmatis str. MC2 155 4533664 YP_888804.1 CDS cysT NC_008596.1 4619505 4620362 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139; sulfate ABC transporter permease CysT complement(4619505..4620362) Mycobacterium smegmatis str. MC2 155 4535842 YP_888805.1 CDS MSMEG_4533 NC_008596.1 4620359 4621408 R identified by match to protein family HMM TIGR00971; sulfate-binding protein complement(4620359..4621408) Mycobacterium smegmatis str. MC2 155 4535623 YP_888806.1 CDS MSMEG_4534 NC_008596.1 4621748 4621951 R hypothetical protein complement(4621748..4621951) Mycobacterium smegmatis str. MC2 155 4536009 YP_888807.1 CDS MSMEG_4535 NC_008596.1 4622057 4624063 D identified by match to protein family HMM PF00723; glycoside hydrolase 4622057..4624063 Mycobacterium smegmatis str. MC2 155 4533923 YP_888808.1 CDS MSMEG_4536 NC_008596.1 4624067 4625287 R hypothetical protein complement(4624067..4625287) Mycobacterium smegmatis str. MC2 155 4534957 YP_888809.1 CDS MSMEG_4537 NC_008596.1 4625673 4626596 D major membrane protein I 4625673..4626596 Mycobacterium smegmatis str. MC2 155 4533694 YP_888810.1 CDS MSMEG_4538 NC_008596.1 4626583 4628262 D identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979; cysteine desulfurase 4626583..4628262 Mycobacterium smegmatis str. MC2 155 4532051 YP_888811.1 CDS MSMEG_4539 NC_008596.1 4628345 4629451 D alkanesulfonate monooxygenase 4628345..4629451 Mycobacterium smegmatis str. MC2 155 4535472 YP_888812.1 CDS MSMEG_4540 NC_008596.1 4629448 4630668 D identified by match to protein family HMM PF00583; hypothetical protein 4629448..4630668 Mycobacterium smegmatis str. MC2 155 4533567 YP_888813.1 CDS MSMEG_4541 NC_008596.1 4630773 4632392 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 4630773..4632392 Mycobacterium smegmatis str. MC2 155 4534635 YP_888814.1 CDS MSMEG_4542 NC_008596.1 4632389 4633327 D identified by match to protein family HMM PF00528; oligopeptide transport integral membrane protein 4632389..4633327 Mycobacterium smegmatis str. MC2 155 4535863 YP_888815.1 CDS MSMEG_4543 NC_008596.1 4633332 4634315 D identified by match to protein family HMM PF00528; ABC transporter 4633332..4634315 Mycobacterium smegmatis str. MC2 155 4532015 YP_888816.1 CDS MSMEG_4545 NC_008596.1 4634344 4636113 D identified by match to protein family HMM PF00496; extracellular solute-binding protein 4634344..4636113 Mycobacterium smegmatis str. MC2 155 4534396 YP_888817.1 CDS MSMEG_4544 NC_008596.1 4636110 4636661 R identified by match to protein family HMM PF05175; match to protein family HMM PF05724; methyltransferase small subunit complement(4636110..4636661) Mycobacterium smegmatis str. MC2 155 4537454 YP_888818.1 CDS MSMEG_4547 NC_008596.1 4637637 4638872 R identified by match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(4637637..4638872) Mycobacterium smegmatis str. MC2 155 4532077 YP_888819.1 CDS MSMEG_4548 NC_008596.1 4638869 4639852 R identified by match to protein family HMM PF00583; acetyltransferase, gnat family protein complement(4638869..4639852) Mycobacterium smegmatis str. MC2 155 4535565 YP_888820.1 CDS MSMEG_4549 NC_008596.1 4639849 4641354 R identified by match to protein family HMM PF00324; amino acid permease complement(4639849..4641354) Mycobacterium smegmatis str. MC2 155 4537375 YP_888821.1 CDS MSMEG_4550 NC_008596.1 4641611 4642816 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase 4641611..4642816 Mycobacterium smegmatis str. MC2 155 4536850 YP_888822.1 CDS MSMEG_4551 NC_008596.1 4642947 4644329 R monoxygenase complement(4642947..4644329) Mycobacterium smegmatis str. MC2 155 4534458 YP_888823.1 CDS ssuD NC_008596.1 4644326 4645630 R identified by match to protein family HMM PF00296; nitrilotriacetate monooxygenase component A complement(4644326..4645630) Mycobacterium smegmatis str. MC2 155 4534513 YP_888824.1 CDS MSMEG_4553 NC_008596.1 4645741 4646238 D identified by match to protein family HMM PF01590; GAF domain-containing protein 4645741..4646238 Mycobacterium smegmatis str. MC2 155 4536266 YP_888825.1 CDS MSMEG_4554 NC_008596.1 4646256 4646960 R serine/threonine protein kinase complement(4646256..4646960) Mycobacterium smegmatis str. MC2 155 4535540 YP_888826.1 CDS MSMEG_4555 NC_008596.1 4646989 4647762 R LppR protein complement(4646989..4647762) Mycobacterium smegmatis str. MC2 155 4537474 YP_888827.1 CDS lepA NC_008596.1 4647861 4649756 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(4647861..4649756) Mycobacterium smegmatis str. MC2 155 4537468 YP_888828.1 CDS MSMEG_4558 NC_008596.1 4649836 4650471 D hypothetical protein 4649836..4650471 Mycobacterium smegmatis str. MC2 155 4531541 YP_888829.1 CDS MSMEG_4557 NC_008596.1 4650468 4651241 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(4650468..4651241) Mycobacterium smegmatis str. MC2 155 4533502 YP_888830.1 CDS MSMEG_4559 NC_008596.1 4651238 4652257 R identified by match to protein family HMM PF00950; match to protein family HMM PF01032; ABC transporter complement(4651238..4652257) Mycobacterium smegmatis str. MC2 155 4536275 YP_888831.1 CDS MSMEG_4560 NC_008596.1 4652260 4653279 R identified by match to protein family HMM PF01497; periplasmic binding protein complement(4652260..4653279) Mycobacterium smegmatis str. MC2 155 4537574 YP_888832.1 CDS MSMEG_4561 NC_008596.1 4653276 4654298 R identified by match to protein family HMM PF01497; iron ABC transporter substrate-binding protein complement(4653276..4654298) Mycobacterium smegmatis str. MC2 155 4534722 YP_888833.1 CDS MSMEG_4563 NC_008596.1 4654776 4655399 R puromycin N-acetyltransferase complement(4654776..4655399) Mycobacterium smegmatis str. MC2 155 4536543 YP_888834.1 CDS MSMEG_4564 NC_008596.1 4655467 4655898 R identified by match to protein family HMM PF00571; hypothetical protein complement(4655467..4655898) Mycobacterium smegmatis str. MC2 155 4530974 YP_888835.1 CDS MSMEG_4565 NC_008596.1 4656041 4657063 D identified by match to protein family HMM PF00248; oxidoreductase 4656041..4657063 Mycobacterium smegmatis str. MC2 155 4531387 YP_888836.1 CDS MSMEG_4568 NC_008596.1 4658741 4659601 D member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 4658741..4659601 Mycobacterium smegmatis str. MC2 155 4535480 YP_888837.1 CDS MSMEG_4567 NC_008596.1 4659585 4660424 R identified by match to protein family HMM PF01841; hypothetical protein complement(4659585..4660424) Mycobacterium smegmatis str. MC2 155 4531240 YP_888838.1 CDS MSMEG_4569 NC_008596.1 4660425 4661402 R identified by similarity to GP:22294891; match to protein family HMM PF04168; hypothetical protein complement(4660425..4661402) Mycobacterium smegmatis str. MC2 155 4532421 YP_888839.1 CDS MSMEG_4570 NC_008596.1 4661412 4663040 R identified by match to protein family HMM PF04169; match to protein family HMM PF04174; hypothetical protein complement(4661412..4663040) Mycobacterium smegmatis str. MC2 155 4535448 YP_888840.1 CDS rpsT NC_008596.1 4663326 4663586 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 4663326..4663586 Mycobacterium smegmatis str. MC2 155 4535509 YP_888841.1 CDS MSMEG_4572 NC_008596.1 4663655 4664614 R identified by match to protein family HMM PF06144; hypothetical protein complement(4663655..4664614) Mycobacterium smegmatis str. MC2 155 4537550 YP_888842.1 CDS MSMEG_4573 NC_008596.1 4664622 4666136 R identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; competence protein complement(4664622..4666136) Mycobacterium smegmatis str. MC2 155 4536979 YP_888843.1 CDS MSMEG_4574 NC_008596.1 4666133 4667011 R identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426; DNA-binding protein complement(4666133..4667011) Mycobacterium smegmatis str. MC2 155 4536350 YP_888844.1 CDS MSMEG_4575 NC_008596.1 4667078 4668343 R hypothetical protein complement(4667078..4668343) Mycobacterium smegmatis str. MC2 155 4535765 YP_888845.1 CDS MSMEG_4576 NC_008596.1 4668449 4669255 R identified by match to protein family HMM PF01145; SpfH domain-containing protein complement(4668449..4669255) Mycobacterium smegmatis str. MC2 155 4531461 YP_888846.1 CDS MSMEG_4577 NC_008596.1 4669359 4670201 R identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; DegV family protein complement(4669359..4670201) Mycobacterium smegmatis str. MC2 155 4532058 YP_888847.1 CDS MSMEG_4578 NC_008596.1 4670203 4670961 R hypothetical protein complement(4670203..4670961) Mycobacterium smegmatis str. MC2 155 4535128 YP_888848.1 CDS MSMEG_4579 NC_008596.1 4670951 4671631 R identified by match to protein family HMM PF00300; phosphoglycerate mutase complement(4670951..4671631) Mycobacterium smegmatis str. MC2 155 4535734 YP_888849.1 CDS MSMEG_4580 NC_008596.1 4671642 4672043 R identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; hypothetical protein complement(4671642..4672043) Mycobacterium smegmatis str. MC2 155 4532829 YP_888850.1 CDS nadD NC_008596.1 4672040 4672708 R transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase complement(4672040..4672708) Mycobacterium smegmatis str. MC2 155 4535413 YP_888851.1 CDS MSMEG_4582 NC_008596.1 4672767 4674224 R identified by match to protein family HMM PF05762; hypothetical protein complement(4672767..4674224) Mycobacterium smegmatis str. MC2 155 4536340 YP_888852.1 CDS MSMEG_4583 NC_008596.1 4674237 4675133 R identified by match to protein family HMM PF07728; ATPase AAA complement(4674237..4675133) Mycobacterium smegmatis str. MC2 155 4534943 YP_888853.1 CDS proA NC_008596.1 4675173 4676447 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(4675173..4676447) Mycobacterium smegmatis str. MC2 155 4536453 YP_888854.1 CDS rbsK NC_008596.1 4676563 4677423 D identified by match to protein family HMM PF00294; ribokinase 4676563..4677423 Mycobacterium smegmatis str. MC2 155 4537436 YP_888855.1 CDS MSMEG_4586 NC_008596.1 4677428 4678480 R nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein complement(4677428..4678480) Mycobacterium smegmatis str. MC2 155 4534344 YP_888856.1 CDS MSMEG_4587 NC_008596.1 4678486 4679235 R identified by match to protein family HMM PF00005; aliphatic sulfonate ABC transporter ATP-binding protein complement(4678486..4679235) Mycobacterium smegmatis str. MC2 155 4533612 YP_888857.1 CDS MSMEG_4588 NC_008596.1 4679222 4680112 R identified by match to protein family HMM PF00528; nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein complement(4679222..4680112) Mycobacterium smegmatis str. MC2 155 4534358 YP_888858.1 CDS MSMEG_4589 NC_008596.1 4680109 4681665 R fused rhodanese/cystathionine beta-lyase complement(4680109..4681665) Mycobacterium smegmatis str. MC2 155 4536510 YP_888859.1 CDS ssuD NC_008596.1 4681779 4683116 R nitrilotriacetate monooxygenase component A complement(4681779..4683116) Mycobacterium smegmatis str. MC2 155 4531101 YP_888860.1 CDS MSMEG_4591 NC_008596.1 4683113 4683253 R hypothetical protein complement(4683113..4683253) Mycobacterium smegmatis str. MC2 155 4535709 YP_888861.1 CDS MSMEG_4592 NC_008596.1 4683272 4684516 D identified by match to protein family HMM PF00441; match to protein family HMM PF08028; acyl-CoA dehydrogenase 4683272..4684516 Mycobacterium smegmatis str. MC2 155 4535028 YP_888862.1 CDS MSMEG_4593 NC_008596.1 4684539 4685030 D acyl-CoA dehydrogenase 4684539..4685030 Mycobacterium smegmatis str. MC2 155 4536578 YP_888863.1 CDS MSMEG_4595 NC_008596.1 4685185 4685997 D serine/threonine protein kinase 4685185..4685997 Mycobacterium smegmatis str. MC2 155 4534160 YP_888864.1 CDS MSMEG_4594 NC_008596.1 4685629 4685778 R hypothetical protein complement(4685629..4685778) Mycobacterium smegmatis str. MC2 155 4532376 YP_888865.1 CDS MSMEG_4596 NC_008596.1 4686360 4687001 D hypothetical protein 4686360..4687001 Mycobacterium smegmatis str. MC2 155 4533204 YP_888866.1 CDS lppH NC_008596.1 4687021 4687713 R lipoprotein lpph complement(4687021..4687713) Mycobacterium smegmatis str. MC2 155 4534259 YP_888867.1 CDS lppH NC_008596.1 4687710 4688420 R lipoprotein lpph complement(4687710..4688420) Mycobacterium smegmatis str. MC2 155 4536977 YP_888868.1 CDS MSMEG_4599 NC_008596.1 4688858 4689808 R hypothetical protein complement(4688858..4689808) Mycobacterium smegmatis str. MC2 155 4532199 YP_888869.1 CDS MSMEG_4600 NC_008596.1 4690129 4690242 D hypothetical protein 4690129..4690242 Mycobacterium smegmatis str. MC2 155 4533151 YP_888870.1 CDS MSMEG_4602 NC_008596.1 4690236 4690391 D hypothetical protein 4690236..4690391 Mycobacterium smegmatis str. MC2 155 4535036 YP_888871.1 CDS MSMEG_4601 NC_008596.1 4690381 4691154 R identified by match to protein family HMM PF00165; AraC family transcriptional regulator complement(4690381..4691154) Mycobacterium smegmatis str. MC2 155 4536209 YP_888872.1 CDS MSMEG_4604 NC_008596.1 4692127 4692264 R hypothetical protein complement(4692127..4692264) Mycobacterium smegmatis str. MC2 155 4532089 YP_888873.1 CDS MSMEG_4606 NC_008596.1 4692803 4693741 R hypothetical protein complement(4692803..4693741) Mycobacterium smegmatis str. MC2 155 4532298 YP_888874.1 CDS MSMEG_4607 NC_008596.1 4692856 4693002 R hypothetical protein complement(4692856..4693002) Mycobacterium smegmatis str. MC2 155 4535121 YP_888875.1 CDS MSMEG_4608 NC_008596.1 4693090 4693281 R hypothetical protein complement(4693090..4693281) Mycobacterium smegmatis str. MC2 155 4536120 YP_888876.1 CDS MSMEG_4609 NC_008596.1 4694274 4695215 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(4694274..4695215) Mycobacterium smegmatis str. MC2 155 4535516 YP_888877.1 CDS MSMEG_4610 NC_008596.1 4695322 4696107 D identified by match to protein family HMM PF01177; IgiC 4695322..4696107 Mycobacterium smegmatis str. MC2 155 4536641 YP_888878.1 CDS MSMEG_4611 NC_008596.1 4696122 4697426 D identified by match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM PF07158; carrier protein 4696122..4697426 Mycobacterium smegmatis str. MC2 155 4535535 YP_888879.1 CDS MSMEG_4613 NC_008596.1 4698006 4698167 R hypothetical protein complement(4698006..4698167) Mycobacterium smegmatis str. MC2 155 4533451 YP_888880.1 CDS MSMEG_4614 NC_008596.1 4698213 4698959 R identified by match to protein family HMM PF02518; GAF family protein complement(4698213..4698959) Mycobacterium smegmatis str. MC2 155 4535067 YP_888881.1 CDS nadE NC_008596.1 4700974 4703016 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(4700974..4703016) Mycobacterium smegmatis str. MC2 155 4536944 YP_888882.1 CDS MSMEG_4618 NC_008596.1 4703074 4703613 D identified by match to protein family HMM PF00857; isochorismatase 4703074..4703613 Mycobacterium smegmatis str. MC2 155 4535584 YP_888883.1 CDS MSMEG_4620 NC_008596.1 4703663 4704511 D identified by match to protein family HMM PF02146; NAD-dependent deacetylase 1 4703663..4704511 Mycobacterium smegmatis str. MC2 155 4532313 YP_888884.1 CDS MSMEG_4619 NC_008596.1 4704480 4705739 R identified by match to protein family HMM PF00067; cytochrome P450 complement(4704480..4705739) Mycobacterium smegmatis str. MC2 155 4531885 YP_888885.1 CDS MSMEG_4622 NC_008596.1 4705806 4706447 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 4705806..4706447 Mycobacterium smegmatis str. MC2 155 4534192 YP_888886.1 CDS proB NC_008596.1 4706444 4707556 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(4706444..4707556) Mycobacterium smegmatis str. MC2 155 4531097 YP_888887.1 CDS obgE NC_008596.1 4707553 4709010 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(4707553..4709010) Mycobacterium smegmatis str. MC2 155 4536351 YP_888888.1 CDS rpmA NC_008596.1 4709102 4709368 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(4709102..4709368) Mycobacterium smegmatis str. MC2 155 4531875 YP_888889.1 CDS rplU NC_008596.1 4709385 4709696 R identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 complement(4709385..4709696) Mycobacterium smegmatis str. MC2 155 4533252 YP_888890.1 CDS MSMEG_4626 NC_008596.1 4709887 4713000 R identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757; ribonuclease, Rne/Rng family protein complement(4709887..4713000) Mycobacterium smegmatis str. MC2 155 4531291 YP_888891.1 CDS ndk NC_008596.1 4713398 4713817 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(4713398..4713817) Mycobacterium smegmatis str. MC2 155 4536899 YP_888892.1 CDS MSMEG_4628 NC_008596.1 4713903 4714307 R hypothetical protein complement(4713903..4714307) Mycobacterium smegmatis str. MC2 155 4537714 YP_888893.1 CDS valS NC_008596.1 4715751 4718369 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(4715751..4718369) Mycobacterium smegmatis str. MC2 155 4531664 YP_888894.1 CDS MSMEG_4631 NC_008596.1 4718475 4719089 R hypothetical protein complement(4718475..4719089) Mycobacterium smegmatis str. MC2 155 4535469 YP_888895.1 CDS MSMEG_4632 NC_008596.1 4719210 4720460 R identified by match to protein family HMM PF03435; saccharopine dehydrogenase complement(4719210..4720460) Mycobacterium smegmatis str. MC2 155 4537547 YP_888896.1 CDS MSMEG_4633 NC_008596.1 4720471 4722462 R identified by match to protein family HMM PF00326; match to protein family HMM PF05448; peptidase S9, prolyl oligopeptidase complement(4720471..4722462) Mycobacterium smegmatis str. MC2 155 4535554 YP_888897.1 CDS MSMEG_4634 NC_008596.1 4722488 4722637 R hypothetical protein complement(4722488..4722637) Mycobacterium smegmatis str. MC2 155 4531239 YP_888898.1 CDS MSMEG_4635 NC_008596.1 4722620 4723969 D identified by match to protein family HMM PF00909; ammonium transporter 4722620..4723969 Mycobacterium smegmatis str. MC2 155 4536593 YP_888899.1 CDS MSMEG_4636 NC_008596.1 4723973 4724191 D hypothetical protein 4723973..4724191 Mycobacterium smegmatis str. MC2 155 4531725 YP_888900.1 CDS MSMEG_4637 NC_008596.1 4724276 4725268 R hypothetical protein complement(4724276..4725268) Mycobacterium smegmatis str. MC2 155 4534279 YP_888901.1 CDS MSMEG_4638 NC_008596.1 4725265 4726206 R identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; vanillate O-demethylase complement(4725265..4726206) Mycobacterium smegmatis str. MC2 155 4537514 YP_888902.1 CDS MSMEG_4639 NC_008596.1 4726203 4726733 R hypothetical protein complement(4726203..4726733) Mycobacterium smegmatis str. MC2 155 4532294 YP_888903.1 CDS MSMEG_4641 NC_008596.1 4726899 4728047 D identified by match to protein family HMM PF01266; match to protein family HMM PF01494; salicylate hydroxylase 4726899..4728047 Mycobacterium smegmatis str. MC2 155 4531432 YP_888904.1 CDS MSMEG_4640 NC_008596.1 4728044 4728505 R identified by match to protein family HMM PF06737; hypothetical protein complement(4728044..4728505) Mycobacterium smegmatis str. MC2 155 4536068 YP_888905.1 CDS MSMEG_4642 NC_008596.1 4728360 4728740 D hypothetical protein 4728360..4728740 Mycobacterium smegmatis str. MC2 155 4531702 YP_888906.1 CDS MSMEG_4643 NC_008596.1 4728762 4729085 R identified by match to protein family HMM PF06737; resuscitation-promoting factor complement(4728762..4729085) Mycobacterium smegmatis str. MC2 155 4533690 YP_888907.1 CDS MSMEG_4644 NC_008596.1 4730153 4730716 R MobA; links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide; involved in molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein A complement(4730153..4730716) Mycobacterium smegmatis str. MC2 155 4530954 YP_888908.1 CDS orB NC_008596.1 4730736 4731764 R catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta complement(4730736..4731764) Mycobacterium smegmatis str. MC2 155 4533150 YP_888909.1 CDS MSMEG_4646 NC_008596.1 4731815 4733770 R identified by match to protein family HMM PF01855; pyruvate synthase complement(4731815..4733770) Mycobacterium smegmatis str. MC2 155 4533902 YP_888910.1 CDS MSMEG_4647 NC_008596.1 4734131 4734955 R identified by match to protein family HMM PF00294; carbohydrate kinase PfkB complement(4734131..4734955) Mycobacterium smegmatis str. MC2 155 4536922 YP_888911.1 CDS MSMEG_4648 NC_008596.1 4735102 4736106 R DNA-binding protein complement(4735102..4736106) Mycobacterium smegmatis str. MC2 155 4532940 YP_888912.1 CDS MSMEG_4649 NC_008596.1 4736191 4737387 D identified by match to protein family HMM PF05721; phytanoyl-CoA dioxygenase 4736191..4737387 Mycobacterium smegmatis str. MC2 155 4535225 YP_888913.1 CDS MSMEG_4650 NC_008596.1 4737384 4738391 D identified by match to protein family HMM PF01408; match to protein family HMM PF02894; oxidoreductase YisS 4737384..4738391 Mycobacterium smegmatis str. MC2 155 4533745 YP_888914.1 CDS MSMEG_4651 NC_008596.1 4738388 4739257 D identified by match to protein family HMM PF01261; AP endonuclease, family protein 2 4738388..4739257 Mycobacterium smegmatis str. MC2 155 4537664 YP_888915.1 CDS MSMEG_4652 NC_008596.1 4739254 4740246 D identified by match to protein family HMM PF01408; match to protein family HMM PF02894; D-oliose 4-ketoreductase 4739254..4740246 Mycobacterium smegmatis str. MC2 155 4536522 YP_888916.1 CDS MSMEG_4653 NC_008596.1 4740243 4741019 D identified by match to protein family HMM PF01261; AP endonuclease, family protein 2 superfamily protein 4740243..4741019 Mycobacterium smegmatis str. MC2 155 4533288 YP_888917.1 CDS MSMEG_4654 NC_008596.1 4741023 4742108 R identified by match to protein family HMM PF00248; aldo/keto reductase complement(4741023..4742108) Mycobacterium smegmatis str. MC2 155 4532950 YP_888918.1 CDS MSMEG_4655 NC_008596.1 4742250 4743161 D identified by match to protein family HMM PF00165; match to protein family HMM PF06719; AraC family transcriptional regulator 4742250..4743161 Mycobacterium smegmatis str. MC2 155 4533275 YP_888919.1 CDS MSMEG_4656 NC_008596.1 4743236 4744054 R identified by match to protein family HMM PF00005; sugar ABC transporter ATP-binding protein complement(4743236..4744054) Mycobacterium smegmatis str. MC2 155 4537283 YP_888920.1 CDS MSMEG_4657 NC_008596.1 4744059 4745117 R identified by match to protein family HMM PF02653; ABC transporter complement(4744059..4745117) Mycobacterium smegmatis str. MC2 155 4531076 YP_888921.1 CDS MSMEG_4658 NC_008596.1 4745120 4746109 R identified by match to protein family HMM PF00532; sugar ABC transporter substrate-binding protein complement(4745120..4746109) Mycobacterium smegmatis str. MC2 155 4531801 YP_888922.1 CDS MSMEG_4659 NC_008596.1 4746349 4747086 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator complement(4746349..4747086) Mycobacterium smegmatis str. MC2 155 4535917 YP_888923.1 CDS MSMEG_4661 NC_008596.1 4747283 4748260 D identified by match to protein family HMM PF00294; sugar kinase 4747283..4748260 Mycobacterium smegmatis str. MC2 155 4537544 YP_888924.1 CDS MSMEG_4660 NC_008596.1 4748250 4749158 R hypothetical protein complement(4748250..4749158) Mycobacterium smegmatis str. MC2 155 4532662 YP_888925.1 CDS MSMEG_4662 NC_008596.1 4748253 4749137 D identified by match to protein family HMM PF01791; deoxyribose-phosphate aldolase superfamily protein 4748253..4749137 Mycobacterium smegmatis str. MC2 155 4536728 YP_888926.1 CDS MSMEG_4663 NC_008596.1 4749139 4750014 D identified by match to protein family HMM PF06845; protein IolB 4749139..4750014 Mycobacterium smegmatis str. MC2 155 4537583 YP_888927.1 CDS MSMEG_4664 NC_008596.1 4750019 4751968 D identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; IolD protein 4750019..4751968 Mycobacterium smegmatis str. MC2 155 4537556 YP_888928.1 CDS MSMEG_4665 NC_008596.1 4751978 4752898 D identified by match to protein family HMM PF01261; IolE protein 4751978..4752898 Mycobacterium smegmatis str. MC2 155 4534589 YP_888929.1 CDS MSMEG_4666 NC_008596.1 4752923 4753960 D identified by match to protein family HMM PF01408; match to protein family HMM PF02894; myo-inositol 2-dehydrogenase 4752923..4753960 Mycobacterium smegmatis str. MC2 155 4534763 YP_888930.1 CDS MSMEG_4667 NC_008596.1 4753970 4754908 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(4753970..4754908) Mycobacterium smegmatis str. MC2 155 4531986 YP_888931.1 CDS MSMEG_4668 NC_008596.1 4755030 4757345 D identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01701; oxidoreductase alpha (molybdopterin) subunit 4755030..4757345 Mycobacterium smegmatis str. MC2 155 4537351 YP_888932.1 CDS fdhD NC_008596.1 4757345 4758169 D involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 4757345..4758169 Mycobacterium smegmatis str. MC2 155 4535506 YP_888933.1 CDS MSMEG_4670 NC_008596.1 4758307 4759647 D identified by match to protein family HMM PF00201; match to protein family HMM TIGR01426; N-glycosylation 4758307..4759647 Mycobacterium smegmatis str. MC2 155 4536513 YP_888934.1 CDS clpX NC_008596.1 4759715 4760995 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(4759715..4760995) Mycobacterium smegmatis str. MC2 155 4536733 YP_888935.1 CDS clpP NC_008596.1 4761452 4762108 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(4761452..4762108) Mycobacterium smegmatis str. MC2 155 4531075 YP_888936.1 CDS clpP NC_008596.1 4762105 4762716 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(4762105..4762716) Mycobacterium smegmatis str. MC2 155 4531883 YP_888937.1 CDS tig NC_008596.1 4762826 4764235 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(4762826..4764235) Mycobacterium smegmatis str. MC2 155 4536439 YP_888938.1 CDS MSMEG_4678 NC_008596.1 4764745 4765266 D hypothetical protein 4764745..4765266 Mycobacterium smegmatis str. MC2 155 4531114 YP_888939.1 CDS MSMEG_4677 NC_008596.1 4765128 4765307 R hypothetical protein complement(4765128..4765307) Mycobacterium smegmatis str. MC2 155 4535443 YP_888940.1 CDS MSMEG_4679 NC_008596.1 4765263 4765766 D hypothetical protein 4765263..4765766 Mycobacterium smegmatis str. MC2 155 4532079 YP_888941.1 CDS lipP NC_008596.1 4765880 4767085 D identified by similarity to PIR:JC2091; match to protein family HMM PF00144; carboxylesterase 4765880..4767085 Mycobacterium smegmatis str. MC2 155 4534831 YP_888942.1 CDS MSMEG_4681 NC_008596.1 4767137 4767955 D hypothetical protein 4767137..4767955 Mycobacterium smegmatis str. MC2 155 4532231 YP_888943.1 CDS MSMEG_4682 NC_008596.1 4767975 4769675 R identified by match to protein family HMM PF00999; Na+/H+ antiporter complement(4767975..4769675) Mycobacterium smegmatis str. MC2 155 4534886 YP_888944.1 CDS MSMEG_4683 NC_008596.1 4769713 4770519 R identified by match to protein family HMM PF01149; match to protein family HMM PF06831; formamidopyrimidine-DNA glycosylase complement(4769713..4770519) Mycobacterium smegmatis str. MC2 155 4534863 YP_888945.1 CDS MSMEG_4684 NC_008596.1 4770535 4771014 R catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B complement(4770535..4771014) Mycobacterium smegmatis str. MC2 155 4533543 YP_888946.1 CDS MSMEG_4686 NC_008596.1 4771078 4772004 D identified by match to protein family HMM PF00248; oxidoreductase YdbC 4771078..4772004 Mycobacterium smegmatis str. MC2 155 4534114 YP_888947.1 CDS MSMEG_4685 NC_008596.1 4771960 4772919 R identified by match to protein family HMM PF03171; oxidoreductase complement(4771960..4772919) Mycobacterium smegmatis str. MC2 155 4535998 YP_888948.1 CDS MSMEG_4687 NC_008596.1 4772916 4773356 R identified by match to protein family HMM PF00383; cytosine deaminase complement(4772916..4773356) Mycobacterium smegmatis str. MC2 155 4533989 YP_888949.1 CDS MSMEG_4688 NC_008596.1 4773420 4774028 R identified by match to protein family HMM PF01323; hypothetical protein complement(4773420..4774028) Mycobacterium smegmatis str. MC2 155 4532276 YP_888950.1 CDS MSMEG_4689 NC_008596.1 4774279 4774683 D identified by match to protein family HMM PF05305; hypothetical protein 4774279..4774683 Mycobacterium smegmatis str. MC2 155 4534951 YP_888951.1 CDS pepN NC_008596.1 4774721 4777303 D identified by match to protein family HMM PF01433; match to protein family HMM TIGR02412; aminopeptidase 4774721..4777303 Mycobacterium smegmatis str. MC2 155 4533863 YP_888952.1 CDS MSMEG_4691 NC_008596.1 4777394 4777744 D HNH nuclease 4777394..4777744 Mycobacterium smegmatis str. MC2 155 4537494 YP_888953.1 CDS MSMEG_4692 NC_008596.1 4777808 4778281 R hypothetical protein complement(4777808..4778281) Mycobacterium smegmatis str. MC2 155 4534952 YP_888954.1 CDS MSMEG_4693 NC_008596.1 4778268 4778507 R hypothetical protein complement(4778268..4778507) Mycobacterium smegmatis str. MC2 155 4533912 YP_888955.1 CDS MSMEG_4694 NC_008596.1 4778559 4779137 R identified by match to protein family HMM PF01844; HNH endonuclease complement(4778559..4779137) Mycobacterium smegmatis str. MC2 155 4531736 YP_888956.1 CDS MSMEG_4695 NC_008596.1 4779348 4779743 D identified by match to protein family HMM PF01152; hypothetical protein 4779348..4779743 Mycobacterium smegmatis str. MC2 155 4536126 YP_888957.1 CDS MSMEG_4696 NC_008596.1 4779743 4781281 D identified by match to protein family HMM PF00128; alpha-amylase 4779743..4781281 Mycobacterium smegmatis str. MC2 155 4532462 YP_888958.1 CDS MSMEG_4697 NC_008596.1 4781282 4781938 R hypothetical protein complement(4781282..4781938) Mycobacterium smegmatis str. MC2 155 4536952 YP_888959.1 CDS MSMEG_4698 NC_008596.1 4781935 4782342 R hypothetical protein complement(4781935..4782342) Mycobacterium smegmatis str. MC2 155 4531298 YP_888960.1 CDS MSMEG_4699 NC_008596.1 4782372 4787156 R identified by match to protein family HMM PF05088; NAD-glutamate dehydrogenase complement(4782372..4787156) Mycobacterium smegmatis str. MC2 155 4531915 YP_888961.1 CDS MSMEG_4700 NC_008596.1 4787325 4788998 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein complement(4787325..4788998) Mycobacterium smegmatis str. MC2 155 4534582 YP_888962.1 CDS MSMEG_4701 NC_008596.1 4789106 4789618 R identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; hypothetical protein complement(4789106..4789618) Mycobacterium smegmatis str. MC2 155 4534694 YP_888963.1 CDS MSMEG_4702 NC_008596.1 4789876 4791876 R identified by match to protein family HMM PF05425; ABC transporter permease complement(4789876..4791876) Mycobacterium smegmatis str. MC2 155 4531862 YP_888964.1 CDS MSMEG_4703 NC_008596.1 4791964 4794324 R PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase complement(4791964..4794324) Mycobacterium smegmatis str. MC2 155 4531316 YP_888965.1 CDS MSMEG_4704 NC_008596.1 4794321 4795847 R identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; acyltransferase complement(4794321..4795847) Mycobacterium smegmatis str. MC2 155 4534197 YP_888966.1 CDS MSMEG_4705 NC_008596.1 4795874 4797340 R identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946; acyltransferase complement(4795874..4797340) Mycobacterium smegmatis str. MC2 155 4533187 YP_888967.1 CDS MSMEG_4707 NC_008596.1 4797653 4798507 R identified by match to protein family HMM PF00561; non-heme bromoperoxidase BPO-A2 complement(4797653..4798507) Mycobacterium smegmatis str. MC2 155 4532611 YP_888968.1 CDS MSMEG_4708 NC_008596.1 4798800 4799402 D identified by match to protein family HMM PF05401; methyltransferase 4798800..4799402 Mycobacterium smegmatis str. MC2 155 4535657 YP_888969.1 CDS MSMEG_4709 NC_008596.1 4799413 4800162 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 4799413..4800162 Mycobacterium smegmatis str. MC2 155 4535599 YP_888970.1 CDS MSMEG_4710 NC_008596.1 4800165 4801385 R identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; branched-chain alpha-keto acid dehydrogenase subunit E2 complement(4800165..4801385) Mycobacterium smegmatis str. MC2 155 4531744 YP_888971.1 CDS MSMEG_4711 NC_008596.1 4801382 4802458 R identified by match to protein family HMM PF02779; match to protein family HMM PF02780; pyruvate dehydrogenase E1 component subunit beta complement(4801382..4802458) Mycobacterium smegmatis str. MC2 155 4531476 YP_888972.1 CDS MSMEG_4712 NC_008596.1 4802460 4803572 R identified by match to protein family HMM PF00676; pyruvate dehydrogenase E1 component subunit alpha complement(4802460..4803572) Mycobacterium smegmatis str. MC2 155 4531309 YP_888973.1 CDS MSMEG_4713 NC_008596.1 4803784 4804593 R identified by match to protein family HMM PF03328; HpcH/HpaI aldolase/citrate lyase complement(4803784..4804593) Mycobacterium smegmatis str. MC2 155 4532819 YP_888974.1 CDS MSMEG_4714 NC_008596.1 4804593 4805081 R identified by match to protein family HMM PF01575; MoaC domain-containing protein complement(4804593..4805081) Mycobacterium smegmatis str. MC2 155 4536554 YP_888975.1 CDS MSMEG_4715 NC_008596.1 4805090 4806253 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(4805090..4806253) Mycobacterium smegmatis str. MC2 155 4533169 YP_888976.1 CDS MSMEG_4716 NC_008596.1 4806250 4808259 R identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786; acetyl-/propionyl-coenzyme A carboxylase subunit alpha complement(4806250..4808259) Mycobacterium smegmatis str. MC2 155 4532612 YP_888977.1 CDS MSMEG_4717 NC_008596.1 4808256 4809797 R identified by match to protein family HMM PF01039; carboxyl transferase domain-containing protein complement(4808256..4809797) Mycobacterium smegmatis str. MC2 155 4533859 YP_888978.1 CDS MSMEG_4718 NC_008596.1 4809888 4810493 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 4809888..4810493 Mycobacterium smegmatis str. MC2 155 4533783 YP_888979.1 CDS MSMEG_4719 NC_008596.1 4810498 4812360 R identified by match to protein family HMM PF00326; match to protein family HMM PF02129; peptidase S9, prolyl oligopeptidase complement(4810498..4812360) Mycobacterium smegmatis str. MC2 155 4531688 YP_888980.1 CDS MSMEG_4720 NC_008596.1 4812497 4813300 D hypothetical protein 4812497..4813300 Mycobacterium smegmatis str. MC2 155 4535377 YP_888981.1 CDS MSMEG_4721 NC_008596.1 4813302 4814594 R identified by match to protein family HMM PF07690; permease of the major facilitator superfamily protein complement(4813302..4814594) Mycobacterium smegmatis str. MC2 155 4534633 YP_888982.1 CDS MSMEG_4722 NC_008596.1 4814638 4815444 D identified by match to protein family HMM PF00106; short-chain dehydrogenase 4814638..4815444 Mycobacterium smegmatis str. MC2 155 4536049 YP_888983.1 CDS MSMEG_4723 NC_008596.1 4815452 4817023 R identified by similarity to GB:BAC71887.1; match to protein family HMM PF05872; hypothetical protein complement(4815452..4817023) Mycobacterium smegmatis str. MC2 155 4534151 YP_888984.1 CDS MSMEG_4724 NC_008596.1 4817123 4817773 D 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 4817123..4817773 Mycobacterium smegmatis str. MC2 155 4536921 YP_888985.1 CDS MSMEG_4726 NC_008596.1 4818029 4818226 D carbamoyl-phosphate synthase small subunit 4818029..4818226 Mycobacterium smegmatis str. MC2 155 4533984 YP_888986.1 CDS MSMEG_4727 NC_008596.1 4819204 4825539 D identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801; mycocerosic acid synthase 4819204..4825539 Mycobacterium smegmatis str. MC2 155 4534621 YP_888987.1 CDS MSMEG_4728 NC_008596.1 4825597 4827039 D identified by match to protein family HMM PF00668; condensation domain-containing protein 4825597..4827039 Mycobacterium smegmatis str. MC2 155 4534953 YP_888988.1 CDS MSMEG_4729 NC_008596.1 4827036 4828424 D hypothetical protein 4827036..4828424 Mycobacterium smegmatis str. MC2 155 4535665 YP_888989.1 CDS MSMEG_4730 NC_008596.1 4828501 4829868 D hypothetical protein 4828501..4829868 Mycobacterium smegmatis str. MC2 155 4535699 YP_888990.1 CDS MSMEG_4731 NC_008596.1 4829885 4831618 D activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 4829885..4831618 Mycobacterium smegmatis str. MC2 155 4535094 YP_888991.1 CDS MSMEG_4732 NC_008596.1 4831644 4832453 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 4831644..4832453 Mycobacterium smegmatis str. MC2 155 4537266 YP_888992.1 CDS MSMEG_4733 NC_008596.1 4832458 4833228 R hypothetical protein complement(4832458..4833228) Mycobacterium smegmatis str. MC2 155 4533683 YP_888993.1 CDS MSMEG_4734 NC_008596.1 4833240 4835093 R hypothetical protein complement(4833240..4835093) Mycobacterium smegmatis str. MC2 155 4530945 YP_888994.1 CDS MSMEG_4735 NC_008596.1 4835122 4836006 R hypothetical protein complement(4835122..4836006) Mycobacterium smegmatis str. MC2 155 4533919 YP_888995.1 CDS MSMEG_4736 NC_008596.1 4836134 4837150 R hypothetical protein complement(4836134..4837150) Mycobacterium smegmatis str. MC2 155 4534599 YP_888996.1 CDS MSMEG_4737 NC_008596.1 4837198 4838157 R hypothetical protein complement(4837198..4838157) Mycobacterium smegmatis str. MC2 155 4532557 YP_888997.1 CDS MSMEG_4738 NC_008596.1 4838569 4839141 D hypothetical protein 4838569..4839141 Mycobacterium smegmatis str. MC2 155 4534461 YP_888998.1 CDS MSMEG_4739 NC_008596.1 4839149 4839829 R hypothetical protein complement(4839149..4839829) Mycobacterium smegmatis str. MC2 155 4534992 YP_888999.1 CDS MSMEG_4740 NC_008596.1 4839918 4841162 R identified by match to protein family HMM PF03033; glycosyltransferase 28 complement(4839918..4841162) Mycobacterium smegmatis str. MC2 155 4535840 YP_889000.1 CDS MSMEG_4741 NC_008596.1 4841337 4844360 D identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833; MmpL protein 4841337..4844360 Mycobacterium smegmatis str. MC2 155 4537727 YP_889001.1 CDS MSMEG_4742 NC_008596.1 4844394 4845170 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; clavaldehyde dehydrogenase complement(4844394..4845170) Mycobacterium smegmatis str. MC2 155 4535354 YP_889002.1 CDS MSMEG_4743 NC_008596.1 4845342 4846067 D identified by match to protein family HMM PF05988; hypothetical protein 4845342..4846067 Mycobacterium smegmatis str. MC2 155 4537409 YP_889003.1 CDS MSMEG_4744 NC_008596.1 4846064 4846534 D hypothetical protein 4846064..4846534 Mycobacterium smegmatis str. MC2 155 4531932 YP_889004.1 CDS MSMEG_4745 NC_008596.1 4846538 4847740 R identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein complement(4846538..4847740) Mycobacterium smegmatis str. MC2 155 4534947 YP_889005.1 CDS MSMEG_4747 NC_008596.1 4848080 4848241 R hypothetical protein complement(4848080..4848241) Mycobacterium smegmatis str. MC2 155 4531092 YP_889006.1 CDS MSMEG_4748 NC_008596.1 4848238 4848381 R hypothetical protein complement(4848238..4848381) Mycobacterium smegmatis str. MC2 155 4530864 YP_889007.1 CDS MSMEG_4749 NC_008596.1 4848475 4848681 R hypothetical protein complement(4848475..4848681) Mycobacterium smegmatis str. MC2 155 4536105 YP_889008.1 CDS MSMEG_4750 NC_008596.1 4848729 4848899 R ornithine carbamoyltransferase complement(4848729..4848899) Mycobacterium smegmatis str. MC2 155 4533574 YP_889009.1 CDS MSMEG_4751 NC_008596.1 4849104 4849265 D hypothetical protein 4849104..4849265 Mycobacterium smegmatis str. MC2 155 4535216 YP_889010.1 CDS MSMEG_4752 NC_008596.1 4849354 4849581 R hypothetical protein complement(4849354..4849581) Mycobacterium smegmatis str. MC2 155 4537394 YP_889011.1 CDS MSMEG_4753 NC_008596.1 4849686 4850159 D identified by match to protein family HMM PF00578; antioxidant, AhpC/TSA family protein 4849686..4850159 Mycobacterium smegmatis str. MC2 155 4532158 YP_889012.1 CDS MSMEG_4754 NC_008596.1 4850171 4851178 R identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367; K+-dependent Na+/Ca+ exchanger-like protein complement(4850171..4851178) Mycobacterium smegmatis str. MC2 155 4537675 YP_889013.1 CDS MSMEG_4755 NC_008596.1 4851185 4852504 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; hypothetical protein complement(4851185..4852504) Mycobacterium smegmatis str. MC2 155 4536276 YP_889014.1 CDS acpS NC_008596.1 4852549 4852941 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(4852549..4852941) Mycobacterium smegmatis str. MC2 155 4536674 YP_889015.1 CDS MSMEG_4757 NC_008596.1 4852999 4862268 R identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801; fatty acid synthase complement(4852999..4862268) Mycobacterium smegmatis str. MC2 155 4532653 YP_889016.1 CDS MSMEG_4758 NC_008596.1 4862285 4862494 D hypothetical protein 4862285..4862494 Mycobacterium smegmatis str. MC2 155 4531409 YP_889017.1 CDS MSMEG_4759 NC_008596.1 4862347 4862508 D hypothetical protein 4862347..4862508 Mycobacterium smegmatis str. MC2 155 4535287 YP_889018.1 CDS MSMEG_4761 NC_008596.1 4863586 4864692 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187; ABC transporter ATP-binding protein 4863586..4864692 Mycobacterium smegmatis str. MC2 155 4533387 YP_889019.1 CDS MSMEG_4762 NC_008596.1 4864713 4865918 D identified by match to protein family HMM PF01547; ABC transporter 4864713..4865918 Mycobacterium smegmatis str. MC2 155 4533975 YP_889020.1 CDS MSMEG_4763 NC_008596.1 4865897 4866736 D identified by match to protein family HMM PF00528; ABC transporter permease 4865897..4866736 Mycobacterium smegmatis str. MC2 155 4536700 YP_889021.1 CDS MSMEG_4764 NC_008596.1 4866733 4867536 D identified by match to protein family HMM PF00528; ABC transporter permease 4866733..4867536 Mycobacterium smegmatis str. MC2 155 4531065 YP_889022.1 CDS MSMEG_4765 NC_008596.1 4867557 4868219 R identified by match to protein family HMM PF00376; MerR family transcriptional regulator complement(4867557..4868219) Mycobacterium smegmatis str. MC2 155 4534559 YP_889023.1 CDS MSMEG_4767 NC_008596.1 4868495 4869766 D identified by match to protein family HMM PF07690; major facilitator superfamily protein permease 4868495..4869766 Mycobacterium smegmatis str. MC2 155 4534045 YP_889024.1 CDS ltrA NC_008596.1 4869751 4871082 R identified by match to protein family HMM PF06772; low temperature requirement protein LtrA complement(4869751..4871082) Mycobacterium smegmatis str. MC2 155 4532451 YP_889025.1 CDS MSMEG_4768 NC_008596.1 4871158 4871703 D transcriptional regulator 4871158..4871703 Mycobacterium smegmatis str. MC2 155 4532324 YP_889026.1 CDS MSMEG_4769 NC_008596.1 4871700 4871825 D hypothetical protein 4871700..4871825 Mycobacterium smegmatis str. MC2 155 4535874 YP_889027.1 CDS MSMEG_4770 NC_008596.1 4871838 4872440 R hypothetical protein complement(4871838..4872440) Mycobacterium smegmatis str. MC2 155 4533946 YP_889028.1 CDS MSMEG_4771 NC_008596.1 4872437 4873348 R hypothetical protein complement(4872437..4873348) Mycobacterium smegmatis str. MC2 155 4537554 YP_889029.1 CDS MSMEG_4772 NC_008596.1 4873491 4875002 R activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(4873491..4875002) Mycobacterium smegmatis str. MC2 155 4532342 YP_889030.1 CDS MSMEG_4773 NC_008596.1 4874999 4876189 R identified by match to protein family HMM PF04909; amidohydrolase complement(4874999..4876189) Mycobacterium smegmatis str. MC2 155 4535798 YP_889031.1 CDS MSMEG_4774 NC_008596.1 4876225 4877802 R identified by match to protein family HMM PF00501; AMP-dependent synthetase/ligase complement(4876225..4877802) Mycobacterium smegmatis str. MC2 155 4532712 YP_889032.1 CDS MSMEG_4775 NC_008596.1 4877847 4878575 D identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase 4877847..4878575 Mycobacterium smegmatis str. MC2 155 4531955 YP_889033.1 CDS MSMEG_4776 NC_008596.1 4878596 4879120 R glyoxalase/bleomycin resistance protein/dioxygenase complement(4878596..4879120) Mycobacterium smegmatis str. MC2 155 4535611 YP_889034.1 CDS MSMEG_4777 NC_008596.1 4879224 4879655 D identified by match to protein family HMM PF01796; hypothetical protein 4879224..4879655 Mycobacterium smegmatis str. MC2 155 4533156 YP_889035.1 CDS MSMEG_4778 NC_008596.1 4879668 4880813 D identified by match to protein family HMM PF02803; thiolase 4879668..4880813 Mycobacterium smegmatis str. MC2 155 4530816 YP_889036.1 CDS MSMEG_4779 NC_008596.1 4880896 4881501 R identified by match to protein family HMM PF00440; regulatory protein complement(4880896..4881501) Mycobacterium smegmatis str. MC2 155 4532808 YP_889037.1 CDS MSMEG_4780 NC_008596.1 4881695 4883008 D identified by match to protein family HMM PF00067; cytochrome p450 4881695..4883008 Mycobacterium smegmatis str. MC2 155 4533007 YP_889038.1 CDS MSMEG_4781 NC_008596.1 4883097 4883573 D hypothetical protein 4883097..4883573 Mycobacterium smegmatis str. MC2 155 4536607 YP_889039.1 CDS MSMEG_4782 NC_008596.1 4883577 4883996 D hypothetical protein 4883577..4883996 Mycobacterium smegmatis str. MC2 155 4535773 YP_889040.1 CDS MSMEG_4783 NC_008596.1 4884016 4884396 R hypothetical protein complement(4884016..4884396) Mycobacterium smegmatis str. MC2 155 4531667 YP_889041.1 CDS MSMEG_4784 NC_008596.1 4884580 4885089 D hypothetical protein 4884580..4885089 Mycobacterium smegmatis str. MC2 155 4534798 YP_889042.1 CDS MSMEG_4785 NC_008596.1 4885100 4886830 R identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; mce-family protein mce1f complement(4885100..4886830) Mycobacterium smegmatis str. MC2 155 4535266 YP_889043.1 CDS MSMEG_4786 NC_008596.1 4886830 4888230 R identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor mce family protein complement(4886830..4888230) Mycobacterium smegmatis str. MC2 155 4534531 YP_889044.1 CDS MSMEG_4787 NC_008596.1 4888227 4889687 R identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor mce family protein complement(4888227..4889687) Mycobacterium smegmatis str. MC2 155 4535676 YP_889045.1 CDS MSMEG_4789 NC_008596.1 4890232 4890726 R hypothetical protein complement(4890232..4890726) Mycobacterium smegmatis str. MC2 155 4533394 YP_889046.1 CDS MSMEG_4790 NC_008596.1 4890445 4891767 D identified by similarity to GP:150005; match to protein family HMM PF01610; IS1096, tnpA protein 4890445..4891767 Mycobacterium smegmatis str. MC2 155 4532988 YP_889047.1 CDS MSMEG_4791 NC_008596.1 4891775 4892476 R identified by similarity to GP:150004; match to protein family HMM PF07929; IS1096, tnpR protein complement(4891775..4892476) Mycobacterium smegmatis str. MC2 155 4536465 YP_889048.1 CDS MSMEG_4792 NC_008596.1 4892576 4893052 R identified by match to protein family HMM PF02470; virulence factor mce family protein complement(4892576..4893052) Mycobacterium smegmatis str. MC2 155 4533282 YP_889049.1 CDS MSMEG_4793 NC_008596.1 4893037 4894062 R identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor Mce family protein complement(4893037..4894062) Mycobacterium smegmatis str. MC2 155 4532136 YP_889050.1 CDS MSMEG_4794 NC_008596.1 4894059 4895333 R identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor complement(4894059..4895333) Mycobacterium smegmatis str. MC2 155 4536658 YP_889051.1 CDS MSMEG_4795 NC_008596.1 4895343 4896191 R identified by match to protein family HMM PF02405; ABC transporter complement(4895343..4896191) Mycobacterium smegmatis str. MC2 155 4535883 YP_889052.1 CDS MSMEG_4796 NC_008596.1 4896209 4896982 R identified by match to protein family HMM PF02405; hypothetical protein complement(4896209..4896982) Mycobacterium smegmatis str. MC2 155 4537160 YP_889053.1 CDS MSMEG_4797 NC_008596.1 4896996 4897121 R hypothetical protein complement(4896996..4897121) Mycobacterium smegmatis str. MC2 155 4532758 YP_889054.1 CDS MSMEG_4798 NC_008596.1 4897386 4898594 R identified by match to protein family HMM PF02515; L-carnitine dehydratase/bile acid-inducible protein F complement(4897386..4898594) Mycobacterium smegmatis str. MC2 155 4537091 YP_889055.1 CDS MSMEG_4799 NC_008596.1 4898623 4900095 R identified by match to protein family HMM PF00171; aldehyde dehydrogenase complement(4898623..4900095) Mycobacterium smegmatis str. MC2 155 4536382 YP_889056.1 CDS MSMEG_4800 NC_008596.1 4900364 4901065 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; 3-oxoacyl-ACP reductase 4900364..4901065 Mycobacterium smegmatis str. MC2 155 4533675 YP_889057.1 CDS MSMEG_4801 NC_008596.1 4901113 4901985 D identified by match to protein family HMM PF00106; carveol dehydrogenase 4901113..4901985 Mycobacterium smegmatis str. MC2 155 4533303 YP_889058.1 CDS MSMEG_4802 NC_008596.1 4902029 4902220 D hypothetical protein 4902029..4902220 Mycobacterium smegmatis str. MC2 155 4531459 YP_889059.1 CDS MSMEG_4803 NC_008596.1 4902298 4903659 D identified by match to protein family HMM PF00067; cytochrome P450 4902298..4903659 Mycobacterium smegmatis str. MC2 155 4535603 YP_889060.1 CDS MSMEG_4804 NC_008596.1 4903779 4904126 D hypothetical protein 4903779..4904126 Mycobacterium smegmatis str. MC2 155 4530990 YP_889061.1 CDS MSMEG_4805 NC_008596.1 4904142 4905317 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase complement(4904142..4905317) Mycobacterium smegmatis str. MC2 155 4536173 YP_889062.1 CDS MSMEG_4806 NC_008596.1 4905320 4906324 R identified by match to protein family HMM PF00441; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(4905320..4906324) Mycobacterium smegmatis str. MC2 155 4532749 YP_889063.1 CDS MSMEG_4807 NC_008596.1 4906661 4907713 D identified by match to protein family HMM PF04909; amidohydrolase 4906661..4907713 Mycobacterium smegmatis str. MC2 155 4536113 YP_889064.1 CDS MSMEG_4808 NC_008596.1 4907782 4908876 D identified by match to protein family HMM PF04909; amidohydrolase 4907782..4908876 Mycobacterium smegmatis str. MC2 155 4532215 YP_889065.1 CDS MSMEG_4809 NC_008596.1 4908876 4909268 D identified by match to protein family HMM PF00355; Rieske (2Fe-2S) domain-containing protein 4908876..4909268 Mycobacterium smegmatis str. MC2 155 4534752 YP_889066.1 CDS MSMEG_4810 NC_008596.1 4909265 4910176 D hypothetical protein 4909265..4910176 Mycobacterium smegmatis str. MC2 155 4532470 YP_889067.1 CDS MSMEG_4811 NC_008596.1 4910179 4910643 R hypothetical protein complement(4910179..4910643) Mycobacterium smegmatis str. MC2 155 4537336 YP_889068.1 CDS MSMEG_4812 NC_008596.1 4910683 4911978 D identified by match to protein family HMM PF01512; respiratory-chain NADH dehydrogenase domain-containing protein 4910683..4911978 Mycobacterium smegmatis str. MC2 155 4536575 YP_889069.1 CDS MSMEG_4813 NC_008596.1 4911975 4912205 D hypothetical protein 4911975..4912205 Mycobacterium smegmatis str. MC2 155 4534291 YP_889070.1 CDS MSMEG_4814 NC_008596.1 4912253 4913908 D identified by match to protein family HMM PF01796; hypothetical protein 4912253..4913908 Mycobacterium smegmatis str. MC2 155 4535081 YP_889071.1 CDS MSMEG_4815 NC_008596.1 4913911 4914807 D hypothetical protein 4913911..4914807 Mycobacterium smegmatis str. MC2 155 4533232 YP_889072.1 CDS MSMEG_4816 NC_008596.1 4914807 4915625 D identified by match to protein family HMM PF03446; match to protein family HMM PF03807; 6-phosphogluconate dehydrogenase 4914807..4915625 Mycobacterium smegmatis str. MC2 155 4535955 YP_889073.1 CDS MSMEG_4817 NC_008596.1 4915625 4916416 D identified by match to protein family HMM PF03446; match to protein family HMM PF03807; 6-phosphogluconate dehydrogenase 4915625..4916416 Mycobacterium smegmatis str. MC2 155 4535332 YP_889074.1 CDS MSMEG_4818 NC_008596.1 4916557 4917759 D identified by match to protein family HMM PF00067; cytochrome P450 4916557..4917759 Mycobacterium smegmatis str. MC2 155 4531523 YP_889075.1 CDS MSMEG_4819 NC_008596.1 4917759 4917959 D hypothetical protein 4917759..4917959 Mycobacterium smegmatis str. MC2 155 4534865 YP_889076.1 CDS MSMEG_4820 NC_008596.1 4917967 4918878 R identified by match to protein family HMM PF00296; hypothetical protein complement(4917967..4918878) Mycobacterium smegmatis str. MC2 155 4536310 YP_889077.1 CDS MSMEG_4821 NC_008596.1 4918894 4919184 R identified by match to protein family HMM PF07045; hypothetical protein complement(4918894..4919184) Mycobacterium smegmatis str. MC2 155 4536716 YP_889078.1 CDS MSMEG_4822 NC_008596.1 4919227 4919415 R hypothetical protein complement(4919227..4919415) Mycobacterium smegmatis str. MC2 155 4537075 YP_889079.1 CDS MSMEG_4823 NC_008596.1 4919412 4920698 R identified by match to protein family HMM PF00067; cytochrome p450 complement(4919412..4920698) Mycobacterium smegmatis str. MC2 155 4537695 YP_889080.1 CDS MSMEG_4824 NC_008596.1 4920923 4921702 D hypothetical protein 4920923..4921702 Mycobacterium smegmatis str. MC2 155 4531422 YP_889081.1 CDS MSMEG_4825 NC_008596.1 4921789 4922448 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 4921789..4922448 Mycobacterium smegmatis str. MC2 155 4535691 YP_889082.1 CDS MSMEG_4826 NC_008596.1 4922448 4923749 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase 4922448..4923749 Mycobacterium smegmatis str. MC2 155 4536597 YP_889083.1 CDS MSMEG_4827 NC_008596.1 4923746 4924777 D identified by match to protein family HMM PF01636; aminoglycoside phosphotransferase 4923746..4924777 Mycobacterium smegmatis str. MC2 155 4531715 YP_889084.1 CDS MSMEG_4828 NC_008596.1 4924779 4925753 D identified by match to protein family HMM PF00107; alcohol dehydrogenase 4924779..4925753 Mycobacterium smegmatis str. MC2 155 4537195 YP_889085.1 CDS MSMEG_4829 NC_008596.1 4925880 4927070 D identified by match to protein family HMM PF00067; cytochrome P450 4925880..4927070 Mycobacterium smegmatis str. MC2 155 4532804 YP_889086.1 CDS MSMEG_4830 NC_008596.1 4927084 4927587 R hypothetical protein complement(4927084..4927587) Mycobacterium smegmatis str. MC2 155 4535936 YP_889087.1 CDS MSMEG_4831 NC_008596.1 4927584 4928201 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(4927584..4928201) Mycobacterium smegmatis str. MC2 155 4531169 YP_889088.1 CDS MSMEG_4832 NC_008596.1 4928318 4929466 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(4928318..4929466) Mycobacterium smegmatis str. MC2 155 4537465 YP_889089.1 CDS MSMEG_4833 NC_008596.1 4929479 4930627 R identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acyl-CoA dehydrogenase complement(4929479..4930627) Mycobacterium smegmatis str. MC2 155 4531503 YP_889090.1 CDS MSMEG_4834 NC_008596.1 4930620 4931879 R identified by match to protein family HMM PF02515; L-carnitine dehydratase/bile acid-inducible protein F complement(4930620..4931879) Mycobacterium smegmatis str. MC2 155 4530958 YP_889091.1 CDS MSMEG_4835 NC_008596.1 4931885 4932643 R identified by match to protein family HMM PF00106; 3-oxoacyl-ACP reductase complement(4931885..4932643) Mycobacterium smegmatis str. MC2 155 4534717 YP_889092.1 CDS MSMEG_4836 NC_008596.1 4932660 4933868 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; FadE121 protein complement(4932660..4933868) Mycobacterium smegmatis str. MC2 155 4536290 YP_889093.1 CDS MSMEG_4837 NC_008596.1 4933892 4935187 R identified by match to protein family HMM PF04909; amidohydrolase complement(4933892..4935187) Mycobacterium smegmatis str. MC2 155 4537130 YP_889094.1 CDS MSMEG_4838 NC_008596.1 4935302 4935427 D hypothetical protein 4935302..4935427 Mycobacterium smegmatis str. MC2 155 4533744 YP_889095.1 CDS MSMEG_4839 NC_008596.1 4935469 4935999 D identified by match to protein family HMM PF02627; carboxymuconolactone decarboxylase 4935469..4935999 Mycobacterium smegmatis str. MC2 155 4531038 YP_889096.1 CDS MSMEG_4840 NC_008596.1 4936035 4937378 D identified by match to protein family HMM PF00355; Rieske (2Fe-2S) domain-containing protein 4936035..4937378 Mycobacterium smegmatis str. MC2 155 4534704 YP_889097.1 CDS MSMEG_4841 NC_008596.1 4937371 4937718 D hypothetical protein 4937371..4937718 Mycobacterium smegmatis str. MC2 155 4532230 YP_889098.1 CDS MSMEG_4842 NC_008596.1 4937721 4938941 D identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase 4937721..4938941 Mycobacterium smegmatis str. MC2 155 4531731 YP_889099.1 CDS MSMEG_4843 NC_008596.1 4938925 4939368 D hypothetical protein 4938925..4939368 Mycobacterium smegmatis str. MC2 155 4532704 YP_889100.1 CDS MSMEG_4844 NC_008596.1 4939369 4940490 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase 4939369..4940490 Mycobacterium smegmatis str. MC2 155 4533557 YP_889101.1 CDS MSMEG_4845 NC_008596.1 4940496 4941302 D identified by match to protein family HMM PF00441; match to protein family HMM PF08028; acyl-CoA dehydrogenase 4940496..4941302 Mycobacterium smegmatis str. MC2 155 4536013 YP_889102.1 CDS MSMEG_4846 NC_008596.1 4941334 4942116 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(4941334..4942116) Mycobacterium smegmatis str. MC2 155 4535913 YP_889103.1 CDS MSMEG_4847 NC_008596.1 4942335 4942997 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 4942335..4942997 Mycobacterium smegmatis str. MC2 155 4533962 YP_889104.1 CDS MSMEG_4848 NC_008596.1 4943034 4943165 D hypothetical protein 4943034..4943165 Mycobacterium smegmatis str. MC2 155 4533196 YP_889105.1 CDS MSMEG_4849 NC_008596.1 4943348 4944193 D identified by match to protein family HMM PF00106; carveol dehydrogenase 4943348..4944193 Mycobacterium smegmatis str. MC2 155 4534711 YP_889106.1 CDS MSMEG_4850 NC_008596.1 4944203 4945003 R identified by match to protein family HMM PF00106; short-chain dehydrogenase/reductase SDR complement(4944203..4945003) Mycobacterium smegmatis str. MC2 155 4531991 YP_889107.1 CDS MSMEG_4851 NC_008596.1 4945030 4947447 R identified by match to protein family HMM PF02515; caib/baif family protein complement(4945030..4947447) Mycobacterium smegmatis str. MC2 155 4533872 YP_889108.1 CDS MSMEG_4852 NC_008596.1 4947453 4948409 R identified by match to protein family HMM PF00378; enoyl-CoA hydratase complement(4947453..4948409) Mycobacterium smegmatis str. MC2 155 4530851 YP_889109.1 CDS MSMEG_4853 NC_008596.1 4948402 4949535 R identified by match to protein family HMM PF00557; peptidase, M24 family protein complement(4948402..4949535) Mycobacterium smegmatis str. MC2 155 4530897 YP_889110.1 CDS MSMEG_4854 NC_008596.1 4949525 4950802 R identified by match to protein family HMM PF00557; peptidase, M24 family protein complement(4949525..4950802) Mycobacterium smegmatis str. MC2 155 4532708 YP_889111.1 CDS MSMEG_4855 NC_008596.1 4950799 4951971 R identified by match to protein family HMM PF04909; amidohydrolase complement(4950799..4951971) Mycobacterium smegmatis str. MC2 155 4532275 YP_889112.1 CDS MSMEG_4856 NC_008596.1 4952011 4953243 R identified by match to protein family HMM PF00067; cytochrome P450 complement(4952011..4953243) Mycobacterium smegmatis str. MC2 155 4531696 YP_889113.1 CDS MSMEG_4857 NC_008596.1 4953276 4953470 R hypothetical protein complement(4953276..4953470) Mycobacterium smegmatis str. MC2 155 4535752 YP_889114.1 CDS MSMEG_4858 NC_008596.1 4953474 4954178 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(4953474..4954178) Mycobacterium smegmatis str. MC2 155 4533741 YP_889115.1 CDS MSMEG_4859 NC_008596.1 4954289 4955095 R identified by match to protein family HMM PF00106; oxidoreductase, short chain dehydrogenase/reductase complement(4954289..4955095) Mycobacterium smegmatis str. MC2 155 4530904 YP_889116.1 CDS MSMEG_4860 NC_008596.1 4955092 4955922 R identified by match to protein family HMM PF00561; alpha/beta hydrolase complement(4955092..4955922) Mycobacterium smegmatis str. MC2 155 4531282 YP_889117.1 CDS MSMEG_4861 NC_008596.1 4955940 4956926 R identified by match to protein family HMM PF04199; cyclase complement(4955940..4956926) Mycobacterium smegmatis str. MC2 155 4536309 YP_889118.1 CDS MSMEG_4862 NC_008596.1 4956939 4957775 R catalyzes the formation of 5-alpha-androstane-3,17-dione from androsterone; Acts on other 3-alpha-hydroxysteroids and on 9-, 11- and 15-hydroxyprostaglandin.; 3-alpha-hydroxysteroid dehydrogenase complement(4956939..4957775) Mycobacterium smegmatis str. MC2 155 4536871 YP_889119.1 CDS MSMEG_4863 NC_008596.1 4957779 4959089 R identified by match to protein family HMM PF00296; hypothetical protein complement(4957779..4959089) Mycobacterium smegmatis str. MC2 155 4532686 YP_889120.1 CDS MSMEG_4864 NC_008596.1 4959104 4960867 R initiates steroid ring degradation; catalyzes the transhydrogenation of 3-keto-4-ene-steroid to 3-keto-1,4-diene-steroid e.g., progesterone to 1,4-androstadiene-3,17-dione; 3-ketosteroid-delta-1-dehydrogenase complement(4959104..4960867) Mycobacterium smegmatis str. MC2 155 4535230 YP_889121.1 CDS mhpB NC_008596.1 4960864 4961784 R catalyzes the cleavage of 3-(2,3-dihydroxyphenyl) propionate into 2-hydroxy-6-oxonona-2,4-diene-1,9-dioate; part of the 3-phenylpropionic acid degradation pathway; member of the protocatechuate 4,5-dioxygenase family; 3-(2,3-dihydroxyphenyl)propionate dioxygenase complement(4960864..4961784) Mycobacterium smegmatis str. MC2 155 4531580 YP_889122.1 CDS mhpA NC_008596.1 4961732 4963423 R catalyzes the formation of 3-(2,3-dihydroxyphenyl)propionate from 3-(3-hydroxyphenyl)propionate; 3-(3-hydroxyphenyl)propionate hydroxylase complement(4961732..4963423) Mycobacterium smegmatis str. MC2 155 4535740 YP_889123.1 CDS MSMEG_4867 NC_008596.1 4963428 4964336 R identified by match to protein family HMM PF00561; 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase complement(4963428..4964336) Mycobacterium smegmatis str. MC2 155 4534756 YP_889124.1 CDS MSMEG_4868 NC_008596.1 4964467 4965192 D identified by match to protein family HMM PF01614; transcriptional regulator 4964467..4965192 Mycobacterium smegmatis str. MC2 155 4533599 YP_889125.1 CDS MSMEG_4870 NC_008596.1 4965207 4966847 D identified by match to protein family HMM PF00890; match to protein family HMM PF01266; FAD binding domain-containing protein 4965207..4966847 Mycobacterium smegmatis str. MC2 155 4536391 YP_889126.1 CDS MSMEG_4869 NC_008596.1 4966836 4967720 R identified by match to protein family HMM PF03308; match to protein family HMM TIGR00750; LAO/AO transporter ATPase complement(4966836..4967720) Mycobacterium smegmatis str. MC2 155 4530865 YP_889127.1 CDS MSMEG_4871 NC_008596.1 4967796 4968560 D identified by match to protein family HMM PF00106; 3-hydroxyacyl-CoA dehydrogenase 4967796..4968560 Mycobacterium smegmatis str. MC2 155 4530889 YP_889128.1 CDS MSMEG_4872 NC_008596.1 4968654 4969424 D identified by match to protein family HMM PF00106; short chain dehydrogenase 4968654..4969424 Mycobacterium smegmatis str. MC2 155 4535001 YP_889129.1 CDS MSMEG_4873 NC_008596.1 4969432 4970190 R identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase complement(4969432..4970190) Mycobacterium smegmatis str. MC2 155 4532300 YP_889130.1 CDS MSMEG_4874 NC_008596.1 4970204 4971292 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; acyl-CoA dehydrogenase complement(4970204..4971292) Mycobacterium smegmatis str. MC2 155 4534800 YP_889131.1 CDS MSMEG_4875 NC_008596.1 4971279 4972109 R identified by match to protein family HMM PF00441; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(4971279..4972109) Mycobacterium smegmatis str. MC2 155 4534813 YP_889132.1 CDS MSMEG_4876 NC_008596.1 4972087 4973466 R identified by match to protein family HMM PF00501; acyl-CoA synthetase complement(4972087..4973466) Mycobacterium smegmatis str. MC2 155 4535459 YP_889133.1 CDS MSMEG_4878 NC_008596.1 4973495 4973908 D identified by match to protein family HMM PF00111; 2Fe-2S iron-sulfur cluster binding domain-containing protein 4973495..4973908 Mycobacterium smegmatis str. MC2 155 4536646 YP_889134.1 CDS MSMEG_4877 NC_008596.1 4973893 4974972 R identified by match to protein family HMM PF02515; CaiB/BaiF family protein complement(4973893..4974972) Mycobacterium smegmatis str. MC2 155 4534345 YP_889135.1 CDS MSMEG_4879 NC_008596.1 4974969 4975925 R identified by match to protein family HMM PF00296; hypothetical protein complement(4974969..4975925) Mycobacterium smegmatis str. MC2 155 4531633 YP_889136.1 CDS MSMEG_4880 NC_008596.1 4975922 4976320 R identified by match to protein family HMM PF02310; match to protein family HMM TIGR00640; methylmalonyl-CoA mutase C-terminal domain-containing protein complement(4975922..4976320) Mycobacterium smegmatis str. MC2 155 4533764 YP_889137.1 CDS MSMEG_4881 NC_008596.1 4976416 4978005 R identified by match to protein family HMM PF01642; match to protein family HMM TIGR00641; methylmalonyl-CoA mutase, N-terminus of large subunit complement(4976416..4978005) Mycobacterium smegmatis str. MC2 155 4533439 YP_889138.1 CDS MSMEG_4882 NC_008596.1 4978264 4979124 D identified by match to protein family HMM PF00106; short chain dehydrogenase 4978264..4979124 Mycobacterium smegmatis str. MC2 155 4533928 YP_889139.1 CDS MSMEG_4883 NC_008596.1 4979121 4980611 D identified by match to protein family HMM PF00501; AMP-dependent synthetase/ligase 4979121..4980611 Mycobacterium smegmatis str. MC2 155 4537291 YP_889140.1 CDS MSMEG_4884 NC_008596.1 4980630 4980932 D hypothetical protein 4980630..4980932 Mycobacterium smegmatis str. MC2 155 4534352 YP_889141.1 CDS MSMEG_4886 NC_008596.1 4980943 4982244 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator family protein transporter 4980943..4982244 Mycobacterium smegmatis str. MC2 155 4534225 YP_889142.1 CDS MSMEG_4885 NC_008596.1 4982241 4983317 R hypothetical protein complement(4982241..4983317) Mycobacterium smegmatis str. MC2 155 4534981 YP_889143.1 CDS MSMEG_4887 NC_008596.1 4983314 4984516 R identified by match to protein family HMM PF00067; cytochrome P450 complement(4983314..4984516) Mycobacterium smegmatis str. MC2 155 4534615 YP_889144.1 CDS MSMEG_4888 NC_008596.1 4984613 4985614 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; ligand-binding /sugar binding domain-containing protein complement(4984613..4985614) Mycobacterium smegmatis str. MC2 155 4537545 YP_889145.1 CDS MSMEG_4889 NC_008596.1 4985611 4986933 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; integral membrane transporter complement(4985611..4986933) Mycobacterium smegmatis str. MC2 155 4532926 YP_889146.1 CDS ahpD NC_008596.1 4987073 4987606 R identified by match to protein family HMM PF02627; match to protein family HMM TIGR00777; match to protein family HMM TIGR00778; alkylhydroperoxidase complement(4987073..4987606) Mycobacterium smegmatis str. MC2 155 4535695 YP_889147.1 CDS MSMEG_4891 NC_008596.1 4987610 4988197 R identified by match to protein family HMM PF00578; alkylhydroperoxidase complement(4987610..4988197) Mycobacterium smegmatis str. MC2 155 4531887 YP_889148.1 CDS MSMEG_4892 NC_008596.1 4988175 4988669 R hypothetical protein complement(4988175..4988669) Mycobacterium smegmatis str. MC2 155 4531582 YP_889149.1 CDS MSMEG_4893 NC_008596.1 4988811 4990256 D neutral zinc metallopeptidase 4988811..4990256 Mycobacterium smegmatis str. MC2 155 4533078 YP_889150.1 CDS MSMEG_4894 NC_008596.1 4990300 4990884 D hypothetical protein 4990300..4990884 Mycobacterium smegmatis str. MC2 155 4532244 YP_889151.1 CDS MSMEG_4895 NC_008596.1 4990906 4991022 R hypothetical protein complement(4990906..4991022) Mycobacterium smegmatis str. MC2 155 4534684 YP_889152.1 CDS MSMEG_4896 NC_008596.1 4990987 4992840 D activates fatty acids by binding to coenzyme A; fatty-acid--CoA ligase 4990987..4992840 Mycobacterium smegmatis str. MC2 155 4534584 YP_889153.1 CDS MSMEG_4898 NC_008596.1 4993024 4993398 D hypothetical protein 4993024..4993398 Mycobacterium smegmatis str. MC2 155 4533905 YP_889154.1 CDS MSMEG_4900 NC_008596.1 4993399 4993743 D Pks14 protein 4993399..4993743 Mycobacterium smegmatis str. MC2 155 4532322 YP_889155.1 CDS rdgB NC_008596.1 4993740 4994342 R identified by match to protein family HMM PF01725; match to protein family HMM TIGR00042; non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family protein complement(4993740..4994342) Mycobacterium smegmatis str. MC2 155 4536250 YP_889156.1 CDS rph NC_008596.1 4994349 4995128 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(4994349..4995128) Mycobacterium smegmatis str. MC2 155 4532887 YP_889157.1 CDS MSMEG_4902 NC_008596.1 4995163 4995921 R metal-dependent hydrolase of the beta-lactamase superfamily protein III complement(4995163..4995921) Mycobacterium smegmatis str. MC2 155 4532848 YP_889158.1 CDS murI NC_008596.1 4995984 4996817 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(4995984..4996817) Mycobacterium smegmatis str. MC2 155 4531366 YP_889159.1 CDS MSMEG_4904 NC_008596.1 4996814 4997473 R identified by match to protein family HMM PF01694; rhomboid family protein complement(4996814..4997473) Mycobacterium smegmatis str. MC2 155 4536143 YP_889160.1 CDS cysM NC_008596.1 4997511 4998482 R identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; cysteine synthase B complement(4997511..4998482) Mycobacterium smegmatis str. MC2 155 4531247 YP_889161.1 CDS MSMEG_4906 NC_008596.1 4998490 4998771 R identified by match to protein family HMM PF02597; ThiS family protein complement(4998490..4998771) Mycobacterium smegmatis str. MC2 155 4532909 YP_889162.1 CDS MSMEG_4907 NC_008596.1 4998781 4999197 R identified by match to protein family HMM PF01398; Mov34/MPN/PAD-1 family protein complement(4998781..4999197) Mycobacterium smegmatis str. MC2 155 4534847 YP_889163.1 CDS MSMEG_4908 NC_008596.1 4999233 5000252 R identified by match to protein family HMM PF03576; endo-type 6-aminohexanoate oligomer hydrolase complement(4999233..5000252) Mycobacterium smegmatis str. MC2 155 4537443 YP_889164.1 CDS MSMEG_4909 NC_008596.1 5000259 5000837 R hypothetical protein complement(5000259..5000837) Mycobacterium smegmatis str. MC2 155 4535179 YP_889165.1 CDS clpS NC_008596.1 5000844 5001146 R involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS complement(5000844..5001146) Mycobacterium smegmatis str. MC2 155 4534369 YP_889166.1 CDS pncB NC_008596.1 5001213 5002517 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 5001213..5002517 Mycobacterium smegmatis str. MC2 155 4532879 YP_889167.1 CDS MSMEG_4912 NC_008596.1 5002521 5004572 D helicase 5002521..5004572 Mycobacterium smegmatis str. MC2 155 4530911 YP_889168.1 CDS MSMEG_4913 NC_008596.1 5004664 5006106 D LpqM protein 5004664..5006106 Mycobacterium smegmatis str. MC2 155 4535376 YP_889169.1 CDS MSMEG_4914 NC_008596.1 5006124 5006972 R virginiamycin B hydrolase complement(5006124..5006972) Mycobacterium smegmatis str. MC2 155 4536894 YP_889170.1 CDS MSMEG_4915 NC_008596.1 5006969 5009569 R identified by match to protein family HMM PF00343; match to protein family HMM TIGR02094; alpha-glucan phosphorylase complement(5006969..5009569) Mycobacterium smegmatis str. MC2 155 4533366 YP_889171.1 CDS MSMEG_4916 NC_008596.1 5009741 5011819 D identified by match to protein family HMM PF00128; alpha-amylase 5009741..5011819 Mycobacterium smegmatis str. MC2 155 4532624 YP_889172.1 CDS glgB NC_008596.1 5011827 5014037 D catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 5011827..5014037 Mycobacterium smegmatis str. MC2 155 4535775 YP_889173.1 CDS MSMEG_4917 NC_008596.1 5014034 5014924 R identified by match to protein family HMM PF00085; match to protein family HMM PF07719; hypothetical protein complement(5014034..5014924) Mycobacterium smegmatis str. MC2 155 4535445 YP_889174.1 CDS MSMEG_4919 NC_008596.1 5014938 5015321 R hypothetical protein complement(5014938..5015321) Mycobacterium smegmatis str. MC2 155 4537126 YP_889175.1 CDS MSMEG_4920 NC_008596.1 5015379 5016614 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase complement(5015379..5016614) Mycobacterium smegmatis str. MC2 155 4534455 YP_889176.1 CDS mce NC_008596.1 5016676 5017149 D identified by match to protein family HMM PF00903; match to protein family HMM TIGR03081; methylmalonyl-CoA epimerase 5016676..5017149 Mycobacterium smegmatis str. MC2 155 4534545 YP_889177.1 CDS MSMEG_4922 NC_008596.1 5017167 5017466 R hypothetical protein complement(5017167..5017466) Mycobacterium smegmatis str. MC2 155 4531331 YP_889178.1 CDS MSMEG_4923 NC_008596.1 5017466 5018140 R identified by match to protein family HMM PF01939; hypothetical protein complement(5017466..5018140) Mycobacterium smegmatis str. MC2 155 4536498 YP_889179.1 CDS MSMEG_4924 NC_008596.1 5018187 5019794 D identified by match to protein family HMM PF00211; match to protein family HMM PF00672; adenylate cyclase 5018187..5019794 Mycobacterium smegmatis str. MC2 155 4533899 YP_889180.1 CDS MSMEG_4925 NC_008596.1 5019822 5021360 D identified by match to protein family HMM PF00165; match to protein family HMM PF00730; match to protein family HMM PF02805; match to protein family HMM PF06029; transcriptional regulator, Ada family protein/DNA-3-methyladenine glycosylase II 5019822..5021360 Mycobacterium smegmatis str. MC2 155 4534263 YP_889181.1 CDS MSMEG_4926 NC_008596.1 5021497 5022819 D identified by similarity to GP:150005; match to protein family HMM PF01610; IS1096, tnpA protein 5021497..5022819 Mycobacterium smegmatis str. MC2 155 4532020 YP_889182.1 CDS MSMEG_4927 NC_008596.1 5022827 5023528 R identified by similarity to GP:150004; match to protein family HMM PF07929; IS1096, tnpR protein complement(5022827..5023528) Mycobacterium smegmatis str. MC2 155 4537616 YP_889183.1 CDS MSMEG_4928 NC_008596.1 5023632 5024129 D identified by match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589; methylated-DNA--protein-cysteine methyltransferase 5023632..5024129 Mycobacterium smegmatis str. MC2 155 4534797 YP_889184.1 CDS murA NC_008596.1 5029849 5031105 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(5029849..5031105) Mycobacterium smegmatis str. MC2 155 4537539 YP_889185.1 CDS MSMEG_4934 NC_008596.1 5031204 5031776 D identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636; ATP:cob(I)alamin adenosyltransferase 5031204..5031776 Mycobacterium smegmatis str. MC2 155 4536930 YP_889186.1 CDS MSMEG_4933 NC_008596.1 5031770 5032204 R hypothetical protein complement(5031770..5032204) Mycobacterium smegmatis str. MC2 155 4536905 YP_889187.1 CDS atpC NC_008596.1 5032225 5032590 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(5032225..5032590) Mycobacterium smegmatis str. MC2 155 4533087 YP_889188.1 CDS atpD NC_008596.1 5032627 5034054 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(5032627..5034054) Mycobacterium smegmatis str. MC2 155 4536303 YP_889189.1 CDS atpG NC_008596.1 5034092 5035015 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(5034092..5035015) Mycobacterium smegmatis str. MC2 155 4537316 YP_889190.1 CDS atpA NC_008596.1 5035023 5036669 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(5035023..5036669) Mycobacterium smegmatis str. MC2 155 4532985 YP_889191.1 CDS MSMEG_4939 NC_008596.1 5036716 5038053 R produces ATP from ADP in the presence of a proton gradient across the membrane; the subunit delta is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(5036716..5038053) Mycobacterium smegmatis str. MC2 155 4535783 YP_889192.1 CDS MSMEG_4940 NC_008596.1 5038054 5038566 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(5038054..5038566) Mycobacterium smegmatis str. MC2 155 4531820 YP_889193.1 CDS atpE NC_008596.1 5038576 5038836 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(5038576..5038836) Mycobacterium smegmatis str. MC2 155 4535462 YP_889194.1 CDS atpB NC_008596.1 5038938 5039696 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(5038938..5039696) Mycobacterium smegmatis str. MC2 155 4533210 YP_889195.1 CDS MSMEG_4943 NC_008596.1 5039725 5040171 R hypothetical protein complement(5039725..5040171) Mycobacterium smegmatis str. MC2 155 4536375 YP_889196.1 CDS MSMEG_4944 NC_008596.1 5040168 5040740 R hypothetical protein complement(5040168..5040740) Mycobacterium smegmatis str. MC2 155 4535651 YP_889197.1 CDS MSMEG_4945 NC_008596.1 5040459 5041781 D identified by similarity to GP:150005; match to protein family HMM PF01610; IS1096, tnpA protein 5040459..5041781 Mycobacterium smegmatis str. MC2 155 4532582 YP_889198.1 CDS MSMEG_4946 NC_008596.1 5041789 5042490 R identified by similarity to GP:150004; match to protein family HMM PF07929; IS1096, tnpR protein complement(5041789..5042490) Mycobacterium smegmatis str. MC2 155 4532153 YP_889199.1 CDS MSMEG_4947 NC_008596.1 5042722 5043942 R identified by match to protein family HMM PF00953; glycosyl trasferase complement(5042722..5043942) Mycobacterium smegmatis str. MC2 155 4532248 YP_889200.1 CDS MSMEG_4948 NC_008596.1 5043950 5044615 R identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein complement(5043950..5044615) Mycobacterium smegmatis str. MC2 155 4536002 YP_889201.1 CDS MSMEG_4949 NC_008596.1 5044653 5045498 R identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; HemK family modification methylase complement(5044653..5045498) Mycobacterium smegmatis str. MC2 155 4537082 YP_889202.1 CDS prfA NC_008596.1 5045509 5046588 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(5045509..5046588) Mycobacterium smegmatis str. MC2 155 4531441 YP_889203.1 CDS rpmE NC_008596.1 5046684 5046911 R identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105; 50S ribosomal protein L31 complement(5046684..5046911) Mycobacterium smegmatis str. MC2 155 4537250 YP_889204.1 CDS MSMEG_4952 NC_008596.1 5047025 5048623 R activates fatty acids by binding to coenzyme A; acyl-CoA synthetase complement(5047025..5048623) Mycobacterium smegmatis str. MC2 155 4533024 YP_889205.1 CDS MSMEG_4953 NC_008596.1 5048768 5049373 D identified by match to protein family HMM PF00440; transcriptional regulator 5048768..5049373 Mycobacterium smegmatis str. MC2 155 4534212 YP_889206.1 CDS rho NC_008596.1 5049428 5051422 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(5049428..5051422) Mycobacterium smegmatis str. MC2 155 4531491 YP_889207.1 CDS thrB NC_008596.1 5051708 5052661 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase complement(5051708..5052661) Mycobacterium smegmatis str. MC2 155 4537179 YP_889208.1 CDS thrC NC_008596.1 5052675 5053757 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(5052675..5053757) Mycobacterium smegmatis str. MC2 155 4536683 YP_889209.1 CDS MSMEG_4957 NC_008596.1 5053754 5055073 R catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase complement(5053754..5055073) Mycobacterium smegmatis str. MC2 155 4532581 YP_889210.1 CDS lysA NC_008596.1 5055070 5056494 R identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase complement(5055070..5056494) Mycobacterium smegmatis str. MC2 155 4533415 YP_889211.1 CDS argS NC_008596.1 5056491 5058143 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(5056491..5058143) Mycobacterium smegmatis str. MC2 155 4534266 YP_889212.1 CDS MSMEG_4961 NC_008596.1 5059059 5059334 R hypothetical protein complement(5059059..5059334) Mycobacterium smegmatis str. MC2 155 4533876 YP_889213.1 CDS MSMEG_4963 NC_008596.1 5059596 5060855 D identified by match to protein family HMM PF00668; peptide synthetase ScpsB 5059596..5060855 Mycobacterium smegmatis str. MC2 155 4531175 YP_889214.1 CDS MSMEG_4962 NC_008596.1 5060847 5062073 R identified by match to protein family HMM PF01266; match to protein family HMM PF01494; hypothetical protein complement(5060847..5062073) Mycobacterium smegmatis str. MC2 155 4530836 YP_889215.1 CDS MSMEG_4964 NC_008596.1 5062076 5062879 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(5062076..5062879) Mycobacterium smegmatis str. MC2 155 4531327 YP_889216.1 CDS MSMEG_4965 NC_008596.1 5062989 5063429 R hypothetical protein complement(5062989..5063429) Mycobacterium smegmatis str. MC2 155 4535818 YP_889217.1 CDS MSMEG_4966 NC_008596.1 5063477 5064157 R identified by match to protein family HMM PF05988; CalU12 protein complement(5063477..5064157) Mycobacterium smegmatis str. MC2 155 4532037 YP_889218.1 CDS MSMEG_4967 NC_008596.1 5064154 5065035 R identified by match to protein family HMM PF00296; hypothetical protein complement(5064154..5065035) Mycobacterium smegmatis str. MC2 155 4536571 YP_889219.1 CDS MSMEG_4968 NC_008596.1 5065204 5066415 D identified by match to protein family HMM PF02518; match to protein family HMM PF07730; two-component system sensor kinase 5065204..5066415 Mycobacterium smegmatis str. MC2 155 4535633 YP_889220.1 CDS MSMEG_4969 NC_008596.1 5066403 5067047 D identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545; two-component system response regulator 5066403..5067047 Mycobacterium smegmatis str. MC2 155 4535254 YP_889221.1 CDS MSMEG_4970 NC_008596.1 5067065 5067952 D hypothetical protein 5067065..5067952 Mycobacterium smegmatis str. MC2 155 4533462 YP_889222.1 CDS MSMEG_4971 NC_008596.1 5067953 5068975 R identified by match to protein family HMM PF03060; oxidoreductase complement(5067953..5068975) Mycobacterium smegmatis str. MC2 155 4532478 YP_889223.1 CDS MSMEG_4972 NC_008596.1 5068972 5069505 R identified by match to protein family HMM PF00583; acetyltransferase complement(5068972..5069505) Mycobacterium smegmatis str. MC2 155 4531027 YP_889224.1 CDS MSMEG_4973 NC_008596.1 5069552 5069935 D identified by match to protein family HMM PF00903; glyoxalase/bleomycin resistance protein/dioxygenase 5069552..5069935 Mycobacterium smegmatis str. MC2 155 4534059 YP_889225.1 CDS MSMEG_4974 NC_008596.1 5069936 5070406 R identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; rrf2 family transcriptional regulator complement(5069936..5070406) Mycobacterium smegmatis str. MC2 155 4535375 YP_889226.1 CDS MSMEG_4975 NC_008596.1 5070449 5071123 R identified by match to protein family HMM PF01243; flavin-nucleotide-binding protein complement(5070449..5071123) Mycobacterium smegmatis str. MC2 155 4536081 YP_889227.1 CDS MSMEG_4976 NC_008596.1 5071120 5071716 R identified by match to protein family HMM PF00857; isochorismatase hydrolase complement(5071120..5071716) Mycobacterium smegmatis str. MC2 155 4536363 YP_889228.1 CDS MSMEG_4977 NC_008596.1 5071765 5072496 R identified by similarity to SP:P22255; match to protein family HMM PF00459; 3'(2'),5'-bisphosphate nucleotidase complement(5071765..5072496) Mycobacterium smegmatis str. MC2 155 4536744 YP_889229.1 CDS cysNC NC_008596.1 5072493 5074346 R in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from EScherichia coli involved in cysteine biosynthesis; bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase complement(5072493..5074346) Mycobacterium smegmatis str. MC2 155 4533278 YP_889230.1 CDS cysD NC_008596.1 5074346 5075281 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(5074346..5075281) Mycobacterium smegmatis str. MC2 155 4537710 YP_889231.1 CDS MSMEG_4980 NC_008596.1 5075384 5076751 R identified by match to protein family HMM PF07690; major facilitator superfamily protein complement(5075384..5076751) Mycobacterium smegmatis str. MC2 155 4536129 YP_889232.1 CDS MSMEG_4981 NC_008596.1 5076771 5077787 R identified by match to protein family HMM PF01636; phosphotransferase enzyme family protein complement(5076771..5077787) Mycobacterium smegmatis str. MC2 155 4532111 YP_889233.1 CDS MSMEG_4982 NC_008596.1 5077781 5078908 R hypothetical protein complement(5077781..5078908) Mycobacterium smegmatis str. MC2 155 4535856 YP_889234.1 CDS MSMEG_4983 NC_008596.1 5078986 5079549 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 5078986..5079549 Mycobacterium smegmatis str. MC2 155 4536517 YP_889235.1 CDS MSMEG_4984 NC_008596.1 5079613 5080017 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; hypothetical protein 5079613..5080017 Mycobacterium smegmatis str. MC2 155 4535990 YP_889236.1 CDS MSMEG_4985 NC_008596.1 5080106 5080597 R identified by match to protein family HMM PF00484; carbonic anhydrase complement(5080106..5080597) Mycobacterium smegmatis str. MC2 155 4530868 YP_889237.1 CDS MSMEG_4986 NC_008596.1 5080643 5082547 R identified by match to protein family HMM PF02366; glycosyl transferase family protein complement(5080643..5082547) Mycobacterium smegmatis str. MC2 155 4536859 YP_889238.1 CDS MSMEG_4987 NC_008596.1 5082551 5083849 R identified by match to protein family HMM PF00535; match to protein family HMM PF04138; glycosyl transferase family protein complement(5082551..5083849) Mycobacterium smegmatis str. MC2 155 4533441 YP_889239.1 CDS MSMEG_4988 NC_008596.1 5083905 5085776 R identified by match to protein family HMM PF02366; integral membrane protein complement(5083905..5085776) Mycobacterium smegmatis str. MC2 155 4535008 YP_889240.1 CDS MSMEG_4989 NC_008596.1 5085828 5087411 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(5085828..5087411) Mycobacterium smegmatis str. MC2 155 4530823 YP_889241.1 CDS MSMEG_4990 NC_008596.1 5087389 5088138 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(5087389..5088138) Mycobacterium smegmatis str. MC2 155 4536780 YP_889242.1 CDS MSMEG_4992 NC_008596.1 5088250 5088714 D hypothetical protein 5088250..5088714 Mycobacterium smegmatis str. MC2 155 4531907 YP_889243.1 CDS MSMEG_4991 NC_008596.1 5088696 5088929 R hypothetical protein complement(5088696..5088929) Mycobacterium smegmatis str. MC2 155 4533249 YP_889244.1 CDS MSMEG_4993 NC_008596.1 5089057 5089329 R hypothetical protein complement(5089057..5089329) Mycobacterium smegmatis str. MC2 155 4535194 YP_889245.1 CDS MSMEG_4994 NC_008596.1 5089394 5089675 D flagella membrane glycoprotein 1B 5089394..5089675 Mycobacterium smegmatis str. MC2 155 4532830 YP_889246.1 CDS MSMEG_4995 NC_008596.1 5089843 5090820 D identified by match to protein family HMM PF00528; oligopeptide transporter permease AppB 5089843..5090820 Mycobacterium smegmatis str. MC2 155 4534681 YP_889247.1 CDS oppC NC_008596.1 5090817 5091749 D identified by match to protein family HMM PF00528; ABC transporter permease 5090817..5091749 Mycobacterium smegmatis str. MC2 155 4534858 YP_889248.1 CDS oppD NC_008596.1 5091746 5093590 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; ABC transporter ATP-binding protein 5091746..5093590 Mycobacterium smegmatis str. MC2 155 4534251 YP_889249.1 CDS MSMEG_4999 NC_008596.1 5093630 5095336 D identified by match to protein family HMM PF00496; extracellular solute-binding protein 5093630..5095336 Mycobacterium smegmatis str. MC2 155 4532261 YP_889250.1 CDS MSMEG_4998 NC_008596.1 5095326 5096555 R identified by match to protein family HMM PF00561; alpha/beta hydrolase complement(5095326..5096555) Mycobacterium smegmatis str. MC2 155 4532315 YP_889251.1 CDS MSMEG_5001 NC_008596.1 5096638 5097858 D identified by match to protein family HMM PF08028; pesticide degrading monooxygenase 5096638..5097858 Mycobacterium smegmatis str. MC2 155 4537521 YP_889252.1 CDS MSMEG_5000 NC_008596.1 5097849 5098754 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(5097849..5098754) Mycobacterium smegmatis str. MC2 155 4533875 YP_889253.1 CDS MSMEG_5003 NC_008596.1 5098832 5099509 D identified by match to protein family HMM PF01596; O-methyltransferase, family protein 3 5098832..5099509 Mycobacterium smegmatis str. MC2 155 4532336 YP_889254.1 CDS MSMEG_5002 NC_008596.1 5099506 5102139 R hypothetical protein complement(5099506..5102139) Mycobacterium smegmatis str. MC2 155 4535160 YP_889255.1 CDS MSMEG_5004 NC_008596.1 5102136 5103290 R identified by match to protein family HMM PF00149; DNA repair exonuclease complement(5102136..5103290) Mycobacterium smegmatis str. MC2 155 4534126 YP_889256.1 CDS MSMEG_5006 NC_008596.1 5103405 5103905 D identified by match to protein family HMM PF00300; phosphohistidine phosphatase 5103405..5103905 Mycobacterium smegmatis str. MC2 155 4534794 YP_889257.1 CDS MSMEG_5005 NC_008596.1 5103902 5104462 R LprC protein complement(5103902..5104462) Mycobacterium smegmatis str. MC2 155 4533057 YP_889258.1 CDS MSMEG_5007 NC_008596.1 5104459 5104992 R LprB protein complement(5104459..5104992) Mycobacterium smegmatis str. MC2 155 4531963 YP_889259.1 CDS MSMEG_5008 NC_008596.1 5105176 5106912 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein 5105176..5106912 Mycobacterium smegmatis str. MC2 155 4531083 YP_889260.1 CDS MSMEG_5009 NC_008596.1 5106924 5108801 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter 5106924..5108801 Mycobacterium smegmatis str. MC2 155 4533967 YP_889261.1 CDS MSMEG_5010 NC_008596.1 5108808 5109329 R hypothetical protein complement(5108808..5109329) Mycobacterium smegmatis str. MC2 155 4535069 YP_889262.1 CDS MSMEG_5012 NC_008596.1 5109367 5109666 D trans-sialidase 5109367..5109666 Mycobacterium smegmatis str. MC2 155 4534191 YP_889263.1 CDS MSMEG_5011 NC_008596.1 5109397 5109594 R hypothetical protein complement(5109397..5109594) Mycobacterium smegmatis str. MC2 155 4536019 YP_889264.1 CDS MSMEG_5013 NC_008596.1 5109663 5110502 D identified by match to protein family HMM PF01987; hypothetical protein 5109663..5110502 Mycobacterium smegmatis str. MC2 155 4533161 YP_889265.1 CDS MSMEG_5014 NC_008596.1 5110506 5112737 R identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; ATPase P complement(5110506..5112737) Mycobacterium smegmatis str. MC2 155 4536678 YP_889266.1 CDS MSMEG_5015 NC_008596.1 5112759 5113583 R hypothetical protein complement(5112759..5113583) Mycobacterium smegmatis str. MC2 155 4533093 YP_889267.1 CDS MSMEG_5016 NC_008596.1 5113573 5113779 R identified by match to protein family HMM PF00403; hypothetical protein complement(5113573..5113779) Mycobacterium smegmatis str. MC2 155 4532542 YP_889268.1 CDS MSMEG_5017 NC_008596.1 5113830 5114435 R identified by match to protein family HMM PF03713; lipoprotein complement(5113830..5114435) Mycobacterium smegmatis str. MC2 155 4536260 YP_889269.1 CDS MSMEG_5018 NC_008596.1 5114459 5115583 R identified by match to protein family HMM PF00211; adenylate and guanylate cyclase catalytic domain-containing protein complement(5114459..5115583) Mycobacterium smegmatis str. MC2 155 4535256 YP_889270.1 CDS MSMEG_5019 NC_008596.1 5115599 5116885 R identified by match to protein family HMM PF01590; regulatory protein complement(5115599..5116885) Mycobacterium smegmatis str. MC2 155 4535248 YP_889271.1 CDS MSMEG_5020 NC_008596.1 5116927 5117706 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM TIGR02415; acetoin(diacetyl) reductase complement(5116927..5117706) Mycobacterium smegmatis str. MC2 155 4534555 YP_889272.1 CDS MSMEG_5021 NC_008596.1 5117738 5118784 R identified by match to protein family HMM PF00107; alcohol dehydrogenase complement(5117738..5118784) Mycobacterium smegmatis str. MC2 155 4536308 YP_889273.1 CDS MSMEG_5022 NC_008596.1 5118895 5120736 D identified by match to protein family HMM PF07992; flavin-containing monooxygenase FMO 5118895..5120736 Mycobacterium smegmatis str. MC2 155 4537485 YP_889274.1 CDS MSMEG_5023 NC_008596.1 5120775 5121482 D identified by match to protein family HMM PF01522; chitooligosaccharide deacetylase 5120775..5121482 Mycobacterium smegmatis str. MC2 155 4533475 YP_889275.1 CDS MSMEG_5024 NC_008596.1 5121479 5121967 D T/U mismatch-specific DNA glycosylase 5121479..5121967 Mycobacterium smegmatis str. MC2 155 4537360 YP_889276.1 CDS MSMEG_5026 NC_008596.1 5122023 5123474 D identified by match to protein family HMM PF02720; hypothetical protein 5122023..5123474 Mycobacterium smegmatis str. MC2 155 4534150 YP_889277.1 CDS MSMEG_5025 NC_008596.1 5123453 5124289 R transcriptional regulator complement(5123453..5124289) Mycobacterium smegmatis str. MC2 155 4535092 YP_889278.1 CDS MSMEG_5027 NC_008596.1 5124317 5124787 D identified by match to protein family HMM PF00903; glyoxalase 5124317..5124787 Mycobacterium smegmatis str. MC2 155 4536721 YP_889279.1 CDS MSMEG_5028 NC_008596.1 5124797 5125234 D identified by match to protein family HMM PF01230; HIT family protein 5124797..5125234 Mycobacterium smegmatis str. MC2 155 4533102 YP_889280.1 CDS MSMEG_5030 NC_008596.1 5125244 5125693 D identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026; hypothetical protein 5125244..5125693 Mycobacterium smegmatis str. MC2 155 4530850 YP_889281.1 CDS MSMEG_5029 NC_008596.1 5125690 5126739 R identified by match to protein family HMM PF00296; alkanal monooxygenase subunit alpha complement(5125690..5126739) Mycobacterium smegmatis str. MC2 155 4532299 YP_889282.1 CDS MSMEG_5031 NC_008596.1 5126753 5127625 R identified by match to protein family HMM PF03167; uracil-DNA glycosylase complement(5126753..5127625) Mycobacterium smegmatis str. MC2 155 4534622 YP_889283.1 CDS MSMEG_5032 NC_008596.1 5128678 5129328 R identified by match to protein family HMM PF01638; transcriptional regulator complement(5128678..5129328) Mycobacterium smegmatis str. MC2 155 4537189 YP_889284.1 CDS MSMEG_5034 NC_008596.1 5129405 5130091 D hypothetical protein 5129405..5130091 Mycobacterium smegmatis str. MC2 155 4532330 YP_889285.1 CDS MSMEG_5035 NC_008596.1 5130102 5130584 D hypothetical protein 5130102..5130584 Mycobacterium smegmatis str. MC2 155 4537382 YP_889286.1 CDS MSMEG_5037 NC_008596.1 5130603 5131970 D identified by match to protein family HMM PF01565; match to protein family HMM PF02913; oxidoreductase, FAD-binding 5130603..5131970 Mycobacterium smegmatis str. MC2 155 4533712 YP_889287.1 CDS MSMEG_5036 NC_008596.1 5131967 5132719 R identified by match to protein family HMM PF01694; rhomboid family protein complement(5131967..5132719) Mycobacterium smegmatis str. MC2 155 4535475 YP_889288.1 CDS MSMEG_5038 NC_008596.1 5132901 5134121 D identified by match to protein family HMM PF00067; cytochrome P450 5132901..5134121 Mycobacterium smegmatis str. MC2 155 4537563 YP_889289.1 CDS MSMEG_5040 NC_008596.1 5134121 5134708 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 5134121..5134708 Mycobacterium smegmatis str. MC2 155 4532506 YP_889290.1 CDS MSMEG_5039 NC_008596.1 5134693 5135370 R identified by match to protein family HMM PF04954; match to protein family HMM PF08021; siderophore-interacting protein complement(5134693..5135370) Mycobacterium smegmatis str. MC2 155 4536165 YP_889291.1 CDS MSMEG_5041 NC_008596.1 5135426 5136574 R identified by match to protein family HMM PF01757; acyltransferase complement(5135426..5136574) Mycobacterium smegmatis str. MC2 155 4535679 YP_889292.1 CDS MSMEG_5042 NC_008596.1 5136571 5138316 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; ATP-dependent rna helicase, dead/deah box family protein complement(5136571..5138316) Mycobacterium smegmatis str. MC2 155 4536753 YP_889293.1 CDS MSMEG_5043 NC_008596.1 5138407 5138946 D LprE protein 5138407..5138946 Mycobacterium smegmatis str. MC2 155 4536587 YP_889294.1 CDS MSMEG_5044 NC_008596.1 5138997 5142446 D ATPase 5138997..5142446 Mycobacterium smegmatis str. MC2 155 4531832 YP_889295.1 CDS MSMEG_5045 NC_008596.1 5142459 5143814 D identified by match to protein family HMM PF01565; match to protein family HMM PF02913; D-2-hydroxyacid dehydrogenase 5142459..5143814 Mycobacterium smegmatis str. MC2 155 4531168 YP_889296.1 CDS MSMEG_5046 NC_008596.1 5143822 5145528 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; drug transporter complement(5143822..5145528) Mycobacterium smegmatis str. MC2 155 4535233 YP_889297.1 CDS MSMEG_5047 NC_008596.1 5145619 5146872 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710; drug resistance transporter Bcr/CflA subfamily protein complement(5145619..5146872) Mycobacterium smegmatis str. MC2 155 4534351 YP_889298.1 CDS MSMEG_5048 NC_008596.1 5147070 5147831 D hypothetical protein 5147070..5147831 Mycobacterium smegmatis str. MC2 155 4533202 YP_889299.1 CDS kgd NC_008596.1 5147981 5151664 D kgd; produces succinic semialdehyde; part of alternative pathway from alpha-ketoglutarate to succinate; essential for normal growth; alpha-ketoglutarate decarboxylase 5147981..5151664 Mycobacterium smegmatis str. MC2 155 4535402 YP_889300.1 CDS MSMEG_5051 NC_008596.1 5151761 5153071 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator superfamily protein 5151761..5153071 Mycobacterium smegmatis str. MC2 155 4536637 YP_889301.1 CDS map NC_008596.1 5153068 5153832 R identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase complement(5153068..5153832) Mycobacterium smegmatis str. MC2 155 4537151 YP_889302.1 CDS MSMEG_5052 NC_008596.1 5153902 5154162 D identified by match to protein family HMM PF01381; DNA-binding protein 5153902..5154162 Mycobacterium smegmatis str. MC2 155 4532227 YP_889303.1 CDS MSMEG_5053 NC_008596.1 5154241 5155065 D identified by match to protein family HMM PF00106; short chain alcohol dehydrogenase 5154241..5155065 Mycobacterium smegmatis str. MC2 155 4533474 YP_889304.1 CDS MSMEG_5054 NC_008596.1 5155073 5155915 R identified by match to protein family HMM PF04069; ABC transporter substrate-binding protein complement(5155073..5155915) Mycobacterium smegmatis str. MC2 155 4533300 YP_889305.1 CDS MSMEG_5055 NC_008596.1 5155924 5157066 R identified by match to protein family HMM PF00390; match to protein family HMM PF03949; NAD-dependent malic enzyme complement(5155924..5157066) Mycobacterium smegmatis str. MC2 155 4532856 YP_889306.1 CDS corA NC_008596.1 5157213 5158280 D identified by match to protein family HMM PF01544; match to protein family HMM TIGR00383; magnesium and cobalt transporter CorA 5157213..5158280 Mycobacterium smegmatis str. MC2 155 4535879 YP_889307.1 CDS MSMEG_5057 NC_008596.1 5158285 5158890 R hypothetical protein complement(5158285..5158890) Mycobacterium smegmatis str. MC2 155 4533669 YP_889308.1 CDS MSMEG_5058 NC_008596.1 5158887 5160107 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(5158887..5160107) Mycobacterium smegmatis str. MC2 155 4533200 YP_889309.1 CDS MSMEG_5059 NC_008596.1 5160112 5160948 R identified by match to protein family HMM PF00528; ABC transporter permease complement(5160112..5160948) Mycobacterium smegmatis str. MC2 155 4531623 YP_889310.1 CDS MSMEG_5060 NC_008596.1 5160948 5161865 R identified by match to protein family HMM PF00528; ABC transporter permease complement(5160948..5161865) Mycobacterium smegmatis str. MC2 155 4530955 YP_889311.1 CDS MSMEG_5061 NC_008596.1 5161862 5163259 R identified by match to protein family HMM PF01547; extracellular solute-binding protein complement(5161862..5163259) Mycobacterium smegmatis str. MC2 155 4533355 YP_889312.1 CDS MSMEG_5062 NC_008596.1 5163424 5163882 R hypothetical protein complement(5163424..5163882) Mycobacterium smegmatis str. MC2 155 4534209 YP_889313.1 CDS MSMEG_5063 NC_008596.1 5164005 5164454 D integral membrane protein 5164005..5164454 Mycobacterium smegmatis str. MC2 155 4536378 YP_889314.1 CDS MSMEG_5064 NC_008596.1 5164473 5165429 R identified by match to protein family HMM PF03328; malyl-CoA lyase complement(5164473..5165429) Mycobacterium smegmatis str. MC2 155 4532578 YP_889315.1 CDS MSMEG_5065 NC_008596.1 5165455 5166741 D identified by match to protein family HMM PF00571; match to protein family HMM PF03448; Mg/Co/Ni transporter MgtE 5165455..5166741 Mycobacterium smegmatis str. MC2 155 4532048 YP_889316.1 CDS MSMEG_5066 NC_008596.1 5166738 5167286 D identified by match to protein family HMM PF06210; integral membrane protein 5166738..5167286 Mycobacterium smegmatis str. MC2 155 4530844 YP_889317.1 CDS MSMEG_5067 NC_008596.1 5167401 5168702 D hypothetical protein 5167401..5168702 Mycobacterium smegmatis str. MC2 155 4536968 YP_889318.1 CDS MSMEG_5068 NC_008596.1 5168711 5169850 D identified by match to protein family HMM PF01883; Mrp protein 5168711..5169850 Mycobacterium smegmatis str. MC2 155 4536849 YP_889319.1 CDS MSMEG_5069 NC_008596.1 5169857 5170255 R mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase complement(5169857..5170255) Mycobacterium smegmatis str. MC2 155 4533603 YP_889320.1 CDS MSMEG_5070 NC_008596.1 5170258 5171754 R identified by match to protein family HMM PF00089; trypsin complement(5170258..5171754) Mycobacterium smegmatis str. MC2 155 4535055 YP_889321.1 CDS MSMEG_5071 NC_008596.1 5171803 5172201 R hypothetical protein complement(5171803..5172201) Mycobacterium smegmatis str. MC2 155 4532491 YP_889322.1 CDS MSMEG_5072 NC_008596.1 5172290 5173063 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in M. tuberculosis this protein is involved in heat shock, oxidative stress and virulence; RNA polymerase sigma factor SigE complement(5172290..5173063) Mycobacterium smegmatis str. MC2 155 4537435 YP_889323.1 CDS MSMEG_5073 NC_008596.1 5173240 5173872 D identified by match to protein family HMM PF01596; O-methyltransferase, family protein 3 5173240..5173872 Mycobacterium smegmatis str. MC2 155 4532084 YP_889324.1 CDS MSMEG_5074 NC_008596.1 5173964 5174614 D identified by match to protein family HMM PF00440; transcriptional regulatory protein 5173964..5174614 Mycobacterium smegmatis str. MC2 155 4533819 YP_889325.1 CDS MSMEG_5075 NC_008596.1 5174611 5175513 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 5174611..5175513 Mycobacterium smegmatis str. MC2 155 4531848 YP_889326.1 CDS MSMEG_5076 NC_008596.1 5175510 5177072 D ABC transporter 5175510..5177072 Mycobacterium smegmatis str. MC2 155 4531774 YP_889327.1 CDS MSMEG_5077 NC_008596.1 5177093 5177767 D integral membrane protein 5177093..5177767 Mycobacterium smegmatis str. MC2 155 4535361 YP_889328.1 CDS MSMEG_5079 NC_008596.1 5177781 5178398 D hypothetical protein 5177781..5178398 Mycobacterium smegmatis str. MC2 155 4531599 YP_889329.1 CDS glgC NC_008596.1 5178352 5179566 R catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase complement(5178352..5179566) Mycobacterium smegmatis str. MC2 155 4531618 YP_889330.1 CDS MSMEG_5080 NC_008596.1 5179761 5180924 D identified by match to protein family HMM PF00534; match to protein family HMM TIGR02149; glycogen synthase 5179761..5180924 Mycobacterium smegmatis str. MC2 155 4535761 YP_889331.1 CDS MSMEG_5081 NC_008596.1 5180979 5181146 R hypothetical protein complement(5180979..5181146) Mycobacterium smegmatis str. MC2 155 4534173 YP_889332.1 CDS tag NC_008596.1 5181263 5181892 R identified by match to protein family HMM PF03352; match to protein family HMM TIGR00624; DNA-3-methyladenine glycosylase I complement(5181263..5181892) Mycobacterium smegmatis str. MC2 155 4534219 YP_889333.1 CDS MSMEG_5083 NC_008596.1 5181889 5182272 R hypothetical protein complement(5181889..5182272) Mycobacterium smegmatis str. MC2 155 4535269 YP_889334.1 CDS MSMEG_5084 NC_008596.1 5182312 5183223 R identified by match to protein family HMM PF00535; glucosyl-3-phosphoglycerate synthase complement(5182312..5183223) Mycobacterium smegmatis str. MC2 155 4534977 YP_889335.1 CDS folP NC_008596.1 5183268 5184143 R identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase complement(5183268..5184143) Mycobacterium smegmatis str. MC2 155 4534762 YP_889336.1 CDS MSMEG_5086 NC_008596.1 5184162 5185940 R activates fatty acids by binding to coenzyme A; may be involved in acyclic terpene utilization; long-chain-acyl-CoA synthetase complement(5184162..5185940) Mycobacterium smegmatis str. MC2 155 4531288 YP_889337.1 CDS MSMEG_5087 NC_008596.1 5186042 5186626 R identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; hypothetical protein complement(5186042..5186626) Mycobacterium smegmatis str. MC2 155 4532711 YP_889338.1 CDS MSMEG_5088 NC_008596.1 5186695 5188770 D identified by match to protein family HMM PF07721; hypothetical protein 5186695..5188770 Mycobacterium smegmatis str. MC2 155 4537647 YP_889339.1 CDS MSMEG_5089 NC_008596.1 5188843 5191101 D hypothetical protein 5188843..5191101 Mycobacterium smegmatis str. MC2 155 4533124 YP_889340.1 CDS MSMEG_5090 NC_008596.1 5191194 5191916 D hypothetical protein 5191194..5191916 Mycobacterium smegmatis str. MC2 155 4533241 YP_889341.1 CDS MSMEG_5091 NC_008596.1 5192084 5193022 D hypothetical protein 5192084..5193022 Mycobacterium smegmatis str. MC2 155 4532148 YP_889342.1 CDS MSMEG_5092 NC_008596.1 5193071 5193205 D hypothetical protein 5193071..5193205 Mycobacterium smegmatis str. MC2 155 4536958 YP_889343.1 CDS MSMEG_5093 NC_008596.1 5193475 5194176 D identified by similarity to GP:150004; match to protein family HMM PF07929; IS1096, tnpR protein 5193475..5194176 Mycobacterium smegmatis str. MC2 155 4535620 YP_889344.1 CDS MSMEG_5094 NC_008596.1 5194184 5195506 R identified by similarity to GP:150005; match to protein family HMM PF01610; IS1096, tnpA protein complement(5194184..5195506) Mycobacterium smegmatis str. MC2 155 4533026 YP_889345.1 CDS MSMEG_5096 NC_008596.1 5196509 5196844 R identified by similarity to GP:16551202; match to protein family HMM PF01527; ISMsm1, transposase orfA complement(5196509..5196844) Mycobacterium smegmatis str. MC2 155 4531897 YP_889346.1 CDS MSMEG_5097 NC_008596.1 5196939 5197652 D hypothetical protein 5196939..5197652 Mycobacterium smegmatis str. MC2 155 4534805 YP_889347.1 CDS MSMEG_5099 NC_008596.1 5197576 5198595 D hypothetical protein 5197576..5198595 Mycobacterium smegmatis str. MC2 155 4531199 YP_889348.1 CDS MSMEG_5098 NC_008596.1 5198422 5198538 R hypothetical protein complement(5198422..5198538) Mycobacterium smegmatis str. MC2 155 4535213 YP_889349.1 CDS MSMEG_5101 NC_008596.1 5198683 5199513 D hypothetical protein 5198683..5199513 Mycobacterium smegmatis str. MC2 155 4534397 YP_889350.1 CDS MSMEG_5100 NC_008596.1 5199494 5202979 R Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase complement(5199494..5202979) Mycobacterium smegmatis str. MC2 155 4533489 YP_889351.1 CDS MSMEG_5102 NC_008596.1 5203097 5204719 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(5203097..5204719) Mycobacterium smegmatis str. MC2 155 4536214 YP_889352.1 CDS dapE NC_008596.1 5204819 5205886 R catalyzes the formation of succinate and diaminoheptanedioate from succinyldiaminoheptanedioate; succinyl-diaminopimelate desuccinylase complement(5204819..5205886) Mycobacterium smegmatis str. MC2 155 4535246 YP_889353.1 CDS MSMEG_5104 NC_008596.1 5205921 5206865 D tetrahydropicolinate succinylase 5205921..5206865 Mycobacterium smegmatis str. MC2 155 4531456 YP_889354.1 CDS MSMEG_5105 NC_008596.1 5206878 5207339 R hypothetical protein complement(5206878..5207339) Mycobacterium smegmatis str. MC2 155 4530830 YP_889355.1 CDS MSMEG_5106 NC_008596.1 5207358 5209097 R identified by match to protein family HMM PF01844; match to protein family HMM PF02720; HNH endonuclease complement(5207358..5209097) Mycobacterium smegmatis str. MC2 155 4531895 YP_889356.1 CDS MSMEG_5108 NC_008596.1 5209320 5209718 D hypothetical protein 5209320..5209718 Mycobacterium smegmatis str. MC2 155 4531694 YP_889357.1 CDS MSMEG_5107 NC_008596.1 5209709 5210374 R hypothetical protein complement(5209709..5210374) Mycobacterium smegmatis str. MC2 155 4534939 YP_889358.1 CDS MSMEG_5109 NC_008596.1 5210371 5211210 R hypothetical protein complement(5210371..5211210) Mycobacterium smegmatis str. MC2 155 4537241 YP_889359.1 CDS MSMEG_5111 NC_008596.1 5212083 5212454 D hypothetical protein 5212083..5212454 Mycobacterium smegmatis str. MC2 155 4536346 YP_889360.1 CDS MSMEG_5112 NC_008596.1 5212470 5212793 D hypothetical protein 5212470..5212793 Mycobacterium smegmatis str. MC2 155 4533500 YP_889361.1 CDS MSMEG_5115 NC_008596.1 5212766 5213179 D hypothetical protein 5212766..5213179 Mycobacterium smegmatis str. MC2 155 4537327 YP_889362.1 CDS MSMEG_5114 NC_008596.1 5213151 5214557 R activates fatty acids by binding to coenzyme A; acyl-CoA synthetase complement(5213151..5214557) Mycobacterium smegmatis str. MC2 155 4535314 YP_889363.1 CDS MSMEG_5116 NC_008596.1 5214644 5215138 D identified by match to protein family HMM PF03745; hypothetical protein 5214644..5215138 Mycobacterium smegmatis str. MC2 155 4534882 YP_889364.1 CDS MSMEG_5118 NC_008596.1 5215146 5215685 D identified by match to protein family HMM PF00293; nudix hydrolase 5215146..5215685 Mycobacterium smegmatis str. MC2 155 4533160 YP_889365.1 CDS MSMEG_5117 NC_008596.1 5215682 5216635 R identified by match to protein family HMM PF01619; proline dehydrogenase complement(5215682..5216635) Mycobacterium smegmatis str. MC2 155 4535972 YP_889366.1 CDS pruA NC_008596.1 5216637 5218265 R identified by match to protein family HMM PF00171; match to protein family HMM TIGR01236; 1-pyrroline-5-carboxylate dehydrogenase complement(5216637..5218265) Mycobacterium smegmatis str. MC2 155 4534098 YP_889367.1 CDS MSMEG_5120 NC_008596.1 5218349 5219926 D hypothetical protein 5218349..5219926 Mycobacterium smegmatis str. MC2 155 4536390 YP_889368.1 CDS MSMEG_5121 NC_008596.1 5219928 5221031 R catalyzes the formation of N-succinyl-LL-2,6-diaminopimelate from N-succinyl-L-2-amino-6-oxopimelate in lysine biosynthesis; N-succinyldiaminopimelate aminotransferase complement(5219928..5221031) Mycobacterium smegmatis str. MC2 155 4534676 YP_889369.1 CDS MSMEG_5122 NC_008596.1 5221049 5221372 R identified by match to protein family HMM PF00037; ferredoxin complement(5221049..5221372) Mycobacterium smegmatis str. MC2 155 4537117 YP_889370.1 CDS MSMEG_5124 NC_008596.1 5222843 5224858 D identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF03486; match to protein family HMM PF07992; 2,4-dienoyl-CoA reductase 5222843..5224858 Mycobacterium smegmatis str. MC2 155 4536463 YP_889371.1 CDS MSMEG_5125 NC_008596.1 5224977 5225525 R identified by match to protein family HMM PF04264; hypothetical protein complement(5224977..5225525) Mycobacterium smegmatis str. MC2 155 4536771 YP_889372.1 CDS fbiC NC_008596.1 5225815 5228439 R 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase; catalyzes radical-mediated transfer of hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione to form 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO); functions in F420 biosynthesis; FO synthase complement(5225815..5228439) Mycobacterium smegmatis str. MC2 155 4534460 YP_889373.1 CDS MSMEG_5127 NC_008596.1 5228643 5229797 D hypothetical protein 5228643..5229797 Mycobacterium smegmatis str. MC2 155 4535268 YP_889374.1 CDS MSMEG_5128 NC_008596.1 5229798 5230202 R hypothetical protein complement(5229798..5230202) Mycobacterium smegmatis str. MC2 155 4532436 YP_889375.1 CDS MSMEG_5129 NC_008596.1 5230310 5231182 R identified by match to protein family HMM PF02585; N-acetyl-1-D-myo-Inosityl-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase MshB complement(5230310..5231182) Mycobacterium smegmatis str. MC2 155 4535725 YP_889376.1 CDS MSMEG_5130 NC_008596.1 5231207 5233090 R identified by match to protein family HMM PF00496; extracellular solute-binding protein complement(5231207..5233090) Mycobacterium smegmatis str. MC2 155 4534966 YP_889377.1 CDS MSMEG_5131 NC_008596.1 5233598 5234785 D hypothetical protein 5233598..5234785 Mycobacterium smegmatis str. MC2 155 4536581 YP_889378.1 CDS typA NC_008596.1 5234873 5236774 R identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA complement(5234873..5236774) Mycobacterium smegmatis str. MC2 155 4535175 YP_889379.1 CDS MSMEG_5133 NC_008596.1 5236721 5236834 D hypothetical protein 5236721..5236834 Mycobacterium smegmatis str. MC2 155 4532357 YP_889380.1 CDS MSMEG_5134 NC_008596.1 5236831 5236998 D hypothetical protein 5236831..5236998 Mycobacterium smegmatis str. MC2 155 4537287 YP_889381.1 CDS MSMEG_5135 NC_008596.1 5237084 5237347 D hypothetical protein 5237084..5237347 Mycobacterium smegmatis str. MC2 155 4537004 YP_889382.1 CDS MSMEG_5136 NC_008596.1 5237353 5237805 R identified by match to protein family HMM PF01243; hypothetical protein complement(5237353..5237805) Mycobacterium smegmatis str. MC2 155 4533170 YP_889383.1 CDS narI NC_008596.1 5237887 5238618 R identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351; respiratory nitrate reductase subunit gamma complement(5237887..5238618) Mycobacterium smegmatis str. MC2 155 4531522 YP_889384.1 CDS narJ NC_008596.1 5238618 5239256 R identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684; nitrate reductase molybdenum cofactor assembly chaperone complement(5238618..5239256) Mycobacterium smegmatis str. MC2 155 4537713 YP_889385.1 CDS narH NC_008596.1 5239253 5240899 R identified by match to protein family HMM TIGR01660; nitrate reductase subunit beta complement(5239253..5240899) Mycobacterium smegmatis str. MC2 155 4535587 YP_889386.1 CDS MSMEG_5140 NC_008596.1 5240896 5244570 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580; nitrate reductase subunit alpha complement(5240896..5244570) Mycobacterium smegmatis str. MC2 155 4532273 YP_889387.1 CDS MSMEG_5141 NC_008596.1 5244596 5245825 R identified by match to protein family HMM PF07690; nitrate/nitrite transporter complement(5244596..5245825) Mycobacterium smegmatis str. MC2 155 4537308 YP_889388.1 CDS MSMEG_5142 NC_008596.1 5245838 5247265 R identified by match to protein family HMM PF00232; beta-glucosidase A complement(5245838..5247265) Mycobacterium smegmatis str. MC2 155 4532563 YP_889389.1 CDS MSMEG_5143 NC_008596.1 5247286 5248347 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; HTH-type transcriptional regulator DegA complement(5247286..5248347) Mycobacterium smegmatis str. MC2 155 4532702 YP_889390.1 CDS MSMEG_5144 NC_008596.1 5248344 5250791 R identified by match to protein family HMM PF00933; match to protein family HMM PF01915; xylosidase/arabinosidase complement(5248344..5250791) Mycobacterium smegmatis str. MC2 155 4532377 YP_889391.1 CDS MSMEG_5145 NC_008596.1 5251100 5252485 D identified by match to protein family HMM PF01547; extracellular solute-binding protein 5251100..5252485 Mycobacterium smegmatis str. MC2 155 4534994 YP_889392.1 CDS MSMEG_5146 NC_008596.1 5252482 5253402 D identified by match to protein family HMM PF00528; binding protein dependent transporter 5252482..5253402 Mycobacterium smegmatis str. MC2 155 4531154 YP_889393.1 CDS MSMEG_5147 NC_008596.1 5253404 5254303 D identified by match to protein family HMM PF00528; sugar ABC transporter transmembrane protein 5253404..5254303 Mycobacterium smegmatis str. MC2 155 4531800 YP_889394.1 CDS MSMEG_5148 NC_008596.1 5254309 5254701 R identified by match to protein family HMM PF00293; CTP pyrophosphohydrolase complement(5254309..5254701) Mycobacterium smegmatis str. MC2 155 4532799 YP_889395.1 CDS phhB NC_008596.1 5254729 5255013 D 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 5254729..5255013 Mycobacterium smegmatis str. MC2 155 4531636 YP_889396.1 CDS pimE NC_008596.1 5254991 5256124 R involved in the fifth mannose transfer of phosphatidylinositol mannoside synthesis; mannosyltransferase complement(5254991..5256124) Mycobacterium smegmatis str. MC2 155 4530975 YP_889397.1 CDS MSMEG_5152 NC_008596.1 5256259 5256948 D hypothetical protein 5256259..5256948 Mycobacterium smegmatis str. MC2 155 4534359 YP_889398.1 CDS MSMEG_5151 NC_008596.1 5256323 5256931 D hypothetical protein 5256323..5256931 Mycobacterium smegmatis str. MC2 155 4534862 YP_889399.1 CDS MSMEG_5153 NC_008596.1 5256973 5257956 D hypothetical protein 5256973..5257956 Mycobacterium smegmatis str. MC2 155 4536339 YP_889400.1 CDS MSMEG_5154 NC_008596.1 5258052 5258201 R hypothetical protein complement(5258052..5258201) Mycobacterium smegmatis str. MC2 155 4533781 YP_889401.1 CDS MSMEG_5155 NC_008596.1 5258247 5258900 D identified by match to protein family HMM PF00881; nitroreductase 5258247..5258900 Mycobacterium smegmatis str. MC2 155 4534365 YP_889402.1 CDS MSMEG_5156 NC_008596.1 5258919 5259500 R identified by match to protein family HMM PF00730; base excision DNA repair protein, HhH-GPD family protein complement(5258919..5259500) Mycobacterium smegmatis str. MC2 155 4537698 YP_889403.1 CDS MSMEG_5157 NC_008596.1 5259594 5259890 D hypothetical protein 5259594..5259890 Mycobacterium smegmatis str. MC2 155 4530822 YP_889404.1 CDS MSMEG_5158 NC_008596.1 5259912 5261111 D identified by similarity to GB:AAB48182.1; match to protein family HMM PF02518; match to protein family HMM PF06580; sensor histidine kinase 5259912..5261111 Mycobacterium smegmatis str. MC2 155 4531828 YP_889405.1 CDS MSMEG_5159 NC_008596.1 5261108 5261893 D identified by match to protein family HMM PF00072; match to protein family HMM PF04397; DNA-binding response regulator 5261108..5261893 Mycobacterium smegmatis str. MC2 155 4535267 YP_889406.1 CDS MSMEG_5160 NC_008596.1 5261949 5262260 D integral membrane protein 5261949..5262260 Mycobacterium smegmatis str. MC2 155 4532341 YP_889407.1 CDS MSMEG_5161 NC_008596.1 5262257 5263999 D identified by match to protein family HMM PF00474; transmembrane transporter 5262257..5263999 Mycobacterium smegmatis str. MC2 155 4535618 YP_889408.1 CDS MSMEG_5162 NC_008596.1 5264003 5264395 R identified by match to protein family HMM PF01638; cinnamoyl ester hydrolase complement(5264003..5264395) Mycobacterium smegmatis str. MC2 155 4532683 YP_889409.1 CDS MSMEG_5163 NC_008596.1 5264488 5265240 D identified by match to protein family HMM PF04069; glycine/betaine ABC transporter periplasmic protein 5264488..5265240 Mycobacterium smegmatis str. MC2 155 4531942 YP_889410.1 CDS MSMEG_5164 NC_008596.1 5265330 5266328 D identified by match to protein family HMM PF00107; match to protein family HMM TIGR02817; zinc-binding alcohol dehydrogenase 5265330..5266328 Mycobacterium smegmatis str. MC2 155 4532065 YP_889411.1 CDS MSMEG_5165 NC_008596.1 5266487 5266834 D identified by match to protein family HMM PF04341; integral membrane protein 5266487..5266834 Mycobacterium smegmatis str. MC2 155 4535241 YP_889412.1 CDS MSMEG_5166 NC_008596.1 5266831 5268462 D identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; Na+/solute symporter 5266831..5268462 Mycobacterium smegmatis str. MC2 155 4534667 YP_889413.1 CDS MSMEG_5167 NC_008596.1 5268527 5269732 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator superfamily protein 5268527..5269732 Mycobacterium smegmatis str. MC2 155 4537146 YP_889414.1 CDS MSMEG_5168 NC_008596.1 5269784 5271097 D hypothetical protein 5269784..5271097 Mycobacterium smegmatis str. MC2 155 4533983 YP_889415.1 CDS MSMEG_5169 NC_008596.1 5271099 5271269 R hypothetical protein complement(5271099..5271269) Mycobacterium smegmatis str. MC2 155 4534106 YP_889416.1 CDS MSMEG_5170 NC_008596.1 5271288 5271731 R identified by match to protein family HMM PF01243; pyridoxamine 5'-phosphate oxidase complement(5271288..5271731) Mycobacterium smegmatis str. MC2 155 4533663 YP_889417.1 CDS MSMEG_5171 NC_008596.1 5271798 5272811 D hypothetical protein 5271798..5272811 Mycobacterium smegmatis str. MC2 155 4534124 YP_889418.1 CDS MSMEG_5172 NC_008596.1 5272831 5273346 D identified by match to protein family HMM PF08002; hypothetical protein 5272831..5273346 Mycobacterium smegmatis str. MC2 155 4534502 YP_889419.1 CDS MSMEG_5173 NC_008596.1 5273370 5274206 D identified by match to protein family HMM PF02409; O-methyltransferase 5273370..5274206 Mycobacterium smegmatis str. MC2 155 4535628 YP_889420.1 CDS MSMEG_5174 NC_008596.1 5274219 5274575 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(5274219..5274575) Mycobacterium smegmatis str. MC2 155 4535610 YP_889421.1 CDS MSMEG_5175 NC_008596.1 5274659 5275381 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 5274659..5275381 Mycobacterium smegmatis str. MC2 155 4534926 YP_889422.1 CDS MSMEG_5176 NC_008596.1 5275385 5276035 R methyltransferase type 11 complement(5275385..5276035) Mycobacterium smegmatis str. MC2 155 4536277 YP_889423.1 CDS MSMEG_5177 NC_008596.1 5276022 5276741 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(5276022..5276741) Mycobacterium smegmatis str. MC2 155 4537462 YP_889424.1 CDS MSMEG_5178 NC_008596.1 5276743 5279016 R integral membrane protein complement(5276743..5279016) Mycobacterium smegmatis str. MC2 155 4533786 YP_889425.1 CDS MSMEG_5179 NC_008596.1 5279234 5279794 D identified by match to protein family HMM PF07681; DoxX subfamily protein 5279234..5279794 Mycobacterium smegmatis str. MC2 155 4532381 YP_889426.1 CDS MSMEG_5180 NC_008596.1 5279899 5280030 D hypothetical protein 5279899..5280030 Mycobacterium smegmatis str. MC2 155 4534664 YP_889427.1 CDS MSMEG_5181 NC_008596.1 5280066 5281532 R identified by similarity to GP:2935133; match to protein family HMM PF01609; IS1549, transposase complement(5280066..5281532) Mycobacterium smegmatis str. MC2 155 4532003 YP_889428.1 CDS MSMEG_5182 NC_008596.1 5281804 5282817 R identified by match to protein family HMM PF03060; 2-nitropropane dioxygenase complement(5281804..5282817) Mycobacterium smegmatis str. MC2 155 4536531 YP_889429.1 CDS MSMEG_5183 NC_008596.1 5282834 5283595 R identified by match to protein family HMM PF00106; 3-hydroxyacyl-CoA dehydrogenase complement(5282834..5283595) Mycobacterium smegmatis str. MC2 155 4531389 YP_889430.1 CDS MSMEG_5184 NC_008596.1 5283647 5284738 R identified by match to protein family HMM PF02515; alpha-methylacyl-CoA racemase complement(5283647..5284738) Mycobacterium smegmatis str. MC2 155 4537733 YP_889431.1 CDS MSMEG_5185 NC_008596.1 5284871 5285698 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 5284871..5285698 Mycobacterium smegmatis str. MC2 155 4531303 YP_889432.1 CDS MSMEG_5186 NC_008596.1 5285867 5286256 R identified by match to protein family HMM PF05534; HicB family protein complement(5285867..5286256) Mycobacterium smegmatis str. MC2 155 4537613 YP_889433.1 CDS MSMEG_5187 NC_008596.1 5286339 5287598 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00900; tetracycline-resistance determinant TetV 5286339..5287598 Mycobacterium smegmatis str. MC2 155 4532468 YP_889434.1 CDS MSMEG_5188 NC_008596.1 5287602 5288285 R identified by match to protein family HMM PF02517; caax amino protease complement(5287602..5288285) Mycobacterium smegmatis str. MC2 155 4536036 YP_889435.1 CDS MSMEG_5189 NC_008596.1 5288282 5289418 R identified by match to protein family HMM PF01370; match to protein family HMM PF05368; oxidoreductase complement(5288282..5289418) Mycobacterium smegmatis str. MC2 155 4536377 YP_889436.1 CDS MSMEG_5190 NC_008596.1 5289428 5290024 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(5289428..5290024) Mycobacterium smegmatis str. MC2 155 4533878 YP_889437.1 CDS MSMEG_5192 NC_008596.1 5290103 5291140 D identified by match to protein family HMM PF00248; aldo/keto reductase 5290103..5291140 Mycobacterium smegmatis str. MC2 155 4532150 YP_889438.1 CDS MSMEG_5191 NC_008596.1 5291112 5291633 R identified by match to protein family HMM PF00132; siderophore binding protein complement(5291112..5291633) Mycobacterium smegmatis str. MC2 155 4534349 YP_889439.1 CDS MSMEG_5193 NC_008596.1 5291664 5292626 R identified by match to protein family HMM PF00165; match to protein family HMM PF01965; AraC family transcriptional regulator complement(5291664..5292626) Mycobacterium smegmatis str. MC2 155 4530885 YP_889440.1 CDS MSMEG_5194 NC_008596.1 5292709 5294022 D identified by match to protein family HMM PF07690; integral membrane protein 5292709..5294022 Mycobacterium smegmatis str. MC2 155 4533730 YP_889441.1 CDS MSMEG_5195 NC_008596.1 5294026 5294169 R hypothetical protein complement(5294026..5294169) Mycobacterium smegmatis str. MC2 155 4535432 YP_889442.1 CDS MSMEG_5196 NC_008596.1 5294168 5294923 D identified by match to protein family HMM PF02469; fasciclin domain-containing protein 5294168..5294923 Mycobacterium smegmatis str. MC2 155 4534221 YP_889443.1 CDS MSMEG_5197 NC_008596.1 5294997 5296139 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; long-chain specific acyl-CoA dehydrogenase complement(5294997..5296139) Mycobacterium smegmatis str. MC2 155 4535848 YP_889444.1 CDS MSMEG_5198 NC_008596.1 5296145 5296939 R identified by match to protein family HMM PF00378; carnitinyl-CoA dehydratase complement(5296145..5296939) Mycobacterium smegmatis str. MC2 155 4531544 YP_889445.1 CDS MSMEG_5199 NC_008596.1 5296936 5298093 R identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acyl-CoA dehydrogenase complement(5296936..5298093) Mycobacterium smegmatis str. MC2 155 4537152 YP_889446.1 CDS MSMEG_5201 NC_008596.1 5298285 5299076 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 5298285..5299076 Mycobacterium smegmatis str. MC2 155 4533373 YP_889447.1 CDS MSMEG_5200 NC_008596.1 5299073 5299366 R hypothetical protein complement(5299073..5299366) Mycobacterium smegmatis str. MC2 155 4536995 YP_889448.1 CDS MSMEG_5202 NC_008596.1 5299440 5301194 R hypothetical protein complement(5299440..5301194) Mycobacterium smegmatis str. MC2 155 4532899 YP_889449.1 CDS MSMEG_5203 NC_008596.1 5301228 5301752 R identified by match to protein family HMM PF07681; DoxX subfamily protein complement(5301228..5301752) Mycobacterium smegmatis str. MC2 155 4536154 YP_889450.1 CDS MSMEG_5204 NC_008596.1 5301775 5302539 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF07993; oxidoreductase, short chain dehydrogenase/reductase complement(5301775..5302539) Mycobacterium smegmatis str. MC2 155 4534891 YP_889451.1 CDS MSMEG_5206 NC_008596.1 5302564 5303166 D identified by match to protein family HMM PF00440; regulatory protein 5302564..5303166 Mycobacterium smegmatis str. MC2 155 4536141 YP_889452.1 CDS MSMEG_5205 NC_008596.1 5303163 5304428 R hypothetical protein complement(5303163..5304428) Mycobacterium smegmatis str. MC2 155 4532143 YP_889453.1 CDS MSMEG_5207 NC_008596.1 5304455 5305150 R hypothetical protein complement(5304455..5305150) Mycobacterium smegmatis str. MC2 155 4536589 YP_889454.1 CDS MSMEG_5208 NC_008596.1 5305147 5305725 R hypothetical protein complement(5305147..5305725) Mycobacterium smegmatis str. MC2 155 4532574 YP_889455.1 CDS MSMEG_5209 NC_008596.1 5305945 5306808 D identified by match to protein family HMM PF00561; alpha/beta hydrolase 5305945..5306808 Mycobacterium smegmatis str. MC2 155 4533613 YP_889456.1 CDS MSMEG_5211 NC_008596.1 5306805 5309738 D identified by match to protein family HMM PF00202; match to protein family HMM PF01636; hypothetical protein 5306805..5309738 Mycobacterium smegmatis str. MC2 155 4531172 YP_889457.1 CDS MSMEG_5210 NC_008596.1 5309722 5310480 R identified by match to protein family HMM PF00561; hydrolase complement(5309722..5310480) Mycobacterium smegmatis str. MC2 155 4535265 YP_889458.1 CDS MSMEG_5212 NC_008596.1 5310644 5310811 R hypothetical protein complement(5310644..5310811) Mycobacterium smegmatis str. MC2 155 4534137 YP_889459.1 CDS MSMEG_5213 NC_008596.1 5310853 5311533 D hypothetical protein 5310853..5311533 Mycobacterium smegmatis str. MC2 155 4533930 YP_889460.1 CDS MSMEG_5214 NC_008596.1 5311646 5312170 D identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; RNA polymerase sigma-70 factor 5311646..5312170 Mycobacterium smegmatis str. MC2 155 4533638 YP_889461.1 CDS MSMEG_5215 NC_008596.1 5312196 5312690 D identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026; hypothetical protein 5312196..5312690 Mycobacterium smegmatis str. MC2 155 4534187 YP_889462.1 CDS MSMEG_5216 NC_008596.1 5312778 5313185 R identified by match to protein family HMM PF00903; glyoxalase complement(5312778..5313185) Mycobacterium smegmatis str. MC2 155 4535085 YP_889463.1 CDS MSMEG_5217 NC_008596.1 5313276 5313614 R hypothetical protein complement(5313276..5313614) Mycobacterium smegmatis str. MC2 155 4531304 YP_889464.1 CDS MSMEG_5218 NC_008596.1 5313647 5314048 R identified by match to protein family HMM PF07366; hypothetical protein complement(5313647..5314048) Mycobacterium smegmatis str. MC2 155 4533966 YP_889465.1 CDS MSMEG_5219 NC_008596.1 5314122 5314679 R identified by match to protein family HMM PF01872; riboflavin biosynthesis protein RibD domain-containing protein complement(5314122..5314679) Mycobacterium smegmatis str. MC2 155 4536184 YP_889466.1 CDS MSMEG_5220 NC_008596.1 5314772 5315719 R identified by match to protein family HMM PF07859; esterase/lipase/thioesterase complement(5314772..5315719) Mycobacterium smegmatis str. MC2 155 4535299 YP_889467.1 CDS MSMEG_5221 NC_008596.1 5315767 5316321 R identified by match to protein family HMM PF00583; N-acetyltransferase GCN5 complement(5315767..5316321) Mycobacterium smegmatis str. MC2 155 4535966 YP_889468.1 CDS ychF NC_008596.1 5316318 5317424 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(5316318..5317424) Mycobacterium smegmatis str. MC2 155 4534022 YP_889469.1 CDS MSMEG_5223 NC_008596.1 5317578 5318684 D hypothetical protein 5317578..5318684 Mycobacterium smegmatis str. MC2 155 4532941 YP_889470.1 CDS ispH NC_008596.1 5318699 5319643 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(5318699..5319643) Mycobacterium smegmatis str. MC2 155 4530979 YP_889471.1 CDS MSMEG_5225 NC_008596.1 5319766 5320383 D hypothetical protein 5319766..5320383 Mycobacterium smegmatis str. MC2 155 4532054 YP_889472.1 CDS xseA NC_008596.1 5320419 5321633 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 5320419..5321633 Mycobacterium smegmatis str. MC2 155 4536211 YP_889473.1 CDS xseB NC_008596.1 5321630 5321842 D identified by match to protein family HMM PF02609; match to protein family HMM TIGR01280; exodeoxyribonuclease VII small subunit 5321630..5321842 Mycobacterium smegmatis str. MC2 155 4535200 YP_889474.1 CDS MSMEG_5228 NC_008596.1 5321905 5322975 D identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; 3-beta hydroxysteroid dehydrogenase/isomerase 5321905..5322975 Mycobacterium smegmatis str. MC2 155 4532277 YP_889475.1 CDS MSMEG_5229 NC_008596.1 5322977 5323501 R hypothetical protein complement(5322977..5323501) Mycobacterium smegmatis str. MC2 155 4535437 YP_889476.1 CDS MSMEG_5230 NC_008596.1 5323505 5323840 R hypothetical protein complement(5323505..5323840) Mycobacterium smegmatis str. MC2 155 4536833 YP_889477.1 CDS MSMEG_5231 NC_008596.1 5323876 5324085 R hypothetical protein complement(5323876..5324085) Mycobacterium smegmatis str. MC2 155 4533524 YP_889478.1 CDS MSMEG_5232 NC_008596.1 5324361 5324507 R hypothetical protein complement(5324361..5324507) Mycobacterium smegmatis str. MC2 155 4532595 YP_889479.1 CDS MSMEG_5233 NC_008596.1 5324552 5325631 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; RmlD substrate binding domain-containing protein 5324552..5325631 Mycobacterium smegmatis str. MC2 155 4533061 YP_889480.1 CDS MSMEG_5234 NC_008596.1 5325628 5326398 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short-chain dehydrogenase/reductase SDR 5325628..5326398 Mycobacterium smegmatis str. MC2 155 4533353 YP_889481.1 CDS MSMEG_5235 NC_008596.1 5326395 5327228 D identified by match to protein family HMM PF00106; short chain dehydrogenase 5326395..5327228 Mycobacterium smegmatis str. MC2 155 4533326 YP_889482.1 CDS MSMEG_5237 NC_008596.1 5327291 5328478 D identified by match to protein family HMM PF01594; hypothetical protein 5327291..5328478 Mycobacterium smegmatis str. MC2 155 4534255 YP_889483.1 CDS MSMEG_5236 NC_008596.1 5328456 5329280 R identified by match to protein family HMM PF01738; dienelactone hydrolase complement(5328456..5329280) Mycobacterium smegmatis str. MC2 155 4537184 YP_889484.1 CDS MSMEG_5238 NC_008596.1 5329295 5329918 R hypothetical protein complement(5329295..5329918) Mycobacterium smegmatis str. MC2 155 4534769 YP_889485.1 CDS glpX NC_008596.1 5329974 5331002 D type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 5329974..5331002 Mycobacterium smegmatis str. MC2 155 4532213 YP_889486.1 CDS fumC NC_008596.1 5331034 5332440 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 5331034..5332440 Mycobacterium smegmatis str. MC2 155 4532307 YP_889487.1 CDS MSMEG_5241 NC_008596.1 5332463 5334178 R identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730; GAF family protein complement(5332463..5334178) Mycobacterium smegmatis str. MC2 155 4535585 YP_889488.1 CDS MSMEG_5242 NC_008596.1 5334246 5335652 R identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946; acyltransferase complement(5334246..5335652) Mycobacterium smegmatis str. MC2 155 4534997 YP_889489.1 CDS MSMEG_5243 NC_008596.1 5335649 5336092 R hypothetical protein complement(5335649..5336092) Mycobacterium smegmatis str. MC2 155 4534307 YP_889490.1 CDS MSMEG_5244 NC_008596.1 5336164 5336799 R identified by match to protein family HMM PF00072; match to protein family HMM PF00196; DevR family transcriptional regulator complement(5336164..5336799) Mycobacterium smegmatis str. MC2 155 4535692 YP_889491.1 CDS MSMEG_5245 NC_008596.1 5336810 5337652 R identified by match to protein family HMM PF00582; universal stress protein family protein complement(5336810..5337652) Mycobacterium smegmatis str. MC2 155 4537123 YP_889492.1 CDS MSMEG_5246 NC_008596.1 5337654 5338643 R hypothetical protein complement(5337654..5338643) Mycobacterium smegmatis str. MC2 155 4532679 YP_889493.1 CDS MSMEG_5247 NC_008596.1 5338763 5340076 R identified by match to protein family HMM PF02562; PhoH family protein complement(5338763..5340076) Mycobacterium smegmatis str. MC2 155 4535132 YP_889494.1 CDS MSMEG_5248 NC_008596.1 5340381 5341208 R identified by match to protein family HMM PF03405; acyl-[ACP] desaturase complement(5340381..5341208) Mycobacterium smegmatis str. MC2 155 4532334 YP_889495.1 CDS glyA NC_008596.1 5341287 5342759 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(5341287..5342759) Mycobacterium smegmatis str. MC2 155 4534074 YP_889496.1 CDS MSMEG_5250 NC_008596.1 5342839 5344104 R CalR9 protein complement(5342839..5344104) Mycobacterium smegmatis str. MC2 155 4534748 YP_889497.1 CDS coaA NC_008596.1 5344147 5345085 D catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 5344147..5345085 Mycobacterium smegmatis str. MC2 155 4535434 YP_889498.1 CDS MSMEG_5251 NC_008596.1 5345057 5346574 R hypothetical protein complement(5345057..5346574) Mycobacterium smegmatis str. MC2 155 4531383 YP_889499.1 CDS MSMEG_5253 NC_008596.1 5346674 5347081 R hypothetical protein complement(5346674..5347081) Mycobacterium smegmatis str. MC2 155 4536611 YP_889500.1 CDS MSMEG_5254 NC_008596.1 5347134 5347541 R hypothetical protein complement(5347134..5347541) Mycobacterium smegmatis str. MC2 155 4531823 YP_889501.1 CDS MSMEG_5255 NC_008596.1 5347702 5349066 R hypothetical protein complement(5347702..5349066) Mycobacterium smegmatis str. MC2 155 4537604 YP_889502.1 CDS uppS NC_008596.1 5349086 5349877 R identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055; UDP diphosphate synthase complement(5349086..5349877) Mycobacterium smegmatis str. MC2 155 4532700 YP_889503.1 CDS MSMEG_5257 NC_008596.1 5349936 5350706 D identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin III family channel protein 5349936..5350706 Mycobacterium smegmatis str. MC2 155 4532673 YP_889504.1 CDS MSMEG_5258 NC_008596.1 5350825 5351199 R identified by match to protein family HMM PF02136; steroid delta-isomerase complement(5350825..5351199) Mycobacterium smegmatis str. MC2 155 4536389 YP_889505.1 CDS MSMEG_5259 NC_008596.1 5351211 5353184 R identified by match to protein family HMM PF03190; hypothetical protein complement(5351211..5353184) Mycobacterium smegmatis str. MC2 155 4534747 YP_889506.1 CDS MSMEG_5260 NC_008596.1 5353204 5353482 R hypothetical protein complement(5353204..5353482) Mycobacterium smegmatis str. MC2 155 4537321 YP_889507.1 CDS MSMEG_5261 NC_008596.1 5353479 5354345 R identified by match to protein family HMM PF02585; mycothiol conjugate amidase Mca complement(5353479..5354345) Mycobacterium smegmatis str. MC2 155 4531344 YP_889508.1 CDS MSMEG_5262 NC_008596.1 5354473 5354901 D hypothetical protein 5354473..5354901 Mycobacterium smegmatis str. MC2 155 4534806 YP_889509.1 CDS greA NC_008596.1 5355102 5355596 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 5355102..5355596 Mycobacterium smegmatis str. MC2 155 4535793 YP_889510.1 CDS MSMEG_5264 NC_008596.1 5355634 5356314 D hypothetical protein 5355634..5356314 Mycobacterium smegmatis str. MC2 155 4533205 YP_889511.1 CDS MSMEG_5265 NC_008596.1 5356323 5357477 R catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase complement(5356323..5357477) Mycobacterium smegmatis str. MC2 155 4532874 YP_889512.1 CDS MSMEG_5267 NC_008596.1 5357517 5358707 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; glutaryl-CoA dehydrogenase 5357517..5358707 Mycobacterium smegmatis str. MC2 155 4533982 YP_889513.1 CDS MSMEG_5266 NC_008596.1 5358691 5359428 R identified by match to protein family HMM PF06271; RDD family protein complement(5358691..5359428) Mycobacterium smegmatis str. MC2 155 4535953 YP_889514.1 CDS MSMEG_5268 NC_008596.1 5359516 5360649 R hypothetical protein complement(5359516..5360649) Mycobacterium smegmatis str. MC2 155 4533699 YP_889515.1 CDS MSMEG_5269 NC_008596.1 5360191 5360676 D hypothetical protein 5360191..5360676 Mycobacterium smegmatis str. MC2 155 4532527 YP_889516.1 CDS MSMEG_5270 NC_008596.1 5360957 5362348 R identified by match to protein family HMM PF00291; match to protein family HMM PF00571; match to protein family HMM TIGR01137; cystathionine beta-synthase complement(5360957..5362348) Mycobacterium smegmatis str. MC2 155 4532297 YP_889517.1 CDS MSMEG_5271 NC_008596.1 5362378 5363424 R identified by match to protein family HMM PF07859; esterase complement(5362378..5363424) Mycobacterium smegmatis str. MC2 155 4534118 YP_889518.1 CDS MSMEG_5272 NC_008596.1 5363628 5364581 D identified by match to protein family HMM PF00657; hypothetical protein 5363628..5364581 Mycobacterium smegmatis str. MC2 155 4534649 YP_889519.1 CDS MSMEG_5273 NC_008596.1 5364613 5365830 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 5364613..5365830 Mycobacterium smegmatis str. MC2 155 4535526 YP_889520.1 CDS purT NC_008596.1 5365924 5367126 D non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 5365924..5367126 Mycobacterium smegmatis str. MC2 155 4531280 YP_889521.1 CDS MSMEG_5275 NC_008596.1 5367202 5368038 R identified by match to protein family HMM PF06539; permease of the major facilitator superfamily protein complement(5367202..5368038) Mycobacterium smegmatis str. MC2 155 4536788 YP_889522.1 CDS MSMEG_5276 NC_008596.1 5368214 5369260 D catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA; 3-hydroxyisobutyryl-CoA hydrolase 5368214..5369260 Mycobacterium smegmatis str. MC2 155 4535964 YP_889523.1 CDS MSMEG_5277 NC_008596.1 5369260 5370036 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 5369260..5370036 Mycobacterium smegmatis str. MC2 155 4537709 YP_889524.1 CDS MSMEG_5278 NC_008596.1 5370047 5371777 D transmembrane protein 5370047..5371777 Mycobacterium smegmatis str. MC2 155 4532878 YP_889525.1 CDS MSMEG_5279 NC_008596.1 5371788 5372156 R hypothetical protein complement(5371788..5372156) Mycobacterium smegmatis str. MC2 155 4537500 YP_889526.1 CDS MSMEG_5280 NC_008596.1 5372158 5372706 R identified by match to protein family HMM PF05995; cysteine dioxygenase type I complement(5372158..5372706) Mycobacterium smegmatis str. MC2 155 4532615 YP_889527.1 CDS MSMEG_5281 NC_008596.1 5372831 5373301 D LpqV protein 5372831..5373301 Mycobacterium smegmatis str. MC2 155 4530978 YP_889528.1 CDS MSMEG_5282 NC_008596.1 5373318 5373962 R identified by match to protein family HMM PF00440; transcriptional regulator complement(5373318..5373962) Mycobacterium smegmatis str. MC2 155 4535518 YP_889529.1 CDS MSMEG_5283 NC_008596.1 5374065 5375750 D identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976; hydrolase, CocE/NonD family protein 5374065..5375750 Mycobacterium smegmatis str. MC2 155 4530917 YP_889530.1 CDS MSMEG_5284 NC_008596.1 5375747 5376769 D identified by match to protein family HMM PF01734; patatin 5375747..5376769 Mycobacterium smegmatis str. MC2 155 4533455 YP_889531.1 CDS MSMEG_5285 NC_008596.1 5376770 5377642 R identified by match to protein family HMM PF01734; phospholipase complement(5376770..5377642) Mycobacterium smegmatis str. MC2 155 4534236 YP_889532.1 CDS MSMEG_5287 NC_008596.1 5377718 5378761 D identified by match to protein family HMM PF00107; dehydrogenase 5377718..5378761 Mycobacterium smegmatis str. MC2 155 4532240 YP_889533.1 CDS dapB NC_008596.1 5378758 5379807 R identified by match to protein family HMM PF01113; dihydrodipicolinate reductase N-terminus domain-containing protein complement(5378758..5379807) Mycobacterium smegmatis str. MC2 155 4531261 YP_889534.1 CDS MSMEG_5288 NC_008596.1 5379874 5382042 R identified by match to protein family HMM PF00376; serine/threonine protein kinase complement(5379874..5382042) Mycobacterium smegmatis str. MC2 155 4535350 YP_889535.1 CDS MSMEG_5289 NC_008596.1 5382010 5382222 D hypothetical protein 5382010..5382222 Mycobacterium smegmatis str. MC2 155 4535684 YP_889536.1 CDS MSMEG_5290 NC_008596.1 5382453 5382716 D hypothetical protein 5382453..5382716 Mycobacterium smegmatis str. MC2 155 4537726 YP_889537.1 CDS MSMEG_5291 NC_008596.1 5382807 5384423 R activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(5382807..5384423) Mycobacterium smegmatis str. MC2 155 4532100 YP_889538.1 CDS MSMEG_5292 NC_008596.1 5384572 5384877 D hypothetical protein 5384572..5384877 Mycobacterium smegmatis str. MC2 155 4535042 YP_889539.1 CDS MSMEG_5293 NC_008596.1 5384778 5384888 D hypothetical protein 5384778..5384888 Mycobacterium smegmatis str. MC2 155 4531144 YP_889540.1 CDS MSMEG_5294 NC_008596.1 5385097 5385258 D hypothetical protein 5385097..5385258 Mycobacterium smegmatis str. MC2 155 4530942 YP_889541.1 CDS MSMEG_5295 NC_008596.1 5385285 5386811 R activates fatty acids by binding to coenzyme A; acyl-CoA synthetase complement(5385285..5386811) Mycobacterium smegmatis str. MC2 155 4536416 YP_889542.1 CDS MSMEG_5296 NC_008596.1 5386813 5386935 R hypothetical protein complement(5386813..5386935) Mycobacterium smegmatis str. MC2 155 4534856 YP_889543.1 CDS MSMEG_5297 NC_008596.1 5386954 5388684 D catalyzes the formation of formyl-CoA from oxalyl-CoA; oxalyl-CoA decarboxylase 5386954..5388684 Mycobacterium smegmatis str. MC2 155 4531295 YP_889544.1 CDS MSMEG_5299 NC_008596.1 5388829 5389104 D hypothetical protein 5388829..5389104 Mycobacterium smegmatis str. MC2 155 4535707 YP_889545.1 CDS MSMEG_5298 NC_008596.1 5389047 5389361 R hypothetical protein complement(5389047..5389361) Mycobacterium smegmatis str. MC2 155 4534072 YP_889546.1 CDS MSMEG_5300 NC_008596.1 5389451 5390179 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short-chain type dehydrogenase/reductase complement(5389451..5390179) Mycobacterium smegmatis str. MC2 155 4533378 YP_889547.1 CDS MSMEG_5301 NC_008596.1 5390260 5390850 D identified by match to protein family HMM PF00440; transcriptional regulator 5390260..5390850 Mycobacterium smegmatis str. MC2 155 4532280 YP_889548.1 CDS MSMEG_5302 NC_008596.1 5390951 5392324 R identified by match to protein family HMM PF00375; aerobic C4-dicarboxylate transporter complement(5390951..5392324) Mycobacterium smegmatis str. MC2 155 4537736 YP_889549.1 CDS putP NC_008596.1 5392572 5394098 D identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121; sodium/proline symporter 5392572..5394098 Mycobacterium smegmatis str. MC2 155 4535418 YP_889550.1 CDS MSMEG_5304 NC_008596.1 5394189 5395772 D identified by match to protein family HMM PF02518; two-component sensor kinase 5394189..5395772 Mycobacterium smegmatis str. MC2 155 4537176 YP_889551.1 CDS MSMEG_5306 NC_008596.1 5395769 5396461 D identified by match to protein family HMM PF00072; two-component system response regulator 5395769..5396461 Mycobacterium smegmatis str. MC2 155 4533334 YP_889552.1 CDS MSMEG_5305 NC_008596.1 5396446 5397849 R identified by match to protein family HMM PF00732; match to protein family HMM PF05199; choline dehydrogenase complement(5396446..5397849) Mycobacterium smegmatis str. MC2 155 4532825 YP_889553.1 CDS MSMEG_5307 NC_008596.1 5397936 5398649 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 5397936..5398649 Mycobacterium smegmatis str. MC2 155 4535780 YP_889554.1 CDS MSMEG_5308 NC_008596.1 5398656 5399762 R hypothetical protein complement(5398656..5399762) Mycobacterium smegmatis str. MC2 155 4537403 YP_889555.1 CDS MSMEG_5309 NC_008596.1 5400142 5400870 R hypothetical protein complement(5400142..5400870) Mycobacterium smegmatis str. MC2 155 4533017 YP_889556.1 CDS MSMEG_5310 NC_008596.1 5400867 5401676 R SAM-dependent methyltransferase complement(5400867..5401676) Mycobacterium smegmatis str. MC2 155 4534239 YP_889557.1 CDS MSMEG_5311 NC_008596.1 5401673 5402452 R hypothetical protein complement(5401673..5402452) Mycobacterium smegmatis str. MC2 155 4535838 YP_889558.1 CDS MSMEG_5312 NC_008596.1 5402449 5403156 R identified by match to protein family HMM PF00005; multidrug ABC transporter ATPase complement(5402449..5403156) Mycobacterium smegmatis str. MC2 155 4536596 YP_889559.1 CDS MSMEG_5313 NC_008596.1 5403153 5403605 R hypothetical protein complement(5403153..5403605) Mycobacterium smegmatis str. MC2 155 4531024 YP_889560.1 CDS MSMEG_5314 NC_008596.1 5403732 5404646 R hypothetical protein complement(5403732..5404646) Mycobacterium smegmatis str. MC2 155 4533382 YP_889561.1 CDS MSMEG_5315 NC_008596.1 5404783 5405610 R identified by match to protein family HMM PF01471; match to protein family HMM PF01510; gp35 protein complement(5404783..5405610) Mycobacterium smegmatis str. MC2 155 4532112 YP_889562.1 CDS MSMEG_5317 NC_008596.1 5405691 5406437 D hypothetical protein 5405691..5406437 Mycobacterium smegmatis str. MC2 155 4532828 YP_889563.1 CDS MSMEG_5316 NC_008596.1 5406434 5407207 R identified by match to protein family HMM PF00005; glutamine ABC transporter ATP-binding protein complement(5406434..5407207) Mycobacterium smegmatis str. MC2 155 4536999 YP_889564.1 CDS MSMEG_5318 NC_008596.1 5407204 5408610 R identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamine ABC transporter permease/substrate-binding protein complement(5407204..5408610) Mycobacterium smegmatis str. MC2 155 4534135 YP_889565.1 CDS MSMEG_5319 NC_008596.1 5408767 5409213 R identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; alkylhydroperoxidase complement(5408767..5409213) Mycobacterium smegmatis str. MC2 155 4534305 YP_889566.1 CDS MSMEG_5320 NC_008596.1 5409212 5409379 D hypothetical protein 5409212..5409379 Mycobacterium smegmatis str. MC2 155 4535495 YP_889567.1 CDS MSMEG_5321 NC_008596.1 5409376 5409696 D hypothetical protein 5409376..5409696 Mycobacterium smegmatis str. MC2 155 4535795 YP_889568.1 CDS MSMEG_5322 NC_008596.1 5409749 5411089 R hypothetical protein complement(5409749..5411089) Mycobacterium smegmatis str. MC2 155 4535369 YP_889569.1 CDS MSMEG_5323 NC_008596.1 5411574 5412371 R hypothetical protein complement(5411574..5412371) Mycobacterium smegmatis str. MC2 155 4536694 YP_889570.1 CDS MSMEG_5324 NC_008596.1 5412499 5413248 R hypothetical protein complement(5412499..5413248) Mycobacterium smegmatis str. MC2 155 4532788 YP_889571.1 CDS MSMEG_5326 NC_008596.1 5413234 5413683 D hypothetical protein 5413234..5413683 Mycobacterium smegmatis str. MC2 155 4534123 YP_889572.1 CDS MSMEG_5325 NC_008596.1 5413309 5413632 R hypothetical protein complement(5413309..5413632) Mycobacterium smegmatis str. MC2 155 4531335 YP_889573.1 CDS MSMEG_5327 NC_008596.1 5413873 5414196 D hypothetical protein 5413873..5414196 Mycobacterium smegmatis str. MC2 155 4536795 YP_889574.1 CDS MSMEG_5328 NC_008596.1 5414528 5414827 D hypothetical protein 5414528..5414827 Mycobacterium smegmatis str. MC2 155 4536546 YP_889575.1 CDS MSMEG_5329 NC_008596.1 5414886 5415626 R identified by match to protein family HMM PF01169; hypothetical protein complement(5414886..5415626) Mycobacterium smegmatis str. MC2 155 4534425 YP_889576.1 CDS MSMEG_5330 NC_008596.1 5415960 5416961 R identified by match to protein family HMM PF01380; SIS domain-containing protein complement(5415960..5416961) Mycobacterium smegmatis str. MC2 155 4531995 YP_889577.1 CDS MSMEG_5332 NC_008596.1 5419476 5420084 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(5419476..5420084) Mycobacterium smegmatis str. MC2 155 4536764 YP_889578.1 CDS MSMEG_5333 NC_008596.1 5420232 5420573 D hypothetical protein 5420232..5420573 Mycobacterium smegmatis str. MC2 155 4535847 YP_889579.1 CDS MSMEG_5334 NC_008596.1 5420674 5421282 R hypothetical protein complement(5420674..5421282) Mycobacterium smegmatis str. MC2 155 4534004 YP_889580.1 CDS MSMEG_5335 NC_008596.1 5421419 5422666 R identified by match to protein family HMM PF03069; formamidase complement(5421419..5422666) Mycobacterium smegmatis str. MC2 155 4532913 YP_889581.1 CDS MSMEG_5336 NC_008596.1 5422683 5423324 R identified by match to protein family HMM PF02293; amidate substrates transporter protein complement(5422683..5423324) Mycobacterium smegmatis str. MC2 155 4537292 YP_889582.1 CDS MSMEG_5338 NC_008596.1 5423695 5424123 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(5423695..5424123) Mycobacterium smegmatis str. MC2 155 4537290 YP_889583.1 CDS MSMEG_5339 NC_008596.1 5424226 5425299 D nitrile hydratase regulator1 5424226..5425299 Mycobacterium smegmatis str. MC2 155 4531145 YP_889584.1 CDS MSMEG_5340 NC_008596.1 5425307 5425912 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(5425307..5425912) Mycobacterium smegmatis str. MC2 155 4531045 YP_889585.1 CDS MSMEG_5341 NC_008596.1 5426007 5427203 D identified by match to protein family HMM PF00561; dipeptidyl aminopeptidase/acylaminoacyl peptidase 5426007..5427203 Mycobacterium smegmatis str. MC2 155 4532214 YP_889586.1 CDS MSMEG_5342 NC_008596.1 5427211 5427540 R hypothetical protein complement(5427211..5427540) Mycobacterium smegmatis str. MC2 155 4532271 YP_889587.1 CDS MSMEG_5343 NC_008596.1 5427543 5427890 R hypothetical protein complement(5427543..5427890) Mycobacterium smegmatis str. MC2 155 4534830 YP_889588.1 CDS MSMEG_5344 NC_008596.1 5427953 5428183 R hypothetical protein complement(5427953..5428183) Mycobacterium smegmatis str. MC2 155 4532140 YP_889589.1 CDS MSMEG_5345 NC_008596.1 5428272 5429072 D identified by match to protein family HMM PF00722; glycosyl hydrolase family protein 5428272..5429072 Mycobacterium smegmatis str. MC2 155 4534346 YP_889590.1 CDS MSMEG_5346 NC_008596.1 5429236 5429868 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(5429236..5429868) Mycobacterium smegmatis str. MC2 155 4535245 YP_889591.1 CDS MSMEG_5347 NC_008596.1 5430067 5431389 D identified by match to protein family HMM PF07690; transporter major facilitator family protein 5430067..5431389 Mycobacterium smegmatis str. MC2 155 4536909 YP_889592.1 CDS MSMEG_5348 NC_008596.1 5431409 5433004 D identified by match to protein family HMM PF00501; medium-chain fatty acid-CoA ligase 5431409..5433004 Mycobacterium smegmatis str. MC2 155 4531899 YP_889593.1 CDS MSMEG_5349 NC_008596.1 5433042 5433650 D identified by match to protein family HMM TIGR03083; hypothetical protein 5433042..5433650 Mycobacterium smegmatis str. MC2 155 4536559 YP_889594.1 CDS MSMEG_5350 NC_008596.1 5433830 5435251 R PPE family protein complement(5433830..5435251) Mycobacterium smegmatis str. MC2 155 4536695 YP_889595.1 CDS MSMEG_5351 NC_008596.1 5435376 5435558 R hypothetical protein complement(5435376..5435558) Mycobacterium smegmatis str. MC2 155 4537732 YP_889596.1 CDS MSMEG_5352 NC_008596.1 5435666 5435977 D hypothetical protein 5435666..5435977 Mycobacterium smegmatis str. MC2 155 4534560 YP_889597.1 CDS MSMEG_5353 NC_008596.1 5435982 5436746 R methyltransferase complement(5435982..5436746) Mycobacterium smegmatis str. MC2 155 4536938 YP_889598.1 CDS MSMEG_5354 NC_008596.1 5436911 5437936 D identified by match to protein family HMM PF00891; O-methyltransferase, family protein 2 5436911..5437936 Mycobacterium smegmatis str. MC2 155 4535582 YP_889599.1 CDS MSMEG_5355 NC_008596.1 5437985 5438560 R hypothetical protein complement(5437985..5438560) Mycobacterium smegmatis str. MC2 155 4533219 YP_889600.1 CDS MSMEG_5356 NC_008596.1 5438797 5439021 R hypothetical protein complement(5438797..5439021) Mycobacterium smegmatis str. MC2 155 4530860 YP_889601.1 CDS MSMEG_5357 NC_008596.1 5439081 5439218 D hypothetical protein 5439081..5439218 Mycobacterium smegmatis str. MC2 155 4532024 YP_889602.1 CDS MSMEG_5358 NC_008596.1 5439246 5440604 R identified by match to protein family HMM PF03069; match to protein family HMM TIGR01409; acetamidase/formamidase complement(5439246..5440604) Mycobacterium smegmatis str. MC2 155 4531484 YP_889603.1 CDS cynS NC_008596.1 5440718 5441167 R catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide; cyanate hydratase complement(5440718..5441167) Mycobacterium smegmatis str. MC2 155 4532432 YP_889604.1 CDS MSMEG_5360 NC_008596.1 5441164 5442024 R identified by match to protein family HMM PF01226; formate/nitrate transporter complement(5441164..5442024) Mycobacterium smegmatis str. MC2 155 4535080 YP_889605.1 CDS MSMEG_5361 NC_008596.1 5442132 5442812 R hypothetical protein complement(5442132..5442812) Mycobacterium smegmatis str. MC2 155 4532607 YP_889606.1 CDS MSMEG_5362 NC_008596.1 5442231 5442995 D hypothetical protein 5442231..5442995 Mycobacterium smegmatis str. MC2 155 4531104 YP_889607.1 CDS MSMEG_5363 NC_008596.1 5442992 5443366 D hypothetical protein 5442992..5443366 Mycobacterium smegmatis str. MC2 155 4533668 YP_889608.1 CDS MSMEG_5364 NC_008596.1 5443516 5444469 R identified by match to protein family HMM PF04909; amidohydrolase complement(5443516..5444469) Mycobacterium smegmatis str. MC2 155 4536385 YP_889609.1 CDS MSMEG_5365 NC_008596.1 5444594 5444881 R RNA polymerase sigma-70 factor complement(5444594..5444881) Mycobacterium smegmatis str. MC2 155 4533421 YP_889610.1 CDS MSMEG_5366 NC_008596.1 5444953 5445444 D hypothetical protein 5444953..5445444 Mycobacterium smegmatis str. MC2 155 4531081 YP_889611.1 CDS ehuB NC_008596.1 5446146 5447081 D identified by match to protein family HMM PF00497; match to protein family HMM TIGR02995; ectoine/hydroxyectoine ABC transporter solute-binding protein 5446146..5447081 Mycobacterium smegmatis str. MC2 155 4532980 YP_889612.1 CDS ehuC NC_008596.1 5447086 5447784 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; match to protein family HMM TIGR03004; ectoine/hydroxyectoine ABC transporter permease EhuC 5447086..5447784 Mycobacterium smegmatis str. MC2 155 4536653 YP_889613.1 CDS ehuD NC_008596.1 5447781 5448449 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; match to protein family HMM TIGR03003; ectoine/hydroxyectoine ABC transporter permease EhuD 5447781..5448449 Mycobacterium smegmatis str. MC2 155 4533164 YP_889614.1 CDS ehuA NC_008596.1 5448466 5449230 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR03005; ectoine/hydroxyectoine ABC transporter ATP-binding protein 5448466..5449230 Mycobacterium smegmatis str. MC2 155 4532172 YP_889615.1 CDS MSMEG_5372 NC_008596.1 5449234 5451729 R identified by match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702; sensor protein KdpD complement(5449234..5451729) Mycobacterium smegmatis str. MC2 155 4534327 YP_889616.1 CDS MSMEG_5373 NC_008596.1 5451846 5452871 R identified by match to protein family HMM PF00795; nitrilase 2 complement(5451846..5452871) Mycobacterium smegmatis str. MC2 155 4536047 YP_889617.1 CDS MSMEG_5374 NC_008596.1 5452917 5454350 R identified by match to protein family HMM PF00120; glutamate--ammonia ligase complement(5452917..5454350) Mycobacterium smegmatis str. MC2 155 4531733 YP_889618.1 CDS MSMEG_5375 NC_008596.1 5454493 5455191 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator complement(5454493..5455191) Mycobacterium smegmatis str. MC2 155 4533445 YP_889619.1 CDS MSMEG_5376 NC_008596.1 5455289 5455684 R identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026; hypothetical protein complement(5455289..5455684) Mycobacterium smegmatis str. MC2 155 4531767 YP_889620.1 CDS MSMEG_5377 NC_008596.1 5456127 5456711 R hypothetical protein complement(5456127..5456711) Mycobacterium smegmatis str. MC2 155 4534989 YP_889621.1 CDS MSMEG_5378 NC_008596.1 5456430 5457752 D identified by similarity to GP:150005; match to protein family HMM PF01610; IS1096, tnpA protein 5456430..5457752 Mycobacterium smegmatis str. MC2 155 4535395 YP_889622.1 CDS MSMEG_5379 NC_008596.1 5457760 5458461 R identified by similarity to GP:150004; match to protein family HMM PF07929; IS1096, tnpR protein complement(5457760..5458461) Mycobacterium smegmatis str. MC2 155 4531727 YP_889623.1 CDS MSMEG_5381 NC_008596.1 5461316 5462167 R hypothetical protein complement(5461316..5462167) Mycobacterium smegmatis str. MC2 155 4534962 YP_889624.1 CDS MSMEG_5383 NC_008596.1 5462776 5463546 R identified by match to protein family HMM PF00106; dehydrogenase/reductase SDR family protein member 4 complement(5462776..5463546) Mycobacterium smegmatis str. MC2 155 4535572 YP_889625.1 CDS MSMEG_5384 NC_008596.1 5463546 5463671 R hypothetical protein complement(5463546..5463671) Mycobacterium smegmatis str. MC2 155 4535381 YP_889626.1 CDS MSMEG_5385 NC_008596.1 5463644 5465023 R identified by match to protein family HMM PF00581; match to protein family HMM PF00753; metallo-beta-lactamase complement(5463644..5465023) Mycobacterium smegmatis str. MC2 155 4532117 YP_889627.1 CDS MSMEG_5386 NC_008596.1 5465174 5465761 D identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein 5465174..5465761 Mycobacterium smegmatis str. MC2 155 4535524 YP_889628.1 CDS MSMEG_5387 NC_008596.1 5465768 5466640 D identified by match to protein family HMM PF01925; hypothetical protein 5465768..5466640 Mycobacterium smegmatis str. MC2 155 4531677 YP_889629.1 CDS MSMEG_5388 NC_008596.1 5466725 5466973 D identified by match to protein family HMM PF02583; hypothetical protein 5466725..5466973 Mycobacterium smegmatis str. MC2 155 4537498 YP_889630.1 CDS MSMEG_5390 NC_008596.1 5466991 5467392 D identified by match to protein family HMM PF03625; hypothetical protein 5466991..5467392 Mycobacterium smegmatis str. MC2 155 4537386 YP_889631.1 CDS MSMEG_5389 NC_008596.1 5467389 5468102 R LysA protein complement(5467389..5468102) Mycobacterium smegmatis str. MC2 155 4537032 YP_889632.1 CDS MSMEG_5391 NC_008596.1 5468304 5468513 D hypothetical protein 5468304..5468513 Mycobacterium smegmatis str. MC2 155 4536707 YP_889633.1 CDS kdpA NC_008596.1 5468513 5470183 D catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase A 5468513..5470183 Mycobacterium smegmatis str. MC2 155 4534833 YP_889634.1 CDS kdpB NC_008596.1 5470183 5472330 D One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B 5470183..5472330 Mycobacterium smegmatis str. MC2 155 4534328 YP_889635.1 CDS MSMEG_5394 NC_008596.1 5472332 5473198 D identified by match to protein family HMM PF02669; potassium-transporting ATPase subunit C 5472332..5473198 Mycobacterium smegmatis str. MC2 155 4534162 YP_889636.1 CDS MSMEG_5395 NC_008596.1 5473206 5475725 D identified by match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702; sensor protein KdpD 5473206..5475725 Mycobacterium smegmatis str. MC2 155 4537020 YP_889637.1 CDS MSMEG_5396 NC_008596.1 5475722 5476414 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; KDP operon transcriptional regulatory protein KdpE 5475722..5476414 Mycobacterium smegmatis str. MC2 155 4537656 YP_889638.1 CDS recQ NC_008596.1 5476470 5477615 R identified by match to protein family HMM PF00271; ATP-dependent DNA helicase RecQ complement(5476470..5477615) Mycobacterium smegmatis str. MC2 155 4531052 YP_889639.1 CDS MSMEG_5398 NC_008596.1 5477639 5479006 R identified by similarity to GP:150005; match to protein family HMM PF01610; ISMsm4, transposase complement(5477639..5479006) Mycobacterium smegmatis str. MC2 155 4533391 YP_889640.1 CDS MSMEG_5399 NC_008596.1 5479025 5479549 R identified by match to protein family HMM PF00270; ATP-dependent DNA helicase RecQ complement(5479025..5479549) Mycobacterium smegmatis str. MC2 155 4534248 YP_889641.1 CDS MSMEG_5400 NC_008596.1 5479546 5481138 R identified by match to protein family HMM PF01266; match to protein family HMM PF01593; dehydrogenase complement(5479546..5481138) Mycobacterium smegmatis str. MC2 155 4532233 YP_889642.1 CDS MSMEG_5401 NC_008596.1 5481135 5481614 R hypothetical protein complement(5481135..5481614) Mycobacterium smegmatis str. MC2 155 4531740 YP_889643.1 CDS MSMEG_5402 NC_008596.1 5481632 5482420 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; dehydrogenase DhgA complement(5481632..5482420) Mycobacterium smegmatis str. MC2 155 4532689 YP_889644.1 CDS MSMEG_5404 NC_008596.1 5482552 5484423 D identified by match to protein family HMM PF00501; propionate--CoA ligase 5482552..5484423 Mycobacterium smegmatis str. MC2 155 4536830 YP_889645.1 CDS cadA NC_008596.1 5484398 5486341 R identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525; cadmium-translocating P-type ATPase complement(5484398..5486341) Mycobacterium smegmatis str. MC2 155 4534378 YP_889646.1 CDS MSMEG_5405 NC_008596.1 5486438 5486791 D identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 5486438..5486791 Mycobacterium smegmatis str. MC2 155 4530858 YP_889647.1 CDS MSMEG_5406 NC_008596.1 5487002 5487118 D hypothetical protein 5487002..5487118 Mycobacterium smegmatis str. MC2 155 4537535 YP_889648.1 CDS MSMEG_5407 NC_008596.1 5487241 5487942 D integral membrane protein 5487241..5487942 Mycobacterium smegmatis str. MC2 155 4534816 YP_889649.1 CDS lgt NC_008596.1 5487967 5488752 D identified by match to protein family HMM PF01790; prolipoprotein diacylglyceryl transferase 5487967..5488752 Mycobacterium smegmatis str. MC2 155 4532792 YP_889650.1 CDS MSMEG_5409 NC_008596.1 5489073 5489366 D hypothetical protein 5489073..5489366 Mycobacterium smegmatis str. MC2 155 4536011 YP_889651.1 CDS MSMEG_5410 NC_008596.1 5489368 5490936 D identified by match to protein family HMM PF04055; radical SAM domain-containing protein 5489368..5490936 Mycobacterium smegmatis str. MC2 155 4532053 YP_889652.1 CDS MSMEG_5411 NC_008596.1 5490933 5491193 D hypothetical protein 5490933..5491193 Mycobacterium smegmatis str. MC2 155 4532016 YP_889653.1 CDS MSMEG_5412 NC_008596.1 5491336 5492376 D immunogenic protein MPT63 5491336..5492376 Mycobacterium smegmatis str. MC2 155 4536712 YP_889654.1 CDS MSMEG_5413 NC_008596.1 5492439 5493389 R identified by match to protein family HMM PF02541; exopolyphosphatase complement(5492439..5493389) Mycobacterium smegmatis str. MC2 155 4531379 YP_889655.1 CDS MSMEG_5414 NC_008596.1 5493380 5494549 R identified by match to protein family HMM PF04417; match to protein family HMM PF04977; septum formation initiator subfamily protein complement(5493380..5494549) Mycobacterium smegmatis str. MC2 155 4533281 YP_889656.1 CDS eno NC_008596.1 5494583 5495866 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(5494583..5495866) Mycobacterium smegmatis str. MC2 155 4536396 YP_889657.1 CDS MSMEG_5416 NC_008596.1 5495931 5496605 R LpqU protein complement(5495931..5496605) Mycobacterium smegmatis str. MC2 155 4534177 YP_889658.1 CDS MSMEG_5417 NC_008596.1 5496611 5496763 D hypothetical protein 5496611..5496763 Mycobacterium smegmatis str. MC2 155 4535084 YP_889659.1 CDS MSMEG_5418 NC_008596.1 5496846 5497778 D identified by match to protein family HMM PF03239; iron permease 5496846..5497778 Mycobacterium smegmatis str. MC2 155 4531050 YP_889660.1 CDS MSMEG_5420 NC_008596.1 5498980 5500266 D identified by match to protein family HMM PF04261; match to protein family HMM TIGR01409; match to protein family HMM TIGR01412; match to protein family HMM TIGR01413; Tat-translocated enzyme 5498980..5500266 Mycobacterium smegmatis str. MC2 155 4531482 YP_889661.1 CDS MSMEG_5421 NC_008596.1 5501007 5503937 D hypothetical protein 5501007..5503937 Mycobacterium smegmatis str. MC2 155 4535247 YP_889662.1 CDS MSMEG_5422 NC_008596.1 5504059 5505033 R functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase Era; nucleoside triphosphate pyrophosphohydrolase complement(5504059..5505033) Mycobacterium smegmatis str. MC2 155 4532424 YP_889663.1 CDS mfd NC_008596.1 5505030 5508677 R identified by similarity to SP:P37474; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM TIGR00580; transcription-repair coupling factor complement(5505030..5508677) Mycobacterium smegmatis str. MC2 155 4536494 YP_889664.1 CDS MSMEG_5424 NC_008596.1 5508726 5509340 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(5508726..5509340) Mycobacterium smegmatis str. MC2 155 4534196 YP_889665.1 CDS glmU NC_008596.1 5509565 5511013 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 5509565..5511013 Mycobacterium smegmatis str. MC2 155 4532260 YP_889666.1 CDS MSMEG_5427 NC_008596.1 5511115 5512095 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 5511115..5512095 Mycobacterium smegmatis str. MC2 155 4533925 YP_889667.1 CDS arsC NC_008596.1 5512096 5512443 D identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014; arsenate reductase 5512096..5512443 Mycobacterium smegmatis str. MC2 155 4535120 YP_889668.1 CDS MSMEG_5429 NC_008596.1 5512458 5513096 D LpqT protein 5512458..5513096 Mycobacterium smegmatis str. MC2 155 4533376 YP_889669.1 CDS MSMEG_5430 NC_008596.1 5513126 5513998 D identified by match to protein family HMM PF00106; retinol dehydrogenase 13 5513126..5513998 Mycobacterium smegmatis str. MC2 155 4532883 YP_889670.1 CDS MSMEG_5431 NC_008596.1 5514158 5514805 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 5514158..5514805 Mycobacterium smegmatis str. MC2 155 4534609 YP_889671.1 CDS pth NC_008596.1 5514818 5515393 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 5514818..5515393 Mycobacterium smegmatis str. MC2 155 4537016 YP_889672.1 CDS MSMEG_5433 NC_008596.1 5515581 5516618 R identified by match to protein family HMM PF00037; 4Fe-4S ferredoxin complement(5515581..5516618) Mycobacterium smegmatis str. MC2 155 4536407 YP_889673.1 CDS MSMEG_5434 NC_008596.1 5516811 5517245 D hypothetical protein 5516811..5517245 Mycobacterium smegmatis str. MC2 155 4533823 YP_889674.1 CDS MSMEG_5435 NC_008596.1 5517344 5518981 R activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(5517344..5518981) Mycobacterium smegmatis str. MC2 155 4531735 YP_889675.1 CDS ispE NC_008596.1 5519402 5520370 R catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(5519402..5520370) Mycobacterium smegmatis str. MC2 155 4537206 YP_889676.1 CDS MSMEG_5437 NC_008596.1 5520425 5521288 D identified by match to protein family HMM PF00069; match to protein family HMM PF01163; serine/threonine protein kinase 5520425..5521288 Mycobacterium smegmatis str. MC2 155 4533424 YP_889677.1 CDS ksgA NC_008596.1 5521390 5522283 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(5521390..5522283) Mycobacterium smegmatis str. MC2 155 4531120 YP_889678.1 CDS MSMEG_5439 NC_008596.1 5522319 5523446 R identified by match to protein family HMM PF03990; match to protein family HMM PF06737; match to protein family HMM PF07501; resuscitation-promoting factor RpfB complement(5522319..5523446) Mycobacterium smegmatis str. MC2 155 4534387 YP_889679.1 CDS MSMEG_5440 NC_008596.1 5523539 5524393 R identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; deoxyribonuclease complement(5523539..5524393) Mycobacterium smegmatis str. MC2 155 4531142 YP_889680.1 CDS metG NC_008596.1 5524418 5525965 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 5524418..5525965 Mycobacterium smegmatis str. MC2 155 4535341 YP_889681.1 CDS MSMEG_5442 NC_008596.1 5525967 5527316 D converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 5525967..5527316 Mycobacterium smegmatis str. MC2 155 4536562 YP_889682.1 CDS MSMEG_5443 NC_008596.1 5527410 5528603 D identified by match to protein family HMM PF00070; match to protein family HMM PF07992; dehydrogenase 5527410..5528603 Mycobacterium smegmatis str. MC2 155 4534121 YP_889683.1 CDS MSMEG_5444 NC_008596.1 5528600 5529505 D identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; match to protein family HMM TIGR02957; RNA polymerase sigma-70 factor protein 5528600..5529505 Mycobacterium smegmatis str. MC2 155 4536675 YP_889684.1 CDS pabB NC_008596.1 5529526 5530779 D catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; aminodeoxychorismate synthase component I 5529526..5530779 Mycobacterium smegmatis str. MC2 155 4533188 YP_889685.1 CDS MSMEG_5445 NC_008596.1 5530749 5531585 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; hypothetical protein complement(5530749..5531585) Mycobacterium smegmatis str. MC2 155 4537388 YP_889686.1 CDS MSMEG_5447 NC_008596.1 5531610 5533160 D identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase 5531610..5533160 Mycobacterium smegmatis str. MC2 155 4533117 YP_889687.1 CDS MSMEG_5449 NC_008596.1 5533473 5534486 D hypothetical protein 5533473..5534486 Mycobacterium smegmatis str. MC2 155 4534766 YP_889688.1 CDS arcA NC_008596.1 5534381 5535589 R catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase complement(5534381..5535589) Mycobacterium smegmatis str. MC2 155 4532803 YP_889689.1 CDS soxR NC_008596.1 5535642 5536067 D identified by similarity to SP:P22538; match to protein family HMM PF00376; match to protein family HMM TIGR01950; redox-sensitive transcriptional activator SoxR 5535642..5536067 Mycobacterium smegmatis str. MC2 155 4531537 YP_889690.1 CDS MSMEG_5451 NC_008596.1 5536101 5536697 D alkylated DNA repair protein 5536101..5536697 Mycobacterium smegmatis str. MC2 155 4533609 YP_889691.1 CDS MSMEG_5452 NC_008596.1 5536711 5537388 R hypothetical protein complement(5536711..5537388) Mycobacterium smegmatis str. MC2 155 4537392 YP_889692.1 CDS MSMEG_5453 NC_008596.1 5537418 5538080 R hypothetical protein complement(5537418..5538080) Mycobacterium smegmatis str. MC2 155 4533990 YP_889693.1 CDS MSMEG_5454 NC_008596.1 5538195 5539166 D identified by match to protein family HMM PF02275; choloylglycine hydrolase 5538195..5539166 Mycobacterium smegmatis str. MC2 155 4534980 YP_889694.1 CDS MSMEG_5455 NC_008596.1 5539167 5540630 R PE family protein complement(5539167..5540630) Mycobacterium smegmatis str. MC2 155 4532475 YP_889695.1 CDS MSMEG_5456 NC_008596.1 5540925 5541641 D MK35 lipoprotein 5540925..5541641 Mycobacterium smegmatis str. MC2 155 4535384 YP_889696.1 CDS MSMEG_5457 NC_008596.1 5541650 5542498 R catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(5541650..5542498) Mycobacterium smegmatis str. MC2 155 4533172 YP_889697.1 CDS MSMEG_5458 NC_008596.1 5542495 5543496 R identified by match to protein family HMM PF00027; cyclic nucleotide-binding protein complement(5542495..5543496) Mycobacterium smegmatis str. MC2 155 4534401 YP_889698.1 CDS MSMEG_5459 NC_008596.1 5543529 5543693 R hypothetical protein complement(5543529..5543693) Mycobacterium smegmatis str. MC2 155 4532779 YP_889699.1 CDS MSMEG_5460 NC_008596.1 5543717 5544271 R hypothetical protein complement(5543717..5544271) Mycobacterium smegmatis str. MC2 155 4535035 YP_889700.1 CDS MSMEG_5461 NC_008596.1 5544268 5544540 R hypothetical protein complement(5544268..5544540) Mycobacterium smegmatis str. MC2 155 4532769 YP_889701.1 CDS rarD NC_008596.1 5545249 5546187 D identified by match to protein family HMM TIGR00688; RarD protein 5545249..5546187 Mycobacterium smegmatis str. MC2 155 4537451 YP_889702.1 CDS MSMEG_5463 NC_008596.1 5546238 5547116 D identified by match to protein family HMM PF03446; 6-phosphogluconate dehydrogenase 5546238..5547116 Mycobacterium smegmatis str. MC2 155 4533674 YP_889703.1 CDS MSMEG_5464 NC_008596.1 5547113 5548270 D identified by match to protein family HMM PF07690; integral membrane transporter 5547113..5548270 Mycobacterium smegmatis str. MC2 155 4534685 YP_889704.1 CDS MSMEG_5466 NC_008596.1 5548286 5549011 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; oxidoreductase 5548286..5549011 Mycobacterium smegmatis str. MC2 155 4536040 YP_889705.1 CDS MSMEG_5465 NC_008596.1 5548969 5549820 R identified by match to protein family HMM PF00165; match to protein family HMM PF02311; AraC family transcriptional regulator complement(5548969..5549820) Mycobacterium smegmatis str. MC2 155 4533159 YP_889706.1 CDS MSMEG_5468 NC_008596.1 5550191 5551345 R hypothetical protein complement(5550191..5551345) Mycobacterium smegmatis str. MC2 155 4533473 YP_889707.1 CDS MSMEG_5469 NC_008596.1 5551581 5552210 R identified by match to protein family HMM PF00583; GNAT family acetyltransferase complement(5551581..5552210) Mycobacterium smegmatis str. MC2 155 4535289 YP_889708.1 CDS MSMEG_5470 NC_008596.1 5552239 5553486 R identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis protein MoeA 1 complement(5552239..5553486) Mycobacterium smegmatis str. MC2 155 4534724 YP_889709.1 CDS galU NC_008596.1 5553543 5554439 R identified by match to protein family HMM PF00483; UTP-glucose-1-phosphate uridylyltransferase complement(5553543..5554439) Mycobacterium smegmatis str. MC2 155 4534482 YP_889710.1 CDS MSMEG_5472 NC_008596.1 5554506 5555090 D identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5,10-methenyltetrahydrofolate synthetase 5554506..5555090 Mycobacterium smegmatis str. MC2 155 4534639 YP_889711.1 CDS MSMEG_5473 NC_008596.1 5555211 5557037 D identified by match to protein family HMM PF00324; transporter 5555211..5557037 Mycobacterium smegmatis str. MC2 155 4531403 YP_889712.1 CDS MSMEG_5474 NC_008596.1 5557034 5557930 D identified by match to protein family HMM PF00582; universal stress protein family protein 5557034..5557930 Mycobacterium smegmatis str. MC2 155 4531260 YP_889713.1 CDS MSMEG_5475 NC_008596.1 5557934 5558698 R identified by match to protein family HMM PF01614; acetate operon repressor complement(5557934..5558698) Mycobacterium smegmatis str. MC2 155 4537183 YP_889714.1 CDS gcl NC_008596.1 5558806 5560602 R catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase complement(5558806..5560602) Mycobacterium smegmatis str. MC2 155 4532633 YP_889715.1 CDS MSMEG_5477 NC_008596.1 5560599 5561513 R identified by match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR01505; 2-hydroxy-3-oxopropionate reductase complement(5560599..5561513) Mycobacterium smegmatis str. MC2 155 4533049 YP_889716.1 CDS MSMEG_5478 NC_008596.1 5561544 5562377 R identified by similarity to SP:P30147; match to protein family HMM PF01261; hydroxypyruvate isomerase complement(5561544..5562377) Mycobacterium smegmatis str. MC2 155 4537147 YP_889717.1 CDS MSMEG_5479 NC_008596.1 5562618 5562938 D identified by match to protein family HMM TIGR02605; type I antifreeze protein 5562618..5562938 Mycobacterium smegmatis str. MC2 155 4532467 YP_889718.1 CDS MSMEG_5481 NC_008596.1 5563017 5563667 D hypothetical protein 5563017..5563667 Mycobacterium smegmatis str. MC2 155 4535943 YP_889719.1 CDS MSMEG_5480 NC_008596.1 5563661 5563867 R hypothetical protein complement(5563661..5563867) Mycobacterium smegmatis str. MC2 155 4531928 YP_889720.1 CDS mscL NC_008596.1 5564013 5564483 D forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 5564013..5564483 Mycobacterium smegmatis str. MC2 155 4535762 YP_889721.1 CDS MSMEG_5483 NC_008596.1 5564562 5565209 R porin complement(5564562..5565209) Mycobacterium smegmatis str. MC2 155 4533136 YP_889722.1 CDS MSMEG_5484 NC_008596.1 5565602 5565760 R hypothetical protein complement(5565602..5565760) Mycobacterium smegmatis str. MC2 155 4532991 YP_889723.1 CDS MSMEG_5485 NC_008596.1 5565920 5566456 R identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; molybdopterin biosynthesis protein complement(5565920..5566456) Mycobacterium smegmatis str. MC2 155 4535712 YP_889724.1 CDS MSMEG_5486 NC_008596.1 5566507 5567841 R identified by match to protein family HMM PF00089; match to protein family HMM PF00595; peptidase S1 and S6, chymotrypsin/Hap complement(5566507..5567841) Mycobacterium smegmatis str. MC2 155 4536208 YP_889725.1 CDS MSMEG_5487 NC_008596.1 5568015 5569535 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(5568015..5569535) Mycobacterium smegmatis str. MC2 155 4530986 YP_889726.1 CDS MSMEG_5488 NC_008596.1 5569498 5570190 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(5569498..5570190) Mycobacterium smegmatis str. MC2 155 4532340 YP_889727.1 CDS rpmF NC_008596.1 5570348 5570521 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(5570348..5570521) Mycobacterium smegmatis str. MC2 155 4537258 YP_889728.1 CDS MSMEG_5490 NC_008596.1 5570784 5572490 D identified by match to protein family HMM PF07287; hypothetical protein 5570784..5572490 Mycobacterium smegmatis str. MC2 155 4533109 YP_889729.1 CDS MSMEG_5491 NC_008596.1 5572487 5573635 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 5572487..5573635 Mycobacterium smegmatis str. MC2 155 4531198 YP_889730.1 CDS MSMEG_5492 NC_008596.1 5573632 5575227 D identified by match to protein family HMM PF01039; acetyl-CoA carboxylase carboxyltransferase 5573632..5575227 Mycobacterium smegmatis str. MC2 155 4533251 YP_889731.1 CDS MSMEG_5493 NC_008596.1 5575327 5577273 D identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786; acetyl-/propionyl-coenzyme A carboxylase subunit alpha 5575327..5577273 Mycobacterium smegmatis str. MC2 155 4531251 YP_889732.1 CDS MSMEG_5494 NC_008596.1 5577270 5578430 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 5577270..5578430 Mycobacterium smegmatis str. MC2 155 4534220 YP_889733.1 CDS MSMEG_5495 NC_008596.1 5578430 5579197 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 5578430..5579197 Mycobacterium smegmatis str. MC2 155 4535887 YP_889734.1 CDS MSMEG_5496 NC_008596.1 5579234 5580490 D identified by match to protein family HMM PF00924; MscS mechanosensitive ion channel 5579234..5580490 Mycobacterium smegmatis str. MC2 155 4531561 YP_889735.1 CDS MSMEG_5497 NC_008596.1 5580542 5580670 D hypothetical protein 5580542..5580670 Mycobacterium smegmatis str. MC2 155 4536591 YP_889736.1 CDS MSMEG_5498 NC_008596.1 5580675 5581037 R hypothetical protein complement(5580675..5581037) Mycobacterium smegmatis str. MC2 155 4536911 YP_889737.1 CDS MSMEG_5499 NC_008596.1 5581091 5581405 R hypothetical protein complement(5581091..5581405) Mycobacterium smegmatis str. MC2 155 4531689 YP_889738.1 CDS MSMEG_5500 NC_008596.1 5581863 5582015 R hypothetical protein complement(5581863..5582015) Mycobacterium smegmatis str. MC2 155 4532161 YP_889739.1 CDS MSMEG_5501 NC_008596.1 5582007 5584286 D hypothetical protein 5582007..5584286 Mycobacterium smegmatis str. MC2 155 4535396 YP_889740.1 CDS MSMEG_5502 NC_008596.1 5584716 5586893 D hypothetical protein 5584716..5586893 Mycobacterium smegmatis str. MC2 155 4532503 YP_889741.1 CDS MSMEG_5503 NC_008596.1 5587465 5588505 D hypothetical protein 5587465..5588505 Mycobacterium smegmatis str. MC2 155 4535486 YP_889742.1 CDS MSMEG_5504 NC_008596.1 5588558 5589319 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF05368; hypothetical protein 5588558..5589319 Mycobacterium smegmatis str. MC2 155 4533845 YP_889743.1 CDS MSMEG_5505 NC_008596.1 5589415 5589999 D identified by match to protein family HMM PF08044; hypothetical protein 5589415..5589999 Mycobacterium smegmatis str. MC2 155 4531017 YP_889744.1 CDS MSMEG_5506 NC_008596.1 5590070 5590582 R hypothetical protein complement(5590070..5590582) Mycobacterium smegmatis str. MC2 155 4536102 YP_889745.1 CDS MSMEG_5507 NC_008596.1 5590921 5592249 R hypothetical protein complement(5590921..5592249) Mycobacterium smegmatis str. MC2 155 4532938 YP_889746.1 CDS MSMEG_5508 NC_008596.1 5593079 5594662 R identified by match to protein family HMM PF00245; match to protein family HMM TIGR01409; alkaline phosphatase complement(5593079..5594662) Mycobacterium smegmatis str. MC2 155 4531269 YP_889747.1 CDS MSMEG_5509 NC_008596.1 5594766 5595632 D hypothetical protein 5594766..5595632 Mycobacterium smegmatis str. MC2 155 4535801 YP_889748.1 CDS MSMEG_5511 NC_008596.1 5596653 5598653 R von Willebrand factor A complement(5596653..5598653) Mycobacterium smegmatis str. MC2 155 4533790 YP_889749.1 CDS MSMEG_5512 NC_008596.1 5598646 5600031 R magnesium chelatase complement(5598646..5600031) Mycobacterium smegmatis str. MC2 155 4537628 YP_889750.1 CDS MSMEG_5513 NC_008596.1 5600142 5601998 D identified by match to protein family HMM PF00069; serine/threonine protein kinase 5600142..5601998 Mycobacterium smegmatis str. MC2 155 4535103 YP_889751.1 CDS MSMEG_5514 NC_008596.1 5602005 5602658 R hypothetical protein complement(5602005..5602658) Mycobacterium smegmatis str. MC2 155 4532641 YP_889752.1 CDS purH NC_008596.1 5602692 5604275 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(5602692..5604275) Mycobacterium smegmatis str. MC2 155 4532183 YP_889753.1 CDS purN NC_008596.1 5604286 5604897 R glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase complement(5604286..5604897) Mycobacterium smegmatis str. MC2 155 4535043 YP_889754.1 CDS MSMEG_5517 NC_008596.1 5604926 5606389 R hypothetical protein complement(5604926..5606389) Mycobacterium smegmatis str. MC2 155 4531178 YP_889755.1 CDS MSMEG_5518 NC_008596.1 5606450 5607349 R antigen 34 kDa complement(5606450..5607349) Mycobacterium smegmatis str. MC2 155 4537572 YP_889756.1 CDS MSMEG_5519 NC_008596.1 5607496 5608626 R identified by match to protein family HMM PF00296; monooxygenase complement(5607496..5608626) Mycobacterium smegmatis str. MC2 155 4535885 YP_889757.1 CDS MSMEG_5520 NC_008596.1 5608770 5609618 D identified by match to protein family HMM PF00296; hypothetical protein 5608770..5609618 Mycobacterium smegmatis str. MC2 155 4533418 YP_889758.1 CDS MSMEG_5521 NC_008596.1 5609621 5611144 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(5609621..5611144) Mycobacterium smegmatis str. MC2 155 4534167 YP_889759.1 CDS MSMEG_5522 NC_008596.1 5611326 5611943 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 5611326..5611943 Mycobacterium smegmatis str. MC2 155 4537508 YP_889760.1 CDS MSMEG_5523 NC_008596.1 5612016 5613869 D identified by match to protein family HMM PF00326; match to protein family HMM PF02129; peptidase 5612016..5613869 Mycobacterium smegmatis str. MC2 155 4531352 YP_889761.1 CDS sucD NC_008596.1 5613938 5614840 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(5613938..5614840) Mycobacterium smegmatis str. MC2 155 4530890 YP_889762.1 CDS sucC NC_008596.1 5614853 5616016 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(5614853..5616016) Mycobacterium smegmatis str. MC2 155 4535810 YP_889763.1 CDS MSMEG_5526 NC_008596.1 5616372 5617415 D identified by match to protein family HMM PF01551; peptidoglycan-binding LysM 5616372..5617415 Mycobacterium smegmatis str. MC2 155 4536504 YP_889764.1 CDS MSMEG_5527 NC_008596.1 5617416 5618099 D hypothetical protein 5617416..5618099 Mycobacterium smegmatis str. MC2 155 4534834 YP_889765.1 CDS MSMEG_5528 NC_008596.1 5618136 5618255 R hypothetical protein complement(5618136..5618255) Mycobacterium smegmatis str. MC2 155 4533698 YP_889766.1 CDS MSMEG_5529 NC_008596.1 5618274 5619242 D hypothetical protein 5618274..5619242 Mycobacterium smegmatis str. MC2 155 4535906 YP_889767.1 CDS MSMEG_5530 NC_008596.1 5619221 5620093 D identified by match to protein family HMM PF00528; aliphatic sulfonates transport permease SsuC 5619221..5620093 Mycobacterium smegmatis str. MC2 155 4537217 YP_889768.1 CDS MSMEG_5531 NC_008596.1 5620090 5620818 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 5620090..5620818 Mycobacterium smegmatis str. MC2 155 4536413 YP_889769.1 CDS MSMEG_5532 NC_008596.1 5620808 5622400 D identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; FAD dependent oxidoreductase 5620808..5622400 Mycobacterium smegmatis str. MC2 155 4532200 YP_889770.1 CDS MSMEG_5533 NC_008596.1 5622397 5622798 D identified by match to protein family HMM PF00037; 4Fe-4S ferredoxin 5622397..5622798 Mycobacterium smegmatis str. MC2 155 4536480 YP_889771.1 CDS pcrA NC_008596.1 5622802 5625153 R identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073; ATP-dependent DNA helicase PcrA complement(5622802..5625153) Mycobacterium smegmatis str. MC2 155 4533238 YP_889772.1 CDS MSMEG_5535 NC_008596.1 5625064 5625345 D hypothetical protein 5625064..5625345 Mycobacterium smegmatis str. MC2 155 4536116 YP_889773.1 CDS MSMEG_5536 NC_008596.1 5625390 5625656 D identified by match to protein family HMM TIGR01808; chorismate mutase 5625390..5625656 Mycobacterium smegmatis str. MC2 155 4536816 YP_889774.1 CDS MSMEG_5537 NC_008596.1 5625750 5627759 R identified by match to protein family HMM PF01757; integral membrane protein complement(5625750..5627759) Mycobacterium smegmatis str. MC2 155 4535977 YP_889775.1 CDS MSMEG_5539 NC_008596.1 5627890 5628903 D hypothetical protein 5627890..5628903 Mycobacterium smegmatis str. MC2 155 4531007 YP_889776.1 CDS MSMEG_5538 NC_008596.1 5628893 5630341 R identified by match to protein family HMM PF00171; [NADP+] succinate-semialdehyde dehydrogenase complement(5628893..5630341) Mycobacterium smegmatis str. MC2 155 4537589 YP_889777.1 CDS pgi NC_008596.1 5630392 5632041 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 5630392..5632041 Mycobacterium smegmatis str. MC2 155 4534436 YP_889778.1 CDS MSMEG_5540 NC_008596.1 5632038 5632613 R hypothetical protein complement(5632038..5632613) Mycobacterium smegmatis str. MC2 155 4536804 YP_889779.1 CDS MSMEG_5542 NC_008596.1 5632606 5632887 R identified by match to protein family HMM PF01381; transcriptional regulator complement(5632606..5632887) Mycobacterium smegmatis str. MC2 155 4531170 YP_889780.1 CDS MSMEG_5543 NC_008596.1 5632985 5633326 R hypothetical protein complement(5632985..5633326) Mycobacterium smegmatis str. MC2 155 4531940 YP_889781.1 CDS MSMEG_5544 NC_008596.1 5633446 5634195 R identified by match to protein family HMM PF00106; short chain dehydrogenase complement(5633446..5634195) Mycobacterium smegmatis str. MC2 155 4537111 YP_889782.1 CDS MSMEG_5545 NC_008596.1 5634240 5635106 R identified by match to protein family HMM PF01149; match to protein family HMM PF06831; formamidopyrimidine-DNA glycosylase complement(5634240..5635106) Mycobacterium smegmatis str. MC2 155 4535581 YP_889783.1 CDS MSMEG_5547 NC_008596.1 5635137 5636897 D hypothetical protein 5635137..5636897 Mycobacterium smegmatis str. MC2 155 4534979 YP_889784.1 CDS MSMEG_5546 NC_008596.1 5636862 5637251 R identified by match to protein family HMM PF04020; membrane spanning protein complement(5636862..5637251) Mycobacterium smegmatis str. MC2 155 4535050 YP_889785.1 CDS cobF NC_008596.1 5637258 5637998 R catalyzes the formation of precorrin 6x from precorrin 5; precorrin 6A synthase complement(5637258..5637998) Mycobacterium smegmatis str. MC2 155 4532151 YP_889786.1 CDS MSMEG_5549 NC_008596.1 5638116 5639345 D hypothetical protein 5638116..5639345 Mycobacterium smegmatis str. MC2 155 4533795 YP_889787.1 CDS MSMEG_5551 NC_008596.1 5640458 5641219 D identified by match to protein family HMM PF01740; stas domain-containing protein 5640458..5641219 Mycobacterium smegmatis str. MC2 155 4534896 YP_889788.1 CDS cheR NC_008596.1 5641267 5643117 D identified by match to protein family HMM PF00989; match to protein family HMM PF01739; match to protein family HMM PF03705; match to protein family HMM TIGR00229; chemotaxis protein CheR 5641267..5643117 Mycobacterium smegmatis str. MC2 155 4536288 YP_889789.1 CDS MSMEG_5552 NC_008596.1 5643114 5643251 R hypothetical protein complement(5643114..5643251) Mycobacterium smegmatis str. MC2 155 4535869 YP_889790.1 CDS MSMEG_5554 NC_008596.1 5643478 5644194 R identified by match to protein family HMM PF03861; ANTAR domain-containing protein complement(5643478..5644194) Mycobacterium smegmatis str. MC2 155 4533142 YP_889791.1 CDS MSMEG_5556 NC_008596.1 5645336 5646550 D identified by match to protein family HMM PF07690; MFS permease 5645336..5646550 Mycobacterium smegmatis str. MC2 155 4533809 YP_889792.1 CDS MSMEG_5557 NC_008596.1 5646557 5647120 R hypothetical protein complement(5646557..5647120) Mycobacterium smegmatis str. MC2 155 4532211 YP_889793.1 CDS MSMEG_5558 NC_008596.1 5647334 5647645 D hypothetical protein 5647334..5647645 Mycobacterium smegmatis str. MC2 155 4536302 YP_889794.1 CDS MSMEG_5559 NC_008596.1 5647818 5649233 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879; metabolite/sugar transporter 5647818..5649233 Mycobacterium smegmatis str. MC2 155 4533805 YP_889795.1 CDS MSMEG_5560 NC_008596.1 5649256 5649882 D hypothetical protein 5649256..5649882 Mycobacterium smegmatis str. MC2 155 4532507 YP_889796.1 CDS rnhA NC_008596.1 5649967 5650446 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 5649967..5650446 Mycobacterium smegmatis str. MC2 155 4531498 YP_889797.1 CDS MSMEG_5561 NC_008596.1 5650412 5650957 R identified by match to protein family HMM PF04982; HPP family protein complement(5650412..5650957) Mycobacterium smegmatis str. MC2 155 4537374 YP_889798.1 CDS MSMEG_5563 NC_008596.1 5651232 5652212 R identified by match to protein family HMM PF00165; match to protein family HMM PF01965; AraC family transcriptional regulator complement(5651232..5652212) Mycobacterium smegmatis str. MC2 155 4537155 YP_889799.1 CDS MSMEG_5564 NC_008596.1 5652298 5653074 D identified by similarity to SP:P16083; match to protein family HMM PF02525; NAD(P)H dehydrogenase, quinone family protein 5652298..5653074 Mycobacterium smegmatis str. MC2 155 4537396 YP_889800.1 CDS MSMEG_5565 NC_008596.1 5653075 5653701 R hypothetical protein complement(5653075..5653701) Mycobacterium smegmatis str. MC2 155 4534473 YP_889801.1 CDS MSMEG_5566 NC_008596.1 5653799 5654224 R identified by match to protein family HMM PF01047; transcriptional regulator complement(5653799..5654224) Mycobacterium smegmatis str. MC2 155 4530877 YP_889802.1 CDS MSMEG_5567 NC_008596.1 5654425 5655027 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(5654425..5655027) Mycobacterium smegmatis str. MC2 155 4532032 YP_889803.1 CDS MSMEG_5568 NC_008596.1 5655119 5655880 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; clavaldehyde dehydrogenase 5655119..5655880 Mycobacterium smegmatis str. MC2 155 4531376 YP_889804.1 CDS MSMEG_5569 NC_008596.1 5655917 5656684 D identified by match to protein family HMM PF00106; clavaldehyde dehydrogenase 5655917..5656684 Mycobacterium smegmatis str. MC2 155 4532559 YP_889805.1 CDS MSMEG_5570 NC_008596.1 5656824 5659091 R catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA and has been shown to have polymerase activity; ATP-dependent DNA ligase complement(5656824..5659091) Mycobacterium smegmatis str. MC2 155 4535131 YP_889806.1 CDS MSMEG_5571 NC_008596.1 5659133 5660218 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(5659133..5660218) Mycobacterium smegmatis str. MC2 155 4531817 YP_889807.1 CDS MSMEG_5572 NC_008596.1 5660234 5661112 R identified by match to protein family HMM PF00528; sugar ABC transporter permease complement(5660234..5661112) Mycobacterium smegmatis str. MC2 155 4532265 YP_889808.1 CDS MSMEG_5573 NC_008596.1 5661109 5662071 R identified by match to protein family HMM PF00528; sugar ABC transporter permease complement(5661109..5662071) Mycobacterium smegmatis str. MC2 155 4534293 YP_889809.1 CDS MSMEG_5574 NC_008596.1 5662068 5663411 R identified by match to protein family HMM PF01547; substrate binding protein complement(5662068..5663411) Mycobacterium smegmatis str. MC2 155 4536573 YP_889810.1 CDS MSMEG_5575 NC_008596.1 5663425 5664351 R identified by match to protein family HMM PF04198; repressor complement(5663425..5664351) Mycobacterium smegmatis str. MC2 155 4536972 YP_889811.1 CDS MSMEG_5576 NC_008596.1 5664415 5665851 D identified by match to protein family HMM PF01232; match to protein family HMM PF08125; D-mannonate oxidoreductase 5664415..5665851 Mycobacterium smegmatis str. MC2 155 4531557 YP_889812.1 CDS MSMEG_5577 NC_008596.1 5665848 5666768 D identified by match to protein family HMM PF00294; fructokinase 5665848..5666768 Mycobacterium smegmatis str. MC2 155 4534706 YP_889813.1 CDS MSMEG_5578 NC_008596.1 5666805 5668283 R hypothetical protein complement(5666805..5668283) Mycobacterium smegmatis str. MC2 155 4531299 YP_889814.1 CDS MSMEG_5579 NC_008596.1 5668343 5668813 R identified by match to protein family HMM PF01022; match to protein family HMM PF01047; MarR family transcriptional regulator complement(5668343..5668813) Mycobacterium smegmatis str. MC2 155 4537345 YP_889815.1 CDS MSMEG_5580 NC_008596.1 5668970 5669956 D identified by match to protein family HMM PF02735; match to protein family HMM TIGR02772; Ku protein 5668970..5669956 Mycobacterium smegmatis str. MC2 155 4537230 YP_889816.1 CDS MSMEG_5581 NC_008596.1 5669968 5670690 R identified by match to protein family HMM TIGR02206; hypothetical protein complement(5669968..5670690) Mycobacterium smegmatis str. MC2 155 4531464 YP_889817.1 CDS MSMEG_5582 NC_008596.1 5670763 5671227 R hypothetical protein complement(5670763..5671227) Mycobacterium smegmatis str. MC2 155 4533106 YP_889818.1 CDS MSMEG_5583 NC_008596.1 5671280 5673175 R identified by match to protein family HMM PF01844; match to protein family HMM PF02720; HNH endonuclease complement(5671280..5673175) Mycobacterium smegmatis str. MC2 155 4531063 YP_889819.1 CDS MSMEG_5584 NC_008596.1 5673254 5674048 D identified by match to protein family HMM PF00106; short chain dehydrogenase 5673254..5674048 Mycobacterium smegmatis str. MC2 155 4535385 YP_889820.1 CDS MSMEG_5586 NC_008596.1 5674061 5675137 D identified by match to protein family HMM PF01113; match to protein family HMM PF01408; hypothetical protein 5674061..5675137 Mycobacterium smegmatis str. MC2 155 4532146 YP_889821.1 CDS MSMEG_5585 NC_008596.1 5675106 5675636 R hypothetical protein complement(5675106..5675636) Mycobacterium smegmatis str. MC2 155 4531337 YP_889822.1 CDS MSMEG_5587 NC_008596.1 5675160 5675426 D hypothetical protein 5675160..5675426 Mycobacterium smegmatis str. MC2 155 4532418 YP_889823.1 CDS MSMEG_5588 NC_008596.1 5675545 5675724 D hypothetical protein 5675545..5675724 Mycobacterium smegmatis str. MC2 155 4534556 YP_889824.1 CDS MSMEG_5589 NC_008596.1 5675819 5677042 D identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197; manganese transporter MntH 5675819..5677042 Mycobacterium smegmatis str. MC2 155 4531382 YP_889825.1 CDS MSMEG_5591 NC_008596.1 5677043 5678101 D identified by match to protein family HMM PF05908; hypothetical protein 5677043..5678101 Mycobacterium smegmatis str. MC2 155 4537513 YP_889826.1 CDS MSMEG_5590 NC_008596.1 5678088 5679185 R ATP-dependent carboxylate-amine ligase; carboxylate-amine ligase complement(5678088..5679185) Mycobacterium smegmatis str. MC2 155 4531533 YP_889827.1 CDS MSMEG_5592 NC_008596.1 5679244 5680065 D hypothetical protein 5679244..5680065 Mycobacterium smegmatis str. MC2 155 4532404 YP_889828.1 CDS MSMEG_5593 NC_008596.1 5680074 5682029 R identified by match to protein family HMM PF00205; match to protein family HMM PF00355; match to protein family HMM PF02775; match to protein family HMM PF02776; pyruvate dehydrogenase complement(5680074..5682029) Mycobacterium smegmatis str. MC2 155 4532250 YP_889829.1 CDS MSMEG_5594 NC_008596.1 5682026 5683654 R identified by match to protein family HMM PF00355; match to protein family HMM PF01645; ferredoxin-dependent glutamate synthase complement(5682026..5683654) Mycobacterium smegmatis str. MC2 155 4535829 YP_889830.1 CDS MSMEG_5595 NC_008596.1 5683665 5684138 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(5683665..5684138) Mycobacterium smegmatis str. MC2 155 4533886 YP_889831.1 CDS MSMEG_5596 NC_008596.1 5684407 5685162 D identified by match to protein family HMM PF00106; oxidoreductase 5684407..5685162 Mycobacterium smegmatis str. MC2 155 4533194 YP_889832.1 CDS MSMEG_5597 NC_008596.1 5685226 5685846 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 5685226..5685846 Mycobacterium smegmatis str. MC2 155 4532373 YP_889833.1 CDS MSMEG_5599 NC_008596.1 5686048 5686182 R hypothetical protein complement(5686048..5686182) Mycobacterium smegmatis str. MC2 155 4535577 YP_889834.1 CDS MSMEG_5600 NC_008596.1 5686847 5687998 D hypothetical protein 5686847..5687998 Mycobacterium smegmatis str. MC2 155 4534294 YP_889835.1 CDS MSMEG_5601 NC_008596.1 5688013 5688570 D hypothetical protein 5688013..5688570 Mycobacterium smegmatis str. MC2 155 4537484 YP_889836.1 CDS MSMEG_5602 NC_008596.1 5688973 5689389 D hypothetical protein 5688973..5689389 Mycobacterium smegmatis str. MC2 155 4536509 YP_889837.1 CDS MSMEG_5603 NC_008596.1 5689444 5689782 D identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 5689444..5689782 Mycobacterium smegmatis str. MC2 155 4532514 YP_889838.1 CDS MSMEG_5604 NC_008596.1 5689743 5690408 D integral membrane protein 5689743..5690408 Mycobacterium smegmatis str. MC2 155 4531635 YP_889839.1 CDS MSMEG_5605 NC_008596.1 5690437 5691825 D identified by match to protein family HMM PF01654; cytochrome bd ubiquinol oxidase subunit I 5690437..5691825 Mycobacterium smegmatis str. MC2 155 4532171 YP_889840.1 CDS MSMEG_5606 NC_008596.1 5691822 5692820 D identified by match to protein family HMM PF02322; cytochrome bd-I oxidase subunit II 5691822..5692820 Mycobacterium smegmatis str. MC2 155 4536815 YP_889841.1 CDS MSMEG_5607 NC_008596.1 5693137 5693385 D hypothetical protein 5693137..5693385 Mycobacterium smegmatis str. MC2 155 4534388 YP_889842.1 CDS MSMEG_5608 NC_008596.1 5693487 5694701 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 5693487..5694701 Mycobacterium smegmatis str. MC2 155 4531274 YP_889843.1 CDS MSMEG_5609 NC_008596.1 5694705 5696228 D identified by match to protein family HMM PF03055; carotenoid oxygenase 5694705..5696228 Mycobacterium smegmatis str. MC2 155 4532710 YP_889844.1 CDS MSMEG_5610 NC_008596.1 5696228 5697178 D identified by match to protein family HMM PF01638; transcriptional regulator family protein 5696228..5697178 Mycobacterium smegmatis str. MC2 155 4536400 YP_889845.1 CDS MSMEG_5611 NC_008596.1 5697272 5697730 D identified by match to protein family HMM PF00011; spore protein 5697272..5697730 Mycobacterium smegmatis str. MC2 155 4532547 YP_889846.1 CDS MSMEG_5612 NC_008596.1 5697737 5698330 R identified by match to protein family HMM PF00583; amino-acid acetyltransferase complement(5697737..5698330) Mycobacterium smegmatis str. MC2 155 4532196 YP_889847.1 CDS MSMEG_5613 NC_008596.1 5698339 5698731 R transmembrane protein complement(5698339..5698731) Mycobacterium smegmatis str. MC2 155 4533297 YP_889848.1 CDS MSMEG_5615 NC_008596.1 5698778 5699224 D identified by match to protein family HMM PF06172; hypothetical protein 5698778..5699224 Mycobacterium smegmatis str. MC2 155 4531564 YP_889849.1 CDS MSMEG_5614 NC_008596.1 5699214 5699942 R identified by match to protein family HMM PF05853; hypothetical protein complement(5699214..5699942) Mycobacterium smegmatis str. MC2 155 4534194 YP_889850.1 CDS MSMEG_5616 NC_008596.1 5699957 5700727 R identified by match to protein family HMM PF00903; glyoxalase/bleomycin resistance protein/dioxygenase complement(5699957..5700727) Mycobacterium smegmatis str. MC2 155 4532626 YP_889851.1 CDS MSMEG_5617 NC_008596.1 5700826 5701302 R immunogenic protein MPT63 complement(5700826..5701302) Mycobacterium smegmatis str. MC2 155 4534043 YP_889852.1 CDS MSMEG_5618 NC_008596.1 5701411 5702439 R identified by match to protein family HMM PF00441; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(5701411..5702439) Mycobacterium smegmatis str. MC2 155 4531567 YP_889853.1 CDS MSMEG_5619 NC_008596.1 5702436 5703611 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase complement(5702436..5703611) Mycobacterium smegmatis str. MC2 155 4537429 YP_889854.1 CDS MSMEG_5620 NC_008596.1 5703608 5704387 R identified by match to protein family HMM PF00378; enoyl-CoA hydratase complement(5703608..5704387) Mycobacterium smegmatis str. MC2 155 4534076 YP_889855.1 CDS MSMEG_5621 NC_008596.1 5704384 5705304 R identified by match to protein family HMM PF00441; acyl-CoA dehydrogenase complement(5704384..5705304) Mycobacterium smegmatis str. MC2 155 4536123 YP_889856.1 CDS MSMEG_5622 NC_008596.1 5705301 5706458 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase complement(5705301..5706458) Mycobacterium smegmatis str. MC2 155 4535739 YP_889857.1 CDS MSMEG_5623 NC_008596.1 5706470 5707621 R identified by match to protein family HMM PF02515; L-carnitine dehydratase/bile acid-inducible protein F complement(5706470..5707621) Mycobacterium smegmatis str. MC2 155 4536205 YP_889858.1 CDS MSMEG_5624 NC_008596.1 5707618 5708538 R identified by match to protein family HMM PF00106; oxidoreductase, short chain dehydrogenase/reductase complement(5707618..5708538) Mycobacterium smegmatis str. MC2 155 4535000 YP_889859.1 CDS MSMEG_5625 NC_008596.1 5708555 5710393 R identified by match to protein family HMM PF01266; cyclododecanone monooxygenase complement(5708555..5710393) Mycobacterium smegmatis str. MC2 155 4531990 YP_889860.1 CDS MSMEG_5626 NC_008596.1 5710390 5711562 R identified by match to protein family HMM PF00296; luciferase complement(5710390..5711562) Mycobacterium smegmatis str. MC2 155 4535814 YP_889861.1 CDS MSMEG_5627 NC_008596.1 5711559 5712947 R identified by match to protein family HMM PF00355; Rieske (2Fe-2S) domain-containing protein complement(5711559..5712947) Mycobacterium smegmatis str. MC2 155 4533010 YP_889862.1 CDS MSMEG_5628 NC_008596.1 5712981 5713826 R identified by match to protein family HMM PF00106; oxidoreductase, short chain dehydrogenase/reductase complement(5712981..5713826) Mycobacterium smegmatis str. MC2 155 4533191 YP_889863.1 CDS MSMEG_5629 NC_008596.1 5713967 5715571 D hypothetical protein 5713967..5715571 Mycobacterium smegmatis str. MC2 155 4536074 YP_889864.1 CDS MSMEG_5630 NC_008596.1 5715578 5716315 D identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 5715578..5716315 Mycobacterium smegmatis str. MC2 155 4536324 YP_889865.1 CDS MSMEG_5631 NC_008596.1 5716317 5717849 D identified by match to protein family HMM PF00501; AMP-dependent synthetase/ligase 5716317..5717849 Mycobacterium smegmatis str. MC2 155 4533420 YP_889866.1 CDS MSMEG_5632 NC_008596.1 5717850 5718623 D identified by match to protein family HMM PF00106; oxidoreductase, short chain dehydrogenase/reductase 5717850..5718623 Mycobacterium smegmatis str. MC2 155 4536045 YP_889867.1 CDS MSMEG_5633 NC_008596.1 5718620 5720092 D identified by match to protein family HMM PF00501; feruloyl-CoA synthetase 5718620..5720092 Mycobacterium smegmatis str. MC2 155 4531657 YP_889868.1 CDS MSMEG_5634 NC_008596.1 5720095 5720538 R hypothetical protein complement(5720095..5720538) Mycobacterium smegmatis str. MC2 155 4532477 YP_889869.1 CDS MSMEG_5635 NC_008596.1 5720548 5720736 R hypothetical protein complement(5720548..5720736) Mycobacterium smegmatis str. MC2 155 4533936 YP_889870.1 CDS MSMEG_5636 NC_008596.1 5720762 5723137 R identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; P-type ATPase - metal cation transport complement(5720762..5723137) Mycobacterium smegmatis str. MC2 155 4532500 YP_889871.1 CDS MSMEG_5637 NC_008596.1 5723151 5724767 R identified by match to protein family HMM PF00144; penicillin-binding protein 4 complement(5723151..5724767) Mycobacterium smegmatis str. MC2 155 4537564 YP_889872.1 CDS MSMEG_5638 NC_008596.1 5724814 5725929 R metallo-beta-lactamase complement(5724814..5725929) Mycobacterium smegmatis str. MC2 155 4534790 YP_889873.1 CDS MSMEG_5639 NC_008596.1 5725931 5726662 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(5725931..5726662) Mycobacterium smegmatis str. MC2 155 4536499 YP_889874.1 CDS MSMEG_5640 NC_008596.1 5726689 5728815 R identified by match to protein family HMM PF06202; amylo-alpha-1,6-glucosidase complement(5726689..5728815) Mycobacterium smegmatis str. MC2 155 4533877 YP_889875.1 CDS MSMEG_5641 NC_008596.1 5728812 5729963 R identified by match to protein family HMM PF00534; glycoside hydrolase family protein complement(5728812..5729963) Mycobacterium smegmatis str. MC2 155 4536668 YP_889876.1 CDS MSMEG_5642 NC_008596.1 5730092 5731561 D identified by match to protein family HMM PF01039; acetyl-coenzyme a carboxylase carboxyl transferase 5730092..5731561 Mycobacterium smegmatis str. MC2 155 4533392 YP_889877.1 CDS MSMEG_5643 NC_008596.1 5731669 5732505 D hypothetical protein 5731669..5732505 Mycobacterium smegmatis str. MC2 155 4536415 YP_889878.1 CDS MSMEG_5644 NC_008596.1 5732558 5734564 R identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062; membrane protein complement(5732558..5734564) Mycobacterium smegmatis str. MC2 155 4535811 YP_889879.1 CDS MSMEG_5645 NC_008596.1 5734567 5735295 R hypothetical protein complement(5734567..5735295) Mycobacterium smegmatis str. MC2 155 4534252 YP_889880.1 CDS MSMEG_5646 NC_008596.1 5735881 5736054 D hypothetical protein 5735881..5736054 Mycobacterium smegmatis str. MC2 155 4537447 YP_889881.1 CDS MSMEG_5648 NC_008596.1 5736936 5737325 R hypothetical protein complement(5736936..5737325) Mycobacterium smegmatis str. MC2 155 4536353 YP_889882.1 CDS MSMEG_5649 NC_008596.1 5737445 5739058 R activates fatty acids by binding to coenzyme A; AMP-binding protein complement(5737445..5739058) Mycobacterium smegmatis str. MC2 155 4531308 YP_889883.1 CDS MSMEG_5650 NC_008596.1 5739055 5740743 R identified by match to protein family HMM PF00501; AMP-dependent synthetase/ligase complement(5739055..5740743) Mycobacterium smegmatis str. MC2 155 4534512 YP_889884.1 CDS MSMEG_5651 NC_008596.1 5740801 5741643 D identified by match to protein family HMM PF00196; LuxR family transcriptional regulator 5740801..5741643 Mycobacterium smegmatis str. MC2 155 4536398 YP_889885.1 CDS MSMEG_5652 NC_008596.1 5741657 5742577 R identified by match to protein family HMM PF00561; alpha/beta hydrolase complement(5741657..5742577) Mycobacterium smegmatis str. MC2 155 4533666 YP_889886.1 CDS MSMEG_5654 NC_008596.1 5742793 5743662 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 5742793..5743662 Mycobacterium smegmatis str. MC2 155 4537671 YP_889887.1 CDS MSMEG_5653 NC_008596.1 5743637 5745124 R identified by match to protein family HMM PF02133; cytosine/purines uracil thiamine allantoin permease complement(5743637..5745124) Mycobacterium smegmatis str. MC2 155 4532400 YP_889888.1 CDS MSMEG_5655 NC_008596.1 5745137 5745982 R identified by match to protein family HMM PF00795; carbon-nitrogen hydrolase complement(5745137..5745982) Mycobacterium smegmatis str. MC2 155 4535619 YP_889889.1 CDS hisD NC_008596.1 5745996 5747351 R identified by match to protein family HMM PF00815; histidinol dehydrogenase complement(5745996..5747351) Mycobacterium smegmatis str. MC2 155 4535060 YP_889890.1 CDS MSMEG_5657 NC_008596.1 5747436 5748392 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(5747436..5748392) Mycobacterium smegmatis str. MC2 155 4534539 YP_889891.1 CDS MSMEG_5658 NC_008596.1 5748411 5749523 D identified by match to protein family HMM PF00561; match to protein family HMM PF06441; epoxide hydrolase 5748411..5749523 Mycobacterium smegmatis str. MC2 155 4534503 YP_889892.1 CDS MSMEG_5659 NC_008596.1 5749605 5751437 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein complement(5749605..5751437) Mycobacterium smegmatis str. MC2 155 4535068 YP_889893.1 CDS MSMEG_5660 NC_008596.1 5751434 5753386 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein complement(5751434..5753386) Mycobacterium smegmatis str. MC2 155 4537216 YP_889894.1 CDS MSMEG_5661 NC_008596.1 5753419 5755335 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein complement(5753419..5755335) Mycobacterium smegmatis str. MC2 155 4535346 YP_889895.1 CDS prrA NC_008596.1 5755451 5756161 D identified by similarity to SP:Q10531; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator PrrA 5755451..5756161 Mycobacterium smegmatis str. MC2 155 4535494 YP_889896.1 CDS MSMEG_5663 NC_008596.1 5756171 5757511 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor-type histidine kinase PrrB 5756171..5757511 Mycobacterium smegmatis str. MC2 155 4537446 YP_889897.1 CDS MSMEG_5664 NC_008596.1 5757592 5757954 R identified by match to protein family HMM PF00254; hypothetical protein complement(5757592..5757954) Mycobacterium smegmatis str. MC2 155 4537097 YP_889898.1 CDS MSMEG_5665 NC_008596.1 5757938 5758285 R hypothetical protein complement(5757938..5758285) Mycobacterium smegmatis str. MC2 155 4532286 YP_889899.1 CDS MSMEG_5666 NC_008596.1 5757986 5758234 D hypothetical protein 5757986..5758234 Mycobacterium smegmatis str. MC2 155 4533727 YP_889900.1 CDS MSMEG_5667 NC_008596.1 5758241 5759800 D phytoene dehydrogenase 5758241..5759800 Mycobacterium smegmatis str. MC2 155 4535881 YP_889901.1 CDS MSMEG_5669 NC_008596.1 5759843 5760928 D identified by similarity to GB:CAD18826.1; ISMsm2, transposase 5759843..5760928 Mycobacterium smegmatis str. MC2 155 4535835 YP_889902.1 CDS MSMEG_5668 NC_008596.1 5760925 5761374 R identified by match to protein family HMM PF01047; transcriptional regulator complement(5760925..5761374) Mycobacterium smegmatis str. MC2 155 4532502 YP_889903.1 CDS MSMEG_5670 NC_008596.1 5761364 5762821 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; efflux membrane protein complement(5761364..5762821) Mycobacterium smegmatis str. MC2 155 4533862 YP_889904.1 CDS MSMEG_5671 NC_008596.1 5762879 5763358 D identified by match to protein family HMM PF04073; prolyl-tRNA synthetase 5762879..5763358 Mycobacterium smegmatis str. MC2 155 4531981 YP_889905.1 CDS gltA NC_008596.1 5763378 5764682 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase complement(5763378..5764682) Mycobacterium smegmatis str. MC2 155 4537175 YP_889906.1 CDS MSMEG_5673 NC_008596.1 5764801 5765442 R identified by match to protein family HMM PF00440; transcriptional regulator complement(5764801..5765442) Mycobacterium smegmatis str. MC2 155 4531708 YP_889907.1 CDS MSMEG_5674 NC_008596.1 5765508 5766815 R identified by match to protein family HMM PF05977; match to protein family HMM PF07690; membrane transporter complement(5765508..5766815) Mycobacterium smegmatis str. MC2 155 4537132 YP_889908.1 CDS pdxH NC_008596.1 5766819 5767511 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase complement(5766819..5767511) Mycobacterium smegmatis str. MC2 155 4535528 YP_889909.1 CDS MSMEG_5676 NC_008596.1 5767553 5768686 D forms citrate from oxaloacetate and acetyl-CoA; functions in TCA cycle; citrate synthase 2 5767553..5768686 Mycobacterium smegmatis str. MC2 155 4536910 YP_889910.1 CDS MSMEG_5677 NC_008596.1 5768683 5769285 D hypothetical protein 5768683..5769285 Mycobacterium smegmatis str. MC2 155 4535380 YP_889911.1 CDS MSMEG_5678 NC_008596.1 5769287 5769673 R identified by match to protein family HMM PF00903; glyoxalase/bleomycin resistance protein/dioxygenase complement(5769287..5769673) Mycobacterium smegmatis str. MC2 155 4534077 YP_889912.1 CDS MSMEG_5679 NC_008596.1 5769670 5769984 R DNA-binding protein complement(5769670..5769984) Mycobacterium smegmatis str. MC2 155 4533263 YP_889913.1 CDS MSMEG_5680 NC_008596.1 5770134 5770589 D identified by match to protein family HMM PF00903; glyoxalase 5770134..5770589 Mycobacterium smegmatis str. MC2 155 4530909 YP_889914.1 CDS MSMEG_5681 NC_008596.1 5770593 5772266 R identified by match to protein family HMM PF00037; match to protein family HMM PF07992; ferredoxin/ferredoxin--NADP reductase complement(5770593..5772266) Mycobacterium smegmatis str. MC2 155 4536947 YP_889915.1 CDS MSMEG_5682 NC_008596.1 5772279 5773256 R hypothetical protein complement(5772279..5773256) Mycobacterium smegmatis str. MC2 155 4531587 YP_889916.1 CDS map NC_008596.1 5773416 5774180 D identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase 5773416..5774180 Mycobacterium smegmatis str. MC2 155 4537296 YP_889917.1 CDS MSMEG_5684 NC_008596.1 5774274 5775386 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; phosphoserine aminotransferase 5774274..5775386 Mycobacterium smegmatis str. MC2 155 4535455 YP_889918.1 CDS MSMEG_5685 NC_008596.1 5775478 5776308 D DNA-binding protein 5775478..5776308 Mycobacterium smegmatis str. MC2 155 4537431 YP_889919.1 CDS MSMEG_5686 NC_008596.1 5776322 5776597 R hypothetical protein complement(5776322..5776597) Mycobacterium smegmatis str. MC2 155 4533021 YP_889920.1 CDS MSMEG_5687 NC_008596.1 5776618 5777451 R identified by match to protein family HMM PF00588; 23s ribosomal RNA methyltransferase complement(5776618..5777451) Mycobacterium smegmatis str. MC2 155 4535303 YP_889921.1 CDS MSMEG_5688 NC_008596.1 5777448 5777879 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(5777448..5777879) Mycobacterium smegmatis str. MC2 155 4537102 YP_889922.1 CDS MSMEG_5689 NC_008596.1 5777961 5778230 D hypothetical protein 5777961..5778230 Mycobacterium smegmatis str. MC2 155 4532338 YP_889923.1 CDS MSMEG_5690 NC_008596.1 5778239 5778691 D hypothetical protein 5778239..5778691 Mycobacterium smegmatis str. MC2 155 4533437 YP_889924.1 CDS MSMEG_5691 NC_008596.1 5778712 5779497 R hypothetical protein complement(5778712..5779497) Mycobacterium smegmatis str. MC2 155 4531019 YP_889925.1 CDS MSMEG_5692 NC_008596.1 5779494 5779880 R hypothetical protein complement(5779494..5779880) Mycobacterium smegmatis str. MC2 155 4534214 YP_889926.1 CDS MSMEG_5693 NC_008596.1 5779698 5781245 D identified by match to protein family HMM PF07690; transporter major facilitator family protein 5779698..5781245 Mycobacterium smegmatis str. MC2 155 4533240 YP_889927.1 CDS MSMEG_5694 NC_008596.1 5781242 5781730 D hypothetical protein 5781242..5781730 Mycobacterium smegmatis str. MC2 155 4533816 YP_889928.1 CDS MSMEG_5695 NC_008596.1 5781741 5782766 R glutathione S-transferase complement(5781741..5782766) Mycobacterium smegmatis str. MC2 155 4535329 YP_889929.1 CDS MSMEG_5696 NC_008596.1 5782812 5783261 R identified by match to protein family HMM PF00313; cold-shock DNA-binding domain-containing protein complement(5782812..5783261) Mycobacterium smegmatis str. MC2 155 4534399 YP_889930.1 CDS MSMEG_5697 NC_008596.1 5783385 5783795 D identified by match to protein family HMM PF03733; hypothetical protein 5783385..5783795 Mycobacterium smegmatis str. MC2 155 4531685 YP_889931.1 CDS moaA NC_008596.1 5783792 5784877 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 5783792..5784877 Mycobacterium smegmatis str. MC2 155 4531242 YP_889932.1 CDS MSMEG_5699 NC_008596.1 5784902 5785144 D identified by match to protein family HMM PF02597; ThiS family protein 5784902..5785144 Mycobacterium smegmatis str. MC2 155 4531760 YP_889933.1 CDS MSMEG_5700 NC_008596.1 5785578 5787038 D identified by match to protein family HMM PF06737; hypothetical protein 5785578..5787038 Mycobacterium smegmatis str. MC2 155 4532764 YP_889934.1 CDS moaE NC_008596.1 5787056 5787484 R identified by match to protein family HMM PF02391; molybdopterin converting factor subunit 2 complement(5787056..5787484) Mycobacterium smegmatis str. MC2 155 4532139 YP_889935.1 CDS MSMEG_5702 NC_008596.1 5787521 5788018 R identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; molybdenum cofactor synthesis domain-containing protein complement(5787521..5788018) Mycobacterium smegmatis str. MC2 155 4537154 YP_889936.1 CDS moaC NC_008596.1 5787997 5788470 R MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC complement(5787997..5788470) Mycobacterium smegmatis str. MC2 155 4536819 YP_889937.1 CDS MSMEG_5704 NC_008596.1 5788473 5788670 R hypothetical protein complement(5788473..5788670) Mycobacterium smegmatis str. MC2 155 4530925 YP_889938.1 CDS MSMEG_5705 NC_008596.1 5788729 5790984 D hypothetical protein 5788729..5790984 Mycobacterium smegmatis str. MC2 155 4533988 YP_889939.1 CDS MSMEG_5706 NC_008596.1 5791025 5792782 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; DNA or RNA helicase of superfamily protein II 5791025..5792782 Mycobacterium smegmatis str. MC2 155 4531396 YP_889940.1 CDS MSMEG_5707 NC_008596.1 5792803 5793156 R identified by match to protein family HMM PF07883; cupin complement(5792803..5793156) Mycobacterium smegmatis str. MC2 155 4531209 YP_889941.1 CDS MSMEG_5708 NC_008596.1 5793234 5793848 R hypothetical protein complement(5793234..5793848) Mycobacterium smegmatis str. MC2 155 4536217 YP_889942.1 CDS MSMEG_5709 NC_008596.1 5793898 5794431 R hypothetical protein complement(5793898..5794431) Mycobacterium smegmatis str. MC2 155 4537576 YP_889943.1 CDS MSMEG_5710 NC_008596.1 5794807 5795331 R hypothetical protein complement(5794807..5795331) Mycobacterium smegmatis str. MC2 155 4533520 YP_889944.1 CDS MSMEG_5711 NC_008596.1 5795681 5796355 R identified by match to protein family HMM PF00106; short chain dehydrogenase complement(5795681..5796355) Mycobacterium smegmatis str. MC2 155 4534851 YP_889945.1 CDS MSMEG_5713 NC_008596.1 5796496 5797728 D identified by match to protein family HMM PF06779; match to protein family HMM PF07690; major facilitator family protein transporter 5796496..5797728 Mycobacterium smegmatis str. MC2 155 4534179 YP_889946.1 CDS MSMEG_5712 NC_008596.1 5797558 5798490 R identified by match to protein family HMM PF00126; LysR family transcriptional regulator complement(5797558..5798490) Mycobacterium smegmatis str. MC2 155 4531315 YP_889947.1 CDS MSMEG_5714 NC_008596.1 5798619 5799317 D identified by match to protein family HMM PF00106; short-chain dehydrogenase/reductase SDR 5798619..5799317 Mycobacterium smegmatis str. MC2 155 4537005 YP_889948.1 CDS MSMEG_5716 NC_008596.1 5799304 5799669 D hypothetical protein 5799304..5799669 Mycobacterium smegmatis str. MC2 155 4535362 YP_889949.1 CDS MSMEG_5715 NC_008596.1 5799650 5800642 R identified by match to protein family HMM PF00296; hypothetical protein complement(5799650..5800642) Mycobacterium smegmatis str. MC2 155 4536860 YP_889950.1 CDS MSMEG_5717 NC_008596.1 5800752 5801177 D identified by match to protein family HMM PF01243; pyridoxamine 5'-phosphate oxidase 5800752..5801177 Mycobacterium smegmatis str. MC2 155 4535755 YP_889951.1 CDS MSMEG_5718 NC_008596.1 5801244 5801774 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(5801244..5801774) Mycobacterium smegmatis str. MC2 155 4531462 YP_889952.1 CDS MSMEG_5719 NC_008596.1 5801864 5803072 D identified by match to protein family HMM PF01494; oxidoreductase 5801864..5803072 Mycobacterium smegmatis str. MC2 155 4532584 YP_889953.1 CDS MSMEG_5720 NC_008596.1 5803163 5805325 R identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; 3-hydroxyacyl-CoA dehydrogenase complement(5803163..5805325) Mycobacterium smegmatis str. MC2 155 4531617 YP_889954.1 CDS MSMEG_5721 NC_008596.1 5805343 5806554 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(5805343..5806554) Mycobacterium smegmatis str. MC2 155 4535747 YP_889955.1 CDS MSMEG_5722 NC_008596.1 5806701 5806889 R hypothetical protein complement(5806701..5806889) Mycobacterium smegmatis str. MC2 155 4532770 YP_889956.1 CDS MSMEG_5723 NC_008596.1 5807129 5807560 R identified by match to protein family HMM PF01042; endoribonuclease L-psp family protein complement(5807129..5807560) Mycobacterium smegmatis str. MC2 155 4533239 YP_889957.1 CDS MSMEG_5724 NC_008596.1 5807649 5808116 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 5807649..5808116 Mycobacterium smegmatis str. MC2 155 4534234 YP_889958.1 CDS MSMEG_5725 NC_008596.1 5808140 5809312 D identified by match to protein family HMM PF00155; match to protein family HMM PF01212; aminotransferase 5808140..5809312 Mycobacterium smegmatis str. MC2 155 4533073 YP_889959.1 CDS MSMEG_5726 NC_008596.1 5809341 5810558 D hypothetical protein 5809341..5810558 Mycobacterium smegmatis str. MC2 155 4536034 YP_889960.1 CDS alc NC_008596.1 5810572 5811534 D catalyzes the formation of S-ureidoglycolate and urea from allantoate; allantoicase 5810572..5811534 Mycobacterium smegmatis str. MC2 155 4531367 YP_889961.1 CDS MSMEG_5728 NC_008596.1 5811531 5812430 D identified by match to protein family HMM PF01522; polysaccharide deacetylase 5811531..5812430 Mycobacterium smegmatis str. MC2 155 4531244 YP_889962.1 CDS MSMEG_5729 NC_008596.1 5812505 5813212 R identified by match to protein family HMM PF01177; hydantoin racemase complement(5812505..5813212) Mycobacterium smegmatis str. MC2 155 4537049 YP_889963.1 CDS MSMEG_5730 NC_008596.1 5813209 5814771 R identified by match to protein family HMM PF02133; permease for cytosine/purines, uracil, thiamine, allantoin transporter complement(5813209..5814771) Mycobacterium smegmatis str. MC2 155 4534271 YP_889964.1 CDS MSMEG_5731 NC_008596.1 5814846 5815541 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator complement(5814846..5815541) Mycobacterium smegmatis str. MC2 155 4537044 YP_889965.1 CDS MSMEG_5732 NC_008596.1 5815587 5816507 R identified by match to protein family HMM PF00296; monooxygenase complement(5815587..5816507) Mycobacterium smegmatis str. MC2 155 4533662 YP_889966.1 CDS MSMEG_5733 NC_008596.1 5816547 5817425 R identified by match to protein family HMM PF00582; universal stress protein family protein complement(5816547..5817425) Mycobacterium smegmatis str. MC2 155 4531201 YP_889967.1 CDS MSMEG_5734 NC_008596.1 5817499 5818581 R identified by match to protein family HMM PF02515; alpha-methylacyl-CoA racemase complement(5817499..5818581) Mycobacterium smegmatis str. MC2 155 4536193 YP_889968.1 CDS MSMEG_5735 NC_008596.1 5818600 5820267 D identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; indole-3-pyruvate decarboxylase 5818600..5820267 Mycobacterium smegmatis str. MC2 155 4533670 YP_889969.1 CDS MSMEG_5736 NC_008596.1 5820278 5820718 R identified by match to protein family HMM PF03364; cyclase/dehydrase complement(5820278..5820718) Mycobacterium smegmatis str. MC2 155 4532178 YP_889970.1 CDS MSMEG_5738 NC_008596.1 5820751 5821098 D hypothetical protein 5820751..5821098 Mycobacterium smegmatis str. MC2 155 4534697 YP_889971.1 CDS MSMEG_5737 NC_008596.1 5821095 5821262 R hypothetical protein complement(5821095..5821262) Mycobacterium smegmatis str. MC2 155 4535766 YP_889972.1 CDS MSMEG_5739 NC_008596.1 5821317 5824838 D identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746; long-chain fatty-acid--CoA ligase 5821317..5824838 Mycobacterium smegmatis str. MC2 155 4535433 YP_889973.1 CDS MSMEG_5740 NC_008596.1 5824860 5825105 R hypothetical protein complement(5824860..5825105) Mycobacterium smegmatis str. MC2 155 4532697 YP_889974.1 CDS MSMEG_5741 NC_008596.1 5825153 5825788 R identified by match to protein family HMM PF02698; hypothetical protein complement(5825153..5825788) Mycobacterium smegmatis str. MC2 155 4530966 YP_889975.1 CDS MSMEG_5742 NC_008596.1 5825819 5826817 R identified by match to protein family HMM PF01553; acyltransferase domain-containing protein complement(5825819..5826817) Mycobacterium smegmatis str. MC2 155 4532632 YP_889976.1 CDS MSMEG_5743 NC_008596.1 5826814 5827632 R identified by match to protein family HMM PF01734; patatin complement(5826814..5827632) Mycobacterium smegmatis str. MC2 155 4537118 YP_889977.1 CDS gvpK NC_008596.1 5827650 5827940 R identified by match to protein family HMM PF05121; gas vesicle protein K complement(5827650..5827940) Mycobacterium smegmatis str. MC2 155 4533922 YP_889978.1 CDS MSMEG_5745 NC_008596.1 5827940 5828140 R identified by match to protein family HMM PF00741; gas vesicle synthesis protein complement(5827940..5828140) Mycobacterium smegmatis str. MC2 155 4530840 YP_889979.1 CDS MSMEG_5746 NC_008596.1 5828137 5828853 R identified by match to protein family HMM PF06386; gas vesicle protein complement(5828137..5828853) Mycobacterium smegmatis str. MC2 155 4533535 YP_889980.1 CDS MSMEG_5747 NC_008596.1 5828870 5829433 R hypothetical protein complement(5828870..5829433) Mycobacterium smegmatis str. MC2 155 4533833 YP_889981.1 CDS MSMEG_5748 NC_008596.1 5829490 5830131 R hypothetical protein complement(5829490..5830131) Mycobacterium smegmatis str. MC2 155 4531716 YP_889982.1 CDS MSMEG_5749 NC_008596.1 5830140 5830304 R hypothetical protein complement(5830140..5830304) Mycobacterium smegmatis str. MC2 155 4533821 YP_889983.1 CDS MSMEG_5750 NC_008596.1 5830307 5830420 R hypothetical protein complement(5830307..5830420) Mycobacterium smegmatis str. MC2 155 4534325 YP_889984.1 CDS MSMEG_5751 NC_008596.1 5830537 5830830 R adhesin complement(5830537..5830830) Mycobacterium smegmatis str. MC2 155 4534409 YP_889985.1 CDS MSMEG_5753 NC_008596.1 5831541 5832110 D identified by match to protein family HMM PF00149; serine/threonine specific protein phosphatase 5831541..5832110 Mycobacterium smegmatis str. MC2 155 4537379 YP_889986.1 CDS MSMEG_5752 NC_008596.1 5832107 5832586 R hypothetical protein complement(5832107..5832586) Mycobacterium smegmatis str. MC2 155 4535882 YP_889987.1 CDS MSMEG_5754 NC_008596.1 5832749 5833963 D identified by match to protein family HMM PF00589; gp41 protein 5832749..5833963 Mycobacterium smegmatis str. MC2 155 4533358 YP_889988.1 CDS MSMEG_5759 NC_008596.1 5834677 5835828 R PE family protein complement(5834677..5835828) Mycobacterium smegmatis str. MC2 155 4533554 YP_889989.1 CDS MSMEG_5760 NC_008596.1 5836135 5837526 D identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 5836135..5837526 Mycobacterium smegmatis str. MC2 155 4533848 YP_889990.1 CDS MSMEG_5761 NC_008596.1 5837607 5838014 D identified by match to protein family HMM PF07883; cupin 5837607..5838014 Mycobacterium smegmatis str. MC2 155 4531159 YP_889991.1 CDS MSMEG_5762 NC_008596.1 5838020 5838943 D identified by match to protein family HMM PF00107; zinc-binding oxidoreductase 5838020..5838943 Mycobacterium smegmatis str. MC2 155 4536140 YP_889992.1 CDS MSMEG_5763 NC_008596.1 5838945 5839619 D hypothetical protein 5838945..5839619 Mycobacterium smegmatis str. MC2 155 4534552 YP_889993.1 CDS MSMEG_5764 NC_008596.1 5839631 5840230 D identified by match to protein family HMM PF01966; cyanamide hydratase 5839631..5840230 Mycobacterium smegmatis str. MC2 155 4535539 YP_889994.1 CDS MSMEG_5765 NC_008596.1 5840238 5840603 R identified by match to protein family HMM PF01152; globin complement(5840238..5840603) Mycobacterium smegmatis str. MC2 155 4535898 YP_889995.1 CDS MSMEG_5766 NC_008596.1 5840791 5841132 D identified by match to protein family HMM PF05305; hypothetical protein 5840791..5841132 Mycobacterium smegmatis str. MC2 155 4532657 YP_889996.1 CDS MSMEG_5767 NC_008596.1 5841139 5842152 R hypothetical protein complement(5841139..5842152) Mycobacterium smegmatis str. MC2 155 4533546 YP_889997.1 CDS MSMEG_5768 NC_008596.1 5842231 5842815 D hypothetical protein 5842231..5842815 Mycobacterium smegmatis str. MC2 155 4536186 YP_889998.1 CDS MSMEG_5769 NC_008596.1 5842827 5843261 R hypothetical protein complement(5842827..5843261) Mycobacterium smegmatis str. MC2 155 4534155 YP_889999.1 CDS MSMEG_5770 NC_008596.1 5843430 5843888 R hypothetical protein complement(5843430..5843888) Mycobacterium smegmatis str. MC2 155 4536318 YP_890000.1 CDS MSMEG_5771 NC_008596.1 5843975 5844388 R hypothetical protein complement(5843975..5844388) Mycobacterium smegmatis str. MC2 155 4532501 YP_890001.1 CDS MSMEG_5773 NC_008596.1 5844594 5845598 D identified by match to protein family HMM PF03405; fatty acid desaturase 5844594..5845598 Mycobacterium smegmatis str. MC2 155 4533322 YP_890002.1 CDS MSMEG_5772 NC_008596.1 5845429 5845887 R cytospin-A complement(5845429..5845887) Mycobacterium smegmatis str. MC2 155 4533141 YP_890003.1 CDS MSMEG_5774 NC_008596.1 5845595 5846764 D identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737; tRNA-dihydrouridine synthase 5845595..5846764 Mycobacterium smegmatis str. MC2 155 4531425 YP_890004.1 CDS MSMEG_5775 NC_008596.1 5847201 5849369 D identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; LytR/CpsA/Psr family protein 5847201..5849369 Mycobacterium smegmatis str. MC2 155 4535683 YP_890005.1 CDS phoU NC_008596.1 5849446 5850114 D identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transporter regulatory protein PhoU 5849446..5850114 Mycobacterium smegmatis str. MC2 155 4533325 YP_890006.1 CDS MSMEG_5777 NC_008596.1 5850116 5850631 R identified by match to protein family HMM PF01047; transcriptional regulator complement(5850116..5850631) Mycobacterium smegmatis str. MC2 155 4532063 YP_890007.1 CDS MSMEG_5778 NC_008596.1 5850730 5851704 D identified by match to protein family HMM PF00107; alcohol dehydrogenase 5850730..5851704 Mycobacterium smegmatis str. MC2 155 4536454 YP_890008.1 CDS pstB NC_008596.1 5851717 5852493 R identified by match to protein family HMM PF00005; match to protein family HMM TIGR00972; phosphate ABC transporter ATP-binding protein complement(5851717..5852493) Mycobacterium smegmatis str. MC2 155 4536762 YP_890009.1 CDS pstA NC_008596.1 5852502 5853428 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease complement(5852502..5853428) Mycobacterium smegmatis str. MC2 155 4534184 YP_890010.1 CDS pstC NC_008596.1 5853425 5854480 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease complement(5853425..5854480) Mycobacterium smegmatis str. MC2 155 4535534 YP_890011.1 CDS pstS NC_008596.1 5854529 5855665 R identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975; phosphate ABC transporter substrate-binding protein complement(5854529..5855665) Mycobacterium smegmatis str. MC2 155 4533096 YP_890012.1 CDS MSMEG_5784 NC_008596.1 5856707 5857492 R identified by match to protein family HMM PF00486; transcriptional regulatory protein complement(5856707..5857492) Mycobacterium smegmatis str. MC2 155 4536659 YP_890013.1 CDS MSMEG_5785 NC_008596.1 5857658 5858473 D hypothetical protein 5857658..5858473 Mycobacterium smegmatis str. MC2 155 4535348 YP_890014.1 CDS MSMEG_5786 NC_008596.1 5858470 5858934 D identified by match to protein family HMM PF00085; thiredoxin 5858470..5858934 Mycobacterium smegmatis str. MC2 155 4532897 YP_890015.1 CDS MSMEG_5787 NC_008596.1 5858967 5859149 R hypothetical protein complement(5858967..5859149) Mycobacterium smegmatis str. MC2 155 4535904 YP_890016.1 CDS MSMEG_5788 NC_008596.1 5859148 5859627 D integral membrane protein 5859148..5859627 Mycobacterium smegmatis str. MC2 155 4533158 YP_890017.1 CDS MSMEG_5789 NC_008596.1 5859664 5860497 D identified by match to protein family HMM PF00581; thiosulfate sulfurtransferase 5859664..5860497 Mycobacterium smegmatis str. MC2 155 4533131 YP_890018.1 CDS MSMEG_5790 NC_008596.1 5860529 5860801 D identified by match to protein family HMM PF07210; SseC protein 5860529..5860801 Mycobacterium smegmatis str. MC2 155 4534689 YP_890019.1 CDS MSMEG_5791 NC_008596.1 5860943 5861041 D hypothetical protein 5860943..5861041 Mycobacterium smegmatis str. MC2 155 4536615 YP_890020.1 CDS MSMEG_5792 NC_008596.1 5861038 5861694 D hypothetical protein 5861038..5861694 Mycobacterium smegmatis str. MC2 155 4535702 YP_890021.1 CDS MSMEG_5793 NC_008596.1 5861703 5861984 D hypothetical protein 5861703..5861984 Mycobacterium smegmatis str. MC2 155 4531250 YP_890022.1 CDS MSMEG_5794 NC_008596.1 5862063 5862440 D hypothetical protein 5862063..5862440 Mycobacterium smegmatis str. MC2 155 4537210 YP_890023.1 CDS MSMEG_5795 NC_008596.1 5862693 5863562 R catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase complement(5862693..5863562) Mycobacterium smegmatis str. MC2 155 4532814 YP_890024.1 CDS MSMEG_5796 NC_008596.1 5863663 5864742 D identified by match to protein family HMM PF01571; glycine cleavage T-protein (aminomethyl transferase) 5863663..5864742 Mycobacterium smegmatis str. MC2 155 4531622 YP_890025.1 CDS MSMEG_5797 NC_008596.1 5865007 5865180 D hypothetical protein 5865007..5865180 Mycobacterium smegmatis str. MC2 155 4530962 YP_890026.1 CDS purM NC_008596.1 5865211 5866293 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(5865211..5866293) Mycobacterium smegmatis str. MC2 155 4531413 YP_890027.1 CDS MSMEG_5799 NC_008596.1 5866339 5867736 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; nucleoside-diphosphate-sugar epimerase 5866339..5867736 Mycobacterium smegmatis str. MC2 155 4534208 YP_890028.1 CDS purF NC_008596.1 5867744 5869279 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(5867744..5869279) Mycobacterium smegmatis str. MC2 155 4537244 YP_890029.1 CDS MSMEG_5801 NC_008596.1 5869361 5870710 R identified by match to protein family HMM PF01494; hydroxylase complement(5869361..5870710) Mycobacterium smegmatis str. MC2 155 4537624 YP_890030.1 CDS MSMEG_5802 NC_008596.1 5870893 5871624 D identified by match to protein family HMM PF00106; oxidoreductase, short chain dehydrogenase/reductase 5870893..5871624 Mycobacterium smegmatis str. MC2 155 4536320 YP_890031.1 CDS MSMEG_5803 NC_008596.1 5871708 5872067 D hypothetical protein 5871708..5872067 Mycobacterium smegmatis str. MC2 155 4531517 YP_890032.1 CDS MSMEG_5804 NC_008596.1 5872064 5872759 D hypothetical protein 5872064..5872759 Mycobacterium smegmatis str. MC2 155 4537116 YP_890033.1 CDS MSMEG_5805 NC_008596.1 5872756 5872902 D hypothetical protein 5872756..5872902 Mycobacterium smegmatis str. MC2 155 4532736 YP_890034.1 CDS MSMEG_5806 NC_008596.1 5872991 5873104 R hypothetical protein complement(5872991..5873104) Mycobacterium smegmatis str. MC2 155 4536552 YP_890035.1 CDS MSMEG_5807 NC_008596.1 5873134 5874081 D identified by match to protein family HMM PF00005; D-methionine transport ATP-binding protein MetN 5873134..5874081 Mycobacterium smegmatis str. MC2 155 4530919 YP_890036.1 CDS MSMEG_5808 NC_008596.1 5874133 5874816 D identified by match to protein family HMM PF00528; binding-protein-dependent transporters inner membrane component 5874133..5874816 Mycobacterium smegmatis str. MC2 155 4532982 YP_890037.1 CDS MSMEG_5809 NC_008596.1 5874832 5875731 D identified by match to protein family HMM PF03180; lipoprotein YaeC 5874832..5875731 Mycobacterium smegmatis str. MC2 155 4534804 YP_890038.1 CDS MSMEG_5810 NC_008596.1 5875728 5877137 D monooxygenase 5875728..5877137 Mycobacterium smegmatis str. MC2 155 4537276 YP_890039.1 CDS MSMEG_5811 NC_008596.1 5877168 5877794 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(5877168..5877794) Mycobacterium smegmatis str. MC2 155 4531025 YP_890040.1 CDS MSMEG_5812 NC_008596.1 5877928 5878758 D identified by match to protein family HMM PF00106; short chain dehydrogenase 5877928..5878758 Mycobacterium smegmatis str. MC2 155 4537328 YP_890041.1 CDS MSMEG_5813 NC_008596.1 5878755 5879558 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; carveol dehydrogenase 5878755..5879558 Mycobacterium smegmatis str. MC2 155 4533804 YP_890042.1 CDS pcaC NC_008596.1 5879581 5880393 D identified by match to protein family HMM PF02627; hypothetical protein 5879581..5880393 Mycobacterium smegmatis str. MC2 155 4531937 YP_890043.1 CDS MSMEG_5815 NC_008596.1 5880390 5881853 D identified by match to protein family HMM PF00171; betaine aldehyde dehydrogenase 5880390..5881853 Mycobacterium smegmatis str. MC2 155 4535625 YP_890044.1 CDS MSMEG_5816 NC_008596.1 5882145 5883410 D hypothetical protein 5882145..5883410 Mycobacterium smegmatis str. MC2 155 4533105 YP_890045.1 CDS MSMEG_5817 NC_008596.1 5883420 5883806 R hypothetical protein complement(5883420..5883806) Mycobacterium smegmatis str. MC2 155 4534018 YP_890046.1 CDS MSMEG_5818 NC_008596.1 5883823 5885037 D identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor Mce family protein 5883823..5885037 Mycobacterium smegmatis str. MC2 155 4536374 YP_890047.1 CDS MSMEG_5819 NC_008596.1 5885077 5885499 D identified by match to protein family HMM PF01243; pyridoxamine 5'-phosphate oxidase 5885077..5885499 Mycobacterium smegmatis str. MC2 155 4536017 YP_890048.1 CDS MSMEG_5820 NC_008596.1 5885520 5885951 D hypothetical protein 5885520..5885951 Mycobacterium smegmatis str. MC2 155 4535929 YP_890049.1 CDS MSMEG_5822 NC_008596.1 5885977 5887236 D hypothetical protein 5885977..5887236 Mycobacterium smegmatis str. MC2 155 4533935 YP_890050.1 CDS MSMEG_5821 NC_008596.1 5887175 5887831 R identified by match to protein family HMM PF02517; caax amino protease complement(5887175..5887831) Mycobacterium smegmatis str. MC2 155 4531999 YP_890051.1 CDS MSMEG_5823 NC_008596.1 5887831 5889561 R transmembrane protein complement(5887831..5889561) Mycobacterium smegmatis str. MC2 155 4532556 YP_890052.1 CDS purL NC_008596.1 5889558 5891855 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II complement(5889558..5891855) Mycobacterium smegmatis str. MC2 155 4534861 YP_890053.1 CDS MSMEG_5825 NC_008596.1 5891852 5893060 R identified by match to protein family HMM PF00999; Na+/H+ antiporter complement(5891852..5893060) Mycobacterium smegmatis str. MC2 155 4535939 YP_890054.1 CDS MSMEG_5826 NC_008596.1 5892606 5894912 D identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; pyruvate decarboxylase 5892606..5894912 Mycobacterium smegmatis str. MC2 155 4534888 YP_890055.1 CDS MSMEG_5827 NC_008596.1 5894923 5895273 R identified by match to protein family HMM PF00903; glyoxalase complement(5894923..5895273) Mycobacterium smegmatis str. MC2 155 4532877 YP_890056.1 CDS MSMEG_5828 NC_008596.1 5895289 5896554 R catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase complement(5895289..5896554) Mycobacterium smegmatis str. MC2 155 4536183 YP_890057.1 CDS MSMEG_5829 NC_008596.1 5896604 5897635 D identified by match to protein family HMM PF04261; match to protein family HMM TIGR01413; Dyp-type peroxidase 5896604..5897635 Mycobacterium smegmatis str. MC2 155 4533980 YP_890058.1 CDS MSMEG_5830 NC_008596.1 5897635 5898432 D identified by match to protein family HMM PF04454; hypothetical protein 5897635..5898432 Mycobacterium smegmatis str. MC2 155 4537157 YP_890059.1 CDS purQ NC_008596.1 5898597 5899271 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I complement(5898597..5899271) Mycobacterium smegmatis str. MC2 155 4533743 YP_890060.1 CDS purS NC_008596.1 5899268 5899516 R With PurL and PurQ catalyzes the conversion of formylglycinamide ribonucleotide, ATP, and glutamine to formylglycinamidine ribonucleotide, ADP, and glutamate in the fourth step of the purine biosynthetic pathway; phosphoribosylformylglycinamidine synthase subunit PurS complement(5899268..5899516) Mycobacterium smegmatis str. MC2 155 4531281 YP_890061.1 CDS MSMEG_5834 NC_008596.1 5900103 5900858 D identified by match to protein family HMM PF00753; metallo-beta-lactamase superfamily protein 5900103..5900858 Mycobacterium smegmatis str. MC2 155 4533537 YP_890062.1 CDS MSMEG_5835 NC_008596.1 5900871 5902514 R proposed role in polysaccahride synthesis; FAD-binding dehydrogenase complement(5900871..5902514) Mycobacterium smegmatis str. MC2 155 4530918 YP_890063.1 CDS MSMEG_5836 NC_008596.1 5902536 5903252 R hypothetical protein complement(5902536..5903252) Mycobacterium smegmatis str. MC2 155 4534042 YP_890064.1 CDS MSMEG_5837 NC_008596.1 5903317 5903802 R identified by similarity to SP:P06610; match to protein family HMM PF00255; glutathione peroxidase complement(5903317..5903802) Mycobacterium smegmatis str. MC2 155 4534839 YP_890065.1 CDS MSMEG_5838 NC_008596.1 5903822 5904367 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(5903822..5904367) Mycobacterium smegmatis str. MC2 155 4533885 YP_890066.1 CDS MSMEG_5840 NC_008596.1 5904456 5904905 D hypothetical protein 5904456..5904905 Mycobacterium smegmatis str. MC2 155 4530993 YP_890067.1 CDS MSMEG_5839 NC_008596.1 5904831 5906987 R identified by match to protein family HMM PF00326; match to protein family HMM PF02897; protease 2 complement(5904831..5906987) Mycobacterium smegmatis str. MC2 155 4536781 YP_890068.1 CDS purC NC_008596.1 5906984 5907883 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(5906984..5907883) Mycobacterium smegmatis str. MC2 155 4533235 YP_890069.1 CDS MSMEG_5842 NC_008596.1 5907914 5908537 D hypothetical protein 5907914..5908537 Mycobacterium smegmatis str. MC2 155 4535792 YP_890070.1 CDS MSMEG_5844 NC_008596.1 5908629 5909528 D hypothetical protein 5908629..5909528 Mycobacterium smegmatis str. MC2 155 4530996 YP_890071.1 CDS MSMEG_5843 NC_008596.1 5909473 5910120 R identified by match to protein family HMM PF08044; hypothetical protein complement(5909473..5910120) Mycobacterium smegmatis str. MC2 155 4532087 YP_890072.1 CDS MSMEG_5845 NC_008596.1 5910084 5911016 R C4-dicarboxylate transporter complement(5910084..5911016) Mycobacterium smegmatis str. MC2 155 4532055 YP_890073.1 CDS MSMEG_5846 NC_008596.1 5910956 5912161 R identified by match to protein family HMM PF00067; NikQ protein complement(5910956..5912161) Mycobacterium smegmatis str. MC2 155 4537703 YP_890074.1 CDS purB NC_008596.1 5912178 5913602 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(5912178..5913602) Mycobacterium smegmatis str. MC2 155 4534475 YP_890075.1 CDS MSMEG_5849 NC_008596.1 5913636 5915339 D identified by match to protein family HMM PF04607; hypothetical protein 5913636..5915339 Mycobacterium smegmatis str. MC2 155 4536345 YP_890076.1 CDS MSMEG_5848 NC_008596.1 5915336 5916760 R identified by match to protein family HMM PF00324; amino acid permease complement(5915336..5916760) Mycobacterium smegmatis str. MC2 155 4534808 YP_890077.1 CDS MSMEG_5850 NC_008596.1 5916780 5917400 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(5916780..5917400) Mycobacterium smegmatis str. MC2 155 4531594 YP_890078.1 CDS MSMEG_5851 NC_008596.1 5917517 5918410 D identified by match to protein family HMM PF00756; esterase 5917517..5918410 Mycobacterium smegmatis str. MC2 155 4535211 YP_890079.1 CDS purD NC_008596.1 5918416 5919597 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(5918416..5919597) Mycobacterium smegmatis str. MC2 155 4537728 YP_890080.1 CDS MSMEG_5853 NC_008596.1 5919783 5921018 D identified by match to protein family HMM PF00067; cytochrome P450 5919783..5921018 Mycobacterium smegmatis str. MC2 155 4534480 YP_890081.1 CDS MSMEG_5854 NC_008596.1 5921046 5921669 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 5921046..5921669 Mycobacterium smegmatis str. MC2 155 4537027 YP_890082.1 CDS MSMEG_5855 NC_008596.1 5921730 5922956 R hypothetical protein complement(5921730..5922956) Mycobacterium smegmatis str. MC2 155 4532485 YP_890083.1 CDS pcaC NC_008596.1 5922946 5923401 R identified by match to protein family HMM PF02627; hypothetical protein complement(5922946..5923401) Mycobacterium smegmatis str. MC2 155 4533947 YP_890084.1 CDS MSMEG_5857 NC_008596.1 5923404 5924258 R identified by match to protein family HMM PF03446; match to protein family HMM PF03721; oxidoreductase complement(5923404..5924258) Mycobacterium smegmatis str. MC2 155 4530970 YP_890085.1 CDS MSMEG_5858 NC_008596.1 5924255 5925019 R identified by match to protein family HMM PF00106; short chain dehydrogenase complement(5924255..5925019) Mycobacterium smegmatis str. MC2 155 4535186 YP_890086.1 CDS MSMEG_5859 NC_008596.1 5925031 5926500 R identified by match to protein family HMM PF00171; aldehyde dehydrogenase complement(5925031..5926500) Mycobacterium smegmatis str. MC2 155 4531529 YP_890087.1 CDS MSMEG_5860 NC_008596.1 5926686 5927285 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 5926686..5927285 Mycobacterium smegmatis str. MC2 155 4536757 YP_890088.1 CDS MSMEG_5861 NC_008596.1 5927282 5928484 D identified by match to protein family HMM PF00067; cytochrome P450 5927282..5928484 Mycobacterium smegmatis str. MC2 155 4531969 YP_890089.1 CDS MSMEG_5862 NC_008596.1 5928485 5929312 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase 5928485..5929312 Mycobacterium smegmatis str. MC2 155 4535583 YP_890090.1 CDS MSMEG_5863 NC_008596.1 5929309 5930664 D identified by match to protein family HMM PF00067; cytochrome P450 5929309..5930664 Mycobacterium smegmatis str. MC2 155 4531301 YP_890091.1 CDS MSMEG_5864 NC_008596.1 5930669 5930872 D cytochrome P450 5930669..5930872 Mycobacterium smegmatis str. MC2 155 4537163 YP_890092.1 CDS MSMEG_5865 NC_008596.1 5930884 5931423 D hypothetical protein 5930884..5931423 Mycobacterium smegmatis str. MC2 155 4537156 YP_890093.1 CDS MSMEG_5866 NC_008596.1 5931523 5932650 D identified by match to protein family HMM PF00107; alcohol dehydrogenase 5931523..5932650 Mycobacterium smegmatis str. MC2 155 4535442 YP_890094.1 CDS MSMEG_5867 NC_008596.1 5932661 5933098 D identified by match to protein family HMM PF02136; steroid delta-isomerase 5932661..5933098 Mycobacterium smegmatis str. MC2 155 4536856 YP_890095.1 CDS MSMEG_5869 NC_008596.1 5933124 5933951 D identified by match to protein family HMM PF00106; short chain dehydrogenase 5933124..5933951 Mycobacterium smegmatis str. MC2 155 4537669 YP_890096.1 CDS MSMEG_5868 NC_008596.1 5933938 5934246 R hypothetical protein complement(5933938..5934246) Mycobacterium smegmatis str. MC2 155 4530983 YP_890097.1 CDS MSMEG_5871 NC_008596.1 5934342 5934770 D identified by match to protein family HMM PF01230; HIT family protein 5934342..5934770 Mycobacterium smegmatis str. MC2 155 4537079 YP_890098.1 CDS MSMEG_5870 NC_008596.1 5934730 5936157 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase PhoR complement(5934730..5936157) Mycobacterium smegmatis str. MC2 155 4536891 YP_890099.1 CDS phoP NC_008596.1 5936199 5936918 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator PhoP complement(5936199..5936918) Mycobacterium smegmatis str. MC2 155 4534376 YP_890100.1 CDS MSMEG_5873 NC_008596.1 5937058 5937876 D hypothetical protein 5937058..5937876 Mycobacterium smegmatis str. MC2 155 4531866 YP_890101.1 CDS MSMEG_5876 NC_008596.1 5938086 5938424 D H-N-H endonuclease F-TflIV 5938086..5938424 Mycobacterium smegmatis str. MC2 155 4536305 YP_890102.1 CDS MSMEG_5875 NC_008596.1 5938421 5938591 R hypothetical protein complement(5938421..5938591) Mycobacterium smegmatis str. MC2 155 4533737 YP_890103.1 CDS MSMEG_5877 NC_008596.1 5938617 5939687 R hypothetical protein complement(5938617..5939687) Mycobacterium smegmatis str. MC2 155 4533762 YP_890104.1 CDS MSMEG_5878 NC_008596.1 5939853 5940551 R identified by match to protein family HMM PF01083; serine esterase, cutinase complement(5939853..5940551) Mycobacterium smegmatis str. MC2 155 4536836 YP_890105.1 CDS MSMEG_5879 NC_008596.1 5940642 5941298 R identified by match to protein family HMM PF01427; D-alanyl-D-alanine dipeptidase complement(5940642..5941298) Mycobacterium smegmatis str. MC2 155 4536372 YP_890106.1 CDS MSMEG_5880 NC_008596.1 5941399 5943753 D identified by match to protein family HMM PF01315; match to protein family HMM PF02738; nicotine dehydrogenase 5941399..5943753 Mycobacterium smegmatis str. MC2 155 4536740 YP_890107.1 CDS MSMEG_5881 NC_008596.1 5943756 5944466 D identified by match to protein family HMM PF06240; carbon monoxide dehydrogenase subunit G 5943756..5944466 Mycobacterium smegmatis str. MC2 155 4531194 YP_890108.1 CDS MSMEG_5882 NC_008596.1 5944463 5945350 D identified by match to protein family HMM PF00941; match to protein family HMM PF03450; carbon monoxide dehydrogenase 5944463..5945350 Mycobacterium smegmatis str. MC2 155 4534456 YP_890109.1 CDS MSMEG_5883 NC_008596.1 5945343 5945855 D identified by match to protein family HMM PF00111; match to protein family HMM PF01799; 2Fe-2S-binding domain-containing protein 5945343..5945855 Mycobacterium smegmatis str. MC2 155 4536455 YP_890110.1 CDS MSMEG_5884 NC_008596.1 5945888 5946787 D identified by match to protein family HMM PF03446; match to protein family HMM PF03807; 3-hydroxyisobutyrate dehydrogenase 5945888..5946787 Mycobacterium smegmatis str. MC2 155 4536111 YP_890111.1 CDS MSMEG_5885 NC_008596.1 5946791 5947627 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase complement(5946791..5947627) Mycobacterium smegmatis str. MC2 155 4536159 YP_890112.1 CDS MSMEG_5886 NC_008596.1 5947663 5948610 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(5947663..5948610) Mycobacterium smegmatis str. MC2 155 4533157 YP_890113.1 CDS MSMEG_5887 NC_008596.1 5948845 5949216 D intersectin-EH binding protein Ibp1 5948845..5949216 Mycobacterium smegmatis str. MC2 155 4534874 YP_890114.1 CDS MSMEG_5888 NC_008596.1 5949354 5949644 D hypothetical protein 5949354..5949644 Mycobacterium smegmatis str. MC2 155 4537048 YP_890115.1 CDS MSMEG_5889 NC_008596.1 5949761 5950150 D hypothetical protein 5949761..5950150 Mycobacterium smegmatis str. MC2 155 4531679 YP_890116.1 CDS MSMEG_5890 NC_008596.1 5950199 5950363 D hypothetical protein 5950199..5950363 Mycobacterium smegmatis str. MC2 155 4534183 YP_890117.1 CDS MSMEG_5892 NC_008596.1 5950364 5951875 D identified by match to protein family HMM PF00982; alpha,alpha-trehalose-phosphate synthase 5950364..5951875 Mycobacterium smegmatis str. MC2 155 4532640 YP_890118.1 CDS MSMEG_5891 NC_008596.1 5951872 5952933 R identified by similarity to GB:CAD18826.1; ISMsm5, transposase complement(5951872..5952933) Mycobacterium smegmatis str. MC2 155 4534784 YP_890119.1 CDS MSMEG_5893 NC_008596.1 5952977 5953462 R hypothetical protein complement(5952977..5953462) Mycobacterium smegmatis str. MC2 155 4537181 YP_890120.1 CDS MSMEG_5894 NC_008596.1 5953462 5954094 R hypothetical protein complement(5953462..5954094) Mycobacterium smegmatis str. MC2 155 4535919 YP_890121.1 CDS MSMEG_5895 NC_008596.1 5954163 5955857 R identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor mce family protein complement(5954163..5955857) Mycobacterium smegmatis str. MC2 155 4535512 YP_890122.1 CDS MSMEG_5896 NC_008596.1 5955858 5957006 R identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor Mce family protein complement(5955858..5957006) Mycobacterium smegmatis str. MC2 155 4537192 YP_890123.1 CDS MSMEG_5897 NC_008596.1 5957066 5958430 R identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor mce family protein complement(5957066..5958430) Mycobacterium smegmatis str. MC2 155 4534662 YP_890124.1 CDS MSMEG_5898 NC_008596.1 5958427 5959485 R identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor Mce family protein complement(5958427..5959485) Mycobacterium smegmatis str. MC2 155 4536294 YP_890125.1 CDS MSMEG_5899 NC_008596.1 5959478 5960512 R identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor Mce family protein complement(5959478..5960512) Mycobacterium smegmatis str. MC2 155 4531234 YP_890126.1 CDS MSMEG_5900 NC_008596.1 5960513 5961715 R identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor Mce family protein complement(5960513..5961715) Mycobacterium smegmatis str. MC2 155 4535202 YP_890127.1 CDS MSMEG_5901 NC_008596.1 5961722 5962585 R identified by match to protein family HMM PF02405; TrnB2 protein complement(5961722..5962585) Mycobacterium smegmatis str. MC2 155 4533490 YP_890128.1 CDS MSMEG_5902 NC_008596.1 5962620 5963384 R identified by match to protein family HMM PF02405; hypothetical protein complement(5962620..5963384) Mycobacterium smegmatis str. MC2 155 4531652 YP_890129.1 CDS fabG NC_008596.1 5963654 5964604 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(5963654..5964604) Mycobacterium smegmatis str. MC2 155 4531317 YP_890130.1 CDS MSMEG_5904 NC_008596.1 5964647 5964838 R hypothetical protein complement(5964647..5964838) Mycobacterium smegmatis str. MC2 155 4532956 YP_890131.1 CDS MSMEG_5905 NC_008596.1 5964972 5965067 R hypothetical protein complement(5964972..5965067) Mycobacterium smegmatis str. MC2 155 4534991 YP_890132.1 CDS MSMEG_5906 NC_008596.1 5965003 5966181 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; acyl-CoA dehydrogenase 5965003..5966181 Mycobacterium smegmatis str. MC2 155 4534815 YP_890133.1 CDS MSMEG_5907 NC_008596.1 5966201 5967298 D identified by match to protein family HMM PF00441; match to protein family HMM PF08028; acyl-CoA dehydrogenase 5966201..5967298 Mycobacterium smegmatis str. MC2 155 4532932 YP_890134.1 CDS MSMEG_5908 NC_008596.1 5967301 5968845 D activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 5967301..5968845 Mycobacterium smegmatis str. MC2 155 4533267 YP_890135.1 CDS MSMEG_5909 NC_008596.1 5968842 5969831 D identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368; match to protein family HMM PF07993; oxidoreductase 5968842..5969831 Mycobacterium smegmatis str. MC2 155 4534374 YP_890136.1 CDS MSMEG_5911 NC_008596.1 5969786 5970586 D AraC family transcriptional regulator 5969786..5970586 Mycobacterium smegmatis str. MC2 155 4537619 YP_890137.1 CDS MSMEG_5910 NC_008596.1 5970523 5970918 R identified by match to protein family HMM PF00903; quinone binding protein complement(5970523..5970918) Mycobacterium smegmatis str. MC2 155 4537737 YP_890138.1 CDS gabD2 NC_008596.1 5971046 5972599 D NADP-dependent semialdehyde dehydrogenase; part of alternative pathway from alpha-ketoglutarate to succinate; succinate-semialdehyde dehydrogenase 5971046..5972599 Mycobacterium smegmatis str. MC2 155 4534217 YP_890139.1 CDS MSMEG_5913 NC_008596.1 5972603 5973724 R identified by match to protein family HMM PF03060; dioxygenase complement(5972603..5973724) Mycobacterium smegmatis str. MC2 155 4535196 YP_890140.1 CDS MSMEG_5914 NC_008596.1 5973735 5975390 R activates fatty acids by binding to coenzyme A; in Mycobacterium may be involved in virulence; acyl-CoA synthetase complement(5973735..5975390) Mycobacterium smegmatis str. MC2 155 4531469 YP_890141.1 CDS MSMEG_5915 NC_008596.1 5975459 5976259 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 5975459..5976259 Mycobacterium smegmatis str. MC2 155 4532793 YP_890142.1 CDS MSMEG_5916 NC_008596.1 5976314 5976595 R hypothetical protein complement(5976314..5976595) Mycobacterium smegmatis str. MC2 155 4537211 YP_890143.1 CDS MSMEG_5917 NC_008596.1 5976871 5977719 D hypothetical protein 5976871..5977719 Mycobacterium smegmatis str. MC2 155 4532321 YP_890144.1 CDS MSMEG_5918 NC_008596.1 5977791 5978996 R identified by match to protein family HMM PF00067; P450 heme-thiolate protein complement(5977791..5978996) Mycobacterium smegmatis str. MC2 155 4533135 YP_890145.1 CDS MSMEG_5919 NC_008596.1 5978993 5979709 R hypothetical protein complement(5978993..5979709) Mycobacterium smegmatis str. MC2 155 4537165 YP_890146.1 CDS MSMEG_5920 NC_008596.1 5979753 5980784 R identified by match to protein family HMM PF00296; FMN-dependent monooxygenase complement(5979753..5980784) Mycobacterium smegmatis str. MC2 155 4534917 YP_890147.1 CDS MSMEG_5921 NC_008596.1 5980944 5981846 D identified by match to protein family HMM PF01796; hypothetical protein 5980944..5981846 Mycobacterium smegmatis str. MC2 155 4537538 YP_890148.1 CDS MSMEG_5922 NC_008596.1 5981886 5982929 D lipid-transfer protein 5981886..5982929 Mycobacterium smegmatis str. MC2 155 4533069 YP_890149.1 CDS MSMEG_5923 NC_008596.1 5982929 5984107 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 5982929..5984107 Mycobacterium smegmatis str. MC2 155 4535548 YP_890150.1 CDS MSMEG_5924 NC_008596.1 5984266 5984898 D hypothetical protein 5984266..5984898 Mycobacterium smegmatis str. MC2 155 4531465 YP_890151.1 CDS MSMEG_5925 NC_008596.1 5985003 5986154 D identified by match to protein family HMM PF00355; Rieske (2Fe-2S) domain-containing protein 5985003..5986154 Mycobacterium smegmatis str. MC2 155 4535703 YP_890152.1 CDS MSMEG_5927 NC_008596.1 5986154 5986630 D hypothetical protein 5986154..5986630 Mycobacterium smegmatis str. MC2 155 4531625 YP_890153.1 CDS MSMEG_5926 NC_008596.1 5986627 5988120 R hypothetical protein complement(5986627..5988120) Mycobacterium smegmatis str. MC2 155 4532285 YP_890154.1 CDS MSMEG_5928 NC_008596.1 5988156 5988833 R hypothetical protein complement(5988156..5988833) Mycobacterium smegmatis str. MC2 155 4531713 YP_890155.1 CDS MSMEG_5929 NC_008596.1 5988883 5989782 R hypothetical protein complement(5988883..5989782) Mycobacterium smegmatis str. MC2 155 4536687 YP_890156.1 CDS MSMEG_5930 NC_008596.1 5989939 5991066 R hypothetical protein complement(5989939..5991066) Mycobacterium smegmatis str. MC2 155 4532867 YP_890157.1 CDS MSMEG_5931 NC_008596.1 5991078 5991860 R identified by match to protein family HMM PF00106; short chain dehydrogenase complement(5991078..5991860) Mycobacterium smegmatis str. MC2 155 4533682 YP_890158.1 CDS MSMEG_5932 NC_008596.1 5991863 5992990 R hypothetical protein complement(5991863..5992990) Mycobacterium smegmatis str. MC2 155 4531687 YP_890159.1 CDS MSMEG_5933 NC_008596.1 5993104 5994012 D hypothetical protein 5993104..5994012 Mycobacterium smegmatis str. MC2 155 4534781 YP_890160.1 CDS MSMEG_5934 NC_008596.1 5994025 5994357 R hypothetical protein complement(5994025..5994357) Mycobacterium smegmatis str. MC2 155 4535467 YP_890161.1 CDS MSMEG_5935 NC_008596.1 5994502 5996577 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614; ATP-dependent DNA helicase complement(5994502..5996577) Mycobacterium smegmatis str. MC2 155 4536410 YP_890162.1 CDS MSMEG_5938 NC_008596.1 5996576 5997187 D hypothetical protein 5996576..5997187 Mycobacterium smegmatis str. MC2 155 4537650 YP_890163.1 CDS MSMEG_5936 NC_008596.1 5996684 5997067 R hypothetical protein complement(5996684..5997067) Mycobacterium smegmatis str. MC2 155 4531543 YP_890164.1 CDS MSMEG_5937 NC_008596.1 5997153 5998202 R catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase complement(5997153..5998202) Mycobacterium smegmatis str. MC2 155 4530906 YP_890165.1 CDS MSMEG_5939 NC_008596.1 5998199 5999164 R catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase complement(5998199..5999164) Mycobacterium smegmatis str. MC2 155 4531880 YP_890166.1 CDS MSMEG_5940 NC_008596.1 5999161 5999946 R identified by match to protein family HMM PF01689; 2-keto-4-pentenoate hydratase complement(5999161..5999946) Mycobacterium smegmatis str. MC2 155 4535057 YP_890167.2 CDS MSMEG_5941 NC_008596.1 6000020 6001720 D initiates steroid ring degradation; catalyzes the transhydrogenation of 3-keto-4-ene-steroid to 3-keto-1,4-diene-steroid e.g., progesterone to 1,4-androstadiene-3,17-dione; 3-ketosteroid-delta-1-dehydrogenase 6000020..6001720 Mycobacterium smegmatis str. MC2 155 4536963 YP_890168.1 CDS MSMEG_5943 NC_008596.1 6001722 6002582 D identified by match to protein family HMM PF01575; peroxisomal multifunctional enzyme type 2 6001722..6002582 Mycobacterium smegmatis str. MC2 155 4537400 YP_890169.1 CDS MSMEG_5942 NC_008596.1 6002532 6005153 R identified by match to protein family HMM PF00501; AMP-dependent synthetase/ligase complement(6002532..6005153) Mycobacterium smegmatis str. MC2 155 4532435 YP_890170.1 CDS MSMEG_5944 NC_008596.1 6005369 6006970 D identified by match to protein family HMM PF00732; match to protein family HMM PF01266; glucose-methanol-choline oxidoreductase 6005369..6006970 Mycobacterium smegmatis str. MC2 155 4536633 YP_890171.1 CDS MSMEG_5945 NC_008596.1 6007005 6007583 D identified by match to protein family HMM PF02698; hypothetical protein 6007005..6007583 Mycobacterium smegmatis str. MC2 155 4535343 YP_890172.1 CDS cysE NC_008596.1 6007711 6008229 D serine O-acetyltransferase 6007711..6008229 Mycobacterium smegmatis str. MC2 155 4532962 YP_890173.1 CDS MSMEG_5946 NC_008596.1 6008195 6009514 R hypothetical protein complement(6008195..6009514) Mycobacterium smegmatis str. MC2 155 4534650 YP_890174.1 CDS MSMEG_5948 NC_008596.1 6009511 6010416 R identified by match to protein family HMM PF00535; glycosyl transferase family protein complement(6009511..6010416) Mycobacterium smegmatis str. MC2 155 4534105 YP_890175.1 CDS MSMEG_5949 NC_008596.1 6010413 6011549 R hypothetical protein complement(6010413..6011549) Mycobacterium smegmatis str. MC2 155 4531067 YP_890176.1 CDS MSMEG_5950 NC_008596.1 6011799 6012347 D colanic acid biosynthesis acetyltransferase WcaF 6011799..6012347 Mycobacterium smegmatis str. MC2 155 4537609 YP_890177.1 CDS MSMEG_5951 NC_008596.1 6012352 6013476 D identified by match to protein family HMM PF00534; group 1 glycosyl transferase 6012352..6013476 Mycobacterium smegmatis str. MC2 155 4532410 YP_890178.1 CDS MSMEG_5952 NC_008596.1 6013473 6014132 D identified by match to protein family HMM PF00657; hypothetical protein 6013473..6014132 Mycobacterium smegmatis str. MC2 155 4536425 YP_890179.1 CDS MSMEG_5953 NC_008596.1 6014129 6014881 D hypothetical protein 6014129..6014881 Mycobacterium smegmatis str. MC2 155 4535075 YP_890180.1 CDS MSMEG_5954 NC_008596.1 6014893 6015528 D identified by match to protein family HMM PF02706; cell surface polysaccharide biosynthesis 6014893..6015528 Mycobacterium smegmatis str. MC2 155 4531014 YP_890181.1 CDS MSMEG_5955 NC_008596.1 6015525 6016190 D identified by match to protein family HMM PF02706; protein-tyrosine kinase 6015525..6016190 Mycobacterium smegmatis str. MC2 155 4533721 YP_890182.1 CDS MSMEG_5956 NC_008596.1 6016202 6017173 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD dependent epimerase/dehydratase complement(6016202..6017173) Mycobacterium smegmatis str. MC2 155 4531444 YP_890183.1 CDS algD NC_008596.1 6017397 6018887 R identified by similarity to SP:O07299; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; GDP-mannose 6-dehydrogenase AlgD complement(6017397..6018887) Mycobacterium smegmatis str. MC2 155 4535208 YP_890184.1 CDS MSMEG_5958 NC_008596.1 6019278 6020018 D hypothetical protein 6019278..6020018 Mycobacterium smegmatis str. MC2 155 4535983 YP_890185.1 CDS MSMEG_5960 NC_008596.1 6020161 6021429 D identified by match to protein family HMM PF04932; O-antigen polymerase 6020161..6021429 Mycobacterium smegmatis str. MC2 155 4535312 YP_890186.1 CDS MSMEG_5959 NC_008596.1 6021392 6022453 R hypothetical protein complement(6021392..6022453) Mycobacterium smegmatis str. MC2 155 4532000 YP_890187.1 CDS MSMEG_5961 NC_008596.1 6022498 6023439 R identified by match to protein family HMM PF00535; glycosyl transferase family protein complement(6022498..6023439) Mycobacterium smegmatis str. MC2 155 4537587 YP_890188.1 CDS MSMEG_5962 NC_008596.1 6023439 6024206 R identified by match to protein family HMM PF01522; glycosyl transferase family protein complement(6023439..6024206) Mycobacterium smegmatis str. MC2 155 4532114 YP_890189.1 CDS MSMEG_5963 NC_008596.1 6024203 6026290 R identified by match to protein family HMM PF00535; glycosyl transferase family protein complement(6024203..6026290) Mycobacterium smegmatis str. MC2 155 4535952 YP_890190.1 CDS MSMEG_5964 NC_008596.1 6026548 6027831 R identified by match to protein family HMM PF00534; group 1 glycosyl transferase complement(6026548..6027831) Mycobacterium smegmatis str. MC2 155 4531554 YP_890191.1 CDS MSMEG_5965 NC_008596.1 6028304 6029836 D hypothetical protein 6028304..6029836 Mycobacterium smegmatis str. MC2 155 4535638 YP_890192.1 CDS MSMEG_5966 NC_008596.1 6029863 6030627 R identified by match to protein family HMM PF00106; oxidoreductase, short chain dehydrogenase/reductase complement(6029863..6030627) Mycobacterium smegmatis str. MC2 155 4531841 YP_890193.1 CDS MSMEG_5967 NC_008596.1 6030680 6032335 R identified by match to protein family HMM PF00732; match to protein family HMM PF01266; match to protein family HMM PF05199; glucose-methanol-choline oxidoreductase complement(6030680..6032335) Mycobacterium smegmatis str. MC2 155 4532774 YP_890194.1 CDS MSMEG_5968 NC_008596.1 6032735 6034267 R identified by match to protein family HMM PF01943; polysaccharide biosynthesis protein complement(6032735..6034267) Mycobacterium smegmatis str. MC2 155 4530900 YP_890195.1 CDS MSMEG_5969 NC_008596.1 6034371 6035585 R hypothetical protein complement(6034371..6035585) Mycobacterium smegmatis str. MC2 155 4532638 YP_890196.1 CDS MSMEG_5970 NC_008596.1 6035857 6037233 D catalyzes the formation of 5-aminovulinate from (S)-4-amino-5-oxopentanoate; glutamate-1-semialdehyde 2,1-aminomutase 6035857..6037233 Mycobacterium smegmatis str. MC2 155 4535594 YP_890197.1 CDS MSMEG_5971 NC_008596.1 6037508 6037984 D hypothetical protein 6037508..6037984 Mycobacterium smegmatis str. MC2 155 4533289 YP_890198.1 CDS MSMEG_5972 NC_008596.1 6038034 6038726 R hypothetical protein complement(6038034..6038726) Mycobacterium smegmatis str. MC2 155 4532289 YP_890199.1 CDS MSMEG_5973 NC_008596.1 6038769 6038999 D hypothetical protein 6038769..6038999 Mycobacterium smegmatis str. MC2 155 4532523 YP_890200.1 CDS MSMEG_5974 NC_008596.1 6039284 6039442 D hypothetical protein 6039284..6039442 Mycobacterium smegmatis str. MC2 155 4530832 YP_890201.1 CDS MSMEG_5975 NC_008596.1 6039559 6040632 R methyltransferase type 12 complement(6039559..6040632) Mycobacterium smegmatis str. MC2 155 4533602 YP_890202.1 CDS rfbC NC_008596.1 6040647 6041201 D identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221; dTDP-4-dehydrorhamnose 3,5-epimerase 6040647..6041201 Mycobacterium smegmatis str. MC2 155 4535066 YP_890203.1 CDS MSMEG_5976 NC_008596.1 6041185 6042213 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; epimerase/dehydratase complement(6041185..6042213) Mycobacterium smegmatis str. MC2 155 4536012 YP_890204.1 CDS MSMEG_5978 NC_008596.1 6042243 6042911 R identified by match to protein family HMM PF02585; GlcNAc-PI de-N-acetylase complement(6042243..6042911) Mycobacterium smegmatis str. MC2 155 4534608 YP_890205.1 CDS MSMEG_5979 NC_008596.1 6042908 6043708 R transferase complement(6042908..6043708) Mycobacterium smegmatis str. MC2 155 4536835 YP_890206.1 CDS MSMEG_5980 NC_008596.1 6043705 6044961 R methyltransferase complement(6043705..6044961) Mycobacterium smegmatis str. MC2 155 4531471 YP_890207.1 CDS MSMEG_5981 NC_008596.1 6044958 6045992 R identified by match to protein family HMM PF04101; glycosyl transferase family protein complement(6044958..6045992) Mycobacterium smegmatis str. MC2 155 4530916 YP_890208.1 CDS MSMEG_5982 NC_008596.1 6046007 6047368 R identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; UDP-glucose 6-dehydrogenase complement(6046007..6047368) Mycobacterium smegmatis str. MC2 155 4535880 YP_890209.1 CDS rfbA NC_008596.1 6047365 6048243 R identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase complement(6047365..6048243) Mycobacterium smegmatis str. MC2 155 4534598 YP_890210.1 CDS MSMEG_5984 NC_008596.1 6048253 6049809 R identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025; UDP-phosphate galactosephosphotransferase complement(6048253..6049809) Mycobacterium smegmatis str. MC2 155 4531566 YP_890211.1 CDS MSMEG_5985 NC_008596.1 6049806 6050765 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD dependent epimerase/dehydratase complement(6049806..6050765) Mycobacterium smegmatis str. MC2 155 4531113 YP_890212.1 CDS glmS NC_008596.1 6050802 6052589 R identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135; glucosamine--fructose-6-phosphate aminotransferase complement(6050802..6052589) Mycobacterium smegmatis str. MC2 155 4534960 YP_890213.1 CDS MSMEG_5987 NC_008596.1 6052909 6053826 R identified by match to protein family HMM PF00072; match to protein family HMM PF00196; two-component regulator complement(6052909..6053826) Mycobacterium smegmatis str. MC2 155 4535389 YP_890214.1 CDS MSMEG_5988 NC_008596.1 6054384 6055199 R hypothetical protein complement(6054384..6055199) Mycobacterium smegmatis str. MC2 155 4531629 YP_890215.1 CDS MSMEG_5989 NC_008596.1 6055221 6056327 R hypothetical protein complement(6055221..6056327) Mycobacterium smegmatis str. MC2 155 4537051 YP_890216.1 CDS MSMEG_5990 NC_008596.1 6056400 6057563 R lipid-transfer protein complement(6056400..6057563) Mycobacterium smegmatis str. MC2 155 4534730 YP_890217.1 CDS MSMEG_5991 NC_008596.1 6057560 6057973 R identified by match to protein family HMM PF01575; MaoC like domain-containing protein complement(6057560..6057973) Mycobacterium smegmatis str. MC2 155 4534654 YP_890218.1 CDS MSMEG_5992 NC_008596.1 6057955 6058920 R identified by match to protein family HMM PF01796; hypothetical protein complement(6057955..6058920) Mycobacterium smegmatis str. MC2 155 4533998 YP_890219.1 CDS MSMEG_5993 NC_008596.1 6058917 6060080 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; acyl-CoA dehydrogenase complement(6058917..6060080) Mycobacterium smegmatis str. MC2 155 4534974 YP_890220.1 CDS MSMEG_5994 NC_008596.1 6060080 6061084 R identified by match to protein family HMM PF00441; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(6060080..6061084) Mycobacterium smegmatis str. MC2 155 4533611 YP_890221.1 CDS MSMEG_5995 NC_008596.1 6061103 6062386 R identified by match to protein family HMM PF00067; P450 heme-thiolate protein complement(6061103..6062386) Mycobacterium smegmatis str. MC2 155 4531666 YP_890222.1 CDS MSMEG_5996 NC_008596.1 6062510 6063673 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 6062510..6063673 Mycobacterium smegmatis str. MC2 155 4537015 YP_890223.1 CDS MSMEG_5997 NC_008596.1 6063676 6064056 D hypothetical protein 6063676..6064056 Mycobacterium smegmatis str. MC2 155 4536030 YP_890224.1 CDS MSMEG_5998 NC_008596.1 6064064 6064543 D identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026; hypothetical protein 6064064..6064543 Mycobacterium smegmatis str. MC2 155 4537608 YP_890225.1 CDS MSMEG_5999 NC_008596.1 6064621 6065526 R identified by match to protein family HMM PF00106; short chain dehydrogenase complement(6064621..6065526) Mycobacterium smegmatis str. MC2 155 4532496 YP_890226.1 CDS MSMEG_6000 NC_008596.1 6065542 6066324 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase complement(6065542..6066324) Mycobacterium smegmatis str. MC2 155 4537426 YP_890227.1 CDS MSMEG_6001 NC_008596.1 6066386 6067141 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 6066386..6067141 Mycobacterium smegmatis str. MC2 155 4533129 YP_890228.1 CDS MSMEG_6002 NC_008596.1 6067138 6068025 D identified by match to protein family HMM PF01144; coenzyme A transferase subunit A 6067138..6068025 Mycobacterium smegmatis str. MC2 155 4532526 YP_890229.1 CDS MSMEG_6003 NC_008596.1 6068022 6068771 D coenzyme A transferase subunit B 6068022..6068771 Mycobacterium smegmatis str. MC2 155 4534542 YP_890230.1 CDS MSMEG_6004 NC_008596.1 6068768 6069844 D identified by similarity to GB:AAF98273.1; match to protein family HMM PF03060; oxidoreductase, 2-nitropropane dioxygenase 6068768..6069844 Mycobacterium smegmatis str. MC2 155 4536000 YP_890231.1 CDS MSMEG_6005 NC_008596.1 6069888 6070526 D hypothetical protein 6069888..6070526 Mycobacterium smegmatis str. MC2 155 4535656 YP_890232.1 CDS MSMEG_6006 NC_008596.1 6070523 6071269 D hypothetical protein 6070523..6071269 Mycobacterium smegmatis str. MC2 155 4535195 YP_890233.1 CDS MSMEG_6008 NC_008596.1 6072343 6073491 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(6072343..6073491) Mycobacterium smegmatis str. MC2 155 4533924 YP_890234.1 CDS MSMEG_6009 NC_008596.1 6073484 6074101 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(6073484..6074101) Mycobacterium smegmatis str. MC2 155 4534868 YP_890235.1 CDS MSMEG_6010 NC_008596.1 6074416 6074934 D hypothetical protein 6074416..6074934 Mycobacterium smegmatis str. MC2 155 4535816 YP_890236.1 CDS MSMEG_6011 NC_008596.1 6075060 6075848 R identified by match to protein family HMM PF00106; short chain dehydrogenase complement(6075060..6075848) Mycobacterium smegmatis str. MC2 155 4532571 YP_890237.1 CDS MSMEG_6012 NC_008596.1 6075845 6077023 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase complement(6075845..6077023) Mycobacterium smegmatis str. MC2 155 4532837 YP_890238.1 CDS MSMEG_6014 NC_008596.1 6078624 6079766 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; acyl-CoA dehydrogenase 6078624..6079766 Mycobacterium smegmatis str. MC2 155 4534629 YP_890239.1 CDS MSMEG_6015 NC_008596.1 6079763 6080719 D identified by match to protein family HMM PF00441; match to protein family HMM PF08028; acyl-CoA dehydrogenase 6079763..6080719 Mycobacterium smegmatis str. MC2 155 4535406 YP_890240.1 CDS MSMEG_6016 NC_008596.1 6080716 6081651 D identified by match to protein family HMM PF00441; match to protein family HMM PF08028; acyl-CoA dehydrogenase 6080716..6081651 Mycobacterium smegmatis str. MC2 155 4532685 YP_890241.1 CDS MSMEG_6017 NC_008596.1 6081669 6082838 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 6081669..6082838 Mycobacterium smegmatis str. MC2 155 4536459 YP_890242.1 CDS MSMEG_6018 NC_008596.1 6082847 6084166 R identified by match to protein family HMM PF02653; xylose transporter permease XylH complement(6082847..6084166) Mycobacterium smegmatis str. MC2 155 4532323 YP_890243.1 CDS MSMEG_6019 NC_008596.1 6084175 6084954 R identified by match to protein family HMM PF00005; sugar ABC transporter ATPase complement(6084175..6084954) Mycobacterium smegmatis str. MC2 155 4534270 YP_890244.1 CDS MSMEG_6020 NC_008596.1 6084958 6086037 R sugar ABC transporter periplasmic protein complement(6084958..6086037) Mycobacterium smegmatis str. MC2 155 4531707 YP_890245.1 CDS xylA NC_008596.1 6086090 6087313 R catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase complement(6086090..6087313) Mycobacterium smegmatis str. MC2 155 4534333 YP_890246.1 CDS MSMEG_6022 NC_008596.1 6087420 6088601 D identified by match to protein family HMM PF00480; xylose repressor, ROK-family protein transcriptional regulator 6087420..6088601 Mycobacterium smegmatis str. MC2 155 4531053 YP_890247.1 CDS MSMEG_6023 NC_008596.1 6088633 6089832 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase complement(6088633..6089832) Mycobacterium smegmatis str. MC2 155 4532072 YP_890248.1 CDS MSMEG_6025 NC_008596.1 6090096 6091412 D hypothetical protein 6090096..6091412 Mycobacterium smegmatis str. MC2 155 4534823 YP_890249.1 CDS MSMEG_6024 NC_008596.1 6091393 6093327 R AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase complement(6091393..6093327) Mycobacterium smegmatis str. MC2 155 4532175 YP_890250.1 CDS MSMEG_6026 NC_008596.1 6093324 6094070 R identified by match to protein family HMM PF00106; match to protein family HMM TIGR01963; 3-hydroxybutyrate dehydrogenase complement(6093324..6094070) Mycobacterium smegmatis str. MC2 155 4534083 YP_890251.1 CDS MSMEG_6027 NC_008596.1 6094067 6095395 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator superfamily protein complement(6094067..6095395) Mycobacterium smegmatis str. MC2 155 4534686 YP_890252.1 CDS MSMEG_6028 NC_008596.1 6095547 6096458 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 6095547..6096458 Mycobacterium smegmatis str. MC2 155 4531683 YP_890253.1 CDS MSMEG_6029 NC_008596.1 6096471 6097322 D hypothetical protein 6096471..6097322 Mycobacterium smegmatis str. MC2 155 4531745 YP_890254.1 CDS MSMEG_6030 NC_008596.1 6097336 6098625 R identified by match to protein family HMM PF00067; cytochrome p450 complement(6097336..6098625) Mycobacterium smegmatis str. MC2 155 4534889 YP_890255.1 CDS MSMEG_6032 NC_008596.1 6098766 6099374 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 6098766..6099374 Mycobacterium smegmatis str. MC2 155 4535671 YP_890256.1 CDS MSMEG_6031 NC_008596.1 6099367 6100206 R identified by match to protein family HMM PF00106; carveol dehydrogenase complement(6099367..6100206) Mycobacterium smegmatis str. MC2 155 4535895 YP_890257.1 CDS MSMEG_6033 NC_008596.1 6100369 6101910 R hypothetical protein complement(6100369..6101910) Mycobacterium smegmatis str. MC2 155 4531138 YP_890258.1 CDS MSMEG_6034 NC_008596.1 6101788 6101937 D hypothetical protein 6101788..6101937 Mycobacterium smegmatis str. MC2 155 4534021 YP_890259.1 CDS MSMEG_6035 NC_008596.1 6102080 6102649 R identified by match to protein family HMM PF01613; nitrilotriacetate monooxygenase component B complement(6102080..6102649) Mycobacterium smegmatis str. MC2 155 4537666 YP_890260.1 CDS MSMEG_6036 NC_008596.1 6102657 6103556 R identified by match to protein family HMM PF00903; biphenyl-2,3-diol 1,2-dioxygenase complement(6102657..6103556) Mycobacterium smegmatis str. MC2 155 4536437 YP_890261.1 CDS MSMEG_6037 NC_008596.1 6103557 6104435 R identified by match to protein family HMM PF00561; 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase complement(6103557..6104435) Mycobacterium smegmatis str. MC2 155 4532164 YP_890262.1 CDS MSMEG_6038 NC_008596.1 6104435 6105625 R identified by match to protein family HMM PF08028; pigment production hydroxylase complement(6104435..6105625) Mycobacterium smegmatis str. MC2 155 4534749 YP_890263.1 CDS MSMEG_6039 NC_008596.1 6105785 6106846 D identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; oxidoreductase, electron transfer component 6105785..6106846 Mycobacterium smegmatis str. MC2 155 4535854 YP_890264.1 CDS MSMEG_6040 NC_008596.1 6106889 6107464 D hypothetical protein 6106889..6107464 Mycobacterium smegmatis str. MC2 155 4536570 YP_890265.1 CDS MSMEG_6041 NC_008596.1 6107545 6109689 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase complement(6107545..6109689) Mycobacterium smegmatis str. MC2 155 4533039 YP_890266.1 CDS MSMEG_6042 NC_008596.1 6109952 6110566 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 6109952..6110566 Mycobacterium smegmatis str. MC2 155 4531834 YP_890267.1 CDS otsB NC_008596.1 6110570 6111319 D identified by match to protein family HMM PF02358; match to protein family HMM TIGR00685; match to protein family HMM TIGR01484; trehalose-phosphatase 6110570..6111319 Mycobacterium smegmatis str. MC2 155 4531826 YP_890268.1 CDS MSMEG_6044 NC_008596.1 6111320 6112420 R identified by match to protein family HMM PF00532; ligand-binding /sugar binding domain-containing protein complement(6111320..6112420) Mycobacterium smegmatis str. MC2 155 4530939 YP_890269.1 CDS MSMEG_6045 NC_008596.1 6112469 6113341 R identified by match to protein family HMM PF00950; heavy metal ABC transporter inner membrane protein complement(6112469..6113341) Mycobacterium smegmatis str. MC2 155 4532249 YP_890270.1 CDS MSMEG_6046 NC_008596.1 6113341 6114120 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(6113341..6114120) Mycobacterium smegmatis str. MC2 155 4534775 YP_890271.1 CDS MSMEG_6047 NC_008596.1 6114107 6115072 R identified by match to protein family HMM PF01297; cation ABC transporter periplasmic cation-binding protein complement(6114107..6115072) Mycobacterium smegmatis str. MC2 155 4532922 YP_890272.1 CDS MSMEG_6048 NC_008596.1 6115172 6116308 D identified by match to protein family HMM PF02492; match to protein family HMM PF07683; cobalamin synthesis protein/P47K 6115172..6116308 Mycobacterium smegmatis str. MC2 155 4535677 YP_890273.1 CDS MSMEG_6049 NC_008596.1 6116358 6117524 R hypothetical protein complement(6116358..6117524) Mycobacterium smegmatis str. MC2 155 4531847 YP_890274.1 CDS MSMEG_6050 NC_008596.1 6117544 6118446 R identified by match to protein family HMM PF01297; solute-binding lipoprotein complement(6117544..6118446) Mycobacterium smegmatis str. MC2 155 4535123 YP_890275.1 CDS MSMEG_6052 NC_008596.1 6120497 6121207 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 6120497..6121207 Mycobacterium smegmatis str. MC2 155 4537537 YP_890276.1 CDS bluB NC_008596.1 6121140 6121799 D identified by match to protein family HMM PF00881; match to protein family HMM TIGR02476; cob(II)yrinic acid a,c-diamide reductase 6121140..6121799 Mycobacterium smegmatis str. MC2 155 4535931 YP_890277.1 CDS MSMEG_6054 NC_008596.1 6121823 6122608 D identified by match to protein family HMM PF03746; LamB/YcsF family protein 6121823..6122608 Mycobacterium smegmatis str. MC2 155 4531241 YP_890278.1 CDS MSMEG_6055 NC_008596.1 6122623 6122877 R hypothetical protein complement(6122623..6122877) Mycobacterium smegmatis str. MC2 155 4531290 YP_890279.1 CDS MSMEG_6057 NC_008596.1 6124745 6125368 D MspD protein 6124745..6125368 Mycobacterium smegmatis str. MC2 155 4537162 YP_890280.1 CDS MSMEG_6058 NC_008596.1 6125473 6127611 R identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525; cadmium transporting P-type ATPase complement(6125473..6127611) Mycobacterium smegmatis str. MC2 155 4531264 YP_890281.1 CDS MSMEG_6059 NC_008596.1 6127628 6127912 R hypothetical protein complement(6127628..6127912) Mycobacterium smegmatis str. MC2 155 4533067 YP_890282.1 CDS MSMEG_6060 NC_008596.1 6127999 6129036 D identified by match to protein family HMM PF03773; permease 6127999..6129036 Mycobacterium smegmatis str. MC2 155 4532351 YP_890283.1 CDS MSMEG_6061 NC_008596.1 6129033 6129749 D hypothetical protein 6129033..6129749 Mycobacterium smegmatis str. MC2 155 4535553 YP_890284.1 CDS MSMEG_6062 NC_008596.1 6129763 6130554 R identified by match to protein family HMM PF00005; Fe uptake system permease complement(6129763..6130554) Mycobacterium smegmatis str. MC2 155 4534454 YP_890285.1 CDS MSMEG_6063 NC_008596.1 6130551 6131585 R identified by match to protein family HMM PF01032; match to protein family HMM PF02653; Fe uptake system integral membrane protein complement(6130551..6131585) Mycobacterium smegmatis str. MC2 155 4536322 YP_890286.1 CDS MSMEG_6064 NC_008596.1 6131586 6132566 R identified by match to protein family HMM PF01497; lipoprotein complement(6131586..6132566) Mycobacterium smegmatis str. MC2 155 4534195 YP_890287.1 CDS rpsR NC_008596.1 6132746 6133003 R identified by match to protein family HMM PF01084; match to protein family HMM TIGR00165; 30S ribosomal protein S18 complement(6132746..6133003) Mycobacterium smegmatis str. MC2 155 4533544 YP_890288.1 CDS rpsN NC_008596.1 6133000 6133305 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(6133000..6133305) Mycobacterium smegmatis str. MC2 155 4536521 YP_890289.1 CDS rpmG NC_008596.1 6133305 6133469 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(6133305..6133469) Mycobacterium smegmatis str. MC2 155 4534128 YP_890290.1 CDS rpmB NC_008596.1 6133469 6133705 R identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; 50S ribosomal protein L28 complement(6133469..6133705) Mycobacterium smegmatis str. MC2 155 4531534 YP_890291.1 CDS MSMEG_6069 NC_008596.1 6133794 6134993 D identified by match to protein family HMM PF07683; CobW/P47K domain-containing protein 6133794..6134993 Mycobacterium smegmatis str. MC2 155 4536227 YP_890292.1 CDS rpmE2 NC_008596.1 6134990 6135238 D RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 6134990..6135238 Mycobacterium smegmatis str. MC2 155 4531515 YP_890293.1 CDS MSMEG_6071 NC_008596.1 6135261 6136205 D identified by match to protein family HMM PF00753; metallo-beta-lactamase superfamily protein 6135261..6136205 Mycobacterium smegmatis str. MC2 155 4532759 YP_890294.1 CDS MSMEG_6072 NC_008596.1 6136154 6137437 D identified by match to protein family HMM PF02040; match to protein family HMM PF03600; citrate transporter 6136154..6137437 Mycobacterium smegmatis str. MC2 155 4533398 YP_890295.1 CDS MSMEG_6073 NC_008596.1 6137444 6138388 R identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; TrmH family RNA methyltransferase complement(6137444..6138388) Mycobacterium smegmatis str. MC2 155 4530982 YP_890296.1 CDS cysS NC_008596.1 6138388 6139821 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(6138388..6139821) Mycobacterium smegmatis str. MC2 155 4532680 YP_890297.1 CDS ispF NC_008596.1 6139851 6140342 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(6139851..6140342) Mycobacterium smegmatis str. MC2 155 4536746 YP_890298.1 CDS ispD NC_008596.1 6140339 6141007 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(6140339..6141007) Mycobacterium smegmatis str. MC2 155 4536829 YP_890299.1 CDS MSMEG_6077 NC_008596.1 6141027 6141515 R identified by match to protein family HMM PF02559; CarD family transcriptional regulator complement(6141027..6141515) Mycobacterium smegmatis str. MC2 155 4534522 YP_890300.1 CDS MSMEG_6078 NC_008596.1 6141800 6142360 D LpqE protein 6141800..6142360 Mycobacterium smegmatis str. MC2 155 4535163 YP_890301.1 CDS radA NC_008596.1 6142417 6143817 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 6142417..6143817 Mycobacterium smegmatis str. MC2 155 4535537 YP_890302.1 CDS MSMEG_6080 NC_008596.1 6143853 6144971 D non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair; DNA integrity scanning protein DisA 6143853..6144971 Mycobacterium smegmatis str. MC2 155 4531051 YP_890303.1 CDS MSMEG_6081 NC_008596.1 6144973 6145758 R hypothetical protein complement(6144973..6145758) Mycobacterium smegmatis str. MC2 155 4536328 YP_890304.1 CDS MSMEG_6082 NC_008596.1 6145828 6146448 R identified by match to protein family HMM PF00484; carbonic anhydrase complement(6145828..6146448) Mycobacterium smegmatis str. MC2 155 4532691 YP_890305.1 CDS MSMEG_6083 NC_008596.1 6146474 6147355 D identified by match to protein family HMM PF00633; match to protein family HMM PF00730; base excision DNA repair protein, HhH-GPD family protein 6146474..6147355 Mycobacterium smegmatis str. MC2 155 4534190 YP_890306.1 CDS MSMEG_6085 NC_008596.1 6148672 6149445 R identified by match to protein family HMM PF00561; hydrolase, alpha/beta hydrolase fold family protein complement(6148672..6149445) Mycobacterium smegmatis str. MC2 155 4535224 YP_890307.1 CDS MSMEG_6086 NC_008596.1 6149485 6149802 D identified by match to protein family HMM PF03992; antibiotic biosynthesis monooxygenase domain-containing protein 6149485..6149802 Mycobacterium smegmatis str. MC2 155 4532094 YP_890308.1 CDS MSMEG_6087 NC_008596.1 6149846 6151165 D identified by match to protein family HMM PF00144; beta-lactamase 6149846..6151165 Mycobacterium smegmatis str. MC2 155 4531501 YP_890309.1 CDS MSMEG_6088 NC_008596.1 6151170 6151718 R identified by match to protein family HMM PF00300; phosphoglycerate mutase complement(6151170..6151718) Mycobacterium smegmatis str. MC2 155 4536366 YP_890310.1 CDS MSMEG_6089 NC_008596.1 6151715 6152521 R hypothetical protein complement(6151715..6152521) Mycobacterium smegmatis str. MC2 155 4533504 YP_890311.1 CDS MSMEG_6090 NC_008596.1 6152546 6152758 R hypothetical protein complement(6152546..6152758) Mycobacterium smegmatis str. MC2 155 4536916 YP_890312.1 CDS MSMEG_6091 NC_008596.1 6152971 6155517 R identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; negative regulator of genetic competence ClpC/mecB complement(6152971..6155517) Mycobacterium smegmatis str. MC2 155 4533739 YP_890313.1 CDS MSMEG_6093 NC_008596.1 6155687 6156166 D hypothetical protein 6155687..6156166 Mycobacterium smegmatis str. MC2 155 4532955 YP_890314.1 CDS MSMEG_6092 NC_008596.1 6155786 6156130 R Lsr2 protein complement(6155786..6156130) Mycobacterium smegmatis str. MC2 155 4533438 YP_890315.1 CDS lysS NC_008596.1 6156246 6157769 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(6156246..6157769) Mycobacterium smegmatis str. MC2 155 4536547 YP_890316.1 CDS MSMEG_6095 NC_008596.1 6157793 6159031 D D-amino acid deaminase 6157793..6159031 Mycobacterium smegmatis str. MC2 155 4533997 YP_890317.1 CDS MSMEG_6096 NC_008596.1 6159032 6159847 R type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase complement(6159032..6159847) Mycobacterium smegmatis str. MC2 155 4537529 YP_890318.1 CDS panC NC_008596.1 6159923 6160867 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(6159923..6160867) Mycobacterium smegmatis str. MC2 155 4531246 YP_890319.1 CDS MSMEG_6098 NC_008596.1 6160864 6161811 R chalcone/stilbene synthase complement(6160864..6161811) Mycobacterium smegmatis str. MC2 155 4533427 YP_890320.1 CDS MSMEG_6099 NC_008596.1 6161892 6163442 R hypothetical protein complement(6161892..6163442) Mycobacterium smegmatis str. MC2 155 4531906 YP_890321.1 CDS MSMEG_6100 NC_008596.1 6163589 6164065 R hypothetical protein complement(6163589..6164065) Mycobacterium smegmatis str. MC2 155 4537319 YP_890322.1 CDS folK NC_008596.1 6164065 6164601 R identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(6164065..6164601) Mycobacterium smegmatis str. MC2 155 4533729 YP_890323.1 CDS folB NC_008596.1 6164598 6164969 R identified by match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526; dihydroneopterin aldolase complement(6164598..6164969) Mycobacterium smegmatis str. MC2 155 4533751 YP_890324.1 CDS folP NC_008596.1 6164962 6165819 R identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase complement(6164962..6165819) Mycobacterium smegmatis str. MC2 155 4531804 YP_890325.1 CDS folE NC_008596.1 6165816 6166427 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(6165816..6166427) Mycobacterium smegmatis str. MC2 155 4537026 YP_890326.1 CDS MSMEG_6105 NC_008596.1 6166447 6168759 R identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241; cell division protein complement(6166447..6168759) Mycobacterium smegmatis str. MC2 155 4531167 YP_890327.1 CDS MSMEG_6106 NC_008596.1 6168956 6169927 D identified by match to protein family HMM PF00561; epoxide hydrolase 6168956..6169927 Mycobacterium smegmatis str. MC2 155 4537430 YP_890328.1 CDS MSMEG_6107 NC_008596.1 6169927 6171114 D identified by match to protein family HMM PF00296; limonene 1,2-monooxygenase 6169927..6171114 Mycobacterium smegmatis str. MC2 155 4534335 YP_890329.1 CDS MSMEG_6108 NC_008596.1 6171114 6172130 D identified by match to protein family HMM PF00107; zinc-binding dehydrogenase 6171114..6172130 Mycobacterium smegmatis str. MC2 155 4533468 YP_890330.1 CDS MSMEG_6109 NC_008596.1 6172152 6172883 D identified by match to protein family HMM PF04402; LpqG protein 6172152..6172883 Mycobacterium smegmatis str. MC2 155 4531399 YP_890331.1 CDS hpt NC_008596.1 6172888 6173469 R identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase complement(6172888..6173469) Mycobacterium smegmatis str. MC2 155 4531743 YP_890332.1 CDS tilS NC_008596.1 6173520 6174488 R identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; tRNA(Ile)-lysidine synthetase complement(6173520..6174488) Mycobacterium smegmatis str. MC2 155 4537595 YP_890333.1 CDS MSMEG_6112 NC_008596.1 6174467 6175540 R hypothetical protein complement(6174467..6175540) Mycobacterium smegmatis str. MC2 155 4532511 YP_890334.1 CDS dacB NC_008596.1 6175537 6176979 R identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase complement(6175537..6176979) Mycobacterium smegmatis str. MC2 155 4531184 YP_890335.1 CDS ppa NC_008596.1 6177063 6177551 D identified by match to protein family HMM PF00719; inorganic pyrophosphatase 6177063..6177551 Mycobacterium smegmatis str. MC2 155 4531949 YP_890336.1 CDS MSMEG_6116 NC_008596.1 6177612 6178142 D OHCU decarboxylase 6177612..6178142 Mycobacterium smegmatis str. MC2 155 4535718 YP_890337.1 CDS MSMEG_6115 NC_008596.1 6178118 6179122 R identified by match to protein family HMM PF02826; phosphoglycerate dehydrogenase complement(6178118..6179122) Mycobacterium smegmatis str. MC2 155 4535201 YP_890338.1 CDS MSMEG_6117 NC_008596.1 6179128 6180477 R identified by match to protein family HMM PF01188; glucarate dehydratase complement(6179128..6180477) Mycobacterium smegmatis str. MC2 155 4533768 YP_890339.1 CDS MSMEG_6118 NC_008596.1 6180503 6181303 R identified by match to protein family HMM PF01614; IclR-family protein transcriptional regulator complement(6180503..6181303) Mycobacterium smegmatis str. MC2 155 4534218 YP_890340.1 CDS MSMEG_6119 NC_008596.1 6181305 6182027 R identified by match to protein family HMM PF01925; hypothetical protein complement(6181305..6182027) Mycobacterium smegmatis str. MC2 155 4537493 YP_890341.1 CDS MSMEG_6120 NC_008596.1 6182024 6183022 R identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; peptide transporter ATP-binding protein complement(6182024..6183022) Mycobacterium smegmatis str. MC2 155 4531821 YP_890342.1 CDS MSMEG_6121 NC_008596.1 6183015 6184046 R identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; dipeptide transport ATP-binding protein DppD complement(6183015..6184046) Mycobacterium smegmatis str. MC2 155 4533597 YP_890343.1 CDS MSMEG_6122 NC_008596.1 6184043 6185029 R identified by match to protein family HMM PF00528; ABC transporter complement(6184043..6185029) Mycobacterium smegmatis str. MC2 155 4536108 YP_890344.1 CDS MSMEG_6123 NC_008596.1 6185038 6185967 R identified by match to protein family HMM PF00528; ABC transporter complement(6185038..6185967) Mycobacterium smegmatis str. MC2 155 4531514 YP_890345.1 CDS MSMEG_6124 NC_008596.1 6185995 6187557 R identified by match to protein family HMM PF00496; peptide ABC transporter substrate-binding protein complement(6185995..6187557) Mycobacterium smegmatis str. MC2 155 4536709 YP_890346.1 CDS MSMEG_6126 NC_008596.1 6187851 6188864 D identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase 6187851..6188864 Mycobacterium smegmatis str. MC2 155 4535954 YP_890347.1 CDS MSMEG_6125 NC_008596.1 6188858 6189787 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulatory protein complement(6188858..6189787) Mycobacterium smegmatis str. MC2 155 4531419 YP_890348.1 CDS MSMEG_6127 NC_008596.1 6190044 6190403 D identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; anti-anti-sigma factor 6190044..6190403 Mycobacterium smegmatis str. MC2 155 4531900 YP_890349.1 CDS MSMEG_6129 NC_008596.1 6190437 6190883 D hypothetical protein 6190437..6190883 Mycobacterium smegmatis str. MC2 155 4532990 YP_890350.1 CDS MSMEG_6128 NC_008596.1 6190869 6191315 R identified by match to protein family HMM PF00072; two-component system response regulator complement(6190869..6191315) Mycobacterium smegmatis str. MC2 155 4534793 YP_890351.1 CDS MSMEG_6130 NC_008596.1 6191312 6192889 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF05227; two-component sensor protein complement(6191312..6192889) Mycobacterium smegmatis str. MC2 155 4536992 YP_890352.1 CDS MSMEG_6131 NC_008596.1 6192886 6194094 R identified by match to protein family HMM PF00072; match to protein family HMM PF07228; magnesium or manganese-dependent protein phosphatase complement(6192886..6194094) Mycobacterium smegmatis str. MC2 155 4530965 YP_890353.1 CDS MSMEG_6132 NC_008596.1 6194325 6195596 R identified by match to protein family HMM PF01188; glucarate dehydratase complement(6194325..6195596) Mycobacterium smegmatis str. MC2 155 4536344 YP_890354.1 CDS MSMEG_6133 NC_008596.1 6195607 6196530 R catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate; 5-dehydro-4-deoxyglucarate dehydratase complement(6195607..6196530) Mycobacterium smegmatis str. MC2 155 4532288 YP_890355.1 CDS MSMEG_6134 NC_008596.1 6196561 6198159 R identified by match to protein family HMM PF00171; NADP-dependent fatty aldehyde dehydrogenase complement(6196561..6198159) Mycobacterium smegmatis str. MC2 155 4532083 YP_890356.1 CDS MSMEG_6135 NC_008596.1 6198302 6198706 R hypothetical protein complement(6198302..6198706) Mycobacterium smegmatis str. MC2 155 4532170 YP_890357.1 CDS MSMEG_6136 NC_008596.1 6198808 6199776 R identified by match to protein family HMM PF03741; membrane protein, TerC family protein complement(6198808..6199776) Mycobacterium smegmatis str. MC2 155 4536986 YP_890358.1 CDS MSMEG_6137 NC_008596.1 6200005 6203940 D identified by match to protein family HMM PF00132; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733; match to protein family HMM TIGR02353; non-ribosomal peptide synthetase 6200005..6203940 Mycobacterium smegmatis str. MC2 155 4534097 YP_890359.1 CDS MSMEG_6138 NC_008596.1 6203937 6205274 D identified by match to protein family HMM PF01433; metallopeptidase 6203937..6205274 Mycobacterium smegmatis str. MC2 155 4530976 YP_890360.1 CDS MSMEG_6140 NC_008596.1 6205271 6206551 D membrane protein 6205271..6206551 Mycobacterium smegmatis str. MC2 155 4536689 YP_890361.1 CDS MSMEG_6139 NC_008596.1 6206541 6207134 R identified by match to protein family HMM PF00440; HTH-type transcriptional regulator complement(6206541..6207134) Mycobacterium smegmatis str. MC2 155 4532395 YP_890362.1 CDS MSMEG_6141 NC_008596.1 6207136 6208917 R N-acyl-D-glutamate amidohydrolase complement(6207136..6208917) Mycobacterium smegmatis str. MC2 155 4534357 YP_890363.1 CDS MSMEG_6142 NC_008596.1 6208979 6209926 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; nucleoside-diphosphate-sugar epimerase complement(6208979..6209926) Mycobacterium smegmatis str. MC2 155 4536745 YP_890364.1 CDS MSMEG_6143 NC_008596.1 6209977 6211740 D hypothetical protein 6209977..6211740 Mycobacterium smegmatis str. MC2 155 4535089 YP_890365.1 CDS MSMEG_6144 NC_008596.1 6211742 6213193 R PE family protein complement(6211742..6213193) Mycobacterium smegmatis str. MC2 155 4531135 YP_890366.1 CDS MSMEG_6145 NC_008596.1 6213505 6214221 D hypothetical protein 6213505..6214221 Mycobacterium smegmatis str. MC2 155 4534643 YP_890367.1 CDS MSMEG_6146 NC_008596.1 6214302 6215708 D identified by similarity to GP:4838457; match to protein family HMM PF01609; ISMsm3, transposase 6214302..6215708 Mycobacterium smegmatis str. MC2 155 4535527 YP_890368.1 CDS MSMEG_6147 NC_008596.1 6215883 6216974 D hypothetical protein 6215883..6216974 Mycobacterium smegmatis str. MC2 155 4537043 YP_890369.1 CDS MSMEG_6148 NC_008596.1 6217061 6218383 D identified by similarity to GP:150005; match to protein family HMM PF01610; IS1096, tnpA protein 6217061..6218383 Mycobacterium smegmatis str. MC2 155 4533045 YP_890370.1 CDS MSMEG_6149 NC_008596.1 6218391 6219092 R identified by similarity to GP:150004; match to protein family HMM PF07929; IS1096, tnpR protein complement(6218391..6219092) Mycobacterium smegmatis str. MC2 155 4533487 YP_890371.1 CDS MSMEG_6150 NC_008596.1 6219676 6220032 D identified by match to protein family HMM PF02627; 4-carboxymuconolactone decarboxylase 6219676..6220032 Mycobacterium smegmatis str. MC2 155 4534652 YP_890372.1 CDS MSMEG_6151 NC_008596.1 6220029 6220904 D identified by match to protein family HMM PF00561; alpha/beta hydrolase 6220029..6220904 Mycobacterium smegmatis str. MC2 155 4536249 YP_890373.1 CDS MSMEG_6153 NC_008596.1 6221127 6222335 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the subunit beta on the DNA; DNA polymerase III subunit delta' complement(6221127..6222335) Mycobacterium smegmatis str. MC2 155 4532723 YP_890374.1 CDS MSMEG_6154 NC_008596.1 6222417 6224108 D identified by match to protein family HMM PF00211; match to protein family HMM PF00672; adenylate cyclase 6222417..6224108 Mycobacterium smegmatis str. MC2 155 4534525 YP_890375.1 CDS MSMEG_6155 NC_008596.1 6224166 6225488 D identified by similarity to GP:150005; match to protein family HMM PF01610; IS1096, tnpA protein 6224166..6225488 Mycobacterium smegmatis str. MC2 155 4534792 YP_890376.1 CDS MSMEG_6156 NC_008596.1 6225496 6226197 R identified by similarity to GP:150004; match to protein family HMM PF07929; IS1096, tnpR protein complement(6225496..6226197) Mycobacterium smegmatis str. MC2 155 4532417 YP_890377.1 CDS topA NC_008596.1 6226360 6229170 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(6226360..6229170) Mycobacterium smegmatis str. MC2 155 4535825 YP_890378.1 CDS MSMEG_6158 NC_008596.1 6229274 6229867 R hypothetical protein complement(6229274..6229867) Mycobacterium smegmatis str. MC2 155 4537185 YP_890379.1 CDS MSMEG_6159 NC_008596.1 6229963 6230166 R identified by match to protein family HMM PF00313; hypothetical protein complement(6229963..6230166) Mycobacterium smegmatis str. MC2 155 4533253 YP_890380.1 CDS MSMEG_6160 NC_008596.1 6230468 6232798 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; ATP-dependent rna helicase, dead/deah box family protein 6230468..6232798 Mycobacterium smegmatis str. MC2 155 4537284 YP_890381.1 CDS MSMEG_6161 NC_008596.1 6233070 6234392 D identified by similarity to GP:150005; match to protein family HMM PF01610; IS1096, tnpA protein 6233070..6234392 Mycobacterium smegmatis str. MC2 155 4535006 YP_890382.1 CDS MSMEG_6162 NC_008596.1 6234400 6235101 R identified by similarity to GP:150004; match to protein family HMM PF07929; IS1096, tnpR protein complement(6234400..6235101) Mycobacterium smegmatis str. MC2 155 4532411 YP_890383.1 CDS MSMEG_6163 NC_008596.1 6235347 6236363 D hypothetical protein 6235347..6236363 Mycobacterium smegmatis str. MC2 155 4532465 YP_890384.1 CDS MSMEG_6166 NC_008596.1 6236388 6236831 D hypothetical protein 6236388..6236831 Mycobacterium smegmatis str. MC2 155 4531535 YP_890385.1 CDS MSMEG_6164 NC_008596.1 6236448 6236774 R hypothetical protein complement(6236448..6236774) Mycobacterium smegmatis str. MC2 155 4536371 YP_890386.1 CDS MSMEG_6165 NC_008596.1 6236785 6237345 R hypothetical protein complement(6236785..6237345) Mycobacterium smegmatis str. MC2 155 4534601 YP_890387.1 CDS MSMEG_6167 NC_008596.1 6237351 6237920 R identified by match to protein family HMM PF00482; type II secretion system protein F complement(6237351..6237920) Mycobacterium smegmatis str. MC2 155 4531814 YP_890388.1 CDS MSMEG_6168 NC_008596.1 6237917 6238549 R identified by match to protein family HMM PF00482; type II secretion system protein F complement(6237917..6238549) Mycobacterium smegmatis str. MC2 155 4533430 YP_890389.1 CDS MSMEG_6170 NC_008596.1 6238524 6238718 D hypothetical protein 6238524..6238718 Mycobacterium smegmatis str. MC2 155 4534229 YP_890390.1 CDS MSMEG_6169 NC_008596.1 6238696 6239853 R identified by match to protein family HMM PF00437; type II/IV secretion system protein complement(6238696..6239853) Mycobacterium smegmatis str. MC2 155 4535166 YP_890391.1 CDS MSMEG_6171 NC_008596.1 6239850 6240800 R hypothetical protein complement(6239850..6240800) Mycobacterium smegmatis str. MC2 155 4532471 YP_890392.1 CDS MSMEG_6172 NC_008596.1 6240784 6241332 R hypothetical protein complement(6240784..6241332) Mycobacterium smegmatis str. MC2 155 4537306 YP_890393.1 CDS MSMEG_6173 NC_008596.1 6241372 6242253 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; morphological differentiation-associated protein 6241372..6242253 Mycobacterium smegmatis str. MC2 155 4532236 YP_890394.1 CDS MSMEG_6174 NC_008596.1 6242692 6243474 R identified by match to protein family HMM PF01614; IclR family transcriptional regulator complement(6242692..6243474) Mycobacterium smegmatis str. MC2 155 4530857 YP_890395.1 CDS MSMEG_6175 NC_008596.1 6243569 6244549 D identified by match to protein family HMM PF05035; 2-keto-3-deoxy-galactonokinase 6243569..6244549 Mycobacterium smegmatis str. MC2 155 4536031 YP_890396.1 CDS MSMEG_6176 NC_008596.1 6244546 6245172 D identified by match to protein family HMM PF01081; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase 6244546..6245172 Mycobacterium smegmatis str. MC2 155 4534822 YP_890397.1 CDS MSMEG_6177 NC_008596.1 6245169 6246317 D identified by match to protein family HMM PF01188; match to protein family HMM PF02746; galactonate dehydratase 6245169..6246317 Mycobacterium smegmatis str. MC2 155 4534964 YP_890398.1 CDS MSMEG_6178 NC_008596.1 6246323 6247654 D identified by match to protein family HMM PF07690; D-galactonate transporter 6246323..6247654 Mycobacterium smegmatis str. MC2 155 4534602 YP_890399.1 CDS MSMEG_6179 NC_008596.1 6247672 6250494 D identified by match to protein family HMM PF00501; match to protein family HMM TIGR02188; acetyl-coenzyme A synthetase 6247672..6250494 Mycobacterium smegmatis str. MC2 155 4534714 YP_890400.1 CDS MSMEG_6180 NC_008596.1 6250558 6251238 R hypothetical protein complement(6250558..6251238) Mycobacterium smegmatis str. MC2 155 4535921 YP_890401.1 CDS MSMEG_6181 NC_008596.1 6251348 6251857 R hypothetical protein complement(6251348..6251857) Mycobacterium smegmatis str. MC2 155 4536042 YP_890402.1 CDS MSMEG_6182 NC_008596.1 6251411 6251920 D identified by match to protein family HMM PF07332; hypothetical protein 6251411..6251920 Mycobacterium smegmatis str. MC2 155 4531808 YP_890403.1 CDS MSMEG_6184 NC_008596.1 6251920 6252870 D identified by match to protein family HMM PF00561; alpha/beta hydrolase 6251920..6252870 Mycobacterium smegmatis str. MC2 155 4536803 YP_890404.1 CDS MSMEG_6183 NC_008596.1 6252860 6254050 R identified by match to protein family HMM PF00089; match to protein family HMM PF02674; serine protease complement(6252860..6254050) Mycobacterium smegmatis str. MC2 155 4534332 YP_890405.1 CDS MSMEG_6185 NC_008596.1 6254050 6254838 R identified by match to protein family HMM PF00293; NTP pyrophosphohydrolase complement(6254050..6254838) Mycobacterium smegmatis str. MC2 155 4531208 YP_890406.1 CDS MSMEG_6186 NC_008596.1 6254850 6255497 R hypothetical protein complement(6254850..6255497) Mycobacterium smegmatis str. MC2 155 4537144 YP_890407.1 CDS nth NC_008596.1 6255512 6256291 R identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III complement(6255512..6256291) Mycobacterium smegmatis str. MC2 155 4537384 YP_890408.1 CDS MSMEG_6188 NC_008596.1 6256441 6256734 D hypothetical protein 6256441..6256734 Mycobacterium smegmatis str. MC2 155 4536644 YP_890409.1 CDS MSMEG_6189 NC_008596.1 6256824 6257498 D identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp/Fnr family transcriptional regulator protein 6256824..6257498 Mycobacterium smegmatis str. MC2 155 4530875 YP_890410.1 CDS MSMEG_6190 NC_008596.1 6257583 6258377 R identified by match to protein family HMM PF00753; metallo-beta-lactamase complement(6257583..6258377) Mycobacterium smegmatis str. MC2 155 4535142 YP_890411.1 CDS MSMEG_6191 NC_008596.1 6258374 6258850 R identified by match to protein family HMM PF01042; translation initiation inhibitor complement(6258374..6258850) Mycobacterium smegmatis str. MC2 155 4534276 YP_890412.1 CDS MSMEG_6192 NC_008596.1 6258847 6259008 R hypothetical protein complement(6258847..6259008) Mycobacterium smegmatis str. MC2 155 4537104 YP_890413.1 CDS MSMEG_6193 NC_008596.1 6259056 6260090 D identified by match to protein family HMM PF02374; anion-transporting ATPase 6259056..6260090 Mycobacterium smegmatis str. MC2 155 4537170 YP_890414.1 CDS MSMEG_6195 NC_008596.1 6260087 6261217 D identified by match to protein family HMM PF02374; ion-transporting ATPase 6260087..6261217 Mycobacterium smegmatis str. MC2 155 4532619 YP_890415.1 CDS MSMEG_6194 NC_008596.1 6261214 6262032 R beta-lactamase related protein complement(6261214..6262032) Mycobacterium smegmatis str. MC2 155 4535450 YP_890416.1 CDS MSMEG_6196 NC_008596.1 6262025 6263446 R identified by match to protein family HMM PF00324; match to protein family HMM PF03845; gaba permease complement(6262025..6263446) Mycobacterium smegmatis str. MC2 155 4537683 YP_890417.1 CDS MSMEG_6197 NC_008596.1 6263460 6264839 R identified by match to protein family HMM PF00278; match to protein family HMM PF02784; diaminopimelate decarboxylase complement(6263460..6264839) Mycobacterium smegmatis str. MC2 155 4532906 YP_890418.1 CDS MSMEG_6198 NC_008596.1 6264963 6266579 R identified by match to protein family HMM PF02954; DNA-binding protein complement(6264963..6266579) Mycobacterium smegmatis str. MC2 155 4535135 YP_890419.1 CDS MSMEG_6199 NC_008596.1 6266743 6267099 R identified by match to protein family HMM PF02467; transcription factor WhiB complement(6266743..6267099) Mycobacterium smegmatis str. MC2 155 4534201 YP_890420.1 CDS MSMEG_6200 NC_008596.1 6267234 6267377 R hypothetical protein complement(6267234..6267377) Mycobacterium smegmatis str. MC2 155 4536825 YP_890421.1 CDS MSMEG_6201 NC_008596.1 6267483 6269849 D identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF03793; transglycosylase 6267483..6269849 Mycobacterium smegmatis str. MC2 155 4532387 YP_890422.1 CDS MSMEG_6202 NC_008596.1 6269949 6270935 D identified by match to protein family HMM PF00149; hypothetical protein 6269949..6270935 Mycobacterium smegmatis str. MC2 155 4531879 YP_890423.1 CDS MSMEG_6203 NC_008596.1 6270944 6272041 D identified by match to protein family HMM PF00291; cysteine synthase/cystathionine beta-synthase 6270944..6272041 Mycobacterium smegmatis str. MC2 155 4531342 YP_890424.1 CDS MSMEG_6205 NC_008596.1 6272624 6272785 D hypothetical protein 6272624..6272785 Mycobacterium smegmatis str. MC2 155 4537689 YP_890425.1 CDS MSMEG_6206 NC_008596.1 6272798 6274021 R identified by match to protein family HMM PF00069; serine/threonine protein kinase complement(6272798..6274021) Mycobacterium smegmatis str. MC2 155 4531854 YP_890426.1 CDS MSMEG_6207 NC_008596.1 6274084 6274581 D hypothetical protein 6274084..6274581 Mycobacterium smegmatis str. MC2 155 4531256 YP_890427.1 CDS MSMEG_6208 NC_008596.1 6274619 6275416 D identified by match to protein family HMM PF02551; palmitoyl-CoA hydrolase 6274619..6275416 Mycobacterium smegmatis str. MC2 155 4535912 YP_890428.1 CDS MSMEG_6209 NC_008596.1 6275481 6275699 D hypothetical protein 6275481..6275699 Mycobacterium smegmatis str. MC2 155 4537561 YP_890429.1 CDS MSMEG_6210 NC_008596.1 6275706 6276398 D hypothetical protein 6275706..6276398 Mycobacterium smegmatis str. MC2 155 4533448 YP_890430.1 CDS MSMEG_6211 NC_008596.1 6276404 6276556 R hypothetical protein complement(6276404..6276556) Mycobacterium smegmatis str. MC2 155 4535573 YP_890431.1 CDS MSMEG_6212 NC_008596.1 6276681 6277265 D hemerythrin HHE cation binding domain-containing protein 6276681..6277265 Mycobacterium smegmatis str. MC2 155 4535741 YP_890432.1 CDS MSMEG_6213 NC_008596.1 6277327 6278220 R identified by match to protein family HMM PF05067; manganese containing catalase complement(6277327..6278220) Mycobacterium smegmatis str. MC2 155 4537344 YP_890433.1 CDS MSMEG_6214 NC_008596.1 6278296 6278760 R identified by match to protein family HMM PF02637; GatB/Yqey domain-containing protein complement(6278296..6278760) Mycobacterium smegmatis str. MC2 155 4532904 YP_890434.1 CDS MSMEG_6215 NC_008596.1 6278771 6279496 R identified by match to protein family HMM PF04402; hypothetical protein complement(6278771..6279496) Mycobacterium smegmatis str. MC2 155 4537646 YP_890435.1 CDS MSMEG_6216 NC_008596.1 6279519 6280592 D integral membrane protein 6279519..6280592 Mycobacterium smegmatis str. MC2 155 4533949 YP_890436.1 CDS MSMEG_6217 NC_008596.1 6280594 6281244 D integral membrane protein 6280594..6281244 Mycobacterium smegmatis str. MC2 155 4532335 YP_890437.1 CDS MSMEG_6218 NC_008596.1 6281226 6282347 D hypothetical protein 6281226..6282347 Mycobacterium smegmatis str. MC2 155 4531560 YP_890438.1 CDS MSMEG_6219 NC_008596.1 6282344 6283315 D identified by match to protein family HMM PF07726; match to protein family HMM PF07728; ATPase AAA 6282344..6283315 Mycobacterium smegmatis str. MC2 155 4532735 YP_890439.1 CDS MSMEG_6220 NC_008596.1 6283315 6284637 D identified by match to protein family HMM PF01882; lipoprotein 6283315..6284637 Mycobacterium smegmatis str. MC2 155 4535908 YP_890440.1 CDS MSMEG_6221 NC_008596.1 6284642 6285634 R integral membrane protein complement(6284642..6285634) Mycobacterium smegmatis str. MC2 155 4536296 YP_890441.1 CDS MSMEG_6222 NC_008596.1 6285668 6286591 D identified by match to protein family HMM PF06271; integral membrane protein 6285668..6286591 Mycobacterium smegmatis str. MC2 155 4531132 YP_890442.1 CDS MSMEG_6223 NC_008596.1 6286641 6287210 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 6286641..6287210 Mycobacterium smegmatis str. MC2 155 4534500 YP_890443.1 CDS MSMEG_6225 NC_008596.1 6287282 6288796 D identified by match to protein family HMM PF07690; proton antiporter efflux pump 6287282..6288796 Mycobacterium smegmatis str. MC2 155 4534787 YP_890444.1 CDS MSMEG_6224 NC_008596.1 6288786 6290105 R identified by match to protein family HMM PF03055; retinal pigment epithelial membrane protein complement(6288786..6290105) Mycobacterium smegmatis str. MC2 155 4532713 YP_890445.1 CDS MSMEG_6226 NC_008596.1 6290191 6290715 D identified by match to protein family HMM PF03551; transcriptional regulator 6290191..6290715 Mycobacterium smegmatis str. MC2 155 4536991 YP_890446.1 CDS MSMEG_6227 NC_008596.1 6290798 6291538 D identified by match to protein family HMM PF03551; PadR family transcriptional regulator 6290798..6291538 Mycobacterium smegmatis str. MC2 155 4537469 YP_890447.1 CDS MSMEG_6228 NC_008596.1 6291559 6292239 D hypothetical protein 6291559..6292239 Mycobacterium smegmatis str. MC2 155 4531910 YP_890448.1 CDS glpK NC_008596.1 6292243 6293760 R Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase complement(6292243..6293760) Mycobacterium smegmatis str. MC2 155 4536033 YP_890449.1 CDS MSMEG_6231 NC_008596.1 6293807 6294562 D hypothetical protein 6293807..6294562 Mycobacterium smegmatis str. MC2 155 4533384 YP_890450.1 CDS MSMEG_6230 NC_008596.1 6294559 6295710 R identified by match to protein family HMM PF01757; acyltransferase complement(6294559..6295710) Mycobacterium smegmatis str. MC2 155 4533198 YP_890451.1 CDS katA NC_008596.1 6295741 6297402 R identified by similarity to SP:P26901; match to protein family HMM PF00199; catalase KatA complement(6295741..6297402) Mycobacterium smegmatis str. MC2 155 4536096 YP_890452.1 CDS MSMEG_6233 NC_008596.1 6297491 6298297 R hypothetical protein complement(6297491..6298297) Mycobacterium smegmatis str. MC2 155 4533620 YP_890453.1 CDS MSMEG_6234 NC_008596.1 6298376 6299845 D hypothetical protein 6298376..6299845 Mycobacterium smegmatis str. MC2 155 4533098 YP_890454.1 CDS MSMEG_6235 NC_008596.1 6299856 6300536 D identified by match to protein family HMM PF05724; thiopurine S-methyltransferase (tpmt) superfamily protein 6299856..6300536 Mycobacterium smegmatis str. MC2 155 4532656 YP_890455.1 CDS MSMEG_6237 NC_008596.1 6300742 6301623 D hypothetical protein 6300742..6301623 Mycobacterium smegmatis str. MC2 155 4534508 YP_890456.1 CDS MSMEG_6236 NC_008596.1 6301620 6302270 R identified by match to protein family HMM PF00072; match to protein family HMM PF00196; two-component system, regulatory protein complement(6301620..6302270) Mycobacterium smegmatis str. MC2 155 4537744 YP_890457.1 CDS MSMEG_6238 NC_008596.1 6302267 6303418 R identified by match to protein family HMM PF02518; match to protein family HMM PF07730; two-component system sensor kinase complement(6302267..6303418) Mycobacterium smegmatis str. MC2 155 4532801 YP_890458.1 CDS MSMEG_6239 NC_008596.1 6303617 6304816 R identified by match to protein family HMM PF00465; 1,3-propanediol dehydrogenase complement(6303617..6304816) Mycobacterium smegmatis str. MC2 155 4535294 YP_890459.1 CDS MSMEG_6240 NC_008596.1 6304953 6306446 R identified by match to protein family HMM PF05762; hypothetical protein complement(6304953..6306446) Mycobacterium smegmatis str. MC2 155 4537653 YP_890460.1 CDS MSMEG_6241 NC_008596.1 6306443 6307501 R identified by match to protein family HMM PF07728; ATPase AAA complement(6306443..6307501) Mycobacterium smegmatis str. MC2 155 4534101 YP_890461.1 CDS MSMEG_6242 NC_008596.1 6307532 6308803 R identified by match to protein family HMM PF00465; alcohol dehydrogenase complement(6307532..6308803) Mycobacterium smegmatis str. MC2 155 4536493 YP_890462.1 CDS MSMEG_6243 NC_008596.1 6308975 6309448 R identified by match to protein family HMM PF07080; response regulator receiver domain-containing protein complement(6308975..6309448) Mycobacterium smegmatis str. MC2 155 4534519 YP_890463.1 CDS MSMEG_6244 NC_008596.1 6309530 6310090 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 6309530..6310090 Mycobacterium smegmatis str. MC2 155 4535015 YP_890464.1 CDS MSMEG_6245 NC_008596.1 6310092 6311297 R identified by match to protein family HMM PF06779; match to protein family HMM PF07690; chloramphenicol resistance protein complement(6310092..6311297) Mycobacterium smegmatis str. MC2 155 4533280 YP_890465.1 CDS MSMEG_6246 NC_008596.1 6311487 6312602 R identified by match to protein family HMM PF00266; pyridoxal-phosphate-dependent transferase complement(6311487..6312602) Mycobacterium smegmatis str. MC2 155 4531386 YP_890466.1 CDS MSMEG_6247 NC_008596.1 6312599 6313564 R hypothetical protein complement(6312599..6313564) Mycobacterium smegmatis str. MC2 155 4537704 YP_890467.1 CDS MSMEG_6248 NC_008596.1 6313576 6314259 R hypothetical protein complement(6313576..6314259) Mycobacterium smegmatis str. MC2 155 4532675 YP_890468.1 CDS MSMEG_6249 NC_008596.1 6314259 6315545 R identified by match to protein family HMM PF03781; hypothetical protein complement(6314259..6315545) Mycobacterium smegmatis str. MC2 155 4533015 YP_890469.1 CDS MSMEG_6250 NC_008596.1 6315542 6316813 R identified by match to protein family HMM PF04107; glutamate--cysteine ligase complement(6315542..6316813) Mycobacterium smegmatis str. MC2 155 4532453 YP_890470.1 CDS MSMEG_6251 NC_008596.1 6316930 6317583 R hypothetical protein complement(6316930..6317583) Mycobacterium smegmatis str. MC2 155 4530991 YP_890471.1 CDS MSMEG_6252 NC_008596.1 6317589 6318017 R hypothetical protein complement(6317589..6318017) Mycobacterium smegmatis str. MC2 155 4534701 YP_890472.1 CDS MSMEG_6253 NC_008596.1 6318227 6318691 R identified by match to protein family HMM PF01475; fur family protein transcriptional regulator complement(6318227..6318691) Mycobacterium smegmatis str. MC2 155 4534109 YP_890473.1 CDS MSMEG_6254 NC_008596.1 6318744 6319214 R hypothetical protein complement(6318744..6319214) Mycobacterium smegmatis str. MC2 155 4533138 YP_890474.1 CDS MSMEG_6255 NC_008596.1 6319355 6320461 R hypothetical protein complement(6319355..6320461) Mycobacterium smegmatis str. MC2 155 4531509 YP_890475.1 CDS asd NC_008596.1 6320473 6321513 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(6320473..6321513) Mycobacterium smegmatis str. MC2 155 4532348 YP_890476.1 CDS MSMEG_6257 NC_008596.1 6321515 6322780 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase complement(6321515..6322780) Mycobacterium smegmatis str. MC2 155 4535118 YP_890477.1 CDS MSMEG_6258 NC_008596.1 6322878 6323498 D identified by match to protein family HMM PF00881; nitroreductase 6322878..6323498 Mycobacterium smegmatis str. MC2 155 4535993 YP_890478.1 CDS amt NC_008596.1 6323614 6324864 D identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter 6323614..6324864 Mycobacterium smegmatis str. MC2 155 4531855 YP_890479.1 CDS glnT NC_008596.1 6324998 6326302 D identified by match to protein family HMM PF00120; match to protein family HMM TIGR03105; glutamine synthetase 6324998..6326302 Mycobacterium smegmatis str. MC2 155 4534835 YP_890480.1 CDS MSMEG_6261 NC_008596.1 6326334 6327203 D identified by match to protein family HMM PF00310; glutamine amidotransferase 6326334..6327203 Mycobacterium smegmatis str. MC2 155 4536853 YP_890481.1 CDS MSMEG_6262 NC_008596.1 6327191 6327886 D identified by match to protein family HMM PF01493; FwdC/FmdC family protein 6327191..6327886 Mycobacterium smegmatis str. MC2 155 4537369 YP_890482.1 CDS MSMEG_6263 NC_008596.1 6327886 6329226 D identified by match to protein family HMM PF01070; match to protein family HMM PF01180; match to protein family HMM PF01645; glutamate synthase 6327886..6329226 Mycobacterium smegmatis str. MC2 155 4534424 YP_890483.1 CDS MSMEG_6264 NC_008596.1 6329223 6330410 D identified by match to protein family HMM PF01266; oxidoreductase 6329223..6330410 Mycobacterium smegmatis str. MC2 155 4535905 YP_890484.1 CDS MSMEG_6265 NC_008596.1 6330437 6331087 D identified by match to protein family HMM PF01381; match to protein family HMM PF07883; transcriptional regulator 6330437..6331087 Mycobacterium smegmatis str. MC2 155 4536669 YP_890485.1 CDS MSMEG_6266 NC_008596.1 6331259 6332059 D thiocyanate hydrolase subunit beta 6331259..6332059 Mycobacterium smegmatis str. MC2 155 4533881 YP_890486.1 CDS MSMEG_6267 NC_008596.1 6332056 6332766 D identified by match to protein family HMM PF02979; thiocyanate hydrolase subunit gamma 6332056..6332766 Mycobacterium smegmatis str. MC2 155 4531923 YP_890487.1 CDS MSMEG_6268 NC_008596.1 6332779 6333120 D ScnB protein 6332779..6333120 Mycobacterium smegmatis str. MC2 155 4531758 YP_890488.1 CDS mgtE NC_008596.1 6333151 6334521 D identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter 6333151..6334521 Mycobacterium smegmatis str. MC2 155 4531043 YP_890489.1 CDS MSMEG_6270 NC_008596.1 6334613 6334762 R hypothetical protein complement(6334613..6334762) Mycobacterium smegmatis str. MC2 155 4537425 YP_890490.1 CDS leuA NC_008596.1 6334688 6336496 D identified by match to protein family HMM PF00682; match to protein family HMM TIGR00970; 2-isopropylmalate synthase 6334688..6336496 Mycobacterium smegmatis str. MC2 155 4532517 YP_890491.1 CDS MSMEG_6272 NC_008596.1 6336680 6339892 D identified by match to protein family HMM PF05088; NAD-glutamate dehydrogenase 6336680..6339892 Mycobacterium smegmatis str. MC2 155 4536818 YP_890492.1 CDS MSMEG_6273 NC_008596.1 6340016 6340402 D integral membrane protein 6340016..6340402 Mycobacterium smegmatis str. MC2 155 4535649 YP_890493.1 CDS MSMEG_6274 NC_008596.1 6340183 6340407 D hypothetical protein 6340183..6340407 Mycobacterium smegmatis str. MC2 155 4532181 YP_890494.1 CDS MSMEG_6275 NC_008596.1 6340409 6341422 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(6340409..6341422) Mycobacterium smegmatis str. MC2 155 4532602 YP_890495.1 CDS MSMEG_6276 NC_008596.1 6341496 6342719 D mur ligase 6341496..6342719 Mycobacterium smegmatis str. MC2 155 4531285 YP_890496.1 CDS MSMEG_6277 NC_008596.1 6342716 6343435 D identified by match to protein family HMM PF07685; cobyric acid synthase 6342716..6343435 Mycobacterium smegmatis str. MC2 155 4536852 YP_890497.1 CDS MSMEG_6278 NC_008596.1 6343526 6344236 R identified by match to protein family HMM PF00753; metallo-beta-lactamase superfamily protein complement(6343526..6344236) Mycobacterium smegmatis str. MC2 155 4533305 YP_890498.1 CDS recR NC_008596.1 6344309 6344920 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(6344309..6344920) Mycobacterium smegmatis str. MC2 155 4536974 YP_890499.1 CDS MSMEG_6280 NC_008596.1 6344931 6345239 R identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein complement(6344931..6345239) Mycobacterium smegmatis str. MC2 155 4534244 YP_890500.1 CDS MSMEG_6281 NC_008596.1 6345388 6346182 D identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase 6345388..6346182 Mycobacterium smegmatis str. MC2 155 4535440 YP_890501.1 CDS MSMEG_6282 NC_008596.1 6346190 6346627 R KanY protein complement(6346190..6346627) Mycobacterium smegmatis str. MC2 155 4535862 YP_890502.1 CDS MSMEG_6283 NC_008596.1 6346717 6348117 D identified by match to protein family HMM PF01565; FAD binding domain-containing protein 6346717..6348117 Mycobacterium smegmatis str. MC2 155 4536301 YP_890503.1 CDS MSMEG_6284 NC_008596.1 6348114 6349427 D identified by match to protein family HMM PF02353; cyclopropane-fatty-acyl-phospholipid synthase 6348114..6349427 Mycobacterium smegmatis str. MC2 155 4532050 YP_890504.1 CDS MSMEG_6285 NC_008596.1 6349463 6351460 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau complement(6349463..6351460) Mycobacterium smegmatis str. MC2 155 4535738 YP_890505.1 CDS MSMEG_6286 NC_008596.1 6351487 6352773 R identified by match to protein family HMM PF00155; aspartate transaminase complement(6351487..6352773) Mycobacterium smegmatis str. MC2 155 4537464 YP_890506.1 CDS MSMEG_6288 NC_008596.1 6353155 6354036 D hypothetical protein 6353155..6354036 Mycobacterium smegmatis str. MC2 155 4532218 YP_890507.1 CDS MSMEG_6289 NC_008596.1 6354081 6355103 D identified by match to protein family HMM PF00089; match to protein family HMM PF00595; trypsin 6354081..6355103 Mycobacterium smegmatis str. MC2 155 4532927 YP_890508.1 CDS MSMEG_6290 NC_008596.1 6355142 6356653 D DNA-binding protein 6355142..6356653 Mycobacterium smegmatis str. MC2 155 4531033 YP_890509.1 CDS MSMEG_6291 NC_008596.1 6356801 6358051 D identified by match to protein family HMM PF01266; D-amino-acid dehydrogenase 6356801..6358051 Mycobacterium smegmatis str. MC2 155 4532644 YP_890510.1 CDS MSMEG_6292 NC_008596.1 6358172 6358645 D identified by match to protein family HMM PF01272; transcription elongation factor GreA 6358172..6358645 Mycobacterium smegmatis str. MC2 155 4532027 YP_890511.1 CDS MSMEG_6293 NC_008596.1 6358686 6359258 D identified by match to protein family HMM PF00440; transcriptional regulatory protein 6358686..6359258 Mycobacterium smegmatis str. MC2 155 4533895 YP_890512.1 CDS MSMEG_6294 NC_008596.1 6359407 6360657 D identified by match to protein family HMM PF02515; caib/baif family protein 6359407..6360657 Mycobacterium smegmatis str. MC2 155 4534653 YP_890513.1 CDS MSMEG_6295 NC_008596.1 6360654 6362012 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; shikimate transporter 6360654..6362012 Mycobacterium smegmatis str. MC2 155 4536805 YP_890514.1 CDS MSMEG_6296 NC_008596.1 6362009 6363139 D identified by match to protein family HMM PF00107; 5-exo-alcohol dehydrogenase 6362009..6363139 Mycobacterium smegmatis str. MC2 155 4534495 YP_890515.1 CDS MSMEG_6297 NC_008596.1 6363136 6364671 D identified by match to protein family HMM PF00171; aldehyde dehydrogenase 6363136..6364671 Mycobacterium smegmatis str. MC2 155 4532728 YP_890516.1 CDS MSMEG_6298 NC_008596.1 6364671 6365567 D identified by match to protein family HMM PF03328; malyl-CoA lyase 6364671..6365567 Mycobacterium smegmatis str. MC2 155 4534549 YP_890517.1 CDS MSMEG_6299 NC_008596.1 6365564 6366517 D identified by match to protein family HMM PF00389; match to protein family HMM PF02826; glyoxylate reductase 6365564..6366517 Mycobacterium smegmatis str. MC2 155 4531806 YP_890518.1 CDS MSMEG_6300 NC_008596.1 6366544 6367221 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 6366544..6367221 Mycobacterium smegmatis str. MC2 155 4536550 YP_890519.1 CDS ligD NC_008596.1 6367237 6368289 R identified by match to protein family HMM TIGR02778; DNA polymerase LigD polymerase subunit complement(6367237..6368289) Mycobacterium smegmatis str. MC2 155 4535759 YP_890520.1 CDS ligC NC_008596.1 6368286 6369332 R catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; in mycobacteria LigC has weak intrinsic nick joining activities and is not essential for growth; ATP-dependent DNA ligase complement(6368286..6369332) Mycobacterium smegmatis str. MC2 155 4533888 YP_890521.1 CDS ligC NC_008596.1 6369392 6370456 D catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; in mycobacteria LigC has weak intrinsic nick joining activities and is not essential for growth; ATP-dependent DNA ligase 6369392..6370456 Mycobacterium smegmatis str. MC2 155 4537064 YP_890522.1 CDS MSMEG_6303 NC_008596.1 6370453 6371685 R identified by match to protein family HMM PF00135; para-nitrobenzyl esterase complement(6370453..6371685) Mycobacterium smegmatis str. MC2 155 4533622 YP_890523.1 CDS MSMEG_6305 NC_008596.1 6371770 6372138 D hypothetical protein 6371770..6372138 Mycobacterium smegmatis str. MC2 155 4532495 YP_890524.1 CDS gltX NC_008596.1 6372152 6373030 D this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase 6372152..6373030 Mycobacterium smegmatis str. MC2 155 4533375 YP_890525.1 CDS MSMEG_6307 NC_008596.1 6373123 6374550 D identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamine-binding periplasmic protein/glutamine transporter permease 6373123..6374550 Mycobacterium smegmatis str. MC2 155 4537145 YP_890526.1 CDS MSMEG_6309 NC_008596.1 6374547 6375320 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 6374547..6375320 Mycobacterium smegmatis str. MC2 155 4532636 YP_890527.1 CDS MSMEG_6308 NC_008596.1 6375317 6375430 R hypothetical protein complement(6375317..6375430) Mycobacterium smegmatis str. MC2 155 4532369 YP_890528.1 CDS MSMEG_6310 NC_008596.1 6375427 6376752 R identified by match to protein family HMM PF02550; 4-hydroxybutyrate CoA-transferase complement(6375427..6376752) Mycobacterium smegmatis str. MC2 155 4531311 YP_890529.1 CDS lys1 NC_008596.1 6376779 6377996 R identified by match to protein family HMM PF03435; saccharopine dehydrogenase complement(6376779..6377996) Mycobacterium smegmatis str. MC2 155 4537318 YP_890530.1 CDS MSMEG_6312 NC_008596.1 6378073 6379317 R identified by match to protein family HMM PF00067; cytochrome P450 complement(6378073..6379317) Mycobacterium smegmatis str. MC2 155 4535593 YP_890531.1 CDS tgt NC_008596.1 6379351 6380595 R identified by match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449; queuine tRNA-ribosyltransferase complement(6379351..6380595) Mycobacterium smegmatis str. MC2 155 4532694 YP_890532.1 CDS MSMEG_6315 NC_008596.1 6380664 6381155 D identified by match to protein family HMM PF05481; lipoprotein LpqH 6380664..6381155 Mycobacterium smegmatis str. MC2 155 4534178 YP_890533.1 CDS MSMEG_6314 NC_008596.1 6381142 6382050 R identified by match to protein family HMM PF00561; haloalkane dehalogenase complement(6381142..6382050) Mycobacterium smegmatis str. MC2 155 4533507 YP_890534.1 CDS MSMEG_6316 NC_008596.1 6382186 6382716 D identified by match to protein family HMM PF05481; lipoprotein LpqH 6382186..6382716 Mycobacterium smegmatis str. MC2 155 4532951 YP_890535.1 CDS MSMEG_6317 NC_008596.1 6382820 6383470 D identified by match to protein family HMM PF00657; lipolytic protein G-D-S-L 6382820..6383470 Mycobacterium smegmatis str. MC2 155 4532379 YP_890536.1 CDS MSMEG_6319 NC_008596.1 6383481 6385259 D identified by match to protein family HMM PF00905; match to protein family HMM PF05223; penicillin-binding protein, transpeptidase 6383481..6385259 Mycobacterium smegmatis str. MC2 155 4534600 YP_890537.1 CDS MSMEG_6318 NC_008596.1 6385224 6386960 R diol dehydratase reactivation protein complement(6385224..6386960) Mycobacterium smegmatis str. MC2 155 4532125 YP_890538.1 CDS MSMEG_6320 NC_008596.1 6386957 6387301 R diol dehydrase subunit gamma complement(6386957..6387301) Mycobacterium smegmatis str. MC2 155 4535724 YP_890539.1 CDS MSMEG_6321 NC_008596.1 6387298 6389571 R identified by match to protein family HMM PF02286; glycerol dehydratase large subunit complement(6387298..6389571) Mycobacterium smegmatis str. MC2 155 4534141 YP_890540.1 CDS MSMEG_6322 NC_008596.1 6389612 6390985 R identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946; bifunctional wax ester synthase/acyl-CoA diacylglycerol acyltransferase complement(6389612..6390985) Mycobacterium smegmatis str. MC2 155 4537099 YP_890541.1 CDS MSMEG_6323 NC_008596.1 6391100 6391510 D hypothetical protein 6391100..6391510 Mycobacterium smegmatis str. MC2 155 4536813 YP_890542.1 CDS MSMEG_6324 NC_008596.1 6391470 6393257 D identified by match to protein family HMM PF03098; peroxidase 6391470..6393257 Mycobacterium smegmatis str. MC2 155 4530953 YP_890543.1 CDS MSMEG_6325 NC_008596.1 6393250 6393789 D identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026; hypothetical protein 6393250..6393789 Mycobacterium smegmatis str. MC2 155 4534971 YP_890544.1 CDS MSMEG_6327 NC_008596.1 6394144 6394593 R identified by match to protein family HMM PF00383; cytidine and deoxycytidylate deaminase complement(6394144..6394593) Mycobacterium smegmatis str. MC2 155 4533802 YP_890545.1 CDS MSMEG_6328 NC_008596.1 6394590 6395096 R hypothetical protein complement(6394590..6395096) Mycobacterium smegmatis str. MC2 155 4533793 YP_890546.1 CDS MSMEG_6330 NC_008596.1 6395196 6396140 D catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase 6395196..6396140 Mycobacterium smegmatis str. MC2 155 4531578 YP_890547.1 CDS MSMEG_6329 NC_008596.1 6396103 6396618 R identified by match to protein family HMM PF06475; hypothetical protein complement(6396103..6396618) Mycobacterium smegmatis str. MC2 155 4532174 YP_890548.1 CDS MSMEG_6331 NC_008596.1 6396702 6397508 R identified by match to protein family HMM PF00528; ABC transporter permease complement(6396702..6397508) Mycobacterium smegmatis str. MC2 155 4537743 YP_890549.1 CDS MSMEG_6332 NC_008596.1 6397505 6398149 R identified by match to protein family HMM PF00528; amino acid ABC transporter permease complement(6397505..6398149) Mycobacterium smegmatis str. MC2 155 4534729 YP_890550.1 CDS MSMEG_6333 NC_008596.1 6398149 6399255 R identified by match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein complement(6398149..6399255) Mycobacterium smegmatis str. MC2 155 4532391 YP_890551.1 CDS MSMEG_6334 NC_008596.1 6399266 6399955 R identified by match to protein family HMM PF04069; ABC transporter substrate-binding protein complement(6399266..6399955) Mycobacterium smegmatis str. MC2 155 4532751 YP_890552.1 CDS MSMEG_6335 NC_008596.1 6399944 6400210 D hypothetical protein 6399944..6400210 Mycobacterium smegmatis str. MC2 155 4537096 YP_890553.1 CDS MSMEG_6336 NC_008596.1 6400335 6400700 D hypothetical protein 6400335..6400700 Mycobacterium smegmatis str. MC2 155 4537231 YP_890554.1 CDS MSMEG_6337 NC_008596.1 6400727 6401740 R identified by match to protein family HMM PF01636; phosphotransferase enzyme family protein complement(6400727..6401740) Mycobacterium smegmatis str. MC2 155 4532304 YP_890555.1 CDS MSMEG_6338 NC_008596.1 6401750 6402358 R identified by match to protein family HMM PF00300; phosphoglycerate mutase complement(6401750..6402358) Mycobacterium smegmatis str. MC2 155 4534778 YP_890556.1 CDS MSMEG_6340 NC_008596.1 6402432 6403187 D identified by match to protein family HMM PF00106; short-chain dehydrogenase/reductase SDR 6402432..6403187 Mycobacterium smegmatis str. MC2 155 4533704 YP_890557.1 CDS MSMEG_6339 NC_008596.1 6403184 6405064 R identified by match to protein family HMM PF00753; metallo-beta-lactamase complement(6403184..6405064) Mycobacterium smegmatis str. MC2 155 4531355 YP_890558.1 CDS MSMEG_6341 NC_008596.1 6405078 6405956 R identified by match to protein family HMM PF01210; match to protein family HMM PF03446; match to protein family HMM PF03807; 6-phosphogluconate dehydrogenase complement(6405078..6405956) Mycobacterium smegmatis str. MC2 155 4530834 YP_890559.1 CDS MSMEG_6342 NC_008596.1 6405953 6406825 R identified by match to protein family HMM PF03446; match to protein family HMM PF03807; oxidoreductase complement(6405953..6406825) Mycobacterium smegmatis str. MC2 155 4536539 YP_890560.1 CDS MSMEG_6344 NC_008596.1 6406923 6407252 D identified by match to protein family HMM PF01638; transcriptional regulator 6406923..6407252 Mycobacterium smegmatis str. MC2 155 4532972 YP_890561.1 CDS MSMEG_6343 NC_008596.1 6407249 6407746 R identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; hypothetical protein complement(6407249..6407746) Mycobacterium smegmatis str. MC2 155 4534683 YP_890562.1 CDS MSMEG_6345 NC_008596.1 6407908 6408258 D hypothetical protein 6407908..6408258 Mycobacterium smegmatis str. MC2 155 4531347 YP_890563.1 CDS MSMEG_6346 NC_008596.1 6408351 6408779 D hypothetical protein 6408351..6408779 Mycobacterium smegmatis str. MC2 155 4535048 YP_890564.1 CDS MSMEG_6347 NC_008596.1 6408748 6409584 D hypothetical protein 6408748..6409584 Mycobacterium smegmatis str. MC2 155 4532415 YP_890565.1 CDS MSMEG_6348 NC_008596.1 6409714 6410292 D hypothetical protein 6409714..6410292 Mycobacterium smegmatis str. MC2 155 4533214 YP_890566.1 CDS hisC NC_008596.1 6410654 6411739 D identified by match to protein family HMM PF00155; match to protein family HMM TIGR01141; aminotransferase 6410654..6411739 Mycobacterium smegmatis str. MC2 155 4535223 YP_890567.1 CDS MSMEG_6352 NC_008596.1 6411736 6412209 D hypothetical protein 6411736..6412209 Mycobacterium smegmatis str. MC2 155 4531061 YP_890568.1 CDS MSMEG_6353 NC_008596.1 6412212 6413027 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 6412212..6413027 Mycobacterium smegmatis str. MC2 155 4534001 YP_890569.1 CDS MSMEG_6354 NC_008596.1 6413230 6413949 D identified by match to protein family HMM PF01083; serine esterase, cutinase 6413230..6413949 Mycobacterium smegmatis str. MC2 155 4536703 YP_890570.1 CDS MSMEG_6355 NC_008596.1 6414246 6414500 D hypothetical protein 6414246..6414500 Mycobacterium smegmatis str. MC2 155 4533126 YP_890571.1 CDS MSMEG_6356 NC_008596.1 6414574 6415206 R identified by match to protein family HMM PF00165; AraC family transcriptional regulator complement(6414574..6415206) Mycobacterium smegmatis str. MC2 155 4537372 YP_890572.1 CDS MSMEG_6357 NC_008596.1 6415525 6415662 R hypothetical protein complement(6415525..6415662) Mycobacterium smegmatis str. MC2 155 4534904 YP_890573.1 CDS MSMEG_6358 NC_008596.1 6415683 6416591 D mesocentin 6415683..6416591 Mycobacterium smegmatis str. MC2 155 4532876 YP_890574.1 CDS MSMEG_6359 NC_008596.1 6416588 6417490 D identified by match to protein family HMM PF00089; trypsin domain-containing protein 6416588..6417490 Mycobacterium smegmatis str. MC2 155 4537417 YP_890575.1 CDS MSMEG_6361 NC_008596.1 6417795 6418307 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(6417795..6418307) Mycobacterium smegmatis str. MC2 155 4532994 YP_890576.1 CDS MSMEG_6362 NC_008596.1 6418375 6419352 D identified by match to protein family HMM PF00107; match to protein family HMM TIGR02824; quinone oxidoreductase 6418375..6419352 Mycobacterium smegmatis str. MC2 155 4530815 YP_890577.1 CDS MSMEG_6363 NC_008596.1 6419371 6420567 R identified by match to protein family HMM PF00266; match to protein family HMM TIGR01976; cysteine desulfurase complement(6419371..6420567) Mycobacterium smegmatis str. MC2 155 4531411 YP_890578.1 CDS MSMEG_6365 NC_008596.1 6421207 6421734 D hypothetical protein 6421207..6421734 Mycobacterium smegmatis str. MC2 155 4532041 YP_890579.1 CDS MSMEG_6366 NC_008596.1 6421742 6422551 D identified by match to protein family HMM PF00005; O-antigen export system, ATP-binding protein 6421742..6422551 Mycobacterium smegmatis str. MC2 155 4533337 YP_890580.1 CDS MSMEG_6367 NC_008596.1 6422538 6423446 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 6422538..6423446 Mycobacterium smegmatis str. MC2 155 4537393 YP_890581.1 CDS MSMEG_6369 NC_008596.1 6423443 6424273 D identified by match to protein family HMM PF01061; O-antigen export system, permease 6423443..6424273 Mycobacterium smegmatis str. MC2 155 4530969 YP_890582.1 CDS MSMEG_6368 NC_008596.1 6424261 6424665 R DNA-binding protein complement(6424261..6424665) Mycobacterium smegmatis str. MC2 155 4537357 YP_890583.1 CDS pcaC NC_008596.1 6424775 6425236 R identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; 4-carboxymuconolactone decarboxylase complement(6424775..6425236) Mycobacterium smegmatis str. MC2 155 4534651 YP_890584.1 CDS MSMEG_6371 NC_008596.1 6425285 6426694 D identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 6425285..6426694 Mycobacterium smegmatis str. MC2 155 4535393 YP_890585.1 CDS MSMEG_6372 NC_008596.1 6426713 6427120 D identified by match to protein family HMM PF04138; membrane protein 6426713..6427120 Mycobacterium smegmatis str. MC2 155 4531598 YP_890586.1 CDS MSMEG_6373 NC_008596.1 6427130 6428068 R identified by match to protein family HMM PF05853; hypothetical protein complement(6427130..6428068) Mycobacterium smegmatis str. MC2 155 4533837 YP_890587.1 CDS panE NC_008596.1 6428080 6429102 R identified by match to protein family HMM PF02558; match to protein family HMM PF03721; match to protein family HMM TIGR00745; 2-dehydropantoate 2-reductase complement(6428080..6429102) Mycobacterium smegmatis str. MC2 155 4533336 YP_890588.1 CDS MSMEG_6375 NC_008596.1 6429099 6430376 R identified by match to protein family HMM PF07690; transporter major facilitator family protein complement(6429099..6430376) Mycobacterium smegmatis str. MC2 155 4536252 YP_890589.1 CDS MSMEG_6376 NC_008596.1 6430444 6431502 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; LacI family transcriptional regulator complement(6430444..6431502) Mycobacterium smegmatis str. MC2 155 4534032 YP_890590.1 CDS MSMEG_6377 NC_008596.1 6431538 6431645 R hypothetical protein complement(6431538..6431645) Mycobacterium smegmatis str. MC2 155 4534391 YP_890591.1 CDS MSMEG_6378 NC_008596.1 6431722 6432624 D identified by match to protein family HMM PF03758; senescence marker protein-30 6431722..6432624 Mycobacterium smegmatis str. MC2 155 4534759 YP_890592.1 CDS MSMEG_6379 NC_008596.1 6432650 6433981 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; transporter major facilitator family protein 6432650..6433981 Mycobacterium smegmatis str. MC2 155 4537519 YP_890593.1 CDS MSMEG_6380 NC_008596.1 6434002 6434412 R hypothetical protein complement(6434002..6434412) Mycobacterium smegmatis str. MC2 155 4533573 YP_890594.1 CDS MSMEG_6381 NC_008596.1 6434939 6436762 R identified by match to protein family HMM PF06259; hypothetical protein complement(6434939..6436762) Mycobacterium smegmatis str. MC2 155 4535716 YP_890595.1 CDS MSMEG_6382 NC_008596.1 6436944 6438350 D identified by match to protein family HMM PF01565; oxidoreductase, FAD-binding 6436944..6438350 Mycobacterium smegmatis str. MC2 155 4532115 YP_890596.1 CDS MSMEG_6383 NC_008596.1 6438415 6438876 D identified by match to protein family HMM PF01475; transcription regulator FurA 6438415..6438876 Mycobacterium smegmatis str. MC2 155 4536312 YP_890597.1 CDS katG NC_008596.1 6438913 6441132 D identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198; catalase/peroxidase HPI 6438913..6441132 Mycobacterium smegmatis str. MC2 155 4536370 YP_890598.1 CDS MSMEG_6385 NC_008596.1 6441262 6442026 D identified by match to protein family HMM PF00106; short chain dehydrogenase 6441262..6442026 Mycobacterium smegmatis str. MC2 155 4536568 YP_890599.1 CDS MSMEG_6386 NC_008596.1 6442032 6443906 D membrane protein 6442032..6443906 Mycobacterium smegmatis str. MC2 155 4535675 YP_890600.1 CDS MSMEG_6387 NC_008596.1 6443929 6447153 D identified by match to protein family HMM PF04602; arabinosyltransferase A 6443929..6447153 Mycobacterium smegmatis str. MC2 155 4530827 YP_890601.1 CDS MSMEG_6388 NC_008596.1 6447287 6450529 D identified by match to protein family HMM PF04602; arabinosyltransferase B 6447287..6450529 Mycobacterium smegmatis str. MC2 155 4532614 YP_890602.1 CDS MSMEG_6389 NC_008596.1 6450526 6453774 D identified by match to protein family HMM PF04602; arabinosyltransferase A 6450526..6453774 Mycobacterium smegmatis str. MC2 155 4534666 YP_890603.1 CDS MSMEG_6390 NC_008596.1 6453932 6455158 D identified by match to protein family HMM PF05977; match to protein family HMM PF07690; transporter major facilitator family protein 6453932..6455158 Mycobacterium smegmatis str. MC2 155 4535545 YP_890604.1 CDS MSMEG_6391 NC_008596.1 6455190 6456743 R identified by match to protein family HMM PF01039; propionyl-CoA carboxylase subunit beta complement(6455190..6456743) Mycobacterium smegmatis str. MC2 155 4535868 YP_890605.1 CDS MSMEG_6392 NC_008596.1 6456740 6462190 R identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801; polyketide synthase complement(6456740..6462190) Mycobacterium smegmatis str. MC2 155 4531096 YP_890606.1 CDS MSMEG_6393 NC_008596.1 6462325 6464217 R activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(6462325..6464217) Mycobacterium smegmatis str. MC2 155 4536267 YP_890607.1 CDS MSMEG_6394 NC_008596.1 6464462 6465475 R hypothetical protein complement(6464462..6465475) Mycobacterium smegmatis str. MC2 155 4532687 YP_890608.1 CDS MSMEG_6395 NC_008596.1 6465494 6465967 R hypothetical protein complement(6465494..6465967) Mycobacterium smegmatis str. MC2 155 4536469 YP_890609.1 CDS MSMEG_6396 NC_008596.1 6466034 6466936 R identified by match to protein family HMM PF00756; antigen 85-C complement(6466034..6466936) Mycobacterium smegmatis str. MC2 155 4532135 YP_890610.1 CDS MSMEG_6397 NC_008596.1 6466940 6467110 R hypothetical protein complement(6466940..6467110) Mycobacterium smegmatis str. MC2 155 4536657 YP_890611.1 CDS MSMEG_6398 NC_008596.1 6467091 6468098 R identified by match to protein family HMM PF00756; antigen 85-A complement(6467091..6468098) Mycobacterium smegmatis str. MC2 155 4534272 YP_890612.1 CDS MSMEG_6399 NC_008596.1 6468235 6469248 R identified by match to protein family HMM PF00756; antigen 85-C complement(6468235..6469248) Mycobacterium smegmatis str. MC2 155 4535515 YP_890613.1 CDS MSMEG_6400 NC_008596.1 6469392 6471329 R transmembrane protein complement(6469392..6471329) Mycobacterium smegmatis str. MC2 155 4532121 YP_890614.1 CDS MSMEG_6401 NC_008596.1 6471409 6472365 R catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate; phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase complement(6471409..6472365) Mycobacterium smegmatis str. MC2 155 4531870 YP_890615.1 CDS MSMEG_6402 NC_008596.1 6472402 6472944 R identified by match to protein family HMM PF01569; PAP2 superfamily protein complement(6472402..6472944) Mycobacterium smegmatis str. MC2 155 4536054 YP_890616.1 CDS MSMEG_6403 NC_008596.1 6472941 6474881 R bifunctional udp-galactofuranosyl transferase glft complement(6472941..6474881) Mycobacterium smegmatis str. MC2 155 4536763 YP_890617.1 CDS glf NC_008596.1 6474878 6476116 R identified by match to protein family HMM PF03275; match to protein family HMM TIGR00031; UDP-galactopyranose mutase complement(6474878..6476116) Mycobacterium smegmatis str. MC2 155 4534537 YP_890618.1 CDS MSMEG_6405 NC_008596.1 6476344 6477261 D Erp protein 6476344..6477261 Mycobacterium smegmatis str. MC2 155 4536177 YP_890619.1 CDS MSMEG_6406 NC_008596.1 6477408 6479018 D identified by match to protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase 6477408..6479018 Mycobacterium smegmatis str. MC2 155 4536917 YP_890620.1 CDS MSMEG_6407 NC_008596.1 6479076 6479900 R identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; cof family hydrolase complement(6479076..6479900) Mycobacterium smegmatis str. MC2 155 4534570 YP_890621.1 CDS MSMEG_6408 NC_008596.1 6479897 6480658 R identified by match to protein family HMM PF01553; acyltransferase complement(6479897..6480658) Mycobacterium smegmatis str. MC2 155 4537173 YP_890622.1 CDS MSMEG_6409 NC_008596.1 6480665 6481456 R identified by match to protein family HMM PF01553; acyltransferase complement(6480665..6481456) Mycobacterium smegmatis str. MC2 155 4531153 YP_890623.1 CDS MSMEG_6410 NC_008596.1 6481598 6483154 D identified by match to protein family HMM PF00355; Rieske 2Fe-2S family protein 6481598..6483154 Mycobacterium smegmatis str. MC2 155 4530968 YP_890624.1 CDS MSMEG_6411 NC_008596.1 6483151 6483483 D hypothetical protein 6483151..6483483 Mycobacterium smegmatis str. MC2 155 4535672 YP_890625.1 CDS MSMEG_6412 NC_008596.1 6483487 6484305 R hypothetical protein complement(6483487..6484305) Mycobacterium smegmatis str. MC2 155 4533368 YP_890626.1 CDS serS NC_008596.1 6484302 6485555 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(6484302..6485555) Mycobacterium smegmatis str. MC2 155 4531455 YP_890627.1 CDS MSMEG_6414 NC_008596.1 6485712 6487163 D hypothetical protein 6485712..6487163 Mycobacterium smegmatis str. MC2 155 4536736 YP_890628.1 CDS MSMEG_6415 NC_008596.1 6487173 6487517 D identified by match to protein family HMM PF06262; hypothetical protein 6487173..6487517 Mycobacterium smegmatis str. MC2 155 4530837 YP_890629.1 CDS MSMEG_6417 NC_008596.1 6487586 6487774 D hypothetical protein 6487586..6487774 Mycobacterium smegmatis str. MC2 155 4536258 YP_890630.1 CDS MSMEG_6416 NC_008596.1 6487771 6488457 R identified by match to protein family HMM PF00300; phosphoglycerate mutase complement(6487771..6488457) Mycobacterium smegmatis str. MC2 155 4536748 YP_890631.1 CDS MSMEG_6418 NC_008596.1 6488454 6489386 R catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; prephenate dehydratase complement(6488454..6489386) Mycobacterium smegmatis str. MC2 155 4534511 YP_890632.1 CDS MSMEG_6419 NC_008596.1 6489515 6490300 D hypothetical protein 6489515..6490300 Mycobacterium smegmatis str. MC2 155 4536718 YP_890633.1 CDS MSMEG_6420 NC_008596.1 6490338 6491120 D identified by match to protein family HMM PF02517; abortive infection protein 6490338..6491120 Mycobacterium smegmatis str. MC2 155 4530984 YP_890634.1 CDS MSMEG_6421 NC_008596.1 6490613 6492484 D identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; transcriptional regulator 6490613..6492484 Mycobacterium smegmatis str. MC2 155 4531336 YP_890635.1 CDS MSMEG_6422 NC_008596.1 6492624 6493169 D identified by match to protein family HMM PF00210; ferritin family protein 6492624..6493169 Mycobacterium smegmatis str. MC2 155 4532622 YP_890636.1 CDS MSMEG_6423 NC_008596.1 6493183 6494028 R identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase complement(6493183..6494028) Mycobacterium smegmatis str. MC2 155 4534108 YP_890637.1 CDS MSMEG_6424 NC_008596.1 6494033 6495190 R transmembrane protein complement(6494033..6495190) Mycobacterium smegmatis str. MC2 155 4537634 YP_890638.1 CDS MSMEG_6425 NC_008596.1 6495219 6495560 R identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein complement(6495219..6495560) Mycobacterium smegmatis str. MC2 155 4537359 YP_890639.1 CDS MSMEG_6426 NC_008596.1 6496047 6496190 D hypothetical protein 6496047..6496190 Mycobacterium smegmatis str. MC2 155 4535536 YP_890640.1 CDS MSMEG_6427 NC_008596.1 6496331 6496954 D identified by match to protein family HMM PF00081; match to protein family HMM PF02777; [Mn] superoxide dismutase 6496331..6496954 Mycobacterium smegmatis str. MC2 155 4532831 YP_890641.1 CDS MSMEG_6428 NC_008596.1 6497167 6497700 D hypothetical protein 6497167..6497700 Mycobacterium smegmatis str. MC2 155 4535730 YP_890642.1 CDS MSMEG_6429 NC_008596.1 6497733 6497888 R hypothetical protein complement(6497733..6497888) Mycobacterium smegmatis str. MC2 155 4531728 YP_890643.1 CDS MSMEG_6430 NC_008596.1 6498318 6500012 R hypothetical protein complement(6498318..6500012) Mycobacterium smegmatis str. MC2 155 4533625 YP_890644.1 CDS MSMEG_6431 NC_008596.1 6498402 6498830 D hypothetical protein 6498402..6498830 Mycobacterium smegmatis str. MC2 155 4533891 YP_890645.1 CDS MSMEG_6432 NC_008596.1 6500009 6500470 R hypothetical protein complement(6500009..6500470) Mycobacterium smegmatis str. MC2 155 4531313 YP_890646.1 CDS MSMEG_6433 NC_008596.1 6500573 6501679 R hypothetical protein complement(6500573..6501679) Mycobacterium smegmatis str. MC2 155 4536929 YP_890647.1 CDS MSMEG_6434 NC_008596.1 6501891 6502547 D hypothetical protein 6501891..6502547 Mycobacterium smegmatis str. MC2 155 4534905 YP_890648.1 CDS MSMEG_6435 NC_008596.1 6502555 6503088 D hypothetical protein 6502555..6503088 Mycobacterium smegmatis str. MC2 155 4535164 YP_890649.1 CDS MSMEG_6436 NC_008596.1 6503125 6503676 D identified by match to protein family HMM PF04234; copper resistance protein CopC 6503125..6503676 Mycobacterium smegmatis str. MC2 155 4537644 YP_890650.1 CDS MSMEG_6437 NC_008596.1 6503688 6504617 D identified by match to protein family HMM PF05425; copper resistance protein D 6503688..6504617 Mycobacterium smegmatis str. MC2 155 4533907 YP_890651.1 CDS MSMEG_6438 NC_008596.1 6504708 6505196 D hypothetical protein 6504708..6505196 Mycobacterium smegmatis str. MC2 155 4531526 YP_890652.1 CDS MSMEG_6439 NC_008596.1 6505226 6505705 D regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 6505226..6505705 Mycobacterium smegmatis str. MC2 155 4535056 YP_890653.1 CDS MSMEG_6440 NC_008596.1 6505769 6507247 R monooxygenase, flavin-binding family protein complement(6505769..6507247) Mycobacterium smegmatis str. MC2 155 4537741 YP_890654.1 CDS MSMEG_6441 NC_008596.1 6507325 6507978 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 6507325..6507978 Mycobacterium smegmatis str. MC2 155 4535770 YP_890655.1 CDS dinP NC_008596.1 6508015 6509226 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 6508015..6509226 Mycobacterium smegmatis str. MC2 155 4534372 YP_890656.1 CDS MSMEG_6442 NC_008596.1 6509223 6509585 R integral membrane protein complement(6509223..6509585) Mycobacterium smegmatis str. MC2 155 4533812 YP_890657.1 CDS MSMEG_6444 NC_008596.1 6509624 6509908 D hypothetical protein 6509624..6509908 Mycobacterium smegmatis str. MC2 155 4537432 YP_890658.1 CDS MSMEG_6445 NC_008596.1 6509909 6510913 R identified by match to protein family HMM PF02811; hypothetical protein complement(6509909..6510913) Mycobacterium smegmatis str. MC2 155 4533911 YP_890659.1 CDS MSMEG_6446 NC_008596.1 6511011 6512072 D hypothetical protein 6511011..6512072 Mycobacterium smegmatis str. MC2 155 4536476 YP_890660.1 CDS MSMEG_6447 NC_008596.1 6512085 6512408 D hypothetical protein 6512085..6512408 Mycobacterium smegmatis str. MC2 155 4533933 YP_890661.1 CDS MSMEG_6448 NC_008596.1 6512567 6512938 R hypothetical protein complement(6512567..6512938) Mycobacterium smegmatis str. MC2 155 4532943 YP_890662.1 CDS MSMEG_6449 NC_008596.1 6512612 6512932 D hypothetical protein 6512612..6512932 Mycobacterium smegmatis str. MC2 155 4531141 YP_890663.1 CDS MSMEG_6450 NC_008596.1 6512987 6514384 D hypothetical protein 6512987..6514384 Mycobacterium smegmatis str. MC2 155 4535901 YP_890664.1 CDS MSMEG_6451 NC_008596.1 6514667 6515059 D identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 6514667..6515059 Mycobacterium smegmatis str. MC2 155 4535609 YP_890665.1 CDS MSMEG_6453 NC_008596.1 6515062 6516696 D identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; sulfate permease 6515062..6516696 Mycobacterium smegmatis str. MC2 155 4537329 YP_890666.1 CDS MSMEG_6452 NC_008596.1 6516693 6518045 R identified by match to protein family HMM PF00171; [NADP+] succinate-semialdehyde dehydrogenase complement(6516693..6518045) Mycobacterium smegmatis str. MC2 155 4533243 YP_890667.1 CDS MSMEG_6454 NC_008596.1 6518199 6519053 D identified by match to protein family HMM PF00296; hypothetical protein 6518199..6519053 Mycobacterium smegmatis str. MC2 155 4531373 YP_890668.1 CDS MSMEG_6455 NC_008596.1 6519063 6519647 R hypothetical protein complement(6519063..6519647) Mycobacterium smegmatis str. MC2 155 4533412 YP_890669.1 CDS MSMEG_6456 NC_008596.1 6519757 6519897 R hypothetical protein complement(6519757..6519897) Mycobacterium smegmatis str. MC2 155 4531929 YP_890670.1 CDS MSMEG_6457 NC_008596.1 6520166 6520669 D identified by match to protein family HMM PF00174; oxidoreductase molybdopterin binding subunit 6520166..6520669 Mycobacterium smegmatis str. MC2 155 4534434 YP_890671.1 CDS gltD NC_008596.1 6520673 6522139 R glutamate synthase is composed of subunits alpha and beta; subunit beta is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the subunit alpha, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta complement(6520673..6522139) Mycobacterium smegmatis str. MC2 155 4537412 YP_890672.1 CDS MSMEG_6459 NC_008596.1 6522132 6526760 R identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898; ferredoxin-dependent glutamate synthase 1 complement(6522132..6526760) Mycobacterium smegmatis str. MC2 155 4534175 YP_890673.1 CDS MSMEG_6460 NC_008596.1 6526677 6526865 D hypothetical protein 6526677..6526865 Mycobacterium smegmatis str. MC2 155 4536405 YP_890674.1 CDS MSMEG_6461 NC_008596.1 6526946 6527449 R hypothetical protein complement(6526946..6527449) Mycobacterium smegmatis str. MC2 155 4537227 YP_890675.1 CDS MSMEG_6462 NC_008596.1 6527168 6528490 D identified by similarity to GP:150005; match to protein family HMM PF01610; IS1096, tnpA protein 6527168..6528490 Mycobacterium smegmatis str. MC2 155 4534849 YP_890676.1 CDS MSMEG_6463 NC_008596.1 6528498 6529199 R identified by similarity to GP:150004; match to protein family HMM PF07929; IS1096, tnpR protein complement(6528498..6529199) Mycobacterium smegmatis str. MC2 155 4535364 YP_890677.1 CDS MSMEG_6464 NC_008596.1 6529689 6530489 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; hypothetical protein 6529689..6530489 Mycobacterium smegmatis str. MC2 155 4530908 YP_890678.1 CDS MSMEG_6465 NC_008596.1 6530521 6531897 D identified by match to protein family HMM PF00654; chloride channel 6530521..6531897 Mycobacterium smegmatis str. MC2 155 4533792 YP_890679.1 CDS MSMEG_6466 NC_008596.1 6532006 6532779 D identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; aquaporin Z 6532006..6532779 Mycobacterium smegmatis str. MC2 155 4534568 YP_890680.1 CDS MSMEG_6467 NC_008596.1 6532853 6533404 R identified by match to protein family HMM PF00210; starvation-induced DNA protecting protein complement(6532853..6533404) Mycobacterium smegmatis str. MC2 155 4537312 YP_890681.1 CDS MSMEG_6468 NC_008596.1 6533466 6534350 R hypothetical protein complement(6533466..6534350) Mycobacterium smegmatis str. MC2 155 4536417 YP_890682.1 CDS MSMEG_6469 NC_008596.1 6534409 6534834 R identified by match to protein family HMM PF04248; hypothetical protein complement(6534409..6534834) Mycobacterium smegmatis str. MC2 155 4535873 YP_890683.1 CDS MSMEG_6470 NC_008596.1 6535030 6535236 D hypothetical protein 6535030..6535236 Mycobacterium smegmatis str. MC2 155 4532839 YP_890684.1 CDS MSMEG_6471 NC_008596.1 6535287 6536726 R identified by match to protein family HMM PF01266; glycine/D-amino acid oxidase complement(6535287..6536726) Mycobacterium smegmatis str. MC2 155 4535637 YP_890685.1 CDS MSMEG_6472 NC_008596.1 6536834 6537058 D hypothetical protein 6536834..6537058 Mycobacterium smegmatis str. MC2 155 4537368 YP_890686.1 CDS MSMEG_6473 NC_008596.1 6537143 6537961 R identified by match to protein family HMM PF02409; tetracenomycin polyketide synthesis O-methyltransferase TcmP complement(6537143..6537961) Mycobacterium smegmatis str. MC2 155 4536950 YP_890687.1 CDS MSMEG_6474 NC_008596.1 6538024 6539046 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; nucleoside-diphosphate-sugar epimerase complement(6538024..6539046) Mycobacterium smegmatis str. MC2 155 4535302 YP_890688.1 CDS MSMEG_6475 NC_008596.1 6539043 6539543 R hypothetical protein complement(6539043..6539543) Mycobacterium smegmatis str. MC2 155 4531643 YP_890689.1 CDS MSMEG_6476 NC_008596.1 6539586 6539978 R hypothetical protein complement(6539586..6539978) Mycobacterium smegmatis str. MC2 155 4537350 YP_890690.1 CDS msrA NC_008596.1 6540054 6540569 D this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 6540054..6540569 Mycobacterium smegmatis str. MC2 155 4534468 YP_890691.1 CDS MSMEG_6478 NC_008596.1 6540573 6541916 R identified by match to protein family HMM PF00067; cytochrome P450 complement(6540573..6541916) Mycobacterium smegmatis str. MC2 155 4536025 YP_890692.1 CDS MSMEG_6480 NC_008596.1 6542006 6542638 D identified by match to protein family HMM PF00440; transcriptional regulatory protein 6542006..6542638 Mycobacterium smegmatis str. MC2 155 4533295 YP_890693.1 CDS MSMEG_6479 NC_008596.1 6542615 6543184 R identified by match to protein family HMM PF00440; transcriptional regulator complement(6542615..6543184) Mycobacterium smegmatis str. MC2 155 4536470 YP_890694.1 CDS MSMEG_6482 NC_008596.1 6543238 6543909 D hypothetical protein 6543238..6543909 Mycobacterium smegmatis str. MC2 155 4532397 YP_890695.1 CDS MSMEG_6481 NC_008596.1 6543906 6544952 R hypothetical protein complement(6543906..6544952) Mycobacterium smegmatis str. MC2 155 4533390 YP_890696.1 CDS MSMEG_6483 NC_008596.1 6544983 6545705 R methyltransferase type 11 complement(6544983..6545705) Mycobacterium smegmatis str. MC2 155 4536625 YP_890697.1 CDS MSMEG_6484 NC_008596.1 6545699 6546940 R identified by match to protein family HMM PF00534; glycosyl transferase family protein complement(6545699..6546940) Mycobacterium smegmatis str. MC2 155 4535807 YP_890698.1 CDS MSMEG_6485 NC_008596.1 6547061 6547516 R identified by match to protein family HMM PF01243; ATP-binding protein complement(6547061..6547516) Mycobacterium smegmatis str. MC2 155 4535466 YP_890699.1 CDS MSMEG_6486 NC_008596.1 6547545 6548576 R identified by match to protein family HMM PF00724; FAD/FMN-binding oxidoreductase complement(6547545..6548576) Mycobacterium smegmatis str. MC2 155 4533575 YP_890700.1 CDS MSMEG_6487 NC_008596.1 6548602 6549669 R identified by match to protein family HMM PF04909; 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2, 4-dienoate decarboxylase complement(6548602..6549669) Mycobacterium smegmatis str. MC2 155 4533931 YP_890701.1 CDS MSMEG_6488 NC_008596.1 6549677 6550114 R hypothetical protein complement(6549677..6550114) Mycobacterium smegmatis str. MC2 155 4536826 YP_890702.1 CDS MSMEG_6489 NC_008596.1 6550150 6551340 R identified by match to protein family HMM PF01494; hypothetical protein complement(6550150..6551340) Mycobacterium smegmatis str. MC2 155 4532137 YP_890703.1 CDS MSMEG_6490 NC_008596.1 6551337 6552680 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator superfamily protein complement(6551337..6552680) Mycobacterium smegmatis str. MC2 155 4531005 YP_890704.1 CDS MSMEG_6491 NC_008596.1 6552753 6554252 R identified by match to protein family HMM PF00171; aldehyde dehydrogenase complement(6552753..6554252) Mycobacterium smegmatis str. MC2 155 4532780 YP_890705.1 CDS MSMEG_6492 NC_008596.1 6554465 6556201 D identified by match to protein family HMM PF01590; GAF domain-containing protein 6554465..6556201 Mycobacterium smegmatis str. MC2 155 4536479 YP_890706.1 CDS MSMEG_6493 NC_008596.1 6556372 6557424 D hypothetical protein 6556372..6557424 Mycobacterium smegmatis str. MC2 155 4533260 YP_890707.1 CDS MSMEG_6494 NC_008596.1 6557421 6558251 D identified by match to protein family HMM PF00528; nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein 6557421..6558251 Mycobacterium smegmatis str. MC2 155 4534923 YP_890708.1 CDS MSMEG_6495 NC_008596.1 6558248 6559027 D identified by match to protein family HMM PF00528; nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein 6558248..6559027 Mycobacterium smegmatis str. MC2 155 4535252 YP_890709.1 CDS MSMEG_6496 NC_008596.1 6559046 6559807 D identified by match to protein family HMM PF00005; nitrate/sulfonate/bicarbonate ABC transporter ATPase subunit 6559046..6559807 Mycobacterium smegmatis str. MC2 155 4536063 YP_890710.1 CDS MSMEG_6497 NC_008596.1 6559895 6560428 R hypothetical protein complement(6559895..6560428) Mycobacterium smegmatis str. MC2 155 4534474 YP_890711.1 CDS MSMEG_6498 NC_008596.1 6560543 6560836 D hypothetical protein 6560543..6560836 Mycobacterium smegmatis str. MC2 155 4535174 YP_890712.1 CDS MSMEG_6499 NC_008596.1 6560975 6561772 D identified by match to protein family HMM PF04248; hypothetical protein 6560975..6561772 Mycobacterium smegmatis str. MC2 155 4534719 YP_890713.1 CDS MSMEG_6500 NC_008596.1 6561852 6563714 D hypothetical protein 6561852..6563714 Mycobacterium smegmatis str. MC2 155 4532885 YP_890714.1 CDS MSMEG_6501 NC_008596.1 6563711 6563923 D hypothetical protein 6563711..6563923 Mycobacterium smegmatis str. MC2 155 4534134 YP_890715.1 CDS MSMEG_6502 NC_008596.1 6563920 6564363 D hypothetical protein 6563920..6564363 Mycobacterium smegmatis str. MC2 155 4535614 YP_890716.1 CDS MSMEG_6504 NC_008596.1 6564360 6565652 D hypothetical protein 6564360..6565652 Mycobacterium smegmatis str. MC2 155 4533181 YP_890717.1 CDS MSMEG_6503 NC_008596.1 6565649 6566215 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(6565649..6566215) Mycobacterium smegmatis str. MC2 155 4532152 YP_890718.1 CDS MSMEG_6505 NC_008596.1 6566306 6567010 D identified by match to protein family HMM PF00881; NfnB protein 6566306..6567010 Mycobacterium smegmatis str. MC2 155 4535391 YP_890719.1 CDS MSMEG_6506 NC_008596.1 6567028 6567579 D identified by match to protein family HMM PF00857; nicotinamidase/pyrazinamidase 6567028..6567579 Mycobacterium smegmatis str. MC2 155 4536985 YP_890720.1 CDS glgX NC_008596.1 6567776 6569893 D identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100; glycogen debranching protein GlgX 6567776..6569893 Mycobacterium smegmatis str. MC2 155 4535183 YP_890721.1 CDS MSMEG_6508 NC_008596.1 6570166 6570633 D identified by match to protein family HMM PF01047; match to protein family HMM PF03965; MarR family transcriptional regulator 6570166..6570633 Mycobacterium smegmatis str. MC2 155 4531450 YP_890722.1 CDS MSMEG_6509 NC_008596.1 6570630 6571499 D identified by match to protein family HMM PF00005; multidrug ABC transporter ATP-binding protein 6570630..6571499 Mycobacterium smegmatis str. MC2 155 4535420 YP_890723.1 CDS MSMEG_6510 NC_008596.1 6571489 6572292 D identified by match to protein family HMM PF01061; multidrug ABC transporter 6571489..6572292 Mycobacterium smegmatis str. MC2 155 4533534 YP_890724.1 CDS MSMEG_6511 NC_008596.1 6572351 6573508 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase 6572351..6573508 Mycobacterium smegmatis str. MC2 155 4536191 YP_890725.1 CDS MSMEG_6512 NC_008596.1 6573517 6574626 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase 6573517..6574626 Mycobacterium smegmatis str. MC2 155 4531286 YP_890726.1 CDS MSMEG_6513 NC_008596.1 6574647 6576638 R identified by match to protein family HMM PF07690; membrane transporter complement(6574647..6576638) Mycobacterium smegmatis str. MC2 155 4536018 YP_890727.1 CDS MSMEG_6514 NC_008596.1 6576690 6578015 R trehalose synthase-fused maltokinase complement(6576690..6578015) Mycobacterium smegmatis str. MC2 155 4533352 YP_890728.1 CDS treS NC_008596.1 6578012 6579793 R identified by match to protein family HMM PF00128; match to protein family HMM TIGR02456; trehalose synthase complement(6578012..6579793) Mycobacterium smegmatis str. MC2 155 4533171 YP_890729.1 CDS MSMEG_6517 NC_008596.1 6579767 6579907 D hypothetical protein 6579767..6579907 Mycobacterium smegmatis str. MC2 155 4531563 YP_890730.1 CDS MSMEG_6516 NC_008596.1 6579893 6580066 R hypothetical protein complement(6579893..6580066) Mycobacterium smegmatis str. MC2 155 4531540 YP_890731.1 CDS MSMEG_6518 NC_008596.1 6580067 6580456 D hypothetical protein 6580067..6580456 Mycobacterium smegmatis str. MC2 155 4530824 YP_890732.1 CDS MSMEG_6519 NC_008596.1 6580577 6581377 D identified by match to protein family HMM PF01243; pyridoxamine 5'-phosphate oxidase 6580577..6581377 Mycobacterium smegmatis str. MC2 155 4532939 YP_890733.1 CDS MSMEG_6520 NC_008596.1 6581422 6582000 D identified by match to protein family HMM PF00156; orotate phosphoribosyltransferase 6581422..6582000 Mycobacterium smegmatis str. MC2 155 4534867 YP_890734.1 CDS MSMEG_6521 NC_008596.1 6582005 6583069 R identified by match to protein family HMM PF00005; match to protein family HMM PF03459; sulfate/thiosulfate import ATP-binding protein CysA 2 complement(6582005..6583069) Mycobacterium smegmatis str. MC2 155 4537071 YP_890735.1 CDS MSMEG_6522 NC_008596.1 6583066 6583887 R identified by match to protein family HMM PF00528; ABC transporter inner membrane protein complement(6583066..6583887) Mycobacterium smegmatis str. MC2 155 4530902 YP_890736.1 CDS MSMEG_6523 NC_008596.1 6583884 6584744 R identified by match to protein family HMM PF00528; ABC transporter complement(6583884..6584744) Mycobacterium smegmatis str. MC2 155 4534554 YP_890737.1 CDS MSMEG_6524 NC_008596.1 6584753 6585904 R polyamine/opine/phosphonate ABC transporter periplasmic ligand-binding protein complement(6584753..6585904) Mycobacterium smegmatis str. MC2 155 4534737 YP_890738.1 CDS MSMEG_6525 NC_008596.1 6586134 6586640 D hypothetical protein 6586134..6586640 Mycobacterium smegmatis str. MC2 155 4534982 YP_890739.1 CDS MSMEG_6526 NC_008596.1 6586660 6587088 D identified by match to protein family HMM PF01243; pyridoxamine 5'-phosphate oxidase 6586660..6587088 Mycobacterium smegmatis str. MC2 155 4531434 YP_890740.1 CDS MSMEG_6527 NC_008596.1 6587093 6587698 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(6587093..6587698) Mycobacterium smegmatis str. MC2 155 4537707 YP_890741.1 CDS MSMEG_6528 NC_008596.1 6587895 6588647 D hypothetical protein 6587895..6588647 Mycobacterium smegmatis str. MC2 155 4535344 YP_890742.1 CDS MSMEG_6529 NC_008596.1 6588644 6589393 D hypothetical protein 6588644..6589393 Mycobacterium smegmatis str. MC2 155 4535204 YP_890743.1 CDS MSMEG_6530 NC_008596.1 6589413 6589988 D identified by match to protein family HMM PF00510; cytochrome C oxidase subunit III family protein 6589413..6589988 Mycobacterium smegmatis str. MC2 155 4532378 YP_890744.1 CDS MSMEG_6531 NC_008596.1 6589990 6590283 D hypothetical protein 6589990..6590283 Mycobacterium smegmatis str. MC2 155 4531649 YP_890745.1 CDS MSMEG_6532 NC_008596.1 6590293 6590910 D identified by match to protein family HMM PF00440; transcriptional regulatory protein 6590293..6590910 Mycobacterium smegmatis str. MC2 155 4533811 YP_890746.1 CDS MSMEG_6533 NC_008596.1 6590911 6591837 R hypothetical protein complement(6590911..6591837) Mycobacterium smegmatis str. MC2 155 4531068 YP_890747.1 CDS MSMEG_6534 NC_008596.1 6591922 6592053 R hypothetical protein complement(6591922..6592053) Mycobacterium smegmatis str. MC2 155 4533274 YP_890748.1 CDS fusA NC_008596.1 6592036 6594231 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 6592036..6594231 Mycobacterium smegmatis str. MC2 155 4534984 YP_890749.1 CDS MSMEG_6536 NC_008596.1 6594233 6594799 R identified by match to protein family HMM PF02627; carboxymuconolactone decarboxylase complement(6594233..6594799) Mycobacterium smegmatis str. MC2 155 4531226 YP_890750.1 CDS MSMEG_6537 NC_008596.1 6594900 6595475 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 6594900..6595475 Mycobacterium smegmatis str. MC2 155 4536650 YP_890751.1 CDS MSMEG_6538 NC_008596.1 6595503 6596210 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; 3-oxoacyl-ACP reductase 6595503..6596210 Mycobacterium smegmatis str. MC2 155 4534489 YP_890752.1 CDS MSMEG_6540 NC_008596.1 6596379 6597620 D identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996; virulence factor Mce family protein 6596379..6597620 Mycobacterium smegmatis str. MC2 155 4533696 YP_890753.1 CDS MSMEG_6539 NC_008596.1 6597610 6598509 R hypothetical protein complement(6597610..6598509) Mycobacterium smegmatis str. MC2 155 4533077 YP_890754.1 CDS MSMEG_6541 NC_008596.1 6598543 6598893 R identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; anti-sigma factor antagonist complement(6598543..6598893) Mycobacterium smegmatis str. MC2 155 4531799 YP_890755.1 CDS MSMEG_6542 NC_008596.1 6598890 6599987 R identified by match to protein family HMM PF02310; B12-binding domain-containing protein complement(6598890..6599987) Mycobacterium smegmatis str. MC2 155 4536485 YP_890756.1 CDS MSMEG_6544 NC_008596.1 6601673 6601822 R transporter complement(6601673..6601822) Mycobacterium smegmatis str. MC2 155 4535407 YP_890757.1 CDS MSMEG_6545 NC_008596.1 6602127 6602834 R identified by match to protein family HMM PF00300; phosphoglycerate mutase complement(6602127..6602834) Mycobacterium smegmatis str. MC2 155 4537085 YP_890758.1 CDS MSMEG_6546 NC_008596.1 6602836 6603639 R identified by match to protein family HMM PF00165; transcriptional regulatory protein complement(6602836..6603639) Mycobacterium smegmatis str. MC2 155 4531577 YP_890759.1 CDS MSMEG_6547 NC_008596.1 6603696 6604958 D identified by match to protein family HMM PF04909; amidohydrolase 6603696..6604958 Mycobacterium smegmatis str. MC2 155 4535221 YP_890760.1 CDS MSMEG_6548 NC_008596.1 6604992 6605408 R identified by match to protein family HMM PF00355; Rieske iron-sulfur protein complement(6604992..6605408) Mycobacterium smegmatis str. MC2 155 4533753 YP_890761.1 CDS MSMEG_6549 NC_008596.1 6605424 6606014 R hypothetical protein complement(6605424..6606014) Mycobacterium smegmatis str. MC2 155 4535127 YP_890762.1 CDS MSMEG_6550 NC_008596.1 6605939 6606169 R hypothetical protein complement(6605939..6606169) Mycobacterium smegmatis str. MC2 155 4531028 YP_890763.1 CDS MSMEG_6551 NC_008596.1 6606004 6606516 R hypothetical protein complement(6606004..6606516) Mycobacterium smegmatis str. MC2 155 4531553 YP_890764.1 CDS MSMEG_6552 NC_008596.1 6606582 6607028 R hypothetical protein complement(6606582..6607028) Mycobacterium smegmatis str. MC2 155 4533246 YP_890765.1 CDS MSMEG_6553 NC_008596.1 6607155 6608885 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(6607155..6608885) Mycobacterium smegmatis str. MC2 155 4532235 YP_890766.1 CDS MSMEG_6554 NC_008596.1 6608882 6611464 R identified by match to protein family HMM PF00005; match to protein family HMM PF00970; match to protein family HMM PF04954; match to protein family HMM PF08021; ABC transporter ATP-binding protein complement(6608882..6611464) Mycobacterium smegmatis str. MC2 155 4532499 YP_890767.1 CDS MSMEG_6555 NC_008596.1 6611464 6612174 R TetR family transcriptional regulator complement(6611464..6612174) Mycobacterium smegmatis str. MC2 155 4532862 YP_890768.1 CDS MSMEG_6556 NC_008596.1 6612275 6612889 D identified by match to protein family HMM PF00440; transcriptional regulator 6612275..6612889 Mycobacterium smegmatis str. MC2 155 4536107 YP_890769.1 CDS MSMEG_6558 NC_008596.1 6612886 6613542 D identified by match to protein family HMM PF00378; enoyl-CoA hydratase 6612886..6613542 Mycobacterium smegmatis str. MC2 155 4531729 YP_890770.1 CDS MSMEG_6557 NC_008596.1 6613539 6614441 R identified by match to protein family HMM PF00106; dehydrogenase complement(6613539..6614441) Mycobacterium smegmatis str. MC2 155 4532958 YP_890771.1 CDS MSMEG_6559 NC_008596.1 6614451 6614735 R hypothetical protein complement(6614451..6614735) Mycobacterium smegmatis str. MC2 155 4534761 YP_890772.1 CDS MSMEG_6560 NC_008596.1 6614824 6615246 R identified by match to protein family HMM PF01796; acyl dehydratase complement(6614824..6615246) Mycobacterium smegmatis str. MC2 155 4537640 YP_890773.1 CDS MSMEG_6561 NC_008596.1 6615249 6616469 R nonspecific lipid-transfer protein complement(6615249..6616469) Mycobacterium smegmatis str. MC2 155 4535992 YP_890774.1 CDS MSMEG_6562 NC_008596.1 6616478 6618736 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase complement(6616478..6618736) Mycobacterium smegmatis str. MC2 155 4534501 YP_890775.1 CDS MSMEG_6563 NC_008596.1 6618733 6619743 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; dihydrokaempferol 4-reductase complement(6618733..6619743) Mycobacterium smegmatis str. MC2 155 4533086 YP_890776.1 CDS MSMEG_6564 NC_008596.1 6619839 6620408 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 6619839..6620408 Mycobacterium smegmatis str. MC2 155 4533773 YP_890777.1 CDS MSMEG_6565 NC_008596.1 6620411 6621100 R hypothetical protein complement(6620411..6621100) Mycobacterium smegmatis str. MC2 155 4535251 YP_890778.1 CDS MSMEG_6566 NC_008596.1 6621103 6621258 R hypothetical protein complement(6621103..6621258) Mycobacterium smegmatis str. MC2 155 4531126 YP_890779.1 CDS MSMEG_6568 NC_008596.1 6621461 6622585 D identified by match to protein family HMM PF00196; LuxR family transcriptional regulator 6621461..6622585 Mycobacterium smegmatis str. MC2 155 4533944 YP_890780.1 CDS MSMEG_6567 NC_008596.1 6622524 6623729 R identified by match to protein family HMM PF04261; match to protein family HMM TIGR01409; match to protein family HMM TIGR01413; iron-dependent peroxidase complement(6622524..6623729) Mycobacterium smegmatis str. MC2 155 4533123 YP_890781.1 CDS MSMEG_6569 NC_008596.1 6623722 6624216 R identified by match to protein family HMM PF04314; hypothetical protein complement(6623722..6624216) Mycobacterium smegmatis str. MC2 155 4534023 YP_890782.1 CDS MSMEG_6570 NC_008596.1 6624209 6625588 R identified by match to protein family HMM PF03413; match to protein family HMM PF03929; integral membrane protein complement(6624209..6625588) Mycobacterium smegmatis str. MC2 155 4534612 YP_890783.1 CDS MSMEG_6571 NC_008596.1 6625702 6626244 R hypothetical protein complement(6625702..6626244) Mycobacterium smegmatis str. MC2 155 4533840 YP_890784.1 CDS MSMEG_6572 NC_008596.1 6626297 6626989 D methyltransferase 6626297..6626989 Mycobacterium smegmatis str. MC2 155 4536585 YP_890785.1 CDS MSMEG_6573 NC_008596.1 6626995 6628662 R identified by match to protein family HMM PF02720; hypothetical protein complement(6626995..6628662) Mycobacterium smegmatis str. MC2 155 4533315 YP_890786.1 CDS MSMEG_6574 NC_008596.1 6628925 6629410 D hypothetical protein 6628925..6629410 Mycobacterium smegmatis str. MC2 155 4531954 YP_890787.1 CDS MSMEG_6575 NC_008596.1 6629407 6630636 D identified by match to protein family HMM PF00144; beta-lactamase 6629407..6630636 Mycobacterium smegmatis str. MC2 155 4534493 YP_890788.1 CDS MSMEG_6576 NC_008596.1 6630646 6631086 R identified by match to protein family HMM PF01243; pyridoxamine 5'-phosphate oxidase complement(6630646..6631086) Mycobacterium smegmatis str. MC2 155 4534104 YP_890789.1 CDS MSMEG_6577 NC_008596.1 6631138 6632682 D identified by match to protein family HMM PF01039; methylmalonyl-CoA carboxyltransferase 12S subunit 6631138..6632682 Mycobacterium smegmatis str. MC2 155 4534965 YP_890790.1 CDS MSMEG_6578 NC_008596.1 6632857 6632961 D hypothetical protein 6632857..6632961 Mycobacterium smegmatis str. MC2 155 4535141 YP_890791.1 CDS MSMEG_6579 NC_008596.1 6633239 6633637 D hypothetical protein 6633239..6633637 Mycobacterium smegmatis str. MC2 155 4534607 YP_890792.1 CDS MSMEG_6580 NC_008596.1 6633752 6634201 D identified by match to protein family HMM PF01638; transcriptional regulator family protein 6633752..6634201 Mycobacterium smegmatis str. MC2 155 4532605 YP_890793.1 CDS MSMEG_6581 NC_008596.1 6634284 6634952 D identified by match to protein family HMM PF00106; short chain dehydrogenase 6634284..6634952 Mycobacterium smegmatis str. MC2 155 4535997 YP_890794.1 CDS MSMEG_6583 NC_008596.1 6635047 6636249 D identified by match to protein family HMM PF00756; antigen 85-C 6635047..6636249 Mycobacterium smegmatis str. MC2 155 4534527 YP_890795.1 CDS MSMEG_6582 NC_008596.1 6636246 6637394 R identified by match to protein family HMM PF00070; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase domain-containing protein complement(6636246..6637394) Mycobacterium smegmatis str. MC2 155 4532974 YP_890796.1 CDS MSMEG_6584 NC_008596.1 6637418 6638608 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase 6637418..6638608 Mycobacterium smegmatis str. MC2 155 4535721 YP_890797.1 CDS MSMEG_6585 NC_008596.1 6638601 6639872 D identified by match to protein family HMM PF00441; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 6638601..6639872 Mycobacterium smegmatis str. MC2 155 4535962 YP_890798.1 CDS MSMEG_6586 NC_008596.1 6639920 6640762 D identified by match to protein family HMM PF00561; alpha/beta hydrolase 6639920..6640762 Mycobacterium smegmatis str. MC2 155 4535474 YP_890799.1 CDS MSMEG_6588 NC_008596.1 6640759 6641664 D identified by match to protein family HMM PF01557; fumarylacetoacetate 6640759..6641664 Mycobacterium smegmatis str. MC2 155 4535821 YP_890800.1 CDS hrpA NC_008596.1 6641661 6645611 R identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717; match to protein family HMM TIGR01967; ATP-dependent helicase HrpA complement(6641661..6645611) Mycobacterium smegmatis str. MC2 155 4533566 YP_890801.1 CDS MSMEG_6589 NC_008596.1 6645663 6646724 R identified by similarity to GB:CAD18826.1; ISMsm5, transposase complement(6645663..6646724) Mycobacterium smegmatis str. MC2 155 4535636 YP_890802.1 CDS MSMEG_6590 NC_008596.1 6646800 6647195 D hypothetical protein 6646800..6647195 Mycobacterium smegmatis str. MC2 155 4534897 YP_890803.1 CDS MSMEG_6592 NC_008596.1 6647198 6648052 D identified by match to protein family HMM PF00106; short-chain dehydrogenase/reductase SDR 6647198..6648052 Mycobacterium smegmatis str. MC2 155 4535644 YP_890804.1 CDS MSMEG_6591 NC_008596.1 6648028 6649758 R identified by match to protein family HMM PF00266; class V aminotransferase complement(6648028..6649758) Mycobacterium smegmatis str. MC2 155 4533797 YP_890805.1 CDS MSMEG_6593 NC_008596.1 6649755 6650522 R identified by match to protein family HMM PF00005; ATP-binding protein complement(6649755..6650522) Mycobacterium smegmatis str. MC2 155 4532834 YP_890806.1 CDS MSMEG_6594 NC_008596.1 6650515 6651408 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease complement(6650515..6651408) Mycobacterium smegmatis str. MC2 155 4533404 YP_890807.1 CDS MSMEG_6595 NC_008596.1 6651395 6652369 R identified by match to protein family HMM PF00497; hypothetical protein complement(6651395..6652369) Mycobacterium smegmatis str. MC2 155 4537663 YP_890808.1 CDS MSMEG_6596 NC_008596.1 6652518 6653426 R hypothetical protein complement(6652518..6653426) Mycobacterium smegmatis str. MC2 155 4531873 YP_890809.1 CDS MSMEG_6597 NC_008596.1 6653552 6654313 D hydrolase of the alpha/beta superfamily protein 6653552..6654313 Mycobacterium smegmatis str. MC2 155 4536810 YP_890810.1 CDS MSMEG_6598 NC_008596.1 6654335 6654787 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; subunit beta of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; riboflavin synthase subunit beta 6654335..6654787 Mycobacterium smegmatis str. MC2 155 4537642 YP_890811.1 CDS MSMEG_6600 NC_008596.1 6656133 6657125 D identified by match to protein family HMM PF00665; transposase 6656133..6657125 Mycobacterium smegmatis str. MC2 155 4537546 YP_890812.1 CDS MSMEG_6601 NC_008596.1 6657133 6657654 R hypothetical protein complement(6657133..6657654) Mycobacterium smegmatis str. MC2 155 4531401 YP_890813.1 CDS MSMEG_6602 NC_008596.1 6657780 6658817 R identified by match to protein family HMM PF00296; oxidoreductase complement(6657780..6658817) Mycobacterium smegmatis str. MC2 155 4531354 YP_890814.1 CDS MSMEG_6603 NC_008596.1 6658820 6659215 R NADH:flavin oxidoreductase complement(6658820..6659215) Mycobacterium smegmatis str. MC2 155 4533716 YP_890815.1 CDS MSMEG_6605 NC_008596.1 6659358 6659954 D identified by match to protein family HMM PF03551; transcriptional regulatory protein 6659358..6659954 Mycobacterium smegmatis str. MC2 155 4536283 YP_890816.1 CDS MSMEG_6604 NC_008596.1 6659918 6660517 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(6659918..6660517) Mycobacterium smegmatis str. MC2 155 4537398 YP_890817.1 CDS MSMEG_6606 NC_008596.1 6660569 6661243 R hypothetical protein complement(6660569..6661243) Mycobacterium smegmatis str. MC2 155 4534783 YP_890818.1 CDS MSMEG_6607 NC_008596.1 6661240 6662100 R hypothetical protein complement(6661240..6662100) Mycobacterium smegmatis str. MC2 155 4535193 YP_890819.1 CDS MSMEG_6608 NC_008596.1 6662097 6663047 R hypothetical protein complement(6662097..6663047) Mycobacterium smegmatis str. MC2 155 4535947 YP_890820.1 CDS MSMEG_6611 NC_008596.1 6663002 6663529 D hypothetical protein 6663002..6663529 Mycobacterium smegmatis str. MC2 155 4535180 YP_890821.1 CDS MSMEG_6609 NC_008596.1 6663038 6663502 R hypothetical protein complement(6663038..6663502) Mycobacterium smegmatis str. MC2 155 4531640 YP_890822.1 CDS MSMEG_6610 NC_008596.1 6663492 6664352 R hypothetical protein complement(6663492..6664352) Mycobacterium smegmatis str. MC2 155 4533736 YP_890823.1 CDS moxR NC_008596.1 6664363 6665364 R identified by match to protein family HMM PF07726; match to protein family HMM PF07728; ATPase, MoxR family protein complement(6664363..6665364) Mycobacterium smegmatis str. MC2 155 4532512 YP_890824.1 CDS MSMEG_6613 NC_008596.1 6665394 6666287 R hypothetical protein complement(6665394..6666287) Mycobacterium smegmatis str. MC2 155 4534446 YP_890825.1 CDS MSMEG_6614 NC_008596.1 6666377 6667543 R identified by match to protein family HMM PF00149; match to protein family HMM TIGR01409; integral membrane protein complement(6666377..6667543) Mycobacterium smegmatis str. MC2 155 4536896 YP_890826.1 CDS MSMEG_6615 NC_008596.1 6667571 6668242 R hypothetical protein complement(6667571..6668242) Mycobacterium smegmatis str. MC2 155 4532564 YP_890827.1 CDS MSMEG_6616 NC_008596.1 6668245 6669426 R identified by match to protein family HMM PF00107; S-(hydroxymethyl)glutathione dehydrogenase complement(6668245..6669426) Mycobacterium smegmatis str. MC2 155 4536457 YP_890828.1 CDS MSMEG_6617 NC_008596.1 6672072 6672791 R identified by match to protein family HMM PF00293; nudix hydrolase complement(6672072..6672791) Mycobacterium smegmatis str. MC2 155 4532731 YP_890829.1 CDS MSMEG_6620 NC_008596.1 6674114 6674437 R hypothetical protein complement(6674114..6674437) Mycobacterium smegmatis str. MC2 155 4531896 YP_890830.1 CDS MSMEG_6621 NC_008596.1 6674557 6675408 R identified by match to protein family HMM PF00296; luciferase complement(6674557..6675408) Mycobacterium smegmatis str. MC2 155 4532007 YP_890831.1 CDS MSMEG_6622 NC_008596.1 6675471 6676661 D identified by match to protein family HMM PF00067; cytochrome P450 monooxygenase 6675471..6676661 Mycobacterium smegmatis str. MC2 155 4537215 YP_890832.1 CDS MSMEG_6623 NC_008596.1 6676667 6677446 R identified by match to protein family HMM PF00106; dehydrogenase complement(6676667..6677446) Mycobacterium smegmatis str. MC2 155 4535460 YP_890833.1 CDS MSMEG_6624 NC_008596.1 6677450 6678007 R hypothetical protein complement(6677450..6678007) Mycobacterium smegmatis str. MC2 155 4536103 YP_890834.1 CDS MSMEG_6625 NC_008596.1 6678040 6678462 R identified by match to protein family HMM PF00903; glyoxalase complement(6678040..6678462) Mycobacterium smegmatis str. MC2 155 4534144 YP_890835.1 CDS MSMEG_6626 NC_008596.1 6678469 6679242 R identified by match to protein family HMM PF00106; short-chain dehydrogenase/reductase SDR complement(6678469..6679242) Mycobacterium smegmatis str. MC2 155 4532606 YP_890836.1 CDS MSMEG_6627 NC_008596.1 6679388 6680059 D identified by match to protein family HMM PF00881; nitroreductase 6679388..6680059 Mycobacterium smegmatis str. MC2 155 4533090 YP_890837.1 CDS MSMEG_6628 NC_008596.1 6680121 6680732 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 6680121..6680732 Mycobacterium smegmatis str. MC2 155 4536617 YP_890838.1 CDS MSMEG_6630 NC_008596.1 6680779 6681129 D identified by match to protein family HMM PF00903; glyoxalase 6680779..6681129 Mycobacterium smegmatis str. MC2 155 4536880 YP_890839.1 CDS mdcH NC_008596.1 6681119 6682018 R identified by match to protein family HMM PF00698; match to protein family HMM TIGR03131; malonate decarboxylase subunit epsilon complement(6681119..6682018) Mycobacterium smegmatis str. MC2 155 4532528 YP_890840.1 CDS mdcG NC_008596.1 6682015 6682620 R Catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein; phosphoribosyl-dephospho-CoA transferase complement(6682015..6682620) Mycobacterium smegmatis str. MC2 155 4537423 YP_890841.1 CDS MSMEG_6632 NC_008596.1 6682617 6684233 R identified by match to protein family HMM PF01039; match to protein family HMM PF06833; match to protein family HMM TIGR03133; match to protein family HMM TIGR03134; subunit beta of malonate decarboxylase complement(6682617..6684233) Mycobacterium smegmatis str. MC2 155 4534062 YP_890842.1 CDS mdcC NC_008596.1 6684230 6684538 R identified by match to protein family HMM PF06857; match to protein family HMM TIGR03130; malonate decarboxylase ACP complement(6684230..6684538) Mycobacterium smegmatis str. MC2 155 4535653 YP_890843.1 CDS mdcB NC_008596.1 6684526 6685389 R identified by match to protein family HMM PF01874; match to protein family HMM TIGR03132; triphosphoribosyl-dephospho-CoA synthase complement(6684526..6685389) Mycobacterium smegmatis str. MC2 155 4533512 YP_890844.1 CDS MSMEG_6635 NC_008596.1 6685394 6686005 R malonate decarboxylase subunit alpha complement(6685394..6686005) Mycobacterium smegmatis str. MC2 155 4532682 YP_890845.1 CDS MSMEG_6636 NC_008596.1 6686470 6687090 R identified by match to protein family HMM PF00081; match to protein family HMM PF02777; [Mn] superoxide dismutase complement(6686470..6687090) Mycobacterium smegmatis str. MC2 155 4532672 YP_890846.1 CDS MSMEG_6637 NC_008596.1 6687242 6687499 D hypothetical protein 6687242..6687499 Mycobacterium smegmatis str. MC2 155 4533175 YP_890847.1 CDS metE NC_008596.1 6687551 6689866 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(6687551..6689866) Mycobacterium smegmatis str. MC2 155 4533405 YP_890848.1 CDS MSMEG_6639 NC_008596.1 6690221 6690898 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator complement(6690221..6690898) Mycobacterium smegmatis str. MC2 155 4537365 YP_890849.1 CDS MSMEG_6640 NC_008596.1 6690946 6691068 R hypothetical protein complement(6690946..6691068) Mycobacterium smegmatis str. MC2 155 4537685 YP_890850.1 CDS MSMEG_6641 NC_008596.1 6690967 6692328 D nitrilotriacetate monooxygenase component A 6690967..6692328 Mycobacterium smegmatis str. MC2 155 4537010 YP_890851.1 CDS MSMEG_6642 NC_008596.1 6692329 6693528 D identified by match to protein family HMM PF02515; caib/baif family protein 6692329..6693528 Mycobacterium smegmatis str. MC2 155 4534916 YP_890852.1 CDS MSMEG_6644 NC_008596.1 6693546 6694457 D identified by match to protein family HMM PF03328; malyl-CoA lyase 6693546..6694457 Mycobacterium smegmatis str. MC2 155 4533515 YP_890853.1 CDS MSMEG_6643 NC_008596.1 6694441 6695859 R identified by match to protein family HMM PF01381; match to protein family HMM PF06114; DNA-binding protein complement(6694441..6695859) Mycobacterium smegmatis str. MC2 155 4531757 YP_890854.1 CDS MSMEG_6645 NC_008596.1 6695968 6697482 D identified by match to protein family HMM PF03972; 2-methylcitrate dehydratase 6695968..6697482 Mycobacterium smegmatis str. MC2 155 4531803 YP_890855.1 CDS prpB NC_008596.1 6697479 6698396 D identified by similarity to SP:Q8NSL2; match to protein family HMM TIGR02317; methylisocitrate lyase 6697479..6698396 Mycobacterium smegmatis str. MC2 155 4533176 YP_890856.1 CDS MSMEG_6647 NC_008596.1 6698393 6699523 D catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; citrate synthase 6698393..6699523 Mycobacterium smegmatis str. MC2 155 4536393 YP_890857.1 CDS pyc NC_008596.1 6699516 6702911 D biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 6699516..6702911 Mycobacterium smegmatis str. MC2 155 4534510 YP_890858.1 CDS MSMEG_6649 NC_008596.1 6702915 6703805 R hypothetical protein complement(6702915..6703805) Mycobacterium smegmatis str. MC2 155 4537543 YP_890859.1 CDS MSMEG_6650 NC_008596.1 6704173 6704352 D hypothetical protein 6704173..6704352 Mycobacterium smegmatis str. MC2 155 4535769 YP_890860.1 CDS MSMEG_6651 NC_008596.1 6704571 6704684 R hypothetical protein complement(6704571..6704684) Mycobacterium smegmatis str. MC2 155 4535182 YP_890861.1 CDS MSMEG_6652 NC_008596.1 6704714 6705124 R hypothetical protein complement(6704714..6705124) Mycobacterium smegmatis str. MC2 155 4535162 YP_890862.1 CDS MSMEG_6654 NC_008596.1 6708371 6709774 D identified by match to protein family HMM PF01609; TnpC protein 6708371..6709774 Mycobacterium smegmatis str. MC2 155 4533787 YP_890863.1 CDS MSMEG_6655 NC_008596.1 6709869 6710645 R hypothetical protein complement(6709869..6710645) Mycobacterium smegmatis str. MC2 155 4532628 YP_890864.1 CDS MSMEG_6656 NC_008596.1 6710711 6712219 R identified by match to protein family HMM PF02899; hypothetical protein complement(6710711..6712219) Mycobacterium smegmatis str. MC2 155 4531084 YP_890865.1 CDS MSMEG_6657 NC_008596.1 6712209 6713342 R subunit alpha of malonate decarboxylase complement(6712209..6713342) Mycobacterium smegmatis str. MC2 155 4534390 YP_890866.1 CDS MSMEG_6658 NC_008596.1 6713339 6714169 R identified by match to protein family HMM PF00561; alpha/beta hydrolase complement(6713339..6714169) Mycobacterium smegmatis str. MC2 155 4535681 YP_890867.1 CDS MSMEG_6660 NC_008596.1 6714430 6715866 D identified by match to protein family HMM PF02133; permease, cytosine/purines, uracil, thiamine, allantoin family protein 6714430..6715866 Mycobacterium smegmatis str. MC2 155 4535719 YP_890868.1 CDS MSMEG_6659 NC_008596.1 6715856 6716116 R hypothetical protein complement(6715856..6716116) Mycobacterium smegmatis str. MC2 155 4533798 YP_890869.1 CDS MSMEG_6661 NC_008596.1 6716067 6716909 D identified by match to protein family HMM PF02409; O-methyltransferase 6716067..6716909 Mycobacterium smegmatis str. MC2 155 4535834 YP_890870.1 CDS MSMEG_6662 NC_008596.1 6716996 6717841 D identified by match to protein family HMM PF00106; short chain dehydrogenase 6716996..6717841 Mycobacterium smegmatis str. MC2 155 4531849 YP_890871.1 CDS MSMEG_6663 NC_008596.1 6717845 6718588 R C5-O-methyltransferase complement(6717845..6718588) Mycobacterium smegmatis str. MC2 155 4535701 YP_890872.1 CDS MSMEG_6664 NC_008596.1 6718615 6719460 R identified by match to protein family HMM PF02219; methylenetetrahydrofolate reductase complement(6718615..6719460) Mycobacterium smegmatis str. MC2 155 4534645 YP_890873.1 CDS MSMEG_6665 NC_008596.1 6719637 6719912 R integral membrane protein complement(6719637..6719912) Mycobacterium smegmatis str. MC2 155 4533186 YP_890874.1 CDS MSMEG_6666 NC_008596.1 6719967 6720425 R hypothetical protein complement(6719967..6720425) Mycobacterium smegmatis str. MC2 155 4530843 YP_890875.1 CDS MSMEG_6667 NC_008596.1 6720444 6720974 R hypothetical protein complement(6720444..6720974) Mycobacterium smegmatis str. MC2 155 4536890 YP_890876.1 CDS MSMEG_6668 NC_008596.1 6721204 6722343 D ABC transporter periplasmic protein 6721204..6722343 Mycobacterium smegmatis str. MC2 155 4532778 YP_890877.1 CDS MSMEG_6669 NC_008596.1 6722340 6723293 D identified by match to protein family HMM PF00528; ABC transporter permease 6722340..6723293 Mycobacterium smegmatis str. MC2 155 4535274 YP_890878.1 CDS MSMEG_6670 NC_008596.1 6723290 6724114 D identified by match to protein family HMM PF00528; ABC transporter permease 6723290..6724114 Mycobacterium smegmatis str. MC2 155 4531078 YP_890879.1 CDS MSMEG_6671 NC_008596.1 6724124 6725167 D identified by match to protein family HMM PF00005; match to protein family HMM PF03459; sulfate/thiosulfate import ATP-binding protein CysA 6724124..6725167 Mycobacterium smegmatis str. MC2 155 4531223 YP_890880.1 CDS MSMEG_6672 NC_008596.1 6725164 6726183 D identified by match to protein family HMM PF01663; type I phosphodiesterase / nucleotide pyrophosphatase superfamily protein 6725164..6726183 Mycobacterium smegmatis str. MC2 155 4535588 YP_890881.1 CDS MSMEG_6673 NC_008596.1 6726242 6727711 D identified by match to protein family HMM PF01425; 6-aminohexanoate-cyclic-dimer hydrolase 6726242..6727711 Mycobacterium smegmatis str. MC2 155 4535447 YP_890882.1 CDS MSMEG_6674 NC_008596.1 6727730 6728623 R identified by similarity to SP:P18561; match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(6727730..6728623) Mycobacterium smegmatis str. MC2 155 4533206 YP_890883.1 CDS MSMEG_6675 NC_008596.1 6728634 6728810 R hypothetical protein complement(6728634..6728810) Mycobacterium smegmatis str. MC2 155 4535935 YP_890884.1 CDS MSMEG_6676 NC_008596.1 6728933 6729547 D transmembrane protein 6728933..6729547 Mycobacterium smegmatis str. MC2 155 4532431 YP_890885.1 CDS MSMEG_6678 NC_008596.1 6729674 6730159 D hypothetical protein 6729674..6730159 Mycobacterium smegmatis str. MC2 155 4532389 YP_890886.1 CDS MSMEG_6677 NC_008596.1 6730109 6730969 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(6730109..6730969) Mycobacterium smegmatis str. MC2 155 4534159 YP_890887.1 CDS MSMEG_6679 NC_008596.1 6731106 6732014 D identified by match to protein family HMM PF00753; metallo-beta-lactamase 6731106..6732014 Mycobacterium smegmatis str. MC2 155 4532226 YP_890888.1 CDS MSMEG_6680 NC_008596.1 6732021 6732491 R identified by match to protein family HMM PF04224; integral membrane protein complement(6732021..6732491) Mycobacterium smegmatis str. MC2 155 4536505 YP_890889.1 CDS MSMEG_6681 NC_008596.1 6732488 6732724 R hypothetical protein complement(6732488..6732724) Mycobacterium smegmatis str. MC2 155 4531532 YP_890890.1 CDS MSMEG_6682 NC_008596.1 6732721 6733344 R identified by match to protein family HMM TIGR02937; RNA polymerase sigma-70 factor complement(6732721..6733344) Mycobacterium smegmatis str. MC2 155 4537280 YP_890891.1 CDS MSMEG_6683 NC_008596.1 6733486 6733965 D identified by match to protein family HMM PF00578; peroxiredoxin 6733486..6733965 Mycobacterium smegmatis str. MC2 155 4532979 YP_890892.1 CDS MSMEG_6684 NC_008596.1 6733962 6735056 D agarase 6733962..6735056 Mycobacterium smegmatis str. MC2 155 4537444 YP_890893.1 CDS gabT NC_008596.1 6735247 6736599 D identified by match to protein family HMM PF00202; match to protein family HMM TIGR00700; 4-aminobutyrate aminotransferase 6735247..6736599 Mycobacterium smegmatis str. MC2 155 4536223 YP_890894.1 CDS MSMEG_6686 NC_008596.1 6736619 6737812 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; glutaryl-CoA dehydrogenase 6736619..6737812 Mycobacterium smegmatis str. MC2 155 4533635 YP_890895.1 CDS MSMEG_6687 NC_008596.1 6737809 6739272 D identified by match to protein family HMM PF00171; aldehyde dehydrogenase 6737809..6739272 Mycobacterium smegmatis str. MC2 155 4536066 YP_890896.1 CDS MSMEG_6689 NC_008596.1 6739269 6740372 D identified by match to protein family HMM PF02515; CAIB/BAIF family protein 6739269..6740372 Mycobacterium smegmatis str. MC2 155 4533624 YP_890897.1 CDS MSMEG_6688 NC_008596.1 6740365 6741876 R identified by match to protein family HMM PF07905; regulatory protein complement(6740365..6741876) Mycobacterium smegmatis str. MC2 155 4537063 YP_890898.1 CDS MSMEG_6690 NC_008596.1 6741873 6742682 R identified by match to protein family HMM PF00117; match to protein family HMM PF07722; glutamine amidotransferase complement(6741873..6742682) Mycobacterium smegmatis str. MC2 155 4535502 YP_890899.1 CDS MSMEG_6691 NC_008596.1 6742679 6743425 R identified by match to protein family HMM PF00117; match to protein family HMM PF07722; glutamine amidotransferase complement(6742679..6743425) Mycobacterium smegmatis str. MC2 155 4534318 YP_890900.1 CDS MSMEG_6692 NC_008596.1 6743389 6744108 R identified by match to protein family HMM PF00497; glutamine-binding periplasmic protein complement(6743389..6744108) Mycobacterium smegmatis str. MC2 155 4537084 YP_890901.1 CDS MSMEG_6693 NC_008596.1 6744105 6745490 R identified by match to protein family HMM PF00120; glutamine synthetase complement(6744105..6745490) Mycobacterium smegmatis str. MC2 155 4531066 YP_890902.1 CDS MSMEG_6694 NC_008596.1 6745496 6745684 R hypothetical protein complement(6745496..6745684) Mycobacterium smegmatis str. MC2 155 4531505 YP_890903.1 CDS MSMEG_6695 NC_008596.1 6745730 6746932 R identified by match to protein family HMM PF00067; cytochrome P450 complement(6745730..6746932) Mycobacterium smegmatis str. MC2 155 4535911 YP_890904.1 CDS MSMEG_6696 NC_008596.1 6747083 6747487 R hypothetical protein complement(6747083..6747487) Mycobacterium smegmatis str. MC2 155 4533444 YP_890905.1 CDS MSMEG_6697 NC_008596.1 6747206 6748528 D identified by similarity to GP:150005; match to protein family HMM PF01610; IS1096, tnpA protein 6747206..6748528 Mycobacterium smegmatis str. MC2 155 4536157 YP_890906.1 CDS MSMEG_6698 NC_008596.1 6748536 6749162 R identified by similarity to GP:150004; match to protein family HMM PF07929; IS1096, tnpR protein complement(6748536..6749162) Mycobacterium smegmatis str. MC2 155 4534492 YP_890907.1 CDS MSMEG_6699 NC_008596.1 6749195 6750064 R hypothetical protein complement(6749195..6750064) Mycobacterium smegmatis str. MC2 155 4534304 YP_890908.1 CDS MSMEG_6700 NC_008596.1 6750061 6750798 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; regulatory protein complement(6750061..6750798) Mycobacterium smegmatis str. MC2 155 4536606 YP_890909.1 CDS MSMEG_6701 NC_008596.1 6750984 6752480 D identified by match to protein family HMM PF00324; amino acid permease 6750984..6752480 Mycobacterium smegmatis str. MC2 155 4534405 YP_890910.1 CDS MSMEG_6702 NC_008596.1 6752526 6753908 D identified by match to protein family HMM PF00171; [NADP+] succinate-semialdehyde dehydrogenase 6752526..6753908 Mycobacterium smegmatis str. MC2 155 4531418 YP_890911.1 CDS MSMEG_6703 NC_008596.1 6753954 6754784 D N5,N10- methylenetetrahydromethanopterin reductase-related protein 6753954..6754784 Mycobacterium smegmatis str. MC2 155 4532960 YP_890912.1 CDS MSMEG_6705 NC_008596.1 6754873 6755619 D identified by match to protein family HMM PF01614; regulatory protein 6754873..6755619 Mycobacterium smegmatis str. MC2 155 4534216 YP_890913.1 CDS MSMEG_6704 NC_008596.1 6755616 6756428 R identified by match to protein family HMM PF01488; shikimate 5-dehydrogenase complement(6755616..6756428) Mycobacterium smegmatis str. MC2 155 4531218 YP_890914.1 CDS MSMEG_6707 NC_008596.1 6756213 6756533 D hypothetical protein 6756213..6756533 Mycobacterium smegmatis str. MC2 155 4536147 YP_890915.1 CDS MSMEG_6706 NC_008596.1 6756453 6756557 R hypothetical protein complement(6756453..6756557) Mycobacterium smegmatis str. MC2 155 4536072 YP_890916.1 CDS MSMEG_6708 NC_008596.1 6756549 6757454 D identified by match to protein family HMM PF00561; epoxide hydrolase 6756549..6757454 Mycobacterium smegmatis str. MC2 155 4532392 YP_890917.1 CDS MSMEG_6709 NC_008596.1 6757445 6758197 D identified by match to protein family HMM PF00106; cyclopentanol dehydrogenase 6757445..6758197 Mycobacterium smegmatis str. MC2 155 4535720 YP_890918.1 CDS MSMEG_6710 NC_008596.1 6758217 6759065 D identified by match to protein family HMM PF00561; alpha/beta hydrolase 6758217..6759065 Mycobacterium smegmatis str. MC2 155 4533237 YP_890919.1 CDS MSMEG_6711 NC_008596.1 6759120 6760487 R identified by match to protein family HMM PF00083; match to protein family HMM PF06779; match to protein family HMM PF07690; 4-hydroxybenzoate transporter complement(6759120..6760487) Mycobacterium smegmatis str. MC2 155 4533209 YP_890920.1 CDS MSMEG_6712 NC_008596.1 6760497 6761582 R identified by match to protein family HMM PF00465; maleylacetate reductase complement(6760497..6761582) Mycobacterium smegmatis str. MC2 155 4531720 YP_890921.1 CDS MSMEG_6713 NC_008596.1 6761579 6762454 R identified by match to protein family HMM PF00775; match to protein family HMM PF04444; hydroxyquinol 1,2-dioxygenase complement(6761579..6762454) Mycobacterium smegmatis str. MC2 155 4531224 YP_890922.1 CDS MSMEG_6714 NC_008596.1 6762451 6763068 R hypothetical protein complement(6762451..6763068) Mycobacterium smegmatis str. MC2 155 4535900 YP_890923.1 CDS MSMEG_6715 NC_008596.1 6763271 6764110 D identified by match to protein family HMM PF01261; AP endonuclease, family protein 2 6763271..6764110 Mycobacterium smegmatis str. MC2 155 4531512 YP_890924.1 CDS MSMEG_6716 NC_008596.1 6764137 6764958 D identified by match to protein family HMM PF01261; AP endonuclease, family protein 2 6764137..6764958 Mycobacterium smegmatis str. MC2 155 4536943 YP_890925.1 CDS MSMEG_6717 NC_008596.1 6764976 6766046 D identified by match to protein family HMM PF01408; match to protein family HMM PF02894; oxidoreductase, Gfo/Idh/MocA family protein 6764976..6766046 Mycobacterium smegmatis str. MC2 155 4532946 YP_890926.1 CDS MSMEG_6718 NC_008596.1 6766137 6767504 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; transporter major facilitator family protein 6766137..6767504 Mycobacterium smegmatis str. MC2 155 4536925 YP_890927.1 CDS MSMEG_6719 NC_008596.1 6767501 6768358 D identified by match to protein family HMM PF00561; epoxide hydrolase 6767501..6768358 Mycobacterium smegmatis str. MC2 155 4531884 YP_890928.1 CDS MSMEG_6720 NC_008596.1 6768359 6769222 R identified by match to protein family HMM PF00561; epoxide hydrolase complement(6768359..6769222) Mycobacterium smegmatis str. MC2 155 4531562 YP_890929.1 CDS MSMEG_6721 NC_008596.1 6769236 6769355 R hypothetical protein complement(6769236..6769355) Mycobacterium smegmatis str. MC2 155 4531519 YP_890930.1 CDS MSMEG_6722 NC_008596.1 6769511 6770410 D hypothetical protein 6769511..6770410 Mycobacterium smegmatis str. MC2 155 4533016 YP_890931.1 CDS MSMEG_6723 NC_008596.1 6770504 6771022 R hypothetical protein complement(6770504..6771022) Mycobacterium smegmatis str. MC2 155 4536067 YP_890932.1 CDS MSMEG_6724 NC_008596.1 6771009 6771791 R identified by match to protein family HMM PF02361; cobalt ABC transporter complement(6771009..6771791) Mycobacterium smegmatis str. MC2 155 4534712 YP_890933.1 CDS MSMEG_6725 NC_008596.1 6771788 6773263 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(6771788..6773263) Mycobacterium smegmatis str. MC2 155 4532293 YP_890934.1 CDS MSMEG_6726 NC_008596.1 6773260 6773889 R ABC transporter permease complement(6773260..6773889) Mycobacterium smegmatis str. MC2 155 4532458 YP_890935.1 CDS MSMEG_6727 NC_008596.1 6774109 6775455 D identified by match to protein family HMM PF00324; amino acid permease 6774109..6775455 Mycobacterium smegmatis str. MC2 155 4533822 YP_890936.1 CDS MSMEG_6728 NC_008596.1 6775459 6775947 D hypothetical protein 6775459..6775947 Mycobacterium smegmatis str. MC2 155 4536912 YP_890937.1 CDS MSMEG_6730 NC_008596.1 6776043 6776948 D identified by match to protein family HMM PF00248; oxidoreductase YdbC 6776043..6776948 Mycobacterium smegmatis str. MC2 155 4533825 YP_890938.1 CDS MSMEG_6729 NC_008596.1 6776891 6777760 R DNA-binding protein complement(6776891..6777760) Mycobacterium smegmatis str. MC2 155 4537606 YP_890939.1 CDS MSMEG_6731 NC_008596.1 6777839 6778417 D identified by match to protein family HMM PF00440; transcriptional regulatory protein 6777839..6778417 Mycobacterium smegmatis str. MC2 155 4535106 YP_890940.1 CDS MSMEG_6732 NC_008596.1 6778536 6779126 D integral membrane protein 6778536..6779126 Mycobacterium smegmatis str. MC2 155 4534909 YP_890941.1 CDS MSMEG_6733 NC_008596.1 6779127 6779912 R identified by match to protein family HMM PF00795; carbon-nitrogen hydrolase complement(6779127..6779912) Mycobacterium smegmatis str. MC2 155 4531353 YP_890942.1 CDS MSMEG_6734 NC_008596.1 6779938 6781251 R dibenzothiophene desulfurization enzyme A complement(6779938..6781251) Mycobacterium smegmatis str. MC2 155 4537260 YP_890943.1 CDS MSMEG_6735 NC_008596.1 6781284 6782720 R identified by match to protein family HMM PF00324; amino acid permease complement(6781284..6782720) Mycobacterium smegmatis str. MC2 155 4533103 YP_890944.1 CDS MSMEG_6736 NC_008596.1 6782849 6783850 R identified by match to protein family HMM PF00356; LacI family transcriptional regulator complement(6782849..6783850) Mycobacterium smegmatis str. MC2 155 4537078 YP_890945.1 CDS MSMEG_6737 NC_008596.1 6784100 6785038 D hypothetical protein 6784100..6785038 Mycobacterium smegmatis str. MC2 155 4536369 YP_890946.1 CDS MSMEG_6738 NC_008596.1 6785045 6785728 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; transcriptional regulator YdhC complement(6785045..6785728) Mycobacterium smegmatis str. MC2 155 4536875 YP_890947.1 CDS MSMEG_6739 NC_008596.1 6785888 6786334 D hypothetical protein 6785888..6786334 Mycobacterium smegmatis str. MC2 155 4536936 YP_890948.1 CDS MSMEG_6740 NC_008596.1 6786544 6787548 D catalyzes conversion of 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketobutyrate; 1-aminocyclopropane-1-carboxylate deaminase 6786544..6787548 Mycobacterium smegmatis str. MC2 155 4535991 YP_890949.1 CDS MSMEG_6741 NC_008596.1 6787549 6788229 R identified by match to protein family HMM PF03861; ANTAR domain-containing protein complement(6787549..6788229) Mycobacterium smegmatis str. MC2 155 4531766 YP_890950.1 CDS MSMEG_6742 NC_008596.1 6788255 6788818 R identified by match to protein family HMM PF07336; hypothetical protein complement(6788255..6788818) Mycobacterium smegmatis str. MC2 155 4533755 YP_890951.1 CDS MSMEG_6743 NC_008596.1 6788941 6789396 D identified by match to protein family HMM PF00903; lactoylglutathione lyase 6788941..6789396 Mycobacterium smegmatis str. MC2 155 4534837 YP_890952.1 CDS MSMEG_6744 NC_008596.1 6789407 6790261 D identified by match to protein family HMM PF01243; oxidoreductase FAD/NAD 6789407..6790261 Mycobacterium smegmatis str. MC2 155 4534821 YP_890953.1 CDS MSMEG_6745 NC_008596.1 6790305 6791048 D identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 6790305..6791048 Mycobacterium smegmatis str. MC2 155 4532841 YP_890954.1 CDS MSMEG_6746 NC_008596.1 6791052 6792122 R identified by match to protein family HMM PF00248; oxidoreductase, aldo/keto reductase complement(6791052..6792122) Mycobacterium smegmatis str. MC2 155 4531297 YP_890955.1 CDS MSMEG_6747 NC_008596.1 6792281 6793198 D identified by match to protein family HMM PF00107; oxidoreductase 6792281..6793198 Mycobacterium smegmatis str. MC2 155 4531228 YP_890956.1 CDS MSMEG_6748 NC_008596.1 6793199 6794875 R identified by match to protein family HMM PF00005; ABC transporter ATPase complement(6793199..6794875) Mycobacterium smegmatis str. MC2 155 4531042 YP_890957.1 CDS MSMEG_6749 NC_008596.1 6794909 6795121 R hypothetical protein complement(6794909..6795121) Mycobacterium smegmatis str. MC2 155 4531137 YP_890958.1 CDS MSMEG_6750 NC_008596.1 6795153 6795962 R hypothetical protein complement(6795153..6795962) Mycobacterium smegmatis str. MC2 155 4536435 YP_890959.1 CDS MSMEG_6751 NC_008596.1 6796078 6796293 D hypothetical protein 6796078..6796293 Mycobacterium smegmatis str. MC2 155 4532931 YP_890960.1 CDS MSMEG_6752 NC_008596.1 6796297 6797238 R identified by match to protein family HMM PF01341; endoglucanase A complement(6796297..6797238) Mycobacterium smegmatis str. MC2 155 4534860 YP_890961.1 CDS MSMEG_6753 NC_008596.1 6797368 6798090 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF07993; oxidoreductase, short chain dehydrogenase/reductase 6797368..6798090 Mycobacterium smegmatis str. MC2 155 4536451 YP_890962.1 CDS MSMEG_6754 NC_008596.1 6798433 6799461 D identified by match to protein family HMM PF01575; MaoC like domain-containing protein 6798433..6799461 Mycobacterium smegmatis str. MC2 155 4536412 YP_890963.1 CDS MSMEG_6755 NC_008596.1 6799518 6800441 D identified by match to protein family HMM PF05368; isoflavone reductase 6799518..6800441 Mycobacterium smegmatis str. MC2 155 4531734 YP_890964.1 CDS glpK NC_008596.1 6800466 6801983 R identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311; glycerol kinase complement(6800466..6801983) Mycobacterium smegmatis str. MC2 155 4532031 YP_890965.1 CDS MSMEG_6757 NC_008596.1 6801980 6802741 R identified by match to protein family HMM PF01614; glycerol operon regulatory protein complement(6801980..6802741) Mycobacterium smegmatis str. MC2 155 4533827 YP_890966.1 CDS MSMEG_6758 NC_008596.1 6802924 6803739 D identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; transport integral membrane protein 6802924..6803739 Mycobacterium smegmatis str. MC2 155 4531892 YP_890967.1 CDS glpK NC_008596.1 6803763 6805280 D Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 6803763..6805280 Mycobacterium smegmatis str. MC2 155 4535575 YP_890968.1 CDS MSMEG_6761 NC_008596.1 6805277 6806983 D identified by match to protein family HMM PF01266; match to protein family HMM PF01494; glycerol-3-phosphate dehydrogenase 6805277..6806983 Mycobacterium smegmatis str. MC2 155 4533585 YP_890969.1 CDS MSMEG_6760 NC_008596.1 6806973 6807458 R hypothetical protein complement(6806973..6807458) Mycobacterium smegmatis str. MC2 155 4532637 YP_890970.1 CDS MSMEG_6762 NC_008596.1 6807460 6807807 R identified by match to protein family HMM PF01022; transcriptional regulator complement(6807460..6807807) Mycobacterium smegmatis str. MC2 155 4532009 YP_890971.1 CDS MSMEG_6763 NC_008596.1 6807853 6808677 R identified by match to protein family HMM PF00561; oxidoreductase complement(6807853..6808677) Mycobacterium smegmatis str. MC2 155 4532671 YP_890972.1 CDS MSMEG_6764 NC_008596.1 6808750 6809331 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 6808750..6809331 Mycobacterium smegmatis str. MC2 155 4534523 YP_890973.1 CDS MSMEG_6765 NC_008596.1 6809341 6810183 R identified by match to protein family HMM PF01061; ABC transporter complement(6809341..6810183) Mycobacterium smegmatis str. MC2 155 4535280 YP_890974.1 CDS MSMEG_6766 NC_008596.1 6810183 6811019 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(6810183..6811019) Mycobacterium smegmatis str. MC2 155 4534819 YP_890975.1 CDS MSMEG_6767 NC_008596.1 6811016 6816496 R identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801; mycocerosic acid synthase complement(6811016..6816496) Mycobacterium smegmatis str. MC2 155 4533945 YP_890976.1 CDS MSMEG_6768 NC_008596.1 6816577 6818328 R identified by match to protein family HMM PF01266; match to protein family HMM PF04820; halogenase complement(6816577..6818328) Mycobacterium smegmatis str. MC2 155 4533715 YP_890977.1 CDS MSMEG_6769 NC_008596.1 6818359 6819639 R identified by match to protein family HMM PF00999; transporter monovalent cation:proton antiporter-2 (CPA2) family protein complement(6818359..6819639) Mycobacterium smegmatis str. MC2 155 4536403 YP_890978.1 CDS MSMEG_6770 NC_008596.1 6819891 6820289 D hypothetical protein 6819891..6820289 Mycobacterium smegmatis str. MC2 155 4534610 YP_890979.1 CDS MSMEG_6771 NC_008596.1 6820316 6820858 D hypothetical protein 6820316..6820858 Mycobacterium smegmatis str. MC2 155 4533389 YP_890980.1 CDS MSMEG_6772 NC_008596.1 6820932 6821960 D identified by match to protein family HMM PF00561; hypothetical protein 6820932..6821960 Mycobacterium smegmatis str. MC2 155 4537167 YP_890981.1 CDS MSMEG_6773 NC_008596.1 6822091 6823278 D identified by match to protein family HMM PF02515; CaiB/BaiF family protein 6822091..6823278 Mycobacterium smegmatis str. MC2 155 4534478 YP_890982.1 CDS MSMEG_6774 NC_008596.1 6823288 6824070 D identified by match to protein family HMM PF00378; enoyl-CoA hydratase 6823288..6824070 Mycobacterium smegmatis str. MC2 155 4531944 YP_890983.1 CDS MSMEG_6775 NC_008596.1 6824092 6825447 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator superfamily protein transporter 6824092..6825447 Mycobacterium smegmatis str. MC2 155 4536008 YP_890984.1 CDS MSMEG_6776 NC_008596.1 6825514 6826359 D identified by similarity to SP:P32064; match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 6825514..6826359 Mycobacterium smegmatis str. MC2 155 4534638 YP_890985.1 CDS MSMEG_6777 NC_008596.1 6826399 6827178 D identified by match to protein family HMM PF00378; enoyl-CoA hydratase 6826399..6827178 Mycobacterium smegmatis str. MC2 155 4537586 YP_890986.1 CDS MSMEG_6778 NC_008596.1 6827190 6827630 R hypothetical protein complement(6827190..6827630) Mycobacterium smegmatis str. MC2 155 4532744 YP_890987.1 CDS MSMEG_6779 NC_008596.1 6827676 6828323 R identified by match to protein family HMM TIGR03083; hypothetical protein complement(6827676..6828323) Mycobacterium smegmatis str. MC2 155 4532448 YP_890988.1 CDS MSMEG_6780 NC_008596.1 6828361 6829233 D identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654; phenazine biosynthesis protein PhzF 6828361..6829233 Mycobacterium smegmatis str. MC2 155 4533014 YP_890989.1 CDS MSMEG_6781 NC_008596.1 6829246 6830718 R hypothetical protein complement(6829246..6830718) Mycobacterium smegmatis str. MC2 155 4535104 YP_890990.1 CDS MSMEG_6782 NC_008596.1 6830819 6831088 D hypothetical protein 6830819..6831088 Mycobacterium smegmatis str. MC2 155 4531627 YP_890991.1 CDS MSMEG_6783 NC_008596.1 6831167 6832159 R integral membrane protein complement(6831167..6832159) Mycobacterium smegmatis str. MC2 155 4534925 YP_890992.1 CDS MSMEG_6784 NC_008596.1 6832219 6833286 R identified by match to protein family HMM PF00144; beta-lactamase complement(6832219..6833286) Mycobacterium smegmatis str. MC2 155 4534533 YP_890993.1 CDS MSMEG_6786 NC_008596.1 6833391 6833990 D hypothetical protein 6833391..6833990 Mycobacterium smegmatis str. MC2 155 4533700 YP_890994.1 CDS tpiA NC_008596.1 6833969 6834760 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(6833969..6834760) Mycobacterium smegmatis str. MC2 155 4533146 YP_890995.1 CDS MSMEG_6787 NC_008596.1 6834753 6835211 R identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR02133; ribose 5-phosphate isomerase complement(6834753..6835211) Mycobacterium smegmatis str. MC2 155 4531552 YP_890996.1 CDS MSMEG_6788 NC_008596.1 6835256 6836971 R in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone; dihydroxyacetone kinase complement(6835256..6836971) Mycobacterium smegmatis str. MC2 155 4535852 YP_890997.1 CDS MSMEG_6789 NC_008596.1 6837064 6837840 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator complement(6837064..6837840) Mycobacterium smegmatis str. MC2 155 4537722 YP_890998.1 CDS MSMEG_6790 NC_008596.1 6838029 6838949 D identified by match to protein family HMM PF01261; AP endonuclease, family protein 2 6838029..6838949 Mycobacterium smegmatis str. MC2 155 4535020 YP_890999.1 CDS MSMEG_6791 NC_008596.1 6838975 6839937 D identified by match to protein family HMM PF00725; match to protein family HMM PF01210; match to protein family HMM PF02737; match to protein family HMM PF03446; 3-hydroxybutyryl-CoA dehydrogenase 6838975..6839937 Mycobacterium smegmatis str. MC2 155 4533563 YP_891000.1 CDS MSMEG_6792 NC_008596.1 6840005 6841405 D identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00791; inner membrane permease YgbN 6840005..6841405 Mycobacterium smegmatis str. MC2 155 4532005 YP_891001.1 CDS MSMEG_6793 NC_008596.1 6841426 6842814 R hypothetical protein complement(6841426..6842814) Mycobacterium smegmatis str. MC2 155 4536632 YP_891002.1 CDS MSMEG_6794 NC_008596.1 6842901 6843767 R identified by match to protein family HMM PF01381; DNA-binding protein complement(6842901..6843767) Mycobacterium smegmatis str. MC2 155 4537687 YP_891003.1 CDS MSMEG_6795 NC_008596.1 6843947 6844789 D identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase 6843947..6844789 Mycobacterium smegmatis str. MC2 155 4536772 YP_891004.1 CDS MSMEG_6796 NC_008596.1 6844782 6845168 D hypothetical protein 6844782..6845168 Mycobacterium smegmatis str. MC2 155 4537636 YP_891005.1 CDS MSMEG_6797 NC_008596.1 6845184 6845597 D identified by match to protein family HMM PF02627; carboxymuconolactone decarboxylase 6845184..6845597 Mycobacterium smegmatis str. MC2 155 4531842 YP_891006.1 CDS rbsR NC_008596.1 6846555 6847553 R identified by similarity to SP:P25551; match to protein family HMM PF00356; match to protein family HMM PF00532; ribose operon repressor complement(6846555..6847553) Mycobacterium smegmatis str. MC2 155 4532651 YP_891007.1 CDS frcK NC_008596.1 6847550 6848200 R fructose transporter kinase complement(6847550..6848200) Mycobacterium smegmatis str. MC2 155 4532274 YP_891008.1 CDS MSMEG_6801 NC_008596.1 6848197 6849126 R identified by match to protein family HMM PF00294; kinase, pfkB family protein complement(6848197..6849126) Mycobacterium smegmatis str. MC2 155 4532278 YP_891009.1 CDS MSMEG_6802 NC_008596.1 6849104 6849895 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(6849104..6849895) Mycobacterium smegmatis str. MC2 155 4535415 YP_891010.1 CDS MSMEG_6803 NC_008596.1 6849892 6850911 R identified by match to protein family HMM PF02653; ribose transporter permease RbsC complement(6849892..6850911) Mycobacterium smegmatis str. MC2 155 4531191 YP_891011.1 CDS MSMEG_6804 NC_008596.1 6850913 6851911 R identified by match to protein family HMM PF00532; sugar ABC transporter substrate-binding protein complement(6850913..6851911) Mycobacterium smegmatis str. MC2 155 4537577 YP_891012.1 CDS MSMEG_6805 NC_008596.1 6852036 6853556 D identified by match to protein family HMM PF00144; beta-lactamase 6852036..6853556 Mycobacterium smegmatis str. MC2 155 4535045 YP_891013.1 CDS uvrA NC_008596.1 6853636 6856158 R identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630; excinuclease ABC subunit A complement(6853636..6856158) Mycobacterium smegmatis str. MC2 155 4531381 YP_891014.1 CDS MSMEG_6807 NC_008596.1 6856188 6856793 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(6856188..6856793) Mycobacterium smegmatis str. MC2 155 4530891 YP_891015.1 CDS MSMEG_6808 NC_008596.1 6856899 6858059 D hypothetical protein 6856899..6858059 Mycobacterium smegmatis str. MC2 155 4536247 YP_891016.1 CDS cbbQ NC_008596.1 6858052 6858855 D identified by match to protein family HMM PF07728; CbbQ protein 6858052..6858855 Mycobacterium smegmatis str. MC2 155 4532543 YP_891017.1 CDS MSMEG_6811 NC_008596.1 6860658 6861881 R hypothetical protein complement(6860658..6861881) Mycobacterium smegmatis str. MC2 155 4534404 YP_891018.1 CDS MSMEG_6813 NC_008596.1 6863010 6863963 R identified by match to protein family HMM PF04909; amidohydrolase complement(6863010..6863963) Mycobacterium smegmatis str. MC2 155 4533894 YP_891019.1 CDS MSMEG_6814 NC_008596.1 6864069 6864503 D identified by match to protein family HMM PF01047; Fis family transcriptional regulator 6864069..6864503 Mycobacterium smegmatis str. MC2 155 4533987 YP_891020.1 CDS MSMEG_6815 NC_008596.1 6864557 6865342 D identified by match to protein family HMM TIGR01409; hypothetical protein 6864557..6865342 Mycobacterium smegmatis str. MC2 155 4531117 YP_891021.1 CDS MSMEG_6816 NC_008596.1 6865435 6867597 D identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; molybdopterin oxidoreductase 6865435..6867597 Mycobacterium smegmatis str. MC2 155 4533484 YP_891022.1 CDS MSMEG_6817 NC_008596.1 6867601 6868491 R identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; igma-70 family RNA polymerase sigma factor complement(6867601..6868491) Mycobacterium smegmatis str. MC2 155 4536237 YP_891023.1 CDS MSMEG_6818 NC_008596.1 6868472 6869674 R identified by match to protein family HMM PF00070; match to protein family HMM PF07992; dehydrogenase complement(6868472..6869674) Mycobacterium smegmatis str. MC2 155 4536990 YP_891024.1 CDS surE NC_008596.1 6870741 6871520 D identified by match to protein family HMM PF01975; match to protein family HMM TIGR00087; acid phosphatase SurE 6870741..6871520 Mycobacterium smegmatis str. MC2 155 4534441 YP_891025.1 CDS MSMEG_6821 NC_008596.1 6871529 6872626 R NLP/P60 family protein complement(6871529..6872626) Mycobacterium smegmatis str. MC2 155 4532824 YP_891026.1 CDS MSMEG_6822 NC_008596.1 6872926 6873837 D identified by match to protein family HMM PF00144; beta-lactamase 6872926..6873837 Mycobacterium smegmatis str. MC2 155 4533381 YP_891027.1 CDS MSMEG_6823 NC_008596.1 6873845 6874579 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short-chain dehydrogenase/reductase SDR complement(6873845..6874579) Mycobacterium smegmatis str. MC2 155 4536402 YP_891028.1 CDS MSMEG_6824 NC_008596.1 6874761 6875474 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(6874761..6875474) Mycobacterium smegmatis str. MC2 155 4531060 YP_891029.1 CDS MSMEG_6825 NC_008596.1 6875373 6876185 D identified by match to protein family HMM PF02517; caax amino protease 6875373..6876185 Mycobacterium smegmatis str. MC2 155 4534854 YP_891030.1 CDS MSMEG_6826 NC_008596.1 6876287 6877969 D identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease 6876287..6877969 Mycobacterium smegmatis str. MC2 155 4534785 YP_891031.1 CDS MSMEG_6827 NC_008596.1 6877979 6878119 R hypothetical protein complement(6877979..6878119) Mycobacterium smegmatis str. MC2 155 4535682 YP_891032.1 CDS MSMEG_6828 NC_008596.1 6878097 6880826 R identified by match to protein family HMM PF00196; transcriptional regulator complement(6878097..6880826) Mycobacterium smegmatis str. MC2 155 4535544 YP_891033.1 CDS MSMEG_6829 NC_008596.1 6880885 6881337 D identified by match to protein family HMM PF01638; transcriptional regulatory protein 6880885..6881337 Mycobacterium smegmatis str. MC2 155 4536270 YP_891034.1 CDS MSMEG_6830 NC_008596.1 6881399 6882127 D hypothetical protein 6881399..6882127 Mycobacterium smegmatis str. MC2 155 4537129 YP_891035.1 CDS MSMEG_6831 NC_008596.1 6882131 6882982 R identified by match to protein family HMM PF00561; hydrolase, alpha/beta hydrolase fold family protein complement(6882131..6882982) Mycobacterium smegmatis str. MC2 155 4537109 YP_891036.1 CDS MSMEG_6832 NC_008596.1 6883001 6883624 R identified by match to protein family HMM TIGR03083; match to protein family HMM TIGR03086; hypothetical protein complement(6883001..6883624) Mycobacterium smegmatis str. MC2 155 4531385 YP_891037.1 CDS MSMEG_6833 NC_008596.1 6883673 6884752 D identified by match to protein family HMM PF00107; alcohol dehydrogenase 6883673..6884752 Mycobacterium smegmatis str. MC2 155 4532537 YP_891038.1 CDS MSMEG_6834 NC_008596.1 6884787 6885815 D identified by match to protein family HMM PF00107; alcohol dehydrogenase 6884787..6885815 Mycobacterium smegmatis str. MC2 155 4536434 YP_891039.1 CDS MSMEG_6835 NC_008596.1 6885835 6887229 R identified by match to protein family HMM PF00487; Fatty acid desaturase complement(6885835..6887229) Mycobacterium smegmatis str. MC2 155 4531933 YP_891040.1 CDS MSMEG_6836 NC_008596.1 6887256 6887666 R identified by match to protein family HMM PF00111; oxidoreductase complement(6887256..6887666) Mycobacterium smegmatis str. MC2 155 4534895 YP_891041.1 CDS MSMEG_6838 NC_008596.1 6887818 6888333 D esterase 6887818..6888333 Mycobacterium smegmatis str. MC2 155 4534338 YP_891042.1 CDS MSMEG_6837 NC_008596.1 6888294 6889229 R catalyzes the cleavage of carbon-halogen bonds in aliphatic compounds forming a primary alcohol and a halide; haloalkane dehalogenase complement(6888294..6889229) Mycobacterium smegmatis str. MC2 155 4537476 YP_891043.1 CDS MSMEG_6839 NC_008596.1 6889400 6890398 D identified by match to protein family HMM PF00165; match to protein family HMM PF01965; AraC family transcriptional regulator 6889400..6890398 Mycobacterium smegmatis str. MC2 155 4533556 YP_891044.1 CDS MSMEG_6840 NC_008596.1 6890416 6891297 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(6890416..6891297) Mycobacterium smegmatis str. MC2 155 4536293 YP_891045.1 CDS MSMEG_6841 NC_008596.1 6891315 6891446 R hypothetical protein complement(6891315..6891446) Mycobacterium smegmatis str. MC2 155 4532049 YP_891046.1 CDS MSMEG_6842 NC_008596.1 6891408 6892730 D identified by match to protein family HMM PF00202; 2,2-dialkylglycine decarboxylase 6891408..6892730 Mycobacterium smegmatis str. MC2 155 4534720 YP_891047.1 CDS MSMEG_6843 NC_008596.1 6892736 6893557 R identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase complement(6892736..6893557) Mycobacterium smegmatis str. MC2 155 4533748 YP_891048.1 CDS MSMEG_6844 NC_008596.1 6893571 6894623 R identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787; match to protein family HMM TIGR01409; trap-t family protein transporter dctp complement(6893571..6894623) Mycobacterium smegmatis str. MC2 155 4534675 YP_891049.1 CDS MSMEG_6845 NC_008596.1 6894636 6895931 R identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786; trap dicarboxylate transporter dctm subunit complement(6894636..6895931) Mycobacterium smegmatis str. MC2 155 4531321 YP_891050.1 CDS MSMEG_6846 NC_008596.1 6895944 6896453 R identified by match to protein family HMM PF04290; C4 decarboxylate transporter complement(6895944..6896453) Mycobacterium smegmatis str. MC2 155 4531179 YP_891051.1 CDS MSMEG_6847 NC_008596.1 6896461 6897615 R hypothetical protein complement(6896461..6897615) Mycobacterium smegmatis str. MC2 155 4536182 YP_891052.1 CDS MSMEG_6848 NC_008596.1 6897798 6899045 R identified by match to protein family HMM PF01243; oxidoreductase complement(6897798..6899045) Mycobacterium smegmatis str. MC2 155 4533145 YP_891053.1 CDS MSMEG_6849 NC_008596.1 6899091 6900023 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(6899091..6900023) Mycobacterium smegmatis str. MC2 155 4532670 YP_891054.1 CDS MSMEG_6850 NC_008596.1 6900106 6900822 D alpha/beta hydrolase 6900106..6900822 Mycobacterium smegmatis str. MC2 155 4536128 YP_891055.1 CDS MSMEG_6852 NC_008596.1 6900861 6901784 D identified by match to protein family HMM PF07859; carboxylesterase/lipase 6900861..6901784 Mycobacterium smegmatis str. MC2 155 4532851 YP_891056.1 CDS MSMEG_6851 NC_008596.1 6901769 6902308 R identified by match to protein family HMM PF01161; phosphatidylethanolamine-binding protein complement(6901769..6902308) Mycobacterium smegmatis str. MC2 155 4537579 YP_891057.1 CDS MSMEG_6853 NC_008596.1 6902305 6902853 R identified by match to protein family HMM PF00694; match to protein family HMM TIGR02087; 3-isopropylmalate dehydratase small subunit complement(6902305..6902853) Mycobacterium smegmatis str. MC2 155 4533244 YP_891058.1 CDS MSMEG_6854 NC_008596.1 6902850 6904118 R identified by match to protein family HMM PF00330; match to protein family HMM TIGR01343; 3-isopropylmalate dehydratase large subunit complement(6902850..6904118) Mycobacterium smegmatis str. MC2 155 4534091 YP_891059.1 CDS MSMEG_6855 NC_008596.1 6904120 6905010 R carboxyvinyl-carboxyphosphonate phosphorylmutase complement(6904120..6905010) Mycobacterium smegmatis str. MC2 155 4535662 YP_891060.1 CDS MSMEG_6856 NC_008596.1 6905010 6906443 R identified by match to protein family HMM PF03972; MmgE/PrpD family protein complement(6905010..6906443) Mycobacterium smegmatis str. MC2 155 4532600 YP_891061.1 CDS MSMEG_6857 NC_008596.1 6906505 6907275 D identified by match to protein family HMM PF01614; transcriptional regulator 6906505..6907275 Mycobacterium smegmatis str. MC2 155 4532056 YP_891062.1 CDS MSMEG_6858 NC_008596.1 6907277 6908395 R identified by match to protein family HMM PF00561; match to protein family HMM PF06441; epoxide hydrolase 1 complement(6907277..6908395) Mycobacterium smegmatis str. MC2 155 4536268 YP_891063.1 CDS MSMEG_6859 NC_008596.1 6908449 6909201 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; oxidoreductase complement(6908449..6909201) Mycobacterium smegmatis str. MC2 155 4536793 YP_891064.1 CDS MSMEG_6860 NC_008596.1 6909291 6909740 R hypothetical protein complement(6909291..6909740) Mycobacterium smegmatis str. MC2 155 4533409 YP_891065.1 CDS MSMEG_6861 NC_008596.1 6909812 6910366 R identified by match to protein family HMM PF07883; cupin complement(6909812..6910366) Mycobacterium smegmatis str. MC2 155 4536973 YP_891066.1 CDS MSMEG_6862 NC_008596.1 6910524 6911108 D identified by match to protein family HMM PF00440; transcriptional regulator 6910524..6911108 Mycobacterium smegmatis str. MC2 155 4531361 YP_891067.1 CDS MSMEG_6863 NC_008596.1 6911105 6911872 D identified by match to protein family HMM PF00596; aldolase 6911105..6911872 Mycobacterium smegmatis str. MC2 155 4532753 YP_891068.1 CDS MSMEG_6864 NC_008596.1 6912063 6912752 R transcriptional regulator complement(6912063..6912752) Mycobacterium smegmatis str. MC2 155 4532703 YP_891069.1 CDS MSMEG_6865 NC_008596.1 6912890 6914365 D identified by match to protein family HMM PF00496; match to protein family HMM TIGR01409; ABC transporter substrate-binding protein 6912890..6914365 Mycobacterium smegmatis str. MC2 155 4532886 YP_891070.1 CDS MSMEG_6866 NC_008596.1 6914358 6915356 D identified by match to protein family HMM PF00528; peptide ABC transporter permease 6914358..6915356 Mycobacterium smegmatis str. MC2 155 4536567 YP_891071.1 CDS MSMEG_6867 NC_008596.1 6915356 6916180 D identified by match to protein family HMM PF00528; oligopeptide ABC transporter integral membrane protein 6915356..6916180 Mycobacterium smegmatis str. MC2 155 4534741 YP_891072.1 CDS MSMEG_6869 NC_008596.1 6917828 6918790 R identified by match to protein family HMM PF00480; regulatory protein complement(6917828..6918790) Mycobacterium smegmatis str. MC2 155 4533871 YP_891073.1 CDS MSMEG_6870 NC_008596.1 6918823 6919647 D identified by match to protein family HMM PF02633; creatinine amidohydrolase 6918823..6919647 Mycobacterium smegmatis str. MC2 155 4533380 YP_891074.1 CDS MSMEG_6871 NC_008596.1 6919644 6920771 D identified by match to protein family HMM PF01188; match to protein family HMM PF02746; isomerase 6919644..6920771 Mycobacterium smegmatis str. MC2 155 4531831 YP_891075.1 CDS MSMEG_6872 NC_008596.1 6920768 6921817 D identified by match to protein family HMM PF00144; beta-lactamase 6920768..6921817 Mycobacterium smegmatis str. MC2 155 4534324 YP_891076.1 CDS MSMEG_6874 NC_008596.1 6922554 6924056 R identified by match to protein family HMM PF00171; aldehyde dehydrogenase complement(6922554..6924056) Mycobacterium smegmatis str. MC2 155 4536843 YP_891077.1 CDS MSMEG_6875 NC_008596.1 6924099 6925229 R identified by match to protein family HMM PF01042; endoribonuclease L-PSP family protein complement(6924099..6925229) Mycobacterium smegmatis str. MC2 155 4537440 YP_891078.1 CDS MSMEG_6876 NC_008596.1 6925321 6926043 R identified by match to protein family HMM PF00005; branched chain amino acid transport ATP-binding protein complement(6925321..6926043) Mycobacterium smegmatis str. MC2 155 4535641 YP_891079.1 CDS MSMEG_6877 NC_008596.1 6926040 6926819 R identified by match to protein family HMM PF00005; branched-chain amino acid transporter ATP-binding protein complement(6926040..6926819) Mycobacterium smegmatis str. MC2 155 4535422 YP_891080.1 CDS MSMEG_6878 NC_008596.1 6926816 6927790 R identified by match to protein family HMM PF02653; inner-membrane translocator complement(6926816..6927790) Mycobacterium smegmatis str. MC2 155 4531642 YP_891081.1 CDS MSMEG_6879 NC_008596.1 6927790 6928701 R identified by match to protein family HMM PF02653; integral membrane protein NatD complement(6927790..6928701) Mycobacterium smegmatis str. MC2 155 4532193 YP_891082.1 CDS MSMEG_6880 NC_008596.1 6928729 6930018 R identified by match to protein family HMM PF01094; hydrophobic amino acid ABC transporter complement(6928729..6930018) Mycobacterium smegmatis str. MC2 155 4532721 YP_891083.1 CDS MSMEG_6881 NC_008596.1 6930093 6930722 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator complement(6930093..6930722) Mycobacterium smegmatis str. MC2 155 4535958 YP_891084.1 CDS MSMEG_6882 NC_008596.1 6931229 6932188 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(6931229..6932188) Mycobacterium smegmatis str. MC2 155 4535304 YP_891085.1 CDS MSMEG_6884 NC_008596.1 6932415 6932957 D identified by match to protein family HMM PF03807; NADP oxidoreductase, coenzyme f420-dependent:6-phosphogluconate dehydrogenase, NAD-binding 6932415..6932957 Mycobacterium smegmatis str. MC2 155 4531840 YP_891086.1 CDS MSMEG_6885 NC_008596.1 6933023 6933847 D MmcI protein 6933023..6933847 Mycobacterium smegmatis str. MC2 155 4531773 YP_891087.1 CDS MSMEG_6886 NC_008596.1 6933892 6934254 R identified by match to protein family HMM PF01638; transcriptional regulator complement(6933892..6934254) Mycobacterium smegmatis str. MC2 155 4536152 YP_891088.1 CDS MSMEG_6887 NC_008596.1 6934366 6935613 D identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase 6934366..6935613 Mycobacterium smegmatis str. MC2 155 4533115 YP_891089.1 CDS MSMEG_6888 NC_008596.1 6935806 6936627 R identified by match to protein family HMM PF00665; transposase subunit complement(6935806..6936627) Mycobacterium smegmatis str. MC2 155 4531123 YP_891090.1 CDS MSMEG_6889 NC_008596.1 6936660 6936968 R identified by match to protein family HMM PF01527; transposase complement(6936660..6936968) Mycobacterium smegmatis str. MC2 155 4535250 YP_891091.1 CDS MSMEG_6890 NC_008596.1 6937052 6937345 D identified by match to protein family HMM PF03992; antibiotic biosynthesis monooxygenase domain-containing protein 6937052..6937345 Mycobacterium smegmatis str. MC2 155 4536523 YP_891092.1 CDS MSMEG_6892 NC_008596.1 6937984 6941058 R identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR01443; match to protein family HMM TIGR01445; replicative DNA helicase complement(6937984..6941058) Mycobacterium smegmatis str. MC2 155 4532570 YP_891093.1 CDS MSMEG_6893 NC_008596.1 6941041 6941307 D hypothetical protein 6941041..6941307 Mycobacterium smegmatis str. MC2 155 4535234 YP_891094.1 CDS rplI NC_008596.1 6941588 6942043 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(6941588..6942043) Mycobacterium smegmatis str. MC2 155 4533037 YP_891095.1 CDS rpsR NC_008596.1 6942062 6942316 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(6942062..6942316) Mycobacterium smegmatis str. MC2 155 4534936 YP_891096.1 CDS MSMEG_6896 NC_008596.1 6942354 6942851 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(6942354..6942851) Mycobacterium smegmatis str. MC2 155 4534331 YP_891097.1 CDS rpsF NC_008596.1 6942924 6943196 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(6942924..6943196) Mycobacterium smegmatis str. MC2 155 4534340 YP_891098.1 CDS MSMEG_6898 NC_008596.1 6943613 6944188 R hypothetical protein complement(6943613..6944188) Mycobacterium smegmatis str. MC2 155 4531069 YP_891099.1 CDS MSMEG_6899 NC_008596.1 6943954 6945618 R hypothetical protein complement(6943954..6945618) Mycobacterium smegmatis str. MC2 155 4533428 YP_891100.1 CDS MSMEG_6900 NC_008596.1 6945615 6947972 R identified by match to protein family HMM PF00905; match to protein family HMM PF00912; penicillin-binding protein 1 complement(6945615..6947972) Mycobacterium smegmatis str. MC2 155 4536904 YP_891101.1 CDS MSMEG_6901 NC_008596.1 6948091 6948579 R hypothetical protein complement(6948091..6948579) Mycobacterium smegmatis str. MC2 155 4535771 YP_891102.1 CDS MSMEG_6902 NC_008596.1 6948592 6949461 D identified by match to protein family HMM PF08044; hypothetical protein 6948592..6949461 Mycobacterium smegmatis str. MC2 155 4533834 YP_891103.1 CDS MSMEG_6903 NC_008596.1 6949596 6950150 D identified by match to protein family HMM PF03551; PadR family transcriptional regulator 6949596..6950150 Mycobacterium smegmatis str. MC2 155 4534840 YP_891104.1 CDS MSMEG_6904 NC_008596.1 6950228 6951319 D identified by match to protein family HMM PF01658; match to protein family HMM PF07994; myo-inositol-1-phosphate synthase 6950228..6951319 Mycobacterium smegmatis str. MC2 155 4532403 YP_891105.1 CDS MSMEG_6906 NC_008596.1 6951391 6952305 D identified by match to protein family HMM PF00561; hydrolase 6951391..6952305 Mycobacterium smegmatis str. MC2 155 4531539 YP_891106.1 CDS MSMEG_6907 NC_008596.1 6952349 6953122 D MmcI protein 6952349..6953122 Mycobacterium smegmatis str. MC2 155 4535317 YP_891107.1 CDS MSMEG_6908 NC_008596.1 6953210 6953875 D identified by match to protein family HMM PF00392; HTH-type transcriptional regulator 6953210..6953875 Mycobacterium smegmatis str. MC2 155 4536770 YP_891108.1 CDS MSMEG_6909 NC_008596.1 6953922 6955694 D identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease 6953922..6955694 Mycobacterium smegmatis str. MC2 155 4537203 YP_891109.1 CDS MSMEG_6911 NC_008596.1 6955694 6956431 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 6955694..6956431 Mycobacterium smegmatis str. MC2 155 4536496 YP_891110.1 CDS MSMEG_6913 NC_008596.1 6956496 6956996 D identified by match to protein family HMM PF01047; transcriptional regulatory protein 6956496..6956996 Mycobacterium smegmatis str. MC2 155 4532052 YP_891111.1 CDS MSMEG_6914 NC_008596.1 6957005 6958345 R hypothetical protein complement(6957005..6958345) Mycobacterium smegmatis str. MC2 155 4534893 YP_891112.1 CDS MSMEG_6916 NC_008596.1 6958400 6959065 D identified by match to protein family HMM PF00106; short chain dehydrogenase 6958400..6959065 Mycobacterium smegmatis str. MC2 155 4537281 YP_891113.1 CDS leuS NC_008596.1 6959072 6961933 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(6959072..6961933) Mycobacterium smegmatis str. MC2 155 4535790 YP_891114.1 CDS MSMEG_6919 NC_008596.1 6962147 6963091 D hypothetical protein 6962147..6963091 Mycobacterium smegmatis str. MC2 155 4536289 YP_891115.1 CDS MSMEG_6920 NC_008596.1 6963161 6963529 D hypothetical protein 6963161..6963529 Mycobacterium smegmatis str. MC2 155 4535172 YP_891116.1 CDS MSMEG_6921 NC_008596.1 6963530 6964135 R identified by match to protein family HMM PF02622; hypothetical protein complement(6963530..6964135) Mycobacterium smegmatis str. MC2 155 4534355 YP_891117.1 CDS MSMEG_6922 NC_008596.1 6964262 6965557 D identified by match to protein family HMM PF07690; transporter major facilitator family protein 6964262..6965557 Mycobacterium smegmatis str. MC2 155 4532699 YP_891118.1 CDS MSMEG_6923 NC_008596.1 6965572 6966345 D identified by match to protein family HMM TIGR03083; match to protein family HMM TIGR03084; hypothetical protein 6965572..6966345 Mycobacterium smegmatis str. MC2 155 4532279 YP_891119.1 CDS MSMEG_6925 NC_008596.1 6966439 6966936 R hypothetical protein complement(6966439..6966936) Mycobacterium smegmatis str. MC2 155 4531496 YP_891120.1 CDS MSMEG_6926 NC_008596.1 6966955 6968397 R identified by match to protein family HMM PF01743; match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR02692; tRNA adenylyltransferase complement(6966955..6968397) Mycobacterium smegmatis str. MC2 155 4536847 YP_891121.1 CDS MSMEG_6927 NC_008596.1 6968482 6969375 D identified by match to protein family HMM PF00293; MutT/nudix family protein 6968482..6969375 Mycobacterium smegmatis str. MC2 155 4531030 YP_891122.1 CDS MSMEG_6928 NC_008596.1 6969396 6971798 D hypothetical protein 6969396..6971798 Mycobacterium smegmatis str. MC2 155 4531565 YP_891123.1 CDS MSMEG_6929 NC_008596.1 6971795 6975445 D identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695; hypothetical protein 6971795..6975445 Mycobacterium smegmatis str. MC2 155 4531312 YP_891124.1 CDS MSMEG_6931 NC_008596.1 6975546 6976172 D identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; RNA polymerase sigma-70 factor 6975546..6976172 Mycobacterium smegmatis str. MC2 155 4534465 YP_891125.1 CDS MSMEG_6930 NC_008596.1 6976060 6976977 R hypothetical protein complement(6976060..6976977) Mycobacterium smegmatis str. MC2 155 4534742 YP_891126.1 CDS MSMEG_6932 NC_008596.1 6976123 6976860 D hypothetical protein 6976123..6976860 Mycobacterium smegmatis str. MC2 155 4532996 YP_891127.1 CDS trxB NC_008596.1 6976965 6977900 D identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase 6976965..6977900 Mycobacterium smegmatis str. MC2 155 4533041 YP_891128.1 CDS trx NC_008596.1 6977934 6978266 D identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 6977934..6978266 Mycobacterium smegmatis str. MC2 155 4531294 YP_891129.1 CDS MSMEG_6935 NC_008596.1 6978405 6979595 D identified by match to protein family HMM PF01471; match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase 6978405..6979595 Mycobacterium smegmatis str. MC2 155 4531699 YP_891130.1 CDS MSMEG_6936 NC_008596.1 6979641 6980393 R hypothetical protein complement(6979641..6980393) Mycobacterium smegmatis str. MC2 155 4531962 YP_891131.1 CDS MSMEG_6938 NC_008596.1 6980632 6981687 R identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB-like partition proteins complement(6980632..6981687) Mycobacterium smegmatis str. MC2 155 4531893 YP_891132.1 CDS MSMEG_6939 NC_008596.1 6981747 6982718 R identified by match to protein family HMM PF01656; Soj family protein complement(6981747..6982718) Mycobacterium smegmatis str. MC2 155 4531872 YP_891133.1 CDS gidB NC_008596.1 6982721 6983428 R identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138; methyltransferase GidB complement(6982721..6983428) Mycobacterium smegmatis str. MC2 155 4536495 YP_891134.1 CDS MSMEG_6941 NC_008596.1 6983492 6984043 R identified by match to protein family HMM PF01424; R3H domain-containing protein complement(6983492..6984043) Mycobacterium smegmatis str. MC2 155 4533236 YP_891135.1 CDS MSMEG_6942 NC_008596.1 6984079 6985182 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC complement(6984079..6985182) Mycobacterium smegmatis str. MC2 155 4535687 YP_891136.1 CDS MSMEG_6944 NC_008596.1 6985175 6985522 R identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein complement(6985175..6985522) Mycobacterium smegmatis str. MC2 155 4532254 YP_891137.1 CDS rnpA NC_008596.1 6985519 6985890 R identified by match to protein family HMM PF00825; match to protein family HMM TIGR00188; ribonuclease P protein component complement(6985519..6985890) Mycobacterium smegmatis str. MC2 155 4536713 YP_891138.1 CDS rpmH NC_008596.1 6985943 6986086 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(6985943..6986086) Mycobacterium smegmatis str. MC2 155 4534316 YP_891139.1 CDS dnaA NC_008596.1 6986600 6988114 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 6986600..6988114 Mycobacterium smegmatis str. MC2 155 4531721 MSMEG_0008 tRNA MSMEG_0008 NC_008596.1 10072 10148 D tRNA-Ile 10072..10148 Mycobacterium smegmatis str. MC2 155 4530928 MSMEG_0010 tRNA MSMEG_0010 NC_008596.1 10293 10368 D tRNA-Ala 10293..10368 Mycobacterium smegmatis str. MC2 155 4531783 MSMEG_0037 tRNA MSMEG_0037 NC_008596.1 58144 58226 D tRNA-Leu 58144..58226 Mycobacterium smegmatis str. MC2 155 4531973 MSMEG_0677 tRNA MSMEG_0677 NC_008596.1 760001 760074 R tRNA-Gly complement(760001..760074) Mycobacterium smegmatis str. MC2 155 4531975 MSMEG_1166 tRNA MSMEG_1166 NC_008596.1 1228393 1228478 D tRNA-Tyr 1228393..1228478 Mycobacterium smegmatis str. MC2 155 4531976 MSMEG_1337 tRNA MSMEG_1337 NC_008596.1 1435983 1436055 D tRNA-Thr 1435983..1436055 Mycobacterium smegmatis str. MC2 155 4533348 MSMEG_1338 tRNA MSMEG_1338 NC_008596.1 1436094 1436167 D tRNA-Met 1436094..1436167 Mycobacterium smegmatis str. MC2 155 4531786 MSMEG_1343 tRNA MSMEG_1343 NC_008596.1 1437965 1438037 D tRNA-Trp 1437965..1438037 Mycobacterium smegmatis str. MC2 155 4533343 MSMEG_1851 tRNA MSMEG_1851 NC_008596.1 1928428 1928522 R tRNA-Sec complement(1928428..1928522) Mycobacterium smegmatis str. MC2 155 4533643 MSMEG_1965 tRNA MSMEG_1965 NC_008596.1 2047596 2047672 D tRNA-Met 2047596..2047672 Mycobacterium smegmatis str. MC2 155 4533644 MSMEG_2138 tRNA MSMEG_2138 NC_008596.1 2213142 2213214 D tRNA-Ala 2213142..2213214 Mycobacterium smegmatis str. MC2 155 4531782 MSMEG_2384 tRNA MSMEG_2384 NC_008596.1 2467984 2468058 D tRNA-Gln 2467984..2468058 Mycobacterium smegmatis str. MC2 155 4533347 MSMEG_2385 tRNA MSMEG_2385 NC_008596.1 2468127 2468202 D tRNA-Glu 2468127..2468202 Mycobacterium smegmatis str. MC2 155 4533647 MSMEG_2833 tRNA MSMEG_2833 NC_008596.1 2895086 2895160 R tRNA-Val complement(2895086..2895160) Mycobacterium smegmatis str. MC2 155 4531784 MSMEG_2834 tRNA MSMEG_2834 NC_008596.1 2895172 2895245 R tRNA-Cys complement(2895172..2895245) Mycobacterium smegmatis str. MC2 155 4533645 MSMEG_2835 tRNA MSMEG_2835 NC_008596.1 2895271 2895346 R tRNA-Gly complement(2895271..2895346) Mycobacterium smegmatis str. MC2 155 4530934 MSMEG_2836 tRNA MSMEG_2836 NC_008596.1 2895813 2895887 D tRNA-Val 2895813..2895887 Mycobacterium smegmatis str. MC2 155 4531781 MSMEG_3245 tRNA MSMEG_3245 NC_008596.1 3328690 3328766 R tRNA-Leu complement(3328690..3328766) Mycobacterium smegmatis str. MC2 155 4533642 MSMEG_3734 tRNA MSMEG_3734 NC_008596.1 3800546 3800622 R tRNA-Pro complement(3800546..3800622) Mycobacterium smegmatis str. MC2 155 4531971 MSMEG_3814 tRNA MSMEG_3814 NC_008596.1 3883645 3883718 R tRNA-Cys complement(3883645..3883718) Mycobacterium smegmatis str. MC2 155 4533346 MSMEG_4201 tRNA MSMEG_4201 NC_008596.1 4278994 4279079 D tRNA-Leu 4278994..4279079 Mycobacterium smegmatis str. MC2 155 4530929 MSMEG_4319 tRNA MSMEG_4319 NC_008596.1 4405775 4405846 R tRNA-Val complement(4405775..4405846) Mycobacterium smegmatis str. MC2 155 4530931 MSMEG_4452 tRNA MSMEG_4452 NC_008596.1 4532821 4532894 R tRNA-Met complement(4532821..4532894) Mycobacterium smegmatis str. MC2 155 4533344 MSMEG_4478 tRNA MSMEG_4478 NC_008596.1 4561207 4561282 R tRNA-Asn complement(4561207..4561282) Mycobacterium smegmatis str. MC2 155 4530932 MSMEG_4675 tRNA MSMEG_4675 NC_008596.1 4764298 4764371 R tRNA-Pro complement(4764298..4764371) Mycobacterium smegmatis str. MC2 155 4533342 MSMEG_4676 tRNA MSMEG_4676 NC_008596.1 4764493 4764563 D tRNA-Gly 4764493..4764563 Mycobacterium smegmatis str. MC2 155 4531977 MSMEG_4706 tRNA MSMEG_4706 NC_008596.1 4797480 4797552 D tRNA-Arg 4797480..4797552 Mycobacterium smegmatis str. MC2 155 4533341 MSMEG_4725 tRNA MSMEG_4725 NC_008596.1 4817832 4817907 D tRNA-His 4817832..4817907 Mycobacterium smegmatis str. MC2 155 4533650 MSMEG_4746 tRNA MSMEG_4746 NC_008596.1 4847908 4847983 D tRNA-Lys 4847908..4847983 Mycobacterium smegmatis str. MC2 155 4533649 MSMEG_4897 tRNA MSMEG_4897 NC_008596.1 4992841 4992927 R tRNA-Leu complement(4992841..4992927) Mycobacterium smegmatis str. MC2 155 4531978 MSMEG_4960 tRNA MSMEG_4960 NC_008596.1 5058252 5058327 D tRNA-Arg 5058252..5058327 Mycobacterium smegmatis str. MC2 155 4531974 MSMEG_5380 tRNA MSMEG_5380 NC_008596.1 5458911 5458984 R tRNA-Leu complement(5458911..5458984) Mycobacterium smegmatis str. MC2 155 4530936 MSMEG_5425 tRNA MSMEG_5425 NC_008596.1 5509404 5509475 D tRNA-Gln 5509404..5509475 Mycobacterium smegmatis str. MC2 155 4531785 MSMEG_5467 tRNA MSMEG_5467 NC_008596.1 5550049 5550124 R tRNA-Ala complement(5550049..5550124) Mycobacterium smegmatis str. MC2 155 4530935 MSMEG_5598 tRNA MSMEG_5598 NC_008596.1 5685927 5685999 D tRNA-Arg 5685927..5685999 Mycobacterium smegmatis str. MC2 155 4531780 MSMEG_5755 tRNA MSMEG_5755 NC_008596.1 5834094 5834167 R tRNA-Phe complement(5834094..5834167) Mycobacterium smegmatis str. MC2 155 4533345 MSMEG_5756 tRNA MSMEG_5756 NC_008596.1 5834209 5834285 R tRNA-Asp complement(5834209..5834285) Mycobacterium smegmatis str. MC2 155 4533648 MSMEG_5757 tRNA MSMEG_5757 NC_008596.1 5834322 5834394 R tRNA-Glu complement(5834322..5834394) Mycobacterium smegmatis str. MC2 155 4533340 MSMEG_5758 tRNA MSMEG_5758 NC_008596.1 5834573 5834645 D tRNA-Lys 5834573..5834645 Mycobacterium smegmatis str. MC2 155 4533646 MSMEG_5874 tRNA MSMEG_5874 NC_008596.1 5937904 5937978 D tRNA-Thr 5937904..5937978 Mycobacterium smegmatis str. MC2 155 4531972 MSMEG_6152 tRNA MSMEG_6152 NC_008596.1 6220991 6221063 R tRNA-Thr complement(6220991..6221063) Mycobacterium smegmatis str. MC2 155 4531979 MSMEG_6204 tRNA MSMEG_6204 NC_008596.1 6272367 6272440 D tRNA-Pro 6272367..6272440 Mycobacterium smegmatis str. MC2 155 4530930 MSMEG_6287 tRNA MSMEG_6287 NC_008596.1 6352992 6353077 D tRNA-Ser 6352992..6353077 Mycobacterium smegmatis str. MC2 155 4530927 MSMEG_6326 tRNA MSMEG_6326 NC_008596.1 6393822 6393912 R tRNA-Ser complement(6393822..6393912) Mycobacterium smegmatis str. MC2 155 4531778 MSMEG_6349 tRNA MSMEG_6349 NC_008596.1 6410366 6410438 R tRNA-Arg complement(6410366..6410438) Mycobacterium smegmatis str. MC2 155 4531777 MSMEG_6350 tRNA MSMEG_6350 NC_008596.1 6410476 6410567 R tRNA-Ser complement(6410476..6410567) Mycobacterium smegmatis str. MC2 155 4530933 MSMEG_6360 tRNA MSMEG_6360 NC_008596.1 6417690 6417776 R tRNA-Ser complement(6417690..6417776) Mycobacterium smegmatis str. MC2 155 4531779 MSMEG_3755 rRNA rrfA NC_008596.1 3819868 3819985 R 5S ribosomal RNA complement(3819868..3819985) Mycobacterium smegmatis str. MC2 155 4531790 MSMEG_3756 rRNA rrlA NC_008596.1 3820128 3823247 R 23S ribosomal RNA complement(join(3820128..3821635,3821694..3823247)) Mycobacterium smegmatis str. MC2 155 4531788 MSMEG_3757 rRNA rrsA NC_008596.1 3823615 3825142 R 16S ribosomal RNA complement(3823615..3825142) Mycobacterium smegmatis str. MC2 155 4531789 MSMEG_4929 rRNA rrfB NC_008596.1 5024201 5024318 R 5S ribosomal RNA complement(5024201..5024318) Mycobacterium smegmatis str. MC2 155 4531792 MSMEG_4930 rRNA rrlB NC_008596.1 5024461 5027580 R 23S ribosomal RNA complement(join(5024461..5025968,5026027..5027580)) Mycobacterium smegmatis str. MC2 155 4531787 MSMEG_4931 rRNA rrsB NC_008596.1 5027948 5029475 R 16S ribosomal RNA complement(5027948..5029475) Mycobacterium smegmatis str. MC2 155 4531791