-- dump date 20250217_001035 -- class Genbank::Contig -- table contig_comment -- id comment NZ_AP018165.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to AP018165.1.REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com.REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jpREFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37xREFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBioREFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002356335.1-RS_2024_12_13REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002356335.1-RS_2024_12_13 Annotation Date :: 12/13/2024 14:05:32REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002356335.1-RS_2024_12_13 Annotation Date :: 12/13/2024 14:05:32 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002356335.1-RS_2024_12_13 Annotation Date :: 12/13/2024 14:05:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002356335.1-RS_2024_12_13 Annotation Date :: 12/13/2024 14:05:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002356335.1-RS_2024_12_13 Annotation Date :: 12/13/2024 14:05:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002356335.1-RS_2024_12_13 Annotation Date :: 12/13/2024 14:05:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002356335.1-RS_2024_12_13 Annotation Date :: 12/13/2024 14:05:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002356335.1-RS_2024_12_13 Annotation Date :: 12/13/2024 14:05:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,976REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002356335.1-RS_2024_12_13 Annotation Date :: 12/13/2024 14:05:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,976 CDSs (total) :: 4,921REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002356335.1-RS_2024_12_13 Annotation Date :: 12/13/2024 14:05:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,976 CDSs (total) :: 4,921 Genes (coding) :: 4,776REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002356335.1-RS_2024_12_13 Annotation Date :: 12/13/2024 14:05:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,976 CDSs (total) :: 4,921 Genes (coding) :: 4,776 CDSs (with protein) :: 4,776REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002356335.1-RS_2024_12_13 Annotation Date :: 12/13/2024 14:05:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,976 CDSs (total) :: 4,921 Genes (coding) :: 4,776 CDSs (with protein) :: 4,776 Genes (RNA) :: 55REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002356335.1-RS_2024_12_13 Annotation Date :: 12/13/2024 14:05:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,976 CDSs (total) :: 4,921 Genes (coding) :: 4,776 CDSs (with protein) :: 4,776 Genes (RNA) :: 55 rRNAs :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002356335.1-RS_2024_12_13 Annotation Date :: 12/13/2024 14:05:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,976 CDSs (total) :: 4,921 Genes (coding) :: 4,776 CDSs (with protein) :: 4,776 Genes (RNA) :: 55 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002356335.1-RS_2024_12_13 Annotation Date :: 12/13/2024 14:05:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,976 CDSs (total) :: 4,921 Genes (coding) :: 4,776 CDSs (with protein) :: 4,776 Genes (RNA) :: 55 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 49REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002356335.1-RS_2024_12_13 Annotation Date :: 12/13/2024 14:05:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,976 CDSs (total) :: 4,921 Genes (coding) :: 4,776 CDSs (with protein) :: 4,776 Genes (RNA) :: 55 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002356335.1-RS_2024_12_13 Annotation Date :: 12/13/2024 14:05:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,976 CDSs (total) :: 4,921 Genes (coding) :: 4,776 CDSs (with protein) :: 4,776 Genes (RNA) :: 55 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 145REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002356335.1-RS_2024_12_13 Annotation Date :: 12/13/2024 14:05:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,976 CDSs (total) :: 4,921 Genes (coding) :: 4,776 CDSs (with protein) :: 4,776 Genes (RNA) :: 55 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 145 CDSs (without protein) :: 145REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002356335.1-RS_2024_12_13 Annotation Date :: 12/13/2024 14:05:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,976 CDSs (total) :: 4,921 Genes (coding) :: 4,776 CDSs (with protein) :: 4,776 Genes (RNA) :: 55 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 145 CDSs (without protein) :: 145 Pseudo Genes (ambiguous residues) :: 0 of 145REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002356335.1-RS_2024_12_13 Annotation Date :: 12/13/2024 14:05:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,976 CDSs (total) :: 4,921 Genes (coding) :: 4,776 CDSs (with protein) :: 4,776 Genes (RNA) :: 55 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 145 CDSs (without protein) :: 145 Pseudo Genes (ambiguous residues) :: 0 of 145 Pseudo Genes (frameshifted) :: 77 of 145REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002356335.1-RS_2024_12_13 Annotation Date :: 12/13/2024 14:05:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,976 CDSs (total) :: 4,921 Genes (coding) :: 4,776 CDSs (with protein) :: 4,776 Genes (RNA) :: 55 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 145 CDSs (without protein) :: 145 Pseudo Genes (ambiguous residues) :: 0 of 145 Pseudo Genes (frameshifted) :: 77 of 145 Pseudo Genes (incomplete) :: 69 of 145REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002356335.1-RS_2024_12_13 Annotation Date :: 12/13/2024 14:05:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,976 CDSs (total) :: 4,921 Genes (coding) :: 4,776 CDSs (with protein) :: 4,776 Genes (RNA) :: 55 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 145 CDSs (without protein) :: 145 Pseudo Genes (ambiguous residues) :: 0 of 145 Pseudo Genes (frameshifted) :: 77 of 145 Pseudo Genes (incomplete) :: 69 of 145 Pseudo Genes (internal stop) :: 22 of 145REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002356335.1-RS_2024_12_13 Annotation Date :: 12/13/2024 14:05:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,976 CDSs (total) :: 4,921 Genes (coding) :: 4,776 CDSs (with protein) :: 4,776 Genes (RNA) :: 55 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 145 CDSs (without protein) :: 145 Pseudo Genes (ambiguous residues) :: 0 of 145 Pseudo Genes (frameshifted) :: 77 of 145 Pseudo Genes (incomplete) :: 69 of 145 Pseudo Genes (internal stop) :: 22 of 145 Pseudo Genes (multiple problems) :: 20 of 145REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002356335.1-RS_2024_12_13 Annotation Date :: 12/13/2024 14:05:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,976 CDSs (total) :: 4,921 Genes (coding) :: 4,776 CDSs (with protein) :: 4,776 Genes (RNA) :: 55 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 145 CDSs (without protein) :: 145 Pseudo Genes (ambiguous residues) :: 0 of 145 Pseudo Genes (frameshifted) :: 77 of 145 Pseudo Genes (incomplete) :: 69 of 145 Pseudo Genes (internal stop) :: 22 of 145 Pseudo Genes (multiple problems) :: 20 of 145 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to AP018165.1. Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 37x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002356335.1-RS_2024_12_13 Annotation Date :: 12/13/2024 14:05:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,976 CDSs (total) :: 4,921 Genes (coding) :: 4,776 CDSs (with protein) :: 4,776 Genes (RNA) :: 55 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 49 ncRNAs :: 3 Pseudo Genes (total) :: 145 CDSs (without protein) :: 145 Pseudo Genes (ambiguous residues) :: 0 of 145 Pseudo Genes (frameshifted) :: 77 of 145 Pseudo Genes (incomplete) :: 69 of 145 Pseudo Genes (internal stop) :: 22 of 145 Pseudo Genes (multiple problems) :: 20 of 145 ##Genome-Annotation-Data-END## COMPLETENESS: full length.