-- dump date 20140619_161024 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_278806.1 71893360 3563901 198..1598 1 NC_007295.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 1598 dnaA 3563901 dnaA Mycoplasma hyopneumoniae J chromosome replication initiator DnaA YP_278806.1 198 D 262719 CDS YP_278807.1 71893361 3563902 1743..2879 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0592; DNA polymerase III subunit beta 2879 dnaN 3563902 dnaN Mycoplasma hyopneumoniae J DNA polymerase III subunit beta YP_278807.1 1743 D 262719 CDS YP_278808.1 71893362 3563903 3010..4842 1 NC_007295.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 4842 gidA 3563903 gidA Mycoplasma hyopneumoniae J tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA YP_278808.1 3010 D 262719 CDS YP_278809.1 71893363 3563904 4854..5300 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1576; hypothetical protein 5300 3563904 MHJ_0004 Mycoplasma hyopneumoniae J hypothetical protein YP_278809.1 4854 D 262719 CDS YP_278810.1 71893364 3563905 5314..6297 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0618; MgpA like-protein 6297 3563905 MHJ_0005 Mycoplasma hyopneumoniae J MgpA like-protein YP_278810.1 5314 D 262719 CDS YP_278811.1 71893365 3563906 6299..7261 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0618; DHH family phosphoesterase 7261 3563906 MHJ_0006 Mycoplasma hyopneumoniae J DHH family phosphoesterase YP_278811.1 6299 D 262719 CDS YP_278812.1 71893366 3563650 7289..7933 1 NC_007295.1 hypothetical protein 7933 3563650 MHJ_0007 Mycoplasma hyopneumoniae J hypothetical protein YP_278812.1 7289 D 262719 CDS YP_278813.1 71893367 3563651 8023..9024 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0552; cell division protein ftsY 9024 ftsY 3563651 ftsY Mycoplasma hyopneumoniae J cell division protein ftsY YP_278813.1 8023 D 262719 CDS YP_278814.1 71893368 3563652 9190..11214 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; GeneMark; Blastx; COG0595; hypothetical protein 11214 3563652 MHJ_0009 Mycoplasma hyopneumoniae J hypothetical protein YP_278814.1 9190 D 262719 CDS YP_278815.1 71893369 3563653 11299..12306 1 NC_007295.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 12306 hrcA 3563653 hrcA Mycoplasma hyopneumoniae J heat-inducible transcription repressor YP_278815.1 11299 D 262719 CDS YP_278816.1 71893370 3563654 12303..13055 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0576; heat shock protein 13055 grpE 3563654 grpE Mycoplasma hyopneumoniae J heat shock protein YP_278816.1 12303 D 262719 CDS YP_278817.1 71893371 3563655 13039..14643 1 NC_007295.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 14643 argS 3563655 argS Mycoplasma hyopneumoniae J arginyl-tRNA synthetase YP_278817.1 13039 D 262719 CDS YP_278818.1 71893372 3563656 14648..14893 1 NC_007295.1 hypothetical protein 14893 3563656 MHJ_0013 Mycoplasma hyopneumoniae J hypothetical protein YP_278818.1 14648 D 262719 CDS YP_278819.1 71893373 3563657 14966..15829 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; GeneMark; Blastx; COG0191; fructose-bisphosphate aldolase 15829 fba 3563657 fba Mycoplasma hyopneumoniae J fructose-bisphosphate aldolase YP_278819.1 14966 D 262719 CDS YP_278820.1 71893374 3563658 15836..16681 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0564; ribosomal large subunit pseudouridine synthase C 16681 rluC 3563658 rluC Mycoplasma hyopneumoniae J ribosomal large subunit pseudouridine synthase C YP_278820.1 15836 D 262719 CDS YP_278821.1 71893375 3563659 complement(16715..17026) 1 NC_007295.1 hypothetical protein 17026 3563659 MHJ_0016 Mycoplasma hyopneumoniae J hypothetical protein YP_278821.1 16715 R 262719 CDS YP_278822.1 71893376 3563684 complement(17416..17658) 1 NC_007295.1 hypothetical protein 17658 3563684 MHJ_0017 Mycoplasma hyopneumoniae J hypothetical protein YP_278822.1 17416 R 262719 CDS YP_278823.1 71893377 3563934 complement(17804..20071) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG1136; TC:3.A.1.123.3; ABC transporter ATP-binding protein 20071 3563934 MHJ_0018 Mycoplasma hyopneumoniae J ABC transporter ATP-binding protein YP_278823.1 17804 R 262719 CDS YP_278824.1 71893378 3563935 complement(20265..22505) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1136; TC:3.A.1.123.3; ABC transporter ATP-binding protein 22505 3563935 MHJ_0019 Mycoplasma hyopneumoniae J ABC transporter ATP-binding protein YP_278824.1 20265 R 262719 CDS YP_278825.1 71893379 3563936 complement(22579..24906) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1136; TC:3.A.1.123.4; ABC transporter ATP-binding protein 24906 3563936 MHJ_0020 Mycoplasma hyopneumoniae J ABC transporter ATP-binding protein YP_278825.1 22579 R 262719 CDS YP_278826.1 71893380 3563937 complement(24893..25570) 1 NC_007295.1 hypothetical protein 25570 3563937 MHJ_0021 Mycoplasma hyopneumoniae J hypothetical protein YP_278826.1 24893 R 262719 CDS YP_278827.1 71893381 3563938 26074..26514 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0681; signal peptidase I 26514 sipS 3563938 sipS Mycoplasma hyopneumoniae J signal peptidase I YP_278827.1 26074 D 262719 CDS YP_278828.1 71893382 3563939 26677..27009 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0721; Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit 27009 gatC 3563939 gatC Mycoplasma hyopneumoniae J Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit YP_278828.1 26677 D 262719 CDS YP_278829.1 71893383 3563940 26999..28321 1 NC_007295.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 28321 gatA 3563940 gatA Mycoplasma hyopneumoniae J amidase YP_278829.1 26999 D 262719 CDS YP_278830.1 71893384 3563941 28314..29714 1 NC_007295.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 29714 gatB 3563941 gatB Mycoplasma hyopneumoniae J aspartyl/glutamyl-tRNA amidotransferase subunit B YP_278830.1 28314 D 262719 CDS YP_278831.1 71893385 3563942 29945..30454 1 NC_007295.1 hypothetical protein 30454 3563942 MHJ_0026 Mycoplasma hyopneumoniae J hypothetical protein YP_278831.1 29945 D 262719 CDS YP_278832.1 71893386 3563542 complement(30571..31098) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0597; lipoprotein signal peptidase 31098 lsp 3563542 lsp Mycoplasma hyopneumoniae J lipoprotein signal peptidase YP_278832.1 30571 R 262719 CDS YP_278833.1 71893387 3563614 complement(31142..33805) 1 NC_007295.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 33805 ileS 3563614 ileS Mycoplasma hyopneumoniae J isoleucyl-tRNA synthetase YP_278833.1 31142 R 262719 CDS YP_278834.1 71893388 3563615 complement(33802..36342) 1 NC_007295.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 36342 parC 3563615 parC Mycoplasma hyopneumoniae J DNA topoisomerase IV subunit A YP_278834.1 33802 R 262719 CDS YP_278835.1 71893389 3563616 complement(36335..38263) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0187; topoisomerase IV subunit B 38263 parE 3563616 parE Mycoplasma hyopneumoniae J topoisomerase IV subunit B YP_278835.1 36335 R 262719 CDS YP_278836.1 71893390 3563617 38473..39483 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0057; glyceraldehyde 3-phosphate dehydrogenase 39483 gap 3563617 gap Mycoplasma hyopneumoniae J glyceraldehyde 3-phosphate dehydrogenase YP_278836.1 38473 D 262719 CDS YP_278837.1 71893391 3563618 39582..41576 1 NC_007295.1 hypothetical protein 41576 3563618 MHJ_0032 Mycoplasma hyopneumoniae J hypothetical protein YP_278837.1 39582 D 262719 CDS YP_278838.1 71893392 3563619 complement(41677..43755) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0557; VACB-like ribonuclease II 43755 vacB 3563619 vacB Mycoplasma hyopneumoniae J VACB-like ribonuclease II YP_278838.1 41677 R 262719 CDS YP_278839.1 71893393 3563620 complement(44054..45592) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1502; cardiolipin synthetase 45592 cls 3563620 cls Mycoplasma hyopneumoniae J cardiolipin synthetase YP_278839.1 44054 R 262719 CDS YP_278840.1 71893394 3563621 complement(45597..46586) 1 NC_007295.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 46586 recA 3563621 recA Mycoplasma hyopneumoniae J recombinase A YP_278840.1 45597 R 262719 CDS YP_278841.1 71893395 3563543 46817..47572 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0510; PTS system lichenan-specific transporter subunit IIA 47572 licA 3563543 licA Mycoplasma hyopneumoniae J PTS system lichenan-specific transporter subunit IIA YP_278841.1 46817 D 262719 CDS YP_278842.1 71893396 3563751 47574..48833 1 NC_007295.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 48833 obgE 3563751 obgE Mycoplasma hyopneumoniae J GTPase ObgE YP_278842.1 47574 D 262719 CDS YP_278843.1 71893397 3563622 48936..49289 1 NC_007295.1 hypothetical protein 49289 3563622 MHJ_0038 Mycoplasma hyopneumoniae J hypothetical protein YP_278843.1 48936 D 262719 CDS YP_278844.1 71893398 3563623 49293..50501 1 NC_007295.1 hypothetical protein 50501 3563623 MHJ_0039 Mycoplasma hyopneumoniae J hypothetical protein YP_278844.1 49293 D 262719 CDS YP_278845.1 71893399 3563624 50503..50928 1 NC_007295.1 hypothetical protein 50928 3563624 MHJ_0040 Mycoplasma hyopneumoniae J hypothetical protein YP_278845.1 50503 D 262719 CDS YP_278846.1 71893400 3563625 50955..52130 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0389; DNA polymerase IV 52130 dinP 3563625 dinP Mycoplasma hyopneumoniae J DNA polymerase IV YP_278846.1 50955 D 262719 CDS YP_278847.1 71893401 3563626 52135..52566 1 NC_007295.1 hypothetical protein 52566 3563626 MHJ_0042 Mycoplasma hyopneumoniae J hypothetical protein YP_278847.1 52135 D 262719 CDS YP_278848.1 71893402 3563627 52563..53294 1 NC_007295.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 53294 atpB 3563627 atpB Mycoplasma hyopneumoniae J ATP synthase F0F1 subunit A YP_278848.1 52563 D 262719 CDS YP_278849.1 71893403 3563628 53322..53627 1 NC_007295.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C 53627 atpE 3563628 atpE Mycoplasma hyopneumoniae J ATP synthase F0F1 subunit C YP_278849.1 53322 D 262719 CDS YP_278850.1 71893404 3563629 53657..54247 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0711; ATP synthase subunit B 54247 atpF 3563629 atpF Mycoplasma hyopneumoniae J ATP synthase subunit B YP_278850.1 53657 D 262719 CDS YP_278851.1 71893405 3563759 54253..54810 1 NC_007295.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta 54810 atpH 3563759 atpH Mycoplasma hyopneumoniae J ATP synthase F0F1 subunit delta YP_278851.1 54253 D 262719 CDS YP_278852.1 71893406 3563760 54826..56352 1 NC_007295.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 56352 atpA-1 3563760 atpA-1 Mycoplasma hyopneumoniae J ATP synthase F0F1 subunit alpha YP_278852.1 54826 D 262719 CDS YP_278853.1 71893407 3563761 56381..57211 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0224; ATP synthase subunit gamma 57211 atpG 3563761 atpG Mycoplasma hyopneumoniae J ATP synthase subunit gamma YP_278853.1 56381 D 262719 CDS YP_278854.1 71893408 3563762 57229..58644 1 NC_007295.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 58644 atpD 3563762 atpD Mycoplasma hyopneumoniae J ATP synthase F0F1 subunit beta YP_278854.1 57229 D 262719 CDS YP_278855.1 71893409 3563763 59000..59485 1 NC_007295.1 functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC; Holliday junction-specific endonuclease 59485 recU 3563763 recU Mycoplasma hyopneumoniae J Holliday junction-specific endonuclease YP_278855.1 59000 D 262719 CDS YP_278856.1 71893410 3563764 59762..60664 1 NC_007295.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 60664 rpsB 3563764 rpsB Mycoplasma hyopneumoniae J 30S ribosomal protein S2 YP_278856.1 59762 D 262719 CDS YP_278857.1 71893411 3563765 60695..61606 1 NC_007295.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 61606 tsf 3563765 tsf Mycoplasma hyopneumoniae J elongation factor Ts YP_278857.1 60695 D 262719 CDS YP_278858.1 71893412 3563766 61691..63013 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0541; TC:3.A.5.1.1; signal recognition particle protein 63013 ffh 3563766 ffh Mycoplasma hyopneumoniae J signal recognition particle protein YP_278858.1 61691 D 262719 CDS YP_278859.1 71893413 3563767 63038..64408 1 NC_007295.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 64408 glyS 3563767 glyS Mycoplasma hyopneumoniae J glycyl-tRNA synthetase YP_278859.1 63038 D 262719 CDS YP_278860.1 71893414 3563768 64401..66242 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0358; DNA primase 66242 dnaG 3563768 dnaG Mycoplasma hyopneumoniae J DNA primase YP_278860.1 64401 D 262719 CDS YP_278861.1 71893415 3563769 66824..68293 1 NC_007295.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase sigma factor 68293 rpoD 3563769 rpoD Mycoplasma hyopneumoniae J RNA polymerase sigma factor YP_278861.1 66824 D 262719 CDS YP_278862.1 71893416 3563770 68300..69073 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0327; hypothetical protein 69073 3563770 MHJ_0057 Mycoplasma hyopneumoniae J hypothetical protein YP_278862.1 68300 D 262719 CDS YP_278863.1 71893417 3563771 69067..69897 1 NC_007295.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 69897 nfo 3563771 nfo Mycoplasma hyopneumoniae J endonuclease IV YP_278863.1 69067 D 262719 CDS YP_278864.1 71893418 3563772 69913..71157 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0162; tyrosyl tRNA synthetase 71157 tyrS 3563772 tyrS Mycoplasma hyopneumoniae J tyrosyl tRNA synthetase YP_278864.1 69913 D 262719 CDS YP_278865.1 71893419 3563773 71564..75931 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1112; hypothetical protein 75931 3563773 MHJ_0060 Mycoplasma hyopneumoniae J hypothetical protein YP_278865.1 71564 D 262719 CDS YP_278866.1 71893420 3563774 76174..78882 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 78882 3563774 MHJ_0061 Mycoplasma hyopneumoniae J hypothetical protein YP_278866.1 76174 D 262719 CDS YP_278867.1 71893421 3563775 complement(78940..80457) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0322; excinuclease ABC subunit C 80457 uvrC 3563775 uvrC Mycoplasma hyopneumoniae J excinuclease ABC subunit C YP_278867.1 78940 R 262719 CDS YP_278868.1 71893422 3563776 81104..82906 1 NC_007295.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 82906 dnaK 3563776 dnaK Mycoplasma hyopneumoniae J molecular chaperone DnaK YP_278868.1 81104 D 262719 CDS YP_278869.1 71893423 3563777 83117..84241 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; GeneMark; Blastx; COG0484; molecular chaperone DnaJ 84241 dnaJ 3563777 dnaJ Mycoplasma hyopneumoniae J molecular chaperone DnaJ YP_278869.1 83117 D 262719 CDS YP_278870.1 71893424 3563747 84300..84989 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0283; cytidylate kinase 84989 cmk 3563747 cmk Mycoplasma hyopneumoniae J cytidylate kinase YP_278870.1 84300 D 262719 CDS YP_278871.1 71893425 3563482 85004..86308 1 NC_007295.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 86308 engA 3563482 engA Mycoplasma hyopneumoniae J GTP-binding protein EngA YP_278871.1 85004 D 262719 CDS YP_278872.1 71893426 3563483 86342..86632 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0776; nucleoid DNA-binding protein 86632 himA 3563483 himA Mycoplasma hyopneumoniae J nucleoid DNA-binding protein YP_278872.1 86342 D 262719 CDS YP_278873.1 71893427 3563484 86635..86865 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 86865 3563484 MHJ_0068 Mycoplasma hyopneumoniae J hypothetical protein YP_278873.1 86635 D 262719 CDS YP_278874.1 71893428 3563485 86866..88662 1 NC_007295.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 88662 lepA 3563485 lepA Mycoplasma hyopneumoniae J GTP-binding protein LepA YP_278874.1 86866 D 262719 CDS YP_278875.1 71893429 3563486 88724..89680 1 NC_007295.1 hypothetical protein 89680 3563486 MHJ_0070 Mycoplasma hyopneumoniae J hypothetical protein YP_278875.1 88724 D 262719 CDS YP_278876.1 71893430 3563487 complement(89995..92082) 1 NC_007295.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 92082 fusA 3563487 fusA Mycoplasma hyopneumoniae J elongation factor G YP_278876.1 89995 R 262719 CDS YP_278877.1 71893431 3563488 complement(92092..92562) 1 NC_007295.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 92562 rpsG 3563488 rpsG Mycoplasma hyopneumoniae J 30S ribosomal protein S7 YP_278877.1 92092 R 262719 CDS YP_278878.1 71893432 3563489 complement(92614..93033) 1 NC_007295.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 93033 rpsL 3563489 rpsL Mycoplasma hyopneumoniae J 30S ribosomal protein S12 YP_278878.1 92614 R 262719 CDS YP_278879.1 71893433 3563490 complement(93164..93544) 1 NC_007295.1 hypothetical protein 93544 3563490 MHJ_0074 Mycoplasma hyopneumoniae J hypothetical protein YP_278879.1 93164 R 262719 CDS YP_278880.1 71893434 3563491 complement(93548..94039) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 94039 3563491 MHJ_0075 Mycoplasma hyopneumoniae J hypothetical protein YP_278880.1 93548 R 262719 CDS YP_278881.1 71893435 3563492 complement(94051..94533) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 94533 3563492 MHJ_0076 Mycoplasma hyopneumoniae J hypothetical protein YP_278881.1 94051 R 262719 CDS YP_278882.1 71893436 3563493 94816..96162 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0531; TC:2.A.3.6.1; amino acid permease 96162 3563493 MHJ_0077 Mycoplasma hyopneumoniae J amino acid permease YP_278882.1 94816 D 262719 CDS YP_278883.1 71893437 3563494 96377..97759 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0446; TC:3.D.1.1.1; NADH oxidase 97759 nox 3563494 nox Mycoplasma hyopneumoniae J NADH oxidase YP_278883.1 96377 D 262719 CDS YP_278884.1 71893438 3563495 complement(97947..99230) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0213; thymidine phosphorylase 99230 deoA 3563495 deoA Mycoplasma hyopneumoniae J thymidine phosphorylase YP_278884.1 97947 R 262719 CDS YP_278885.1 71893439 3563496 complement(99235..99933) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0813; purine-nucleoside phosphorylase 99933 deoD 3563496 deoD Mycoplasma hyopneumoniae J purine-nucleoside phosphorylase YP_278885.1 99235 R 262719 CDS YP_278886.1 71893440 3563497 complement(100022..100492) 1 NC_007295.1 hypothetical protein 100492 3563497 MHJ_0081 Mycoplasma hyopneumoniae J hypothetical protein YP_278886.1 100022 R 262719 CDS YP_278887.2 161611224 3563498 complement(100649..103600) 1 NC_007295.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 103600 secA 3563498 secA Mycoplasma hyopneumoniae J preprotein translocase subunit SecA YP_278887.2 100649 R 262719 CDS YP_278888.1 71893442 3563868 104867..105685 1 NC_007295.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 105685 rbgA 3563868 rbgA Mycoplasma hyopneumoniae J ribosomal biogenesis GTPase YP_278888.1 104867 D 262719 CDS YP_278889.1 71893443 3563869 complement(105969..107405) 1 NC_007295.1 hypothetical protein 107405 3563869 MHJ_0084 Mycoplasma hyopneumoniae J hypothetical protein YP_278889.1 105969 R 262719 CDS YP_278890.1 71893444 3563870 complement(107443..109581) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG1404; subtilisin-like serine protease 109581 3563870 MHJ_0085 Mycoplasma hyopneumoniae J subtilisin-like serine protease YP_278890.1 107443 R 262719 CDS YP_278891.1 71893445 3563871 109801..110076 1 NC_007295.1 hypothetical protein 110076 3563871 MHJ_0086 Mycoplasma hyopneumoniae J hypothetical protein YP_278891.1 109801 D 262719 CDS YP_278892.1 71893446 3563686 110173..111066 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; hypothetical protein 111066 3563686 MHJ_0087 Mycoplasma hyopneumoniae J hypothetical protein YP_278892.1 110173 D 262719 CDS YP_278893.1 71893447 3563687 complement(111446..114259) 1 NC_007295.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 114259 uvrA 3563687 uvrA Mycoplasma hyopneumoniae J excinuclease ABC subunit A YP_278893.1 111446 R 262719 CDS YP_278894.1 71893448 3563688 complement(114282..116720) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0595; hypothetical protein 116720 3563688 MHJ_0089 Mycoplasma hyopneumoniae J hypothetical protein YP_278894.1 114282 R 262719 CDS YP_278895.1 71893449 3563849 complement(116928..117287) 1 NC_007295.1 hypothetical protein 117287 3563849 MHJ_0090 Mycoplasma hyopneumoniae J hypothetical protein YP_278895.1 116928 R 262719 CDS YP_278896.1 71893450 3563850 117398..118981 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG4487; hypothetical protein 118981 3563850 MHJ_0091 Mycoplasma hyopneumoniae J hypothetical protein YP_278896.1 117398 D 262719 CDS YP_278897.1 71893451 3563851 complement(119004..119591) 1 NC_007295.1 hypothetical protein 119591 3563851 MHJ_0092 Mycoplasma hyopneumoniae J hypothetical protein YP_278897.1 119004 R 262719 CDS YP_278898.1 71893452 3563852 119960..120454 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG2077; thiol peroxidase 120454 tpx 3563852 tpx Mycoplasma hyopneumoniae J thiol peroxidase YP_278898.1 119960 D 262719 CDS YP_278899.1 71893453 3563907 121028..121966 1 NC_007295.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 121966 lgt 3563907 lgt Mycoplasma hyopneumoniae J prolipoprotein diacylglyceryl transferase YP_278899.1 121028 D 262719 CDS YP_278900.1 71893454 3563863 122125..123042 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; GeneMark; Blastx; COG0492; thioredoxin reductase 123042 trxB 3563863 trxB Mycoplasma hyopneumoniae J thioredoxin reductase YP_278900.1 122125 D 262719 CDS YP_278901.1 71893455 3563392 123067..126501 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; outer membrane protein - P95 126501 3563392 MHJ_0096 Mycoplasma hyopneumoniae J outer membrane protein - P95 YP_278901.1 123067 D 262719 CDS YP_278902.1 71893456 3563431 126600..129440 1 NC_007295.1 hypothetical protein 129440 3563431 MHJ_0097 Mycoplasma hyopneumoniae J hypothetical protein YP_278902.1 126600 D 262719 CDS YP_278903.1 71893457 3563432 complement(129445..131628) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0542; ATP-dependent protease binding protein 131628 clpB 3563432 clpB Mycoplasma hyopneumoniae J ATP-dependent protease binding protein YP_278903.1 129445 R 262719 CDS YP_278904.1 71893458 3563433 131706..132434 1 NC_007295.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 132434 tpiA 3563433 tpiA Mycoplasma hyopneumoniae J triosephosphate isomerase YP_278904.1 131706 D 262719 CDS YP_278905.1 71893459 3563434 132553..132819 1 NC_007295.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 132819 rpsO 3563434 rpsO Mycoplasma hyopneumoniae J 30S ribosomal protein S15 YP_278905.1 132553 D 262719 CDS YP_278906.1 71893460 3563437 complement(136543..137142) 1 NC_007295.1 hypothetical protein 137142 3563437 MHJ_0103 Mycoplasma hyopneumoniae J hypothetical protein YP_278906.1 136543 R 262719 CDS YP_278907.1 71893461 3563438 complement(137369..140218) 1 NC_007295.1 copy 2; identified by sequence similarity; ORF located using Blastx; protein P102 140218 3563438 MHJ_0104 Mycoplasma hyopneumoniae J protein P102 YP_278907.1 137369 R 262719 CDS YP_278908.1 71893462 3563439 complement(140239..143355) 1 NC_007295.1 copy 2; identified by sequence similarity; ORF located using Blastx; protein P97 143355 3563439 MHJ_0105 Mycoplasma hyopneumoniae J protein P97 YP_278908.1 140239 R 262719 CDS YP_278909.1 71893463 3563440 complement(143633..145552) 1 NC_007295.1 identified by sequence similarity; ORF located using GeneMark; Blastx; COG0187; DNA gyrase subunit B 145552 gyrB 3563440 gyrB Mycoplasma hyopneumoniae J DNA gyrase subunit B YP_278909.1 143633 R 262719 CDS YP_278910.1 71893464 3563441 complement(146026..146994) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0205; 6-phosphofructokinase 146994 pfkA 3563441 pfkA Mycoplasma hyopneumoniae J 6-phosphofructokinase YP_278910.1 146026 R 262719 CDS YP_278911.1 71893465 3563442 147439..148662 1 NC_007295.1 hypothetical protein 148662 3563442 MHJ_0108 Mycoplasma hyopneumoniae J hypothetical protein YP_278911.1 147439 D 262719 CDS YP_278912.1 71893466 3563443 148726..150336 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0531; TC:2.A.3.8.7; amino acid permease 150336 3563443 MHJ_0109 Mycoplasma hyopneumoniae J amino acid permease YP_278912.1 148726 D 262719 CDS YP_278913.1 71893467 3563444 150355..150864 1 NC_007295.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 150864 apt 3563444 apt Mycoplasma hyopneumoniae J adenine phosphoribosyltransferase YP_278913.1 150355 D 262719 CDS YP_278914.1 71893468 3563592 151054..152178 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; GeneMark; Blastx; COG1071; pyruvate dehydrogenase E1-alpha subunit 152178 pdhA 3563592 pdhA Mycoplasma hyopneumoniae J pyruvate dehydrogenase E1-alpha subunit YP_278914.1 151054 D 262719 CDS YP_278915.1 71893469 3563593 152178..153182 1 NC_007295.1 identified by sequence similarity; ORF located using GeneMark; Blastx; COG0022; pyruvate dehydrogenase 153182 pdhB 3563593 pdhB Mycoplasma hyopneumoniae J pyruvate dehydrogenase YP_278915.1 152178 D 262719 CDS YP_278916.1 71893470 3563594 154016..154843 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; hypothetical protein 154843 3563594 MHJ_0113 Mycoplasma hyopneumoniae J hypothetical protein YP_278916.1 154016 D 262719 CDS YP_278917.1 71893471 3563595 154852..155601 1 NC_007295.1 hypothetical protein 155601 3563595 MHJ_0114 Mycoplasma hyopneumoniae J hypothetical protein YP_278917.1 154852 D 262719 CDS YP_278918.1 71893472 3563596 complement(155691..156134) 1 NC_007295.1 hypothetical protein 156134 3563596 MHJ_0115 Mycoplasma hyopneumoniae J hypothetical protein YP_278918.1 155691 R 262719 CDS YP_278919.1 71893473 3563597 156385..157257 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0542; hypothetical protein 157257 3563597 MHJ_0116 Mycoplasma hyopneumoniae J hypothetical protein YP_278919.1 156385 D 262719 CDS YP_278920.1 71893474 3563598 157262..157927 1 NC_007295.1 hypothetical protein 157927 3563598 MHJ_0117 Mycoplasma hyopneumoniae J hypothetical protein YP_278920.1 157262 D 262719 CDS YP_278921.1 71893475 3563599 complement(158092..158286) 1 NC_007295.1 required for 70S ribosome assembly; 50S ribosomal protein L28 158286 rpmB 3563599 rpmB Mycoplasma hyopneumoniae J 50S ribosomal protein L28 YP_278921.1 158092 R 262719 CDS YP_278922.1 71893476 3563600 complement(158342..158695) 1 NC_007295.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 158695 rplT 3563600 rplT Mycoplasma hyopneumoniae J 50S ribosomal protein L20 YP_278922.1 158342 R 262719 CDS YP_278923.2 161611223 3563601 complement(158740..158934) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0291; 50S ribosomal protein L35 158934 rpmI 3563601 rpmI Mycoplasma hyopneumoniae J 50S ribosomal protein L35 YP_278923.2 158740 R 262719 CDS YP_278924.1 71893478 3563602 complement(158927..159583) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0290; translation initiation factor IF-3 159583 infC 3563602 infC Mycoplasma hyopneumoniae J translation initiation factor IF-3 YP_278924.1 158927 R 262719 CDS YP_278925.1 71893479 3563603 complement(159810..161237) 1 NC_007295.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 161237 pyk 3563603 pyk Mycoplasma hyopneumoniae J pyruvate kinase YP_278925.1 159810 R 262719 CDS YP_278926.1 71893480 3563672 complement(161342..162145) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 162145 3563672 MHJ_0123 Mycoplasma hyopneumoniae J hypothetical protein YP_278926.1 161342 R 262719 CDS YP_278927.1 71893481 3563673 162190..162483 1 NC_007295.1 hypothetical protein 162483 3563673 MHJ_0124 Mycoplasma hyopneumoniae J hypothetical protein YP_278927.1 162190 D 262719 CDS YP_278928.1 71893482 3563674 complement(162512..163582) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1363; aminopeptidase 163582 3563674 MHJ_0125 Mycoplasma hyopneumoniae J aminopeptidase YP_278928.1 162512 R 262719 CDS YP_278929.1 71893483 3563675 complement(163634..164302) 1 NC_007295.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 164302 ung 3563675 ung Mycoplasma hyopneumoniae J uracil-DNA glycosylase YP_278929.1 163634 R 262719 CDS YP_278930.1 71893484 3563676 164443..164742 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0261; 50S ribosomal protein L21 164742 rplU 3563676 rplU Mycoplasma hyopneumoniae J 50S ribosomal protein L21 YP_278930.1 164443 D 262719 CDS YP_278931.1 71893485 3563677 164751..165005 1 NC_007295.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 165005 rpmA 3563677 rpmA Mycoplasma hyopneumoniae J 50S ribosomal protein L27 YP_278931.1 164751 D 262719 CDS YP_278932.1 71893486 3563678 complement(165262..166059) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0596; lipase/esterase 166059 lip2 3563678 lip2 Mycoplasma hyopneumoniae J lipase/esterase YP_278932.1 165262 R 262719 CDS YP_278933.1 71893487 3563576 166362..167441 1 NC_007295.1 hypothetical protein 167441 3563576 MHJ_0131 Mycoplasma hyopneumoniae J hypothetical protein YP_278933.1 166362 D 262719 CDS YP_278934.1 71893488 3563577 167674..169113 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0477; hexosephosphate transport protein 169113 3563577 MHJ_0132 Mycoplasma hyopneumoniae J hexosephosphate transport protein YP_278934.1 167674 D 262719 CDS YP_278935.1 71893489 3563578 169238..170185 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0039; L-lactate dehydrogenase 170185 ldh 3563578 ldh Mycoplasma hyopneumoniae J L-lactate dehydrogenase YP_278935.1 169238 D 262719 CDS YP_278936.1 71893490 3563579 170434..173385 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 173385 3563579 MHJ_0134 Mycoplasma hyopneumoniae J hypothetical protein YP_278936.1 170434 D 262719 CDS YP_278937.1 71893491 3563580 173453..174538 1 NC_007295.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 174538 prfA 3563580 prfA Mycoplasma hyopneumoniae J peptide chain release factor 1 YP_278937.1 173453 D 262719 CDS YP_278938.1 71893492 3563581 174531..175241 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG2890; protoporphirogen oxidase 175241 hemK 3563581 hemK Mycoplasma hyopneumoniae J protoporphirogen oxidase YP_278938.1 174531 D 262719 CDS YP_278939.1 71893493 3563582 175299..176705 1 NC_007295.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 176705 gltX 3563582 gltX Mycoplasma hyopneumoniae J glutamyl-tRNA synthetase YP_278939.1 175299 D 262719 CDS YP_278940.1 71893494 3563583 176720..177115 1 NC_007295.1 hypothetical protein 177115 3563583 MHJ_0138 Mycoplasma hyopneumoniae J hypothetical protein YP_278940.1 176720 D 262719 CDS YP_278941.1 71893495 3563584 177192..177632 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0219; tRNA/rRNA methyltransferase 177632 3563584 MHJ_0139 Mycoplasma hyopneumoniae J tRNA/rRNA methyltransferase YP_278941.1 177192 D 262719 CDS YP_278942.1 71893496 3563585 177628..178377 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0566; tRNA/rRNA methyltransferase 178377 3563585 MHJ_0140 Mycoplasma hyopneumoniae J tRNA/rRNA methyltransferase YP_278942.1 177628 D 262719 CDS YP_278943.1 71893497 3563586 178523..179122 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG2059; TC:2.A.51.1.2; chromate transport protein 179122 3563586 MHJ_0141 Mycoplasma hyopneumoniae J chromate transport protein YP_278943.1 178523 D 262719 CDS YP_278944.1 71893498 3563587 179106..179756 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG2059; chromate transport protein 179756 3563587 MHJ_0142 Mycoplasma hyopneumoniae J chromate transport protein YP_278944.1 179106 D 262719 CDS YP_278945.1 71893499 3563588 179766..180578 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; hypothetical protein 180578 3563588 MHJ_0143 Mycoplasma hyopneumoniae J hypothetical protein YP_278945.1 179766 D 262719 CDS YP_278946.1 71893500 3563589 180594..181829 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1281; hypothetical protein 181829 3563589 MHJ_0144 Mycoplasma hyopneumoniae J hypothetical protein YP_278946.1 180594 D 262719 CDS YP_278947.1 71893501 3563590 182043..183422 1 NC_007295.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 183422 tig 3563590 tig Mycoplasma hyopneumoniae J trigger factor YP_278947.1 182043 D 262719 CDS YP_278948.1 71893502 3563591 complement(183472..183990) 1 NC_007295.1 hypothetical protein 183990 3563591 MHJ_0146 Mycoplasma hyopneumoniae J hypothetical protein YP_278948.1 183472 R 262719 CDS YP_278949.1 71893503 3563928 complement(184003..184641) 1 NC_007295.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 184641 rpe 3563928 rpe Mycoplasma hyopneumoniae J ribulose-phosphate 3-epimerase YP_278949.1 184003 R 262719 CDS YP_278950.1 71893504 3563929 complement(184634..185491) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG1162; hypothetical protein 185491 3563929 MHJ_0148 Mycoplasma hyopneumoniae J hypothetical protein YP_278950.1 184634 R 262719 CDS YP_278951.1 71893505 3563930 complement(185492..186085) 1 NC_007295.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 186085 gmk 3563930 gmk Mycoplasma hyopneumoniae J guanylate kinase YP_278951.1 185492 R 262719 CDS YP_278952.1 71893506 3563931 complement(186066..186626) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0742; DNA methylase 186626 3563931 MHJ_0150 Mycoplasma hyopneumoniae J DNA methylase YP_278952.1 186066 R 262719 CDS YP_278953.1 71893507 3563932 complement(186653..187333) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; hypothetical protein 187333 3563932 MHJ_0151 Mycoplasma hyopneumoniae J hypothetical protein YP_278953.1 186653 R 262719 CDS YP_278954.1 71893508 3563933 complement(187813..188694) 1 NC_007295.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 188694 era 3563933 era Mycoplasma hyopneumoniae J GTP-binding protein Era YP_278954.1 187813 R 262719 CDS YP_278955.1 71893509 3563667 complement(188701..189096) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0295; cytidine deaminase 189096 cdd 3563667 cdd Mycoplasma hyopneumoniae J cytidine deaminase YP_278955.1 188701 R 262719 CDS YP_278956.1 71893510 3563668 complement(189096..189548) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0319; hypothetical protein 189548 3563668 MHJ_0154 Mycoplasma hyopneumoniae J hypothetical protein YP_278956.1 189096 R 262719 CDS YP_278957.1 71893511 3563669 complement(189566..189919) 1 NC_007295.1 hypothetical protein 189919 3563669 MHJ_0155 Mycoplasma hyopneumoniae J hypothetical protein YP_278957.1 189566 R 262719 CDS YP_278958.1 71893512 3563685 complement(189921..191960) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG2274; TC:3.A.1.112.4; ABC transporter ATP-binding and permease 191960 3563685 MHJ_0156 Mycoplasma hyopneumoniae J ABC transporter ATP-binding and permease YP_278958.1 189921 R 262719 CDS YP_278959.1 71893513 3563917 192038..193234 1 NC_007295.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 193234 deoB 3563917 deoB Mycoplasma hyopneumoniae J phosphopentomutase YP_278959.1 192038 D 262719 CDS YP_278960.1 71893514 3563918 193562..194161 1 NC_007295.1 hypothetical protein 194161 3563918 MHJ_0158 Mycoplasma hyopneumoniae J hypothetical protein YP_278960.1 193562 D 262719 CDS YP_278961.1 71893515 3563919 194595..195308 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG1189; haemolysin 195308 tlyA 3563919 tlyA Mycoplasma hyopneumoniae J haemolysin YP_278961.1 194595 D 262719 CDS YP_278962.1 71893516 3563604 195301..196446 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0520; nitrogen fixation protein 196446 nifS 3563604 nifS Mycoplasma hyopneumoniae J nitrogen fixation protein YP_278962.1 195301 D 262719 CDS YP_278963.1 71893517 3563605 196436..196867 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0822; hypothetical protein 196867 3563605 MHJ_0161 Mycoplasma hyopneumoniae J hypothetical protein YP_278963.1 196436 D 262719 CDS YP_278964.1 71893518 3563606 196857..197570 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1187; ribosomal large subunit pseudouridine synthase B 197570 rluB 3563606 rluB Mycoplasma hyopneumoniae J ribosomal large subunit pseudouridine synthase B YP_278964.1 196857 D 262719 CDS YP_278965.1 71893519 3563607 complement(197779..198141) 1 NC_007295.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 198141 rplQ 3563607 rplQ Mycoplasma hyopneumoniae J 50S ribosomal protein L17 YP_278965.1 197779 R 262719 CDS YP_278966.1 71893520 3563670 complement(198144..199142) 1 NC_007295.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 199142 rpoA 3563670 rpoA Mycoplasma hyopneumoniae J DNA-directed RNA polymerase subunit alpha YP_278966.1 198144 R 262719 CDS YP_278967.1 71893521 3563671 complement(199149..199553) 1 NC_007295.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 199553 rpsK 3563671 rpsK Mycoplasma hyopneumoniae J 30S ribosomal protein S11 YP_278967.1 199149 R 262719 CDS YP_278968.1 71893522 3563608 complement(199556..199969) 1 NC_007295.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 199969 rpsM 3563608 rpsM Mycoplasma hyopneumoniae J 30S ribosomal protein S13 YP_278968.1 199556 R 262719 CDS YP_278969.1 71893523 3563664 complement(200115..200228) 1 NC_007295.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 200228 rpmJ 3563664 rpmJ Mycoplasma hyopneumoniae J 50S ribosomal protein L36 YP_278969.1 200115 R 262719 CDS YP_278970.1 71893524 3563278 complement(200273..200491) 1 NC_007295.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 200491 infA 3563278 infA Mycoplasma hyopneumoniae J translation initiation factor IF-1 YP_278970.1 200273 R 262719 CDS YP_278971.1 71893525 3563279 complement(200501..201253) 1 NC_007295.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 201253 map 3563279 map Mycoplasma hyopneumoniae J methionine aminopeptidase YP_278971.1 200501 R 262719 CDS YP_278972.1 71893526 3563280 complement(201244..201882) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0563; adenylate kinase 201882 adk 3563280 adk Mycoplasma hyopneumoniae J adenylate kinase YP_278972.1 201244 R 262719 CDS YP_278973.1 71893527 3563281 complement(201928..203349) 1 NC_007295.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 203349 secY 3563281 secY Mycoplasma hyopneumoniae J preprotein translocase subunit SecY YP_278973.1 201928 R 262719 CDS YP_278974.1 71893528 3563282 complement(203349..203786) 1 NC_007295.1 late assembly protein; 50S ribosomal protein L15 203786 rplO 3563282 rplO Mycoplasma hyopneumoniae J 50S ribosomal protein L15 YP_278974.1 203349 R 262719 CDS YP_278975.1 71893529 3563283 complement(203905..204555) 1 NC_007295.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 204555 rpsE 3563283 rpsE Mycoplasma hyopneumoniae J 30S ribosomal protein S5 YP_278975.1 203905 R 262719 CDS YP_278976.1 71893530 3563284 complement(204557..204925) 1 NC_007295.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 204925 rplR 3563284 rplR Mycoplasma hyopneumoniae J 50S ribosomal protein L18 YP_278976.1 204557 R 262719 CDS YP_278977.1 71893531 3563285 complement(204925..205464) 1 NC_007295.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 205464 rplF 3563285 rplF Mycoplasma hyopneumoniae J 50S ribosomal protein L6 YP_278977.1 204925 R 262719 CDS YP_278978.1 71893532 3563286 complement(205471..205866) 1 NC_007295.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 205866 rpsH 3563286 rpsH Mycoplasma hyopneumoniae J 30S ribosomal protein S8 YP_278978.1 205471 R 262719 CDS YP_278979.1 71893533 3563665 complement(205872..206057) 1 NC_007295.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 206057 rpsN 3563665 rpsN Mycoplasma hyopneumoniae J 30S ribosomal protein S14 YP_278979.1 205872 R 262719 CDS YP_278980.1 71893534 3563666 complement(206104..206646) 1 NC_007295.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 206646 rplE 3563666 rplE Mycoplasma hyopneumoniae J 50S ribosomal protein L5 YP_278980.1 206104 R 262719 CDS YP_278981.1 71893535 3563921 complement(206653..206976) 1 NC_007295.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 206976 rplX 3563921 rplX Mycoplasma hyopneumoniae J 50S ribosomal protein L24 YP_278981.1 206653 R 262719 CDS YP_278982.1 71893536 3563922 complement(206981..207349) 1 NC_007295.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 207349 rplN 3563922 rplN Mycoplasma hyopneumoniae J 50S ribosomal protein L14 YP_278982.1 206981 R 262719 CDS YP_278983.1 71893537 3563923 complement(207351..207623) 1 NC_007295.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 207623 rpsQ 3563923 rpsQ Mycoplasma hyopneumoniae J 30S ribosomal protein S17 YP_278983.1 207351 R 262719 CDS YP_278984.1 71893538 3563924 complement(207631..207999) 1 NC_007295.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 207999 rpmC 3563924 rpmC Mycoplasma hyopneumoniae J 50S ribosomal protein L29 YP_278984.1 207631 R 262719 CDS YP_278985.1 71893539 3563925 complement(208004..208414) 1 NC_007295.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 208414 rplP 3563925 rplP Mycoplasma hyopneumoniae J 50S ribosomal protein L16 YP_278985.1 208004 R 262719 CDS YP_278986.2 161611222 3563926 complement(208417..209100) 1 NC_007295.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 209100 rpsC 3563926 rpsC Mycoplasma hyopneumoniae J 30S ribosomal protein S3 YP_278986.2 208417 R 262719 CDS YP_278987.1 71893541 3563927 complement(209100..209690) 1 NC_007295.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 209690 rplV 3563927 rplV Mycoplasma hyopneumoniae J 50S ribosomal protein L22 YP_278987.1 209100 R 262719 CDS YP_278988.1 71893542 3563822 complement(209725..209997) 1 NC_007295.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 209997 rpsS 3563822 rpsS Mycoplasma hyopneumoniae J 30S ribosomal protein S19 YP_278988.1 209725 R 262719 CDS YP_278989.1 71893543 3563823 complement(209997..210845) 1 NC_007295.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 210845 rplB 3563823 rplB Mycoplasma hyopneumoniae J 50S ribosomal protein L2 YP_278989.1 209997 R 262719 CDS YP_278990.1 71893544 3563824 complement(210968..211471) 1 NC_007295.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 211471 rplW 3563824 rplW Mycoplasma hyopneumoniae J 50S ribosomal protein L23 YP_278990.1 210968 R 262719 CDS YP_278991.1 71893545 3563825 complement(211475..212095) 1 NC_007295.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 212095 rplD 3563825 rplD Mycoplasma hyopneumoniae J 50S ribosomal protein L4 YP_278991.1 211475 R 262719 CDS YP_278992.1 71893546 3563826 complement(212112..212804) 1 NC_007295.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 212804 rplC 3563826 rplC Mycoplasma hyopneumoniae J 50S ribosomal protein L3 YP_278992.1 212112 R 262719 CDS YP_278993.1 71893547 3563827 complement(212806..213177) 1 NC_007295.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 213177 rpsJ 3563827 rpsJ Mycoplasma hyopneumoniae J 30S ribosomal protein S10 YP_278993.1 212806 R 262719 CDS YP_278995.1 71893549 3563829 213712..214140 1 NC_007295.1 hypothetical protein 214140 3563829 MHJ_0193 Mycoplasma hyopneumoniae J hypothetical protein YP_278995.1 213712 D 262719 CDS YP_278996.1 71893550 3563830 214552..217830 1 NC_007295.1 copy 1; identified by sequence similarity; ORF located using Blastx; protein P97 217830 3563830 MHJ_0194 Mycoplasma hyopneumoniae J protein P97 YP_278996.1 214552 D 262719 CDS YP_278997.1 71893551 3563831 217851..220565 1 NC_007295.1 copy 1; identified by sequence similarity; ORF located using Blastx; protein P102 220565 3563831 MHJ_0195 Mycoplasma hyopneumoniae J protein P102 YP_278997.1 217851 D 262719 CDS YP_278998.1 71893552 3563832 complement(220882..221565) 1 NC_007295.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 221565 3563832 MHJ_0196 Mycoplasma hyopneumoniae J 16S ribosomal RNA methyltransferase RsmE YP_278998.1 220882 R 262719 CDS YP_278999.1 71893553 3563833 221649..224291 1 NC_007295.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 224291 alaS 3563833 alaS Mycoplasma hyopneumoniae J alanyl-tRNA synthetase YP_278999.1 221649 D 262719 CDS YP_279000.1 71893554 3563834 224306..224698 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0816; hypothetical protein 224698 3563834 MHJ_0198 Mycoplasma hyopneumoniae J hypothetical protein YP_279000.1 224306 D 262719 CDS YP_279001.1 71893555 3563835 224704..225132 1 NC_007295.1 hypothetical protein 225132 3563835 MHJ_0199 Mycoplasma hyopneumoniae J hypothetical protein YP_279001.1 224704 D 262719 CDS YP_279002.1 71893556 3563836 225166..225720 1 NC_007295.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 225720 pth 3563836 pth Mycoplasma hyopneumoniae J peptidyl-tRNA hydrolase YP_279002.1 225166 D 262719 CDS YP_279003.1 71893557 3563837 225731..226591 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0037; hypothetical protein 226591 3563837 MHJ_0201 Mycoplasma hyopneumoniae J hypothetical protein YP_279003.1 225731 D 262719 CDS YP_279004.1 71893558 3563838 226628..228778 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0465; cell division protein 228778 ftsH 3563838 ftsH Mycoplasma hyopneumoniae J cell division protein YP_279004.1 226628 D 262719 CDS YP_279005.1 71893559 3563839 228897..230366 1 NC_007295.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 230366 lysS 3563839 lysS Mycoplasma hyopneumoniae J lysyl-tRNA synthetase YP_279005.1 228897 D 262719 CDS YP_279006.1 71893560 3563840 230368..231198 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; GeneMark; Blastx; COG0561; HAD family hydrolase 231198 3563840 MHJ_0204 Mycoplasma hyopneumoniae J HAD family hydrolase YP_279006.1 230368 D 262719 CDS YP_279007.1 71893561 3563841 complement(231187..232515) 1 NC_007295.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 232515 trmE 3563841 trmE Mycoplasma hyopneumoniae J tRNA modification GTPase TrmE YP_279007.1 231187 R 262719 CDS YP_279008.1 71893562 3563803 complement(232559..234175) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0488; ABC transporter ATP-binding protein 234175 3563803 MHJ_0206 Mycoplasma hyopneumoniae J ABC transporter ATP-binding protein YP_279008.1 232559 R 262719 CDS YP_279009.1 71893563 3563804 234333..235397 1 NC_007295.1 hypothetical protein 235397 3563804 MHJ_0207 Mycoplasma hyopneumoniae J hypothetical protein YP_279009.1 234333 D 262719 CDS YP_279010.1 71893564 3563805 235856..236956 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0601; oligopeptide ABC transporter system permease 236956 oppB-1 3563805 oppB-1 Mycoplasma hyopneumoniae J oligopeptide ABC transporter system permease YP_279010.1 235856 D 262719 CDS YP_279011.1 71893565 3563806 236974..237921 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1173; TC:3.A.1.5.2; oligopeptide transport system permease 237921 oppC-1 3563806 oppC-1 Mycoplasma hyopneumoniae J oligopeptide transport system permease YP_279011.1 236974 D 262719 CDS YP_279012.1 71893566 3563807 238007..239335 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0444; TC:3.A.1.5.2; oligopeptide ABC transporter ATP-binding protein 239335 oppD-1 3563807 oppD-1 Mycoplasma hyopneumoniae J oligopeptide ABC transporter ATP-binding protein YP_279012.1 238007 D 262719 CDS YP_279013.1 71893567 3563808 239511..240656 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; oligopeptide ABC transporter ATP-binding protein 240656 oppF-1 3563808 oppF-1 Mycoplasma hyopneumoniae J oligopeptide ABC transporter ATP-binding protein YP_279013.1 239511 D 262719 CDS YP_279014.1 71893568 3563809 240658..246786 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 246786 3563809 MHJ_0212 Mycoplasma hyopneumoniae J hypothetical protein YP_279014.1 240658 D 262719 CDS YP_279015.1 71893569 3563810 246806..249475 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG4166; lipoprotein 249475 3563810 MHJ_0213 Mycoplasma hyopneumoniae J lipoprotein YP_279015.1 246806 D 262719 CDS YP_279016.1 71893570 3563811 complement(249566..250330) 1 NC_007295.1 hypothetical protein 250330 3563811 MHJ_0214 Mycoplasma hyopneumoniae J hypothetical protein YP_279016.1 249566 R 262719 CDS YP_279017.1 71893571 3563812 complement(251268..253409) 1 NC_007295.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 253409 nrdE 3563812 nrdE Mycoplasma hyopneumoniae J ribonucleotide-diphosphate reductase subunit alpha YP_279017.1 251268 R 262719 CDS YP_279018.1 71893572 3563813 complement(253486..253938) 1 NC_007295.1 in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 253938 nrdI 3563813 nrdI Mycoplasma hyopneumoniae J ribonucleotide reductase stimulatory protein YP_279018.1 253486 R 262719 CDS YP_279019.1 71893573 3563814 complement(253940..254959) 1 NC_007295.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 254959 nrdF 3563814 nrdF Mycoplasma hyopneumoniae J ribonucleotide-diphosphate reductase subunit beta YP_279019.1 253940 R 262719 CDS YP_279020.1 71893574 3563815 complement(255658..256914) 1 NC_007295.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 256914 glyA 3563815 glyA Mycoplasma hyopneumoniae J serine hydroxymethyltransferase YP_279020.1 255658 R 262719 CDS YP_279021.1 71893575 3563816 257420..258889 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1012; methylmalonate-semialdehyde dehydrogenase 258889 3563816 MHJ_0219 Mycoplasma hyopneumoniae J methylmalonate-semialdehyde dehydrogenase YP_279021.1 257420 D 262719 CDS YP_279022.1 71893576 3563817 258889..259905 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0524; myo-inositol catabolism protein 259905 iolC 3563817 iolC Mycoplasma hyopneumoniae J myo-inositol catabolism protein YP_279022.1 258889 D 262719 CDS YP_279023.1 71893577 3563818 259910..260695 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG3718; myo-inositol catabolism protein 260695 iolB 3563818 iolB Mycoplasma hyopneumoniae J myo-inositol catabolism protein YP_279023.1 259910 D 262719 CDS YP_279024.1 71893578 3563819 260703..261704 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0673; myo-inositol 2-dehydrogenase 261704 3563819 MHJ_0222 Mycoplasma hyopneumoniae J myo-inositol 2-dehydrogenase YP_279024.1 260703 D 262719 CDS YP_279025.1 71893579 3563820 261704..263674 1 NC_007295.1 identified by sequence similarity; ORF located using GeneMark; Blastx; COG3962; myo-inositol catabolism protein 263674 iolD 3563820 iolD Mycoplasma hyopneumoniae J myo-inositol catabolism protein YP_279025.1 261704 D 262719 CDS YP_279026.1 71893580 3563821 263683..264576 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1082; myo-inositol catabolism protein 264576 iolE 3563821 iolE Mycoplasma hyopneumoniae J myo-inositol catabolism protein YP_279026.1 263683 D 262719 CDS YP_279027.1 71893581 3563630 264612..266117 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1129; ribose ABC transport ATP-binding protein 266117 mglA 3563630 mglA Mycoplasma hyopneumoniae J ribose ABC transport ATP-binding protein YP_279027.1 264612 D 262719 CDS YP_279028.1 71893582 3563631 266952..267944 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1172; TC:3.A.1.2.1; ribose ABC transporter 267944 3563631 MHJ_0226 Mycoplasma hyopneumoniae J ribose ABC transporter YP_279028.1 266952 D 262719 CDS YP_279029.1 71893583 3563632 267967..269172 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; GeneMark; Blastx; COG1879; TC:3.A.2.1.2; periplasmic sugar-binding proteins 269172 rbsB 3563632 rbsB Mycoplasma hyopneumoniae J periplasmic sugar-binding proteins YP_279029.1 267967 D 262719 CDS YP_279030.1 71893584 3563633 269195..270238 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0673; TC:3.A.2.1.2; myo-inositol 2-dehydrogenase 270238 3563633 MHJ_0228 Mycoplasma hyopneumoniae J myo-inositol 2-dehydrogenase YP_279030.1 269195 D 262719 CDS YP_279031.1 71893585 3563634 complement(270349..271407) 1 NC_007295.1 hypothetical protein 271407 3563634 MHJ_0229 Mycoplasma hyopneumoniae J hypothetical protein YP_279031.1 270349 R 262719 CDS YP_279032.2 229220848 3563635 complement(271411..271845) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 271845 3563635 MHJ_0230 Mycoplasma hyopneumoniae J hypothetical protein YP_279032.2 271411 R 262719 CDS YP_279033.1 71893587 3563636 complement(272223..272771) 1 NC_007295.1 hypothetical protein 272771 3563636 MHJ_0231 Mycoplasma hyopneumoniae J hypothetical protein YP_279033.1 272223 R 262719 CDS YP_279034.1 71893588 3563637 complement(272782..273711) 1 NC_007295.1 hypothetical protein 273711 3563637 MHJ_0232 Mycoplasma hyopneumoniae J hypothetical protein YP_279034.1 272782 R 262719 CDS YP_279035.1 71893589 3563638 274230..276827 1 NC_007295.1 part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; bifunctional preprotein translocase subunit SecD/SecF 276827 secD 3563638 secD Mycoplasma hyopneumoniae J bifunctional preprotein translocase subunit SecD/SecF YP_279035.1 274230 D 262719 CDS YP_279036.1 71893590 3563639 276916..278202 1 NC_007295.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 278202 hisS 3563639 hisS Mycoplasma hyopneumoniae J histidyl-tRNA synthetase YP_279036.1 276916 D 262719 CDS YP_279037.1 71893591 3563640 278213..279898 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0173; aspartyl-tRNA synthetase 279898 aspS 3563640 aspS Mycoplasma hyopneumoniae J aspartyl-tRNA synthetase YP_279037.1 278213 D 262719 CDS YP_279038.1 71893592 3563641 279973..280428 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG2731; hypothetical protein 280428 3563641 MHJ_0236 Mycoplasma hyopneumoniae J hypothetical protein YP_279038.1 279973 D 262719 CDS YP_279039.1 71893593 3563642 280568..280840 1 NC_007295.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 280840 rpsT 3563642 rpsT Mycoplasma hyopneumoniae J 30S ribosomal protein S20 YP_279039.1 280568 D 262719 CDS YP_279040.1 71893594 3563643 complement(281004..284591) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; TC:1.C.57.1.2; hypothetical protein 284591 3563643 MHJ_0238 Mycoplasma hyopneumoniae J hypothetical protein YP_279040.1 281004 R 262719 CDS YP_279041.1 71893595 3563644 complement(284636..287272) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG3451; TRSE-like protein 287272 3563644 MHJ_0239 Mycoplasma hyopneumoniae J TRSE-like protein YP_279041.1 284636 R 262719 CDS YP_279042.1 71893596 3563645 complement(287311..289557) 1 NC_007295.1 hypothetical protein 289557 3563645 MHJ_0240 Mycoplasma hyopneumoniae J hypothetical protein YP_279042.1 287311 R 262719 CDS YP_279043.1 71893597 3563646 complement(289865..290644) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0758; DNA processing protein SMF 290644 smf 3563646 smf Mycoplasma hyopneumoniae J DNA processing protein SMF YP_279043.1 289865 R 262719 CDS YP_279044.1 71893598 3563647 290939..292294 1 NC_007295.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 292294 eno 3563647 eno Mycoplasma hyopneumoniae J phosphopyruvate hydratase YP_279044.1 290939 D 262719 CDS YP_279045.1 71893599 3563648 292303..293547 1 NC_007295.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 293547 serS 3563648 serS Mycoplasma hyopneumoniae J seryl-tRNA synthetase YP_279045.1 292303 D 262719 CDS YP_279046.1 71893600 3563649 293627..294196 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0693; hypothetical protein 294196 3563649 MHJ_0244 Mycoplasma hyopneumoniae J hypothetical protein YP_279046.1 293627 D 262719 CDS YP_279047.1 71893601 3563499 complement(294199..294999) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0596; triacylglycerol lipase 294999 lip 3563499 lip Mycoplasma hyopneumoniae J triacylglycerol lipase YP_279047.1 294199 R 262719 CDS YP_279048.1 71893602 3563500 complement(295000..296001) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0095; lipoate-protein ligase A 296001 lplA 3563500 lplA Mycoplasma hyopneumoniae J lipoate-protein ligase A YP_279048.1 295000 R 262719 CDS YP_279049.1 71893603 3563501 complement(296015..296365) 1 NC_007295.1 hypothetical protein 296365 3563501 MHJ_0247 Mycoplasma hyopneumoniae J hypothetical protein YP_279049.1 296015 R 262719 CDS YP_279050.1 71893604 3563502 296477..298624 1 NC_007295.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 298624 dnaX 3563502 dnaX Mycoplasma hyopneumoniae J DNA polymerase III subunits gamma and tau YP_279050.1 296477 D 262719 CDS YP_279051.1 71893605 3563503 298662..298967 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0718; hypothetical protein 298967 3563503 MHJ_0249 Mycoplasma hyopneumoniae J hypothetical protein YP_279051.1 298662 D 262719 CDS YP_279052.1 71893606 3563848 298970..299554 1 NC_007295.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 299554 recR 3563848 recR Mycoplasma hyopneumoniae J recombination protein RecR YP_279052.1 298970 D 262719 CDS YP_279053.1 71893607 3563908 299551..300192 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0125; thymidylate kinase 300192 tmk 3563908 tmk Mycoplasma hyopneumoniae J thymidylate kinase YP_279053.1 299551 D 262719 CDS YP_279054.1 71893608 3563872 300233..301045 1 NC_007295.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 301045 3563872 MHJ_0252 Mycoplasma hyopneumoniae J DNA polymerase III subunit delta' YP_279054.1 300233 D 262719 CDS YP_279055.1 71893609 3563778 301175..301783 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0313; hypothetical protein 301783 3563778 MHJ_0253 Mycoplasma hyopneumoniae J hypothetical protein YP_279055.1 301175 D 262719 CDS YP_279056.1 71893610 3563779 301816..302352 1 NC_007295.1 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase 302352 hpt 3563779 hpt Mycoplasma hyopneumoniae J hypoxanthine-guanine phosphoribosyltransferase YP_279056.1 301816 D 262719 CDS YP_279057.1 71893611 3563780 302382..303200 1 NC_007295.1 with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 303200 cbiO 3563780 cbiO Mycoplasma hyopneumoniae J cobalt transporter ATP-binding subunit YP_279057.1 302382 D 262719 CDS YP_279058.1 71893612 3563781 303173..304075 1 NC_007295.1 with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 304075 3563781 MHJ_0256 Mycoplasma hyopneumoniae J cobalt transporter ATP-binding subunit YP_279058.1 303173 D 262719 CDS YP_279059.1 71893613 3563782 304065..305027 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0619; ABC transporter permease 305027 3563782 MHJ_0257 Mycoplasma hyopneumoniae J ABC transporter permease YP_279059.1 304065 D 262719 CDS YP_279060.1 71893614 3563783 305028..307109 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0272; DNA ligase 307109 lig 3563783 lig Mycoplasma hyopneumoniae J DNA ligase YP_279060.1 305028 D 262719 CDS YP_279061.1 71893615 3563784 307179..308132 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG1323; hypothetical protein 308132 3563784 MHJ_0259 Mycoplasma hyopneumoniae J hypothetical protein YP_279061.1 307179 D 262719 CDS YP_279062.1 71893616 3563785 complement(308129..310702) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0474; cation-transporting P-type ATPase 310702 mgtA 3563785 mgtA Mycoplasma hyopneumoniae J cation-transporting P-type ATPase YP_279062.1 308129 R 262719 CDS YP_279063.1 71893617 3563786 310834..311271 1 NC_007295.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 311271 smpB 3563786 smpB Mycoplasma hyopneumoniae J SsrA-binding protein YP_279063.1 310834 D 262719 CDS YP_279064.1 71893618 3563787 311271..311897 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1525; nuclease, lipoprotein 311897 3563787 MHJ_0262 Mycoplasma hyopneumoniae J nuclease, lipoprotein YP_279064.1 311271 D 262719 CDS YP_279065.1 71893619 3563788 complement(312028..315012) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; P102-like protein 315012 3563788 MHJ_0263 Mycoplasma hyopneumoniae J P102-like protein YP_279065.1 312028 R 262719 CDS YP_279066.1 71893620 3563789 complement(315111..318182) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; P97-like protein 318182 3563789 MHJ_0264 Mycoplasma hyopneumoniae J P97-like protein YP_279066.1 315111 R 262719 CDS YP_279067.1 71893621 3563790 318698..319387 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0016; phenylalanyl-tRNA synthetase subunit alpha 319387 pheS 3563790 pheS Mycoplasma hyopneumoniae J phenylalanyl-tRNA synthetase subunit alpha YP_279067.1 318698 D 262719 CDS YP_279068.1 71893622 3563791 319398..321554 1 NC_007295.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 321554 pheT 3563791 pheT Mycoplasma hyopneumoniae J phenylalanyl-tRNA synthetase subunit beta YP_279068.1 319398 D 262719 CDS YP_279069.1 71893623 3563792 321613..321810 1 NC_007295.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 321810 rpmF 3563792 rpmF Mycoplasma hyopneumoniae J 50S ribosomal protein L32 YP_279069.1 321613 D 262719 CDS YP_279070.1 71893624 3563793 322434..323276 1 NC_007295.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 323276 truB 3563793 truB Mycoplasma hyopneumoniae J tRNA pseudouridine synthase B YP_279070.1 322434 D 262719 CDS YP_279071.1 71893625 3563794 323278..324099 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0561; hypothetical protein 324099 3563794 MHJ_0269 Mycoplasma hyopneumoniae J hypothetical protein YP_279071.1 323278 D 262719 CDS YP_279072.1 71893626 3563795 324092..324937 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0196; hypothetical protein 324937 3563795 MHJ_0270 Mycoplasma hyopneumoniae J hypothetical protein YP_279072.1 324092 D 262719 CDS YP_279073.1 71893627 3563796 complement(324934..325752) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG1737; transcriptional regulator 325752 3563796 MHJ_0271 Mycoplasma hyopneumoniae J transcriptional regulator YP_279073.1 324934 R 262719 CDS YP_279074.2 161611221 3563797 326279..327883 1 NC_007295.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 327883 pyrG 3563797 pyrG Mycoplasma hyopneumoniae J CTP synthetase YP_279074.2 326279 D 262719 CDS YP_279075.1 71893629 3563798 complement(327895..328461) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0558; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 328461 pgsA 3563798 pgsA Mycoplasma hyopneumoniae J CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_279075.1 327895 R 262719 CDS YP_279076.1 71893630 3563799 complement(328464..329111) 1 NC_007295.1 hypothetical protein 329111 3563799 MHJ_0274 Mycoplasma hyopneumoniae J hypothetical protein YP_279076.1 328464 R 262719 CDS YP_279077.1 71893631 3563800 complement(329142..331064) 1 NC_007295.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 331064 topA 3563800 topA Mycoplasma hyopneumoniae J DNA topoisomerase I YP_279077.1 329142 R 262719 CDS YP_279078.1 71893632 3563801 complement(331057..331422) 1 NC_007295.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 331422 rplS 3563801 rplS Mycoplasma hyopneumoniae J 50S ribosomal protein L19 YP_279078.1 331057 R 262719 CDS YP_279079.1 71893633 3563802 complement(331476..332159) 1 NC_007295.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 332159 trmD 3563802 trmD Mycoplasma hyopneumoniae J tRNA (guanine-N(1)-)-methyltransferase YP_279079.1 331476 R 262719 CDS YP_279080.1 71893634 3563689 complement(332181..332447) 1 NC_007295.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 332447 rpsP 3563689 rpsP Mycoplasma hyopneumoniae J 30S ribosomal protein S16 YP_279080.1 332181 R 262719 CDS YP_279081.1 71893635 3563690 complement(332735..333187) 1 NC_007295.1 hypothetical protein 333187 3563690 MHJ_0279 Mycoplasma hyopneumoniae J hypothetical protein YP_279081.1 332735 R 262719 CDS YP_279082.1 71893636 3563691 complement(333347..335404) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; TC:3.A.1.106.1; ABC transporter ATP-binding protein 335404 3563691 MHJ_0280 Mycoplasma hyopneumoniae J ABC transporter ATP-binding protein YP_279082.1 333347 R 262719 CDS YP_279083.1 71893637 3563692 complement(335642..337528) 1 NC_007295.1 hypothetical protein 337528 3563692 MHJ_0281 Mycoplasma hyopneumoniae J hypothetical protein YP_279083.1 335642 R 262719 CDS YP_279084.1 71893638 3563693 complement(337532..338071) 1 NC_007295.1 hypothetical protein 338071 3563693 MHJ_0282 Mycoplasma hyopneumoniae J hypothetical protein YP_279084.1 337532 R 262719 CDS YP_279085.1 71893639 3563694 338677..339198 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 339198 3563694 MHJ_0283 Mycoplasma hyopneumoniae J hypothetical protein YP_279085.1 338677 D 262719 CDS YP_279086.1 71893640 3563695 complement(339318..340421) 1 NC_007295.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 340421 ychF 3563695 ychF Mycoplasma hyopneumoniae J GTP-dependent nucleic acid-binding protein EngD YP_279086.1 339318 R 262719 CDS YP_279087.2 161611220 3563696 complement(340431..340694) 1 NC_007295.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 340694 rpsR 3563696 rpsR Mycoplasma hyopneumoniae J 30S ribosomal protein S18 YP_279087.2 340431 R 262719 CDS YP_279088.1 71893642 3563697 complement(340712..341272) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0629; single-strand binding protein 341272 ssb 3563697 ssb Mycoplasma hyopneumoniae J single-strand binding protein YP_279088.1 340712 R 262719 CDS YP_279089.1 71893643 3563698 complement(341290..342015) 1 NC_007295.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 342015 rpsF 3563698 rpsF Mycoplasma hyopneumoniae J 30S ribosomal protein S6 YP_279089.1 341290 R 262719 CDS YP_279090.1 71893644 3563699 complement(342721..343863) 1 NC_007295.1 hypothetical protein 343863 3563699 MHJ_0288 Mycoplasma hyopneumoniae J hypothetical protein YP_279090.1 342721 R 262719 CDS YP_279091.1 71893645 3563700 complement(343902..344666) 1 NC_007295.1 hypothetical protein 344666 3563700 MHJ_0289 Mycoplasma hyopneumoniae J hypothetical protein YP_279091.1 343902 R 262719 CDS YP_279092.1 71893646 3563701 344847..345599 1 NC_007295.1 hypothetical protein 345599 3563701 MHJ_0290 Mycoplasma hyopneumoniae J hypothetical protein YP_279092.1 344847 D 262719 CDS YP_279093.1 71893647 3563702 346450..347547 1 NC_007295.1 hypothetical protein 347547 3563702 MHJ_0291 Mycoplasma hyopneumoniae J hypothetical protein YP_279093.1 346450 D 262719 CDS YP_279094.1 71893648 3563703 347703..348098 1 NC_007295.1 hypothetical protein 348098 3563703 MHJ_0292 Mycoplasma hyopneumoniae J hypothetical protein YP_279094.1 347703 D 262719 CDS YP_279095.1 71893649 3563704 348157..348579 1 NC_007295.1 hypothetical protein 348579 3563704 MHJ_0293 Mycoplasma hyopneumoniae J hypothetical protein YP_279095.1 348157 D 262719 CDS YP_279096.1 71893650 3563705 348732..350165 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0477; permease 350165 3563705 MHJ_0294 Mycoplasma hyopneumoniae J permease YP_279096.1 348732 D 262719 CDS YP_279097.1 71893651 3563706 350158..350892 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0584; TC:3.A.1.109.1; glycerophosphoryl diester phosphodiesterase 350892 ugpQ 3563706 ugpQ Mycoplasma hyopneumoniae J glycerophosphoryl diester phosphodiesterase YP_279097.1 350158 D 262719 CDS YP_279098.1 71893652 3563708 complement(351466..353418) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG1126; TC:3.A.1.123.3; ABC transporter ATP-binding protein 353418 3563708 MHJ_0297 Mycoplasma hyopneumoniae J ABC transporter ATP-binding protein YP_279098.1 351466 R 262719 CDS YP_279099.1 71893653 3563709 complement(353495..355777) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; TC:3.A.1.123.3; ABC transporter ATP-binding protein 355777 3563709 MHJ_0298 Mycoplasma hyopneumoniae J ABC transporter ATP-binding protein YP_279099.1 353495 R 262719 CDS YP_279100.1 71893654 3563710 complement(355743..356654) 1 NC_007295.1 hypothetical protein 356654 3563710 MHJ_0299 Mycoplasma hyopneumoniae J hypothetical protein YP_279100.1 355743 R 262719 CDS YP_279101.1 71893655 3563711 357335..363076 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 363076 3563711 MHJ_0300 Mycoplasma hyopneumoniae J hypothetical protein YP_279101.1 357335 D 262719 CDS YP_279102.1 71893656 3563712 complement(363383..364555) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1902; NADH-dependent flavin oxidoreductase 364555 baiH 3563712 baiH Mycoplasma hyopneumoniae J NADH-dependent flavin oxidoreductase YP_279102.1 363383 R 262719 CDS YP_279103.1 71893657 3563713 complement(364558..365589) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; lipoate-protein ligase A 365589 lplA-1 3563713 lplA-1 Mycoplasma hyopneumoniae J lipoate-protein ligase A YP_279103.1 364558 R 262719 CDS YP_279104.1 71893658 3563714 complement(365592..366434) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 366434 3563714 MHJ_0303 Mycoplasma hyopneumoniae J hypothetical protein YP_279104.1 365592 R 262719 CDS YP_279105.1 71893659 3563715 complement(366436..366768) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0509; glycine cleavage system H protein 366768 3563715 MHJ_0304 Mycoplasma hyopneumoniae J glycine cleavage system H protein YP_279105.1 366436 R 262719 CDS YP_279106.1 71893660 3563716 367181..368002 1 NC_007295.1 hypothetical protein 368002 3563716 MHJ_0305 Mycoplasma hyopneumoniae J hypothetical protein YP_279106.1 367181 D 262719 CDS YP_279107.1 71893661 3563717 368005..370323 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1136; TC:3.A.1.123.3; ABC transporter ATP-binding protein 370323 3563717 MHJ_0306 Mycoplasma hyopneumoniae J ABC transporter ATP-binding protein YP_279107.1 368005 D 262719 CDS YP_279108.1 71893662 3563718 370415..372367 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1136; TC:3.A.1.123.3; ABC transporter ATP-binding protein 372367 3563718 MHJ_0307 Mycoplasma hyopneumoniae J ABC transporter ATP-binding protein YP_279108.1 370415 D 262719 CDS YP_279109.1 71893663 3563720 374223..376634 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 376634 3563720 MHJ_0309 Mycoplasma hyopneumoniae J hypothetical protein YP_279109.1 374223 D 262719 CDS YP_279110.1 71893664 3563721 complement(377193..378851) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; ISMHp1 transposase 378851 3563721 MHJ_0310 Mycoplasma hyopneumoniae J ISMHp1 transposase YP_279110.1 377193 R 262719 CDS YP_279111.1 71893665 3563722 379203..380228 1 NC_007295.1 hypothetical protein 380228 3563722 MHJ_0311 Mycoplasma hyopneumoniae J hypothetical protein YP_279111.1 379203 D 262719 CDS YP_279112.1 71893666 3563723 380248..381579 1 NC_007295.1 hypothetical protein 381579 3563723 MHJ_0312 Mycoplasma hyopneumoniae J hypothetical protein YP_279112.1 380248 D 262719 CDS YP_279113.1 71893667 3563724 382033..382269 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 382269 3563724 MHJ_0313 Mycoplasma hyopneumoniae J hypothetical protein YP_279113.1 382033 D 262719 CDS YP_279114.1 71893668 3563725 complement(382692..384149) 1 NC_007295.1 hypothetical protein 384149 3563725 MHJ_0314 Mycoplasma hyopneumoniae J hypothetical protein YP_279114.1 382692 R 262719 CDS YP_279115.1 71893669 3563726 complement(384154..384813) 1 NC_007295.1 hypothetical protein 384813 3563726 MHJ_0315 Mycoplasma hyopneumoniae J hypothetical protein YP_279115.1 384154 R 262719 CDS YP_279116.1 71893670 3563727 385311..385574 1 NC_007295.1 hypothetical protein 385574 3563727 MHJ_0316 Mycoplasma hyopneumoniae J hypothetical protein YP_279116.1 385311 D 262719 CDS YP_279117.1 71893671 3563445 complement(385706..385975) 1 NC_007295.1 hypothetical protein 385975 3563445 MHJ_0317 Mycoplasma hyopneumoniae J hypothetical protein YP_279117.1 385706 R 262719 CDS YP_279118.1 71893672 3563446 complement(386038..386466) 1 NC_007295.1 hypothetical protein 386466 3563446 MHJ_0318 Mycoplasma hyopneumoniae J hypothetical protein YP_279118.1 386038 R 262719 CDS YP_279119.1 71893673 3563447 complement(386475..387917) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG1002; hypothetical protein 387917 3563447 MHJ_0319 Mycoplasma hyopneumoniae J hypothetical protein YP_279119.1 386475 R 262719 CDS YP_279120.1 71893674 3563448 complement(388065..388967) 1 NC_007295.1 hypothetical protein 388967 3563448 MHJ_0320 Mycoplasma hyopneumoniae J hypothetical protein YP_279120.1 388065 R 262719 CDS YP_279121.1 71893675 3563449 complement(389055..389984) 1 NC_007295.1 hypothetical protein 389984 3563449 MHJ_0321 Mycoplasma hyopneumoniae J hypothetical protein YP_279121.1 389055 R 262719 CDS YP_279122.1 71893676 3563450 complement(389986..390894) 1 NC_007295.1 hypothetical protein 390894 3563450 MHJ_0322 Mycoplasma hyopneumoniae J hypothetical protein YP_279122.1 389986 R 262719 CDS YP_279123.1 71893677 3563451 391214..391477 1 NC_007295.1 hypothetical protein 391477 3563451 MHJ_0323 Mycoplasma hyopneumoniae J hypothetical protein YP_279123.1 391214 D 262719 CDS YP_279124.1 71893678 3563452 complement(391532..392164) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; hypothetical protein 392164 3563452 MHJ_0324 Mycoplasma hyopneumoniae J hypothetical protein YP_279124.1 391532 R 262719 CDS YP_279125.1 71893679 3563453 392553..393641 1 NC_007295.1 hypothetical protein 393641 3563453 MHJ_0325 Mycoplasma hyopneumoniae J hypothetical protein YP_279125.1 392553 D 262719 CDS YP_279126.1 71893680 3563454 393711..394358 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG1704; hypothetical protein 394358 3563454 MHJ_0326 Mycoplasma hyopneumoniae J hypothetical protein YP_279126.1 393711 D 262719 CDS YP_279127.1 71893681 3563455 complement(394895..395356) 1 NC_007295.1 hypothetical protein 395356 3563455 MHJ_0327 Mycoplasma hyopneumoniae J hypothetical protein YP_279127.1 394895 R 262719 CDS YP_279128.1 71893682 3563456 395837..396589 1 NC_007295.1 hypothetical protein 396589 3563456 MHJ_0328 Mycoplasma hyopneumoniae J hypothetical protein YP_279128.1 395837 D 262719 CDS YP_279129.1 71893683 3563457 complement(396657..398315) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; transposase 398315 3563457 MHJ_0329 Mycoplasma hyopneumoniae J transposase YP_279129.1 396657 R 262719 CDS YP_279130.1 71893684 3563458 complement(399163..400422) 1 NC_007295.1 hypothetical protein 400422 3563458 MHJ_0330 Mycoplasma hyopneumoniae J hypothetical protein YP_279130.1 399163 R 262719 CDS YP_279131.1 71893685 3563459 complement(400637..401422) 1 NC_007295.1 hypothetical protein 401422 3563459 MHJ_0331 Mycoplasma hyopneumoniae J hypothetical protein YP_279131.1 400637 R 262719 CDS YP_279132.1 71893686 3563460 complement(402065..404461) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG1404; hypothetical protein 404461 3563460 MHJ_0332 Mycoplasma hyopneumoniae J hypothetical protein YP_279132.1 402065 R 262719 CDS YP_279133.1 71893687 3563461 complement(405169..407556) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1136; TC:3.A.1.3.2; ABC transporter ATP-binding protein 407556 3563461 MHJ_0333 Mycoplasma hyopneumoniae J ABC transporter ATP-binding protein YP_279133.1 405169 R 262719 CDS YP_279134.1 71893688 3563462 complement(407543..409399) 1 NC_007295.1 hypothetical protein 409399 3563462 MHJ_0334 Mycoplasma hyopneumoniae J hypothetical protein YP_279134.1 407543 R 262719 CDS YP_279135.1 71893689 3563463 complement(409435..410103) 1 NC_007295.1 hypothetical protein 410103 3563463 MHJ_0335 Mycoplasma hyopneumoniae J hypothetical protein YP_279135.1 409435 R 262719 CDS YP_279136.1 71893690 3563465 complement(411710..412723) 1 NC_007295.1 hypothetical protein 412723 3563465 MHJ_0337 Mycoplasma hyopneumoniae J hypothetical protein YP_279136.1 411710 R 262719 CDS YP_279137.1 71893691 3563466 complement(413306..413500) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 413500 3563466 MHJ_0338 Mycoplasma hyopneumoniae J hypothetical protein YP_279137.1 413306 R 262719 CDS YP_279138.1 71893692 3563467 413711..414025 1 NC_007295.1 hypothetical protein 414025 3563467 MHJ_0339 Mycoplasma hyopneumoniae J hypothetical protein YP_279138.1 413711 D 262719 CDS YP_279139.1 71893693 3563468 414028..414630 1 NC_007295.1 hypothetical protein 414630 3563468 MHJ_0340 Mycoplasma hyopneumoniae J hypothetical protein YP_279139.1 414028 D 262719 CDS YP_279140.1 71893694 3563469 414651..415721 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 415721 3563469 MHJ_0341 Mycoplasma hyopneumoniae J hypothetical protein YP_279140.1 414651 D 262719 CDS YP_279141.1 71893695 3563470 complement(416857..417714) 1 NC_007295.1 hypothetical protein 417714 3563470 MHJ_0342 Mycoplasma hyopneumoniae J hypothetical protein YP_279141.1 416857 R 262719 CDS YP_279142.1 71893696 3563471 complement(418260..418535) 1 NC_007295.1 hypothetical protein 418535 3563471 MHJ_0343 Mycoplasma hyopneumoniae J hypothetical protein YP_279142.1 418260 R 262719 CDS YP_279143.1 71893697 3563472 complement(418712..419539) 1 NC_007295.1 hypothetical protein 419539 3563472 MHJ_0344 Mycoplasma hyopneumoniae J hypothetical protein YP_279143.1 418712 R 262719 CDS YP_279144.1 71893698 3563473 complement(419702..420691) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 420691 3563473 MHJ_0345 Mycoplasma hyopneumoniae J hypothetical protein YP_279144.1 419702 R 262719 CDS YP_279145.1 71893699 3563474 complement(420694..422034) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0561; hypothetical protein 422034 3563474 MHJ_0346 Mycoplasma hyopneumoniae J hypothetical protein YP_279145.1 420694 R 262719 CDS YP_279146.1 71893700 3563475 422146..424299 1 NC_007295.1 hypothetical protein 424299 3563475 MHJ_0347 Mycoplasma hyopneumoniae J hypothetical protein YP_279146.1 422146 D 262719 CDS YP_279147.1 71893701 3563476 424315..425913 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; P60-like lipoprotein 425913 3563476 MHJ_0348 Mycoplasma hyopneumoniae J P60-like lipoprotein YP_279147.1 424315 D 262719 CDS YP_279148.1 71893702 3563477 425945..426277 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0537; HIT-like protein 426277 hit 3563477 hit Mycoplasma hyopneumoniae J HIT-like protein YP_279148.1 425945 D 262719 CDS YP_279149.1 71893703 3563478 complement(426332..427981) 1 NC_007295.1 hypothetical protein 427981 3563478 MHJ_0350 Mycoplasma hyopneumoniae J hypothetical protein YP_279149.1 426332 R 262719 CDS YP_279150.1 71893704 3563479 complement(428092..429111) 1 NC_007295.1 hypothetical protein 429111 3563479 MHJ_0351 Mycoplasma hyopneumoniae J hypothetical protein YP_279150.1 428092 R 262719 CDS YP_279151.1 71893705 3563480 complement(429120..429650) 1 NC_007295.1 hypothetical protein 429650 3563480 MHJ_0352 Mycoplasma hyopneumoniae J hypothetical protein YP_279151.1 429120 R 262719 CDS YP_279152.1 71893706 3563481 429765..431321 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0531; TC:2.A.3.8.5; amino acid permease 431321 3563481 MHJ_0353 Mycoplasma hyopneumoniae J amino acid permease YP_279152.1 429765 D 262719 CDS YP_279153.1 71893707 3563943 complement(431698..432444) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0580; TC:1.A.8.2.1; glycerol uptake facilitator protein 432444 glpF 3563943 glpF Mycoplasma hyopneumoniae J glycerol uptake facilitator protein YP_279153.1 431698 R 262719 CDS YP_279154.1 71893708 3563944 complement(432458..433990) 1 NC_007295.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 433990 glpK 3563944 glpK Mycoplasma hyopneumoniae J glycerol kinase YP_279154.1 432458 R 262719 CDS YP_279155.1 71893709 3563945 434330..435595 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; P37-like ABC transporter substrate-binding lipoprotein 435595 3563945 MHJ_0356 Mycoplasma hyopneumoniae J P37-like ABC transporter substrate-binding lipoprotein YP_279155.1 434330 D 262719 CDS YP_279156.1 71893710 3563946 435579..436349 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; ABC transporter ATP-binding protein 436349 3563946 MHJ_0357 Mycoplasma hyopneumoniae J ABC transporter ATP-binding protein YP_279156.1 435579 D 262719 CDS YP_279157.1 71893711 3563947 436327..438048 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG3639; ABC transport system permease p69 - like 438048 3563947 MHJ_0358 Mycoplasma hyopneumoniae J ABC transport system permease p69 - like YP_279157.1 436327 D 262719 CDS YP_279158.1 71893712 3563948 438156..438632 1 NC_007295.1 hypothetical protein 438632 3563948 MHJ_0359 Mycoplasma hyopneumoniae J hypothetical protein YP_279158.1 438156 D 262719 CDS YP_279159.1 71893713 3563949 438650..439936 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0658; TC:3.A.11.1.1; hypothetical protein 439936 3563949 MHJ_0360 Mycoplasma hyopneumoniae J hypothetical protein YP_279159.1 438650 D 262719 CDS YP_279160.1 71893714 3563950 439948..440784 1 NC_007295.1 hypothetical protein 440784 3563950 MHJ_0361 Mycoplasma hyopneumoniae J hypothetical protein YP_279160.1 439948 D 262719 CDS YP_279161.1 71893715 3563951 441117..443312 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; lipoprotein 443312 3563951 MHJ_0362 Mycoplasma hyopneumoniae J lipoprotein YP_279161.1 441117 D 262719 CDS YP_279162.1 71893716 3563952 443369..445444 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; lipoprotein 445444 3563952 MHJ_0363 Mycoplasma hyopneumoniae J lipoprotein YP_279162.1 443369 D 262719 CDS YP_279163.1 71893717 3563953 445471..446403 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1525; lipoprotein 446403 3563953 MHJ_0364 Mycoplasma hyopneumoniae J lipoprotein YP_279163.1 445471 D 262719 CDS YP_279164.2 229220847 3563954 446417..448594 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; ABC transporter permease 448594 3563954 MHJ_0365 Mycoplasma hyopneumoniae J ABC transporter permease YP_279164.2 446417 D 262719 CDS YP_279165.1 71893719 3563955 448603..449604 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1175; TC:3.A.1.1.3; ABC transport permease 449604 3563955 MHJ_0366 Mycoplasma hyopneumoniae J ABC transport permease YP_279165.1 448603 D 262719 CDS YP_279166.2 229220846 3563956 449567..450532 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0395; TC:3.A.1.1.4; ABC transporter permease 450532 3563956 MHJ_0367 Mycoplasma hyopneumoniae J ABC transporter permease YP_279166.2 449567 D 262719 CDS YP_279167.1 71893721 3563957 complement(450864..453737) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; Lppt protein 453737 3563957 MHJ_0368 Mycoplasma hyopneumoniae J Lppt protein YP_279167.1 450864 R 262719 CDS YP_279168.1 71893722 3563958 complement(453750..456698) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0419; hypothetical protein 456698 3563958 MHJ_0369 Mycoplasma hyopneumoniae J hypothetical protein YP_279168.1 453750 R 262719 CDS YP_279169.1 71893723 3563959 complement(456869..457348) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG1762; PTS system transporter subunit IIA 457348 sgaA 3563959 sgaA Mycoplasma hyopneumoniae J PTS system transporter subunit IIA YP_279169.1 456869 R 262719 CDS YP_279170.1 71893724 3563960 complement(457373..457663) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG3414; PTS system transporter subunit IIB 457663 3563960 MHJ_0371 Mycoplasma hyopneumoniae J PTS system transporter subunit IIB YP_279170.1 457373 R 262719 CDS YP_279171.1 71893725 3563961 complement(458086..459855) 1 NC_007295.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 459855 ulaA 3563961 ulaA Mycoplasma hyopneumoniae J PTS system ascorbate-specific transporter subunit IIC YP_279171.1 458086 R 262719 CDS YP_279172.1 71893726 3563962 complement(459953..461005) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; GeneMark; Blastx; COG1735; hypothetical protein 461005 3563962 MHJ_0373 Mycoplasma hyopneumoniae J hypothetical protein YP_279172.1 459953 R 262719 CDS YP_279173.1 71893727 3563963 complement(461191..463005) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; lipoprotein 463005 3563963 MHJ_0374 Mycoplasma hyopneumoniae J lipoprotein YP_279173.1 461191 R 262719 CDS YP_279174.1 71893728 3563964 463146..464309 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG3839; ABC transport ATP-binding protein 464309 3563964 MHJ_0375 Mycoplasma hyopneumoniae J ABC transport ATP-binding protein YP_279174.1 463146 D 262719 CDS YP_279175.1 71893729 3563965 464305..465234 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1175; TC:3.A.1.1.10; ABC transporter permease 465234 3563965 MHJ_0376 Mycoplasma hyopneumoniae J ABC transporter permease YP_279175.1 464305 D 262719 CDS YP_279176.1 71893730 3563966 465230..466057 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0395; TC:3.A.1.1.3; ABC transporter permease 466057 3563966 MHJ_0377 Mycoplasma hyopneumoniae J ABC transporter permease YP_279176.1 465230 D 262719 CDS YP_279177.1 71893731 3563967 466127..466633 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1739; proline dipeptidase 466633 3563967 MHJ_0378 Mycoplasma hyopneumoniae J proline dipeptidase YP_279177.1 466127 D 262719 CDS YP_279178.1 71893732 3563968 466743..469043 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0313; TC:3.A.1.109.1; ABC transporter ATP-binding protein 469043 3563968 MHJ_0379 Mycoplasma hyopneumoniae J ABC transporter ATP-binding protein YP_279178.1 466743 D 262719 CDS YP_279179.1 71893733 3563969 complement(469140..469472) 1 NC_007295.1 identified by sequence similarity; ORF located using GeneMark; Blastx; COG0526; thioredoxin 469472 3563969 MHJ_0380 Mycoplasma hyopneumoniae J thioredoxin YP_279179.1 469140 R 262719 CDS YP_279180.1 71893734 3563970 complement(469539..470978) 1 NC_007295.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 470978 proS 3563970 proS Mycoplasma hyopneumoniae J prolyl-tRNA synthetase YP_279180.1 469539 R 262719 CDS YP_279181.1 71893735 3563972 473202..474929 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG2189; type III restriction-modification system: methylase 474929 3563972 MHJ_0383 Mycoplasma hyopneumoniae J type III restriction-modification system: methylase YP_279181.1 473202 D 262719 CDS YP_279182.1 71893736 3563973 474947..477379 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 477379 3563973 MHJ_0384 Mycoplasma hyopneumoniae J hypothetical protein YP_279182.1 474947 D 262719 CDS YP_279183.1 71893737 3563974 complement(478192..478419) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; transposase 478419 3563974 MHJ_0385 Mycoplasma hyopneumoniae J transposase YP_279183.1 478192 R 262719 CDS YP_279186.1 71893740 3563977 complement(479478..479657) 1 NC_007295.1 hypothetical protein 479657 3563977 MHJ_0388 Mycoplasma hyopneumoniae J hypothetical protein YP_279186.1 479478 R 262719 CDS YP_279187.1 71893741 3563978 479807..480739 1 NC_007295.1 hypothetical protein 480739 3563978 MHJ_0389 Mycoplasma hyopneumoniae J hypothetical protein YP_279187.1 479807 D 262719 CDS YP_279188.1 71893742 3563979 complement(480789..481016) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; transposase 481016 3563979 MHJ_0390 Mycoplasma hyopneumoniae J transposase YP_279188.1 480789 R 262719 CDS YP_279191.1 71893745 3563680 complement(482037..482216) 1 NC_007295.1 hypothetical protein 482216 3563680 MHJ_0393 Mycoplasma hyopneumoniae J hypothetical protein YP_279191.1 482037 R 262719 CDS YP_279192.1 71893746 3563681 complement(482355..483161) 1 NC_007295.1 hypothetical protein 483161 3563681 MHJ_0394 Mycoplasma hyopneumoniae J hypothetical protein YP_279192.1 482355 R 262719 CDS YP_279193.1 71893747 3563682 complement(483185..483976) 1 NC_007295.1 hypothetical protein 483976 3563682 MHJ_0395 Mycoplasma hyopneumoniae J hypothetical protein YP_279193.1 483185 R 262719 CDS YP_279194.1 71893748 3563738 complement(484167..484904) 1 NC_007295.1 hypothetical protein 484904 3563738 MHJ_0396 Mycoplasma hyopneumoniae J hypothetical protein YP_279194.1 484167 R 262719 CDS YP_279195.1 71893749 3563864 complement(484906..485496) 1 NC_007295.1 hypothetical protein 485496 3563864 MHJ_0397 Mycoplasma hyopneumoniae J hypothetical protein YP_279195.1 484906 R 262719 CDS YP_279196.1 71893750 3563865 complement(485839..487020) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 487020 3563865 MHJ_0398 Mycoplasma hyopneumoniae J hypothetical protein YP_279196.1 485839 R 262719 CDS YP_279198.1 71893752 3563739 489474..489905 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 489905 3563739 MHJ_0401 Mycoplasma hyopneumoniae J hypothetical protein YP_279198.1 489474 D 262719 CDS YP_279199.1 71893753 3563740 489946..490272 1 NC_007295.1 hypothetical protein 490272 3563740 MHJ_0402 Mycoplasma hyopneumoniae J hypothetical protein YP_279199.1 489946 D 262719 CDS YP_279200.1 71893754 3563741 complement(490301..491680) 1 NC_007295.1 hypothetical protein 491680 3563741 MHJ_0403 Mycoplasma hyopneumoniae J hypothetical protein YP_279200.1 490301 R 262719 CDS YP_279201.1 71893755 3563742 492459..492899 1 NC_007295.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 492899 3563742 MHJ_0404 Mycoplasma hyopneumoniae J cell division protein MraZ YP_279201.1 492459 D 262719 CDS YP_279202.1 71893756 3563743 492901..493791 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0275; S-adenosyl-methyltransferase 493791 3563743 MHJ_0405 Mycoplasma hyopneumoniae J S-adenosyl-methyltransferase YP_279202.1 492901 D 262719 CDS YP_279203.1 71893757 3563744 493840..494805 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0206; cell division protein ftsZ 494805 ftsZ 3563744 ftsZ Mycoplasma hyopneumoniae J cell division protein ftsZ YP_279203.1 493840 D 262719 CDS YP_279204.1 71893758 3563745 495034..496047 1 NC_007295.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 496047 3563745 MHJ_0407 Mycoplasma hyopneumoniae J nicotinate phosphoribosyltransferase YP_279204.1 495034 D 262719 CDS YP_279205.1 71893759 3563746 496055..496807 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG4123; DNA methylase 496807 3563746 MHJ_0408 Mycoplasma hyopneumoniae J DNA methylase YP_279205.1 496055 D 262719 CDS YP_279206.1 71893760 3563287 496800..498341 1 NC_007295.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 498341 metG 3563287 metG Mycoplasma hyopneumoniae J methionyl-tRNA synthetase YP_279206.1 496800 D 262719 CDS YP_279207.1 71893761 3563288 complement(498338..499213) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; hypothetical protein 499213 3563288 MHJ_0410 Mycoplasma hyopneumoniae J hypothetical protein YP_279207.1 498338 R 262719 CDS YP_279208.1 71893762 3563289 complement(499414..500097) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0571; ribonuclease III 500097 rnc 3563289 rnc Mycoplasma hyopneumoniae J ribonuclease III YP_279208.1 499414 R 262719 CDS YP_279209.1 71893763 3563290 complement(500162..500719) 1 NC_007295.1 hypothetical protein 500719 3563290 MHJ_0412 Mycoplasma hyopneumoniae J hypothetical protein YP_279209.1 500162 R 262719 CDS YP_279210.1 71893764 3563291 501028..502551 1 NC_007295.1 hypothetical protein 502551 3563291 MHJ_0413 Mycoplasma hyopneumoniae J hypothetical protein YP_279210.1 501028 D 262719 CDS YP_279211.1 71893765 3563292 503044..504393 1 NC_007295.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 504393 asnC 3563292 asnC Mycoplasma hyopneumoniae J asparaginyl-tRNA synthetase YP_279211.1 503044 D 262719 CDS YP_279212.1 71893766 3563293 504455..505045 1 NC_007295.1 hypothetical protein 505045 3563293 MHJ_0415 Mycoplasma hyopneumoniae J hypothetical protein YP_279212.1 504455 D 262719 CDS YP_279213.1 71893767 3563294 505062..507308 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0210; ATP-dependent helicase PcrA 507308 pcrA 3563294 pcrA Mycoplasma hyopneumoniae J ATP-dependent helicase PcrA YP_279213.1 505062 D 262719 CDS YP_279214.1 71893768 3563295 507310..508734 1 NC_007295.1 hypothetical protein 508734 3563295 MHJ_0417 Mycoplasma hyopneumoniae J hypothetical protein YP_279214.1 507310 D 262719 CDS YP_279215.1 71893769 3563296 508838..509503 1 NC_007295.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 509503 ruvA 3563296 ruvA Mycoplasma hyopneumoniae J Holliday junction DNA helicase RuvA YP_279215.1 508838 D 262719 CDS YP_279216.1 71893770 3563297 509499..510437 1 NC_007295.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 510437 ruvB 3563297 ruvB Mycoplasma hyopneumoniae J Holliday junction DNA helicase RuvB YP_279216.1 509499 D 262719 CDS YP_279217.1 71893771 3563298 complement(510453..512276) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 512276 3563298 MHJ_0420 Mycoplasma hyopneumoniae J hypothetical protein YP_279217.1 510453 R 262719 CDS YP_279218.1 71893772 3563299 complement(512372..513520) 1 NC_007295.1 hypothetical protein 513520 3563299 MHJ_0421 Mycoplasma hyopneumoniae J hypothetical protein YP_279218.1 512372 R 262719 CDS YP_279219.1 71893773 3563300 complement(513777..514499) 1 NC_007295.1 hypothetical protein 514499 3563300 MHJ_0422 Mycoplasma hyopneumoniae J hypothetical protein YP_279219.1 513777 R 262719 CDS YP_279220.1 71893774 3563301 complement(514625..516283) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG2189; type III restriction-modification system: methylase 516283 3563301 MHJ_0423 Mycoplasma hyopneumoniae J type III restriction-modification system: methylase YP_279220.1 514625 R 262719 CDS YP_279221.1 71893775 3563302 complement(516642..516989) 1 NC_007295.1 hypothetical protein 516989 3563302 MHJ_0424 Mycoplasma hyopneumoniae J hypothetical protein YP_279221.1 516642 R 262719 CDS YP_279222.1 71893776 3563303 517247..517804 1 NC_007295.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 517804 efp 3563303 efp Mycoplasma hyopneumoniae J elongation factor P YP_279222.1 517247 D 262719 CDS YP_279223.1 71893777 3563304 517842..519689 1 NC_007295.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 519689 tkt 3563304 tkt Mycoplasma hyopneumoniae J transketolase YP_279223.1 517842 D 262719 CDS YP_279224.1 71893778 3563305 519847..520758 1 NC_007295.1 hypothetical protein 520758 3563305 MHJ_0427 Mycoplasma hyopneumoniae J hypothetical protein YP_279224.1 519847 D 262719 CDS YP_279225.1 71893779 3563306 520758..521876 1 NC_007295.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 521876 mnmA 3563306 mnmA Mycoplasma hyopneumoniae J tRNA-specific 2-thiouridylase MnmA YP_279225.1 520758 D 262719 CDS YP_279226.1 71893780 3563307 complement(521916..523145) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1881; hypothetical protein 523145 3563307 MHJ_0429 Mycoplasma hyopneumoniae J hypothetical protein YP_279226.1 521916 R 262719 CDS YP_279227.1 71893781 3563609 complement(523347..524744) 1 NC_007295.1 hypothetical protein 524744 3563609 MHJ_0430 Mycoplasma hyopneumoniae J hypothetical protein YP_279227.1 523347 R 262719 CDS YP_279228.1 71893782 3563610 complement(524949..526868) 1 NC_007295.1 hypothetical protein 526868 3563610 MHJ_0431 Mycoplasma hyopneumoniae J hypothetical protein YP_279228.1 524949 R 262719 CDS YP_279229.1 71893783 3563611 complement(526991..527494) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 527494 3563611 MHJ_0432 Mycoplasma hyopneumoniae J hypothetical protein YP_279229.1 526991 R 262719 CDS YP_279230.1 71893784 3563612 complement(527496..528338) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0561; hypothetical protein 528338 3563612 MHJ_0433 Mycoplasma hyopneumoniae J hypothetical protein YP_279230.1 527496 R 262719 CDS YP_279231.1 71893785 3563613 complement(528376..529098) 1 NC_007295.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 529098 araD 3563613 araD Mycoplasma hyopneumoniae J L-ribulose-5-phosphate 4-epimerase YP_279231.1 528376 R 262719 CDS YP_279232.1 71893786 3563544 complement(529088..529972) 1 NC_007295.1 UlaE; catalyzes the epimerization of L-ribulose-5-phosphate into L-xylulose-5-phosphate; part of the anaerobic L-ascorbate degradation pathway; L-xylulose 5-phosphate 3-epimerase 529972 sgaU 3563544 sgaU Mycoplasma hyopneumoniae J L-xylulose 5-phosphate 3-epimerase YP_279232.1 529088 R 262719 CDS YP_279233.1 71893787 3563545 complement(529953..530621) 1 NC_007295.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase 530621 ulaD 3563545 ulaD Mycoplasma hyopneumoniae J 3-keto-L-gulonate-6-phosphate decarboxylase YP_279233.1 529953 R 262719 CDS YP_279234.1 71893788 3563546 complement(530936..533023) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 533023 3563546 MHJ_0437 Mycoplasma hyopneumoniae J hypothetical protein YP_279234.1 530936 R 262719 CDS YP_279235.1 71893789 3563547 complement(533223..534812) 1 NC_007295.1 hypothetical protein 534812 3563547 MHJ_0438 Mycoplasma hyopneumoniae J hypothetical protein YP_279235.1 533223 R 262719 CDS YP_279236.1 71893790 3563548 535032..536690 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; transposase 536690 3563548 MHJ_0439 Mycoplasma hyopneumoniae J transposase YP_279236.1 535032 D 262719 CDS YP_279237.1 71893791 3563549 536765..537043 1 NC_007295.1 hypothetical protein 537043 3563549 MHJ_0440 Mycoplasma hyopneumoniae J hypothetical protein YP_279237.1 536765 D 262719 CDS YP_279238.1 71893792 3563550 complement(537119..539035) 1 NC_007295.1 hypothetical protein 539035 3563550 MHJ_0441 Mycoplasma hyopneumoniae J hypothetical protein YP_279238.1 537119 R 262719 CDS YP_279239.1 71893793 3563551 complement(539756..544771) 1 NC_007295.1 hypothetical protein 544771 3563551 MHJ_0442 Mycoplasma hyopneumoniae J hypothetical protein YP_279239.1 539756 R 262719 CDS YP_279240.1 71893794 3563552 complement(544822..551238) 1 NC_007295.1 hypothetical protein 551238 3563552 MHJ_0443 Mycoplasma hyopneumoniae J hypothetical protein YP_279240.1 544822 R 262719 CDS YP_279241.1 71893795 3563553 complement(551339..556051) 1 NC_007295.1 hypothetical protein 556051 3563553 MHJ_0444 Mycoplasma hyopneumoniae J hypothetical protein YP_279241.1 551339 R 262719 CDS YP_279242.1 71893796 3563554 complement(556075..563295) 1 NC_007295.1 hypothetical protein 563295 3563554 MHJ_0445 Mycoplasma hyopneumoniae J hypothetical protein YP_279242.1 556075 R 262719 CDS YP_279243.1 71893797 3563555 complement(563611..564165) 1 NC_007295.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 564165 engB 3563555 engB Mycoplasma hyopneumoniae J ribosome biogenesis GTP-binding protein YsxC YP_279243.1 563611 R 262719 CDS YP_279244.1 71893798 3563556 complement(564349..565089) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG1692; hypothetical protein 565089 3563556 MHJ_0447 Mycoplasma hyopneumoniae J hypothetical protein YP_279244.1 564349 R 262719 CDS YP_279245.1 71893799 3563557 complement(565392..566525) 1 NC_007295.1 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 566525 metK 3563557 metK Mycoplasma hyopneumoniae J S-adenosylmethionine synthetase YP_279245.1 565392 R 262719 CDS YP_279246.1 71893800 3563558 complement(566618..567502) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1136; ABC transporter ATP-binding protein 567502 3563558 MHJ_0449 Mycoplasma hyopneumoniae J ABC transporter ATP-binding protein YP_279246.1 566618 R 262719 CDS YP_279247.1 71893801 3563559 complement(567623..575605) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 575605 3563559 MHJ_0450 Mycoplasma hyopneumoniae J hypothetical protein YP_279247.1 567623 R 262719 CDS YP_279248.1 71893802 3563560 575771..576355 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1182; ACP phosphodieterase 576355 acpD 3563560 acpD Mycoplasma hyopneumoniae J ACP phosphodieterase YP_279248.1 575771 D 262719 CDS YP_279249.1 71893803 3563561 576369..576974 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1182; TC:3.A.1.1.10; ACP phosphodieterase 576974 acpD-1 3563561 acpD-1 Mycoplasma hyopneumoniae J ACP phosphodieterase YP_279249.1 576369 D 262719 CDS YP_279250.1 71893804 3563562 577033..577254 1 NC_007295.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 577254 rpmE 3563562 rpmE Mycoplasma hyopneumoniae J 50S ribosomal protein L31 YP_279250.1 577033 D 262719 CDS YP_279251.1 71893805 3563563 577275..577709 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0783; neutrophil activating factor 577709 napA 3563563 napA Mycoplasma hyopneumoniae J neutrophil activating factor YP_279251.1 577275 D 262719 CDS YP_279252.1 71893806 3563564 577732..578601 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0564; ribosomal large subunit pseudouridine synthase D 578601 rluD 3563564 rluD Mycoplasma hyopneumoniae J ribosomal large subunit pseudouridine synthase D YP_279252.1 577732 D 262719 CDS YP_279253.1 71893807 3563565 complement(578662..579357) 1 NC_007295.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 579357 rplA 3563565 rplA Mycoplasma hyopneumoniae J 50S ribosomal protein L1 YP_279253.1 578662 R 262719 CDS YP_279254.1 71893808 3563566 complement(579359..579808) 1 NC_007295.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 579808 rplK 3563566 rplK Mycoplasma hyopneumoniae J 50S ribosomal protein L11 YP_279254.1 579359 R 262719 CDS YP_279255.1 71893809 3563567 580400..580897 1 NC_007295.1 hypothetical protein 580897 3563567 MHJ_0458 Mycoplasma hyopneumoniae J hypothetical protein YP_279255.1 580400 D 262719 CDS YP_279256.1 71893810 3563568 581234..581794 1 NC_007295.1 hypothetical protein 581794 3563568 MHJ_0459 Mycoplasma hyopneumoniae J hypothetical protein YP_279256.1 581234 D 262719 CDS YP_279257.1 71893811 3563569 582217..584469 1 NC_007295.1 hypothetical protein 584469 3563569 MHJ_0460 Mycoplasma hyopneumoniae J hypothetical protein YP_279257.1 582217 D 262719 CDS YP_279258.1 71893812 3563570 complement(584676..586037) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0260; leucyl aminopeptidase 586037 pepA 3563570 pepA Mycoplasma hyopneumoniae J leucyl aminopeptidase YP_279258.1 584676 R 262719 CDS YP_279259.1 71893813 3563571 complement(586199..586804) 1 NC_007295.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 586804 trmB 3563571 trmB Mycoplasma hyopneumoniae J tRNA (guanine-N(7)-)-methyltransferase YP_279259.1 586199 R 262719 CDS YP_279260.1 71893814 3563572 complement(586828..587634) 1 NC_007295.1 hypothetical protein 587634 3563572 MHJ_0463 Mycoplasma hyopneumoniae J hypothetical protein YP_279260.1 586828 R 262719 CDS YP_279261.1 71893815 3563573 complement(587760..588701) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 588701 3563573 MHJ_0464 Mycoplasma hyopneumoniae J hypothetical protein YP_279261.1 587760 R 262719 CDS YP_279262.1 71893816 3563574 complement(588706..590772) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; hypothetical protein 590772 3563574 MHJ_0465 Mycoplasma hyopneumoniae J hypothetical protein YP_279262.1 588706 R 262719 CDS YP_279263.1 71893817 3563842 complement(590769..591443) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1131; ABC transporter atp-binding protein 591443 3563842 MHJ_0466 Mycoplasma hyopneumoniae J ABC transporter atp-binding protein YP_279263.1 590769 R 262719 CDS YP_279264.1 71893818 3563843 complement(591486..593267) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG1277; hypothetical protein 593267 3563843 MHJ_0467 Mycoplasma hyopneumoniae J hypothetical protein YP_279264.1 591486 R 262719 CDS YP_279265.1 71893819 3563844 593469..594362 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0039; hypothetical protein 594362 3563844 MHJ_0468 Mycoplasma hyopneumoniae J hypothetical protein YP_279265.1 593469 D 262719 CDS YP_279266.1 71893820 3563845 594437..596173 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; GeneMark; Blastx; COG1080; TC:8.A.7.1.1; phosphoenolpyruvate-protein phosphotransferase 596173 ptsI 3563845 ptsI Mycoplasma hyopneumoniae J phosphoenolpyruvate-protein phosphotransferase YP_279266.1 594437 D 262719 CDS YP_279267.1 71893821 3563846 596348..597088 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0171; TC:3.A.1.123.4; NH(3)-dependent NAD+ synthetase 597088 nadE 3563846 nadE Mycoplasma hyopneumoniae J NH(3)-dependent NAD+ synthetase YP_279267.1 596348 D 262719 CDS YP_279268.1 71893822 3563847 597088..597816 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0217; hypothetical protein 597816 3563847 MHJ_0471 Mycoplasma hyopneumoniae J hypothetical protein YP_279268.1 597088 D 262719 CDS YP_279269.1 71893823 3563920 complement(597846..598475) 1 NC_007295.1 Enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 598475 pfs 3563920 pfs Mycoplasma hyopneumoniae J 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_279269.1 597846 R 262719 CDS YP_279270.2 161611219 3563378 complement(598483..599568) 1 NC_007295.1 catalyzes the reversible adenylation of nicotinate mononucleotide to nicotinic acid adenine dinucleotide; nicotinate-nucleotide adenylyltransferase 599568 nadD 3563378 nadD Mycoplasma hyopneumoniae J nicotinate-nucleotide adenylyltransferase YP_279270.2 598483 R 262719 CDS YP_279271.1 71893825 3563379 complement(599572..600492) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; GeneMark; Blastx; COG0561; hypothetical protein 600492 3563379 MHJ_0474 Mycoplasma hyopneumoniae J hypothetical protein YP_279271.1 599572 R 262719 CDS YP_279272.2 161611218 3563380 complement(601055..602428) 1 NC_007295.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 602428 atpD-1 3563380 atpD-1 Mycoplasma hyopneumoniae J ATP synthase F0F1 subunit beta YP_279272.2 601055 R 262719 CDS YP_279273.1 71893827 3563381 complement(602431..603969) 1 NC_007295.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 603969 atpA 3563381 atpA Mycoplasma hyopneumoniae J ATP synthase F0F1 subunit alpha YP_279273.1 602431 R 262719 CDS YP_279274.1 71893828 3563382 complement(603969..606119) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 606119 3563382 MHJ_0477 Mycoplasma hyopneumoniae J hypothetical protein YP_279274.1 603969 R 262719 CDS YP_279275.1 71893829 3563383 complement(606196..606666) 1 NC_007295.1 hypothetical protein 606666 3563383 MHJ_0478 Mycoplasma hyopneumoniae J hypothetical protein YP_279275.1 606196 R 262719 CDS YP_279276.1 71893830 3563384 complement(606667..607536) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; hypothetical protein 607536 3563384 MHJ_0479 Mycoplasma hyopneumoniae J hypothetical protein YP_279276.1 606667 R 262719 CDS YP_279277.1 71893831 3563385 complement(607552..608118) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; hypothetical protein 608118 3563385 MHJ_0480 Mycoplasma hyopneumoniae J hypothetical protein YP_279277.1 607552 R 262719 CDS YP_279278.1 71893832 3563386 complement(608131..609711) 1 NC_007295.1 hypothetical protein 609711 3563386 MHJ_0481 Mycoplasma hyopneumoniae J hypothetical protein YP_279278.1 608131 R 262719 CDS YP_279279.1 71893833 3563387 610004..610807 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0561; hypothetical protein 610807 3563387 MHJ_0482 Mycoplasma hyopneumoniae J hypothetical protein YP_279279.1 610004 D 262719 CDS YP_279280.1 71893834 3563388 complement(610852..611556) 1 NC_007295.1 hypothetical protein 611556 3563388 MHJ_0483 Mycoplasma hyopneumoniae J hypothetical protein YP_279280.1 610852 R 262719 CDS YP_279281.1 71893835 3563389 complement(611657..613111) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG2239; TC:9.A.19.1.1; MG2+ transport protein 613111 mgtE 3563389 mgtE Mycoplasma hyopneumoniae J MG2+ transport protein YP_279281.1 611657 R 262719 CDS YP_279282.1 71893836 3563390 complement(613127..613738) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; GeneMark; Blastx; COG1624; hypothetical protein 613738 3563390 MHJ_0485 Mycoplasma hyopneumoniae J hypothetical protein YP_279282.1 613127 R 262719 CDS YP_279283.1 71893837 3563391 complement(613971..616610) 1 NC_007295.1 hypothetical protein 616610 3563391 MHJ_0486 Mycoplasma hyopneumoniae J hypothetical protein YP_279283.1 613971 R 262719 CDS YP_279284.1 71893838 3563661 617070..618284 1 NC_007295.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 618284 pgk 3563661 pgk Mycoplasma hyopneumoniae J phosphoglycerate kinase YP_279284.1 617070 D 262719 CDS YP_279285.1 71893839 3563862 618459..618713 1 NC_007295.1 hypothetical protein 618713 3563862 MHJ_0488 Mycoplasma hyopneumoniae J hypothetical protein YP_279285.1 618459 D 262719 CDS YP_279286.1 71893840 3563662 618830..620812 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1299; TC:4.A.2.1.1; PTS system fructose-specific transporter subunit IIABC 620812 fruA 3563662 fruA Mycoplasma hyopneumoniae J PTS system fructose-specific transporter subunit IIABC YP_279286.1 618830 D 262719 CDS YP_279287.1 71893841 3563663 620812..621096 1 NC_007295.1 hypothetical protein 621096 3563663 MHJ_0490 Mycoplasma hyopneumoniae J hypothetical protein YP_279287.1 620812 D 262719 CDS YP_279288.1 71893842 3563909 621108..622031 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1482; mannose-6-phosphate isomerase 622031 3563909 MHJ_0491 Mycoplasma hyopneumoniae J mannose-6-phosphate isomerase YP_279288.1 621108 D 262719 CDS YP_279289.1 71893843 3563910 622335..623993 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1057; ISMHp1 transposase 623993 3563910 MHJ_0492 Mycoplasma hyopneumoniae J ISMHp1 transposase YP_279289.1 622335 D 262719 CDS YP_279290.1 71893844 3563911 complement(624355..629991) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; P216 surface protein 629991 3563911 MHJ_0493 Mycoplasma hyopneumoniae J P216 surface protein YP_279290.1 624355 R 262719 CDS YP_279291.1 71893845 3563912 complement(630118..634401) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; TC:1.A.1.5.2; p76 membrane protein precursor 634401 3563912 MHJ_0494 Mycoplasma hyopneumoniae J p76 membrane protein precursor YP_279291.1 630118 R 262719 CDS YP_279292.1 71893846 3563913 complement(634692..635918) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0477; TC:2.A.1.2.5; hypothetical protein 635918 3563913 MHJ_0495 Mycoplasma hyopneumoniae J hypothetical protein YP_279292.1 634692 R 262719 CDS YP_279293.1 71893847 3563914 complement(635956..637584) 1 NC_007295.1 hypothetical protein 637584 3563914 MHJ_0496 Mycoplasma hyopneumoniae J hypothetical protein YP_279293.1 635956 R 262719 CDS YP_279294.1 71893848 3563915 complement(637586..638548) 1 NC_007295.1 AS-AR; AsnRS2; similar to asparaginyl-tRNA synthetase but lacking the N-terminal anticodon-binding site; the enzyme from Pyrococcus converts aspartic acid into asparagine; asparagine synthetase A 638548 3563915 MHJ_0497 Mycoplasma hyopneumoniae J asparagine synthetase A YP_279294.1 637586 R 262719 CDS YP_279295.1 71893849 3563271 complement(638850..641177) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; oligopeptide ABC transporter ATP-binding protein 641177 oppF 3563271 oppF Mycoplasma hyopneumoniae J oligopeptide ABC transporter ATP-binding protein YP_279295.1 638850 R 262719 CDS YP_279296.1 71893850 3563272 complement(641174..642226) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0444; TC:3.A.1.5.2; oligopeptide ABC transporte ATP-binding protein 642226 oppD 3563272 oppD Mycoplasma hyopneumoniae J oligopeptide ABC transporte ATP-binding protein YP_279296.1 641174 R 262719 CDS YP_279297.1 71893851 3563273 complement(642226..643383) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1173; oligopeptide transport system permease 643383 oppC 3563273 oppC Mycoplasma hyopneumoniae J oligopeptide transport system permease YP_279297.1 642226 R 262719 CDS YP_279298.1 71893852 3563274 complement(643376..644410) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0601; TC:3.A.1.5.2; oligopeptide ABC transporter permease 644410 oppB 3563274 oppB Mycoplasma hyopneumoniae J oligopeptide ABC transporter permease YP_279298.1 643376 R 262719 CDS YP_279299.1 71893853 3563275 complement(644416..647232) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; lipoprotein 647232 3563275 MHJ_0502 Mycoplasma hyopneumoniae J lipoprotein YP_279299.1 644416 R 262719 CDS YP_279300.1 71893854 3563276 648264..649184 1 NC_007295.1 unlike PdhC proteins from other organisms, some Mycoplasma lack an N-terminal lipoyl domain; in Mycoplasma hyopneumonia the PdhD proteins contains the lipoyl domain; dihydrolipoamide acetyltransferase 649184 pdhC 3563276 pdhC Mycoplasma hyopneumoniae J dihydrolipoamide acetyltransferase YP_279300.1 648264 D 262719 CDS YP_279301.1 71893855 3563277 649184..651031 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1249; TC:3.D.1.1.1; dihydrolipoamide dehydrogenase 651031 pdhD 3563277 pdhD Mycoplasma hyopneumoniae J dihydrolipoamide dehydrogenase YP_279301.1 649184 D 262719 CDS YP_279302.1 71893856 3563728 complement(651263..652471) 1 NC_007295.1 Enables the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation; acetate kinase 652471 ackA 3563728 ackA Mycoplasma hyopneumoniae J acetate kinase YP_279302.1 651263 R 262719 CDS YP_279303.1 71893857 3563729 complement(652471..653424) 1 NC_007295.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 653424 eutD 3563729 eutD Mycoplasma hyopneumoniae J phosphotransacetylase YP_279303.1 652471 R 262719 CDS YP_279304.1 71893858 3563730 complement(653544..654557) 1 NC_007295.1 hypothetical protein 654557 3563730 MHJ_0507 Mycoplasma hyopneumoniae J hypothetical protein YP_279304.1 653544 R 262719 CDS YP_279305.1 71893859 3563731 complement(654562..654981) 1 NC_007295.1 hypothetical protein 654981 3563731 MHJ_0508 Mycoplasma hyopneumoniae J hypothetical protein YP_279305.1 654562 R 262719 CDS YP_279306.1 71893860 3563732 complement(655206..655577) 1 NC_007295.1 hypothetical protein 655577 3563732 MHJ_0509 Mycoplasma hyopneumoniae J hypothetical protein YP_279306.1 655206 R 262719 CDS YP_279307.1 71893861 3563733 complement(655579..656391) 1 NC_007295.1 hypothetical protein 656391 3563733 MHJ_0510 Mycoplasma hyopneumoniae J hypothetical protein YP_279307.1 655579 R 262719 CDS YP_279308.1 71893862 3563734 656714..657973 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG4213; hypothetical protein 657973 3563734 MHJ_0511 Mycoplasma hyopneumoniae J hypothetical protein YP_279308.1 656714 D 262719 CDS YP_279309.1 71893863 3563735 658093..659637 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1129; xylose ABC transporter ATP-binding protein 659637 xylG 3563735 xylG Mycoplasma hyopneumoniae J xylose ABC transporter ATP-binding protein YP_279309.1 658093 D 262719 CDS YP_279310.1 71893864 3563736 659637..660887 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG4214; TC:3.A.1.2.5; xylose ABC transporter permease 660887 xylH 3563736 xylH Mycoplasma hyopneumoniae J xylose ABC transporter permease YP_279310.1 659637 D 262719 CDS YP_279311.1 71893865 3563737 660892..661455 1 NC_007295.1 hypothetical protein 661455 3563737 MHJ_0514 Mycoplasma hyopneumoniae J hypothetical protein YP_279311.1 660892 D 262719 CDS YP_279312.1 71893866 3563660 661466..662335 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1940; glucokinase 662335 glck 3563660 glck Mycoplasma hyopneumoniae J glucokinase YP_279312.1 661466 D 262719 CDS YP_279313.1 71893867 3563873 complement(662575..662826) 1 NC_007295.1 hypothetical protein 662826 3563873 MHJ_0516 Mycoplasma hyopneumoniae J hypothetical protein YP_279313.1 662575 R 262719 CDS YP_279314.1 71893868 3563874 662913..664571 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; ISMHp1 transposase 664571 3563874 MHJ_0517 Mycoplasma hyopneumoniae J ISMHp1 transposase YP_279314.1 662913 D 262719 CDS YP_279315.1 71893869 3563875 complement(664639..665460) 1 NC_007295.1 hypothetical protein 665460 3563875 MHJ_0518 Mycoplasma hyopneumoniae J hypothetical protein YP_279315.1 664639 R 262719 CDS YP_279316.1 71893870 3563876 complement(665604..666467) 1 NC_007295.1 hypothetical protein 666467 3563876 MHJ_0519 Mycoplasma hyopneumoniae J hypothetical protein YP_279316.1 665604 R 262719 CDS YP_279317.1 71893871 3563877 complement(666526..666897) 1 NC_007295.1 hypothetical protein 666897 3563877 MHJ_0520 Mycoplasma hyopneumoniae J hypothetical protein YP_279317.1 666526 R 262719 CDS YP_279318.1 71893872 3563878 complement(667156..667428) 1 NC_007295.1 hypothetical protein 667428 3563878 MHJ_0521 Mycoplasma hyopneumoniae J hypothetical protein YP_279318.1 667156 R 262719 CDS YP_279319.1 71893873 3563879 complement(667980..669824) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1164; oligoendopeptidase F 669824 pepF 3563879 pepF Mycoplasma hyopneumoniae J oligoendopeptidase F YP_279319.1 667980 R 262719 CDS YP_279320.1 71893874 3563880 669939..675953 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; hypothetical protein 675953 3563880 MHJ_0523 Mycoplasma hyopneumoniae J hypothetical protein YP_279320.1 669939 D 262719 CDS YP_279321.1 71893875 3563881 complement(676055..677263) 1 NC_007295.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 677263 tuf 3563881 tuf Mycoplasma hyopneumoniae J elongation factor Tu YP_279321.1 676055 R 262719 CDS YP_279322.1 71893876 3563882 complement(677562..680180) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; GeneMark; Blastx; COG0466; heat shock ATP-dependent protease 680180 lon 3563882 lon Mycoplasma hyopneumoniae J heat shock ATP-dependent protease YP_279322.1 677562 R 262719 CDS YP_279323.1 71893877 3563883 complement(680345..681040) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; hypothetical protein 681040 3563883 MHJ_0526 Mycoplasma hyopneumoniae J hypothetical protein YP_279323.1 680345 R 262719 CDS YP_279324.1 71893878 3563884 complement(681043..681657) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0035; uracil phosphoribosyltransferase 681657 upp 3563884 upp Mycoplasma hyopneumoniae J uracil phosphoribosyltransferase YP_279324.1 681043 R 262719 CDS YP_279325.1 71893879 3563885 complement(681750..682415) 1 NC_007295.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 682415 deoC 3563885 deoC Mycoplasma hyopneumoniae J deoxyribose-phosphate aldolase YP_279325.1 681750 R 262719 CDS YP_279326.1 71893880 3563886 682812..685418 1 NC_007295.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 685418 gyrA 3563886 gyrA Mycoplasma hyopneumoniae J DNA gyrase subunit A YP_279326.1 682812 D 262719 CDS YP_279327.1 71893881 3563887 complement(685469..685897) 1 NC_007295.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 685897 pmsR 3563887 pmsR Mycoplasma hyopneumoniae J methionine sulfoxide reductase B YP_279327.1 685469 R 262719 CDS YP_279328.1 71893882 3563888 complement(685973..686437) 1 NC_007295.1 hypothetical protein 686437 3563888 MHJ_0531 Mycoplasma hyopneumoniae J hypothetical protein YP_279328.1 685973 R 262719 CDS YP_279329.1 71893883 3563889 complement(686494..687783) 1 NC_007295.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 687783 pgi 3563889 pgi Mycoplasma hyopneumoniae J glucose-6-phosphate isomerase YP_279329.1 686494 R 262719 CDS YP_279330.1 71893884 3563890 complement(687922..692328) 1 NC_007295.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 692328 polC 3563890 polC Mycoplasma hyopneumoniae J DNA polymerase III PolC YP_279330.1 687922 R 262719 CDS YP_279331.1 71893885 3563891 complement(692362..693288) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0575; phosphatidate cytidylyltransferase synthase 693288 3563891 MHJ_0534 Mycoplasma hyopneumoniae J phosphatidate cytidylyltransferase synthase YP_279331.1 692362 R 262719 CDS YP_279332.1 71893886 3563892 complement(693290..693814) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0233; ribosome recycling factor 693814 frr 3563892 frr Mycoplasma hyopneumoniae J ribosome recycling factor YP_279332.1 693290 R 262719 CDS YP_279333.1 71893887 3563893 complement(693854..694564) 1 NC_007295.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 694564 pyrH 3563893 pyrH Mycoplasma hyopneumoniae J uridylate kinase YP_279333.1 693854 R 262719 CDS YP_279334.1 71893888 3563894 694685..696073 1 NC_007295.1 hypothetical protein 696073 3563894 MHJ_0537 Mycoplasma hyopneumoniae J hypothetical protein YP_279334.1 694685 D 262719 CDS YP_279335.1 71893889 3563895 696109..696639 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1214; hypothetical protein 696639 3563895 MHJ_0538 Mycoplasma hyopneumoniae J hypothetical protein YP_279335.1 696109 D 262719 CDS YP_279336.1 71893890 3563896 complement(696785..698443) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; ISMHp1 transposase 698443 3563896 MHJ_0539 Mycoplasma hyopneumoniae J ISMHp1 transposase YP_279336.1 696785 R 262719 CDS YP_279337.1 71893891 3563897 complement(698614..699465) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 699465 3563897 MHJ_0540 Mycoplasma hyopneumoniae J hypothetical protein YP_279337.1 698614 R 262719 CDS YP_279338.1 71893892 3563898 complement(699486..701156) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0687; hypothetical protein 701156 3563898 MHJ_0541 Mycoplasma hyopneumoniae J hypothetical protein YP_279338.1 699486 R 262719 CDS YP_279339.1 71893893 3563899 complement(701186..702010) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1177; TC:3.A.1.11.1; spermidine/putrescine ABC transporter permease 702010 potC 3563899 potC Mycoplasma hyopneumoniae J spermidine/putrescine ABC transporter permease YP_279339.1 701186 R 262719 CDS YP_279340.1 71893894 3563900 complement(702003..702812) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1176; TC:3.A.1.11.1; spermidine/putrescine ABC transporter permease 702812 potB 3563900 potB Mycoplasma hyopneumoniae J spermidine/putrescine ABC transporter permease YP_279340.1 702003 R 262719 CDS YP_279341.1 71893895 3563308 complement(702850..704184) 1 NC_007295.1 identified by sequence similarity; ORF located using GeneMark; Blastx; COG3842; spermidine/putrescine transport system ATP-binding protein 704184 potA 3563308 potA Mycoplasma hyopneumoniae J spermidine/putrescine transport system ATP-binding protein YP_279341.1 702850 R 262719 CDS YP_279343.1 71893897 3563310 705179..705439 1 NC_007295.1 hypothetical protein 705439 3563310 MHJ_0546 Mycoplasma hyopneumoniae J hypothetical protein YP_279343.1 705179 D 262719 CDS YP_279344.1 71893898 3563311 705470..706879 1 NC_007295.1 hypothetical protein 706879 3563311 MHJ_0547 Mycoplasma hyopneumoniae J hypothetical protein YP_279344.1 705470 D 262719 CDS YP_279345.1 71893899 3563312 complement(706960..707655) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0569; potassium uptake protein 707655 ktrA 3563312 ktrA Mycoplasma hyopneumoniae J potassium uptake protein YP_279345.1 706960 R 262719 CDS YP_279346.1 71893900 3563313 707953..709437 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0168; TC:2.A.38.4.1; potassium uptake protein 709437 ktrB 3563313 ktrB Mycoplasma hyopneumoniae J potassium uptake protein YP_279346.1 707953 D 262719 CDS YP_279347.1 71893901 3563314 complement(709745..711403) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; ISMHp1 transposase 711403 3563314 MHJ_0550 Mycoplasma hyopneumoniae J ISMHp1 transposase YP_279347.1 709745 R 262719 CDS YP_279348.1 71893902 3563315 complement(711672..715697) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 715697 3563315 MHJ_0551 Mycoplasma hyopneumoniae J hypothetical protein YP_279348.1 711672 R 262719 CDS YP_279349.1 71893903 3563316 complement(716116..716544) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG4668; PTS system mannitol-specific transporter subunit IIA 716544 mtlF 3563316 mtlF Mycoplasma hyopneumoniae J PTS system mannitol-specific transporter subunit IIA YP_279349.1 716116 R 262719 CDS YP_279350.1 71893904 3563317 complement(716535..717647) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0246; mannitol-1-phosphate 5-dehydrogenase 717647 mtlD 3563317 mtlD Mycoplasma hyopneumoniae J mannitol-1-phosphate 5-dehydrogenase YP_279350.1 716535 R 262719 CDS YP_279351.1 71893905 3563318 complement(717638..719113) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG2213; TC:4.A.2.1.2; PTS system mannitol-specific transporter subunit IIBC 719113 mtlA 3563318 mtlA Mycoplasma hyopneumoniae J PTS system mannitol-specific transporter subunit IIBC YP_279351.1 717638 R 262719 CDS YP_279352.1 71893906 3563319 719140..719925 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG1737; hypothetical protein 719925 3563319 MHJ_0555 Mycoplasma hyopneumoniae J hypothetical protein YP_279352.1 719140 D 262719 CDS YP_279353.1 71893907 3563320 complement(720244..721758) 1 NC_007295.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 721758 ulaA 3563320 ulaA Mycoplasma hyopneumoniae J PTS system ascorbate-specific transporter subunit IIC YP_279353.1 720244 R 262719 CDS YP_279354.1 71893908 3563321 complement(721774..722049) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG3414; PTS system galactitol-specific transporter subunit IIB 722049 3563321 MHJ_0557 Mycoplasma hyopneumoniae J PTS system galactitol-specific transporter subunit IIB YP_279354.1 721774 R 262719 CDS YP_279355.1 71893909 3563322 complement(722039..722455) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; PTS system transporter subunit IIA 722455 3563322 MHJ_0558 Mycoplasma hyopneumoniae J PTS system transporter subunit IIA YP_279355.1 722039 R 262719 CDS YP_279356.1 71893910 3563323 complement(722796..723452) 1 NC_007295.1 hypothetical protein 723452 3563323 MHJ_0559 Mycoplasma hyopneumoniae J hypothetical protein YP_279356.1 722796 R 262719 CDS YP_279357.1 71893911 3563324 complement(724067..724723) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0036; d-ribulose-5-phosphate 3 epimerase 724723 3563324 MHJ_0560 Mycoplasma hyopneumoniae J d-ribulose-5-phosphate 3 epimerase YP_279357.1 724067 R 262719 CDS YP_279358.1 71893912 3563325 complement(725485..727164) 1 NC_007295.1 hypothetical protein 727164 3563325 MHJ_0561 Mycoplasma hyopneumoniae J hypothetical protein YP_279358.1 725485 R 262719 CDS YP_279359.1 71893913 3563326 complement(727226..727675) 1 NC_007295.1 hypothetical protein 727675 3563326 MHJ_0562 Mycoplasma hyopneumoniae J hypothetical protein YP_279359.1 727226 R 262719 CDS YP_279360.1 71893914 3563328 729302..730960 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; ISMHp1 transposase 730960 3563328 MHJ_0564 Mycoplasma hyopneumoniae J ISMHp1 transposase YP_279360.1 729302 D 262719 CDS YP_279361.1 71893915 3563329 complement(731395..733074) 1 NC_007295.1 hypothetical protein 733074 3563329 MHJ_0565 Mycoplasma hyopneumoniae J hypothetical protein YP_279361.1 731395 R 262719 CDS YP_279362.1 71893916 3563330 complement(733136..733585) 1 NC_007295.1 hypothetical protein 733585 3563330 MHJ_0566 Mycoplasma hyopneumoniae J hypothetical protein YP_279362.1 733136 R 262719 CDS YP_279363.1 71893917 3563332 735198..735866 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0265; hypothetical protein 735866 3563332 MHJ_0568 Mycoplasma hyopneumoniae J hypothetical protein YP_279363.1 735198 D 262719 CDS YP_279364.1 71893918 3563333 complement(735996..736223) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1249; hypothetical protein 736223 3563333 MHJ_0569 Mycoplasma hyopneumoniae J hypothetical protein YP_279364.1 735996 R 262719 CDS YP_279365.1 71893919 3563334 complement(736231..736926) 1 NC_007295.1 hypothetical protein 736926 3563334 MHJ_0570 Mycoplasma hyopneumoniae J hypothetical protein YP_279365.1 736231 R 262719 CDS YP_279366.1 71893920 3563335 complement(736992..738881) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; hypothetical protein 738881 3563335 MHJ_0571 Mycoplasma hyopneumoniae J hypothetical protein YP_279366.1 736992 R 262719 CDS YP_279367.1 71893921 3563336 complement(739135..740499) 1 NC_007295.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 740499 pdhD-1 3563336 pdhD-1 Mycoplasma hyopneumoniae J dihydrolipoamide dehydrogenase YP_279367.1 739135 R 262719 CDS YP_279368.1 71893922 3563337 740682..741842 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG1820; N-acetylglucosamine-6-phosphate deacetylase 741842 nagA 3563337 nagA Mycoplasma hyopneumoniae J N-acetylglucosamine-6-phosphate deacetylase YP_279368.1 740682 D 262719 CDS YP_279369.1 71893923 3563338 complement(741897..742718) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0191; fructose-bisphosphate aldolase 742718 fba-1 3563338 fba-1 Mycoplasma hyopneumoniae J fructose-bisphosphate aldolase YP_279369.1 741897 R 262719 CDS YP_279370.1 71893924 3563339 complement(742727..744436) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1263; TC:4.A.1.1.2; PTS system N-acetylglucosamine-specific transporter subunit IIABC 744436 3563339 MHJ_0575 Mycoplasma hyopneumoniae J PTS system N-acetylglucosamine-specific transporter subunit IIABC YP_279370.1 742727 R 262719 CDS YP_279371.1 71893925 3563340 complement(744532..745296) 1 NC_007295.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 745296 nagB 3563340 nagB Mycoplasma hyopneumoniae J glucosamine-6-phosphate deaminase YP_279371.1 744532 R 262719 CDS YP_279372.1 71893926 3563341 745664..746281 1 NC_007295.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 746281 rpsD 3563341 rpsD Mycoplasma hyopneumoniae J 30S ribosomal protein S4 YP_279372.1 745664 D 262719 CDS YP_279373.1 71893927 3563342 746395..746829 1 NC_007295.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B 746829 rpiB 3563342 rpiB Mycoplasma hyopneumoniae J ribose-5-phosphate isomerase B YP_279373.1 746395 D 262719 CDS YP_279374.1 71893928 3563343 746829..747656 1 NC_007295.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 747656 fpg 3563343 fpg Mycoplasma hyopneumoniae J formamidopyrimidine-DNA glycosylase YP_279374.1 746829 D 262719 CDS YP_279375.1 71893929 3563344 complement(747767..748438) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0510; hypothetical protein 748438 3563344 MHJ_0580 Mycoplasma hyopneumoniae J hypothetical protein YP_279375.1 747767 R 262719 CDS YP_279376.1 71893930 3563345 complement(748465..749598) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; membrane nuclease, lipoprotein 749598 mnuA 3563345 mnuA Mycoplasma hyopneumoniae J membrane nuclease, lipoprotein YP_279376.1 748465 R 262719 CDS YP_279377.1 71893931 3563346 complement(749620..750504) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0258; 5'-3' exonuclease 750504 3563346 MHJ_0582 Mycoplasma hyopneumoniae J 5'-3' exonuclease YP_279377.1 749620 R 262719 CDS YP_279378.1 71893932 3563505 complement(750507..753452) 1 NC_007295.1 catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.; DNA polymerase III DnaE 753452 dnaE 3563505 dnaE Mycoplasma hyopneumoniae J DNA polymerase III DnaE YP_279378.1 750507 R 262719 CDS YP_279379.1 71893933 3563506 complement(753503..753832) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0858; ribosome-binding factor A 753832 rbfA 3563506 rbfA Mycoplasma hyopneumoniae J ribosome-binding factor A YP_279379.1 753503 R 262719 CDS YP_279380.1 71893934 3563507 complement(753844..755643) 1 NC_007295.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 755643 infB 3563507 infB Mycoplasma hyopneumoniae J translation initiation factor IF-2 YP_279380.1 753844 R 262719 CDS YP_279381.1 71893935 3563508 complement(755910..757763) 1 NC_007295.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 757763 nusA 3563508 nusA Mycoplasma hyopneumoniae J transcription elongation factor NusA YP_279381.1 755910 R 262719 CDS YP_279382.1 71893936 3563509 758275..760281 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1523; pullulanase 760281 pulA 3563509 pulA Mycoplasma hyopneumoniae J pullulanase YP_279382.1 758275 D 262719 CDS YP_279383.1 71893937 3563510 complement(760382..761527) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0579; glycerol-3-phosphate dehydrogenase 761527 glpD 3563510 glpD Mycoplasma hyopneumoniae J glycerol-3-phosphate dehydrogenase YP_279383.1 760382 R 262719 CDS YP_279384.1 71893938 3563511 complement(762018..763757) 1 NC_007295.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 763757 thrS 3563511 thrS Mycoplasma hyopneumoniae J threonyl-tRNA synthetase YP_279384.1 762018 R 262719 CDS YP_279385.1 71893939 3563512 complement(763761..764747) 1 NC_007295.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 764747 trpS 3563512 trpS Mycoplasma hyopneumoniae J tryptophanyl-tRNA synthetase YP_279385.1 763761 R 262719 CDS YP_279386.1 71893940 3563513 764805..765167 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1264; PTS system glucose-specific transporter subunit IIB 765167 3563513 MHJ_0591 Mycoplasma hyopneumoniae J PTS system glucose-specific transporter subunit IIB YP_279386.1 764805 D 262719 CDS YP_279387.1 71893941 3563514 765210..768404 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1112; ATP-binding protein 768404 3563514 MHJ_0592 Mycoplasma hyopneumoniae J ATP-binding protein YP_279387.1 765210 D 262719 CDS YP_279388.1 71893942 3563515 768394..769137 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1039; ribonuclease HII 769137 rnhB 3563515 rnhB Mycoplasma hyopneumoniae J ribonuclease HII YP_279388.1 768394 D 262719 CDS YP_279389.1 71893943 3563516 769175..769423 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG3763; hypothetical protein 769423 3563516 MHJ_0594 Mycoplasma hyopneumoniae J hypothetical protein YP_279389.1 769175 D 262719 CDS YP_279390.1 71893944 3563517 769431..770948 1 NC_007295.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 770948 pgm 3563517 pgm Mycoplasma hyopneumoniae J phosphoglyceromutase YP_279390.1 769431 D 262719 CDS YP_279391.1 71893945 3563518 771095..772486 1 NC_007295.1 hypothetical protein 772486 3563518 MHJ_0596 Mycoplasma hyopneumoniae J hypothetical protein YP_279391.1 771095 D 262719 CDS YP_279392.1 71893946 3563519 772530..774245 1 NC_007295.1 hypothetical protein 774245 3563519 MHJ_0597 Mycoplasma hyopneumoniae J hypothetical protein YP_279392.1 772530 D 262719 CDS YP_279393.1 71893947 3563520 774413..775837 1 NC_007295.1 hypothetical protein 775837 3563520 MHJ_0598 Mycoplasma hyopneumoniae J hypothetical protein YP_279393.1 774413 D 262719 CDS YP_279394.1 71893948 3563521 775914..777599 1 NC_007295.1 hypothetical protein 777599 3563521 MHJ_0599 Mycoplasma hyopneumoniae J hypothetical protein YP_279394.1 775914 D 262719 CDS YP_279395.1 71893949 3563522 777843..779600 1 NC_007295.1 hypothetical protein 779600 3563522 MHJ_0600 Mycoplasma hyopneumoniae J hypothetical protein YP_279395.1 777843 D 262719 CDS YP_279396.1 71893950 3563523 779795..781192 1 NC_007295.1 hypothetical protein 781192 3563523 MHJ_0601 Mycoplasma hyopneumoniae J hypothetical protein YP_279396.1 779795 D 262719 CDS YP_279397.1 71893951 3563524 781331..783037 1 NC_007295.1 hypothetical protein 783037 3563524 MHJ_0602 Mycoplasma hyopneumoniae J hypothetical protein YP_279397.1 781331 D 262719 CDS YP_279398.1 71893952 3563525 783428..784297 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG1481; hypothetical protein 784297 3563525 MHJ_0603 Mycoplasma hyopneumoniae J hypothetical protein YP_279398.1 783428 D 262719 CDS YP_279399.1 71893953 3563526 784299..785087 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0670; hypothetical protein 785087 3563526 MHJ_0604 Mycoplasma hyopneumoniae J hypothetical protein YP_279399.1 784299 D 262719 CDS YP_279400.1 71893954 3563527 785138..785695 1 NC_007295.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 785695 ppa 3563527 ppa Mycoplasma hyopneumoniae J inorganic pyrophosphatase YP_279400.1 785138 D 262719 CDS YP_279401.1 71893955 3563528 785962..787305 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1744; ABC transporter xylose-binding lipoprotein 787305 xylF 3563528 xylF Mycoplasma hyopneumoniae J ABC transporter xylose-binding lipoprotein YP_279401.1 785962 D 262719 CDS YP_279402.1 71893956 3563529 787470..788981 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG3845; sugar ABC transporter ATP-binding protein 788981 3563529 MHJ_0607 Mycoplasma hyopneumoniae J sugar ABC transporter ATP-binding protein YP_279402.1 787470 D 262719 CDS YP_279403.1 71893957 3563530 788984..790696 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG4603; TC:3.A.1.2.6; ABC transporter protein 790696 3563530 MHJ_0608 Mycoplasma hyopneumoniae J ABC transporter protein YP_279403.1 788984 D 262719 CDS YP_279404.1 71893958 3563531 790702..791607 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1079; TC:3.A.1.2.1; sugar ABC transporter permease 791607 3563531 MHJ_0609 Mycoplasma hyopneumoniae J sugar ABC transporter permease YP_279404.1 790702 D 262719 CDS YP_279405.1 71893959 3563532 791666..792220 1 NC_007295.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 792220 tdk 3563532 tdk Mycoplasma hyopneumoniae J thymidine kinase YP_279405.1 791666 D 262719 CDS YP_279406.1 71893960 3563533 792469..792738 1 NC_007295.1 identified by sequence similarity; ORF located using GeneMark; Blastx; COG1925; phosphocarrier protein HPr 792738 ptsH 3563533 ptsH Mycoplasma hyopneumoniae J phosphocarrier protein HPr YP_279406.1 792469 D 262719 CDS YP_279407.1 71893961 3563534 792932..793552 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG2190; TC:9.A.19.1.1; hypothetical protein 793552 3563534 MHJ_0612 Mycoplasma hyopneumoniae J hypothetical protein YP_279407.1 792932 D 262719 CDS YP_279408.1 71893962 3563535 complement(793881..796259) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 796259 3563535 MHJ_0613 Mycoplasma hyopneumoniae J hypothetical protein YP_279408.1 793881 R 262719 CDS YP_279409.1 71893963 3563536 complement(796360..798450) 1 NC_007295.1 hypothetical protein 798450 3563536 MHJ_0614 Mycoplasma hyopneumoniae J hypothetical protein YP_279409.1 796360 R 262719 CDS YP_279410.1 71893964 3563537 complement(798962..799951) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0270; cytosine specific DNA methyltransferase 799951 ddem 3563537 ddem Mycoplasma hyopneumoniae J cytosine specific DNA methyltransferase YP_279410.1 798962 R 262719 CDS YP_279411.1 71893965 3563538 complement(800252..800671) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0802; hypothetical protein 800671 3563538 MHJ_0616 Mycoplasma hyopneumoniae J hypothetical protein YP_279411.1 800252 R 262719 CDS YP_279412.1 71893966 3563539 complement(800678..804916) 1 NC_007295.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 804916 rpoC 3563539 rpoC Mycoplasma hyopneumoniae J DNA-directed RNA polymerase subunit beta' YP_279412.1 800678 R 262719 CDS YP_279413.1 71893967 3563540 complement(804973..808635) 1 NC_007295.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 808635 rpoB 3563540 rpoB Mycoplasma hyopneumoniae J DNA-directed RNA polymerase subunit beta YP_279413.1 804973 R 262719 CDS YP_279414.1 71893968 3563541 complement(808850..809215) 1 NC_007295.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 809215 rplL 3563541 rplL Mycoplasma hyopneumoniae J 50S ribosomal protein L7/L12 YP_279414.1 808850 R 262719 CDS YP_279415.2 161611217 3563397 complement(809227..809724) 1 NC_007295.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 809724 rplJ 3563397 rplJ Mycoplasma hyopneumoniae J 50S ribosomal protein L10 YP_279415.2 809227 R 262719 CDS YP_279416.1 71893970 3563398 810113..812653 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; hypothetical protein 812653 3563398 MHJ_0621 Mycoplasma hyopneumoniae J hypothetical protein YP_279416.1 810113 D 262719 CDS YP_279417.1 71893971 3563399 812724..815144 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; lipoprotein 815144 3563399 MHJ_0622 Mycoplasma hyopneumoniae J lipoprotein YP_279417.1 812724 D 262719 CDS YP_279418.1 71893972 3563400 complement(815173..816822) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0338; DNA adenine methylase 816822 dam 3563400 dam Mycoplasma hyopneumoniae J DNA adenine methylase YP_279418.1 815173 R 262719 CDS YP_279419.1 71893973 3563401 817472..819085 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1132; TC:3.A.1.111.2; ABC transporter ATP-binding protein Pr1 819085 3563401 MHJ_0624 Mycoplasma hyopneumoniae J ABC transporter ATP-binding protein Pr1 YP_279419.1 817472 D 262719 CDS YP_279420.1 71893974 3563402 819096..820709 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1132; TC:3.A.1.123.1; ABC transporter ATP-binding protein Pr2 820709 3563402 MHJ_0625 Mycoplasma hyopneumoniae J ABC transporter ATP-binding protein Pr2 YP_279420.1 819096 D 262719 CDS YP_279421.1 71893975 3563404 complement(821450..823813) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0286; hypothetical protein 823813 3563404 MHJ_0627 Mycoplasma hyopneumoniae J hypothetical protein YP_279421.1 821450 R 262719 CDS YP_279422.1 71893976 3563405 824162..825757 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1132; TC:3.A.1.111.1; ABC transporter ATP-binding Pr1-like proten 825757 3563405 MHJ_0628 Mycoplasma hyopneumoniae J ABC transporter ATP-binding Pr1-like proten YP_279422.1 824162 D 262719 CDS YP_279423.1 71893977 3563406 825799..827382 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1132; TC:3.A.1.112.4; ABC transporter ATP-binding Pr2-like protein 827382 3563406 MHJ_0629 Mycoplasma hyopneumoniae J ABC transporter ATP-binding Pr2-like protein YP_279423.1 825799 D 262719 CDS YP_279424.1 71893978 3563407 complement(827470..829278) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 829278 3563407 MHJ_0630 Mycoplasma hyopneumoniae J hypothetical protein YP_279424.1 827470 R 262719 CDS YP_279425.1 71893979 3563408 complement(829353..831089) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0737; 5'-nucleotidase precursor 831089 3563408 MHJ_0631 Mycoplasma hyopneumoniae J 5'-nucleotidase precursor YP_279425.1 829353 R 262719 CDS YP_279426.1 71893980 3563409 831839..832576 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0204; 1-acyl-sn-glycerol-3-phosphate acyltransferase 832576 plsC 3563409 plsC Mycoplasma hyopneumoniae J 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_279426.1 831839 D 262719 CDS YP_279427.1 71893981 3563410 832606..833325 1 NC_007295.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB; segregation and condensation protein A 833325 scpA 3563410 scpA Mycoplasma hyopneumoniae J segregation and condensation protein A YP_279427.1 832606 D 262719 CDS YP_279428.1 71893982 3563411 833327..833902 1 NC_007295.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer; segregation and condensation protein B 833902 scpB 3563411 scpB Mycoplasma hyopneumoniae J segregation and condensation protein B YP_279428.1 833327 D 262719 CDS YP_279429.1 71893983 3563412 833924..836185 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0392; hypothetical protein 836185 3563412 MHJ_0635 Mycoplasma hyopneumoniae J hypothetical protein YP_279429.1 833924 D 262719 CDS YP_279430.1 71893984 3563413 complement(836729..837697) 1 NC_007295.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 837697 gcp 3563413 gcp Mycoplasma hyopneumoniae J DNA-binding/iron metalloprotein/AP endonuclease YP_279430.1 836729 R 262719 CDS YP_279431.1 71893985 3563414 complement(838234..838806) 1 NC_007295.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 838806 nusG 3563414 nusG Mycoplasma hyopneumoniae J transcription antitermination protein NusG YP_279431.1 838234 R 262719 CDS YP_279432.1 71893986 3563415 complement(838826..839164) 1 NC_007295.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 839164 secE 3563415 secE Mycoplasma hyopneumoniae J preprotein translocase subunit SecE YP_279432.1 838826 R 262719 CDS YP_279433.1 71893987 3563416 complement(839255..839809) 1 NC_007295.1 hypothetical protein 839809 3563416 MHJ_0639 Mycoplasma hyopneumoniae J hypothetical protein YP_279433.1 839255 R 262719 CDS YP_279434.1 71893988 3563417 complement(839821..840522) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0566; tRNA/rRNA methyltransferase 840522 3563417 MHJ_0640 Mycoplasma hyopneumoniae J tRNA/rRNA methyltransferase YP_279434.1 839821 R 262719 CDS YP_279435.1 71893989 3563418 complement(840556..841761) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0215; cysteinyl-tRNA synthetase 841761 cysS 3563418 cysS Mycoplasma hyopneumoniae J cysteinyl-tRNA synthetase YP_279435.1 840556 R 262719 CDS YP_279436.1 71893990 3563419 complement(841757..842419) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1451; hypothetical protein 842419 3563419 MHJ_0642 Mycoplasma hyopneumoniae J hypothetical protein YP_279436.1 841757 R 262719 CDS YP_279437.1 71893991 3563420 complement(842424..843656) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG1253; TC:9.B.37.2.1; hemolysin C 843656 3563420 MHJ_0643 Mycoplasma hyopneumoniae J hemolysin C YP_279437.1 842424 R 262719 CDS YP_279438.1 71893992 3563421 complement(843656..845047) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0305; replicative DNA helicase 845047 dnaB 3563421 dnaB Mycoplasma hyopneumoniae J replicative DNA helicase YP_279438.1 843656 R 262719 CDS YP_279439.1 71893993 3563422 complement(845040..845477) 1 NC_007295.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 845477 rplI 3563422 rplI Mycoplasma hyopneumoniae J 50S ribosomal protein L9 YP_279439.1 845040 R 262719 CDS YP_279440.1 71893994 3563423 complement(845458..847455) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG3887; hypothetical protein 847455 3563423 MHJ_0646 Mycoplasma hyopneumoniae J hypothetical protein YP_279440.1 845458 R 262719 CDS YP_279441.1 71893995 3563424 complement(847459..849831) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0495; leucyl-tRNA synthetase 849831 leuS 3563424 leuS Mycoplasma hyopneumoniae J leucyl-tRNA synthetase YP_279441.1 847459 R 262719 CDS YP_279442.1 71893996 3563425 850039..852018 1 NC_007295.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 852018 uvrB 3563425 uvrB Mycoplasma hyopneumoniae J excinuclease ABC subunit B YP_279442.1 850039 D 262719 CDS YP_279443.1 71893997 3563426 852040..852903 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0009; hypothetical protein 852903 3563426 MHJ_0649 Mycoplasma hyopneumoniae J hypothetical protein YP_279443.1 852040 D 262719 CDS YP_279444.1 71893998 3563427 complement(853091..853489) 1 NC_007295.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 853489 rpsI 3563427 rpsI Mycoplasma hyopneumoniae J 30S ribosomal protein S9 YP_279444.1 853091 R 262719 CDS YP_279445.1 71893999 3563428 complement(853493..853927) 1 NC_007295.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 853927 rplM 3563428 rplM Mycoplasma hyopneumoniae J 50S ribosomal protein L13 YP_279445.1 853493 R 262719 CDS YP_279446.1 71894000 3563429 complement(854060..854812) 1 NC_007295.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 854812 ksgA 3563429 ksgA Mycoplasma hyopneumoniae J dimethyladenosine transferase YP_279446.1 854060 R 262719 CDS YP_279447.1 71894001 3563430 complement(854820..856082) 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; COG0084; hypothetical protein 856082 3563430 MHJ_0653 Mycoplasma hyopneumoniae J hypothetical protein YP_279447.1 854820 R 262719 CDS YP_279448.1 71894002 3563916 856169..857155 1 NC_007295.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 857155 prsA 3563916 prsA Mycoplasma hyopneumoniae J ribose-phosphate pyrophosphokinase YP_279448.1 856169 D 262719 CDS YP_279449.1 71894003 3563861 857178..857786 1 NC_007295.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 857786 gidB 3563861 gidB Mycoplasma hyopneumoniae J 16S rRNA methyltransferase GidB YP_279449.1 857178 D 262719 CDS YP_279450.1 71894004 3563504 857925..859808 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; prolipoprotein p65 859808 3563504 MHJ_0656 Mycoplasma hyopneumoniae J prolipoprotein p65 YP_279450.1 857925 D 262719 CDS YP_279451.1 71894005 3563347 860006..862945 1 NC_007295.1 identified by sequence similarity; ORF located using GeneMark; Blastx; COG1196; TC:1.C.57.1.1; ABC transporter ATP-binding protein P115-like 862945 3563347 MHJ_0657 Mycoplasma hyopneumoniae J ABC transporter ATP-binding protein P115-like YP_279451.1 860006 D 262719 CDS YP_279452.1 71894006 3563348 863067..863219 1 NC_007295.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 863219 rpmG 3563348 rpmG Mycoplasma hyopneumoniae J 50S ribosomal protein L33 YP_279452.1 863067 D 262719 CDS YP_279453.1 71894007 3563349 863221..864258 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0006; XAA-Pro aminopeptidase 864258 pepP 3563349 pepP Mycoplasma hyopneumoniae J XAA-Pro aminopeptidase YP_279453.1 863221 D 262719 CDS YP_279454.1 71894008 3563350 864295..865998 1 NC_007295.1 hypothetical protein 865998 3563350 MHJ_0660 Mycoplasma hyopneumoniae J hypothetical protein YP_279454.1 864295 D 262719 CDS YP_279455.1 71894009 3563351 866056..867627 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; hypothetical protein 867627 3563351 MHJ_0661 Mycoplasma hyopneumoniae J hypothetical protein YP_279455.1 866056 D 262719 CDS YP_279456.1 71894010 3563352 complement(868307..871843) 1 NC_007295.1 hypothetical protein 871843 3563352 MHJ_0662 Mycoplasma hyopneumoniae J hypothetical protein YP_279456.1 868307 R 262719 CDS YP_279457.1 71894011 3563353 complement(871941..875852) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; adhesin like-protein P146 875852 3563353 MHJ_0663 Mycoplasma hyopneumoniae J adhesin like-protein P146 YP_279457.1 871941 R 262719 CDS YP_279458.1 71894012 3563354 876401..877255 1 NC_007295.1 identified by sequence similarity; ORF located using Glimmer; Blastx; ABC transporter ATP-binding protein Pr1 877255 3563354 MHJ_0664 Mycoplasma hyopneumoniae J ABC transporter ATP-binding protein Pr1 YP_279458.1 876401 D 262719 CDS YP_279460.1 71894014 3563356 883176..883790 1 NC_007295.1 hypothetical protein 883790 3563356 MHJ_0666 Mycoplasma hyopneumoniae J hypothetical protein YP_279460.1 883176 D 262719 CDS YP_279461.1 71894015 3563357 883831..884313 1 NC_007295.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 884313 greA 3563357 greA Mycoplasma hyopneumoniae J transcription elongation factor GreA YP_279461.1 883831 D 262719 CDS YP_279462.1 71894016 3563358 884382..885875 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0534; TC:2.A.66.1.4; hypothetical protein 885875 3563358 MHJ_0668 Mycoplasma hyopneumoniae J hypothetical protein YP_279462.1 884382 D 262719 CDS YP_279463.1 71894017 3563359 885956..886921 1 NC_007295.1 in some Mycoplasma, this protein is fused to aspartyl/glutamyl-tRNA amidotransferase subunit C domain; hypothetical protein 886921 3563359 MHJ_0669 Mycoplasma hyopneumoniae J hypothetical protein YP_279463.1 885956 D 262719 CDS YP_279464.1 71894018 3563360 886934..888847 1 NC_007295.1 hypothetical protein 888847 3563360 MHJ_0670 Mycoplasma hyopneumoniae J hypothetical protein YP_279464.1 886934 D 262719 CDS YP_279465.1 71894019 3563361 888858..891326 1 NC_007295.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 891326 valS 3563361 valS Mycoplasma hyopneumoniae J valyl-tRNA synthetase YP_279465.1 888858 D 262719 CDS YP_279466.1 71894020 3563362 complement(891333..892334) 1 NC_007295.1 hypothetical protein 892334 3563362 MHJ_0672 Mycoplasma hyopneumoniae J hypothetical protein YP_279466.1 891333 R 262719 CDS YP_279467.1 71894021 3563363 complement(892390..895008) 1 NC_007295.1 hypothetical protein 895008 3563363 MHJ_0673 Mycoplasma hyopneumoniae J hypothetical protein YP_279467.1 892390 R 262719 CDS YP_279468.1 71894022 3563364 complement(895087..896916) 1 NC_007295.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 896916 3563364 MHJ_0674 Mycoplasma hyopneumoniae J inner membrane protein translocase component YidC YP_279468.1 895087 R 262719 CDS YP_279469.1 71894023 3563365 complement(896906..897244) 1 NC_007295.1 identified by sequence similarity; ORF located using Blastx; COG0594; ribonuclease P protein component 897244 rnpA 3563365 rnpA Mycoplasma hyopneumoniae J ribonuclease P protein component YP_279469.1 896906 R 262719 CDS YP_279470.1 71894024 3563366 complement(897262..897405) 1 NC_007295.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 897405 rpmH 3563366 rpmH Mycoplasma hyopneumoniae J 50S ribosomal protein L34 YP_279470.1 897262 R 262719 CDS