-- dump date 20240506_001520 -- class Genbank::Contig -- table contig_comment -- id comment NZ_CP001668.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001668.1.REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. CraigREFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at theREFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed.REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome inREFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. InREFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as aREFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic toolsREFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modificationREFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoidesREFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a MycoplasmaREFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoidesREFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri.REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/26/2024 15:47:18REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/26/2024 15:47:18 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/26/2024 15:47:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/26/2024 15:47:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/26/2024 15:47:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/26/2024 15:47:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/26/2024 15:47:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/26/2024 15:47:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 900REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/26/2024 15:47:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 900 CDSs (total) :: 861REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/26/2024 15:47:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 900 CDSs (total) :: 861 Genes (coding) :: 854REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/26/2024 15:47:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 900 CDSs (total) :: 861 Genes (coding) :: 854 CDSs (with protein) :: 854REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/26/2024 15:47:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 900 CDSs (total) :: 861 Genes (coding) :: 854 CDSs (with protein) :: 854 Genes (RNA) :: 39REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/26/2024 15:47:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 900 CDSs (total) :: 861 Genes (coding) :: 854 CDSs (with protein) :: 854 Genes (RNA) :: 39 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/26/2024 15:47:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 900 CDSs (total) :: 861 Genes (coding) :: 854 CDSs (with protein) :: 854 Genes (RNA) :: 39 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/26/2024 15:47:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 900 CDSs (total) :: 861 Genes (coding) :: 854 CDSs (with protein) :: 854 Genes (RNA) :: 39 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 30REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/26/2024 15:47:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 900 CDSs (total) :: 861 Genes (coding) :: 854 CDSs (with protein) :: 854 Genes (RNA) :: 39 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 30 ncRNAs :: 3REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/26/2024 15:47:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 900 CDSs (total) :: 861 Genes (coding) :: 854 CDSs (with protein) :: 854 Genes (RNA) :: 39 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 30 ncRNAs :: 3 Pseudo Genes (total) :: 7REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/26/2024 15:47:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 900 CDSs (total) :: 861 Genes (coding) :: 854 CDSs (with protein) :: 854 Genes (RNA) :: 39 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 30 ncRNAs :: 3 Pseudo Genes (total) :: 7 CDSs (without protein) :: 7REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/26/2024 15:47:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 900 CDSs (total) :: 861 Genes (coding) :: 854 CDSs (with protein) :: 854 Genes (RNA) :: 39 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 30 ncRNAs :: 3 Pseudo Genes (total) :: 7 CDSs (without protein) :: 7 Pseudo Genes (ambiguous residues) :: 0 of 7REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/26/2024 15:47:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 900 CDSs (total) :: 861 Genes (coding) :: 854 CDSs (with protein) :: 854 Genes (RNA) :: 39 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 30 ncRNAs :: 3 Pseudo Genes (total) :: 7 CDSs (without protein) :: 7 Pseudo Genes (ambiguous residues) :: 0 of 7 Pseudo Genes (frameshifted) :: 4 of 7REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/26/2024 15:47:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 900 CDSs (total) :: 861 Genes (coding) :: 854 CDSs (with protein) :: 854 Genes (RNA) :: 39 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 30 ncRNAs :: 3 Pseudo Genes (total) :: 7 CDSs (without protein) :: 7 Pseudo Genes (ambiguous residues) :: 0 of 7 Pseudo Genes (frameshifted) :: 4 of 7 Pseudo Genes (incomplete) :: 4 of 7REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/26/2024 15:47:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 900 CDSs (total) :: 861 Genes (coding) :: 854 CDSs (with protein) :: 854 Genes (RNA) :: 39 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 30 ncRNAs :: 3 Pseudo Genes (total) :: 7 CDSs (without protein) :: 7 Pseudo Genes (ambiguous residues) :: 0 of 7 Pseudo Genes (frameshifted) :: 4 of 7 Pseudo Genes (incomplete) :: 4 of 7 Pseudo Genes (internal stop) :: 1 of 7REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/26/2024 15:47:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 900 CDSs (total) :: 861 Genes (coding) :: 854 CDSs (with protein) :: 854 Genes (RNA) :: 39 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 30 ncRNAs :: 3 Pseudo Genes (total) :: 7 CDSs (without protein) :: 7 Pseudo Genes (ambiguous residues) :: 0 of 7 Pseudo Genes (frameshifted) :: 4 of 7 Pseudo Genes (incomplete) :: 4 of 7 Pseudo Genes (internal stop) :: 1 of 7 Pseudo Genes (multiple problems) :: 1 of 7REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/26/2024 15:47:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 900 CDSs (total) :: 861 Genes (coding) :: 854 CDSs (with protein) :: 854 Genes (RNA) :: 39 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 30 ncRNAs :: 3 Pseudo Genes (total) :: 7 CDSs (without protein) :: 7 Pseudo Genes (ambiguous residues) :: 0 of 7 Pseudo Genes (frameshifted) :: 4 of 7 Pseudo Genes (incomplete) :: 4 of 7 Pseudo Genes (internal stop) :: 1 of 7 Pseudo Genes (multiple problems) :: 1 of 7 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001668.1. GM12 strain was originally isolated by Al DaMassa. The J. Craig Venter Institute obtained the strain from Dr. Mary Brown at the University of Florida. In 2009 the organism was renamed. The J. Craig Venter Institute (JCVI) used it as a donor genome in the first demonstration of bacterial genome transplantation. In 2009 the JCVI cloned the genome into Saccharomyces cerevisiae as a yeast centromeric plasmid. The JCVI then used yeast genetic tools to delete part of a type III restriction enzyme, a modification that could not be made using existing genetic tools for M. mycoides and the genome was transplanted from yeast into a Mycoplasma capricolum recipient cell to generate a novel mutant M. mycoides subspecies capri. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/26/2024 15:47:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 900 CDSs (total) :: 861 Genes (coding) :: 854 CDSs (with protein) :: 854 Genes (RNA) :: 39 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 30 ncRNAs :: 3 Pseudo Genes (total) :: 7 CDSs (without protein) :: 7 Pseudo Genes (ambiguous residues) :: 0 of 7 Pseudo Genes (frameshifted) :: 4 of 7 Pseudo Genes (incomplete) :: 4 of 7 Pseudo Genes (internal stop) :: 1 of 7 Pseudo Genes (multiple problems) :: 1 of 7 ##Genome-Annotation-Data-END## COMPLETENESS: full length.