-- dump date 20140619_161531 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 272633000001 SEQ_END SEQ_END NC_004432.1 1358633 1358633 DR NC_004432.1; contig end 1358633..1358633 Mycoplasma penetrans HF-2 NP_757387.1 CDS dnaA NC_004432.1 1 1359 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 1..1359 Mycoplasma penetrans HF-2 1040514 NP_757388.1 CDS MYPE20 NC_004432.1 1450 2586 D DNA polymerase III subunit beta 1450..2586 Mycoplasma penetrans HF-2 1040629 NP_757389.1 CDS gyrB NC_004432.1 3002 4951 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 3002..4951 Mycoplasma penetrans HF-2 1040630 NP_757390.1 CDS MYPE40 NC_004432.1 4970 7483 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 4970..7483 Mycoplasma penetrans HF-2 1040631 NP_757391.1 CDS MYPE50 NC_004432.1 8390 8995 D truncated, C-terminal of MYPE9620; transposase 8390..8995 Mycoplasma penetrans HF-2 1040632 NP_757392.1 CDS MYPE60 NC_004432.1 9286 9654 D truncated, N-terminal of MYPE9620; transposase 9286..9654 Mycoplasma penetrans HF-2 1040634 NP_757393.1 CDS MYPE70 NC_004432.1 9776 9961 D truncated; transposase 9776..9961 Mycoplasma penetrans HF-2 1040635 NP_757394.1 CDS MYPE80 NC_004432.1 12011 12838 D Soj protein 12011..12838 Mycoplasma penetrans HF-2 1040636 NP_757395.1 CDS MYPE90 NC_004432.1 12851 13678 D hypothetical protein 12851..13678 Mycoplasma penetrans HF-2 1040637 NP_757396.1 CDS MYPE100 NC_004432.1 13682 14167 D rRNA methylase 13682..14167 Mycoplasma penetrans HF-2 1040638 NP_757397.1 CDS MYPE110 NC_004432.1 14264 14506 R MYPE120 paralog; hypothetical protein complement(14264..14506) Mycoplasma penetrans HF-2 1040639 NP_757398.1 CDS MYPE120 NC_004432.1 14624 15082 R paralog family; hypothetical protein complement(14624..15082) Mycoplasma penetrans HF-2 1040640 NP_757399.1 CDS MYPE130 NC_004432.1 15438 16343 R pseudouridine synthase complement(15438..16343) Mycoplasma penetrans HF-2 1040641 NP_757400.1 CDS MYPE140 NC_004432.1 16424 16906 D peroxiredoxin 16424..16906 Mycoplasma penetrans HF-2 1040642 NP_757401.1 CDS MYPE150 NC_004432.1 17109 18683 D hypothetical protein 17109..18683 Mycoplasma penetrans HF-2 1040643 NP_757402.1 CDS MYPE160 NC_004432.1 18805 19704 D UTP-glucose-1-phosphate uridylyltransferase 18805..19704 Mycoplasma penetrans HF-2 1040644 NP_757403.1 CDS MYPE170 NC_004432.1 19895 21451 R transposase complement(19895..21451) Mycoplasma penetrans HF-2 1040645 NP_757404.1 CDS MYPE180 NC_004432.1 21634 24378 D hypothetical protein 21634..24378 Mycoplasma penetrans HF-2 1040646 NP_757405.1 CDS MYPE190 NC_004432.1 24393 28433 D hypothetical protein 24393..28433 Mycoplasma penetrans HF-2 1040647 NP_757406.1 CDS MYPE200 NC_004432.1 28477 31512 D phosphoglycerate mutase 28477..31512 Mycoplasma penetrans HF-2 1040648 NP_757407.1 CDS MYPE210 NC_004432.1 31521 32438 D triose phosphate isomerase 31521..32438 Mycoplasma penetrans HF-2 1040649 NP_757408.1 CDS cysS NC_004432.1 32759 34078 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 32759..34078 Mycoplasma penetrans HF-2 1040650 NP_757409.1 CDS MYPE230 NC_004432.1 34086 34802 D rRNA methylase 34086..34802 Mycoplasma penetrans HF-2 1040651 NP_757410.1 CDS MYPE240 NC_004432.1 34793 35407 D hypothetical protein 34793..35407 Mycoplasma penetrans HF-2 1040652 NP_757411.1 CDS rplK NC_004432.1 35628 36095 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 35628..36095 Mycoplasma penetrans HF-2 1040653 NP_757412.1 CDS MYPE260 NC_004432.1 36106 37116 D Binds directly to 23S rRNA and is located proximal to the site where elongation factor Tu is bound to the ribosome; 50S ribosomal protein L1 36106..37116 Mycoplasma penetrans HF-2 1040654 NP_757413.1 CDS MYPE270 NC_004432.1 37157 38092 R glycosyltransferase complement(37157..38092) Mycoplasma penetrans HF-2 1040655 NP_757414.1 CDS MYPE280 NC_004432.1 38104 38559 R hypothetical protein complement(38104..38559) Mycoplasma penetrans HF-2 1040656 NP_757415.1 CDS rpsL NC_004432.1 39162 39584 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 39162..39584 Mycoplasma penetrans HF-2 1040657 NP_757416.1 CDS MYPE300 NC_004432.1 39599 40066 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 39599..40066 Mycoplasma penetrans HF-2 1040658 NP_757417.1 CDS MYPE310 NC_004432.1 40085 42133 D elongation factor G 40085..42133 Mycoplasma penetrans HF-2 1040659 NP_757418.1 CDS tuf NC_004432.1 42293 43477 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 42293..43477 Mycoplasma penetrans HF-2 1040660 NP_757419.1 CDS MYPE330 NC_004432.1 43741 44757 D hypothetical protein 43741..44757 Mycoplasma penetrans HF-2 1040661 NP_757420.1 CDS MYPE340 NC_004432.1 44860 45213 D hypothetical protein 44860..45213 Mycoplasma penetrans HF-2 1040662 NP_757421.1 CDS MYPE350 NC_004432.1 45182 45544 D holo-acyl carrier protein synthase 45182..45544 Mycoplasma penetrans HF-2 1040663 NP_757422.1 CDS MYPE360 NC_004432.1 45685 45951 D hypothetical protein 45685..45951 Mycoplasma penetrans HF-2 1040664 NP_757423.1 CDS MYPE370 NC_004432.1 46091 46903 D 1-acyl-sn-glycerol-3-phosphate acyltransferase 46091..46903 Mycoplasma penetrans HF-2 1040665 NP_757424.1 CDS MYPE380 NC_004432.1 46920 47795 D hypothetical protein 46920..47795 Mycoplasma penetrans HF-2 1040666 NP_757425.1 CDS scpB NC_004432.1 47785 48378 D functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer; segregation and condensation protein B 47785..48378 Mycoplasma penetrans HF-2 1040667 NP_757426.1 CDS MYPE400 NC_004432.1 48388 48615 D hypothetical protein 48388..48615 Mycoplasma penetrans HF-2 1040668 NP_757427.1 CDS engB NC_004432.1 48615 49175 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 48615..49175 Mycoplasma penetrans HF-2 1040669 NP_757428.1 CDS MYPE420 NC_004432.1 49185 51803 D valyl-tRNA synthetase 49185..51803 Mycoplasma penetrans HF-2 1040670 NP_757429.1 CDS MYPE430 NC_004432.1 52584 53678 D competence protein 52584..53678 Mycoplasma penetrans HF-2 1040671 NP_757430.1 CDS MYPE440 NC_004432.1 53570 55570 D hypothetical protein 53570..55570 Mycoplasma penetrans HF-2 1040672 NP_757431.1 CDS MYPE450 NC_004432.1 55583 56521 D hypothetical protein 55583..56521 Mycoplasma penetrans HF-2 1040673 NP_757432.1 CDS MYPE460 NC_004432.1 56499 57842 D integral membrane protein 56499..57842 Mycoplasma penetrans HF-2 1040674 NP_757433.1 CDS MYPE470 NC_004432.1 57935 58846 D similar to cytadherence-accessory protein HMW1 homolog of Mycoplasma genitalium of MG313, F64234 Expect=2.5e-18, Identities=30%; integral membrane protein 57935..58846 Mycoplasma penetrans HF-2 1040675 NP_757434.1 CDS MYPE480 NC_004432.1 58901 59137 R ribosomal protein S20 complement(58901..59137) Mycoplasma penetrans HF-2 1040676 NP_757435.1 CDS MYPE490 NC_004432.1 59212 60006 D hypothetical protein 59212..60006 Mycoplasma penetrans HF-2 1040677 NP_757436.1 CDS MYPE500 NC_004432.1 59967 60923 D methionyl-tRNA formyltransferase 59967..60923 Mycoplasma penetrans HF-2 1040678 NP_757437.1 CDS MYPE510 NC_004432.1 60933 62735 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 60933..62735 Mycoplasma penetrans HF-2 1040679 NP_757438.1 CDS pyrG NC_004432.1 62857 64464 D CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 62857..64464 Mycoplasma penetrans HF-2 1040680 NP_757439.1 CDS MYPE530 NC_004432.1 64475 65299 D GTPase 64475..65299 Mycoplasma penetrans HF-2 1040681 NP_757440.1 CDS MYPE540 NC_004432.1 65383 65916 D hypothetical protein 65383..65916 Mycoplasma penetrans HF-2 1040682 NP_757441.1 CDS MYPE550 NC_004432.1 66016 66447 D hypothetical protein 66016..66447 Mycoplasma penetrans HF-2 1040683 NP_757442.1 CDS MYPE560 NC_004432.1 66469 67377 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 66469..67377 Mycoplasma penetrans HF-2 1040684 NP_757443.1 CDS MYPE570 NC_004432.1 67456 67692 D ATP synthase subunit C 67456..67692 Mycoplasma penetrans HF-2 1040685 NP_757444.1 CDS MYPE580 NC_004432.1 67714 68301 D ATP synthase subunit B 67714..68301 Mycoplasma penetrans HF-2 1040686 NP_757445.1 CDS MYPE590 NC_004432.1 68318 68884 D ATP synthase subunit delta 68318..68884 Mycoplasma penetrans HF-2 1040687 NP_757446.1 CDS MYPE600 NC_004432.1 68887 70428 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 68887..70428 Mycoplasma penetrans HF-2 1040688 NP_757447.1 CDS MYPE610 NC_004432.1 70439 71299 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma 70439..71299 Mycoplasma penetrans HF-2 1040689 NP_757448.2 CDS MYPE620 NC_004432.1 72168 73637 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 72168..73637 Mycoplasma penetrans HF-2 1040690 NP_757449.1 CDS MYPE630 NC_004432.1 73649 74056 D ATP synthase subunit epsilon 73649..74056 Mycoplasma penetrans HF-2 1040691 NP_757450.2 CDS rpmE NC_004432.1 74156 74443 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 74156..74443 Mycoplasma penetrans HF-2 1040692 NP_757451.1 CDS prfA NC_004432.1 74531 75610 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 74531..75610 Mycoplasma penetrans HF-2 1040693 NP_757452.1 CDS MYPE660 NC_004432.1 75576 76448 D S-adenosylmethionine-dependent methyltransferase 75576..76448 Mycoplasma penetrans HF-2 1040694 NP_757453.1 CDS MYPE670 NC_004432.1 76451 77092 D Sua5/YciO/YrdC family protein; translation factor 76451..77092 Mycoplasma penetrans HF-2 1040695 NP_757454.1 CDS MYPE680 NC_004432.1 77058 77534 D ribose 5-phosphate and galactose-6-phosphate isomerase 77058..77534 Mycoplasma penetrans HF-2 1040696 NP_757455.1 CDS MYPE690 NC_004432.1 77536 78258 D two-component response regulator 77536..78258 Mycoplasma penetrans HF-2 1040697 NP_757456.1 CDS MYPE700 NC_004432.1 78521 79102 D predicted ThiJ family; intracellular protease 78521..79102 Mycoplasma penetrans HF-2 1040698 NP_757457.1 CDS hrcA NC_004432.1 79238 80254 D Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 79238..80254 Mycoplasma penetrans HF-2 1040699 NP_757458.1 CDS MYPE720 NC_004432.1 80229 80774 D hypothetical protein 80229..80774 Mycoplasma penetrans HF-2 1040700 NP_757459.1 CDS MYPE730 NC_004432.1 80780 82618 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 80780..82618 Mycoplasma penetrans HF-2 1040701 NP_757460.1 CDS MYPE740 NC_004432.1 82797 83687 D hypothetical protein 82797..83687 Mycoplasma penetrans HF-2 1040702 NP_757461.1 CDS MYPE750 NC_004432.1 83702 84031 R hypothetical protein complement(83702..84031) Mycoplasma penetrans HF-2 1040703 NP_757462.1 CDS MYPE760 NC_004432.1 84059 84310 D nitrogen fixation protein 84059..84310 Mycoplasma penetrans HF-2 1040704 NP_757463.1 CDS MYPE770 NC_004432.1 84320 86344 D transketolase 84320..86344 Mycoplasma penetrans HF-2 1040705 NP_757464.1 CDS MYPE780 NC_004432.1 86502 87998 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 86502..87998 Mycoplasma penetrans HF-2 1040706 NP_757465.1 CDS rpoB NC_004432.1 88217 92344 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 88217..92344 Mycoplasma penetrans HF-2 1040707 NP_757466.1 CDS MYPE800 NC_004432.1 92365 96231 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 92365..96231 Mycoplasma penetrans HF-2 1040708 NP_757467.1 CDS rplM NC_004432.1 96331 96771 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 96331..96771 Mycoplasma penetrans HF-2 1040709 NP_757468.1 CDS rpsI NC_004432.1 96789 97181 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 96789..97181 Mycoplasma penetrans HF-2 1040710 NP_757469.1 CDS MYPE830 NC_004432.1 97919 98137 D hypothetical protein 97919..98137 Mycoplasma penetrans HF-2 1040711 NP_757470.1 CDS MYPE835 NC_004432.1 98295 98510 D hypothetical protein 98295..98510 Mycoplasma penetrans HF-2 1040713 NP_757471.1 CDS MYPE840 NC_004432.1 98853 99674 D haloacid dehalogenase 98853..99674 Mycoplasma penetrans HF-2 1040714 NP_757472.1 CDS MYPE850 NC_004432.1 100051 102228 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(100051..102228) Mycoplasma penetrans HF-2 1040716 NP_757473.1 CDS nrdI NC_004432.1 102261 102710 R in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein complement(102261..102710) Mycoplasma penetrans HF-2 1040718 NP_757474.1 CDS nrdF NC_004432.1 102713 103732 R B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta complement(102713..103732) Mycoplasma penetrans HF-2 1040719 NP_757475.1 CDS MYPE880 NC_004432.1 104027 109387 D MYPE890 paralog; permease 104027..109387 Mycoplasma penetrans HF-2 1040720 NP_757476.1 CDS MYPE890 NC_004432.1 109575 114956 D paralog family; permease 109575..114956 Mycoplasma penetrans HF-2 1040721 NP_757477.1 CDS MYPE900 NC_004432.1 115033 116757 R hypothetical protein complement(115033..116757) Mycoplasma penetrans HF-2 1040722 NP_757478.1 CDS MYPE910 NC_004432.1 116865 117722 R membrane integrated oxidoreductase complement(116865..117722) Mycoplasma penetrans HF-2 1040723 NP_757479.1 CDS MYPE920 NC_004432.1 117724 118446 R hypothetical protein complement(117724..118446) Mycoplasma penetrans HF-2 1040724 NP_757480.1 CDS MYPE930 NC_004432.1 118459 118875 R hypothetical protein complement(118459..118875) Mycoplasma penetrans HF-2 1040725 NP_757481.1 CDS MYPE940 NC_004432.1 119066 120202 D methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 119066..120202 Mycoplasma penetrans HF-2 1040726 NP_757482.1 CDS MYPE950 NC_004432.1 120286 120885 R paralog family; hypothetical protein complement(120286..120885) Mycoplasma penetrans HF-2 1040727 NP_757483.1 CDS MYPE960 NC_004432.1 121160 122272 R paralog family; ABC transporter ATP-binding protein complement(121160..122272) Mycoplasma penetrans HF-2 1040728 NP_757484.1 CDS MYPE970 NC_004432.1 122274 124313 R hypothetical protein complement(122274..124313) Mycoplasma penetrans HF-2 1040729 NP_757485.1 CDS MYPE980 NC_004432.1 124534 124806 D molecular chaperone GroES 124534..124806 Mycoplasma penetrans HF-2 1040730 NP_757486.1 CDS groEL NC_004432.1 124836 126473 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 124836..126473 Mycoplasma penetrans HF-2 1040731 NP_757487.1 CDS MYPE1000 NC_004432.1 126533 127024 R deoxyuridine 5'triphosphate nucleotidohydrolase dUTPase complement(126533..127024) Mycoplasma penetrans HF-2 1040732 NP_757488.1 CDS MYPE1010 NC_004432.1 127201 127599 D ribosomal protein S16 127201..127599 Mycoplasma penetrans HF-2 1040733 NP_757489.1 CDS trmD NC_004432.1 127608 128288 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 127608..128288 Mycoplasma penetrans HF-2 1040734 NP_757490.1 CDS rplS NC_004432.1 128301 128738 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 128301..128738 Mycoplasma penetrans HF-2 1040735 NP_757491.1 CDS MYPE1035 NC_004432.1 128879 129049 R hypothetical protein complement(128879..129049) Mycoplasma penetrans HF-2 1040736 NP_757492.1 CDS MYPE1040 NC_004432.1 129290 130030 D purine nucleoside phosphorylase 129290..130030 Mycoplasma penetrans HF-2 1040737 NP_757493.1 CDS MYPE1050 NC_004432.1 130032 131333 D thymidine phosphorylase 130032..131333 Mycoplasma penetrans HF-2 1040738 NP_757494.1 CDS MYPE1060 NC_004432.1 131342 131764 D cytidine deaminase 131342..131764 Mycoplasma penetrans HF-2 1040739 NP_757495.1 CDS MYPE1070 NC_004432.1 131768 133435 D phosphomannomutase 131768..133435 Mycoplasma penetrans HF-2 1040740 NP_757496.1 CDS MYPE1080 NC_004432.1 133662 136535 D hypothetical protein 133662..136535 Mycoplasma penetrans HF-2 1040741 NP_757497.1 CDS nusA NC_004432.1 136647 138440 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 136647..138440 Mycoplasma penetrans HF-2 1040742 NP_757498.1 CDS MYPE1100 NC_004432.1 138433 138705 D hypothetical protein 138433..138705 Mycoplasma penetrans HF-2 1040743 NP_757499.1 CDS infB NC_004432.1 138728 140590 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 138728..140590 Mycoplasma penetrans HF-2 1040744 NP_757500.1 CDS rbfA NC_004432.1 140574 140924 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 140574..140924 Mycoplasma penetrans HF-2 1040745 NP_757501.1 CDS MYPE1130 NC_004432.1 140930 141619 D hypothetical protein 140930..141619 Mycoplasma penetrans HF-2 1040746 NP_757502.1 CDS rpsF NC_004432.1 141878 142315 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 141878..142315 Mycoplasma penetrans HF-2 1040747 NP_757503.1 CDS MYPE1150 NC_004432.1 142348 142917 D single-strand DNA binding protein 142348..142917 Mycoplasma penetrans HF-2 1040748 NP_757504.1 CDS MYPE1160 NC_004432.1 142944 143408 D ribosomal protein S18 142944..143408 Mycoplasma penetrans HF-2 1040749 NP_757505.1 CDS MYPE1170 NC_004432.1 143508 144176 D deoxyribose-phosphate aldolase 143508..144176 Mycoplasma penetrans HF-2 1040750 NP_757506.1 CDS MYPE1180 NC_004432.1 144185 144736 D similar to hydrolase; hypothetical protein 144185..144736 Mycoplasma penetrans HF-2 1040751 NP_757507.1 CDS MYPE1190 NC_004432.1 145140 146075 D endonuclease IV 145140..146075 Mycoplasma penetrans HF-2 1040752 NP_757508.1 CDS MYPE1200 NC_004432.1 146063 146497 D ferric uptake regulation protein 146063..146497 Mycoplasma penetrans HF-2 1040753 NP_757509.1 CDS MYPE1210 NC_004432.1 146703 148094 D integral membrane protein; transporter 146703..148094 Mycoplasma penetrans HF-2 1040755 NP_757510.1 CDS guaA NC_004432.1 148181 149716 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 148181..149716 Mycoplasma penetrans HF-2 1040756 NP_757511.1 CDS MYPE1230 NC_004432.1 149987 151048 D adenine-specific DNA methyltransferase 149987..151048 Mycoplasma penetrans HF-2 1040757 NP_757512.1 CDS MYPE1240 NC_004432.1 151186 152202 R IS1630-like transposase complement(151186..152202) Mycoplasma penetrans HF-2 1040758 NP_757513.1 CDS MYPE1250 NC_004432.1 152337 152765 R hypothetical protein complement(152337..152765) Mycoplasma penetrans HF-2 1040759 NP_757514.1 CDS uvrC NC_004432.1 152798 154567 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 152798..154567 Mycoplasma penetrans HF-2 1040760 NP_757515.1 CDS MYPE1270 NC_004432.1 154628 155164 R exonuclease complement(154628..155164) Mycoplasma penetrans HF-2 1040762 NP_757516.1 CDS MYPE1280 NC_004432.1 155344 155856 D phosphoesterase 155344..155856 Mycoplasma penetrans HF-2 1040763 NP_757517.1 CDS MYPE1290 NC_004432.1 155840 156277 R ribosomal protein-alanine-acetyltransferase complement(155840..156277) Mycoplasma penetrans HF-2 1040764 NP_757518.1 CDS MYPE1300 NC_004432.1 156252 156833 R hypothetical protein complement(156252..156833) Mycoplasma penetrans HF-2 1040765 NP_757519.1 CDS MYPE1310 NC_004432.1 156823 157719 R pseudouridine synthase complement(156823..157719) Mycoplasma penetrans HF-2 1040766 NP_757520.1 CDS MYPE1320 NC_004432.1 157729 158451 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(157729..158451) Mycoplasma penetrans HF-2 1040767 NP_757521.1 CDS MYPE1330 NC_004432.1 158444 159343 R lytB protein complement(158444..159343) Mycoplasma penetrans HF-2 1040768 NP_757522.1 CDS MYPE1340 NC_004432.1 159648 162320 D PTS system glucose-specific enzyme IIABC component 159648..162320 Mycoplasma penetrans HF-2 1040769 NP_757523.1 CDS MYPE1350 NC_004432.1 162389 163444 R hypothetical protein complement(162389..163444) Mycoplasma penetrans HF-2 1040770 NP_757524.1 CDS MYPE1370 NC_004432.1 164410 165459 D hypothetical protein 164410..165459 Mycoplasma penetrans HF-2 1040777 NP_757525.1 CDS MYPE1380 NC_004432.1 165706 167217 D hypothetical protein 165706..167217 Mycoplasma penetrans HF-2 1040778 NP_757526.1 CDS MYPE1390 NC_004432.1 167290 168258 R thioredoxin reductase complement(167290..168258) Mycoplasma penetrans HF-2 1040779 NP_757527.1 CDS MYPE1400 NC_004432.1 168317 169165 D methyltransferase 168317..169165 Mycoplasma penetrans HF-2 1040780 NP_757528.1 CDS MYPE1410 NC_004432.1 169188 169904 D hypothetical protein 169188..169904 Mycoplasma penetrans HF-2 1040781 NP_757529.1 CDS MYPE1420 NC_004432.1 169907 171136 D recombination factor protein RarA 169907..171136 Mycoplasma penetrans HF-2 1040782 NP_757530.1 CDS MYPE1430 NC_004432.1 171184 172335 R hypothetical protein complement(171184..172335) Mycoplasma penetrans HF-2 1040783 NP_757531.1 CDS MYPE1440 NC_004432.1 172475 172954 D hypothetical protein 172475..172954 Mycoplasma penetrans HF-2 1040784 NP_757532.1 CDS MYPE1450 NC_004432.1 172947 173510 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 172947..173510 Mycoplasma penetrans HF-2 1040785 NP_757533.1 CDS MYPE1460 NC_004432.1 173513 174400 D ATPase of the PP-loop superfamily; cell cycle protein MesJ 173513..174400 Mycoplasma penetrans HF-2 1040786 NP_757534.1 CDS MYPE1470 NC_004432.1 174394 175527 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 174394..175527 Mycoplasma penetrans HF-2 1040787 NP_757535.1 CDS MYPE1480 NC_004432.1 175640 176620 D catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 175640..176620 Mycoplasma penetrans HF-2 1040788 NP_757536.1 CDS MYPE1490 NC_004432.1 176640 177800 R DNA-damage repair protein MucB complement(176640..177800) Mycoplasma penetrans HF-2 1040789 NP_757537.1 CDS MYPE1500 NC_004432.1 177790 178530 R hemolysin complement(177790..178530) Mycoplasma penetrans HF-2 1040790 NP_757538.1 CDS MYPE1510 NC_004432.1 178626 179390 R hypothetical protein complement(178626..179390) Mycoplasma penetrans HF-2 1040791 NP_757539.1 CDS MYPE1520 NC_004432.1 179569 182907 D coiled-coil structure containing protein 179569..182907 Mycoplasma penetrans HF-2 1040792 NP_757540.1 CDS MYPE1530 NC_004432.1 182921 186076 D coiled-coil structure containing protein; cytoskeletal protein 182921..186076 Mycoplasma penetrans HF-2 1040793 NP_757541.1 CDS MYPE1540 NC_004432.1 186078 188564 D coiled-coil structure containing protein 186078..188564 Mycoplasma penetrans HF-2 1040794 NP_757542.1 CDS MYPE1550 NC_004432.1 188576 198529 D ortholog of cytoskeletal protein HMW2 of M. pneumoniae MPN310, NP_109998, (SwissProt HMW2_MYCPN), predicted coiled-coil structure containing protein; cytoskeletal protein 188576..198529 Mycoplasma penetrans HF-2 1040795 NP_757543.1 CDS MYPE1560 NC_004432.1 198554 201118 D predicted coiled-coil structure containing protein; cytoskeletal protein 198554..201118 Mycoplasma penetrans HF-2 1040796 NP_757544.1 CDS MYPE1570 NC_004432.1 201148 203553 D similar to cytoskeletal protein HMW2 homolog MG218 of M. genitalium U39701, Expect = 1.1e-20, Identities = 152/631 (24%), predicted coiled-coil structure containing protein; cytoskeletal protein 201148..203553 Mycoplasma penetrans HF-2 1040797 NP_757545.1 CDS MYPE1580 NC_004432.1 203735 204301 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 203735..204301 Mycoplasma penetrans HF-2 1040798 NP_757546.1 CDS MYPE1590 NC_004432.1 204301 204585 D hypothetical protein 204301..204585 Mycoplasma penetrans HF-2 1040799 NP_757547.1 CDS MYPE1600 NC_004432.1 204575 205024 D transcription termination factor N-utilization substance protein B 204575..205024 Mycoplasma penetrans HF-2 1040800 NP_757548.1 CDS MYPE1610 NC_004432.1 205031 205735 D hypothetical protein 205031..205735 Mycoplasma penetrans HF-2 1040801 NP_757549.1 CDS MYPE1620 NC_004432.1 205725 206276 D hypothetical protein 205725..206276 Mycoplasma penetrans HF-2 1040802 NP_757550.1 CDS MYPE1630 NC_004432.1 206239 207567 D hypothetical protein 206239..207567 Mycoplasma penetrans HF-2 1040803 NP_757551.1 CDS MYPE1640 NC_004432.1 207733 208101 D hypothetical protein 207733..208101 Mycoplasma penetrans HF-2 1040804 NP_757552.1 CDS MYPE1650 NC_004432.1 208269 208787 R hypothetical protein complement(208269..208787) Mycoplasma penetrans HF-2 1040805 NP_757553.1 CDS MYPE1660 NC_004432.1 208836 210209 D hypothetical protein 208836..210209 Mycoplasma penetrans HF-2 1040806 NP_757554.1 CDS MYPE1670 NC_004432.1 210312 212162 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 210312..212162 Mycoplasma penetrans HF-2 1040807 NP_757555.1 CDS MYPE1680 NC_004432.1 212334 212834 D hypothetical protein 212334..212834 Mycoplasma penetrans HF-2 1040808 NP_757556.1 CDS MYPE1690 NC_004432.1 213101 214465 D NADH oxidase 213101..214465 Mycoplasma penetrans HF-2 1040809 NP_757557.1 CDS MYPE1700 NC_004432.1 214628 215215 D acetyl transferase 214628..215215 Mycoplasma penetrans HF-2 1040810 NP_757558.1 CDS MYPE1710 NC_004432.1 215371 215691 D thioredoxin 215371..215691 Mycoplasma penetrans HF-2 1040811 NP_757559.1 CDS MYPE1720 NC_004432.1 215896 216741 D RpiR family; transcriptional regulator 215896..216741 Mycoplasma penetrans HF-2 1040812 NP_757560.1 CDS MYPE1730 NC_004432.1 216965 219310 D PTS system glucose-specific IIABC component 216965..219310 Mycoplasma penetrans HF-2 1040813 NP_757561.1 CDS MYPE1740 NC_004432.1 219403 220095 D Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 219403..220095 Mycoplasma penetrans HF-2 1040814 NP_757562.1 CDS MYPE1750 NC_004432.1 220295 221479 D N-acetylglucosamine 6-P deacetylase 220295..221479 Mycoplasma penetrans HF-2 1040815 NP_757563.1 CDS MYPE1760 NC_004432.1 221487 222215 D N-acetylglucosamine 6-phosphate isomerase 221487..222215 Mycoplasma penetrans HF-2 1040816 NP_757564.1 CDS MYPE1770 NC_004432.1 222279 223340 R hypothetical protein complement(222279..223340) Mycoplasma penetrans HF-2 1040817 NP_757565.1 CDS MYPE1780 NC_004432.1 223836 224876 D adenine-specific DNA methyltransferase 223836..224876 Mycoplasma penetrans HF-2 1040818 NP_757566.1 CDS MYPE1790 NC_004432.1 224839 225765 D adenine-specific DNA methyltransferase 224839..225765 Mycoplasma penetrans HF-2 1040819 NP_757567.1 CDS MYPE1800 NC_004432.1 225777 227315 D hypothetical protein 225777..227315 Mycoplasma penetrans HF-2 1040820 NP_757568.1 CDS MYPE1810 NC_004432.1 227540 228442 R hypothetical protein complement(227540..228442) Mycoplasma penetrans HF-2 1040821 NP_757569.1 CDS MYPE1820 NC_004432.1 228709 229584 D ABC transporter membrane protein 228709..229584 Mycoplasma penetrans HF-2 1040822 NP_757570.1 CDS MYPE1830 NC_004432.1 229692 231485 D hypothetical protein 229692..231485 Mycoplasma penetrans HF-2 1040823 NP_757571.1 CDS MYPE1840 NC_004432.1 231463 233568 D NAD-dependent DNA ligase 231463..233568 Mycoplasma penetrans HF-2 1040824 NP_757572.1 CDS MYPE1850 NC_004432.1 233602 234132 D 6-O-methylguanine-DNA methyltransferase 233602..234132 Mycoplasma penetrans HF-2 1040825 NP_757573.1 CDS MYPE1860 NC_004432.1 234225 234968 D hypothetical protein 234225..234968 Mycoplasma penetrans HF-2 1040826 NP_757574.1 CDS MYPE1870 NC_004432.1 235617 236549 D hypothetical protein 235617..236549 Mycoplasma penetrans HF-2 1040827 NP_757575.1 CDS MYPE1880 NC_004432.1 236559 237263 D MYPE3080 paralog; ABC transporter ATP-binding protein 236559..237263 Mycoplasma penetrans HF-2 1040828 NP_757576.1 CDS acpD NC_004432.1 237453 238091 D catalyzes the hydrolytic cleavage of the 4'-phosphopantetheine residue from ACP; azoreductase 237453..238091 Mycoplasma penetrans HF-2 1040829 NP_757577.1 CDS MYPE1900 NC_004432.1 238182 238952 D hypothetical protein 238182..238952 Mycoplasma penetrans HF-2 1040830 NP_757578.1 CDS MYPE1910 NC_004432.1 238996 239478 R hypothetical protein complement(238996..239478) Mycoplasma penetrans HF-2 1040831 NP_757579.1 CDS MYPE1920 NC_004432.1 239545 240162 D hypothetical protein 239545..240162 Mycoplasma penetrans HF-2 1040833 NP_757580.1 CDS obgE NC_004432.1 240192 241481 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 240192..241481 Mycoplasma penetrans HF-2 1040834 NP_757581.1 CDS MYPE1940 NC_004432.1 241494 242225 D NH(3)-dependent NAD+ synthetase 241494..242225 Mycoplasma penetrans HF-2 1040835 NP_757582.1 CDS MYPE1950 NC_004432.1 242354 245491 D low similarity to P1-like adhesin precursor of Mycoplasma pirum L19685 Expect=6.3e-03, Identities=19%; integral membrane protein 242354..245491 Mycoplasma penetrans HF-2 1040836 NP_757583.1 CDS MYPE1960 NC_004432.1 245654 248800 D hypothetical protein 245654..248800 Mycoplasma penetrans HF-2 1040837 NP_757584.1 CDS MYPE1970 NC_004432.1 248978 249250 D hypothetical protein 248978..249250 Mycoplasma penetrans HF-2 1040838 NP_757585.1 CDS dnaE NC_004432.1 249228 252200 D catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand; in the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.; DNA polymerase III DnaE 249228..252200 Mycoplasma penetrans HF-2 1040839 NP_757586.1 CDS MYPE1990 NC_004432.1 252208 253086 D DNA polymerase I: 5'-3' exonuclease 252208..253086 Mycoplasma penetrans HF-2 1040840 NP_757587.1 CDS MYPE2000 NC_004432.1 253088 253921 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 253088..253921 Mycoplasma penetrans HF-2 1040841 NP_757588.1 CDS MYPE2010 NC_004432.1 253894 254514 D hypothetical protein 253894..254514 Mycoplasma penetrans HF-2 1040842 NP_757589.1 CDS MYPE2020 NC_004432.1 254666 255922 D hypothetical protein 254666..255922 Mycoplasma penetrans HF-2 1040843 NP_757590.1 CDS MYPE2030 NC_004432.1 255879 256910 D primosome component 255879..256910 Mycoplasma penetrans HF-2 1040844 NP_757591.1 CDS MYPE2040 NC_004432.1 257095 257730 D hypothetical protein 257095..257730 Mycoplasma penetrans HF-2 1040845 NP_757592.1 CDS MYPE2050 NC_004432.1 257827 259260 D replicative DNA helicase 257827..259260 Mycoplasma penetrans HF-2 1040846 NP_757593.1 CDS MYPE2060 NC_004432.1 259334 260545 D hypothetical protein 259334..260545 Mycoplasma penetrans HF-2 1040847 NP_757594.1 CDS MYPE2070 NC_004432.1 260583 261323 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 260583..261323 Mycoplasma penetrans HF-2 1040848 NP_757595.1 CDS MYPE2080 NC_004432.1 261398 262471 D in some Mycoplasma, this protein is fused to aspartyl/glutamyl-tRNA amidotransferase subunit C domain; hypothetical protein 261398..262471 Mycoplasma penetrans HF-2 1040849 NP_757596.1 CDS MYPE2090 NC_004432.1 262493 262771 D glutamyl-tRNA amidotransferase subunit C 262493..262771 Mycoplasma penetrans HF-2 1040850 NP_757597.1 CDS gatA NC_004432.1 262774 264177 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 262774..264177 Mycoplasma penetrans HF-2 1040851 NP_757598.1 CDS gatB NC_004432.1 264155 265600 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 264155..265600 Mycoplasma penetrans HF-2 1040852 NP_757599.1 CDS MYPE2120 NC_004432.1 265777 266370 R hypothetical protein complement(265777..266370) Mycoplasma penetrans HF-2 1040854 NP_757600.1 CDS MYPE2130 NC_004432.1 266507 269338 D cation-transporting P-type ATPase 266507..269338 Mycoplasma penetrans HF-2 1040855 NP_757601.1 CDS MYPE2140 NC_004432.1 269437 270303 D paralog family; hypothetical protein 269437..270303 Mycoplasma penetrans HF-2 1040856 NP_757602.1 CDS MYPE2150 NC_004432.1 270765 271658 D MYPE2140 paralog; hypothetical protein 270765..271658 Mycoplasma penetrans HF-2 1040857 NP_757603.1 CDS MYPE2160 NC_004432.1 271714 272568 D MYPE2140 paralog; hypothetical protein 271714..272568 Mycoplasma penetrans HF-2 1040858 NP_757604.1 CDS MYPE2170 NC_004432.1 272771 273532 R insertion sequence IS232 ATP-binding protein complement(272771..273532) Mycoplasma penetrans HF-2 1040859 NP_757605.1 CDS MYPE2180 NC_004432.1 273534 274946 R transposase for IS232-like insertion sequence element complement(273534..274946) Mycoplasma penetrans HF-2 1040860 NP_757606.1 CDS MYPE2190 NC_004432.1 275215 276354 D hypothetical protein 275215..276354 Mycoplasma penetrans HF-2 1040861 NP_757607.1 CDS MYPE2200 NC_004432.1 276441 278084 R ABC transporter ATP-binding protein complement(276441..278084) Mycoplasma penetrans HF-2 1040862 NP_757608.1 CDS MYPE2210 NC_004432.1 278077 279747 R ABC transporter ATP-binding protein complement(278077..279747) Mycoplasma penetrans HF-2 1040863 NP_757609.1 CDS MYPE2220 NC_004432.1 280126 282345 D hypothetical protein 280126..282345 Mycoplasma penetrans HF-2 1040864 NP_757610.1 CDS MYPE2230 NC_004432.1 282399 282794 D hypothetical protein 282399..282794 Mycoplasma penetrans HF-2 1040865 NP_757611.1 CDS MYPE2240 NC_004432.1 282801 283628 R hypothetical protein complement(282801..283628) Mycoplasma penetrans HF-2 1040866 NP_757612.1 CDS MYPE2250 NC_004432.1 283769 285043 R MYPE4220 paralog; hypothetical protein complement(283769..285043) Mycoplasma penetrans HF-2 1040867 NP_757613.1 CDS MYPE2260 NC_004432.1 285410 285835 D hypothetical protein 285410..285835 Mycoplasma penetrans HF-2 1040868 NP_757614.1 CDS MYPE2270 NC_004432.1 285919 286368 D hypothetical protein 285919..286368 Mycoplasma penetrans HF-2 1040869 NP_757615.1 CDS MYPE2280 NC_004432.1 286413 287063 D cytidylate kinase 286413..287063 Mycoplasma penetrans HF-2 1040870 NP_757616.1 CDS engA NC_004432.1 287066 288400 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 287066..288400 Mycoplasma penetrans HF-2 1040871 NP_757617.1 CDS MYPE2300 NC_004432.1 288390 289406 D NAD-dependent glycerol-3-phosphate dehydrogenase 288390..289406 Mycoplasma penetrans HF-2 1040872 NP_757618.1 CDS MYPE2310 NC_004432.1 289619 291175 R IS1202-like transposase complement(289619..291175) Mycoplasma penetrans HF-2 1040873 NP_757619.1 CDS MYPE2330 NC_004432.1 291534 292382 R hypothetical protein complement(291534..292382) Mycoplasma penetrans HF-2 1040876 NP_757620.1 CDS MYPE2340 NC_004432.1 292522 294078 D transposase 292522..294078 Mycoplasma penetrans HF-2 1040877 NP_757621.1 CDS MYPE2350 NC_004432.1 294686 295222 D MYPE2360 paralog; hypothetical protein 294686..295222 Mycoplasma penetrans HF-2 1040878 NP_757622.1 CDS MYPE2360 NC_004432.1 295417 296025 D low similarity to histidine kinase, paralog family; hypothetical protein 295417..296025 Mycoplasma penetrans HF-2 1040879 NP_757623.1 CDS MYPE2370 NC_004432.1 296149 296739 D MYPE2360 paralog; hypothetical protein 296149..296739 Mycoplasma penetrans HF-2 1040880 NP_757624.1 CDS MYPE2380 NC_004432.1 296876 297484 D MYPE2360 paralog; hypothetical protein 296876..297484 Mycoplasma penetrans HF-2 1040881 NP_757625.1 CDS MYPE2390 NC_004432.1 297729 298106 D hypothetical protein 297729..298106 Mycoplasma penetrans HF-2 1040882 NP_757626.1 CDS MYPE2400 NC_004432.1 298054 298515 D MYPE2360 paralog; hypothetical protein 298054..298515 Mycoplasma penetrans HF-2 1040883 NP_757627.1 CDS MYPE2410 NC_004432.1 298660 299196 D MYPE2360 paralog; hypothetical protein 298660..299196 Mycoplasma penetrans HF-2 1040884 NP_757628.1 CDS MYPE2420 NC_004432.1 299403 300095 D hypothetical protein 299403..300095 Mycoplasma penetrans HF-2 1040885 NP_757629.1 CDS MYPE2430 NC_004432.1 300102 301055 D hypothetical protein 300102..301055 Mycoplasma penetrans HF-2 1040886 NP_757630.1 CDS MYPE2440 NC_004432.1 301605 302633 D hypothetical protein 301605..302633 Mycoplasma penetrans HF-2 1040887 NP_757631.1 CDS MYPE2450 NC_004432.1 302904 303320 D hypothetical protein 302904..303320 Mycoplasma penetrans HF-2 1040888 NP_757632.1 CDS MYPE2460 NC_004432.1 303446 303979 D recombination protein U 303446..303979 Mycoplasma penetrans HF-2 1040889 NP_757633.1 CDS MYPE2470 NC_004432.1 304156 305961 D paralog family; ABC transporter ATP-binding protein 304156..305961 Mycoplasma penetrans HF-2 1040890 NP_757634.1 CDS MYPE2480 NC_004432.1 305942 307879 D ABC transporter ATP-binding protein 305942..307879 Mycoplasma penetrans HF-2 1040891 NP_757635.1 CDS MYPE2490 NC_004432.1 308014 308379 R DNA-binding histone-like protein HU-alpha complement(308014..308379) Mycoplasma penetrans HF-2 1040892 NP_757636.1 CDS MYPE2500 NC_004432.1 308660 311680 D hypothetical protein 308660..311680 Mycoplasma penetrans HF-2 1040893 NP_757637.1 CDS MYPE2510 NC_004432.1 311855 313894 D hypothetical protein 311855..313894 Mycoplasma penetrans HF-2 1040894 NP_757638.1 CDS MYPE2520 NC_004432.1 313900 315948 D hypothetical protein 313900..315948 Mycoplasma penetrans HF-2 1040895 NP_757639.1 CDS MYPE2530 NC_004432.1 316009 317346 D signal recognition particle GTPase 316009..317346 Mycoplasma penetrans HF-2 1040896 NP_757640.1 CDS MYPE2540 NC_004432.1 317424 318161 D Zn-dependent protease 317424..318161 Mycoplasma penetrans HF-2 1040897 NP_757641.1 CDS MYPE2545 NC_004432.1 318184 318369 D MYPE2560 paralog, partial; hypothetical protein 318184..318369 Mycoplasma penetrans HF-2 1040898 NP_757642.1 CDS MYPE2550 NC_004432.1 318571 321945 D MYPE2560 paralog, partial; hypothetical protein 318571..321945 Mycoplasma penetrans HF-2 1040899 NP_757643.1 CDS MYPE2560 NC_004432.1 322127 325501 D paralog family; hypothetical protein 322127..325501 Mycoplasma penetrans HF-2 1040900 NP_757644.1 CDS MYPE2570 NC_004432.1 325592 326920 R hypothetical protein complement(325592..326920) Mycoplasma penetrans HF-2 1040901 NP_757645.1 CDS MYPE2580 NC_004432.1 327218 330610 D MYPE2560 paralog; hypothetical protein 327218..330610 Mycoplasma penetrans HF-2 1040902 NP_757646.1 CDS MYPE2590 NC_004432.1 330665 331237 R acetyltransferase complement(330665..331237) Mycoplasma penetrans HF-2 1040903 NP_757647.1 CDS MYPE2600 NC_004432.1 331244 331825 R acetyltransferase complement(331244..331825) Mycoplasma penetrans HF-2 1040904 NP_757648.1 CDS MYPE2610 NC_004432.1 332074 335460 D MYPE2560 paralog; hypothetical protein 332074..335460 Mycoplasma penetrans HF-2 1040905 NP_757649.1 CDS MYPE2620 NC_004432.1 335914 337473 D P35 lipoprotein 335914..337473 Mycoplasma penetrans HF-2 1040906 NP_757650.1 CDS MYPE2630 NC_004432.1 337750 339306 D P35 lipoprotein 337750..339306 Mycoplasma penetrans HF-2 1040907 NP_757651.1 CDS MYPE2640 NC_004432.1 339473 340699 D permease 339473..340699 Mycoplasma penetrans HF-2 1040908 NP_757652.1 CDS MYPE2650 NC_004432.1 340722 341705 D Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynthes; D-lactate dehydrogenase 340722..341705 Mycoplasma penetrans HF-2 1040910 NP_757653.1 CDS MYPE2660 NC_004432.1 341814 345266 D MYPE2560 paralog; hypothetical protein 341814..345266 Mycoplasma penetrans HF-2 1040911 NP_757654.1 CDS MYPE2670 NC_004432.1 345473 348841 D MYPE2560 paralog; hypothetical protein 345473..348841 Mycoplasma penetrans HF-2 1040912 NP_757655.1 CDS MYPE2680 NC_004432.1 348982 352377 D MYPE2560 paralog; hypothetical protein 348982..352377 Mycoplasma penetrans HF-2 1040913 NP_757656.1 CDS MYPE2690 NC_004432.1 352719 353825 D P35 lipoprotein 352719..353825 Mycoplasma penetrans HF-2 1040914 NP_757657.1 CDS MYPE2700 NC_004432.1 354128 355279 D P35 lipoprotein 354128..355279 Mycoplasma penetrans HF-2 1040915 NP_757658.1 CDS MYPE2710 NC_004432.1 355503 358874 D hypothetical protein 355503..358874 Mycoplasma penetrans HF-2 1040916 NP_757659.1 CDS MYPE2715 NC_004432.1 359115 359294 D hypothetical protein 359115..359294 Mycoplasma penetrans HF-2 1040917 NP_757660.1 CDS MYPE2720 NC_004432.1 359352 359810 D hypothetical protein 359352..359810 Mycoplasma penetrans HF-2 1040918 NP_757661.1 CDS glyA NC_004432.1 359871 361202 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(359871..361202) Mycoplasma penetrans HF-2 1040920 NP_757662.1 CDS MYPE2740 NC_004432.1 361235 362935 R threonyl-tRNA synthetase complement(361235..362935) Mycoplasma penetrans HF-2 1040921 NP_757663.1 CDS MYPE2750 NC_004432.1 363053 363943 D hypothetical protein 363053..363943 Mycoplasma penetrans HF-2 1040922 NP_757664.1 CDS MYPE2760 NC_004432.1 363963 364634 D hypothetical protein 363963..364634 Mycoplasma penetrans HF-2 1040923 NP_757665.1 CDS MYPE2770 NC_004432.1 364650 365372 D cytidine diphosphocholine pyrophosphorylase 364650..365372 Mycoplasma penetrans HF-2 1040924 NP_757666.1 CDS ruvB NC_004432.1 365412 366380 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(365412..366380) Mycoplasma penetrans HF-2 1040925 NP_757667.1 CDS MYPE2790 NC_004432.1 366346 367005 R holliday junction DNA helicase complement(366346..367005) Mycoplasma penetrans HF-2 1040926 NP_757668.1 CDS MYPE2800 NC_004432.1 367157 367420 R phosphocarrier HPr protein complement(367157..367420) Mycoplasma penetrans HF-2 1040927 NP_757669.1 CDS MYPE2810 NC_004432.1 367537 369093 R cardiolipin synthase complement(367537..369093) Mycoplasma penetrans HF-2 1040928 NP_757670.1 CDS MYPE2820 NC_004432.1 369209 371023 D oligoendopeptidase F 369209..371023 Mycoplasma penetrans HF-2 1040929 NP_757671.1 CDS MYPE2830 NC_004432.1 371025 371807 D hypothetical protein 371025..371807 Mycoplasma penetrans HF-2 1040930 NP_757672.1 CDS MYPE2840 NC_004432.1 371804 373588 R hypothetical protein complement(371804..373588) Mycoplasma penetrans HF-2 1040931 NP_757673.1 CDS MYPE2850 NC_004432.1 373629 373850 D hypothetical protein 373629..373850 Mycoplasma penetrans HF-2 1040932 NP_757674.1 CDS hisS NC_004432.1 374053 375333 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 374053..375333 Mycoplasma penetrans HF-2 1040933 NP_757675.1 CDS aspS NC_004432.1 375348 377090 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 375348..377090 Mycoplasma penetrans HF-2 1040934 NP_757676.1 CDS MYPE2880 NC_004432.1 377096 377758 D S-adenosylmethionine-dependent methyltransferase 377096..377758 Mycoplasma penetrans HF-2 1040935 NP_757677.1 CDS MYPE2890 NC_004432.1 377857 379401 D hypothetical protein 377857..379401 Mycoplasma penetrans HF-2 1040936 NP_757678.1 CDS MYPE2900 NC_004432.1 379569 380330 D phage integrase family; recombinase 379569..380330 Mycoplasma penetrans HF-2 1040937 NP_757679.1 CDS MYPE2910 NC_004432.1 380395 381024 D hypothetical protein 380395..381024 Mycoplasma penetrans HF-2 1040938 NP_757680.1 CDS MYPE2920 NC_004432.1 381103 383154 R hypothetical protein complement(381103..383154) Mycoplasma penetrans HF-2 1040939 NP_757681.1 CDS MYPE2930 NC_004432.1 383474 384013 D ferritin 383474..384013 Mycoplasma penetrans HF-2 1040940 NP_757682.1 CDS MYPE2940 NC_004432.1 384145 384324 D similar to beta-glycosidase lacS of Sulfolobus solfataricus AE006893 Expect=7.5e-01, Identities=35%; hypothetical protein 384145..384324 Mycoplasma penetrans HF-2 1040941 NP_757683.1 CDS MYPE2950 NC_004432.1 384825 385379 D NADPH-dependent reductase 384825..385379 Mycoplasma penetrans HF-2 1040942 NP_757684.1 CDS MYPE2960 NC_004432.1 385404 385913 D MarR family transcriptional regulator 385404..385913 Mycoplasma penetrans HF-2 1040943 NP_757685.1 CDS MYPE2970 NC_004432.1 385989 386561 R MutT-like hydrolase complement(385989..386561) Mycoplasma penetrans HF-2 1040944 NP_757686.1 CDS MYPE2980 NC_004432.1 386784 387416 D hypothetical protein 386784..387416 Mycoplasma penetrans HF-2 1040945 NP_757687.1 CDS MYPE2990 NC_004432.1 387437 388342 D catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 387437..388342 Mycoplasma penetrans HF-2 1040946 NP_757688.1 CDS MYPE3000 NC_004432.1 388329 389399 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 388329..389399 Mycoplasma penetrans HF-2 1040947 NP_757689.1 CDS MYPE3010 NC_004432.1 389456 390160 R potassium uptake protein KtrA complement(389456..390160) Mycoplasma penetrans HF-2 1040948 NP_757690.1 CDS MYPE3020 NC_004432.1 390365 392245 D integral membrane protein 390365..392245 Mycoplasma penetrans HF-2 1040949 NP_757691.1 CDS MYPE3030 NC_004432.1 392248 394284 D ABC transporter ATP-binding protein 392248..394284 Mycoplasma penetrans HF-2 1040950 NP_757692.1 CDS MYPE3040 NC_004432.1 394387 395235 D hypothetical protein 394387..395235 Mycoplasma penetrans HF-2 1040951 NP_757693.1 CDS MYPE3050 NC_004432.1 395232 395882 R d-ribulose-5-phosphate 3 epimerase complement(395232..395882) Mycoplasma penetrans HF-2 1040952 NP_757694.1 CDS MYPE3060 NC_004432.1 395995 397560 D hypothetical protein 395995..397560 Mycoplasma penetrans HF-2 1040953 NP_757695.1 CDS MYPE3070 NC_004432.1 397613 398605 D integral membrane protein 397613..398605 Mycoplasma penetrans HF-2 1040954 NP_757696.1 CDS MYPE3080 NC_004432.1 398544 399470 D paralog family; ABC transporter ATP-binding protein 398544..399470 Mycoplasma penetrans HF-2 1040955 NP_757697.1 CDS MYPE3090 NC_004432.1 399578 401251 D hypothetical protein 399578..401251 Mycoplasma penetrans HF-2 1040956 NP_757698.1 CDS MYPE3100 NC_004432.1 401408 402544 D hypothetical protein 401408..402544 Mycoplasma penetrans HF-2 1040957 NP_757699.1 CDS MYPE3110 NC_004432.1 403080 403709 R ortholog of YwnB of Bacillus subtilis; hypothetical protein complement(403080..403709) Mycoplasma penetrans HF-2 1040958 NP_757700.1 CDS MYPE3120 NC_004432.1 403859 404290 R ortholog of YwnA of Bacillus subtilis; hypothetical protein complement(403859..404290) Mycoplasma penetrans HF-2 1040959 NP_757701.1 CDS MYPE3130 NC_004432.1 404776 405624 D choline kinase 404776..405624 Mycoplasma penetrans HF-2 1040961 NP_757702.1 CDS MYPE3140 NC_004432.1 406653 410201 D MYPE2560 paralog; hypothetical protein 406653..410201 Mycoplasma penetrans HF-2 1040962 NP_757703.1 CDS MYPE3150 NC_004432.1 410394 411845 D inosine-5'-monophosphate dehydrogenase 410394..411845 Mycoplasma penetrans HF-2 1040963 NP_757704.1 CDS MYPE3155 NC_004432.1 412385 412567 R hypothetical protein complement(412385..412567) Mycoplasma penetrans HF-2 1040964 NP_757705.1 CDS MYPE3160 NC_004432.1 412846 413712 D 3-hydroxyisobutyrate dehydrogenase 412846..413712 Mycoplasma penetrans HF-2 1040965 NP_757706.1 CDS MYPE3170 NC_004432.1 413714 416050 D HAD family phosphatase 413714..416050 Mycoplasma penetrans HF-2 1040967 NP_757707.1 CDS MYPE3180 NC_004432.1 416257 417504 D glucosamine-6-phosphate isomerase 416257..417504 Mycoplasma penetrans HF-2 1040968 NP_757708.1 CDS MYPE3190 NC_004432.1 417731 420685 D hypothetical protein 417731..420685 Mycoplasma penetrans HF-2 1040969 NP_757709.1 CDS MYPE3200 NC_004432.1 420777 421331 R DNA-3-methyladenine glycosidase I complement(420777..421331) Mycoplasma penetrans HF-2 1040970 NP_757710.1 CDS MYPE3210 NC_004432.1 421510 424515 D hypothetical protein 421510..424515 Mycoplasma penetrans HF-2 1040971 NP_757711.1 CDS mraW NC_004432.1 424743 425681 D S-adenosyl-methyltransferase MraW 424743..425681 Mycoplasma penetrans HF-2 1040972 NP_757712.1 CDS MYPE3230 NC_004432.1 425681 426841 D hypothetical protein 425681..426841 Mycoplasma penetrans HF-2 1040973 NP_757713.1 CDS MYPE3240 NC_004432.1 427007 427531 D cation-transporting p-type ATPase 427007..427531 Mycoplasma penetrans HF-2 1040974 NP_757714.1 CDS MYPE3250 NC_004432.1 427627 430041 D cation-transporting p-type ATPase 427627..430041 Mycoplasma penetrans HF-2 1040975 NP_757715.1 CDS MYPE3260 NC_004432.1 430065 430406 D thioredoxin 430065..430406 Mycoplasma penetrans HF-2 1040976 NP_757716.1 CDS MYPE3270 NC_004432.1 430503 431150 R large-conductance mechanosensitive channel complement(430503..431150) Mycoplasma penetrans HF-2 1040977 NP_757717.1 CDS MYPE3280 NC_004432.1 431282 431854 D hypothetical protein 431282..431854 Mycoplasma penetrans HF-2 1040978 NP_757718.1 CDS MYPE3290 NC_004432.1 431890 432795 D hypothetical protein 431890..432795 Mycoplasma penetrans HF-2 1040979 NP_757719.1 CDS secG NC_004432.1 432923 433153 D preprotein translocase subunit SecG 432923..433153 Mycoplasma penetrans HF-2 1040980 NP_757720.1 CDS MYPE3310 NC_004432.1 433163 435346 D 3'-5' exoribonuclease 433163..435346 Mycoplasma penetrans HF-2 1040981 NP_757721.1 CDS MYPE3320 NC_004432.1 435571 436566 D with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK 435571..436566 Mycoplasma penetrans HF-2 1040982 NP_757722.1 CDS MYPE3330 NC_004432.1 436575 437198 D dihydroxyacetone kinase 436575..437198 Mycoplasma penetrans HF-2 1040983 NP_757723.1 CDS MYPE3340 NC_004432.1 437202 437603 D PTS system enzyme I 437202..437603 Mycoplasma penetrans HF-2 1040984 NP_757724.1 CDS MYPE3350 NC_004432.1 437778 438230 D hypothetical protein 437778..438230 Mycoplasma penetrans HF-2 1040985 NP_757725.1 CDS MYPE3360 NC_004432.1 438223 438615 D diacylglycerol kinase 438223..438615 Mycoplasma penetrans HF-2 1040986 NP_757726.1 CDS MYPE3370 NC_004432.1 438704 439516 D GTP-binding protein Era 438704..439516 Mycoplasma penetrans HF-2 1040987 NP_757727.1 CDS MYPE3380 NC_004432.1 439516 440220 D hypothetical protein 439516..440220 Mycoplasma penetrans HF-2 1040988 NP_757728.1 CDS MYPE3390 NC_004432.1 440246 441634 D Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 440246..441634 Mycoplasma penetrans HF-2 1040989 NP_757729.1 CDS MYPE3400 NC_004432.1 441624 443690 D DNA primase 441624..443690 Mycoplasma penetrans HF-2 1040990 NP_757730.1 CDS MYPE3410 NC_004432.1 444780 445322 D MYPE8480 paralog; hypothetical protein 444780..445322 Mycoplasma penetrans HF-2 1040991 NP_757731.1 CDS MYPE3420 NC_004432.1 445408 445848 D MYPE8480 paralog; hypothetical protein 445408..445848 Mycoplasma penetrans HF-2 1040992 NP_757732.1 CDS MYPE3430 NC_004432.1 446130 446402 D MYPE8480 paralog; hypothetical protein 446130..446402 Mycoplasma penetrans HF-2 1040993 NP_757733.1 CDS MYPE3440 NC_004432.1 446789 448453 R integral membrane protein complement(446789..448453) Mycoplasma penetrans HF-2 1040994 NP_757734.1 CDS MYPE3450 NC_004432.1 448849 450246 D amino acid permease 448849..450246 Mycoplasma penetrans HF-2 1040995 NP_757735.1 CDS MYPE3460 NC_004432.1 450327 451229 R hypothetical protein complement(450327..451229) Mycoplasma penetrans HF-2 1040996 NP_757736.1 CDS MYPE3490 NC_004432.1 452334 453665 D MYPE3080 paralog; ABC transporter ATP-binding protein 452334..453665 Mycoplasma penetrans HF-2 1041007 NP_757737.1 CDS MYPE3500 NC_004432.1 453677 454114 D histidine triad protein HIT 453677..454114 Mycoplasma penetrans HF-2 1041009 NP_757738.1 CDS MYPE3510 NC_004432.1 454200 454409 D hypothetical protein 454200..454409 Mycoplasma penetrans HF-2 1041010 NP_757739.1 CDS MYPE3520 NC_004432.1 455243 455548 D hypothetical protein 455243..455548 Mycoplasma penetrans HF-2 1041011 NP_757740.1 CDS smpB NC_004432.1 455952 456392 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 455952..456392 Mycoplasma penetrans HF-2 1041012 NP_757741.1 CDS MYPE3540 NC_004432.1 456451 457626 D hippurate hydrolase 456451..457626 Mycoplasma penetrans HF-2 1041013 NP_757742.1 CDS MYPE3550 NC_004432.1 457642 459048 D hypothetical protein 457642..459048 Mycoplasma penetrans HF-2 1041014 NP_757743.1 CDS MYPE3560 NC_004432.1 459060 460013 D MYPE960 paralog; ABC transporter ATP-binding protein 459060..460013 Mycoplasma penetrans HF-2 1041015 NP_757744.1 CDS MYPE3570 NC_004432.1 460360 461895 D ABC transporter ATP-binding protein 460360..461895 Mycoplasma penetrans HF-2 1041016 NP_757745.1 CDS MYPE3580 NC_004432.1 462043 464679 D paralog family; hypothetical protein 462043..464679 Mycoplasma penetrans HF-2 1041017 NP_757746.1 CDS MYPE3590 NC_004432.1 464867 467509 D MYPE3580 paralog; hypothetical protein 464867..467509 Mycoplasma penetrans HF-2 1041018 NP_757747.1 CDS MYPE3600 NC_004432.1 467710 470352 D MYPE3580 paralog; hypothetical protein 467710..470352 Mycoplasma penetrans HF-2 1041019 NP_757748.1 CDS MYPE3610 NC_004432.1 470542 473187 D MYPE3580 paralog; hypothetical protein 470542..473187 Mycoplasma penetrans HF-2 1041020 NP_757749.1 CDS MYPE3620 NC_004432.1 473282 474910 D hypothetical protein 473282..474910 Mycoplasma penetrans HF-2 1041021 NP_757750.1 CDS MYPE3630 NC_004432.1 475094 476080 D MYPE3080 paralog; ABC transporter ATP-binding protein 475094..476080 Mycoplasma penetrans HF-2 1041022 NP_757751.1 CDS MYPE3640 NC_004432.1 476233 477228 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 476233..477228 Mycoplasma penetrans HF-2 1041023 NP_757752.1 CDS rnc NC_004432.1 477203 477937 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 477203..477937 Mycoplasma penetrans HF-2 1041024 NP_757753.1 CDS MYPE3660 NC_004432.1 477996 478436 R hypothetical protein complement(477996..478436) Mycoplasma penetrans HF-2 1041025 NP_757754.1 CDS greA NC_004432.1 478578 479063 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 478578..479063 Mycoplasma penetrans HF-2 1041026 NP_757755.1 CDS MYPE3700 NC_004432.1 479674 480987 D hypothetical protein 479674..480987 Mycoplasma penetrans HF-2 1041073 NP_757756.1 CDS MYPE3710 NC_004432.1 481048 481518 D NADH dehydrogenase 481048..481518 Mycoplasma penetrans HF-2 1041076 NP_757757.1 CDS MYPE3720 NC_004432.1 481623 481862 D hypothetical protein 481623..481862 Mycoplasma penetrans HF-2 1041084 NP_757758.1 CDS MYPE3730 NC_004432.1 482025 482777 D triose phosphate isomerase 482025..482777 Mycoplasma penetrans HF-2 1041085 NP_757759.1 CDS MYPE3740 NC_004432.1 482767 484287 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 482767..484287 Mycoplasma penetrans HF-2 1041089 NP_757760.1 CDS eno NC_004432.1 484414 485766 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 484414..485766 Mycoplasma penetrans HF-2 1041095 NP_757761.1 CDS MYPE3760 NC_004432.1 485853 486437 R hypothetical protein complement(485853..486437) Mycoplasma penetrans HF-2 1041096 NP_757762.1 CDS MYPE3770 NC_004432.1 486573 487211 D hypothetical protein 486573..487211 Mycoplasma penetrans HF-2 1041097 NP_757763.1 CDS MYPE3780 NC_004432.1 487325 488299 D hypothetical protein 487325..488299 Mycoplasma penetrans HF-2 1041098 NP_757764.1 CDS MYPE3790 NC_004432.1 488365 490482 R ATP-dependent protease binding subunit complement(488365..490482) Mycoplasma penetrans HF-2 1041099 NP_757765.1 CDS MYPE3800 NC_004432.1 490735 491457 D hypothetical protein 490735..491457 Mycoplasma penetrans HF-2 1041100 NP_757766.1 CDS MYPE3810 NC_004432.1 491758 492075 D hypothetical protein 491758..492075 Mycoplasma penetrans HF-2 1041101 NP_757767.1 CDS MYPE3820 NC_004432.1 492101 493996 D hypothetical protein 492101..493996 Mycoplasma penetrans HF-2 1041104 NP_757768.1 CDS MYPE3830 NC_004432.1 494341 494712 D hypothetical protein 494341..494712 Mycoplasma penetrans HF-2 1041105 NP_757769.1 CDS MYPE3840 NC_004432.1 494732 499027 D hypothetical protein 494732..499027 Mycoplasma penetrans HF-2 1041109 NP_757770.1 CDS MYPE3850 NC_004432.1 499041 502676 D hypothetical protein 499041..502676 Mycoplasma penetrans HF-2 1041112 NP_757771.1 CDS MYPE3860 NC_004432.1 502690 506826 D hypothetical protein 502690..506826 Mycoplasma penetrans HF-2 1041113 NP_757772.1 CDS MYPE3870 NC_004432.1 507117 508385 D dihydroorotase 507117..508385 Mycoplasma penetrans HF-2 1041115 NP_757773.2 CDS rpsO NC_004432.1 508626 508898 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 508626..508898 Mycoplasma penetrans HF-2 1041118 NP_757774.1 CDS leuS NC_004432.1 508932 511331 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 508932..511331 Mycoplasma penetrans HF-2 1041130 NP_757775.2 CDS rpmG NC_004432.1 511376 511537 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 511376..511537 Mycoplasma penetrans HF-2 1041131 NP_757776.1 CDS MYPE3910 NC_004432.1 511583 512635 D aminopeptidase 511583..512635 Mycoplasma penetrans HF-2 1041132 NP_757777.1 CDS MYPE3920 NC_004432.1 512783 514168 D aldehyde dehydrogenase 512783..514168 Mycoplasma penetrans HF-2 1041133 NP_757778.1 CDS MYPE3930 NC_004432.1 514177 514980 D esterase 514177..514980 Mycoplasma penetrans HF-2 1041134 NP_757779.1 CDS MYPE3940 NC_004432.1 515030 515278 D hypothetical protein 515030..515278 Mycoplasma penetrans HF-2 1041135 NP_757780.1 CDS MYPE3950 NC_004432.1 515414 516268 D hypothetical protein 515414..516268 Mycoplasma penetrans HF-2 1041136 NP_757781.1 CDS MYPE3960 NC_004432.1 516292 518019 D two-component regulator 516292..518019 Mycoplasma penetrans HF-2 1041137 NP_757782.1 CDS MYPE3970 NC_004432.1 518080 519546 D hypothetical protein 518080..519546 Mycoplasma penetrans HF-2 1041138 NP_757783.1 CDS MYPE3980 NC_004432.1 519652 520161 D thiol peroxidase 519652..520161 Mycoplasma penetrans HF-2 1041140 NP_757784.1 CDS MYPE3985 NC_004432.1 520294 520491 R hypothetical protein complement(520294..520491) Mycoplasma penetrans HF-2 1041169 NP_757785.1 CDS MYPE3990 NC_004432.1 520708 523365 D hypothetical protein 520708..523365 Mycoplasma penetrans HF-2 1041170 NP_757786.1 CDS MYPE4000 NC_004432.1 523557 526139 D hypothetical protein 523557..526139 Mycoplasma penetrans HF-2 1041171 NP_757787.1 CDS MYPE4010 NC_004432.1 526614 527483 R hypothetical protein complement(526614..527483) Mycoplasma penetrans HF-2 1041172 NP_757788.1 CDS MYPE4020 NC_004432.1 527560 528378 R integral membrane protein complement(527560..528378) Mycoplasma penetrans HF-2 1041173 NP_757789.1 CDS MYPE4030 NC_004432.1 528514 528762 R ribosomal protein L28 complement(528514..528762) Mycoplasma penetrans HF-2 1041174 NP_757790.1 CDS asnC NC_004432.1 528972 530333 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 528972..530333 Mycoplasma penetrans HF-2 1041175 NP_757791.1 CDS MYPE4050 NC_004432.1 530361 531014 D phosphatidylglycerophosphate synthase 530361..531014 Mycoplasma penetrans HF-2 1041176 NP_757792.1 CDS MYPE4060 NC_004432.1 531024 532304 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 531024..532304 Mycoplasma penetrans HF-2 1041177 NP_757793.1 CDS MYPE4070 NC_004432.1 533074 536010 D hypothetical protein 533074..536010 Mycoplasma penetrans HF-2 1041178 NP_757794.1 CDS MYPE4080 NC_004432.1 536291 538108 D hypothetical protein 536291..538108 Mycoplasma penetrans HF-2 1041179 NP_757795.1 CDS MYPE4090 NC_004432.1 538342 540138 D MYPE2470 paralog; ABC transporter ATP-binding protein 538342..540138 Mycoplasma penetrans HF-2 1041180 NP_757796.1 CDS MYPE4100 NC_004432.1 540141 542132 D MYPE2470 paralog; ABC transporter ATP-binding protein 540141..542132 Mycoplasma penetrans HF-2 1041181 NP_757797.1 CDS MYPE4110 NC_004432.1 542141 543529 D aldehyde dehydrogenase 542141..543529 Mycoplasma penetrans HF-2 1041182 NP_757798.1 CDS MYPE4120 NC_004432.1 543652 543930 D hypothetical protein 543652..543930 Mycoplasma penetrans HF-2 1041183 NP_757799.1 CDS MYPE4130 NC_004432.1 543945 545666 D dihydroacetone kinase 543945..545666 Mycoplasma penetrans HF-2 1041184 NP_757800.1 CDS MYPE4140 NC_004432.1 545803 547926 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 545803..547926 Mycoplasma penetrans HF-2 1041185 NP_757801.1 CDS MYPE4150 NC_004432.1 547974 548729 R hypothetical protein complement(547974..548729) Mycoplasma penetrans HF-2 1041186 NP_757802.1 CDS MYPE4160 NC_004432.1 548811 549053 R acyl carrier protein complement(548811..549053) Mycoplasma penetrans HF-2 1041187 NP_757803.1 CDS MYPE4170 NC_004432.1 549175 549516 R excinuclease complement(549175..549516) Mycoplasma penetrans HF-2 1041188 NP_757804.1 CDS MYPE4180 NC_004432.1 549650 551062 D transposase for IS232-like insertion sequence element 549650..551062 Mycoplasma penetrans HF-2 1041189 NP_757805.1 CDS MYPE4190 NC_004432.1 551064 551825 D insertion sequence IS232 ATP-binding protein 551064..551825 Mycoplasma penetrans HF-2 1041191 NP_757806.1 CDS MYPE4200 NC_004432.1 551771 552676 R hypothetical protein complement(551771..552676) Mycoplasma penetrans HF-2 1041192 NP_757807.1 CDS MYPE4210 NC_004432.1 553029 554003 D hypothetical protein 553029..554003 Mycoplasma penetrans HF-2 1041193 NP_757808.1 CDS MYPE4220 NC_004432.1 554182 555438 D paralog family; hypothetical protein 554182..555438 Mycoplasma penetrans HF-2 1041194 NP_757809.1 CDS MYPE4230 NC_004432.1 555574 556953 R paralog family, similar to Pfam domain Archaea bacterial proteins of unknown function; hypothetical protein complement(555574..556953) Mycoplasma penetrans HF-2 1041195 NP_757810.1 CDS MYPE4240 NC_004432.1 557199 557510 D hypothetical protein 557199..557510 Mycoplasma penetrans HF-2 1041196 NP_757811.1 CDS MYPE4250 NC_004432.1 557591 559162 D hypothetical protein 557591..559162 Mycoplasma penetrans HF-2 1041198 NP_757812.1 CDS MYPE4260 NC_004432.1 559204 560130 D 6-phosphogluconate dehydrogenase 559204..560130 Mycoplasma penetrans HF-2 1041199 NP_757813.1 CDS MYPE4270 NC_004432.1 560260 561105 D hypothetical protein 560260..561105 Mycoplasma penetrans HF-2 1041200 NP_757814.1 CDS MYPE4280 NC_004432.1 561122 561688 D proline dipeptidase 561122..561688 Mycoplasma penetrans HF-2 1041201 NP_757815.1 CDS MYPE4290 NC_004432.1 561795 562913 D adenylosuccinate synthetase 561795..562913 Mycoplasma penetrans HF-2 1041202 NP_757816.1 CDS MYPE4300 NC_004432.1 563054 564295 D hypothetical protein 563054..564295 Mycoplasma penetrans HF-2 1041203 NP_757817.1 CDS MYPE4310 NC_004432.1 564326 566824 D similar to immuno-dominant variable surface antigen of Entamoeba histolytica CAA38847.1, Expect=3.0e-16, Identities=29%; integral membrane protein 564326..566824 Mycoplasma penetrans HF-2 1041204 NP_757818.1 CDS MYPE4320 NC_004432.1 566827 567645 D integral membrane protein 566827..567645 Mycoplasma penetrans HF-2 1041205 NP_757819.1 CDS MYPE4330 NC_004432.1 567854 569488 D paralog family; hypothetical protein 567854..569488 Mycoplasma penetrans HF-2 1041206 NP_757820.1 CDS MYPE4340 NC_004432.1 569953 571431 D MYPE4340 paralog; hypothetical protein 569953..571431 Mycoplasma penetrans HF-2 1041207 NP_757821.1 CDS MYPE4350 NC_004432.1 571884 573491 D MYPE4340 paralog; hypothetical protein 571884..573491 Mycoplasma penetrans HF-2 1041208 NP_757822.1 CDS MYPE4360 NC_004432.1 573754 575310 D MYPE4340 paralog; hypothetical protein 573754..575310 Mycoplasma penetrans HF-2 1041209 NP_757823.1 CDS MYPE4370 NC_004432.1 575507 575845 D hypothetical protein 575507..575845 Mycoplasma penetrans HF-2 1041210 NP_757824.1 CDS MYPE4380 NC_004432.1 575939 577297 D membrane nuclease 575939..577297 Mycoplasma penetrans HF-2 1041211 NP_757825.1 CDS MYPE4390 NC_004432.1 577350 577676 R hypothetical protein complement(577350..577676) Mycoplasma penetrans HF-2 1041212 NP_757826.1 CDS MYPE4400 NC_004432.1 577744 578289 R catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase complement(577744..578289) Mycoplasma penetrans HF-2 1041213 NP_757827.1 CDS MYPE4410 NC_004432.1 578452 579363 D integral membrane protein 578452..579363 Mycoplasma penetrans HF-2 1041214 NP_757828.1 CDS rplU NC_004432.1 579621 579923 D 50S ribosomal protein L21 579621..579923 Mycoplasma penetrans HF-2 1041215 NP_757829.1 CDS MYPE4430 NC_004432.1 579928 580236 D hypothetical protein 579928..580236 Mycoplasma penetrans HF-2 1041216 NP_757830.1 CDS rpmA NC_004432.1 580240 580527 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 580240..580527 Mycoplasma penetrans HF-2 1041217 NP_757831.1 CDS MYPE4450 NC_004432.1 580606 581082 D hypothetical protein 580606..581082 Mycoplasma penetrans HF-2 1041218 NP_757832.1 CDS MYPE4460 NC_004432.1 581220 581858 D d-ribulose-5-phosphate 3 epimerase 581220..581858 Mycoplasma penetrans HF-2 1041219 NP_757833.1 CDS MYPE4470 NC_004432.1 581933 583861 D BglG family transcriptional antiterminator 581933..583861 Mycoplasma penetrans HF-2 1041220 NP_757834.1 CDS MYPE4480 NC_004432.1 583867 584301 D PTS system enzyme IIA component 583867..584301 Mycoplasma penetrans HF-2 1041221 NP_757835.1 CDS MYPE4490 NC_004432.1 584304 584594 D hypothetical protein 584304..584594 Mycoplasma penetrans HF-2 1041223 NP_757836.1 CDS ulaA NC_004432.1 584630 586141 D membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 584630..586141 Mycoplasma penetrans HF-2 1041224 NP_757837.1 CDS MYPE4510 NC_004432.1 586141 588111 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 586141..588111 Mycoplasma penetrans HF-2 1041226 NP_757838.1 CDS MYPE4520 NC_004432.1 588098 588448 D HAD family phosphatase 588098..588448 Mycoplasma penetrans HF-2 1041230 NP_757839.1 CDS MYPE4530 NC_004432.1 588429 588746 D hypothetical protein 588429..588746 Mycoplasma penetrans HF-2 1041233 NP_757840.1 CDS MYPE4540 NC_004432.1 588932 591994 D PTS system enzyme IIBC components 588932..591994 Mycoplasma penetrans HF-2 1041234 NP_757841.1 CDS MYPE4550 NC_004432.1 592078 593508 D beta glucosidase 592078..593508 Mycoplasma penetrans HF-2 1041235 NP_757842.1 CDS MYPE4560 NC_004432.1 593532 594965 D beta glucosidase 593532..594965 Mycoplasma penetrans HF-2 1041238 NP_757843.1 CDS MYPE4570 NC_004432.1 595023 595898 R hypothetical protein complement(595023..595898) Mycoplasma penetrans HF-2 1041239 NP_757844.1 CDS MYPE4580 NC_004432.1 595901 596908 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(595901..596908) Mycoplasma penetrans HF-2 1041240 NP_757845.1 CDS MYPE4590 NC_004432.1 597066 597569 D hypothetical protein 597066..597569 Mycoplasma penetrans HF-2 1041241 NP_757846.1 CDS MYPE4600 NC_004432.1 597589 598353 D hypothetical protein 597589..598353 Mycoplasma penetrans HF-2 1041244 NP_757847.1 CDS MYPE4610 NC_004432.1 598353 598730 D hypothetical protein 598353..598730 Mycoplasma penetrans HF-2 1041246 NP_757848.1 CDS MYPE4620 NC_004432.1 598846 599940 R alcohol dehydrogenase complement(598846..599940) Mycoplasma penetrans HF-2 1041247 NP_757849.1 CDS MYPE4630 NC_004432.1 600204 601106 D paralog family; hypothetical protein 600204..601106 Mycoplasma penetrans HF-2 1041248 NP_757850.1 CDS MYPE4640 NC_004432.1 601297 601554 D hypothetical protein 601297..601554 Mycoplasma penetrans HF-2 1041249 NP_757851.1 CDS MYPE4650 NC_004432.1 601547 602470 D MYPE4630 paralog; hypothetical protein 601547..602470 Mycoplasma penetrans HF-2 1041250 NP_757852.1 CDS MYPE4660 NC_004432.1 602580 603440 D MYPE4630 paralog; hypothetical protein 602580..603440 Mycoplasma penetrans HF-2 1041251 NP_757853.1 CDS MYPE4680 NC_004432.1 603698 604621 D MYPE4630 paralog; hypothetical protein 603698..604621 Mycoplasma penetrans HF-2 1041252 NP_757854.1 CDS MYPE4690 NC_004432.1 604747 606036 D glucose-6-phosphate isomerase 604747..606036 Mycoplasma penetrans HF-2 1041253 NP_757855.1 CDS MYPE4700 NC_004432.1 606148 607233 D hypothetical protein 606148..607233 Mycoplasma penetrans HF-2 1041254 NP_757856.1 CDS MYPE4710 NC_004432.1 607304 608740 D NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 607304..608740 Mycoplasma penetrans HF-2 1041294 NP_757857.1 CDS MYPE4720 NC_004432.1 608888 609787 R paralog family; aldo/keto reductase complement(608888..609787) Mycoplasma penetrans HF-2 1041295 NP_757858.1 CDS MYPE4730 NC_004432.1 610069 610314 D similar to CagA protein of Helicobacter pylori AJ269854, Expect=2.4e-01, Identities=40%; hypothetical protein 610069..610314 Mycoplasma penetrans HF-2 1041296 NP_757859.1 CDS MYPE4740 NC_004432.1 610298 610750 D MYPE 5680paralog; hypothetical protein 610298..610750 Mycoplasma penetrans HF-2 1041298 NP_757860.1 CDS MYPE4750 NC_004432.1 610827 611297 D MYPE 5680paralog; hypothetical protein 610827..611297 Mycoplasma penetrans HF-2 1041300 NP_757861.1 CDS MYPE4760 NC_004432.1 611374 611823 D MYPE 5680paralog; hypothetical protein 611374..611823 Mycoplasma penetrans HF-2 1041302 NP_757862.1 CDS MYPE4765 NC_004432.1 612044 612280 D hypothetical protein 612044..612280 Mycoplasma penetrans HF-2 1041303 NP_757863.1 CDS MYPE4770 NC_004432.1 612492 612950 D hypothetical protein 612492..612950 Mycoplasma penetrans HF-2 1041304 NP_757864.1 CDS MYPE4780 NC_004432.1 613010 614233 D ATP/GTP-binding protein 613010..614233 Mycoplasma penetrans HF-2 1041305 NP_757865.1 CDS MYPE4790 NC_004432.1 614238 615110 D ATP/GTP-binding protein 614238..615110 Mycoplasma penetrans HF-2 1041306 NP_757866.1 CDS MYPE4800 NC_004432.1 615123 616535 D ATP/GTP-binding protein 615123..616535 Mycoplasma penetrans HF-2 1041307 NP_757867.1 CDS MYPE4810 NC_004432.1 616665 617534 R MYPE4720 paralog; oxidoreductase complement(616665..617534) Mycoplasma penetrans HF-2 1041309 NP_757868.1 CDS MYPE4820 NC_004432.1 617656 618138 R hypothetical protein complement(617656..618138) Mycoplasma penetrans HF-2 1041310 NP_757869.1 CDS MYPE4830 NC_004432.1 618467 621421 D similar to 115 kDa protein of Mycoplasma hyorhinis, Expect=3.7e-162, Identities=34%; structural maintenance of chromosomes SMC superfamily proteins 618467..621421 Mycoplasma penetrans HF-2 1041312 NP_757870.1 CDS MYPE4840 NC_004432.1 621447 622511 D signal recognition particle GTPase FtsY 621447..622511 Mycoplasma penetrans HF-2 1041313 NP_757871.1 CDS MYPE4850 NC_004432.1 622513 622836 D hypothetical protein 622513..622836 Mycoplasma penetrans HF-2 1041314 NP_757872.1 CDS MYPE4860 NC_004432.1 622821 623399 D hypothetical protein 622821..623399 Mycoplasma penetrans HF-2 1041315 NP_757873.1 CDS MYPE4870 NC_004432.1 623606 624421 D hypothetical protein 623606..624421 Mycoplasma penetrans HF-2 1041316 NP_757874.1 CDS MYPE4880 NC_004432.1 624803 625819 R IS1630-like transposase complement(624803..625819) Mycoplasma penetrans HF-2 1041317 NP_757875.1 CDS MYPE4890 NC_004432.1 625954 626835 R hypothetical protein complement(625954..626835) Mycoplasma penetrans HF-2 1041318 NP_757876.1 CDS MYPE4900 NC_004432.1 626965 627510 D hypothetical protein 626965..627510 Mycoplasma penetrans HF-2 1041319 NP_757877.1 CDS MYPE4910 NC_004432.1 627628 628464 D hypothetical protein 627628..628464 Mycoplasma penetrans HF-2 1041327 NP_757878.1 CDS MYPE4920 NC_004432.1 628588 628818 D hypothetical protein 628588..628818 Mycoplasma penetrans HF-2 1041328 NP_757879.1 CDS MYPE4930 NC_004432.1 628888 630201 R hypothetical protein complement(628888..630201) Mycoplasma penetrans HF-2 1041329 NP_757880.1 CDS MYPE4940 NC_004432.1 630182 631369 R cytosine-specific DNA methyltransferase complement(630182..631369) Mycoplasma penetrans HF-2 1041330 NP_757881.1 CDS MYPE4950 NC_004432.1 631567 632466 D haloacid dehalogenase 631567..632466 Mycoplasma penetrans HF-2 1041331 NP_757882.1 CDS MYPE4960 NC_004432.1 632713 634854 D anaerobic ribonucleoside-triphosphate reductase 632713..634854 Mycoplasma penetrans HF-2 1041333 NP_757883.1 CDS MYPE4970 NC_004432.1 634856 635365 D anaerobic ribonucleoside-triphosphate reductase activating protein NrdG 634856..635365 Mycoplasma penetrans HF-2 1041334 NP_757884.1 CDS MYPE4980 NC_004432.1 635414 637357 D similar to HMW1 of Mycoplasma pneumoniae, Pfam ELK domain Accession number PF03789; hypothetical protein 635414..637357 Mycoplasma penetrans HF-2 1041335 NP_757885.1 CDS MYPE4990 NC_004432.1 637864 638289 D paralog family; hypothetical protein 637864..638289 Mycoplasma penetrans HF-2 1041336 NP_757886.1 CDS MYPE5000 NC_004432.1 638325 638585 D MYPE 4990 paralog; hypothetical protein 638325..638585 Mycoplasma penetrans HF-2 1041337 NP_757887.1 CDS MYPE5010 NC_004432.1 638675 639730 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(638675..639730) Mycoplasma penetrans HF-2 1041339 NP_757888.1 CDS MYPE5020 NC_004432.1 639717 640616 R tRNA-isopentenyl pyrophosphate transferase complement(639717..640616) Mycoplasma penetrans HF-2 1041340 NP_757889.1 CDS eutD NC_004432.1 640803 641777 R in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase complement(640803..641777) Mycoplasma penetrans HF-2 1041341 NP_757890.1 CDS MYPE5040 NC_004432.1 641788 642438 R hypothetical protein complement(641788..642438) Mycoplasma penetrans HF-2 1041342 NP_757891.1 CDS MYPE5050 NC_004432.1 642888 644369 D BglG family transcription antiterminator 642888..644369 Mycoplasma penetrans HF-2 1041344 NP_757892.1 CDS MYPE5060 NC_004432.1 644594 645859 D hypothetical protein 644594..645859 Mycoplasma penetrans HF-2 1041346 NP_757893.1 CDS MYPE5070 NC_004432.1 645931 646725 R hypothetical protein complement(645931..646725) Mycoplasma penetrans HF-2 1041347 NP_757894.1 CDS MYPE5080 NC_004432.1 646995 648074 D pyruvate dehydrogenase E1 component subunit alpha 646995..648074 Mycoplasma penetrans HF-2 1041349 NP_757895.1 CDS MYPE5090 NC_004432.1 648074 649075 D pyruvate dehydrogenase E1 component subunit beta 648074..649075 Mycoplasma penetrans HF-2 1041351 NP_757896.1 CDS MYPE5100 NC_004432.1 649128 650564 D branched-chain alpha-keto acid dehydrogenase subunit E2 649128..650564 Mycoplasma penetrans HF-2 1041352 NP_757897.1 CDS MYPE5110 NC_004432.1 650595 651986 D dihydrolipoamide dehydrogenase of pyruvate dehydrogenase E3 component 650595..651986 Mycoplasma penetrans HF-2 1041353 NP_757898.1 CDS MYPE5120 NC_004432.1 652172 652666 D gluthatione peroxidase 652172..652666 Mycoplasma penetrans HF-2 1041354 NP_757899.1 CDS MYPE5130 NC_004432.1 653078 654109 R oxidoreductase complement(653078..654109) Mycoplasma penetrans HF-2 1041355 NP_757900.1 CDS MYPE5140 NC_004432.1 654228 654803 R AcrR family transcriptional regulator complement(654228..654803) Mycoplasma penetrans HF-2 1041356 NP_757901.1 CDS MYPE5150 NC_004432.1 654895 655995 D hypothetical protein 654895..655995 Mycoplasma penetrans HF-2 1041358 NP_757902.1 CDS MYPE5160 NC_004432.1 656178 657749 D hypothetical protein 656178..657749 Mycoplasma penetrans HF-2 1041360 NP_757903.1 CDS MYPE5170 NC_004432.1 657867 659516 D amino acid permease 657867..659516 Mycoplasma penetrans HF-2 1041361 NP_757904.1 CDS MYPE5180 NC_004432.1 659570 660043 R hypothetical protein complement(659570..660043) Mycoplasma penetrans HF-2 1041363 NP_757905.1 CDS MYPE5190 NC_004432.1 660052 660870 R haloacid dehalogenase-like hydrolase complement(660052..660870) Mycoplasma penetrans HF-2 1041364 NP_757906.1 CDS nadD NC_004432.1 661025 662074 D catalyzes the reversible adenylation of nicotinate mononucleotide to nicotinic acid adenine dinucleotide; nicotinate-nucleotide adenylyltransferase 661025..662074 Mycoplasma penetrans HF-2 1041365 NP_757907.1 CDS MYPE5210 NC_004432.1 662086 662772 D 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 662086..662772 Mycoplasma penetrans HF-2 1041366 NP_757908.1 CDS MYPE5220 NC_004432.1 662834 664165 R hypothetical protein complement(662834..664165) Mycoplasma penetrans HF-2 1041367 NP_757909.1 CDS MYPE5230 NC_004432.1 664643 665731 D NADP-dependent alcohol dehydrogenase 664643..665731 Mycoplasma penetrans HF-2 1041368 NP_757910.1 CDS MYPE5240 NC_004432.1 665788 666390 R xanthosine triphosphate pyrophosphatase complement(665788..666390) Mycoplasma penetrans HF-2 1041369 NP_757911.1 CDS MYPE5250 NC_004432.1 666500 666865 R hypothetical protein complement(666500..666865) Mycoplasma penetrans HF-2 1041370 NP_757912.1 CDS MYPE5260 NC_004432.1 666988 668361 R MYPE4230 paralog; hypothetical protein complement(666988..668361) Mycoplasma penetrans HF-2 1041371 NP_757913.1 CDS MYPE5270 NC_004432.1 668557 669318 R hypothetical protein complement(668557..669318) Mycoplasma penetrans HF-2 1041372 NP_757914.1 CDS MYPE5280 NC_004432.1 669428 671569 R ppGpp 3'-pyrophosphohydrolase complement(669428..671569) Mycoplasma penetrans HF-2 1041373 NP_757915.1 CDS MYPE5290 NC_004432.1 671800 673689 D hypothetical protein 671800..673689 Mycoplasma penetrans HF-2 1041375 NP_757916.1 CDS MYPE5300 NC_004432.1 673823 674575 D paralog family; hypothetical protein 673823..674575 Mycoplasma penetrans HF-2 1041376 NP_757917.1 CDS MYPE5310 NC_004432.1 674658 675275 R hypothetical protein complement(674658..675275) Mycoplasma penetrans HF-2 1041377 NP_757918.1 CDS MYPE5330 NC_004432.1 675536 676063 D hypothetical protein 675536..676063 Mycoplasma penetrans HF-2 1041379 NP_757919.1 CDS MYPE5340 NC_004432.1 676182 676820 R hypothetical protein complement(676182..676820) Mycoplasma penetrans HF-2 1041380 NP_757920.1 CDS MYPE5350 NC_004432.1 677235 678251 D IS1630-like transposase 677235..678251 Mycoplasma penetrans HF-2 1041381 NP_757921.1 CDS MYPE5360 NC_004432.1 678565 679449 R hypothetical protein complement(678565..679449) Mycoplasma penetrans HF-2 1041383 NP_757922.1 CDS MYPE5370 NC_004432.1 679713 680015 R hypothetical protein complement(679713..680015) Mycoplasma penetrans HF-2 1041384 NP_757923.1 CDS MYPE5380 NC_004432.1 680107 680400 D hypothetical protein 680107..680400 Mycoplasma penetrans HF-2 1041385 NP_757924.1 CDS MYPE5390 NC_004432.1 680663 681373 D hypothetical protein 680663..681373 Mycoplasma penetrans HF-2 1041387 NP_757925.1 CDS MYPE5400 NC_004432.1 681538 682554 R IS1630-like transposase complement(681538..682554) Mycoplasma penetrans HF-2 1041388 NP_757926.1 CDS MYPE5410 NC_004432.1 683254 684810 R IS1202-like transposase complement(683254..684810) Mycoplasma penetrans HF-2 1041389 NP_757927.1 CDS MYPE5420 NC_004432.1 685162 685602 D hypothetical protein 685162..685602 Mycoplasma penetrans HF-2 1041390 NP_757928.1 CDS MYPE5430 NC_004432.1 685866 686537 D MYPE5300 paralog; hypothetical protein 685866..686537 Mycoplasma penetrans HF-2 1041391 NP_757929.1 CDS MYPE5440 NC_004432.1 686657 688066 R hypothetical protein complement(686657..688066) Mycoplasma penetrans HF-2 1041392 NP_757930.1 CDS MYPE5445 NC_004432.1 688322 688519 R hypothetical protein complement(688322..688519) Mycoplasma penetrans HF-2 1041393 NP_757931.1 CDS MYPE5450 NC_004432.1 688883 690622 R ptsI; PTS system enzyme I complement(688883..690622) Mycoplasma penetrans HF-2 1041394 NP_757932.1 CDS MYPE5460 NC_004432.1 690654 691598 R lipase/esterase complement(690654..691598) Mycoplasma penetrans HF-2 1041396 NP_757933.1 CDS MYPE5470 NC_004432.1 691782 695999 R translocase complement(691782..695999) Mycoplasma penetrans HF-2 1041397 NP_757934.1 CDS MYPE5490 NC_004432.1 696629 697702 D transposase for IS232-like insertion sequence element 696629..697702 Mycoplasma penetrans HF-2 1041398 NP_757935.1 CDS MYPE5500 NC_004432.1 697704 698465 D IS232 ATP-binding protein IstB 697704..698465 Mycoplasma penetrans HF-2 1041399 NP_757936.1 CDS MYPE5505 NC_004432.1 698899 699132 D hypothetical protein 698899..699132 Mycoplasma penetrans HF-2 1041401 NP_757937.1 CDS MYPE5510 NC_004432.1 699666 700190 R hypothetical protein complement(699666..700190) Mycoplasma penetrans HF-2 1041402 NP_757938.1 CDS MYPE5520 NC_004432.1 700280 702856 R oligopeptide transport ATP-binding protein OppF complement(700280..702856) Mycoplasma penetrans HF-2 1041405 NP_757939.1 CDS MYPE5530 NC_004432.1 702868 704088 R oligopeptide transport ATP-binding protein OppD complement(702868..704088) Mycoplasma penetrans HF-2 1041409 NP_757940.1 CDS MYPE5540 NC_004432.1 704091 705323 R oligopeptide transport system permease protein OppC complement(704091..705323) Mycoplasma penetrans HF-2 1041410 NP_757941.1 CDS MYPE5550 NC_004432.1 705316 706596 R oligopeptide transport system permease protein OppB complement(705316..706596) Mycoplasma penetrans HF-2 1041413 NP_757942.1 CDS MYPE5560 NC_004432.1 706606 709149 R hypothetical protein complement(706606..709149) Mycoplasma penetrans HF-2 1041419 NP_757943.1 CDS MYPE5570 NC_004432.1 709425 710750 R MYPE3080 paralog; glutamine transport ATP-binding protein complement(709425..710750) Mycoplasma penetrans HF-2 1041420 NP_757944.1 CDS MYPE5580 NC_004432.1 710797 713286 R hypothetical protein complement(710797..713286) Mycoplasma penetrans HF-2 1041422 NP_757945.1 CDS MYPE5590 NC_004432.1 713279 714826 R hypothetical protein complement(713279..714826) Mycoplasma penetrans HF-2 1041424 NP_757946.1 CDS MYPE5600 NC_004432.1 714798 715439 R methylase complement(714798..715439) Mycoplasma penetrans HF-2 1041426 NP_757947.1 CDS MYPE5610 NC_004432.1 716095 716577 D this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 716095..716577 Mycoplasma penetrans HF-2 1041427 NP_757948.1 CDS MYPE5620 NC_004432.1 716685 717482 R protein phosphatase complement(716685..717482) Mycoplasma penetrans HF-2 1041429 NP_757949.1 CDS MYPE5630 NC_004432.1 717469 718527 R ortholog of YloN of Bacillus subtilis; hypothetical protein complement(717469..718527) Mycoplasma penetrans HF-2 1041430 NP_757950.1 CDS MYPE5640 NC_004432.1 718527 719117 R guanylate kinase complement(718527..719117) Mycoplasma penetrans HF-2 1041431 NP_757951.1 CDS def NC_004432.1 719197 719757 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 719197..719757 Mycoplasma penetrans HF-2 1041435 NP_757952.1 CDS MYPE5660 NC_004432.1 719924 720940 D IS1630-like transposase 719924..720940 Mycoplasma penetrans HF-2 1041436 NP_757953.1 CDS MYPE5670 NC_004432.1 721079 721435 R MYPE5680 paralog; hypothetical protein complement(721079..721435) Mycoplasma penetrans HF-2 1041437 NP_757954.1 CDS MYPE5680 NC_004432.1 721637 722152 R paralog family; hypothetical protein complement(721637..722152) Mycoplasma penetrans HF-2 1041438 NP_757955.1 CDS MYPE5690 NC_004432.1 722136 722378 R hypothetical protein complement(722136..722378) Mycoplasma penetrans HF-2 1041439 NP_757956.1 CDS MYPE5700 NC_004432.1 722714 723904 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(722714..723904) Mycoplasma penetrans HF-2 1041442 NP_757957.1 CDS MYPE5710 NC_004432.1 724015 725703 D IS1202-like transposase 724015..725703 Mycoplasma penetrans HF-2 1041443 NP_757958.1 CDS MYPE5720 NC_004432.1 725889 727304 D IS1202-like transposase 725889..727304 Mycoplasma penetrans HF-2 1041444 NP_757959.1 CDS MYPE5730 NC_004432.1 727527 727892 R ribosomal protein L7/L12 complement(727527..727892) Mycoplasma penetrans HF-2 1041445 NP_757960.1 CDS rplJ NC_004432.1 727920 728477 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(727920..728477) Mycoplasma penetrans HF-2 1041447 NP_757961.1 CDS MYPE5750 NC_004432.1 728692 729429 R glycerophosphoryl diester phosphodiesterase complement(728692..729429) Mycoplasma penetrans HF-2 1041448 NP_757962.1 CDS MYPE5760 NC_004432.1 729422 730906 R permease complement(729422..730906) Mycoplasma penetrans HF-2 1041449 NP_757963.1 CDS MYPE5770 NC_004432.1 730911 731363 R hypothetical protein complement(730911..731363) Mycoplasma penetrans HF-2 1041450 NP_757964.1 CDS MYPE5780 NC_004432.1 731733 732728 R hypothetical protein complement(731733..732728) Mycoplasma penetrans HF-2 1041451 NP_757965.1 CDS MYPE5790 NC_004432.1 732760 733620 R hypothetical protein complement(732760..733620) Mycoplasma penetrans HF-2 1041452 NP_757966.1 CDS MYPE5800 NC_004432.1 733653 734657 R ATPase AAA complement(733653..734657) Mycoplasma penetrans HF-2 1041453 NP_757967.1 CDS MYPE5810 NC_004432.1 734799 735350 R hypoxanthine-guanine phosphoribosyltransferase complement(734799..735350) Mycoplasma penetrans HF-2 1041454 NP_757968.1 CDS MYPE5820 NC_004432.1 735350 736648 R adenylosuccinate lyase complement(735350..736648) Mycoplasma penetrans HF-2 1041455 NP_757969.1 CDS MYPE5830 NC_004432.1 736658 737977 R adenylosuccinate synthetase complement(736658..737977) Mycoplasma penetrans HF-2 1041456 NP_757970.1 CDS MYPE5840 NC_004432.1 738045 738212 R hypothetical protein complement(738045..738212) Mycoplasma penetrans HF-2 1041457 NP_757971.1 CDS MYPE5850 NC_004432.1 738267 739238 R phosphoesterase complement(738267..739238) Mycoplasma penetrans HF-2 1041459 NP_757972.1 CDS MYPE5860 NC_004432.1 739245 740396 R thiamin biosynthesis protein complement(739245..740396) Mycoplasma penetrans HF-2 1041460 NP_757973.1 CDS MYPE5870 NC_004432.1 740575 741504 R sugar ABC transporter permease complement(740575..741504) Mycoplasma penetrans HF-2 1041463 NP_757974.1 CDS MYPE5880 NC_004432.1 741504 743138 R sugar ABC transporter permease complement(741504..743138) Mycoplasma penetrans HF-2 1041464 NP_757975.1 CDS MYPE5890 NC_004432.1 743138 745036 R sugar ABC transporter ATP-binding protein complement(743138..745036) Mycoplasma penetrans HF-2 1041465 NP_757976.1 CDS MYPE5900 NC_004432.1 745002 746816 R lipoprotein complement(745002..746816) Mycoplasma penetrans HF-2 1041466 NP_757977.1 CDS MYPE5910 NC_004432.1 747077 749386 R PTS system enzyme IIABC component complement(747077..749386) Mycoplasma penetrans HF-2 1041467 NP_757978.1 CDS pfkA NC_004432.1 750031 750999 R catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase complement(750031..750999) Mycoplasma penetrans HF-2 1041468 NP_757979.1 CDS MYPE5930 NC_004432.1 751077 751673 R hypothetical protein complement(751077..751673) Mycoplasma penetrans HF-2 1041470 NP_757980.1 CDS MYPE5940 NC_004432.1 751683 752252 R MerR family transcriptional regulator complement(751683..752252) Mycoplasma penetrans HF-2 1041473 NP_757981.1 CDS MYPE5950 NC_004432.1 752638 754365 D MYPE5960 paralog; hypothetical protein 752638..754365 Mycoplasma penetrans HF-2 1041475 NP_757982.1 CDS MYPE5960 NC_004432.1 754566 756707 D paralog family; hypothetical protein 754566..756707 Mycoplasma penetrans HF-2 1041476 NP_757983.1 CDS MYPE5970 NC_004432.1 756800 757396 D hypothetical protein 756800..757396 Mycoplasma penetrans HF-2 1041477 NP_757984.1 CDS MYPE5980 NC_004432.1 757404 758852 D MYPE5960 paralog; hypothetical protein 757404..758852 Mycoplasma penetrans HF-2 1041478 NP_757985.1 CDS MYPE5990 NC_004432.1 758954 761509 R lipase complement(758954..761509) Mycoplasma penetrans HF-2 1041479 NP_757986.1 CDS MYPE6000 NC_004432.1 761573 761800 R hypothetical protein complement(761573..761800) Mycoplasma penetrans HF-2 1041480 NP_757987.1 CDS MYPE6010 NC_004432.1 761815 763527 R lipase complement(761815..763527) Mycoplasma penetrans HF-2 1041481 NP_757988.1 CDS MYPE6020 NC_004432.1 763511 765403 R hypothetical protein complement(763511..765403) Mycoplasma penetrans HF-2 1041482 NP_757989.1 CDS MYPE6030 NC_004432.1 765413 768070 R lipase complement(765413..768070) Mycoplasma penetrans HF-2 1041483 NP_757990.1 CDS MYPE6040 NC_004432.1 768384 768605 R hypothetical protein complement(768384..768605) Mycoplasma penetrans HF-2 1041484 NP_757991.1 CDS MYPE6050 NC_004432.1 768615 770519 R hypothetical protein complement(768615..770519) Mycoplasma penetrans HF-2 1041485 NP_757992.1 CDS MYPE6060 NC_004432.1 770657 773518 R paralog family, low similarity to 116 kDa surface antigen of Mycoplasma genitalium Expect=1.4e-09, Identities=22%; hypothetical protein complement(770657..773518) Mycoplasma penetrans HF-2 1041486 NP_757993.1 CDS MYPE6070 NC_004432.1 773667 776519 R MYPE6060 paralog; hypothetical protein complement(773667..776519) Mycoplasma penetrans HF-2 1041487 NP_757994.1 CDS MYPE6080 NC_004432.1 776690 778048 D arginine deiminase 776690..778048 Mycoplasma penetrans HF-2 1041488 NP_757995.1 CDS MYPE6090 NC_004432.1 778069 779097 D catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase 778069..779097 Mycoplasma penetrans HF-2 1041489 NP_757996.1 CDS MYPE6100 NC_004432.1 779123 780052 D catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 779123..780052 Mycoplasma penetrans HF-2 1041491 NP_757997.1 CDS MYPE6110 NC_004432.1 780077 781780 D amino acid permease 780077..781780 Mycoplasma penetrans HF-2 1041492 NP_757998.1 CDS argS NC_004432.1 781997 783691 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 781997..783691 Mycoplasma penetrans HF-2 1041494 NP_757999.1 CDS MYPE6130 NC_004432.1 784352 789808 R MYPE890 paralog; permease complement(784352..789808) Mycoplasma penetrans HF-2 1041495 NP_758000.1 CDS MYPE6140 NC_004432.1 790072 790389 R hypothetical protein complement(790072..790389) Mycoplasma penetrans HF-2 1041496 NP_758001.1 CDS MYPE6155 NC_004432.1 790534 790731 R hypothetical protein complement(790534..790731) Mycoplasma penetrans HF-2 1041497 NP_758002.1 CDS MYPE6160 NC_004432.1 790872 791042 R hypothetical protein complement(790872..791042) Mycoplasma penetrans HF-2 1041498 NP_758003.1 CDS MYPE6175 NC_004432.1 791731 791955 R hypothetical protein complement(791731..791955) Mycoplasma penetrans HF-2 1041499 NP_758004.1 CDS MYPE6180 NC_004432.1 792364 792909 D hypothetical protein 792364..792909 Mycoplasma penetrans HF-2 1041500 NP_758005.1 CDS MYPE6190 NC_004432.1 793022 793309 D hypothetical protein 793022..793309 Mycoplasma penetrans HF-2 1041501 NP_758006.1 CDS MYPE6200 NC_004432.1 793695 794237 D MYPE6410 paralog; hypothetical protein 793695..794237 Mycoplasma penetrans HF-2 1041502 NP_758007.1 CDS MYPE6210 NC_004432.1 794425 795603 R NADH-dependent butanol dehydrogenase complement(794425..795603) Mycoplasma penetrans HF-2 1041503 NP_758008.1 CDS MYPE6220 NC_004432.1 795885 796046 D hypothetical protein 795885..796046 Mycoplasma penetrans HF-2 1041504 NP_758009.1 CDS MYPE6230 NC_004432.1 796194 797627 D hypothetical protein 796194..797627 Mycoplasma penetrans HF-2 1041505 NP_758010.1 CDS MYPE6240 NC_004432.1 798211 798891 D alpha-acetolactate decarboxylase 798211..798891 Mycoplasma penetrans HF-2 1041507 NP_758011.1 CDS MYPE6250 NC_004432.1 799425 799679 D 3-ketoacyl-ACP reductase 799425..799679 Mycoplasma penetrans HF-2 1041512 NP_758012.1 CDS MYPE6260 NC_004432.1 800167 801246 R formate/ nitrite transporter complement(800167..801246) Mycoplasma penetrans HF-2 1041517 NP_758013.1 CDS MYPE6270 NC_004432.1 801422 802168 D hypothetical protein 801422..802168 Mycoplasma penetrans HF-2 1041518 NP_758014.1 CDS MYPE6275 NC_004432.1 802271 802441 R hypothetical protein complement(802271..802441) Mycoplasma penetrans HF-2 1041535 NP_758015.1 CDS MYPE6280 NC_004432.1 802979 803803 D hypothetical protein 802979..803803 Mycoplasma penetrans HF-2 1041536 NP_758016.1 CDS MYPE6290 NC_004432.1 804088 805500 D transposase for IS232-like insertion sequence element 804088..805500 Mycoplasma penetrans HF-2 1041549 NP_758017.1 CDS MYPE6300 NC_004432.1 805502 806263 D IS232 ATP-binding protein IstB 805502..806263 Mycoplasma penetrans HF-2 1041557 NP_758018.1 CDS MYPE6310 NC_004432.1 806513 807235 D hypothetical protein 806513..807235 Mycoplasma penetrans HF-2 1041558 NP_758019.1 CDS MYPE6320 NC_004432.1 807241 809568 R hypothetical protein complement(807241..809568) Mycoplasma penetrans HF-2 1041559 NP_758020.1 CDS MYPE6330 NC_004432.1 809552 811384 R hypothetical protein complement(809552..811384) Mycoplasma penetrans HF-2 1041560 NP_758021.1 CDS MYPE6340 NC_004432.1 811418 813085 R glycosyl transferase complement(811418..813085) Mycoplasma penetrans HF-2 1041561 NP_758022.1 CDS glpK NC_004432.1 813209 814732 R Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase complement(813209..814732) Mycoplasma penetrans HF-2 1041562 NP_758023.1 CDS MYPE6370 NC_004432.1 814757 815902 R glycerol-3-phosphate dehydrogenase complement(814757..815902) Mycoplasma penetrans HF-2 1041564 NP_758024.1 CDS MYPE6380 NC_004432.1 815954 816772 R glycerol uptake facilitator protein complement(815954..816772) Mycoplasma penetrans HF-2 1041568 NP_758025.1 CDS recA NC_004432.1 817045 818034 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(817045..818034) Mycoplasma penetrans HF-2 1041570 NP_758026.1 CDS MYPE6400 NC_004432.1 818098 818595 R competence-damage inducible protein CinA complement(818098..818595) Mycoplasma penetrans HF-2 1040515 NP_758027.1 CDS MYPE6410 NC_004432.1 819003 819542 R hypothetical protein complement(819003..819542) Mycoplasma penetrans HF-2 1041041 NP_758028.1 CDS MYPE6420 NC_004432.1 819915 820442 D NADPH oxidoreductase 819915..820442 Mycoplasma penetrans HF-2 1040909 NP_758029.1 CDS MYPE6430 NC_004432.1 820624 821352 D NADPH flavin oxidoreductase 820624..821352 Mycoplasma penetrans HF-2 1040578 NP_758030.1 CDS MYPE6440 NC_004432.1 821354 822439 R ATP/GTP-binding protein complement(821354..822439) Mycoplasma penetrans HF-2 1040624 NP_758031.1 CDS MYPE6450 NC_004432.1 822420 823019 R hypothetical protein complement(822420..823019) Mycoplasma penetrans HF-2 1041047 NP_758032.1 CDS MYPE6460 NC_004432.1 823023 823964 R hypothetical protein complement(823023..823964) Mycoplasma penetrans HF-2 1041049 NP_758033.1 CDS MYPE6470 NC_004432.1 823988 828433 R DNA topoisomerase IV subunit A complement(823988..828433) Mycoplasma penetrans HF-2 1040591 NP_758034.1 CDS MYPE6480 NC_004432.1 828439 830334 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(828439..830334) Mycoplasma penetrans HF-2 1041035 NP_758035.1 CDS MYPE6490 NC_004432.1 831015 832199 R P35 lipoprotein complement(831015..832199) Mycoplasma penetrans HF-2 1040566 NP_758036.1 CDS MYPE6495 NC_004432.1 832494 832703 R MYPE6495 and MYPE6500 are predicted as the same gene with a frameshift; P35 lipoprotein complement(832494..832703) Mycoplasma penetrans HF-2 1041043 NP_758037.1 CDS MYPE6500 NC_004432.1 832669 833658 R MYPE6495 and MYPE6500 are predicted as the same gene with a frameshift; P35 lipoprotein complement(832669..833658) Mycoplasma penetrans HF-2 1041037 NP_758038.1 CDS MYPE6510 NC_004432.1 833955 835139 R P35 lipoprotein complement(833955..835139) Mycoplasma penetrans HF-2 1041034 NP_758039.1 CDS MYPE6525 NC_004432.1 835456 835935 R MYPE6520 and MYPE6525 are predicted as the same gene with a frameshift; P35 lipoprotein complement(835456..835935) Mycoplasma penetrans HF-2 1041050 NP_758040.1 CDS MYPE6520 NC_004432.1 836106 836645 R MYPE6520 and MYPE6525 are predicted as the same gene with a frameshift; P35 lipoprotein complement(836106..836645) Mycoplasma penetrans HF-2 1040573 NP_758041.1 CDS MYPE6530 NC_004432.1 836957 838117 R P35 lipoprotein complement(836957..838117) Mycoplasma penetrans HF-2 1040571 NP_758042.1 CDS MYPE6540 NC_004432.1 838407 839543 R P35 lipoprotein complement(838407..839543) Mycoplasma penetrans HF-2 1041571 NP_758043.1 CDS MYPE6550 NC_004432.1 839924 840985 R P35 lipoprotein complement(839924..840985) Mycoplasma penetrans HF-2 1040592 NP_758044.1 CDS MYPE6560 NC_004432.1 841270 842445 R P35 lipoprotein complement(841270..842445) Mycoplasma penetrans HF-2 1040572 NP_758045.1 CDS MYPE6570 NC_004432.1 842735 843859 R P35 lipoprotein complement(842735..843859) Mycoplasma penetrans HF-2 1040546 NP_758046.1 CDS MYPE6580 NC_004432.1 844164 845363 R P35 lipoprotein complement(844164..845363) Mycoplasma penetrans HF-2 1040569 NP_758047.1 CDS MYPE6590 NC_004432.1 845665 846762 R P35 lipoprotein complement(845665..846762) Mycoplasma penetrans HF-2 1041048 NP_758048.1 CDS MYPE6600 NC_004432.1 847002 848744 R similar to P69 of Mycoplasma hyorhinis Expect=3.3e-80, Identities=33%; transport system permease complement(847002..848744) Mycoplasma penetrans HF-2 1040576 NP_758049.1 CDS MYPE6610 NC_004432.1 848734 849471 R MYPE3080 paralog; ABC transporter ATP-binding protein complement(848734..849471) Mycoplasma penetrans HF-2 1041044 NP_758050.1 CDS MYPE6620 NC_004432.1 849464 850672 R similar to P37 of Mycoplasma hyorhinis Expect=4.3e-54, Identities=35%; high affinity transport system protein complement(849464..850672) Mycoplasma penetrans HF-2 1040622 NP_758051.1 CDS MYPE6630 NC_004432.1 850970 852142 R P35 lipoprotein homolog reported as lipoprotein IMP13 complement(850970..852142) Mycoplasma penetrans HF-2 1041054 NP_758052.1 CDS MYPE6640 NC_004432.1 852586 853752 R P35 lipoprotein complement(852586..853752) Mycoplasma penetrans HF-2 1041046 NP_758053.1 CDS MYPE6650 NC_004432.1 854049 855209 R P35 lipoprotein complement(854049..855209) Mycoplasma penetrans HF-2 1040550 NP_758054.1 CDS MYPE6660 NC_004432.1 855889 857058 R P35 lipoprotein complement(855889..857058) Mycoplasma penetrans HF-2 1041051 NP_758055.1 CDS MYPE6670 NC_004432.1 857352 858488 R P35 lipoprotein complement(857352..858488) Mycoplasma penetrans HF-2 1041039 NP_758056.1 CDS MYPE6680 NC_004432.1 858786 859937 R P35 lipoprotein complement(858786..859937) Mycoplasma penetrans HF-2 1041055 NP_758057.1 CDS MYPE6690 NC_004432.1 860232 861398 R P35 lipoprotein complement(860232..861398) Mycoplasma penetrans HF-2 1040548 NP_758058.1 CDS MYPE6700 NC_004432.1 861753 862316 R hypothetical protein complement(861753..862316) Mycoplasma penetrans HF-2 1040575 NP_758059.1 CDS MYPE6710 NC_004432.1 862483 863619 R P35 lipoprotein complement(862483..863619) Mycoplasma penetrans HF-2 1040621 NP_758060.1 CDS MYPE6720 NC_004432.1 863908 865074 R P35 lipoprotein complement(863908..865074) Mycoplasma penetrans HF-2 1041042 NP_758061.1 CDS MYPE6730 NC_004432.1 865362 866516 R P35 lipoprotein complement(865362..866516) Mycoplasma penetrans HF-2 1041052 NP_758062.1 CDS MYPE6740 NC_004432.1 866864 867925 R P35 lipoprotein complement(866864..867925) Mycoplasma penetrans HF-2 1040563 NP_758063.1 CDS MYPE6750 NC_004432.1 868230 869384 R P35 lipoprotein complement(868230..869384) Mycoplasma penetrans HF-2 1040537 NP_758064.1 CDS MYPE6760 NC_004432.1 869979 870434 R hypothetical protein complement(869979..870434) Mycoplasma penetrans HF-2 1040564 NP_758065.1 CDS MYPE6770 NC_004432.1 870598 871077 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(870598..871077) Mycoplasma penetrans HF-2 1041080 NP_758066.1 CDS MYPE6780 NC_004432.1 871412 872563 R P35 lipoprotein homolog reported as gene for P38 lipoprotein complement(871412..872563) Mycoplasma penetrans HF-2 1040549 NP_758067.1 CDS MYPE6790 NC_004432.1 872868 874187 R P35 lipoprotein complement(872868..874187) Mycoplasma penetrans HF-2 1040580 NP_758068.1 CDS MYPE6800 NC_004432.1 874612 875742 R P35 lipoprotein homolog reported as gene for P33 lipoprotein complement(874612..875742) Mycoplasma penetrans HF-2 1041071 NP_758069.1 CDS MYPE6810 NC_004432.1 876041 877129 R P35 lipoprotein complement(876041..877129) Mycoplasma penetrans HF-2 1040619 NP_758070.1 CDS MYPE6820 NC_004432.1 877416 878543 R P35 lipoprotein homolog reported as IMP14 complement(877416..878543) Mycoplasma penetrans HF-2 1041068 NP_758071.1 CDS MYPE6830 NC_004432.1 878839 879924 R P35 lipoprotein complement(878839..879924) Mycoplasma penetrans HF-2 1040553 NP_758072.1 CDS MYPE6840 NC_004432.1 880225 881313 R P35 lipoprotein complement(880225..881313) Mycoplasma penetrans HF-2 1040554 NP_758073.1 CDS MYPE6850 NC_004432.1 881676 882512 R paralog family; lipoprotein complement(881676..882512) Mycoplasma penetrans HF-2 1040620 NP_758074.1 CDS MYPE6860 NC_004432.1 882695 883159 R dihyrofolate reductase complement(882695..883159) Mycoplasma penetrans HF-2 1041053 NP_758075.1 CDS thyA NC_004432.1 883159 884028 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(883159..884028) Mycoplasma penetrans HF-2 1040542 NP_758076.1 CDS MYPE6880 NC_004432.1 884015 884863 R methylenetetrahydrofolate dehydrogenase complement(884015..884863) Mycoplasma penetrans HF-2 1040574 NP_758077.1 CDS MYPE6890 NC_004432.1 885038 886675 R pyruvate decarboxylase complement(885038..886675) Mycoplasma penetrans HF-2 1040545 NP_758078.1 CDS MYPE6900 NC_004432.1 886677 887837 R butanol dehydrogenas complement(886677..887837) Mycoplasma penetrans HF-2 1040557 NP_758079.1 CDS MYPE6910 NC_004432.1 888037 890382 R ATP-dependent protease La complement(888037..890382) Mycoplasma penetrans HF-2 1041056 NP_758080.1 CDS MYPE6920 NC_004432.1 890549 891886 R FKBP-type peptidylprolyl isomerase complement(890549..891886) Mycoplasma penetrans HF-2 1040540 NP_758081.1 CDS MYPE6930 NC_004432.1 892031 893620 R amino acid permease complement(892031..893620) Mycoplasma penetrans HF-2 1040555 NP_758082.1 CDS MYPE6940 NC_004432.1 893795 895126 R integrated membrane protein complement(893795..895126) Mycoplasma penetrans HF-2 1041582 NP_758083.1 CDS MYPE6950 NC_004432.1 895222 899115 R MYPE6970 paralog, similar to liporotein of Mycoplasma genitalium U39711; hypothetical protein complement(895222..899115) Mycoplasma penetrans HF-2 1040556 NP_758084.1 CDS MYPE6960 NC_004432.1 899148 902945 R MYPE6970 paralog, similar to liporotein of Mycoplasma genitalium U39711; hypothetical protein complement(899148..902945) Mycoplasma penetrans HF-2 1041581 NP_758085.1 CDS MYPE6970 NC_004432.1 902967 906821 R paralog family, similar to liporotein of Mycoplasma genitalium U39711; hypothetical protein complement(902967..906821) Mycoplasma penetrans HF-2 1040539 NP_758086.1 CDS MYPE6980 NC_004432.1 906983 910906 R MYPE6970 paralog, similar to liporotein of Mycoplasma genitalium U39711; hypothetical protein complement(906983..910906) Mycoplasma penetrans HF-2 1040543 NP_758087.1 CDS MYPE6990 NC_004432.1 910938 914219 R MYPE6970 paralog, similar to liporotein of Mycoplasma genitalium U39711; hypothetical protein complement(910938..914219) Mycoplasma penetrans HF-2 1040712 NP_758088.1 CDS MYPE7000 NC_004432.1 914220 914684 R MYPE6970 paralog truncated; hypothetical protein complement(914220..914684) Mycoplasma penetrans HF-2 1040618 NP_758089.1 CDS MYPE7010 NC_004432.1 914706 918569 R MYPE6970 paralog, similar to liporotein of Mycoplasma genitalium U39711; hypothetical protein complement(914706..918569) Mycoplasma penetrans HF-2 1041032 NP_758090.1 CDS MYPE7020 NC_004432.1 918826 920919 R signal-peptide-less P35 lipoprotein complement(918826..920919) Mycoplasma penetrans HF-2 1040562 NP_758091.1 CDS MYPE7035 NC_004432.1 921310 922656 R MYPE7030 and MYPE7035 are predicted as the same gene with a frameshift; signal-peptide-less P35 lipoprotein complement(921310..922656) Mycoplasma penetrans HF-2 1041070 NP_758092.1 CDS MYPE7030 NC_004432.1 922739 923353 R MYPE7030 and MYPE7035 are predicted as the same gene with a frameshift; signal-peptide-less P35 lipoprotein complement(922739..923353) Mycoplasma penetrans HF-2 1040526 NP_758093.1 CDS MYPE7040 NC_004432.1 923612 925753 R signal-peptide-less P35 lipoprotein complement(923612..925753) Mycoplasma penetrans HF-2 1041127 NP_758094.1 CDS MYPE7050 NC_004432.1 925987 928065 R signal-peptide-less P35 lipoprotein complement(925987..928065) Mycoplasma penetrans HF-2 1040530 NP_758095.1 CDS MYPE7060 NC_004432.1 928473 929957 R signal-peptide-less P35 lipoprotein complement(928473..929957) Mycoplasma penetrans HF-2 1040541 NP_758096.1 CDS MYPE7070 NC_004432.1 930370 932427 R signal-peptide-less P35 lipoprotein complement(930370..932427) Mycoplasma penetrans HF-2 1040633 NP_758097.1 CDS MYPE7080 NC_004432.1 932816 933148 R MYPE7110 paralog; lipoprotein complement(932816..933148) Mycoplasma penetrans HF-2 1041031 NP_758098.1 CDS MYPE7090 NC_004432.1 933274 933642 R MYPE7110 paralog; lipoprotein complement(933274..933642) Mycoplasma penetrans HF-2 1040538 NP_758099.1 CDS MYPE7100 NC_004432.1 934292 934558 R transposase for IS150-like insertion sequence element complement(934292..934558) Mycoplasma penetrans HF-2 1040597 NP_758100.1 CDS MYPE7115 NC_004432.1 935044 935220 R hypothetical protein complement(935044..935220) Mycoplasma penetrans HF-2 1041072 NP_758101.1 CDS MYPE7110 NC_004432.1 935471 936325 R MYPE6850 paralog; hypothetical protein complement(935471..936325) Mycoplasma penetrans HF-2 1041002 NP_758102.1 CDS MYPE7120 NC_004432.1 936508 937920 D transposase for IS232-like insertion sequence element 936508..937920 Mycoplasma penetrans HF-2 1040527 NP_758103.1 CDS MYPE7130 NC_004432.1 937922 938683 D insertion sequence IS232 ATP-binding protein 937922..938683 Mycoplasma penetrans HF-2 1041057 NP_758104.1 CDS MYPE7140 NC_004432.1 939317 940048 R MYPE6850 paralog; hypothetical protein complement(939317..940048) Mycoplasma penetrans HF-2 1040525 NP_758105.1 CDS MYPE7150 NC_004432.1 940451 940927 R hypothetical protein complement(940451..940927) Mycoplasma penetrans HF-2 1040536 NP_758106.1 CDS araD NC_004432.1 940930 941661 R catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase complement(940930..941661) Mycoplasma penetrans HF-2 1040567 NP_758107.2 CDS MYPE7170 NC_004432.1 941642 942532 R UlaE; catalyzes the epimerization of L-ribulose-5-phosphate into L-xylulose-5-phosphate; part of the anaerobic L-ascorbate degradation pathway; L-xylulose 5-phosphate 3-epimerase complement(941642..942532) Mycoplasma penetrans HF-2 1040717 NP_758108.1 CDS ulaD NC_004432.1 942507 943160 R catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase complement(942507..943160) Mycoplasma penetrans HF-2 1040617 NP_758109.1 CDS MYPE7190 NC_004432.1 943178 943546 R PTS system enzyme IIA component complement(943178..943546) Mycoplasma penetrans HF-2 1040517 NP_758110.1 CDS MYPE7200 NC_004432.1 943651 943932 R PTS system enzyme IIB component complement(943651..943932) Mycoplasma penetrans HF-2 1041008 NP_758111.1 CDS MYPE7210 NC_004432.1 943971 944192 R similar to transport protein SgaT; hypothetical protein complement(943971..944192) Mycoplasma penetrans HF-2 1040524 NP_758112.1 CDS ulaA NC_004432.1 944315 945868 R membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC complement(944315..945868) Mycoplasma penetrans HF-2 1040552 NP_758113.1 CDS MYPE7230 NC_004432.1 945903 946079 R hypothetical protein complement(945903..946079) Mycoplasma penetrans HF-2 1041126 NP_758114.1 CDS MYPE7240 NC_004432.1 946265 946957 R phosphotriesterase family protein complement(946265..946957) Mycoplasma penetrans HF-2 1040516 NP_758115.1 CDS MYPE7250 NC_004432.1 947297 949975 R hypothetical protein complement(947297..949975) Mycoplasma penetrans HF-2 1041038 NP_758116.1 CDS MYPE7260 NC_004432.1 949978 953469 R hypothetical protein complement(949978..953469) Mycoplasma penetrans HF-2 1040518 NP_758117.1 CDS MYPE7270 NC_004432.1 953497 955299 R hypothetical protein complement(953497..955299) Mycoplasma penetrans HF-2 1041148 NP_758118.1 CDS MYPE7280 NC_004432.1 955305 956261 R MYPE960 paralog; ABC transporter ATP-binding protein complement(955305..956261) Mycoplasma penetrans HF-2 1040522 NP_758119.1 CDS MYPE7290 NC_004432.1 956939 957454 R hypothetical protein complement(956939..957454) Mycoplasma penetrans HF-2 1040521 NP_758120.1 CDS MYPE7300 NC_004432.1 957596 960976 R MYPE2560 paralog; hypothetical protein complement(957596..960976) Mycoplasma penetrans HF-2 1040628 NP_758121.1 CDS MYPE7310 NC_004432.1 961313 962641 D similar to OrfE1 of Mycoplasma fermentans AF179376 Expect=4.6e-52, Identities=33%; hypothetical protein 961313..962641 Mycoplasma penetrans HF-2 1040715 NP_758122.1 CDS MYPE7320 NC_004432.1 962780 966100 R MYPE2560 paralog; hypothetical protein complement(962780..966100) Mycoplasma penetrans HF-2 1040519 NP_758123.1 CDS MYPE7330 NC_004432.1 966342 967895 R P35 lipoprotein complement(966342..967895) Mycoplasma penetrans HF-2 1040531 NP_758124.1 CDS MYPE7340 NC_004432.1 968615 968824 R hypothetical protein complement(968615..968824) Mycoplasma penetrans HF-2 1041060 NP_758125.1 CDS MYPE7350 NC_004432.1 968984 969325 R MYPE8480 paralog; hypothetical protein complement(968984..969325) Mycoplasma penetrans HF-2 1040761 NP_758126.1 CDS MYPE7360 NC_004432.1 969560 970021 R MYPE8480 paralog; hypothetical protein complement(969560..970021) Mycoplasma penetrans HF-2 1040534 NP_758127.1 CDS MYPE7370 NC_004432.1 970527 971624 R P35 lipoprotein complement(970527..971624) Mycoplasma penetrans HF-2 1041565 NP_758128.1 CDS MYPE7375 NC_004432.1 971999 973144 R MYPE7375 and MYPE7380 are predicted as the same gene with a frameshift; P35 lipoprotein complement(971999..973144) Mycoplasma penetrans HF-2 1040520 NP_758129.1 CDS MYPE7380 NC_004432.1 973092 973526 R MYPE7375 and MYPE7380 are predicted as the same gene with a frameshift; P35 lipoprotein complement(973092..973526) Mycoplasma penetrans HF-2 1041061 NP_758130.1 CDS MYPE7400 NC_004432.1 973865 975013 R P35 lipoprotein complement(973865..975013) Mycoplasma penetrans HF-2 1041128 NP_758131.1 CDS MYPE7410 NC_004432.1 975304 976701 R hypothetical protein complement(975304..976701) Mycoplasma penetrans HF-2 1040616 NP_758132.1 CDS MYPE7420 NC_004432.1 976706 977152 R nitrogen fixation protein NifU complement(976706..977152) Mycoplasma penetrans HF-2 1041092 NP_758133.1 CDS MYPE7430 NC_004432.1 977139 978365 R aminotransferase NifS complement(977139..978365) Mycoplasma penetrans HF-2 1040532 NP_758134.1 CDS MYPE7440 NC_004432.1 978367 978987 R hypothetical protein complement(978367..978987) Mycoplasma penetrans HF-2 1040560 NP_758135.1 CDS MYPE7450 NC_004432.1 979006 979752 R ABC transporter ATP-binding protein complement(979006..979752) Mycoplasma penetrans HF-2 1040966 NP_758136.1 CDS MYPE7460 NC_004432.1 979900 980586 R acetyltransferase (GNAT) family protein complement(979900..980586) Mycoplasma penetrans HF-2 1041083 NP_758137.1 CDS MYPE7470 NC_004432.1 980991 983066 R ABC transporter ATP-binding protein complement(980991..983066) Mycoplasma penetrans HF-2 1040529 NP_758138.1 CDS MYPE7480 NC_004432.1 983164 983673 R MYPE7490 paralog; hypothetical protein complement(983164..983673) Mycoplasma penetrans HF-2 1041029 NP_758139.1 CDS MYPE7490 NC_004432.1 984101 984664 R paralog family; hypothetical protein complement(984101..984664) Mycoplasma penetrans HF-2 1040551 NP_758140.1 CDS MYPE7500 NC_004432.1 985032 985574 R MYPE7490 paralog; hypothetical protein complement(985032..985574) Mycoplasma penetrans HF-2 1041036 NP_758141.1 CDS MYPE7510 NC_004432.1 986000 986542 R MYPE7490 paralog; hypothetical protein complement(986000..986542) Mycoplasma penetrans HF-2 1040547 NP_758142.1 CDS MYPE7520 NC_004432.1 986910 987368 R MYPE7490 paralog; hypothetical protein complement(986910..987368) Mycoplasma penetrans HF-2 1040919 NP_758143.1 CDS MYPE7530 NC_004432.1 987711 989504 R MYPE2470 paralog; ABC transporter ATP-binding protein complement(987711..989504) Mycoplasma penetrans HF-2 1040565 NP_758144.1 CDS MYPE7540 NC_004432.1 989507 991276 R MYPE2470 paralog; ABC transporter ATP-binding protein complement(989507..991276) Mycoplasma penetrans HF-2 1040561 NP_758145.1 CDS rpsD NC_004432.1 991633 992241 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(991633..992241) Mycoplasma penetrans HF-2 1041149 NP_758146.1 CDS MYPE7560 NC_004432.1 992543 993472 D hypothetical protein 992543..993472 Mycoplasma penetrans HF-2 1040832 NP_758147.1 CDS MYPE7570 NC_004432.1 993492 995807 R partial sequence of MYPE7590 paralog, similar to lipoprotein of Mycoplasma genitalium U39713 Expect = 7.5e-91, Identities = 32%; lipoprotein complement(993492..995807) Mycoplasma penetrans HF-2 1040535 NP_758148.1 CDS MYPE7580 NC_004432.1 995770 996405 R lipoprotein complement(995770..996405) Mycoplasma penetrans HF-2 1040533 NP_758149.1 CDS MYPE7590 NC_004432.1 996518 999436 R paralog family, similar to lipoprotein of Mycoplasma genitalium U39713; lipoprotein complement(996518..999436) Mycoplasma penetrans HF-2 1040623 NP_758150.1 CDS MYPE7600 NC_004432.1 999563 1002460 R MYPE7590 paralog, similar to lipoprotein of Mycoplasma genitalium U39713; lipoprotein complement(999563..1002460) Mycoplasma penetrans HF-2 1040568 NP_758151.1 CDS MYPE7610 NC_004432.1 1002603 1005635 R MYPE7590 paralog, similar to lipoprotein of Mycoplasma genitalium U39713; lipoprotein complement(1002603..1005635) Mycoplasma penetrans HF-2 1040611 NP_758152.1 CDS MYPE7620 NC_004432.1 1005790 1008762 R MYPE7590 paralog, similar to lipoprotein of Mycoplasma genitalium U39713; lipoprotein complement(1005790..1008762) Mycoplasma penetrans HF-2 1040613 NP_758153.1 CDS MYPE7630 NC_004432.1 1008961 1009545 R hypothetical protein complement(1008961..1009545) Mycoplasma penetrans HF-2 1040589 NP_758154.1 CDS MYPE7640 NC_004432.1 1009740 1010477 R hypothetical protein complement(1009740..1010477) Mycoplasma penetrans HF-2 1041030 NP_758155.1 CDS MYPE7650 NC_004432.1 1010553 1011935 R MYPE5960 paralog, Pfam domain DUF234 archaebacterial proteins; hypothetical protein complement(1010553..1011935) Mycoplasma penetrans HF-2 1041045 NP_758156.1 CDS MYPE7660 NC_004432.1 1012111 1015242 R MYPE7720 paralog; hypothetical protein complement(1012111..1015242) Mycoplasma penetrans HF-2 1040612 NP_758157.1 CDS MYPE7670 NC_004432.1 1015884 1018013 R PTS system fructose-specific enzyme IIABC component complement(1015884..1018013) Mycoplasma penetrans HF-2 1040585 NP_758158.1 CDS MYPE7680 NC_004432.1 1018103 1018366 R hypothetical protein complement(1018103..1018366) Mycoplasma penetrans HF-2 1041120 NP_758159.1 CDS MYPE7690 NC_004432.1 1018351 1020285 R regulatory protein complement(1018351..1020285) Mycoplasma penetrans HF-2 1040614 NP_758160.1 CDS MYPE7700 NC_004432.1 1020372 1021295 R mannose-6-phosphate isomerase complement(1020372..1021295) Mycoplasma penetrans HF-2 1040523 NP_758161.1 CDS MYPE7710 NC_004432.1 1021478 1024606 R MYPE7720 paralog; hypothetical protein complement(1021478..1024606) Mycoplasma penetrans HF-2 1040583 NP_758162.1 CDS MYPE7720 NC_004432.1 1024895 1028020 R paralog family, predicted integral membrane protein; hypothetical protein complement(1024895..1028020) Mycoplasma penetrans HF-2 1040608 NP_758163.1 CDS MYPE7730 NC_004432.1 1028231 1031242 R MYPE7720 paralog; hypothetical protein complement(1028231..1031242) Mycoplasma penetrans HF-2 1040610 NP_758164.1 CDS MYPE7750 NC_004432.1 1031624 1032538 R 1-phosphofructokinase complement(1031624..1032538) Mycoplasma penetrans HF-2 1040627 NP_758165.1 CDS MYPE7760 NC_004432.1 1032492 1034708 R PTS system fructose-specific IIABC component complement(1032492..1034708) Mycoplasma penetrans HF-2 1040558 NP_758166.1 CDS MYPE7770 NC_004432.1 1034698 1035468 R transcriptional regulator DeoR family protein complement(1034698..1035468) Mycoplasma penetrans HF-2 1040559 NP_758167.1 CDS MYPE7780 NC_004432.1 1035998 1037554 D IS1202 transposase 1035998..1037554 Mycoplasma penetrans HF-2 1040615 NP_758168.1 CDS MYPE7790 NC_004432.1 1037799 1041953 R MYPE7800 paralog; hypothetical protein complement(1037799..1041953) Mycoplasma penetrans HF-2 1040584 NP_758169.1 CDS MYPE7800 NC_004432.1 1042320 1046654 R paralog family, predicted integral membrane protein; hypothetical protein complement(1042320..1046654) Mycoplasma penetrans HF-2 1040602 NP_758170.1 CDS MYPE7810 NC_004432.1 1046891 1050640 R MYPE7800 paralog; hypothetical protein complement(1046891..1050640) Mycoplasma penetrans HF-2 1040609 NP_758171.1 CDS MYPE7820 NC_004432.1 1050844 1051245 R hypothetical protein complement(1050844..1051245) Mycoplasma penetrans HF-2 1040588 NP_758172.1 CDS MYPE7830 NC_004432.1 1051528 1052781 D predicted ATPase, MYPE4220 paralog; hypothetical protein 1051528..1052781 Mycoplasma penetrans HF-2 1040590 NP_758173.1 CDS pyrE NC_004432.1 1053118 1053747 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(1053118..1053747) Mycoplasma penetrans HF-2 1041469 NP_758174.1 CDS MYPE7850 NC_004432.1 1053764 1054459 R type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(1053764..1054459) Mycoplasma penetrans HF-2 1040528 NP_758175.1 CDS MYPE7860 NC_004432.1 1054461 1055381 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B complement(1054461..1055381) Mycoplasma penetrans HF-2 1040625 NP_758176.1 CDS MYPE7870 NC_004432.1 1055385 1056182 R dihydroorotate dehydrogenase electron transfer subunit complement(1055385..1056182) Mycoplasma penetrans HF-2 1040606 NP_758177.1 CDS pyrC NC_004432.1 1056267 1057547 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(1056267..1057547) Mycoplasma penetrans HF-2 1040607 NP_758178.1 CDS pyrB NC_004432.1 1057556 1058458 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase complement(1057556..1058458) Mycoplasma penetrans HF-2 1040599 NP_758179.1 CDS MYPE7900 NC_004432.1 1058458 1058979 R regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase complement(1058458..1058979) Mycoplasma penetrans HF-2 1040598 NP_758180.1 CDS MYPE7910 NC_004432.1 1059326 1062826 R predicted integral membrane protein, paralog family; hypothetical protein complement(1059326..1062826) Mycoplasma penetrans HF-2 1040603 NP_758181.1 CDS MYPE7920 NC_004432.1 1062987 1066511 R MYPE7910 paralog; hypothetical protein complement(1062987..1066511) Mycoplasma penetrans HF-2 1040626 NP_758182.1 CDS MYPE7930 NC_004432.1 1066617 1070204 R MYPE7910 paralog; hypothetical protein complement(1066617..1070204) Mycoplasma penetrans HF-2 1040605 NP_758183.1 CDS MYPE7940 NC_004432.1 1070374 1071849 R hypothetical protein complement(1070374..1071849) Mycoplasma penetrans HF-2 1040604 NP_758184.1 CDS MYPE7950 NC_004432.1 1071969 1072748 D hypothetical protein 1071969..1072748 Mycoplasma penetrans HF-2 1040587 NP_758185.1 CDS MYPE7960 NC_004432.1 1072817 1074052 R tyrosyl-tRNA synthetase complement(1072817..1074052) Mycoplasma penetrans HF-2 1040593 NP_758186.1 CDS MYPE7970 NC_004432.1 1074084 1074884 R MYPE4720 paralog; aldo/keto reductase complement(1074084..1074884) Mycoplasma penetrans HF-2 1040570 NP_758187.1 CDS MYPE7980 NC_004432.1 1075160 1075678 D hypothetical protein 1075160..1075678 Mycoplasma penetrans HF-2 1040544 NP_758188.1 CDS MYPE7990 NC_004432.1 1075683 1076396 D glucose-inhibited division protein GidB 1075683..1076396 Mycoplasma penetrans HF-2 1040596 NP_758189.1 CDS MYPE8000 NC_004432.1 1076383 1077048 D hypothetical protein 1076383..1077048 Mycoplasma penetrans HF-2 1040601 NP_758190.1 CDS MYPE8010 NC_004432.1 1077052 1078464 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(1077052..1078464) Mycoplasma penetrans HF-2 1040600 NP_758191.1 CDS MYPE8020 NC_004432.1 1078466 1079212 R hypothetical protein complement(1078466..1079212) Mycoplasma penetrans HF-2 1040582 NP_758192.1 CDS MYPE8030 NC_004432.1 1079214 1080587 R ATP-dependent RNA helicase complement(1079214..1080587) Mycoplasma penetrans HF-2 1041577 NP_758193.1 CDS MYPE8040 NC_004432.1 1080743 1081462 R hypothetical protein complement(1080743..1081462) Mycoplasma penetrans HF-2 1041580 NP_758194.1 CDS MYPE8050 NC_004432.1 1081507 1083735 R hypothetical protein complement(1081507..1083735) Mycoplasma penetrans HF-2 1040586 NP_758195.1 CDS recR NC_004432.1 1083834 1084439 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(1083834..1084439) Mycoplasma penetrans HF-2 1041575 NP_758196.1 CDS MYPE8070 NC_004432.1 1084442 1084726 R hypothetical protein complement(1084442..1084726) Mycoplasma penetrans HF-2 1040579 NP_758197.1 CDS MYPE8080 NC_004432.1 1084733 1087147 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau complement(1084733..1087147) Mycoplasma penetrans HF-2 1041579 NP_758198.1 CDS MYPE8090 NC_004432.1 1087299 1088012 R hypothetical protein complement(1087299..1088012) Mycoplasma penetrans HF-2 1040581 NP_758199.1 CDS MYPE8100 NC_004432.1 1088005 1088658 R hypothetical protein complement(1088005..1088658) Mycoplasma penetrans HF-2 1040594 NP_758200.1 CDS MYPE8110 NC_004432.1 1088734 1089516 R similar to hydrolase of Mycoplasma pneumoniae AE000016 Expect=7.5e-42, Identities=37%, containing Pfam domain TatD related DNase : PF01026; hypothetical protein complement(1088734..1089516) Mycoplasma penetrans HF-2 1040595 NP_758201.1 CDS trmE NC_004432.1 1089527 1090861 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(1089527..1090861) Mycoplasma penetrans HF-2 1041567 NP_758202.1 CDS MYPE8130 NC_004432.1 1090864 1091691 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' complement(1090864..1091691) Mycoplasma penetrans HF-2 1041563 NP_758203.1 CDS MYPE8140 NC_004432.1 1091701 1092345 R thymidylate kinase complement(1091701..1092345) Mycoplasma penetrans HF-2 1041574 NP_758204.1 CDS MYPE8150 NC_004432.1 1092593 1093408 R hypothetical protein complement(1092593..1093408) Mycoplasma penetrans HF-2 1041578 NP_758205.1 CDS MYPE8160 NC_004432.1 1093589 1095004 R phosphoglycerate kinase complement(1093589..1095004) Mycoplasma penetrans HF-2 1041556 NP_758206.1 CDS MYPE8170 NC_004432.1 1095027 1096028 R glyceraladehyde-3-phosphate dehydrogenase complement(1095027..1096028) Mycoplasma penetrans HF-2 1041576 NP_758207.1 CDS MYPE8180 NC_004432.1 1096291 1097109 R integrase complement(1096291..1097109) Mycoplasma penetrans HF-2 1041573 NP_758208.1 CDS MYPE8190 NC_004432.1 1097228 1098475 D type I restriction-modification system S subunit 1097228..1098475 Mycoplasma penetrans HF-2 1041553 NP_758209.1 CDS MYPE8200 NC_004432.1 1098599 1100158 R type I restriction-modification system S subunit complement(1098599..1100158) Mycoplasma penetrans HF-2 1040577 NP_758210.1 CDS MYPE8210 NC_004432.1 1100165 1101637 R type I restriction-modification system M subunit complement(1100165..1101637) Mycoplasma penetrans HF-2 1041572 NP_758211.1 CDS MYPE8220 NC_004432.1 1101659 1103527 R type I restriction-modification system R subunit complement(1101659..1103527) Mycoplasma penetrans HF-2 1041569 NP_758212.1 CDS MYPE8230 NC_004432.1 1103478 1103999 R type I restriction-modification system R subunit, partial complement(1103478..1103999) Mycoplasma penetrans HF-2 1041550 NP_758213.1 CDS MYPE8250 NC_004432.1 1104359 1105471 R tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase complement(1104359..1105471) Mycoplasma penetrans HF-2 1041545 NP_758214.1 CDS MYPE8260 NC_004432.1 1105765 1105917 D hypothetical protein 1105765..1105917 Mycoplasma penetrans HF-2 1041542 NP_758215.1 CDS MYPE8270 NC_004432.1 1106271 1106678 D paralog family; hypothetical protein 1106271..1106678 Mycoplasma penetrans HF-2 1041551 NP_758216.1 CDS MYPE8280 NC_004432.1 1106884 1107273 D paralog of MYPE8270; hypothetical protein 1106884..1107273 Mycoplasma penetrans HF-2 1041554 NP_758217.1 CDS MYPE8290 NC_004432.1 1107478 1107825 D paralog of MYPE8270; hypothetical protein 1107478..1107825 Mycoplasma penetrans HF-2 1041539 NP_758218.1 CDS MYPE8300 NC_004432.1 1108030 1108377 D paralog of MYPE8270; hypothetical protein 1108030..1108377 Mycoplasma penetrans HF-2 1041544 NP_758219.1 CDS MYPE8310 NC_004432.1 1108514 1109182 R predicted integral membrane protein; hypothetical protein complement(1108514..1109182) Mycoplasma penetrans HF-2 1041552 NP_758220.1 CDS MYPE8320 NC_004432.1 1109345 1109749 R predicted integral membrane protein; hypothetical protein complement(1109345..1109749) Mycoplasma penetrans HF-2 1041548 NP_758221.1 CDS MYPE8330 NC_004432.1 1109781 1110683 R prolyl aminopeptidase complement(1109781..1110683) Mycoplasma penetrans HF-2 1041555 NP_758222.1 CDS MYPE8340 NC_004432.1 1110698 1111459 R hypothetical protein complement(1110698..1111459) Mycoplasma penetrans HF-2 1041533 NP_758223.1 CDS MYPE8350 NC_004432.1 1111461 1112135 R hypothetical protein complement(1111461..1112135) Mycoplasma penetrans HF-2 1041534 NP_758224.1 CDS MYPE8360 NC_004432.1 1112116 1113399 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase sigma factor complement(1112116..1113399) Mycoplasma penetrans HF-2 1041543 NP_758225.1 CDS MYPE8370 NC_004432.1 1113592 1115022 R cell division protein FtsZ complement(1113592..1115022) Mycoplasma penetrans HF-2 1041546 NP_758226.1 CDS MYPE8380 NC_004432.1 1115598 1117076 R hypothetical protein complement(1115598..1117076) Mycoplasma penetrans HF-2 1041530 NP_758227.1 CDS MYPE8390 NC_004432.1 1117210 1118805 R hypothetical protein complement(1117210..1118805) Mycoplasma penetrans HF-2 1041537 NP_758228.1 CDS MYPE8400 NC_004432.1 1118942 1121821 R hypothetical protein complement(1118942..1121821) Mycoplasma penetrans HF-2 1041538 NP_758229.1 CDS MYPE8410 NC_004432.1 1121987 1122979 R hypothetical protein complement(1121987..1122979) Mycoplasma penetrans HF-2 1041547 NP_758230.1 CDS lysS NC_004432.1 1122982 1124451 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(1122982..1124451) Mycoplasma penetrans HF-2 1041522 NP_758231.1 CDS MYPE8430 NC_004432.1 1124580 1127846 R MYPE8450 paralog; hypothetical protein complement(1124580..1127846) Mycoplasma penetrans HF-2 1041526 NP_758232.1 CDS MYPE8440 NC_004432.1 1128026 1131283 R MYPE8450 paralog; hypothetical protein complement(1128026..1131283) Mycoplasma penetrans HF-2 1041532 NP_758233.1 CDS MYPE8450 NC_004432.1 1131560 1134814 R paralog family; hypothetical protein complement(1131560..1134814) Mycoplasma penetrans HF-2 1041540 NP_758234.1 CDS MYPE8460 NC_004432.1 1134961 1138755 R ATP/GTP-binding protein complement(1134961..1138755) Mycoplasma penetrans HF-2 1041523 NP_758235.1 CDS MYPE8470 NC_004432.1 1138967 1139413 R MYPE8480 paralog; hypothetical protein complement(1138967..1139413) Mycoplasma penetrans HF-2 1041525 NP_758236.1 CDS MYPE8480 NC_004432.1 1139542 1140087 R paralog family; hypothetical protein complement(1139542..1140087) Mycoplasma penetrans HF-2 1041529 NP_758237.1 CDS MYPE8490 NC_004432.1 1140671 1143949 R MYPE8450 paralog; hypothetical protein complement(1140671..1143949) Mycoplasma penetrans HF-2 1041541 NP_758238.1 CDS MYPE8500 NC_004432.1 1144066 1145286 R protease complement(1144066..1145286) Mycoplasma penetrans HF-2 1041515 NP_758239.1 CDS MYPE8510 NC_004432.1 1145289 1146221 R protease complement(1145289..1146221) Mycoplasma penetrans HF-2 1041519 NP_758240.1 CDS MYPE8520 NC_004432.1 1146206 1146793 R O-methyltransferase complement(1146206..1146793) Mycoplasma penetrans HF-2 1041527 NP_758241.1 CDS MYPE8530 NC_004432.1 1146810 1147238 R hypothetical protein complement(1146810..1147238) Mycoplasma penetrans HF-2 1041514 NP_758242.1 CDS alaS NC_004432.1 1147222 1150014 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(1147222..1150014) Mycoplasma penetrans HF-2 1041516 NP_758243.1 CDS MYPE8550 NC_004432.1 1150643 1152241 D MYPE8600 paralog; lipoprotein 1150643..1152241 Mycoplasma penetrans HF-2 1041528 NP_758244.1 CDS MYPE8560 NC_004432.1 1152322 1153800 D haloacid dehalogenase 1152322..1153800 Mycoplasma penetrans HF-2 1041531 NP_758245.1 CDS MYPE8570 NC_004432.1 1153801 1155585 D spermidine/putrescine transport ATP-binding protein PotA 1153801..1155585 Mycoplasma penetrans HF-2 1041474 NP_758246.1 CDS MYPE8580 NC_004432.1 1155554 1156459 D spermidine/putrescine transport system permease PotB 1155554..1156459 Mycoplasma penetrans HF-2 1041509 NP_758247.1 CDS MYPE8590 NC_004432.1 1156452 1157303 D spermidine/putrescine transport system permease PotC 1156452..1157303 Mycoplasma penetrans HF-2 1041493 NP_758248.1 CDS MYPE8600 NC_004432.1 1157291 1158973 D paralog family; lipoprotein 1157291..1158973 Mycoplasma penetrans HF-2 1041520 NP_758249.1 CDS MYPE8610 NC_004432.1 1158951 1159916 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 1158951..1159916 Mycoplasma penetrans HF-2 1041490 NP_758250.1 CDS MYPE8620 NC_004432.1 1160388 1161509 D hypothetical protein 1160388..1161509 Mycoplasma penetrans HF-2 1041513 NP_758251.1 CDS MYPE8630 NC_004432.1 1161493 1162005 D hypothetical protein 1161493..1162005 Mycoplasma penetrans HF-2 1041521 NP_758252.1 CDS MYPE8640 NC_004432.1 1162174 1163937 R predicted integral membrane protein; permease complement(1162174..1163937) Mycoplasma penetrans HF-2 1041524 NP_758253.1 CDS MYPE8650 NC_004432.1 1164167 1165153 D lipoate protein ligase A 1164167..1165153 Mycoplasma penetrans HF-2 1041472 NP_758254.1 CDS MYPE8660 NC_004432.1 1165989 1167953 R predicted integral membrane protein; Trk-type cation transport protein complement(1165989..1167953) Mycoplasma penetrans HF-2 1041441 NP_758255.1 CDS MYPE8670 NC_004432.1 1168261 1168644 R hypothetical protein complement(1168261..1168644) Mycoplasma penetrans HF-2 1041510 NP_758256.1 CDS MYPE8680 NC_004432.1 1168840 1170135 R hypothetical protein complement(1168840..1170135) Mycoplasma penetrans HF-2 1041458 NP_758257.1 CDS MYPE8690 NC_004432.1 1170274 1171866 D formate-tetrahydrofolate ligase 1170274..1171866 Mycoplasma penetrans HF-2 1041462 NP_758258.1 CDS MYPE8700 NC_004432.1 1171921 1173828 R end peptidase complement(1171921..1173828) Mycoplasma penetrans HF-2 1041511 NP_758259.1 CDS MYPE8710 NC_004432.1 1173952 1175967 R heavy-metal transporting P-type ATPase complement(1173952..1175967) Mycoplasma penetrans HF-2 1041446 NP_758260.1 CDS MYPE8720 NC_004432.1 1176080 1176295 R heavy-metal transporting ATPase, partial complement(1176080..1176295) Mycoplasma penetrans HF-2 1041434 NP_758261.1 CDS MYPE8730 NC_004432.1 1176403 1176990 R hypothetical protein complement(1176403..1176990) Mycoplasma penetrans HF-2 1041440 NP_758262.1 CDS MYPE8750 NC_004432.1 1176983 1179358 R oligopeptide ABC transporter ATP-binding protein complement(1176983..1179358) Mycoplasma penetrans HF-2 1041461 NP_758263.1 CDS MYPE8760 NC_004432.1 1179372 1180892 R oligopeptide ABC transporter ATP-binding protein complement(1179372..1180892) Mycoplasma penetrans HF-2 1041428 NP_758264.1 CDS MYPE8770 NC_004432.1 1180895 1182073 R oligopeptide ABC transporter permease protein complement(1180895..1182073) Mycoplasma penetrans HF-2 1041433 NP_758265.1 CDS MYPE8780 NC_004432.1 1182077 1183321 R oligopeptide ABC transporter permease protein complement(1182077..1183321) Mycoplasma penetrans HF-2 1041432 NP_758266.1 CDS MYPE8790 NC_004432.1 1183561 1183731 R hypothetical protein complement(1183561..1183731) Mycoplasma penetrans HF-2 1041471 NP_758267.1 CDS MYPE8800 NC_004432.1 1184312 1184827 D hypothetical protein 1184312..1184827 Mycoplasma penetrans HF-2 1041425 NP_758268.1 CDS MYPE8810 NC_004432.1 1184942 1185364 R hypothetical protein complement(1184942..1185364) Mycoplasma penetrans HF-2 1041406 NP_758269.1 CDS ileS NC_004432.1 1185818 1188520 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(1185818..1188520) Mycoplasma penetrans HF-2 1041417 NP_758270.1 CDS MYPE8830 NC_004432.1 1188699 1189685 R glycosyltransferase complement(1188699..1189685) Mycoplasma penetrans HF-2 1041423 NP_758271.1 CDS MYPE8840 NC_004432.1 1189724 1190770 R transcription antitermination factor complement(1189724..1190770) Mycoplasma penetrans HF-2 1041416 NP_758272.1 CDS MYPE8850 NC_004432.1 1190805 1191158 R preprotein translocase subunit SecE complement(1190805..1191158) Mycoplasma penetrans HF-2 1041415 NP_758273.1 CDS MYPE8860 NC_004432.1 1191716 1192675 D hypothetical protein 1191716..1192675 Mycoplasma penetrans HF-2 1041408 NP_758274.1 CDS MYPE8870 NC_004432.1 1192810 1194078 R hypothetical protein complement(1192810..1194078) Mycoplasma penetrans HF-2 1041400 NP_758275.1 CDS MYPE8880 NC_004432.1 1194198 1194911 R hypothetical protein complement(1194198..1194911) Mycoplasma penetrans HF-2 1041386 NP_758276.1 CDS MYPE8890 NC_004432.1 1194933 1196921 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(1194933..1196921) Mycoplasma penetrans HF-2 1041414 NP_758277.1 CDS MYPE8900 NC_004432.1 1196989 1197804 R hypothetical protein complement(1196989..1197804) Mycoplasma penetrans HF-2 1041395 NP_758278.1 CDS MYPE8910 NC_004432.1 1197903 1200119 R ATP-dependent DNA helicase complement(1197903..1200119) Mycoplasma penetrans HF-2 1041407 NP_758279.1 CDS MYPE8920 NC_004432.1 1200122 1200919 R hypothetical protein complement(1200122..1200919) Mycoplasma penetrans HF-2 1041404 NP_758280.1 CDS MYPE8930 NC_004432.1 1200933 1201892 R glycosyltransferase complement(1200933..1201892) Mycoplasma penetrans HF-2 1041421 NP_758281.1 CDS MYPE8940 NC_004432.1 1201998 1202300 R hypothetical protein complement(1201998..1202300) Mycoplasma penetrans HF-2 1041418 NP_758282.1 CDS MYPE8950 NC_004432.1 1202326 1203678 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(1202326..1203678) Mycoplasma penetrans HF-2 1041382 NP_758283.1 CDS MYPE8960 NC_004432.1 1203839 1204546 R heat shock protein GrpE complement(1203839..1204546) Mycoplasma penetrans HF-2 1041348 NP_758284.1 CDS MYPE8970 NC_004432.1 1204550 1205716 R molecular chaperone DnaJ complement(1204550..1205716) Mycoplasma penetrans HF-2 1041403 NP_758285.1 CDS MYPE8980 NC_004432.1 1206125 1206586 D phosphotyrosine protein phosphatase 1206125..1206586 Mycoplasma penetrans HF-2 1041332 NP_758286.1 CDS MYPE8990 NC_004432.1 1207053 1208093 R NADH-dependent flavin oxidoreductase complement(1207053..1208093) Mycoplasma penetrans HF-2 1041362 NP_758287.1 CDS MYPE9000 NC_004432.1 1208453 1210129 R hypothetical protein complement(1208453..1210129) Mycoplasma penetrans HF-2 1041378 NP_758288.1 CDS MYPE9010 NC_004432.1 1210287 1210808 R hypothetical protein complement(1210287..1210808) Mycoplasma penetrans HF-2 1041412 NP_758289.1 CDS MYPE9020 NC_004432.1 1210894 1211712 R hypothetical protein complement(1210894..1211712) Mycoplasma penetrans HF-2 1041411 NP_758290.1 CDS MYPE9030 NC_004432.1 1211705 1212268 R cysteinyl-tRNA synthetase complement(1211705..1212268) Mycoplasma penetrans HF-2 1041357 NP_758291.1 CDS MYPE9040 NC_004432.1 1212412 1215537 R helicase/SNF2 domain-containing protein complement(1212412..1215537) Mycoplasma penetrans HF-2 1041320 NP_758292.1 CDS MYPE9050 NC_004432.1 1215586 1216449 R hypothetical protein complement(1215586..1216449) Mycoplasma penetrans HF-2 1041359 NP_758293.1 CDS MYPE9060 NC_004432.1 1216451 1217578 R serine/threonine protein kinase complement(1216451..1217578) Mycoplasma penetrans HF-2 1041374 NP_758294.1 CDS MYPE9070 NC_004432.1 1217816 1218340 R MYPE950 paralog; hypothetical protein complement(1217816..1218340) Mycoplasma penetrans HF-2 1041343 NP_758295.1 CDS MYPE9080 NC_004432.1 1218609 1219076 R MYPE950 paralog; hypothetical protein complement(1218609..1219076) Mycoplasma penetrans HF-2 1041338 NP_758296.1 CDS MYPE9090 NC_004432.1 1219638 1220195 R hypothetical protein complement(1219638..1220195) Mycoplasma penetrans HF-2 1041325 NP_758297.1 CDS uvrA NC_004432.1 1220198 1223056 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(1220198..1223056) Mycoplasma penetrans HF-2 1041326 NP_758298.1 CDS MYPE9110 NC_004432.1 1223114 1225057 R similar to Pfam domain pertussis toxin S1subunit, PF02917; hypothetical protein complement(1223114..1225057) Mycoplasma penetrans HF-2 1041350 NP_758299.1 CDS MYPE9120 NC_004432.1 1225077 1225574 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA complement(1225077..1225574) Mycoplasma penetrans HF-2 1041287 NP_758300.1 CDS MYPE9130 NC_004432.1 1225787 1226152 R hypothetical protein complement(1225787..1226152) Mycoplasma penetrans HF-2 1041293 NP_758301.1 CDS rplT NC_004432.1 1226351 1226698 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(1226351..1226698) Mycoplasma penetrans HF-2 1041345 NP_758302.1 CDS infC NC_004432.1 1226940 1227452 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(1226940..1227452) Mycoplasma penetrans HF-2 1041323 NP_758303.1 CDS MYPE9170 NC_004432.1 1227840 1232216 R DNA polymerase III subunit alpha complement(1227840..1232216) Mycoplasma penetrans HF-2 1041301 NP_758304.1 CDS rpsU NC_004432.1 1232379 1232573 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 1232379..1232573 Mycoplasma penetrans HF-2 1041322 NP_758305.1 CDS MYPE9190 NC_004432.1 1232631 1232876 R hypothetical protein complement(1232631..1232876) Mycoplasma penetrans HF-2 1041324 NP_758306.1 CDS MYPE9200 NC_004432.1 1232950 1233129 R ribosomal protein L32 complement(1232950..1233129) Mycoplasma penetrans HF-2 1041321 NP_758307.1 CDS MYPE9240 NC_004432.1 1238420 1241167 R hypothetical protein complement(1238420..1241167) Mycoplasma penetrans HF-2 1041290 NP_758308.1 CDS MYPE9250 NC_004432.1 1241422 1241991 D hypothetical protein 1241422..1241991 Mycoplasma penetrans HF-2 1041291 NP_758309.1 CDS pheT NC_004432.1 1242034 1244337 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(1242034..1244337) Mycoplasma penetrans HF-2 1041292 NP_758310.1 CDS pheS NC_004432.1 1244414 1245439 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(1244414..1245439) Mycoplasma penetrans HF-2 1041286 NP_758311.1 CDS MYPE9280 NC_004432.1 1245544 1246242 D tRNA pseudouridine 5S synthase 1245544..1246242 Mycoplasma penetrans HF-2 1041289 NP_758312.1 CDS MYPE9290 NC_004432.1 1246239 1246694 R hypothetical protein complement(1246239..1246694) Mycoplasma penetrans HF-2 1041283 NP_758313.1 CDS MYPE9300 NC_004432.1 1246704 1247549 R lipase complement(1246704..1247549) Mycoplasma penetrans HF-2 1041288 NP_758314.1 CDS MYPE9310 NC_004432.1 1247562 1248431 R predicted bifunctional enzyme; riboflavin kinase-FAD synthetase complement(1247562..1248431) Mycoplasma penetrans HF-2 1041274 NP_758315.1 CDS MYPE9320 NC_004432.1 1248566 1249021 R hypothetical protein complement(1248566..1249021) Mycoplasma penetrans HF-2 1041279 NP_758316.1 CDS MYPE9330 NC_004432.1 1249089 1250051 R thioredoxin reductase complement(1249089..1250051) Mycoplasma penetrans HF-2 1041281 NP_758317.1 CDS MYPE9340 NC_004432.1 1250148 1250819 R phosphate transport system regulatory protein complement(1250148..1250819) Mycoplasma penetrans HF-2 1041282 NP_758318.1 CDS MYPE9350 NC_004432.1 1250822 1251688 R MYPE3080 paralog; phosphate ABC transporter permease PstB complement(1250822..1251688) Mycoplasma penetrans HF-2 1041278 NP_758319.1 CDS MYPE9360 NC_004432.1 1251706 1253721 R phosphate ABC transporter permease PstA complement(1251706..1253721) Mycoplasma penetrans HF-2 1041276 NP_758320.1 CDS MYPE9370 NC_004432.1 1253728 1254930 R phosphate binding protein PstS complement(1253728..1254930) Mycoplasma penetrans HF-2 1041270 NP_758321.1 CDS MYPE9380 NC_004432.1 1255108 1258371 R methionyl-tRNA synthetase complement(1255108..1258371) Mycoplasma penetrans HF-2 1041273 NP_758322.1 CDS MYPE9390 NC_004432.1 1258364 1261099 R phosphoenolpyruvate carboxylase complement(1258364..1261099) Mycoplasma penetrans HF-2 1041268 NP_758323.1 CDS ispG NC_004432.1 1261211 1262299 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1261211..1262299 Mycoplasma penetrans HF-2 1041280 NP_758324.1 CDS MYPE9410 NC_004432.1 1262302 1262892 D hypothetical protein 1262302..1262892 Mycoplasma penetrans HF-2 1041269 NP_758325.1 CDS MYPE9420 NC_004432.1 1262904 1263986 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1262904..1263986 Mycoplasma penetrans HF-2 1041275 NP_758326.1 CDS MYPE9430 NC_004432.1 1263983 1265659 R hypothetical protein complement(1263983..1265659) Mycoplasma penetrans HF-2 1041272 NP_758327.1 CDS MYPE9440 NC_004432.1 1265831 1266388 R nucleotidyltransferase complement(1265831..1266388) Mycoplasma penetrans HF-2 1041285 NP_758328.1 CDS MYPE9450 NC_004432.1 1266376 1267374 R phosphoribosylpyrophosphate synthetase complement(1266376..1267374) Mycoplasma penetrans HF-2 1041284 NP_758329.1 CDS MYPE9460 NC_004432.1 1267458 1268120 R ribonuclease H-related protein complement(1267458..1268120) Mycoplasma penetrans HF-2 1041266 NP_758330.1 CDS MYPE9470 NC_004432.1 1268169 1268954 R hypothetical protein complement(1268169..1268954) Mycoplasma penetrans HF-2 1041267 NP_758331.1 CDS MYPE9480 NC_004432.1 1269032 1269847 R choline kinase complement(1269032..1269847) Mycoplasma penetrans HF-2 1041271 NP_758332.1 CDS MYPE9490 NC_004432.1 1269938 1271803 R molecular chaperone DnaK complement(1269938..1271803) Mycoplasma penetrans HF-2 1041263 NP_758333.1 CDS MYPE9500 NC_004432.1 1271891 1272748 D aldo/keto reductase family, MYPE4720 paralog; oxidoreductase 1271891..1272748 Mycoplasma penetrans HF-2 1041265 NP_758334.1 CDS MYPE9510 NC_004432.1 1272807 1273169 R hypothetical protein complement(1272807..1273169) Mycoplasma penetrans HF-2 1041264 NP_758335.1 CDS MYPE9520 NC_004432.1 1273174 1275345 R hypothetical protein complement(1273174..1275345) Mycoplasma penetrans HF-2 1041277 NP_758336.1 CDS MYPE9530 NC_004432.1 1275510 1276583 D DNA polymerase III 1275510..1276583 Mycoplasma penetrans HF-2 1041262 NP_758337.1 CDS MYPE9540 NC_004432.1 1276623 1277786 R CDP-diglyceride synthetase complement(1276623..1277786) Mycoplasma penetrans HF-2 1041259 NP_758338.1 CDS MYPE9550 NC_004432.1 1277868 1278545 R undecaprenyl diphosphate synthase complement(1277868..1278545) Mycoplasma penetrans HF-2 1041260 NP_758339.1 CDS MYPE9560 NC_004432.1 1278547 1279098 R ribosome recycling factor complement(1278547..1279098) Mycoplasma penetrans HF-2 1041261 NP_758340.1 CDS MYPE9570 NC_004432.1 1279127 1280080 R uridylate kinase complement(1279127..1280080) Mycoplasma penetrans HF-2 1041256 NP_758341.1 CDS tsf NC_004432.1 1280134 1281012 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(1280134..1281012) Mycoplasma penetrans HF-2 1041255 NP_758342.1 CDS MYPE9600 NC_004432.1 1281224 1282204 R paralog family, predicted integral membrane protein; hypothetical protein complement(1281224..1282204) Mycoplasma penetrans HF-2 1041258 NP_758343.1 CDS MYPE9610 NC_004432.1 1282338 1282670 R MYPE9600 paralog :C-terminal; hypothetical protein complement(1282338..1282670) Mycoplasma penetrans HF-2 1041242 NP_758344.1 CDS MYPE9620 NC_004432.1 1282913 1284121 R transposase complement(1282913..1284121) Mycoplasma penetrans HF-2 1041257 NP_758345.1 CDS MYPE9630 NC_004432.1 1284157 1284693 R MYPE9600 paralog :N-terminal; hypothetical protein complement(1284157..1284693) Mycoplasma penetrans HF-2 1041243 NP_758346.1 CDS MYPE9640 NC_004432.1 1284919 1285866 R L-lactate dehydrogenase complement(1284919..1285866) Mycoplasma penetrans HF-2 1041245 NP_758347.1 CDS MYPE9650 NC_004432.1 1285856 1286308 R lipopolysaccharide biosynthesis enzyme KdtB complement(1285856..1286308) Mycoplasma penetrans HF-2 1041236 NP_758348.1 CDS rpsB NC_004432.1 1286361 1287464 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(1286361..1287464) Mycoplasma penetrans HF-2 1041229 NP_758349.1 CDS MYPE9670 NC_004432.1 1287783 1288424 D GntR family transcriptional regulator 1287783..1288424 Mycoplasma penetrans HF-2 1041232 NP_758350.1 CDS MYPE9680 NC_004432.1 1288515 1290821 D PTS system sucrose-specific IIABC component 1288515..1290821 Mycoplasma penetrans HF-2 1041231 NP_758351.1 CDS MYPE9690 NC_004432.1 1290867 1292231 D sucrose-6-phosphate hydrolase 1290867..1292231 Mycoplasma penetrans HF-2 1041227 NP_758352.1 CDS MYPE9700 NC_004432.1 1292235 1293119 D glucose kinase or transcriptional regulator 1292235..1293119 Mycoplasma penetrans HF-2 1041237 NP_758353.1 CDS MYPE9710 NC_004432.1 1293280 1294512 D hypothetical protein 1293280..1294512 Mycoplasma penetrans HF-2 1041160 NP_758354.1 CDS MYPE9720 NC_004432.1 1294694 1295083 R hypothetical protein complement(1294694..1295083) Mycoplasma penetrans HF-2 1041166 NP_758355.1 CDS MYPE9730 NC_004432.1 1295149 1295319 R hypothetical protein complement(1295149..1295319) Mycoplasma penetrans HF-2 1041228 NP_758356.1 CDS truA NC_004432.1 1295429 1296154 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(1295429..1296154) Mycoplasma penetrans HF-2 1041168 NP_758357.1 CDS MYPE9750 NC_004432.1 1296165 1297358 R cobalt transport membrane protein complement(1296165..1297358) Mycoplasma penetrans HF-2 1041197 NP_758358.1 CDS cbiO NC_004432.1 1297444 1298664 R with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; cobalt transporter ATP-binding subunit complement(1297444..1298664) Mycoplasma penetrans HF-2 1041190 NP_758359.1 CDS cbiO NC_004432.1 1298649 1299512 R with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; cobalt transporter ATP-binding subunit complement(1298649..1299512) Mycoplasma penetrans HF-2 1041167 NP_758360.1 CDS MYPE9780 NC_004432.1 1299733 1300749 D IS1630-like transposase 1299733..1300749 Mycoplasma penetrans HF-2 1041225 NP_758361.1 CDS MYPE9790 NC_004432.1 1301030 1302136 R similar to endonuclease; hypothetical protein complement(1301030..1302136) Mycoplasma penetrans HF-2 1041156 NP_758362.1 CDS MYPE9800 NC_004432.1 1302153 1303433 R cytosine-specific DNA methylase complement(1302153..1303433) Mycoplasma penetrans HF-2 1041154 NP_758363.1 CDS MYPE9810 NC_004432.1 1303628 1304566 R hypothetical protein complement(1303628..1304566) Mycoplasma penetrans HF-2 1041222 NP_758364.1 CDS MYPE9820 NC_004432.1 1304594 1306759 R hypothetical protein complement(1304594..1306759) Mycoplasma penetrans HF-2 1041159 NP_758365.1 CDS MYPE9830 NC_004432.1 1306761 1308293 R hypothetical protein complement(1306761..1308293) Mycoplasma penetrans HF-2 1041165 NP_758366.1 CDS MYPE9840 NC_004432.1 1308740 1308988 R paralog of MYPE9860 and MYPE8270; hypothetical protein complement(1308740..1308988) Mycoplasma penetrans HF-2 1041164 NP_758367.1 CDS MYPE9850 NC_004432.1 1309225 1309395 R paralog of MYPE9860 and MYPE8270; hypothetical protein complement(1309225..1309395) Mycoplasma penetrans HF-2 1041161 NP_758368.1 CDS MYPE9860 NC_004432.1 1309632 1309973 R MYPE8270 paralog; hypothetical protein complement(1309632..1309973) Mycoplasma penetrans HF-2 1041163 NP_758369.1 CDS MYPE9870 NC_004432.1 1310322 1311140 R short-chain alcohol dehydrogenase family enzyme complement(1310322..1311140) Mycoplasma penetrans HF-2 1041162 NP_758370.1 CDS MYPE9880 NC_004432.1 1311133 1311744 R hypothetical protein complement(1311133..1311744) Mycoplasma penetrans HF-2 1041145 NP_758371.1 CDS MYPE9890 NC_004432.1 1311717 1313186 R aminopeptidase complement(1311717..1313186) Mycoplasma penetrans HF-2 1041146 NP_758372.1 CDS MYPE9900 NC_004432.1 1313188 1314732 R aminopeptidase complement(1313188..1314732) Mycoplasma penetrans HF-2 1041141 NP_758373.1 CDS rplQ NC_004432.1 1314801 1315160 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(1314801..1315160) Mycoplasma penetrans HF-2 1041153 NP_758374.1 CDS MYPE9920 NC_004432.1 1315171 1316166 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(1315171..1316166) Mycoplasma penetrans HF-2 1041158 NP_758375.1 CDS MYPE9930 NC_004432.1 1316181 1316552 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(1316181..1316552) Mycoplasma penetrans HF-2 1041157 NP_758376.1 CDS rpsM NC_004432.1 1316568 1316942 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(1316568..1316942) Mycoplasma penetrans HF-2 1041155 NP_758377.1 CDS MYPE9950 NC_004432.1 1317093 1317311 R translation initiation factor IF-1 complement(1317093..1317311) Mycoplasma penetrans HF-2 1041152 NP_758378.1 CDS MYPE9960 NC_004432.1 1317319 1318059 R methionine aminopeptidase complement(1317319..1318059) Mycoplasma penetrans HF-2 1041125 NP_758379.1 CDS MYPE9970 NC_004432.1 1318062 1318709 R adenylate kinase complement(1318062..1318709) Mycoplasma penetrans HF-2 1041116 NP_758380.1 CDS secY NC_004432.1 1318721 1320142 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(1318721..1320142) Mycoplasma penetrans HF-2 1041144 NP_758381.1 CDS rplO NC_004432.1 1320166 1320609 R late assembly protein; 50S ribosomal protein L15 complement(1320166..1320609) Mycoplasma penetrans HF-2 1041151 NP_758382.1 CDS rpsE NC_004432.1 1320613 1321317 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(1320613..1321317) Mycoplasma penetrans HF-2 1041150 NP_758383.1 CDS rplR NC_004432.1 1321339 1321698 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(1321339..1321698) Mycoplasma penetrans HF-2 1041147 NP_758384.1 CDS rplF NC_004432.1 1321714 1322265 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(1321714..1322265) Mycoplasma penetrans HF-2 1041143 NP_758385.1 CDS rpsH NC_004432.1 1322276 1322671 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(1322276..1322671) Mycoplasma penetrans HF-2 1041119 NP_758386.1 CDS rpsN NC_004432.1 1322688 1322873 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 complement(1322688..1322873) Mycoplasma penetrans HF-2 1041114 NP_758387.1 CDS rplE NC_004432.1 1322875 1323438 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(1322875..1323438) Mycoplasma penetrans HF-2 1041124 NP_758388.1 CDS MYPE10060 NC_004432.1 1323447 1323770 R ribosomal protein L24 complement(1323447..1323770) Mycoplasma penetrans HF-2 1041123 NP_758389.1 CDS rplN NC_004432.1 1323783 1324151 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(1323783..1324151) Mycoplasma penetrans HF-2 1041142 NP_758390.1 CDS rpsQ NC_004432.1 1324182 1324457 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(1324182..1324457) Mycoplasma penetrans HF-2 1041108 NP_758391.1 CDS MYPE10090 NC_004432.1 1324476 1325729 R 30S ribosomal protein S3 complement(1324476..1325729) Mycoplasma penetrans HF-2 1041139 NP_758392.1 CDS MYPE10100 NC_004432.1 1325732 1326466 R ribosomal protein L29 complement(1325732..1326466) Mycoplasma penetrans HF-2 1041129 NP_758393.1 CDS rplP NC_004432.1 1326453 1326875 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(1326453..1326875) Mycoplasma penetrans HF-2 1041088 NP_758394.1 CDS MYPE10120 NC_004432.1 1326898 1327923 R fusion of L22 and COG4933; 50S ribosomal protein L22 complement(1326898..1327923) Mycoplasma penetrans HF-2 1041107 NP_758395.1 CDS MYPE10130 NC_004432.1 1327941 1328174 R ribosomal protein S19 complement(1327941..1328174) Mycoplasma penetrans HF-2 1041117 NP_758396.1 CDS rplB NC_004432.1 1328232 1329071 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(1328232..1329071) Mycoplasma penetrans HF-2 1041121 NP_758397.1 CDS rplW NC_004432.1 1329106 1329522 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(1329106..1329522) Mycoplasma penetrans HF-2 1041091 NP_758398.1 CDS rplD NC_004432.1 1329522 1330163 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(1329522..1330163) Mycoplasma penetrans HF-2 1041103 NP_758399.2 CDS rplC NC_004432.1 1330163 1331095 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(1330163..1331095) Mycoplasma penetrans HF-2 1041106 NP_758400.1 CDS rpsJ NC_004432.1 1331115 1331504 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(1331115..1331504) Mycoplasma penetrans HF-2 1041122 NP_758401.1 CDS MYPE10200 NC_004432.1 1331694 1332524 R haloacid dehalogenase complement(1331694..1332524) Mycoplasma penetrans HF-2 1041078 NP_758402.1 CDS MYPE10210 NC_004432.1 1332546 1333313 R similar to Pfam domain Bvg accessory factor PF03309; transcriptional regulator complement(1332546..1333313) Mycoplasma penetrans HF-2 1041086 NP_758403.1 CDS MYPE10220 NC_004432.1 1333337 1333993 R ribonuclease HII complement(1333337..1333993) Mycoplasma penetrans HF-2 1041102 NP_758404.1 CDS MYPE10230 NC_004432.1 1334047 1334565 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(1334047..1334565) Mycoplasma penetrans HF-2 1041079 NP_758405.1 CDS MYPE10240 NC_004432.1 1334575 1337958 R protein-export membrane protein SecD complement(1334575..1337958) Mycoplasma penetrans HF-2 1041082 NP_758406.1 CDS MYPE10250 NC_004432.1 1338074 1340542 R cell division protein FtsH complement(1338074..1340542) Mycoplasma penetrans HF-2 1041087 NP_758407.1 CDS MYPE10260 NC_004432.1 1340596 1341129 R hypoxanthine-guanine phosphoribosyltransferase complement(1340596..1341129) Mycoplasma penetrans HF-2 1041111 NP_758408.1 CDS ispF NC_004432.1 1341227 1341724 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(1341227..1341724) Mycoplasma penetrans HF-2 1041110 NP_758409.1 CDS MYPE10280 NC_004432.1 1341772 1342632 R MYPE3080 paralog; ABC transporter ATP-binding protein complement(1341772..1342632) Mycoplasma penetrans HF-2 1041077 NP_758410.1 CDS MYPE10290 NC_004432.1 1342637 1347094 R ABC transporter membrane protein complement(1342637..1347094) Mycoplasma penetrans HF-2 1041065 NP_758411.1 CDS upp NC_004432.1 1347248 1347868 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 1347248..1347868 Mycoplasma penetrans HF-2 1041090 NP_758412.1 CDS MYPE10310 NC_004432.1 1347932 1349068 R guanosine 5'-monophosphate oxidoreductase complement(1347932..1349068) Mycoplasma penetrans HF-2 1041066 NP_758413.1 CDS MYPE10320 NC_004432.1 1349097 1349759 R thymidine kinase complement(1349097..1349759) Mycoplasma penetrans HF-2 1041069 NP_758414.1 CDS MYPE10330 NC_004432.1 1349771 1350868 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(1349771..1350868) Mycoplasma penetrans HF-2 1041075 NP_758415.1 CDS MYPE10340 NC_004432.1 1350944 1351834 R fructose-bisphosphate aldolase complement(1350944..1351834) Mycoplasma penetrans HF-2 1041094 NP_758416.1 CDS MYPE10350 NC_004432.1 1351913 1352425 R participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; DNA-directed RNA polymerase subunit delta complement(1351913..1352425) Mycoplasma penetrans HF-2 1041093 NP_758417.1 CDS MYPE10360 NC_004432.1 1352460 1353731 R hypothetical protein complement(1352460..1353731) Mycoplasma penetrans HF-2 1041067 NP_758418.1 CDS gltX NC_004432.1 1353732 1355195 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(1353732..1355195) Mycoplasma penetrans HF-2 1041059 NP_758419.1 CDS MYPE10380 NC_004432.1 1355211 1355996 R hypothetical protein complement(1355211..1355996) Mycoplasma penetrans HF-2 1041074 NP_758420.1 CDS ksgA NC_004432.1 1355977 1356795 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(1355977..1356795) Mycoplasma penetrans HF-2 1041062 NP_758421.1 CDS MYPE10400 NC_004432.1 1356802 1357941 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC complement(1356802..1357941) Mycoplasma penetrans HF-2 1041064 NP_758422.1 CDS MYPE10410 NC_004432.1 1357973 1358308 R ribonuclease P protein component complement(1357973..1358308) Mycoplasma penetrans HF-2 1041063 NP_758423.1 CDS MYPE10420 NC_004432.1 1358320 1358463 R ribosomal protein L34 complement(1358320..1358463) Mycoplasma penetrans HF-2 1041081 MYPE20030 tRNA MYPE20030 NC_004432.1 146510 146584 D tRNA-Arg 146510..146584 Mycoplasma penetrans HF-2 1040754 MYPE20040 tRNA MYPE20040 NC_004432.1 163728 163802 D tRNA-Asn 163728..163802 Mycoplasma penetrans HF-2 1040771 MYPE20050 tRNA MYPE20050 NC_004432.1 163804 163880 D tRNA-Glu 163804..163880 Mycoplasma penetrans HF-2 1040772 MYPE20060 tRNA MYPE20060 NC_004432.1 163915 163990 D tRNA-Val 163915..163990 Mycoplasma penetrans HF-2 1040773 MYPE20070 tRNA MYPE20070 NC_004432.1 163992 164067 D tRNA-Thr 163992..164067 Mycoplasma penetrans HF-2 1040774 MYPE20080 tRNA MYPE20080 NC_004432.1 164099 164174 D tRNA-Lys 164099..164174 Mycoplasma penetrans HF-2 1040775 MYPE20090 tRNA MYPE20090 NC_004432.1 164176 164257 D tRNA-Leu 164176..164257 Mycoplasma penetrans HF-2 1040776 MYPE20100 tRNA MYPE20100 NC_004432.1 265648 265736 R tRNA-Ser complement(265648..265736) Mycoplasma penetrans HF-2 1040853 MYPE20110 tRNA MYPE20110 NC_004432.1 291269 291345 D tRNA-Ile 291269..291345 Mycoplasma penetrans HF-2 1040874 MYPE20120 tRNA MYPE20120 NC_004432.1 291348 291423 D tRNA-Ala 291348..291423 Mycoplasma penetrans HF-2 1040875 MYPE20130 tRNA MYPE20130 NC_004432.1 404621 404696 D tRNA-Arg 404621..404696 Mycoplasma penetrans HF-2 1040960 MYPE20140 tRNA MYPE20140 NC_004432.1 451338 451412 D tRNA-Cys 451338..451412 Mycoplasma penetrans HF-2 1040997 MYPE20150 tRNA MYPE20150 NC_004432.1 451418 451494 D tRNA-Arg 451418..451494 Mycoplasma penetrans HF-2 1040998 MYPE20160 tRNA MYPE20160 NC_004432.1 451527 451603 D tRNA-Pro 451527..451603 Mycoplasma penetrans HF-2 1040999 MYPE20170 tRNA MYPE20170 NC_004432.1 451608 451683 D tRNA-Met 451608..451683 Mycoplasma penetrans HF-2 1041000 MYPE20180 tRNA MYPE20180 NC_004432.1 451687 451763 D tRNA-Met 451687..451763 Mycoplasma penetrans HF-2 1041001 MYPE20190 tRNA MYPE20190 NC_004432.1 451830 451922 D tRNA-Ser 451830..451922 Mycoplasma penetrans HF-2 1041003 MYPE20200 tRNA MYPE20200 NC_004432.1 451950 452025 D tRNA-Met 451950..452025 Mycoplasma penetrans HF-2 1041004 MYPE20210 tRNA MYPE20210 NC_004432.1 452027 452102 D tRNA-Asp 452027..452102 Mycoplasma penetrans HF-2 1041005 MYPE20220 tRNA MYPE20220 NC_004432.1 452107 452182 D tRNA-Phe 452107..452182 Mycoplasma penetrans HF-2 1041006 MYPE20230 tRNA MYPE20230 NC_004432.1 479160 479244 D tRNA-Tyr 479160..479244 Mycoplasma penetrans HF-2 1041027 MYPE20240 tRNA MYPE20240 NC_004432.1 479249 479323 D tRNA-Gln 479249..479323 Mycoplasma penetrans HF-2 1041028 MYPE20250 tRNA MYPE20250 NC_004432.1 479369 479443 D tRNA-Lys 479369..479443 Mycoplasma penetrans HF-2 1041033 MYPE20260 tRNA MYPE20260 NC_004432.1 479468 479553 D tRNA-Leu 479468..479553 Mycoplasma penetrans HF-2 1041040 MYPE20270 tRNA MYPE20270 NC_004432.1 479560 479633 D tRNA-Gly 479560..479633 Mycoplasma penetrans HF-2 1041058 MYPE20280 tRNA MYPE20280 NC_004432.1 618264 618349 R tRNA-Leu complement(618264..618349) Mycoplasma penetrans HF-2 1041311 MYPE20290 tRNA MYPE20290 NC_004432.1 797808 797881 R tRNA-Gly complement(797808..797881) Mycoplasma penetrans HF-2 1041506 MYPE20300 tRNA MYPE20300 NC_004432.1 798954 799028 D tRNA-Trp 798954..799028 Mycoplasma penetrans HF-2 1041508 MYPE20310 tRNA MYPE20310 NC_004432.1 1104202 1104277 R tRNA-His complement(1104202..1104277) Mycoplasma penetrans HF-2 1041566 MYPE20000 rRNA MYPE20000 NC_004432.1 1233182 1233291 R 5S ribosomal RNA gene complement(1233182..1233291) Mycoplasma penetrans HF-2 1041299 MYPE20010 rRNA MYPE20010 NC_004432.1 1233379 1236243 R 23S ribosomal RNA gene complement(1233379..1236243) Mycoplasma penetrans HF-2 1041297 MYPE20020 rRNA MYPE20020 NC_004432.1 1236542 1237995 R 16S ribosomal RNA gene complement(1236542..1237995) Mycoplasma penetrans HF-2 1041308