-- dump date 20140619_162924 -- class Genbank::CDS -- table cds_note -- id note YP_002606443.1 identified by match to protein family HMM PF00308; match to protein family HMM PF08299; match to protein family HMM TIGR00362 YP_002606444.1 binds the polymerase to DNA and acts as a sliding clamp YP_002606445.1 negatively supercoils closed circular double-stranded DNA YP_002606446.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis YP_002606447.1 identified by match to protein family HMM PF00482 YP_002606448.1 identified by match to protein family HMM PF00437 YP_002606449.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958 YP_002606450.1 identified by glimmer; putative YP_002606451.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002606453.1 identified by glimmer; putative YP_002606454.1 identified by glimmer; putative YP_002606456.1 identified by match to protein family HMM PF07963; match to protein family HMM PF08334; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532 YP_002606457.1 identified by glimmer; putative YP_002606458.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002606459.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002606460.1 identified by match to protein family HMM PF02511 YP_002606461.1 identified by match to protein family HMM PF01627 YP_002606462.1 identified by match to protein family HMM PF01189 YP_002606466.1 identified by match to protein family HMM PF01813; match to protein family HMM TIGR00309 YP_002606467.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex YP_002606468.1 identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874 YP_002606469.1 identified by glimmer; putative YP_002606470.1 identified by match to protein family HMM PF01990 YP_002606471.1 identified by match to protein family HMM PF00137 YP_002606472.1 identified by match to protein family HMM PF01496 YP_002606473.1 identified by glimmer; putative YP_002606474.1 identified by glimmer; putative YP_002606475.1 identified by match to protein family HMM PF01121; match to protein family HMM TIGR00152 YP_002606477.1 identified by glimmer; putative YP_002606478.1 identified by match to protein family HMM PF02677 YP_002606479.1 identified by match to protein family HMM PF07977; match to protein family HMM TIGR01750 YP_002606480.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_002606481.1 identified by match to protein family HMM PF00004; match to protein family HMM PF06689; match to protein family HMM PF07724; match to protein family HMM TIGR00382 YP_002606482.1 functions in MreBCD complex in some organisms YP_002606485.1 identified by match to protein family HMM PF03883 YP_002606486.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037 YP_002606487.1 identified by glimmer; putative YP_002606488.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_002606489.1 identified by match to protein family HMM PF01207 YP_002606490.1 identified by glimmer; putative YP_002606491.1 identified by match to protein family HMM PF01258 YP_002606492.1 identified by match to protein family HMM PF02581 YP_002606493.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_002606494.1 identified by match to protein family HMM PF00459 YP_002606496.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_002606497.1 identified by match to protein family HMM PF00692; match to protein family HMM TIGR02274 YP_002606498.1 identified by glimmer; putative YP_002606499.1 identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531 YP_002606500.1 biotin carboxylase; biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA; catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_002606501.1 identified by glimmer; putative YP_002606502.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002606503.1 identified by match to protein family HMM PF00924 YP_002606504.1 identified by match to protein family HMM PF01832 YP_002606505.1 identified by match to protein family HMM PF01351 YP_002606507.1 identified by match to protein family HMM PF07690 YP_002606508.1 identified by match to protein family HMM PF01230 YP_002606509.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002606510.1 identified by match to protein family HMM PF01765; match to protein family HMM TIGR00496 YP_002606511.1 identified by match to protein family HMM PF01522 YP_002606512.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_002606513.1 identified by similarity to GB:AAD08298.1 YP_002606516.1 identified by match to protein family HMM PF01027 YP_002606517.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002606518.1 identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414 YP_002606519.1 identified by match to protein family HMM PF01094 YP_002606520.1 identified by match to protein family HMM PF00753; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002606521.1 identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229 YP_002606522.1 identified by match to protein family HMM PF02653 YP_002606523.1 identified by match to protein family HMM PF02653 YP_002606524.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_002606526.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002606527.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_002606528.1 identified by glimmer; putative YP_002606529.1 identified by match to protein family HMM PF02322 YP_002606530.1 identified by match to protein family HMM PF01654 YP_002606533.1 identified by match to protein family HMM PF00075 YP_002606534.1 identified by match to protein family HMM PF08668 YP_002606535.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_002606536.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_002606537.1 identified by match to protein family HMM PF07883 YP_002606538.1 identified by match to protein family HMM PF02621 YP_002606539.1 identified by match to protein family HMM PF02597 YP_002606540.1 identified by match to protein family HMM PF02391 YP_002606541.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_002606542.1 identified by glimmer; putative YP_002606544.1 identified by match to protein family HMM PF00278; match to protein family HMM TIGR01047 YP_002606545.1 identified by match to protein family HMM PF00563; match to protein family HMM PF02378 YP_002606546.1 identified by match to protein family HMM PF00563; match to protein family HMM PF02378 YP_002606547.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_002606548.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_002606549.1 catalyzes the formation of biotin from dethiobiotin and sulfur YP_002606550.1 identified by match to protein family HMM PF00999 YP_002606551.1 identified by match to protein family HMM PF01814 YP_002606552.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_002606554.1 identified by match to protein family HMM PF01381 YP_002606555.1 identified by match to protein family HMM PF00892 YP_002606556.1 identified by match to protein family HMM PF03480 YP_002606557.1 identified by match to protein family HMM PF04290 YP_002606558.1 identified by match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_002606559.1 identified by match to protein family HMM PF03746 YP_002606560.1 identified by match to protein family HMM PF02682 YP_002606561.1 identified by match to protein family HMM PF02626 YP_002606562.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_002606563.1 identified by match to protein family HMM PF00155 YP_002606564.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002606565.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR03304 YP_002606566.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002606567.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_002606568.1 identified by similarity to GB:CAA72361.1 YP_002606569.1 identified by match to protein family HMM PF00117; match to protein family HMM PF07685; match to protein family HMM TIGR01855 YP_002606570.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_002606571.1 identified by match to protein family HMM PF00072 YP_002606572.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_002606573.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241 YP_002606574.1 identified by match to protein family HMM PF02666; match to protein family HMM TIGR00164 YP_002606575.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 YP_002606576.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_002606577.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_002606578.1 identified by glimmer; putative YP_002606579.1 identified by match to protein family HMM PF00579; match to protein family HMM TIGR00233 YP_002606580.1 identified by glimmer; putative YP_002606581.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_002606582.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_002606585.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002606586.1 identified by glimmer; putative YP_002606588.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_002606589.1 identified by glimmer; putative YP_002606590.1 identified by match to protein family HMM PF02673; match to protein family HMM TIGR00753 YP_002606591.1 identified by match to protein family HMM PF03009 YP_002606592.1 identified by match to protein family HMM PF00929 YP_002606593.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_002606594.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002606595.1 identified by glimmer; putative YP_002606596.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002606597.1 identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023 YP_002606598.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_002606599.1 Modulates Rho-dependent transcription termination YP_002606600.1 binds directly to 23S ribosomal RNA YP_002606601.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_002606602.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_002606603.1 identified by match to protein family HMM PF00542; match to protein family HMM TIGR00855 YP_002606604.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_002606605.1 identified by match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000; match to protein family HMM TIGR02386; match to protein family HMM TIGR02388 YP_002606606.1 identified by match to protein family HMM PF00164; match to protein family HMM TIGR00981 YP_002606607.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_002606608.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002606609.1 identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR01334 YP_002606610.1 identified by glimmer; putative YP_002606612.1 identified by glimmer; putative YP_002606613.1 identified by match to protein family HMM PF04325 YP_002606614.1 identified by match to protein family HMM PF06354 YP_002606615.1 identified by glimmer; putative YP_002606617.1 identified by match to protein family HMM TIGR01256 YP_002606619.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141 YP_002606620.1 identified by match to protein family HMM PF00005 YP_002606621.1 identified by glimmer; putative YP_002606622.1 identified by match to protein family HMM PF00528 YP_002606623.1 identified by match to protein family HMM PF02562 YP_002606624.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide YP_002606625.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_002606626.1 identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023 YP_002606627.1 identified by match to protein family HMM PF02152; match to protein family HMM TIGR00526 YP_002606628.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002606629.1 identified by match to protein family HMM PF00037 YP_002606630.1 identified by match to protein family HMM PF02541 YP_002606632.1 identified by match to protein family HMM PF01266 YP_002606633.1 identified by match to protein family HMM PF00005 YP_002606634.1 identified by match to protein family HMM PF00005 YP_002606635.1 identified by match to protein family HMM PF00929 YP_002606636.1 identified by glimmer; putative YP_002606639.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836 YP_002606640.1 identified by match to protein family HMM PF00543 YP_002606641.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002606642.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002606644.1 identified by glimmer; putative YP_002606648.1 identified by match to protein family HMM PF03435 YP_002606649.1 identified by match to protein family HMM PF03435 YP_002606650.1 identified by match to protein family HMM PF00015; match to protein family HMM TIGR00229 YP_002606651.1 identified by match to protein family HMM PF00795 YP_002606652.1 identified by match to protein family HMM PF00497; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002606653.1 identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163 YP_002606655.1 identified by glimmer; putative YP_002606656.1 identified by match to protein family HMM PF00697 YP_002606657.1 identified by match to protein family HMM PF05670 YP_002606659.1 identified by match to protein family HMM PF01148 YP_002606660.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_002606661.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_002606662.1 identified by match to protein family HMM PF02386 YP_002606663.1 identified by match to protein family HMM PF02254 YP_002606664.1 identified by match to protein family HMM PF01558; match to protein family HMM TIGR02175 YP_002606665.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR02179 YP_002606666.1 identified by match to protein family HMM PF01855 YP_002606667.1 identified by match to protein family HMM PF02775 YP_002606668.1 identified by match to protein family HMM PF00654 YP_002606669.1 identified by match to protein family HMM PF01544 YP_002606670.1 identified by glimmer; putative YP_002606671.1 identified by match to protein family HMM PF00884; match to protein family HMM PF08019 YP_002606672.1 identified by match to protein family HMM PF01219 YP_002606673.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002606674.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002606675.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_002606676.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_002606677.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_002606678.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_002606679.1 identified by match to protein family HMM PF00027 YP_002606680.1 identified by match to protein family HMM PF05430 YP_002606681.1 identified by match to protein family HMM PF03150 YP_002606682.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002606683.1 identified by match to protein family HMM PF02021 YP_002606684.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051 YP_002606685.1 identified by match to protein family HMM PF03486 YP_002606686.1 identified by glimmer; putative YP_002606688.1 identified by glimmer; putative YP_002606689.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_002606691.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_002606693.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_002606694.1 identified by match to protein family HMM PF04332 YP_002606695.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_002606696.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus YP_002606697.1 identified by glimmer; putative YP_002606698.1 identified by match to protein family HMM PF02642 YP_002606699.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990 YP_002606700.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_002606701.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_002606704.1 identified by match to protein family HMM PF01202 YP_002606705.1 identified by glimmer; putative YP_002606706.1 identified by match to protein family HMM PF03167 YP_002606707.1 identified by glimmer; putative YP_002606708.1 identified by match to protein family HMM PF00551 YP_002606709.1 identified by glimmer; putative YP_002606710.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002606711.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002606712.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_002606713.1 identified by match to protein family HMM PF01343 YP_002606714.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_002606715.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002606716.1 identified by match to protein family HMM PF00550; match to protein family HMM TIGR00517 YP_002606717.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_002606718.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_002606719.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_002606720.1 identified by glimmer; putative YP_002606721.1 identified by match to protein family HMM PF01925 YP_002606723.1 One of three proteins involved in switching the direction of the flagellar rotation YP_002606725.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_002606726.1 identified by glimmer; putative YP_002606727.1 identified by glimmer; putative YP_002606728.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002606729.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM PF08279 YP_002606731.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975 YP_002606732.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_002606733.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_002606734.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00972 YP_002606735.1 identified by match to protein family HMM PF01384 YP_002606736.1 identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460 YP_002606737.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon YP_002606738.1 identified by match to protein family HMM PF01656 YP_002606739.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_002606740.1 identified by match to protein family HMM PF00430 YP_002606741.1 identified by match to protein family HMM PF00430 YP_002606742.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The delta subunit is part of the catalytic core of the ATP synthase complex YP_002606743.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_002606744.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_002606745.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_002606746.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_002606747.1 identified by match to protein family HMM PF01618 YP_002606748.1 identified by match to protein family HMM PF02472 YP_002606749.1 identified by glimmer; putative YP_002606750.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA YP_002606751.1 identified by match to protein family HMM PF00691 YP_002606752.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002606753.1 identified by match to protein family HMM PF00254 YP_002606754.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_002606755.1 identified by match to protein family HMM PF00795 YP_002606756.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_002606757.1 identified by glimmer; putative YP_002606758.1 identified by match to protein family HMM PF01171 YP_002606759.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_002606760.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_002606761.1 identified by match to protein family HMM PF01205 YP_002606762.1 identified by match to protein family HMM PF00445 YP_002606763.1 identified by match to protein family HMM PF00324; match to protein family HMM PF03845 YP_002606764.1 identified by match to protein family HMM PF04608 YP_002606766.1 identified by match to protein family HMM PF00072 YP_002606767.1 bifunctional enzyme involved in formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate and 2-C-methyl-D-erythritol 2,4-cyclodiphosphate and CMP from 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; binds divalent cations YP_002606768.1 identified by match to protein family HMM PF00188 YP_002606769.1 identified by match to protein family HMM PF01964; match to protein family HMM TIGR00190 YP_002606772.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_002606776.1 identified by match to protein family HMM PF00580 YP_002606777.1 identified by glimmer; putative YP_002606778.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_002606779.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002606780.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_002606781.1 catalyzes the formation of dUMP from dUTP YP_002606782.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_002606783.1 identified by match to protein family HMM PF00149 YP_002606784.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01584 YP_002606785.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895 YP_002606786.1 identified by match to protein family HMM PF01584 YP_002606787.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis YP_002606788.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_002606789.1 identified by glimmer; putative YP_002606790.1 identified by match to protein family HMM PF00149 YP_002606791.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730 YP_002606792.1 identified by match to protein family HMM PF01863 YP_002606793.1 identified by match to protein family HMM PF02646 YP_002606794.1 identified by glimmer; putative YP_002606795.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_002606796.1 identified by glimmer; putative YP_002606798.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_002606799.1 identified by glimmer; putative YP_002606801.1 identified by match to protein family HMM PF01925 YP_002606803.1 identified by match to protein family HMM PF00873 YP_002606804.1 identified by match to protein family HMM TIGR01730 YP_002606805.1 identified by glimmer; putative YP_002606806.1 identified by match to protein family HMM PF00440 YP_002606807.1 identified by glimmer; putative YP_002606808.1 identified by match to protein family HMM PF04305 YP_002606809.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_002606810.1 identified by match to protein family HMM PF02146 YP_002606811.1 identified by glimmer; putative YP_002606812.1 identified by match to protein family HMM PF03674 YP_002606813.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002606814.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002606815.1 identified by match to protein family HMM PF01022 YP_002606816.1 identified by match to protein family HMM PF03595; match to protein family HMM TIGR00816 YP_002606820.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836 YP_002606821.1 identified by match to protein family HMM PF00543 YP_002606823.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis YP_002606824.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF04023 YP_002606825.1 identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; match to protein family HMM TIGR00650 YP_002606826.1 Catalyzes the rate-limiting step in dNTP synthesis YP_002606827.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_002606828.1 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149 YP_002606829.1 identified by glimmer; putative YP_002606831.1 identified by match to protein family HMM PF01557 YP_002606832.1 identified by match to protein family HMM PF04055 YP_002606834.1 identified by match to protein family HMM TIGR00703 YP_002606836.1 identified by match to protein family HMM PF02579 YP_002606837.1 identified by match to protein family HMM PF02579 YP_002606838.1 identified by match to protein family HMM PF01451 YP_002606839.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427 YP_002606840.1 identified by match to protein family HMM PF00691; match to protein family HMM PF02412 YP_002606842.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_002606843.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_002606844.1 identified by match to protein family HMM PF00571; match to protein family HMM PF00990 YP_002606845.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_002606846.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02504; match to protein family HMM TIGR00182 YP_002606847.1 identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031 YP_002606849.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002606850.1 identified by match to protein family HMM PF00037 YP_002606851.1 identified by glimmer; putative YP_002606852.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002606853.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002606854.1 identified by match to protein family HMM PF00092 YP_002606857.1 identified by match to protein family HMM PF07726; match to protein family HMM PF07728 YP_002606858.1 identified by match to protein family HMM PF05433 YP_002606860.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002606862.1 identified by match to protein family HMM PF00072 YP_002606863.1 identified by match to protein family HMM PF07605 YP_002606864.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_002606865.1 identified by match to protein family HMM PF03190 YP_002606867.1 identified by match to protein family HMM PF03600 YP_002606868.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 YP_002606869.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_002606870.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_002606871.1 identified by match to protein family HMM PF00005 YP_002606872.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus YP_002606875.1 identified by match to protein family HMM PF00625 YP_002606876.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_002606877.1 identified by match to protein family HMM PF04463 YP_002606878.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090 YP_002606879.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482 YP_002606880.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_002606881.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_002606882.1 identified by match to protein family HMM PF00121; match to protein family HMM TIGR00419 YP_002606883.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_002606885.1 identified by match to protein family HMM PF00027 YP_002606886.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_002606887.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002606890.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032 YP_002606891.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_002606892.1 identified by glimmer; putative YP_002606893.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_002606895.1 identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758 YP_002606896.1 identified by match to protein family HMM PF00924 YP_002606897.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_002606898.1 identified by match to protein family HMM PF02080 YP_002606899.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_002606900.1 identified by match to protein family HMM PF07238 YP_002606902.1 identified by match to protein family HMM PF03602 YP_002606904.1 identified by match to protein family HMM PF03646 YP_002606905.1 identified by match to protein family HMM PF02465; match to protein family HMM PF07195; match to protein family HMM PF07196 YP_002606906.1 flagellin specific chaperone YP_002606908.1 identified by glimmer; putative YP_002606909.1 identified by match to protein family HMM PF03595 YP_002606910.1 identified by match to protein family HMM PF00581 YP_002606911.1 catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis YP_002606912.1 identified by match to protein family HMM PF02599; match to protein family HMM TIGR00202 YP_002606913.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_002606914.1 identified by match to protein family HMM PF00580 YP_002606915.1 identified by match to protein family HMM PF00126 YP_002606917.1 identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR02290 YP_002606919.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_002606920.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002606921.1 catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine YP_002606922.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_002606923.1 identified by match to protein family HMM PF08003; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002606925.1 identified by match to protein family HMM PF01546 YP_002606926.1 identified by match to protein family HMM PF00484 YP_002606927.1 identified by match to protein family HMM PF01520 YP_002606928.1 identified by match to protein family HMM PF03060 YP_002606929.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_002606930.1 identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_002606931.1 identified by match to protein family HMM PF01192 YP_002606932.1 Catalyzes the phosphorylation of UMP to UDP YP_002606933.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_002606934.1 identified by match to protein family HMM PF00041 YP_002606935.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_002606936.1 identified by match to protein family HMM PF00005 YP_002606938.1 identified by match to protein family HMM PF01551 YP_002606939.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_002606940.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_002606941.1 identified by match to protein family HMM PF02604; match to protein family HMM TIGR01552 YP_002606942.1 identified by match to protein family HMM PF06769; match to protein family HMM TIGR02116 YP_002606946.1 identified by match to protein family HMM PF04055 YP_002606950.1 identified by match to protein family HMM PF00156 YP_002606951.1 identified by glimmer; putative YP_002606952.1 identified by match to protein family HMM PF01098 YP_002606953.1 identified by match to protein family HMM PF00015 YP_002606954.1 identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229 YP_002606957.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_002606959.1 identified by match to protein family HMM PF00925; match to protein family HMM TIGR00505 YP_002606960.1 identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00658 YP_002606962.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002606963.1 identified by match to protein family HMM PF01475 YP_002606965.1 identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064 YP_002606966.1 identified by similarity to GB:ABB44798.1 YP_002606968.1 identified by match to protein family HMM PF00037 YP_002606969.1 identified by match to protein family HMM PF03892 YP_002606970.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR02163 YP_002606971.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR00397 YP_002606972.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC YP_002606973.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002606974.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002606977.1 identified by match to protein family HMM PF01578 YP_002606978.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_002606979.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_002606980.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_002606981.1 identified by match to protein family HMM PF01379; match to protein family HMM PF03900; match to protein family HMM TIGR00212 YP_002606982.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_002606983.1 identified by glimmer; putative YP_002606984.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383 YP_002606985.1 identified by glimmer; putative YP_002606986.1 identified by match to protein family HMM PF01155; match to protein family HMM TIGR00100 YP_002606987.1 identified by match to protein family HMM PF00440 YP_002606988.1 identified by match to protein family HMM PF01058 YP_002606989.1 identified by match to protein family HMM PF00374 YP_002606990.1 identified by match to protein family HMM PF01058; match to protein family HMM PF08425; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409 YP_002606991.1 identified by match to protein family HMM PF00374 YP_002606992.1 identified by match to protein family HMM PF01292; match to protein family HMM TIGR02125 YP_002606993.1 identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140; match to protein family HMM TIGR00141 YP_002606995.1 identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143 YP_002606996.1 identified by glimmer; putative YP_002606998.1 identified by match to protein family HMM PF00892 YP_002606999.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002607000.1 identified by match to protein family HMM PF00497 YP_002607001.1 identified by match to protein family HMM PF00005 YP_002607002.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002607003.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002607004.1 identified by match to protein family HMM PF00497 YP_002607005.1 identified by glimmer; putative YP_002607006.1 identified by match to protein family HMM PF00669 YP_002607007.1 identified by match to protein family HMM PF00005 YP_002607009.1 identified by glimmer; putative YP_002607010.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_002607012.1 identified by match to protein family HMM PF08242 YP_002607013.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002607014.1 identified by match to protein family HMM PF00583 YP_002607015.1 identified by match to protein family HMM PF05728 YP_002607017.1 identified by match to protein family HMM PF00005 YP_002607018.1 identified by match to protein family HMM PF02687 YP_002607019.1 identified by glimmer; putative YP_002607021.1 identified by glimmer; putative YP_002607022.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB YP_002607023.1 identified by match to protein family HMM PF02617 YP_002607024.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_002607025.1 identified by match to protein family HMM PF03588; match to protein family HMM TIGR00667 YP_002607026.1 catalyzes the formation of D-fructose 6-phosphate from D-glucose 6-phosphate YP_002607027.1 identified by match to protein family HMM PF00717 YP_002607028.1 identified by match to protein family HMM PF00817 YP_002607029.1 makes up the distal portion of the flagellar basal body rod YP_002607030.1 identified by match to protein family HMM PF00460 YP_002607031.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria YP_002607032.1 identified by match to protein family HMM PF02540; match to protein family HMM PF03054; match to protein family HMM PF06508; match to protein family HMM TIGR00552 YP_002607033.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate YP_002607036.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_002607038.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_002607039.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_002607040.1 identified by match to protein family HMM PF08241 YP_002607041.1 identified by match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_002607042.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_002607043.1 identified by match to protein family HMM PF00639 YP_002607044.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate YP_002607046.1 identified by match to protein family HMM PF00361 YP_002607047.1 identified by match to protein family HMM PF00146 YP_002607048.1 identified by match to protein family HMM PF01058 YP_002607049.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002607050.1 identified by match to protein family HMM PF00346 YP_002607051.1 identified by match to protein family HMM PF00037 YP_002607052.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002607054.1 identified by glimmer; putative YP_002607055.1 identified by match to protein family HMM PF03692 YP_002607056.1 identified by match to protein family HMM PF06167 YP_002607057.1 identified by match to protein family HMM PF02537; match to protein family HMM TIGR00494 YP_002607058.1 identified by match to protein family HMM PF01553 YP_002607060.1 identified by match to protein family HMM PF01551 YP_002607061.1 identified by match to protein family HMM PF07685; match to protein family HMM TIGR01737 YP_002607062.1 identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302 YP_002607063.1 identified by match to protein family HMM PF01259; match to protein family HMM TIGR00081 YP_002607064.1 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 YP_002607065.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02861 YP_002607066.1 identified by glimmer; putative YP_002607067.1 identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229 YP_002607068.1 identified by match to protein family HMM PF00015 YP_002607069.1 charges one glutamine molecule and pairs it with tRNA(Gln) YP_002607070.1 identified by match to protein family HMM PF02325 YP_002607071.1 identified by match to protein family HMM PF01464 YP_002607073.1 identified by glimmer; putative YP_002607074.1 identified by glimmer; putative YP_002607076.1 negatively supercoils closed circular double-stranded DNA YP_002607077.1 identified by match to protein family HMM PF04164 YP_002607078.1 identified by glimmer; putative YP_002607079.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF07728 YP_002607080.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_002607081.1 identified by match to protein family HMM PF03350 YP_002607082.1 identified by match to protein family HMM PF04055 YP_002607084.1 identified by glimmer; putative YP_002607086.1 identified by match to protein family HMM PF03150 YP_002607087.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002607088.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_002607089.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002607090.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659 YP_002607091.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002607092.1 identified by match to protein family HMM PF00290; match to protein family HMM TIGR00262 YP_002607093.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_002607094.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_002607095.1 identified by match to protein family HMM PF01594 YP_002607097.1 identified by match to protein family HMM PF01025 YP_002607098.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_002607099.1 identified by match to protein family HMM PF00924 YP_002607100.1 identified by match to protein family HMM PF00654 YP_002607101.1 identified by glimmer; putative YP_002607102.1 identified by match to protein family HMM PF02580; match to protein family HMM TIGR00256 YP_002607103.1 identified by match to protein family HMM PF00762; match to protein family HMM TIGR00109 YP_002607104.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate YP_002607105.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199 YP_002607106.1 identified by match to protein family HMM PF03976 YP_002607107.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_002607109.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002607110.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_002607111.1 identified by match to protein family HMM TIGR02122 YP_002607112.1 identified by match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR02123 YP_002607113.1 identified by glimmer; putative YP_002607115.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784 YP_002607116.1 identified by match to protein family HMM PF01551; match to protein family HMM PF03253 YP_002607119.1 identified by glimmer; putative YP_002607120.1 identified by match to protein family HMM PF02219 YP_002607121.1 identified by match to protein family HMM PF00126 YP_002607122.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_002607124.1 identified by match to protein family HMM PF08442 YP_002607125.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00549 YP_002607126.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002607127.1 identified by match to protein family HMM PF01435 YP_002607128.1 identified by match to protein family HMM PF00106 YP_002607129.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536 YP_002607130.1 identified by match to protein family HMM PF07690 YP_002607131.1 identified by glimmer; putative YP_002607132.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427 YP_002607133.1 identified by match to protein family HMM PF00488; match to protein family HMM PF01624; match to protein family HMM PF05192 YP_002607135.1 identified by match to protein family HMM PF01497 YP_002607136.1 identified by match to protein family HMM PF00950; match to protein family HMM PF01032 YP_002607137.1 identified by match to protein family HMM PF00005 YP_002607138.1 identified by glimmer; putative YP_002607139.1 identified by match to protein family HMM PF00005 YP_002607140.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073 YP_002607141.1 identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074 YP_002607142.1 identified by match to protein family HMM PF01924; match to protein family HMM TIGR00075 YP_002607143.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124 YP_002607144.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone YP_002607145.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683 YP_002607146.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_002607147.1 identified by glimmer; putative YP_002607149.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002607150.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229 YP_002607152.1 identified by match to protein family HMM PF01058 YP_002607153.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00329; match to protein family HMM PF00346 YP_002607154.1 identified by match to protein family HMM PF00361 YP_002607157.1 identified by match to protein family HMM PF00361 YP_002607158.1 identified by match to protein family HMM PF03328 YP_002607160.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_002607161.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_002607162.1 identified by match to protein family HMM PF02163 YP_002607163.1 identified by match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; match to protein family HMM TIGR02349 YP_002607164.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_002607165.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002607166.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03601 YP_002607167.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002607168.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521 YP_002607169.1 identified by match to protein family HMM PF00391; match to protein family HMM PF01326; match to protein family HMM PF02896; match to protein family HMM TIGR01418 YP_002607171.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01647 YP_002607172.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_002607173.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364 YP_002607174.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_002607175.1 identified by match to protein family HMM PF00676 YP_002607176.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_002607177.1 identified by match to protein family HMM PF02629 YP_002607178.1 identified by match to protein family HMM PF00365 YP_002607179.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_002607181.1 involved in de novo purine biosynthesis YP_002607182.1 identified by match to protein family HMM PF07690 YP_002607186.1 identified by match to protein family HMM PF00348 YP_002607187.1 identified by match to protein family HMM PF01656 YP_002607188.1 identified by match to protein family HMM PF03976 YP_002607189.1 identified by match to protein family HMM PF00591; match to protein family HMM TIGR01245 YP_002607190.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_002607191.1 identified by match to protein family HMM PF00005 YP_002607192.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_002607193.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043 YP_002607194.1 identified by match to protein family HMM PF02568; match to protein family HMM PF06508; match to protein family HMM TIGR00364 YP_002607195.1 identified by match to protein family HMM PF00696; match to protein family HMM TIGR00761 YP_002607196.1 identified by match to protein family HMM PF00999 YP_002607197.1 identified by match to protein family HMM PF02623 YP_002607198.1 identified by match to protein family HMM PF00580 YP_002607199.1 identified by match to protein family HMM PF07690 YP_002607200.1 identified by match to protein family HMM PF09335 YP_002607202.1 identified by match to protein family HMM PF03595 YP_002607205.1 identified by match to protein family HMM PF02001 YP_002607208.1 identified by match to protein family HMM PF02146 YP_002607209.1 identified by match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_002607210.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_002607211.1 identified by match to protein family HMM PF02541 YP_002607212.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine resistant; also known as acetolactate synthase 3 large subunit YP_002607213.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_002607214.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_002607215.1 identified by match to protein family HMM PF00266; match to protein family HMM PF00282; match to protein family HMM PF01212 YP_002607216.1 identified by match to protein family HMM PF01106; match to protein family HMM PF01592; match to protein family HMM PF04324 YP_002607217.1 identified by match to protein family HMM PF00563 YP_002607218.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_002607220.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_002607221.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_002607222.1 identified by match to protein family HMM PF09335 YP_002607223.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002607224.1 identified by match to protein family HMM PF07876 YP_002607225.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002607226.1 identified by match to protein family HMM PF03976 YP_002607227.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF08376 YP_002607228.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172 YP_002607229.1 identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041 YP_002607230.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01510 YP_002607231.1 identified by match to protein family HMM PF02441; match to protein family HMM TIGR00421 YP_002607232.1 identified by match to protein family HMM TIGR03170 YP_002607233.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763 YP_002607235.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_002607236.1 identified by match to protein family HMM PF02623 YP_002607237.1 identified by match to protein family HMM PF03807; match to protein family HMM TIGR00112 YP_002607238.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002607239.1 identified by match to protein family HMM TIGR02532 YP_002607240.1 identified by glimmer; putative YP_002607241.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_002607242.1 identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030 YP_002607244.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278 YP_002607245.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_002607247.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_002607250.1 identified by match to protein family HMM PF01875 YP_002607251.1 identified by match to protein family HMM PF04055 YP_002607253.1 identified by glimmer; putative YP_002607254.1 identified by glimmer; putative YP_002607255.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_002607256.1 identified by match to protein family HMM PF06271 YP_002607257.1 identified by match to protein family HMM PF04453 YP_002607258.1 identified by match to protein family HMM PF02470 YP_002607259.1 identified by match to protein family HMM PF00226 YP_002607261.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01138; match to protein family HMM PF03726 YP_002607262.1 identified by match to protein family HMM PF00155 YP_002607263.1 identified by glimmer; putative YP_002607264.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_002607265.1 identified by glimmer; putative YP_002607267.1 identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035 YP_002607268.1 catalyzes branch migration in Holliday junction intermediates YP_002607269.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_002607271.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_002607273.1 identified by match to protein family HMM PF00873 YP_002607274.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579 YP_002607275.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF07728 YP_002607277.1 identified by match to protein family HMM PF01699 YP_002607278.1 identified by match to protein family HMM PF03480; match to protein family HMM TIGR01409 YP_002607279.1 identified by match to protein family HMM PF00899 YP_002607280.1 identified by match to protein family HMM PF02624; match to protein family HMM TIGR00702 YP_002607281.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_002607282.1 identified by glimmer; putative YP_002607283.1 identified by match to protein family HMM PF00300; match to protein family HMM TIGR01258 YP_002607284.1 identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245 YP_002607285.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_002607286.1 identified by glimmer; putative YP_002607287.1 identified by match to protein family HMM PF00312; match to protein family HMM TIGR00952 YP_002607288.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002607289.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_002607290.1 identified by match to protein family HMM PF00771; match to protein family HMM TIGR01398 YP_002607291.1 identified by match to protein family HMM PF02390; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR00740 YP_002607292.1 identified by match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM TIGR01326 YP_002607293.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002607294.1 identified by match to protein family HMM PF00561; match to protein family HMM TIGR01392 YP_002607296.1 identified by match to protein family HMM PF00795 YP_002607297.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423 YP_002607298.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002607299.1 identified by match to protein family HMM PF02674 YP_002607300.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_002607301.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_002607303.1 identified by match to protein family HMM PF05036 YP_002607304.1 identified by match to protein family HMM PF00425; match to protein family HMM PF04715 YP_002607305.1 identified by match to protein family HMM PF01740 YP_002607306.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_002607307.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_002607308.1 identified by match to protein family HMM PF01261; match to protein family HMM TIGR00587 YP_002607309.1 identified by match to protein family HMM PF01230 YP_002607310.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_002607311.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_002607312.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_002607313.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_002607314.1 identified by match to protein family HMM PF00575 YP_002607315.1 identified by glimmer; putative YP_002607316.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_002607317.1 identified by match to protein family HMM PF01132; match to protein family HMM PF08207; match to protein family HMM PF09285; match to protein family HMM TIGR00038 YP_002607318.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01090 YP_002607319.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_002607321.1 identified by match to protein family HMM PF00883; match to protein family HMM PF02789 YP_002607322.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_002607325.1 identified by match to protein family HMM PF02810 YP_002607326.1 identified by glimmer; putative YP_002607328.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_002607329.1 identified by match to protein family HMM PF01266 YP_002607330.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_002607331.1 identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357 YP_002607332.1 identified by match to protein family HMM PF05057 YP_002607333.1 identified by match to protein family HMM PF01661 YP_002607334.1 identified by glimmer; putative YP_002607335.1 identified by match to protein family HMM PF01910; match to protein family HMM TIGR00106 YP_002607336.1 identified by match to protein family HMM PF00005 YP_002607338.1 identified by match to protein family HMM PF01230 YP_002607339.1 identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686 YP_002607341.1 identified by glimmer; putative YP_002607342.1 identified by match to protein family HMM PF01904 YP_002607343.1 identified by match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_002607344.1 identified by match to protein family HMM PF04290 YP_002607345.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245 YP_002607346.1 identified by match to protein family HMM PF00708 YP_002607347.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_002607348.1 identified by match to protein family HMM PF01330; match to protein family HMM PF07499; match to protein family HMM TIGR00084 YP_002607350.1 identified by glimmer; putative YP_002607351.1 identified by match to protein family HMM PF03023 YP_002607352.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_002607354.1 identified by match to protein family HMM PF01180; match to protein family HMM TIGR01036 YP_002607355.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_002607356.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_002607358.1 identified by match to protein family HMM PF01555 YP_002607360.1 identified by glimmer; putative YP_002607361.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_002607362.1 identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_002607363.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_002607364.1 Acts on the hydroxyl group at position 7 of the steroid frame YP_002607365.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_002607366.1 identified by match to protein family HMM PF02687 YP_002607367.1 identified by match to protein family HMM PF03548 YP_002607368.1 identified by match to protein family HMM PF00459 YP_002607369.1 identified by match to protein family HMM PF01435; match to protein family HMM PF06509 YP_002607371.1 identified by match to protein family HMM PF03092 YP_002607372.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate YP_002607374.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_002607375.1 identified by match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065 YP_002607376.1 identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056 YP_002607377.1 identified by match to protein family HMM PF03748 YP_002607378.1 identified by match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556 YP_002607380.1 identified by glimmer; putative YP_002607381.1 identified by match to protein family HMM TIGR00229 YP_002607382.1 identified by match to protein family HMM PF02602 YP_002607383.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_002607385.1 identified by match to protein family HMM PF00890 YP_002607387.1 identified by glimmer; putative YP_002607388.1 identified by match to protein family HMM PF01842 YP_002607390.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_002607391.1 identified by match to protein family HMM PF01558 YP_002607392.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02775 YP_002607394.1 identified by match to protein family HMM PF00474 YP_002607395.1 identified by glimmer; putative YP_002607396.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_002607397.1 identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481 YP_002607399.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_002607405.1 identified by match to protein family HMM PF00005 YP_002607406.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765 YP_002607407.1 identified by match to protein family HMM PF00374 YP_002607408.1 identified by match to protein family HMM PF01058; match to protein family HMM PF08425; match to protein family HMM TIGR00391 YP_002607409.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002607410.1 identified by match to protein family HMM PF00719 YP_002607411.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_002607412.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002607413.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002607414.1 identified by match to protein family HMM PF04341 YP_002607415.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake YP_002607416.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03445 YP_002607417.1 identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573 YP_002607418.1 identified by match to protein family HMM PF04277; match to protein family HMM TIGR01195 YP_002607419.1 identified by match to protein family HMM PF00364; match to protein family HMM PF00682 YP_002607420.1 identified by match to protein family HMM PF03977; match to protein family HMM TIGR01109 YP_002607421.1 identified by glimmer; putative YP_002607423.1 identified by match to protein family HMM PF06429 YP_002607424.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_002607425.1 identified by match to protein family HMM PF02566 YP_002607426.1 identified by match to protein family HMM PF08238 YP_002607427.1 identified by match to protein family HMM PF00149 YP_002607428.1 identified by glimmer; putative YP_002607429.1 identified by glimmer; putative YP_002607430.1 identified by match to protein family HMM PF01810 YP_002607431.1 identified by match to protein family HMM PF00155 YP_002607432.1 identified by match to protein family HMM PF00137; match to protein family HMM TIGR01260 YP_002607433.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002607434.1 identified by match to protein family HMM PF07693 YP_002607435.1 identified by glimmer; putative YP_002607436.1 identified by glimmer; putative YP_002607438.1 identified by glimmer; putative YP_002607439.1 identified by match to protein family HMM PF02463 YP_002607440.1 identified by match to protein family HMM PF01513 YP_002607441.1 identified by match to protein family HMM PF00210; match to protein family HMM PF02915 YP_002607442.1 identified by glimmer; putative YP_002607443.1 identified by match to protein family HMM PF00924 YP_002607444.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_002607445.1 identified by match to protein family HMM PF04023 YP_002607446.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_002607447.1 identified by match to protein family HMM PF00994 YP_002607448.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002607449.1 identified by glimmer; putative YP_002607450.1 identified by match to protein family HMM PF02754 YP_002607451.1 identified by match to protein family HMM PF00111; match to protein family HMM TIGR00384 YP_002607452.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01812 YP_002607453.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01318 YP_002607454.1 identified by match to protein family HMM PF01155 YP_002607455.1 identified by match to protein family HMM PF00037 YP_002607456.1 identified by match to protein family HMM PF00346 YP_002607457.1 identified by match to protein family HMM PF00329 YP_002607458.1 identified by match to protein family HMM PF00037 YP_002607459.1 identified by match to protein family HMM PF01058 YP_002607460.1 identified by match to protein family HMM PF00146 YP_002607461.1 identified by match to protein family HMM PF00361 YP_002607462.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002607464.1 identified by match to protein family HMM PF00583 YP_002607465.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_002607466.1 identified by match to protein family HMM PF01479 YP_002607467.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_002607468.1 identified by glimmer; putative YP_002607469.1 identified by match to protein family HMM PF00156 YP_002607470.1 identified by match to protein family HMM PF04116 YP_002607471.1 identified by match to protein family HMM PF00270; match to protein family HMM PF01131; match to protein family HMM PF01751; match to protein family HMM TIGR01054 YP_002607472.1 identified by match to protein family HMM PF00654 YP_002607473.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_002607474.1 identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481 YP_002607475.1 identified by match to protein family HMM PF00027 YP_002607476.1 identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148 YP_002607477.1 identified by glimmer; putative YP_002607478.1 identified by match to protein family HMM PF00300 YP_002607479.1 identified by match to protein family HMM PF03602 YP_002607480.1 identified by match to protein family HMM TIGR00376 YP_002607481.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by similarity to GB:AAD08401.1 YP_002607482.1 unwinds double stranded DNA YP_002607483.1 identified by glimmer; putative YP_002607484.1 identified by glimmer; putative YP_002607485.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_002607486.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478 YP_002607487.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_002607488.1 identified by match to protein family HMM PF02254 YP_002607489.1 identified by match to protein family HMM PF00520; match to protein family HMM PF02254; match to protein family HMM PF07885 YP_002607490.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002607491.1 identified by match to protein family HMM PF02629 YP_002607492.1 identified by match to protein family HMM PF00216 YP_002607493.1 identified by glimmer; putative YP_002607494.1 identified by match to protein family HMM PF01625; match to protein family HMM TIGR00401 YP_002607495.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_002607496.1 binds to and inhibits the function of flagella specific ATPase FliI YP_002607497.1 One of three proteins involved in switching the direction of the flagellar rotation YP_002607498.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_002607499.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_002607500.1 identified by match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM TIGR01807 YP_002607501.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460 YP_002607502.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_002607503.1 identified by match to protein family HMM PF03739 YP_002607504.1 identified by match to protein family HMM PF01195; match to protein family HMM TIGR00447 YP_002607505.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_002607506.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420 YP_002607507.1 identified by match to protein family HMM PF00923; match to protein family HMM TIGR00876 YP_002607508.1 identified by match to protein family HMM PF00702; match to protein family HMM PF06888; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488 YP_002607509.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411 YP_002607510.1 identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945 YP_002607511.1 identified by match to protein family HMM PF04458 YP_002607512.1 identified by match to protein family HMM PF00571; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002607513.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_002607514.1 identified by match to protein family HMM PF01142; match to protein family HMM TIGR00094 YP_002607515.1 identified by glimmer; putative YP_002607516.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP YP_002607517.1 identified by match to protein family HMM PF08447; match to protein family HMM TIGR00229 YP_002607518.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM TIGR00384 YP_002607520.1 identified by match to protein family HMM PF02754 YP_002607521.1 identified by match to protein family HMM PF00111; match to protein family HMM TIGR00384 YP_002607522.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM PF07992; match to protein family HMM TIGR01812 YP_002607524.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_002607525.1 identified by glimmer; putative YP_002607526.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740 YP_002607527.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_002607528.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002607529.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002607530.1 identified by glimmer; putative YP_002607531.1 identified by glimmer; putative YP_002607532.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_002607533.1 identified by glimmer; putative YP_002607535.1 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange YP_002607536.1 identified by match to protein family HMM PF00160 YP_002607537.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_002607538.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_002607539.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420 YP_002607540.1 identified by match to protein family HMM PF02686; match to protein family HMM TIGR00135 YP_002607541.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR00713 YP_002607543.1 identified by match to protein family HMM PF00482 YP_002607544.1 identified by match to protein family HMM PF00437; match to protein family HMM PF05157 YP_002607545.1 identified by glimmer; putative YP_002607546.1 identified by match to protein family HMM PF01450; match to protein family HMM PF02629; match to protein family HMM PF07991; match to protein family HMM TIGR00465 YP_002607547.1 identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968 YP_002607548.1 identified by match to protein family HMM PF03776; match to protein family HMM TIGR01215 YP_002607549.1 identified by match to protein family HMM PF04748 YP_002607550.1 identified by match to protein family HMM PF02481 YP_002607552.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_002607553.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002607554.1 identified by match to protein family HMM PF02558; match to protein family HMM PF08546; match to protein family HMM TIGR00745 YP_002607555.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs YP_002607556.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_002607557.1 identified by match to protein family HMM PF00691 YP_002607558.1 identified by match to protein family HMM PF01618 YP_002607559.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_002607560.1 identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521 YP_002607562.1 identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055 YP_002607563.1 identified by match to protein family HMM PF01478; match to protein family HMM PF06750 YP_002607564.1 identified by match to protein family HMM PF03739 YP_002607565.1 identified by match to protein family HMM PF01416; match to protein family HMM TIGR00071 YP_002607567.1 identified by glimmer; putative YP_002607568.1 identified by glimmer; putative YP_002607569.1 identified by match to protein family HMM PF00589 YP_002607570.1 identified by glimmer; putative YP_002607571.1 identified by glimmer; putative YP_002607572.1 identified by glimmer; putative YP_002607573.1 identified by glimmer; putative YP_002607574.1 identified by glimmer; putative YP_002607575.1 identified by glimmer; putative YP_002607576.1 identified by match to protein family HMM PF05707 YP_002607577.1 identified by glimmer; putative YP_002607578.1 identified by match to protein family HMM PF05840 YP_002607579.1 identified by match to protein family HMM PF07883 YP_002607581.1 identified by match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM PF08275; match to protein family HMM TIGR01391 YP_002607582.1 identified by match to protein family HMM PF00764; match to protein family HMM PF02568 YP_002607583.1 identified by glimmer; putative YP_002607585.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_002607586.1 identified by glimmer; putative YP_002607587.1 catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate YP_002607588.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00650 YP_002607589.1 identified by match to protein family HMM PF03968; match to protein family HMM TIGR03002 YP_002607590.1 identified by glimmer; putative YP_002607591.1 identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670 YP_002607592.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_002607593.1 identified by match to protein family HMM PF03330; match to protein family HMM PF05036; match to protein family HMM TIGR00413 YP_002607594.1 identified by match to protein family HMM PF01464; match to protein family HMM PF01476 YP_002607595.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_002607596.1 identified by match to protein family HMM PF00390; match to protein family HMM PF01262; match to protein family HMM PF03949 YP_002607597.1 identified by glimmer; putative YP_002607598.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177 YP_002607599.1 identified by glimmer; putative YP_002607601.1 identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120 YP_002607602.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_002607603.1 identified by match to protein family HMM PF07693 YP_002607604.1 identified by match to protein family HMM PF00899 YP_002607605.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_002607608.1 identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00656; match to protein family HMM TIGR00657 YP_002607609.1 hydrolyzes diadenosine polyphosphate YP_002607610.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_002607611.1 identified by match to protein family HMM PF02107 YP_002607612.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_002607614.1 identified by match to protein family HMM PF03692 YP_002607615.1 identified by match to protein family HMM PF05175 YP_002607616.1 identified by match to protein family HMM PF02348; match to protein family HMM TIGR00466 YP_002607617.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_002607618.1 identified by match to protein family HMM PF02915 YP_002607619.1 identified by match to protein family HMM PF01558 YP_002607620.1 identified by match to protein family HMM PF02775 YP_002607621.1 identified by match to protein family HMM PF01855 YP_002607622.1 identified by match to protein family HMM PF00037 YP_002607623.1 identified by match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019 YP_002607624.1 catalyzes the interconversion of succinyl-CoA and succinate YP_002607625.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723 YP_002607626.1 identified by match to protein family HMM PF05681; match to protein family HMM TIGR00722 YP_002607627.1 Catalyzes the reversible oxidation of malate to oxaloacetate YP_002607628.1 identified by match to protein family HMM PF03971; match to protein family HMM TIGR00178 YP_002607629.1 identified by match to protein family HMM PF02618 YP_002607631.1 identified by match to protein family HMM PF00376 YP_002607632.1 identified by match to protein family HMM PF00226; match to protein family HMM PF01556 YP_002607633.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_002607634.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052 YP_002607636.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_002607637.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_002607638.1 identified by match to protein family HMM PF03205; match to protein family HMM TIGR00176 YP_002607640.1 identified by match to protein family HMM PF00694; match to protein family HMM TIGR02084; match to protein family HMM TIGR02087 YP_002607641.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_002607644.1 identified by match to protein family HMM PF01743 YP_002607645.1 identified by match to protein family HMM PF00551; match to protein family HMM PF01842; match to protein family HMM TIGR00655 YP_002607647.1 identified by match to protein family HMM PF00588 YP_002607648.1 identified by glimmer; putative YP_002607650.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_002607651.1 identified by match to protein family HMM PF03349 YP_002607652.1 identified by match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358 YP_002607653.1 identified by match to protein family HMM PF08668 YP_002607655.1 identified by glimmer; putative YP_002607656.1 identified by match to protein family HMM PF00263 YP_002607657.1 identified by glimmer; putative YP_002607658.1 identified by glimmer; putative YP_002607659.1 identified by glimmer; putative YP_002607660.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_002607661.1 heat shock protein involved in degradation of misfolded proteins YP_002607662.1 heat shock protein involved in degradation of misfolded proteins YP_002607663.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_002607664.1 identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229 YP_002607665.1 identified by glimmer; putative YP_002607666.1 identified by glimmer; putative YP_002607667.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002607668.1 identified by match to protein family HMM PF00072 YP_002607669.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423 YP_002607670.1 identified by match to protein family HMM PF01909; match to protein family HMM PF01966; match to protein family HMM PF08335 YP_002607671.1 identified by match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002607672.1 identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573 YP_002607675.1 identified by match to protein family HMM PF02683 YP_002607677.1 identified by match to protein family HMM PF01593; match to protein family HMM TIGR00562 YP_002607678.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_002607679.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754 YP_002607680.1 Selenoprotein. identified by match to protein family HMM PF02769; match to protein family HMM TIGR00476 YP_002607681.1 identified by match to protein family HMM PF02635 YP_002607682.1 identified by match to protein family HMM PF00403 YP_002607683.1 identified by match to protein family HMM PF01206 YP_002607684.1 identified by match to protein family HMM PF01841; match to protein family HMM TIGR01409 YP_002607685.1 identified by match to protein family HMM PF01206; match to protein family HMM TIGR03527 YP_002607686.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth YP_002607687.1 identified by match to protein family HMM PF00126 YP_002607688.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_002607689.1 identified by match to protein family HMM PF00497; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002607690.1 identified by match to protein family HMM PF00497; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002607691.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002607692.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002607693.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002607695.1 identified by match to protein family HMM PF00037 YP_002607697.1 identified by glimmer; putative YP_002607699.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF04879; match to protein family HMM TIGR01409 YP_002607700.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00384; match to protein family HMM PF01568 YP_002607701.1 identified by match to protein family HMM PF00037 YP_002607702.1 identified by match to protein family HMM TIGR01583 YP_002607703.1 identified by match to protein family HMM PF01547 YP_002607704.1 identified by match to protein family HMM PF00005 YP_002607705.1 identified by match to protein family HMM PF00528 YP_002607706.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA YP_002607707.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_002607708.1 identified by match to protein family HMM PF00106 YP_002607709.1 identified by match to protein family HMM PF02698 YP_002607710.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002607712.1 identified by match to protein family HMM PF03547 YP_002607713.1 identified by glimmer; putative YP_002607714.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_002607716.1 identified by glimmer; putative YP_002607717.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis YP_002607718.1 identified by match to protein family HMM PF00009; match to protein family HMM PF01926; match to protein family HMM PF03144; match to protein family HMM PF09107; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475 YP_002607719.1 identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105 YP_002607720.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_002607721.1 identified by glimmer; putative YP_002607722.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_002607723.1 identified by glimmer; putative YP_002607724.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_002607725.1 identified by glimmer; putative YP_002607726.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_002607728.1 identified by match to protein family HMM PF04011 YP_002607729.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_002607730.1 identified by glimmer; putative YP_002607731.1 identified by match to protein family HMM PF00076 YP_002607732.1 identified by glimmer; putative YP_002607734.1 identified by glimmer; putative YP_002607735.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002607736.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_002607737.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002607738.1 One of three proteins involved in switching the direction of the flagellar rotation YP_002607739.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation YP_002607740.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes YP_002607742.1 identified by match to protein family HMM PF01656 YP_002607743.1 positive regulator of class III flagellar genes YP_002607744.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_002607746.1 identified by match to protein family HMM PF00557 YP_002607747.1 identified by match to protein family HMM PF01220; match to protein family HMM TIGR01088 YP_002607748.1 Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline YP_002607749.1 identified by match to protein family HMM PF00691 YP_002607750.1 identified by match to protein family HMM PF01580 YP_002607751.1 identified by glimmer; putative YP_002607752.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook YP_002607753.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_002607754.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_002607755.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_002607756.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_002607757.1 identified by match to protein family HMM PF01250; match to protein family HMM TIGR00166 YP_002607758.1 activates fatty acids by binding to coenzyme A YP_002607759.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002607760.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002607761.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002607762.1 identified by match to protein family HMM PF00482 YP_002607763.1 identified by match to protein family HMM PF00437; match to protein family HMM PF05157 YP_002607764.1 identified by glimmer; putative YP_002607766.1 identified by glimmer; putative YP_002607767.1 identified by match to protein family HMM PF00263 YP_002607768.1 identified by glimmer; putative YP_002607769.1 identified by glimmer; putative YP_002607771.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002607772.1 identified by glimmer; putative YP_002607773.1 identified by glimmer; putative YP_002607774.1 identified by glimmer; putative YP_002607775.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1 YP_002607776.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_002607777.1 identified by glimmer; putative YP_002607779.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125 YP_002607780.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432 YP_002607782.1 identified by match to protein family HMM PF03783 YP_002607783.1 identified by glimmer; putative YP_002607784.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_002607785.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_002607786.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_002607787.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_002607788.1 identified by match to protein family HMM PF00293 YP_002607789.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF08376 YP_002607790.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002607791.1 identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086 YP_002607792.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_002607793.1 identified by match to protein family HMM PF01018; match to protein family HMM PF01926; match to protein family HMM TIGR02729 YP_002607794.1 involved in the peptidyltransferase reaction during translation YP_002607795.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_002607796.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_002607797.1 identified by match to protein family HMM PF01734 YP_002607798.1 forms a direct contact with the tRNA during translation YP_002607799.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_002607802.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin YP_002607803.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_002607804.1 identified by match to protein family HMM PF01474; match to protein family HMM TIGR01358 YP_002607806.1 identified by match to protein family HMM PF00361 YP_002607807.1 identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972 YP_002607808.1 identified by match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974 YP_002607809.1 identified by match to protein family HMM PF00420 YP_002607810.1 identified by match to protein family HMM PF00499 YP_002607811.1 identified by match to protein family HMM PF00037 YP_002607812.1 identified by match to protein family HMM PF00146 YP_002607813.1 identified by match to protein family HMM PF00329; match to protein family HMM PF00346 YP_002607814.1 identified by match to protein family HMM PF01058; match to protein family HMM TIGR01957 YP_002607816.1 identified by match to protein family HMM PF00004 YP_002607817.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_002607819.1 identified by glimmer; putative YP_002607822.1 identified by match to protein family HMM PF00534 YP_002607823.1 identified by glimmer; putative YP_002607824.1 identified by glimmer; putative YP_002607826.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_002607829.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990 YP_002607830.1 identified by match to protein family HMM PF00873 YP_002607831.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_002607832.1 identified by match to protein family HMM PF02321 YP_002607834.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_002607835.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002607836.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002607837.1 identified by match to protein family HMM PF03963 YP_002607838.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429 YP_002607839.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07559; match to protein family HMM TIGR02489 YP_002607840.1 identified by match to protein family HMM PF01973 YP_002607841.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002607843.1 identified by match to protein family HMM PF02594; match to protein family HMM TIGR00251 YP_002607845.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A YP_002607846.1 identified by match to protein family HMM PF02591 YP_002607847.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486 YP_002607848.1 identified by glimmer; putative YP_002607849.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_002607850.1 identified by match to protein family HMM PF01937 YP_002607851.1 identified by match to protein family HMM PF00462 YP_002607853.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_002607854.1 identified by match to protein family HMM PF01136 YP_002607856.1 identified by match to protein family HMM PF02811; match to protein family HMM TIGR01856 YP_002607857.1 identified by match to protein family HMM PF07690 YP_002607858.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_002607862.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492 YP_002607863.1 identified by glimmer; putative YP_002607864.1 identified by match to protein family HMM TIGR02757 YP_002607865.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_002607867.1 identified by match to protein family HMM PF02581 YP_002607868.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate YP_002607869.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303 YP_002607870.1 Transfers the fatty acyl group on membrane lipoproteins YP_002607871.1 identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739 YP_002607872.1 identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR01129 YP_002607873.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_002607875.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_002607877.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002607878.1 identified by match to protein family HMM PF08245; match to protein family HMM TIGR01499 YP_002607879.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580 YP_002607880.1 identified by match to protein family HMM PF00004; match to protein family HMM TIGR02397 YP_002607882.1 identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787 YP_002607883.1 identified by match to protein family HMM PF04290 YP_002607884.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_002607885.1 identified by match to protein family HMM PF00166 YP_002607886.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_002607887.1 identified by glimmer; putative YP_002607888.1 identified by glimmer; putative YP_002607889.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002607891.1 identified by glimmer; putative YP_002607892.1 identified by glimmer; putative YP_002607894.1 identified by glimmer; putative YP_002607895.1 identified by glimmer; putative YP_002607896.1 identified by glimmer; putative YP_002607897.1 identified by match to protein family HMM PF00589 YP_002607898.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_002607899.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229 YP_002607900.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_002607901.1 identified by match to protein family HMM PF01782; match to protein family HMM PF05239; match to protein family HMM TIGR02273 YP_002607903.1 identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002 YP_002607904.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_002607905.1 identified by match to protein family HMM PF00849 YP_002607906.1 identified by glimmer; putative YP_002607908.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409 YP_002607909.1 identified by match to protein family HMM PF00037 YP_002607910.1 identified by match to protein family HMM PF03916 YP_002607911.1 identified by match to protein family HMM PF00085; match to protein family HMM PF00462; match to protein family HMM TIGR01068 YP_002607913.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; match to protein family HMM TIGR01292 YP_002607914.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_002607915.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_002607916.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212 YP_002607917.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002607918.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002607919.1 identified by match to protein family HMM PF00753 YP_002607920.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727 YP_002607922.1 identified by match to protein family HMM PF00448; match to protein family HMM TIGR00064 YP_002607923.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_002607924.1 identified by match to protein family HMM PF04519 YP_002607925.1 identified by match to protein family HMM PF01551 YP_002607926.1 identified by match to protein family HMM PF00226 YP_002607927.1 identified by match to protein family HMM PF01209 YP_002607928.1 identified by match to protein family HMM PF00383; match to protein family HMM TIGR00326 YP_002607929.1 identified by match to protein family HMM PF02576 YP_002607930.1 identified by match to protein family HMM PF05116; match to protein family HMM PF08282 YP_002607931.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_002607932.1 identified by match to protein family HMM PF00009; match to protein family HMM PF01926; match to protein family HMM PF03144; match to protein family HMM PF04760; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR00487 YP_002607934.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_002607936.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_002607937.1 blocks the formation of polar Z-ring septums YP_002607938.1 identified by match to protein family HMM PF01551 YP_002607939.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_002607940.1 identified by match to protein family HMM PF01312; match to protein family HMM TIGR00328 YP_002607941.1 identified by match to protein family HMM PF00324; match to protein family HMM PF03845 YP_002607942.1 identified by match to protein family HMM TIGR00347 YP_002607943.1 identified by match to protein family HMM PF03061 YP_002607944.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851 YP_002607946.1 identified by match to protein family HMM PF01502; match to protein family HMM PF01503; match to protein family HMM TIGR03188; match to protein family HMM TIGR03456 YP_002607947.1 identified by match to protein family HMM PF01145 YP_002607948.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_002607949.1 identified by match to protein family HMM PF00171; match to protein family HMM PF05893 YP_002607950.1 identified by glimmer; putative YP_002607951.1 identified by glimmer; putative YP_002607952.1 identified by match to protein family HMM PF01266 YP_002607955.1 identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414 YP_002607956.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02796 YP_002607957.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898 YP_002607958.1 identified by match to protein family HMM PF02754 YP_002607959.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02589 YP_002607960.1 identified by match to protein family HMM PF02589 YP_002607961.1 identified by match to protein family HMM PF01106 YP_002607962.1 identified by glimmer; putative YP_002607964.1 identified by match to protein family HMM PF00291 YP_002607965.1 identified by match to protein family HMM PF01464 YP_002607967.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_002607968.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF07885 YP_002607969.1 identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009 YP_002607971.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990 YP_002607972.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_002607973.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_002607974.1 identified by match to protein family HMM PF00999; match to protein family HMM PF02254 YP_002607975.1 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149 YP_002607976.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002607977.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 YP_002607978.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_002607980.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617 YP_002607982.1 identified by match to protein family HMM PF03102; match to protein family HMM PF08666; match to protein family HMM TIGR03586 YP_002607983.1 identified by glimmer; putative YP_002607984.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05893 YP_002607985.1 identified by match to protein family HMM PF04443 YP_002607986.1 identified by match to protein family HMM PF00501 YP_002607987.1 identified by match to protein family HMM PF00106 YP_002607988.1 identified by glimmer; putative YP_002607990.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01518 YP_002607991.1 identified by match to protein family HMM PF04464 YP_002607992.1 identified by match to protein family HMM PF04464 YP_002607993.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01128; match to protein family HMM TIGR00453 YP_002607994.1 identified by match to protein family HMM PF02348; match to protein family HMM TIGR03584 YP_002607995.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01212 YP_002607996.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR03589 YP_002607997.1 identified by match to protein family HMM PF01973 YP_002607998.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700; match to protein family HMM PF07196 YP_002607999.1 FlaA; structural flagella protein; in Helicobacter the flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions YP_002608000.1 identified by match to protein family HMM PF00575; match to protein family HMM PF01176; match to protein family HMM TIGR00008 YP_002608001.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn YP_002608002.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_002608003.1 late assembly protein YP_002608004.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_002608005.1 identified by match to protein family HMM PF00861; match to protein family HMM TIGR00060 YP_002608006.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_002608007.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_002608008.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif YP_002608009.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_002608010.1 identified by match to protein family HMM PF00467; match to protein family HMM TIGR01079 YP_002608011.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_002608012.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_002608013.1 one of the stabilizing components for the large ribosomal subunit YP_002608014.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_002608015.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_002608016.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_002608017.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_002608018.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_002608019.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_002608020.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_002608021.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_002608022.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_002608023.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_002608024.1 identified by match to protein family HMM PF01061 YP_002608025.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01061 YP_002608026.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005 YP_002608027.1 identified by match to protein family HMM PF00529 YP_002608028.1 identified by match to protein family HMM PF02321 YP_002608029.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002608030.1 identified by match to protein family HMM PF05635; match to protein family HMM TIGR02436 YP_002608031.1 identified by match to protein family HMM PF00529 YP_002608032.1 identified by match to protein family HMM PF02516 YP_002608033.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02706 YP_002608034.1 identified by match to protein family HMM PF02397 YP_002608035.1 identified by match to protein family HMM PF00535 YP_002608036.1 identified by match to protein family HMM PF04932 YP_002608038.1 identified by glimmer; putative YP_002608039.1 identified by match to protein family HMM PF00534 YP_002608040.1 identified by glimmer; putative YP_002608041.1 identified by match to protein family HMM PF01075 YP_002608042.1 identified by glimmer; putative YP_002608043.1 identified by glimmer; putative YP_002608044.1 identified by glimmer; putative YP_002608045.1 identified by match to protein family HMM PF00534 YP_002608046.1 identified by match to protein family HMM PF01943 YP_002608047.1 identified by match to protein family HMM PF01370 YP_002608048.1 identified by match to protein family HMM PF01370; match to protein family HMM TIGR01472 YP_002608049.1 identified by match to protein family HMM PF00293 YP_002608050.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479 YP_002608051.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_002608054.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00984; match to protein family HMM PF03720 YP_002608055.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01210; match to protein family HMM PF03721 YP_002608056.1 identified by match to protein family HMM PF05635 YP_002608057.1 identified by match to protein family HMM TIGR00426 YP_002608058.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_002608062.1 identified by match to protein family HMM PF00709; match to protein family HMM TIGR00184 YP_002608063.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_002608064.1 identified by match to protein family HMM PF00266 YP_002608065.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_002608066.1 identified by match to protein family HMM PF00348 YP_002608068.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_002608069.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_002608071.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01085 YP_002608073.1 identified by match to protein family HMM PF01106 YP_002608074.1 identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059 YP_002608075.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_002608076.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_002608077.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_002608078.1 identified by match to protein family HMM PF00416 YP_002608079.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_002608080.1 identified by match to protein family HMM PF00011 YP_002608081.1 identified by glimmer; putative YP_002608082.1 identified by match to protein family HMM PF00924 YP_002608083.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_002608084.1 identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205 YP_002608085.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_002608086.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella YP_002608087.1 identified by match to protein family HMM PF01098 YP_002608088.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_002608089.1 identified by match to protein family HMM TIGR00441 YP_002608090.1 identified by match to protein family HMM PF00294; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02198; match to protein family HMM TIGR02199 YP_002608091.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR02197 YP_002608092.1 identified by match to protein family HMM PF08645; match to protein family HMM TIGR00213; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662 YP_002608093.1 identified by match to protein family HMM PF01075; match to protein family HMM TIGR02195 YP_002608094.1 identified by match to protein family HMM PF00534 YP_002608095.1 identified by match to protein family HMM PF04932 YP_002608096.1 identified by match to protein family HMM PF00534 YP_002608097.1 identified by match to protein family HMM PF00132 YP_002608098.1 identified by match to protein family HMM PF01075 YP_002608099.1 identified by match to protein family HMM PF01075 YP_002608100.1 identified by match to protein family HMM PF00534 YP_002608101.1 identified by match to protein family HMM PF01075; match to protein family HMM TIGR02201 YP_002608102.1 identified by match to protein family HMM PF00535 YP_002608103.1 identified by match to protein family HMM PF03279 YP_002608104.1 identified by match to protein family HMM PF01075 YP_002608105.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002608106.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197 YP_002608107.1 identified by match to protein family HMM PF00149 YP_002608108.1 identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368 YP_002608109.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_002608110.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002608111.1 identified by match to protein family HMM PF00574; match to protein family HMM TIGR00493 YP_002608112.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_002608113.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_002608114.1 involved in type III protein export during flagellum assembly YP_002608115.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_002608116.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002608117.1 identified by glimmer; putative YP_002608118.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_002608119.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002608120.1 identified by match to protein family HMM PF07670 YP_002608122.1 identified by match to protein family HMM PF01871; match to protein family HMM TIGR00296 YP_002608124.1 identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258 YP_002608125.1 identified by glimmer; putative YP_002608126.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis YP_002608127.1 identified by match to protein family HMM PF00581 YP_002608128.1 identified by match to protein family HMM PF04371 YP_002608129.1 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins YP_002608130.1 identified by match to protein family HMM PF00795 YP_002608131.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_002608132.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01410 YP_002608133.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479 YP_002608135.1 identified by match to protein family HMM PF00165 YP_002608136.1 identified by match to protein family HMM PF08279 YP_002608137.1 identified by match to protein family HMM PF01297 YP_002608138.1 identified by match to protein family HMM PF00005 YP_002608139.1 identified by match to protein family HMM PF00950 YP_002608140.1 identified by match to protein family HMM PF00588 YP_002608143.1 identified by match to protein family HMM PF00753 YP_002608148.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002608149.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02495 YP_002608150.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002608151.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_002608152.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_002608154.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649 YP_002608155.1 identified by match to protein family HMM PF00398 YP_002608156.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_002608157.1 identified by glimmer; putative YP_002608159.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_002608161.1 identified by match to protein family HMM PF09312 YP_002608162.1 identified by match to protein family HMM PF01047 YP_002608163.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002608164.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_002608165.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002608166.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_002608167.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_002608168.1 identified by match to protein family HMM PF01029; match to protein family HMM TIGR01951 YP_002608169.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990 YP_002608170.1 identified by glimmer; putative YP_002608171.1 identified by match to protein family HMM PF03458 YP_002608172.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity