-- dump date 20140619_162922 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 598659000001 SEQ_END SEQ_END NC_012115.1 1676444 1676444 DR NC_012115.1; contig end 1676444..1676444 Nautilia profundicola AmH YP_002606443.1 CDS dnaA NC_012115.1 101 1411 D identified by match to protein family HMM PF00308; match to protein family HMM PF08299; match to protein family HMM TIGR00362; chromosomal replication initiator protein DnaA 101..1411 Nautilia profundicola AmH 7505201 YP_002606444.1 CDS dnaN NC_012115.1 1534 2586 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 1534..2586 Nautilia profundicola AmH 7504778 YP_002606445.1 CDS gyrB NC_012115.1 2620 4896 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 2620..4896 Nautilia profundicola AmH 7505067 YP_002606446.1 CDS NAMH_0004 NC_012115.1 4905 5294 D NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 4905..5294 Nautilia profundicola AmH 7505342 YP_002606447.1 CDS NAMH_0005 NC_012115.1 5295 6494 R identified by match to protein family HMM PF00482; putative general secretion pathway protein F complement(5295..6494) Nautilia profundicola AmH 7505260 YP_002606448.1 CDS NAMH_0006 NC_012115.1 6503 8005 R identified by match to protein family HMM PF00437; general secretion pathway protein E complement(6503..8005) Nautilia profundicola AmH 7504171 YP_002606449.1 CDS NAMH_0007 NC_012115.1 8002 9744 R identified by match to protein family HMM PF00263; match to protein family HMM PF03958; putative GspD complement(8002..9744) Nautilia profundicola AmH 7505095 YP_002606450.1 CDS NAMH_0008 NC_012115.1 9731 10480 R identified by glimmer; putative; hypothetical protein complement(9731..10480) Nautilia profundicola AmH 7504331 YP_002606451.1 CDS NAMH_0009 NC_012115.1 10467 10952 R an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; putative RNase L inhibitor complement(10467..10952) Nautilia profundicola AmH 7505377 YP_002606452.1 CDS NAMH_0010 NC_012115.1 10949 11221 R putative valyl-tRNA synthetase complement(10949..11221) Nautilia profundicola AmH 7505000 YP_002606453.1 CDS NAMH_0011 NC_012115.1 11304 12155 R identified by glimmer; putative; hypothetical protein complement(11304..12155) Nautilia profundicola AmH 7503894 YP_002606454.1 CDS NAMH_0012 NC_012115.1 12133 12990 R identified by glimmer; putative; hypothetical protein complement(12133..12990) Nautilia profundicola AmH 7504811 YP_002606455.1 CDS NAMH_0013 NC_012115.1 13116 14627 D putative lipoprotein 13116..14627 Nautilia profundicola AmH 7504492 YP_002606456.1 CDS gspG NC_012115.1 14678 15097 D identified by match to protein family HMM PF07963; match to protein family HMM PF08334; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532; general secretion pathway protein G 14678..15097 Nautilia profundicola AmH 7504976 YP_002606457.1 CDS NAMH_0015 NC_012115.1 15193 15525 D identified by glimmer; putative; hypothetical protein 15193..15525 Nautilia profundicola AmH 7505420 YP_002606458.1 CDS NAMH_0016 NC_012115.1 15522 15905 D identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; prepilin-type N-terminal cleavage/methylation domain protein 15522..15905 Nautilia profundicola AmH 7503841 YP_002606459.1 CDS NAMH_0017 NC_012115.1 15902 16384 D identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; prokaryotic N-terminal methylation motif domain protein 15902..16384 Nautilia profundicola AmH 7504936 YP_002606460.1 CDS NAMH_0018 NC_012115.1 16384 17724 D identified by match to protein family HMM PF02511; putative thymidylate synthase 16384..17724 Nautilia profundicola AmH 7504309 YP_002606461.1 CDS NAMH_0019 NC_012115.1 17740 18126 D identified by match to protein family HMM PF01627; putative CheA signal transduction histidine kinase, no good domain identification 17740..18126 Nautilia profundicola AmH 7504512 YP_002606462.1 CDS NAMH_0021 NC_012115.1 18143 19051 D identified by match to protein family HMM PF01189; NOL1/NOP2/sun family protein 18143..19051 Nautilia profundicola AmH 7503857 YP_002606463.1 CDS NAMH_0020 NC_012115.1 19038 19925 R putative lipoprotein complement(19038..19925) Nautilia profundicola AmH 7505135 YP_002606464.1 CDS NAMH_0022 NC_012115.1 19925 20866 R putative lipoprotein complement(19925..20866) Nautilia profundicola AmH 7504814 YP_002606465.1 CDS NAMH_0023 NC_012115.1 20866 21099 R hypothetical protein complement(20866..21099) Nautilia profundicola AmH 7504923 YP_002606466.1 CDS NAMH_0024 NC_012115.1 21321 21890 R identified by match to protein family HMM PF01813; match to protein family HMM TIGR00309; V-type ATPase, D subunit complement(21321..21890) Nautilia profundicola AmH 7504791 YP_002606467.1 CDS NAMH_0025 NC_012115.1 21877 23205 R produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B complement(21877..23205) Nautilia profundicola AmH 7503910 YP_002606468.1 CDS NAMH_0026 NC_012115.1 23207 24922 R identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; ATP synthase alpha/beta family, nucleotide-binding domain protein complement(23207..24922) Nautilia profundicola AmH 7504411 YP_002606469.1 CDS NAMH_0027 NC_012115.1 24910 25422 R identified by glimmer; putative; hypothetical protein complement(24910..25422) Nautilia profundicola AmH 7504684 YP_002606470.1 CDS NAMH_0028 NC_012115.1 25400 25693 R identified by match to protein family HMM PF01990; ATP synthase (F/14-kDa) subunit complement(25400..25693) Nautilia profundicola AmH 7504134 YP_002606471.1 CDS NAMH_0029 NC_012115.1 25690 25977 R identified by match to protein family HMM PF00137; V-ATPase F-subunit complement(25690..25977) Nautilia profundicola AmH 7505151 YP_002606472.1 CDS NAMH_0030 NC_012115.1 25952 27667 R identified by match to protein family HMM PF01496; putative V-type ATP synthase subunit I complement(25952..27667) Nautilia profundicola AmH 7504910 YP_002606473.1 CDS NAMH_0031 NC_012115.1 27669 28424 R identified by glimmer; putative; hypothetical protein complement(27669..28424) Nautilia profundicola AmH 7505006 YP_002606474.1 CDS NAMH_0032 NC_012115.1 28397 28708 R identified by glimmer; putative; hypothetical protein complement(28397..28708) Nautilia profundicola AmH 7503868 YP_002606475.1 CDS coaE NC_012115.1 28871 29440 R identified by match to protein family HMM PF01121; match to protein family HMM TIGR00152; dephospho-CoA kinase complement(28871..29440) Nautilia profundicola AmH 7504363 YP_002606476.1 CDS NAMH_0034 NC_012115.1 29455 29955 R hypothetical protein complement(29455..29955) Nautilia profundicola AmH 7503959 YP_002606477.1 CDS NAMH_0035 NC_012115.1 30050 30268 D identified by glimmer; putative; hypothetical protein 30050..30268 Nautilia profundicola AmH 7504950 YP_002606478.1 CDS NAMH_0036 NC_012115.1 30319 31452 D identified by match to protein family HMM PF02677; hypothetical protein 30319..31452 Nautilia profundicola AmH 7503822 YP_002606479.1 CDS fabZ NC_012115.1 31469 31909 D identified by match to protein family HMM PF07977; match to protein family HMM TIGR01750; 3-hydroxyacyl-ACP dehydratase 31469..31909 Nautilia profundicola AmH 7504555 YP_002606480.1 CDS lpxA NC_012115.1 31926 32705 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 31926..32705 Nautilia profundicola AmH 7504321 YP_002606481.1 CDS clpX NC_012115.1 32689 33912 D identified by match to protein family HMM PF00004; match to protein family HMM PF06689; match to protein family HMM PF07724; match to protein family HMM TIGR00382; ATP-dependent Clp protease, ATP-binding subunit ClpX 32689..33912 Nautilia profundicola AmH 7504213 YP_002606482.1 CDS NAMH_0040 NC_012115.1 33902 34927 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 33902..34927 Nautilia profundicola AmH 7504780 YP_002606483.1 CDS NAMH_0041 NC_012115.1 34920 35675 D putative periplasmic protein 34920..35675 Nautilia profundicola AmH 7505437 YP_002606484.1 CDS NAMH_0043 NC_012115.1 35703 36248 D BdrA1 35703..36248 Nautilia profundicola AmH 7504256 YP_002606485.1 CDS NAMH_0042 NC_012115.1 36245 36943 R identified by match to protein family HMM PF03883; hypothetical protein complement(36245..36943) Nautilia profundicola AmH 7505211 YP_002606486.1 CDS NAMH_0044 NC_012115.1 36952 38337 R identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; serine protease complement(36952..38337) Nautilia profundicola AmH 7505297 YP_002606487.1 CDS NAMH_0045 NC_012115.1 38471 38866 D identified by glimmer; putative; hypothetical protein 38471..38866 Nautilia profundicola AmH 7504578 YP_002606488.1 CDS ribE NC_012115.1 39031 39636 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(39031..39636) Nautilia profundicola AmH 7505303 YP_002606489.1 CDS NAMH_0047 NC_012115.1 39629 40570 R identified by match to protein family HMM PF01207; tRNA-dihydrouridine synthase B complement(39629..40570) Nautilia profundicola AmH 7504571 YP_002606490.1 CDS NAMH_0048 NC_012115.1 40545 41468 R identified by glimmer; putative; hypothetical protein complement(40545..41468) Nautilia profundicola AmH 7505605 YP_002606491.1 CDS NAMH_0049 NC_012115.1 41475 41828 R identified by match to protein family HMM PF01258; transcriptional regulator, TraR/DksA family complement(41475..41828) Nautilia profundicola AmH 7504364 YP_002606492.1 CDS NAMH_0050 NC_012115.1 42215 42910 R identified by match to protein family HMM PF02581; thiamine monophosphate synthase complement(42215..42910) Nautilia profundicola AmH 7504565 YP_002606493.1 CDS accD NC_012115.1 43020 43868 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(43020..43868) Nautilia profundicola AmH 7504803 YP_002606494.1 CDS NAMH_0052 NC_012115.1 43872 44561 R identified by match to protein family HMM PF00459; inositol monophosphatase family complement(43872..44561) Nautilia profundicola AmH 7505099 YP_002606495.1 CDS NAMH_0053 NC_012115.1 44558 45292 R thiol:disulfide interchange protein complement(44558..45292) Nautilia profundicola AmH 7505209 YP_002606496.1 CDS pyrF NC_012115.1 45292 45984 R type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(45292..45984) Nautilia profundicola AmH 7505291 YP_002606497.1 CDS dcd NC_012115.1 45981 46541 R identified by match to protein family HMM PF00692; match to protein family HMM TIGR02274; deoxycytidine triphosphate deaminase complement(45981..46541) Nautilia profundicola AmH 7505072 YP_002606498.1 CDS NAMH_0056 NC_012115.1 46657 46911 D identified by glimmer; putative; hypothetical protein 46657..46911 Nautilia profundicola AmH 7505516 YP_002606499.1 CDS accB NC_012115.1 46921 47376 D identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase, biotin carboxyl carrier protein 46921..47376 Nautilia profundicola AmH 7505140 YP_002606500.1 CDS accC NC_012115.1 47377 48711 D biotin carboxylase; biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA; catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; biotin carboxylase 47377..48711 Nautilia profundicola AmH 7504060 YP_002606501.1 CDS NAMH_0058 NC_012115.1 48695 49429 R identified by glimmer; putative; hypothetical protein complement(48695..49429) Nautilia profundicola AmH 7504924 YP_002606502.1 CDS NAMH_0061 NC_012115.1 49717 50637 D identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 49717..50637 Nautilia profundicola AmH 7505350 YP_002606503.1 CDS NAMH_0060 NC_012115.1 50634 51434 R identified by match to protein family HMM PF00924; MscS Mechanosensitive ion channel complement(50634..51434) Nautilia profundicola AmH 7504809 YP_002606504.1 CDS NAMH_0062 NC_012115.1 51479 52171 R identified by match to protein family HMM PF01832; mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain protein complement(51479..52171) Nautilia profundicola AmH 7503996 YP_002606505.1 CDS rnhB NC_012115.1 52181 52771 R identified by match to protein family HMM PF01351; ribonuclease HII complement(52181..52771) Nautilia profundicola AmH 7504232 YP_002606506.1 CDS NAMH_0064 NC_012115.1 52747 53712 R hypothetical protein complement(52747..53712) Nautilia profundicola AmH 7504330 YP_002606507.1 CDS NAMH_0065 NC_012115.1 53741 54787 R identified by match to protein family HMM PF07690; putative MFS metabolite transporter complement(53741..54787) Nautilia profundicola AmH 7505438 YP_002606508.1 CDS NAMH_0066 NC_012115.1 54777 55181 R identified by match to protein family HMM PF01230; histidine triad (HIT) protein complement(54777..55181) Nautilia profundicola AmH 7503832 YP_002606509.1 CDS pyrE NC_012115.1 55181 55792 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(55181..55792) Nautilia profundicola AmH 7504062 YP_002606510.1 CDS frr NC_012115.1 55818 56372 R identified by match to protein family HMM PF01765; match to protein family HMM TIGR00496; ribosome recycling factor complement(55818..56372) Nautilia profundicola AmH 7504730 YP_002606511.1 CDS NAMH_0069 NC_012115.1 56372 57295 R identified by match to protein family HMM PF01522; putative polysaccharide deacetylase complement(56372..57295) Nautilia profundicola AmH 7504198 YP_002606512.1 CDS NAMH_0070 NC_012115.1 57295 57618 R identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; protein-export membrane protein SecG complement(57295..57618) Nautilia profundicola AmH 7505500 YP_002606513.1 CDS NAMH_0071 NC_012115.1 57672 58328 D identified by similarity to GB:AAD08298.1; putative methyl transferase 57672..58328 Nautilia profundicola AmH 7505242 YP_002606514.1 CDS NAMH_0072 NC_012115.1 58361 58960 D hypothetical protein 58361..58960 Nautilia profundicola AmH 7504784 YP_002606515.1 CDS NAMH_0074 NC_012115.1 59027 59425 R thiamine-phosphate pyrophosphorylase complement(59027..59425) Nautilia profundicola AmH 7505160 YP_002606516.1 CDS NAMH_0075 NC_012115.1 59415 60158 R identified by match to protein family HMM PF01027; integral membrane protein complement(59415..60158) Nautilia profundicola AmH 7504091 YP_002606517.1 CDS NAMH_0076 NC_012115.1 60253 62466 R identified by match to protein family HMM PF00515; match to protein family HMM PF07719; TPR domain protein complement(60253..62466) Nautilia profundicola AmH 7503854 YP_002606518.1 CDS serS NC_012115.1 62475 63725 R identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414; seryl-tRNA synthetase complement(62475..63725) Nautilia profundicola AmH 7505257 YP_002606519.1 CDS NAMH_0078 NC_012115.1 63798 64937 D identified by match to protein family HMM PF01094; high affinity branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein 63798..64937 Nautilia profundicola AmH 7505528 YP_002606520.1 CDS NAMH_0079 NC_012115.1 65020 66696 D identified by match to protein family HMM PF00753; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase (GGDEF) domain protein 65020..66696 Nautilia profundicola AmH 7504285 YP_002606521.1 CDS NAMH_0080 NC_012115.1 66686 67102 D identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229; chemotaxis sensory transducer 66686..67102 Nautilia profundicola AmH 7504906 YP_002606522.1 CDS NAMH_0081 NC_012115.1 67104 68018 D identified by match to protein family HMM PF02653; ABC transporter permease 67104..68018 Nautilia profundicola AmH 7504435 YP_002606523.1 CDS NAMH_0082 NC_012115.1 68021 69073 D identified by match to protein family HMM PF02653; ABC transporter permease 68021..69073 Nautilia profundicola AmH 7504891 YP_002606524.1 CDS thiG NC_012115.1 69090 69869 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 69090..69869 Nautilia profundicola AmH 7504643 YP_002606525.1 CDS NAMH_0085 NC_012115.1 69993 70757 D hypothetical protein 69993..70757 Nautilia profundicola AmH 7505111 YP_002606526.1 CDS NAMH_0084 NC_012115.1 70751 71794 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; ggdef domain protein complement(70751..71794) Nautilia profundicola AmH 7504548 YP_002606527.1 CDS pckA NC_012115.1 72416 73993 R PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase complement(72416..73993) Nautilia profundicola AmH 7505175 YP_002606528.1 CDS NAMH_0091 NC_012115.1 74122 74334 R identified by glimmer; putative; hypothetical protein complement(74122..74334) Nautilia profundicola AmH 7504530 YP_002606529.1 CDS NAMH_0092 NC_012115.1 74344 75540 R identified by match to protein family HMM PF02322; cytochrome bd oxidase subunit II complement(74344..75540) Nautilia profundicola AmH 7504889 YP_002606530.1 CDS NAMH_0093 NC_012115.1 75540 77114 R identified by match to protein family HMM PF01654; cytochrome D ubiquinol oxidase subunit I complement(75540..77114) Nautilia profundicola AmH 7504458 YP_002606531.1 CDS NAMH_0094 NC_012115.1 77116 77346 R hypothetical protein complement(77116..77346) Nautilia profundicola AmH 7505328 YP_002606532.1 CDS NAMH_0095 NC_012115.1 77526 77912 R hypothetical protein complement(77526..77912) Nautilia profundicola AmH 7505517 YP_002606533.1 CDS rnhA NC_012115.1 77906 78448 D identified by match to protein family HMM PF00075; RNase H 77906..78448 Nautilia profundicola AmH 7504320 YP_002606534.1 CDS NAMH_0097 NC_012115.1 78448 79224 D identified by match to protein family HMM PF08668; putative signal transduction protein 78448..79224 Nautilia profundicola AmH 7503918 YP_002606535.1 CDS rnc NC_012115.1 79214 79894 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 79214..79894 Nautilia profundicola AmH 7505402 YP_002606536.1 CDS aroC NC_012115.1 79978 81051 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 79978..81051 Nautilia profundicola AmH 7504032 YP_002606537.1 CDS NAMH_0099 NC_012115.1 81045 81353 R identified by match to protein family HMM PF07883; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(81045..81353) Nautilia profundicola AmH 7505394 YP_002606538.1 CDS NAMH_0101 NC_012115.1 81350 81964 R identified by match to protein family HMM PF02621; hypothetical protein complement(81350..81964) Nautilia profundicola AmH 7505092 YP_002606539.1 CDS NAMH_0102 NC_012115.1 82033 82254 D identified by match to protein family HMM PF02597; hypothetical protein 82033..82254 Nautilia profundicola AmH 7504978 YP_002606540.1 CDS moaE NC_012115.1 82285 82719 D identified by match to protein family HMM PF02391; molybdopterin converting factor, subunit 2 82285..82719 Nautilia profundicola AmH 7504222 YP_002606541.1 CDS NAMH_0104 NC_012115.1 82729 83916 D identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin binding domain protein 82729..83916 Nautilia profundicola AmH 7504351 YP_002606542.1 CDS NAMH_0105 NC_012115.1 83944 84465 D identified by glimmer; putative; hypothetical protein 83944..84465 Nautilia profundicola AmH 7505152 YP_002606543.1 CDS NAMH_0106 NC_012115.1 84542 84991 D hypothetical protein 84542..84991 Nautilia profundicola AmH 7504589 YP_002606544.1 CDS nspC NC_012115.1 85230 86345 D identified by match to protein family HMM PF00278; match to protein family HMM TIGR01047; carboxynorspermidine decarboxylase 85230..86345 Nautilia profundicola AmH 7504310 YP_002606545.1 CDS NAMH_0107 NC_012115.1 86326 88305 R identified by match to protein family HMM PF00563; match to protein family HMM PF02378; putative FOG: EAL domain protein complement(86326..88305) Nautilia profundicola AmH 7505259 YP_002606546.1 CDS NAMH_0109 NC_012115.1 88365 90416 R identified by match to protein family HMM PF00563; match to protein family HMM PF02378; cyclic diguanylate phosphodiesterase (EAL) domain protein complement(88365..90416) Nautilia profundicola AmH 7504451 YP_002606547.1 CDS topA NC_012115.1 90566 92752 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 90566..92752 Nautilia profundicola AmH 7504203 YP_002606548.1 CDS NAMH_0111 NC_012115.1 92762 93286 D identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphodiesterase 92762..93286 Nautilia profundicola AmH 7504041 YP_002606549.1 CDS bioB NC_012115.1 93288 94118 D catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase 93288..94118 Nautilia profundicola AmH 7503943 YP_002606550.1 CDS NAMH_0114 NC_012115.1 94108 95247 D identified by match to protein family HMM PF00999; sodium/hydrogen exchanger 94108..95247 Nautilia profundicola AmH 7504354 YP_002606551.1 CDS NAMH_0113 NC_012115.1 95238 95690 R identified by match to protein family HMM PF01814; putative hemerythrin HHE cation binding domain subfamily complement(95238..95690) Nautilia profundicola AmH 7505351 YP_002606552.1 CDS gltX NC_012115.1 95809 97194 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 95809..97194 Nautilia profundicola AmH 7505574 YP_002606553.1 CDS NAMH_0115 NC_012115.1 97191 98324 R putative amino acid transporter complement(97191..98324) Nautilia profundicola AmH 7503942 YP_002606554.1 CDS NAMH_0117 NC_012115.1 98412 99230 D identified by match to protein family HMM PF01381; helix-turn-helix protein 98412..99230 Nautilia profundicola AmH 7503821 YP_002606555.1 CDS NAMH_0118 NC_012115.1 99258 100157 D identified by match to protein family HMM PF00892; integral membrane protein DUF6 99258..100157 Nautilia profundicola AmH 7504700 YP_002606556.1 CDS NAMH_0119 NC_012115.1 100223 101179 D identified by match to protein family HMM PF03480; putative secreted protein 100223..101179 Nautilia profundicola AmH 7504168 YP_002606557.1 CDS NAMH_0120 NC_012115.1 101176 101658 D identified by match to protein family HMM PF04290; hypothetical protein 101176..101658 Nautilia profundicola AmH 7504584 YP_002606558.1 CDS NAMH_0121 NC_012115.1 101648 102982 D identified by match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00786; trap dicarboxylate family transporter, dctm subunit 101648..102982 Nautilia profundicola AmH 7504759 YP_002606559.1 CDS NAMH_0122 NC_012115.1 102979 103698 D identified by match to protein family HMM PF03746; LamB/YcsF family protein 102979..103698 Nautilia profundicola AmH 7504153 YP_002606560.1 CDS NAMH_0123 NC_012115.1 103695 104351 D identified by match to protein family HMM PF02682; allophanate hydrolase subunit 1 superfamily 103695..104351 Nautilia profundicola AmH 7505088 YP_002606561.1 CDS NAMH_0125 NC_012115.1 104344 105246 D identified by match to protein family HMM PF02626; allophanate hydrolase subunit 2 104344..105246 Nautilia profundicola AmH 7504284 YP_002606562.1 CDS NAMH_0124 NC_012115.1 105243 107174 R identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; penicillin-binding protein 1A (PBP-1a) (PBP1a) complement(105243..107174) Nautilia profundicola AmH 7504768 YP_002606563.1 CDS NAMH_0126 NC_012115.1 107176 108234 R identified by match to protein family HMM PF00155; 8-amino-7-oxononanoate synthase complement(107176..108234) Nautilia profundicola AmH 7504702 YP_002606564.1 CDS alaS NC_012115.1 108284 110845 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 108284..110845 Nautilia profundicola AmH 7504618 YP_002606565.1 CDS NAMH_0128 NC_012115.1 110882 111562 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR03304; two component transcriptional regulator, winged helix family 110882..111562 Nautilia profundicola AmH 7504668 YP_002606566.1 CDS NAMH_0129 NC_012115.1 111549 113405 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; putative two-component sensor 111549..113405 Nautilia profundicola AmH 7504347 YP_002606567.1 CDS maf NC_012115.1 113441 113998 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 113441..113998 Nautilia profundicola AmH 7504342 YP_002606568.1 CDS NAMH_0131 NC_012115.1 113988 114884 D identified by similarity to GB:CAA72361.1; putative general glycosylation pathway protein PglG 113988..114884 Nautilia profundicola AmH 7503938 YP_002606569.1 CDS hisH NC_012115.1 114912 115517 D identified by match to protein family HMM PF00117; match to protein family HMM PF07685; match to protein family HMM TIGR01855; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 114912..115517 Nautilia profundicola AmH 7504745 YP_002606570.1 CDS hisA NC_012115.1 115527 116234 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 115527..116234 Nautilia profundicola AmH 7504474 YP_002606571.1 CDS NAMH_0134 NC_012115.1 116466 116843 D identified by match to protein family HMM PF00072; chemotaxis response regulator 116466..116843 Nautilia profundicola AmH 7504513 YP_002606572.1 CDS prmA NC_012115.1 116833 117657 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase 116833..117657 Nautilia profundicola AmH 7503819 YP_002606573.1 CDS NAMH_0136 NC_012115.1 117658 119580 D identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241; HpFtsH 117658..119580 Nautilia profundicola AmH 7504338 YP_002606574.1 CDS NAMH_0137 NC_012115.1 119558 120196 D identified by match to protein family HMM PF02666; match to protein family HMM TIGR00164; putative phosphatidylserine decarboxylase homolog 119558..120196 Nautilia profundicola AmH 7505403 YP_002606575.1 CDS NAMH_0138 NC_012115.1 120186 120893 D identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473; CDP-diacylglycerol--serine O-phosphatidyltransferase 120186..120893 Nautilia profundicola AmH 7504652 YP_002606576.1 CDS leuA NC_012115.1 120968 122518 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 120968..122518 Nautilia profundicola AmH 7503847 YP_002606577.1 CDS engA NC_012115.1 122537 123922 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 122537..123922 Nautilia profundicola AmH 7504487 YP_002606578.1 CDS NAMH_0141 NC_012115.1 123909 124712 D identified by glimmer; putative; hypothetical protein 123909..124712 Nautilia profundicola AmH 7504352 YP_002606579.1 CDS trpS NC_012115.1 124709 125680 D identified by match to protein family HMM PF00579; match to protein family HMM TIGR00233; tryptophanyl-tRNA synthetase 124709..125680 Nautilia profundicola AmH 7505454 YP_002606580.1 CDS NAMH_0143 NC_012115.1 125690 125923 D identified by glimmer; putative; hypothetical protein 125690..125923 Nautilia profundicola AmH 7505379 YP_002606581.1 CDS purM NC_012115.1 125923 126912 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 125923..126912 Nautilia profundicola AmH 7504679 YP_002606582.1 CDS psd NC_012115.1 126909 127697 D catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 126909..127697 Nautilia profundicola AmH 7504161 YP_002606583.1 CDS NAMH_0146 NC_012115.1 127713 128258 D pdp protein 127713..128258 Nautilia profundicola AmH 7505305 YP_002606584.1 CDS NAMH_0148 NC_012115.1 128230 128940 D hypothetical protein 128230..128940 Nautilia profundicola AmH 7504417 YP_002606585.1 CDS NAMH_0147 NC_012115.1 128930 130333 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; ggdef domain protein complement(128930..130333) Nautilia profundicola AmH 7504536 YP_002606586.1 CDS NAMH_0149 NC_012115.1 130327 131304 R identified by glimmer; putative; hypothetical protein complement(130327..131304) Nautilia profundicola AmH 7504890 YP_002606587.1 CDS NAMH_0150 NC_012115.1 131471 132028 D hypothetical protein 131471..132028 Nautilia profundicola AmH 7503844 YP_002606588.1 CDS carA NC_012115.1 132038 133159 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 132038..133159 Nautilia profundicola AmH 7504919 YP_002606589.1 CDS NAMH_0153 NC_012115.1 133188 133340 D identified by glimmer; putative; hypothetical protein 133188..133340 Nautilia profundicola AmH 7504276 YP_002606590.1 CDS NAMH_0152 NC_012115.1 133337 134122 R identified by match to protein family HMM PF02673; match to protein family HMM TIGR00753; putative undecaprenol kinase complement(133337..134122) Nautilia profundicola AmH 7505234 YP_002606591.1 CDS NAMH_0155 NC_012115.1 134182 134943 D identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase 134182..134943 Nautilia profundicola AmH 7504023 YP_002606592.1 CDS NAMH_0154 NC_012115.1 134931 135746 R identified by match to protein family HMM PF00929; exonuclease family complement(134931..135746) Nautilia profundicola AmH 7504627 YP_002606593.1 CDS carB NC_012115.1 135853 139125 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 135853..139125 Nautilia profundicola AmH 7505451 YP_002606594.1 CDS NAMH_0164 NC_012115.1 145263 146084 D an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative; hypothetical protein 145263..146084 Nautilia profundicola AmH 7504245 YP_002606595.1 CDS NAMH_0165 NC_012115.1 146081 146503 D identified by glimmer; putative; hypothetical protein 146081..146503 Nautilia profundicola AmH 7505235 YP_002606596.1 CDS tuf NC_012115.1 147102 148301 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 147102..148301 Nautilia profundicola AmH 7505171 YP_002606597.1 CDS rpmG NC_012115.1 148332 148484 D identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023; ribosomal protein L33 148332..148484 Nautilia profundicola AmH 7504439 YP_002606598.1 CDS secE NC_012115.1 148718 148906 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 148718..148906 Nautilia profundicola AmH 7505164 YP_002606599.1 CDS nusG NC_012115.1 148915 149439 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 148915..149439 Nautilia profundicola AmH 7503824 YP_002606600.1 CDS rplK NC_012115.1 149450 149875 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 149450..149875 Nautilia profundicola AmH 7504955 YP_002606601.1 CDS rplA NC_012115.1 149917 150618 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 149917..150618 Nautilia profundicola AmH 7504101 YP_002606602.1 CDS rplJ NC_012115.1 150706 151185 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 150706..151185 Nautilia profundicola AmH 7504264 YP_002606603.1 CDS rplL NC_012115.1 151213 151587 D identified by match to protein family HMM PF00542; match to protein family HMM TIGR00855; ribosomal protein L7/L12 151213..151587 Nautilia profundicola AmH 7505290 YP_002606604.1 CDS rpoB NC_012115.1 151663 155802 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 151663..155802 Nautilia profundicola AmH 7505271 YP_002606605.1 CDS rpoC NC_012115.1 155789 160291 D identified by match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000; match to protein family HMM TIGR02386; match to protein family HMM TIGR02388; DNA-directed RNA polymerase, beta' subunit 155789..160291 Nautilia profundicola AmH 7504420 YP_002606606.1 CDS rpsL NC_012115.1 160413 160796 D identified by match to protein family HMM PF00164; match to protein family HMM TIGR00981; 30S ribosomal protein S12 160413..160796 Nautilia profundicola AmH 7505414 YP_002606607.1 CDS rpsG NC_012115.1 161032 161499 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 161032..161499 Nautilia profundicola AmH 7504063 YP_002606608.1 CDS fusA NC_012115.1 161598 163679 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 161598..163679 Nautilia profundicola AmH 7505520 YP_002606609.1 CDS modD NC_012115.1 163895 164719 D identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR01334; ModD protein 163895..164719 Nautilia profundicola AmH 7504291 YP_002606610.1 CDS NAMH_0185 NC_012115.1 164706 165143 R identified by glimmer; putative; hypothetical protein complement(164706..165143) Nautilia profundicola AmH 7505136 YP_002606611.1 CDS NAMH_0187 NC_012115.1 165205 165600 R hypothetical protein complement(165205..165600) Nautilia profundicola AmH 7503852 YP_002606612.1 CDS NAMH_0188 NC_012115.1 165738 166040 D identified by glimmer; putative; hypothetical protein 165738..166040 Nautilia profundicola AmH 7504703 YP_002606613.1 CDS NAMH_0189 NC_012115.1 166066 166305 D identified by match to protein family HMM PF04325; hypothetical protein 166066..166305 Nautilia profundicola AmH 7504535 YP_002606614.1 CDS NAMH_0191 NC_012115.1 166380 167603 D identified by match to protein family HMM PF06354; hypothetical protein 166380..167603 Nautilia profundicola AmH 7505608 YP_002606615.1 CDS NAMH_0190 NC_012115.1 167596 168126 R identified by glimmer; putative; hypothetical protein complement(167596..168126) Nautilia profundicola AmH 7505318 YP_002606616.1 CDS NAMH_0192 NC_012115.1 168102 168503 R putative lipoprotein complement(168102..168503) Nautilia profundicola AmH 7504579 YP_002606617.1 CDS modA NC_012115.1 168618 169334 D identified by match to protein family HMM TIGR01256; molybdate ABC transporter substrate-binding protein 168618..169334 Nautilia profundicola AmH 7505219 YP_002606618.1 CDS NAMH_0194 NC_012115.1 169344 169718 D hypothetical protein 169344..169718 Nautilia profundicola AmH 7505510 YP_002606619.1 CDS modB NC_012115.1 169715 170389 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141; molybdate ABC transporter permease 169715..170389 Nautilia profundicola AmH 7504319 YP_002606620.1 CDS NAMH_0196 NC_012115.1 170386 171240 D identified by match to protein family HMM PF00005; ATPase 170386..171240 Nautilia profundicola AmH 7504505 YP_002606621.1 CDS NAMH_0197 NC_012115.1 171285 171944 D identified by glimmer; putative; hypothetical protein 171285..171944 Nautilia profundicola AmH 7504877 YP_002606622.1 CDS NAMH_0199 NC_012115.1 171941 172615 D identified by match to protein family HMM PF00528; molybdenum ABC transporter permease 171941..172615 Nautilia profundicola AmH 7504030 YP_002606623.1 CDS NAMH_0198 NC_012115.1 172607 173335 R identified by match to protein family HMM PF02562; PhoH family protein complement(172607..173335) Nautilia profundicola AmH 7504977 YP_002606624.1 CDS nadC NC_012115.1 173481 174299 R catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase complement(173481..174299) Nautilia profundicola AmH 7505227 YP_002606625.1 CDS nadA NC_012115.1 174419 175390 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(174419..175390) Nautilia profundicola AmH 7504558 YP_002606626.1 CDS NAMH_0202 NC_012115.1 175468 176076 D identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023; hypothetical protein 175468..176076 Nautilia profundicola AmH 7504740 YP_002606627.1 CDS folB NC_012115.1 176079 176435 D identified by match to protein family HMM PF02152; match to protein family HMM TIGR00526; dihydroneopterin aldolase 176079..176435 Nautilia profundicola AmH 7504975 YP_002606628.1 CDS NAMH_0204 NC_012115.1 176514 177182 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two-component regulator 176514..177182 Nautilia profundicola AmH 7505425 YP_002606629.1 CDS NAMH_0205 NC_012115.1 177184 177441 D identified by match to protein family HMM PF00037; ferredoxin 177184..177441 Nautilia profundicola AmH 7505287 YP_002606630.1 CDS NAMH_0206 NC_012115.1 177441 178907 D identified by match to protein family HMM PF02541; guanosine pentaphosphate phosphohydrolase gppa 177441..178907 Nautilia profundicola AmH 7505267 YP_002606631.1 CDS NAMH_0207 NC_012115.1 178904 179377 D putative lipoprotein 178904..179377 Nautilia profundicola AmH 7504240 YP_002606632.1 CDS NAMH_0208 NC_012115.1 179364 180491 D identified by match to protein family HMM PF01266; FAD dependent oxidoreductase 179364..180491 Nautilia profundicola AmH 7504514 YP_002606633.1 CDS NAMH_0209 NC_012115.1 180478 181245 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 180478..181245 Nautilia profundicola AmH 7503946 YP_002606634.1 CDS NAMH_0211 NC_012115.1 181232 181930 D identified by match to protein family HMM PF00005; high affinity branched-chain amino acid ABC transporter, ATP-binding protein 181232..181930 Nautilia profundicola AmH 7504958 YP_002606635.1 CDS NAMH_0210 NC_012115.1 181927 182808 R identified by match to protein family HMM PF00929; exonuclease complement(181927..182808) Nautilia profundicola AmH 7504845 YP_002606636.1 CDS NAMH_0212 NC_012115.1 182789 183451 R identified by glimmer; putative; hypothetical protein complement(182789..183451) Nautilia profundicola AmH 7504441 YP_002606637.1 CDS NAMH_0213 NC_012115.1 183444 184118 R putative transcriptional regulator, Fis family complement(183444..184118) Nautilia profundicola AmH 7505238 YP_002606638.1 CDS NAMH_0214 NC_012115.1 184651 185520 R hypothetical protein complement(184651..185520) Nautilia profundicola AmH 7505548 YP_002606639.1 CDS amt NC_012115.1 185564 186844 R identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter complement(185564..186844) Nautilia profundicola AmH 7504298 YP_002606640.1 CDS NAMH_0216 NC_012115.1 186834 187172 R identified by match to protein family HMM PF00543; nitrogen regulatory protein P-II complement(186834..187172) Nautilia profundicola AmH 7504218 YP_002606641.1 CDS NAMH_0217 NC_012115.1 187349 187678 D an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; hypothetical protein 187349..187678 Nautilia profundicola AmH 7504876 YP_002606642.1 CDS NAMH_0218 NC_012115.1 187865 188392 D an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; hypothetical protein 187865..188392 Nautilia profundicola AmH 7505537 YP_002606643.1 CDS NAMH_0219 NC_012115.1 188445 188738 D hypothetical protein 188445..188738 Nautilia profundicola AmH 7505265 YP_002606644.1 CDS NAMH_0220 NC_012115.1 188749 189111 D identified by glimmer; putative; hypothetical protein 188749..189111 Nautilia profundicola AmH 7503980 YP_002606645.1 CDS NAMH_0221 NC_012115.1 189120 190883 D invasion antigen B 189120..190883 Nautilia profundicola AmH 7505064 YP_002606646.1 CDS NAMH_0223 NC_012115.1 190911 191171 D hypothetical protein 190911..191171 Nautilia profundicola AmH 7504905 YP_002606647.1 CDS NAMH_0222 NC_012115.1 191168 191719 R hypothetical protein complement(191168..191719) Nautilia profundicola AmH 7505074 YP_002606648.1 CDS lys NC_012115.1 191810 193027 R identified by match to protein family HMM PF03435; saccharopine dehydrogenase complement(191810..193027) Nautilia profundicola AmH 7504147 YP_002606649.1 CDS lys NC_012115.1 193030 194226 R identified by match to protein family HMM PF03435; saccharopine dehydrogenase complement(193030..194226) Nautilia profundicola AmH 7505343 YP_002606650.1 CDS NAMH_0226 NC_012115.1 194327 195547 D identified by match to protein family HMM PF00015; match to protein family HMM TIGR00229; methyl-accepting chemotaxis sensory transducer 194327..195547 Nautilia profundicola AmH 7505281 YP_002606651.1 CDS NAMH_0227 NC_012115.1 195549 196436 D identified by match to protein family HMM PF00795; putative N-carbamoylputrescine amidohydrolase 195549..196436 Nautilia profundicola AmH 7504715 YP_002606652.1 CDS NAMH_0228 NC_012115.1 196445 198289 D identified by match to protein family HMM PF00497; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase/phosphodiesterase domain 1 196445..198289 Nautilia profundicola AmH 7504453 YP_002606653.1 CDS rpe NC_012115.1 198286 198927 D identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; ribulose-phosphate 3-epimerase 198286..198927 Nautilia profundicola AmH 7504862 YP_002606654.1 CDS NAMH_0230 NC_012115.1 198938 199237 D minor capsid protein 198938..199237 Nautilia profundicola AmH 7505313 YP_002606655.1 CDS NAMH_0231 NC_012115.1 199341 199556 D identified by glimmer; putative; hypothetical protein 199341..199556 Nautilia profundicola AmH 7504746 YP_002606656.1 CDS trpF NC_012115.1 199553 200155 D identified by match to protein family HMM PF00697; N-(5'phosphoribosyl)anthranilate isomerase 199553..200155 Nautilia profundicola AmH 7505504 YP_002606657.1 CDS NAMH_0233 NC_012115.1 200254 201549 D identified by match to protein family HMM PF05670; fibronectin/fibrinogen-binding protein 200254..201549 Nautilia profundicola AmH 7505061 YP_002606658.1 CDS NAMH_0234 NC_012115.1 201546 201785 D hypothetical protein 201546..201785 Nautilia profundicola AmH 7504664 YP_002606659.1 CDS cdsA NC_012115.1 201898 202635 D identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 201898..202635 Nautilia profundicola AmH 7504132 YP_002606660.1 CDS dxr NC_012115.1 202636 203736 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 202636..203736 Nautilia profundicola AmH 7504670 YP_002606661.1 CDS NAMH_0237 NC_012115.1 203717 204355 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD-superfamily hydrolase subfamily IA 203717..204355 Nautilia profundicola AmH 7504942 YP_002606662.1 CDS NAMH_0238 NC_012115.1 204516 205970 R identified by match to protein family HMM PF02386; K+ transporter Trk complement(204516..205970) Nautilia profundicola AmH 7505415 YP_002606663.1 CDS NAMH_0239 NC_012115.1 205952 207235 R identified by match to protein family HMM PF02254; putative Trk system potassium uptake protein TrkA complement(205952..207235) Nautilia profundicola AmH 7504557 YP_002606664.1 CDS NAMH_0240 NC_012115.1 207416 207973 D identified by match to protein family HMM PF01558; match to protein family HMM TIGR02175; pyruvate flavodoxin oxidoreductase subunit gamma 207416..207973 Nautilia profundicola AmH 7504552 YP_002606665.1 CDS porD NC_012115.1 207983 208387 D identified by match to protein family HMM PF00037; match to protein family HMM TIGR02179; pyruvate flavodoxin oxidoreductase subunit delta 207983..208387 Nautilia profundicola AmH 7505538 YP_002606666.1 CDS porA NC_012115.1 208399 209616 D identified by match to protein family HMM PF01855; pyruvate flavodoxin oxidoreductase subunit alpha 208399..209616 Nautilia profundicola AmH 7504443 YP_002606667.1 CDS NAMH_0243 NC_012115.1 209627 210580 D identified by match to protein family HMM PF02775; PorB subunit of pyruvate:flavodoxin oxidoreductase 209627..210580 Nautilia profundicola AmH 7503865 YP_002606668.1 CDS NAMH_0245 NC_012115.1 210713 212434 D identified by match to protein family HMM PF00654; voltage-gated chloride channel 210713..212434 Nautilia profundicola AmH 7505224 YP_002606669.1 CDS NAMH_0244 NC_012115.1 212431 213363 R identified by match to protein family HMM PF01544; putative Mg2+/Co2+ transport protein complement(212431..213363) Nautilia profundicola AmH 7504326 YP_002606670.1 CDS NAMH_0246 NC_012115.1 213404 213958 D identified by glimmer; putative; hypothetical protein 213404..213958 Nautilia profundicola AmH 7503931 YP_002606671.1 CDS NAMH_0247 NC_012115.1 213948 215552 D identified by match to protein family HMM PF00884; match to protein family HMM PF08019; sulfatase domain protein 213948..215552 Nautilia profundicola AmH 7504208 YP_002606672.1 CDS NAMH_0249 NC_012115.1 215549 215902 D identified by match to protein family HMM PF01219; diacylglycerol kinase 215549..215902 Nautilia profundicola AmH 7504131 YP_002606673.1 CDS NAMH_0248 NC_012115.1 215890 216972 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; histidine kinase complement(215890..216972) Nautilia profundicola AmH 7504985 YP_002606674.1 CDS NAMH_0250 NC_012115.1 217043 217708 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; response regulator receiver domain protein complement(217043..217708) Nautilia profundicola AmH 7504223 YP_002606675.1 CDS NAMH_0251 NC_012115.1 217910 218893 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 217910..218893 Nautilia profundicola AmH 7504680 YP_002606676.1 CDS rpsU NC_012115.1 218984 219196 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(218984..219196) Nautilia profundicola AmH 7504989 YP_002606677.1 CDS pyrG NC_012115.1 219384 221021 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 219384..221021 Nautilia profundicola AmH 7505409 YP_002606678.1 CDS recJ NC_012115.1 221025 222587 D identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 221025..222587 Nautilia profundicola AmH 7505341 YP_002606679.1 CDS NAMH_0255 NC_012115.1 222584 223045 D identified by match to protein family HMM PF00027; cyclic nucleotide-binding domain protein 222584..223045 Nautilia profundicola AmH 7504762 YP_002606680.1 CDS NAMH_0256 NC_012115.1 223105 223818 D identified by match to protein family HMM PF05430; hypothetical protein 223105..223818 Nautilia profundicola AmH 7504226 YP_002606681.1 CDS NAMH_0257 NC_012115.1 223849 224772 D identified by match to protein family HMM PF03150; cytochrome c551 peroxidase 223849..224772 Nautilia profundicola AmH 7504760 YP_002606682.1 CDS NAMH_0258 NC_012115.1 224769 226886 D identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase/phosphodiesterase 224769..226886 Nautilia profundicola AmH 7504186 YP_002606683.1 CDS NAMH_0259 NC_012115.1 227004 227330 R identified by match to protein family HMM PF02021; hypothetical protein complement(227004..227330) Nautilia profundicola AmH 7505214 YP_002606684.1 CDS NAMH_0260 NC_012115.1 227317 227682 R identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; thioesterase family protein complement(227317..227682) Nautilia profundicola AmH 7504048 YP_002606685.1 CDS NAMH_0262 NC_012115.1 227725 228837 D identified by match to protein family HMM PF03486; NAD(FAD)-utilizing dehydrogenase 227725..228837 Nautilia profundicola AmH 7505376 YP_002606686.1 CDS NAMH_0261 NC_012115.1 228807 229373 R identified by glimmer; putative; hypothetical protein complement(228807..229373) Nautilia profundicola AmH 7505606 YP_002606687.1 CDS NAMH_0263 NC_012115.1 229370 229876 R hypothetical protein complement(229370..229876) Nautilia profundicola AmH 7504928 YP_002606688.1 CDS NAMH_0264 NC_012115.1 229869 230738 R identified by glimmer; putative; hypothetical protein complement(229869..230738) Nautilia profundicola AmH 7504818 YP_002606689.1 CDS NAMH_0265 NC_012115.1 230729 231538 R identified by match to protein family HMM PF00589; match to protein family HMM PF02899; phage integrase complement(230729..231538) Nautilia profundicola AmH 7504611 YP_002606690.1 CDS NAMH_0266 NC_012115.1 231510 231908 R hypothetical protein complement(231510..231908) Nautilia profundicola AmH 7504368 YP_002606691.1 CDS miaB NC_012115.1 231962 233230 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(231962..233230) Nautilia profundicola AmH 7504678 YP_002606692.1 CDS NAMH_0268 NC_012115.1 233239 233469 R hypothetical protein complement(233239..233469) Nautilia profundicola AmH 7504873 YP_002606693.1 CDS nusA NC_012115.1 233622 234695 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 233622..234695 Nautilia profundicola AmH 7504144 YP_002606694.1 CDS NAMH_0271 NC_012115.1 234704 235660 D identified by match to protein family HMM PF04332; hypothetical protein 234704..235660 Nautilia profundicola AmH 7505314 YP_002606695.1 CDS murB NC_012115.1 235654 236427 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(235654..236427) Nautilia profundicola AmH 7505255 YP_002606696.1 CDS fliQ NC_012115.1 236431 236697 R with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ complement(236431..236697) Nautilia profundicola AmH 7504468 YP_002606697.1 CDS NAMH_0273 NC_012115.1 236687 237163 R identified by glimmer; putative; hypothetical protein complement(236687..237163) Nautilia profundicola AmH 7505286 YP_002606698.1 CDS NAMH_0274 NC_012115.1 237180 238073 R identified by match to protein family HMM PF02642; hypothetical protein complement(237180..238073) Nautilia profundicola AmH 7504302 YP_002606699.1 CDS NAMH_0275 NC_012115.1 238188 240551 D identified by match to protein family HMM PF00563; match to protein family HMM PF00990; ggdef family protein 238188..240551 Nautilia profundicola AmH 7504519 YP_002606700.1 CDS recA NC_012115.1 240630 241682 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 240630..241682 Nautilia profundicola AmH 7504948 YP_002606701.1 CDS eno NC_012115.1 241683 242948 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 241683..242948 Nautilia profundicola AmH 7504019 YP_002606702.1 CDS NAMH_0278 NC_012115.1 242986 243234 D hypothetical protein 242986..243234 Nautilia profundicola AmH 7505062 YP_002606703.1 CDS NAMH_0279 NC_012115.1 243231 243806 D hypothetical protein 243231..243806 Nautilia profundicola AmH 7505311 YP_002606704.1 CDS aroK NC_012115.1 243793 244296 D identified by match to protein family HMM PF01202; shikimate kinase 243793..244296 Nautilia profundicola AmH 7505357 YP_002606705.1 CDS NAMH_0281 NC_012115.1 244280 244465 D identified by glimmer; putative; hypothetical protein 244280..244465 Nautilia profundicola AmH 7505272 YP_002606706.1 CDS NAMH_0282 NC_012115.1 244632 245219 D identified by match to protein family HMM PF03167; DNA polymerase, bacteriophage-type 244632..245219 Nautilia profundicola AmH 7505202 YP_002606707.1 CDS NAMH_0283 NC_012115.1 245280 245570 D identified by glimmer; putative; hypothetical protein 245280..245570 Nautilia profundicola AmH 7504583 YP_002606708.1 CDS NAMH_0284 NC_012115.1 245571 246086 R identified by match to protein family HMM PF00551; phosphoribosylglycinamide formyltransferase complement(245571..246086) Nautilia profundicola AmH 7504069 YP_002606709.1 CDS NAMH_0285 NC_012115.1 246201 248264 D identified by glimmer; putative; hypothetical protein 246201..248264 Nautilia profundicola AmH 7504709 YP_002606710.1 CDS NAMH_0287 NC_012115.1 248535 248888 R an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; hypothetical protein complement(248535..248888) Nautilia profundicola AmH 7505166 YP_002606711.1 CDS NAMH_0288 NC_012115.1 248872 248997 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; transformation system protein complement(248872..248997) Nautilia profundicola AmH 7504949 YP_002606712.1 CDS murD NC_012115.1 248994 250172 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(248994..250172) Nautilia profundicola AmH 7504461 YP_002606713.1 CDS NAMH_0290 NC_012115.1 250169 251071 R identified by match to protein family HMM PF01343; PfaP complement(250169..251071) Nautilia profundicola AmH 7504804 YP_002606714.1 CDS mraY NC_012115.1 251080 252135 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(251080..252135) Nautilia profundicola AmH 7505466 YP_002606715.1 CDS fabG NC_012115.1 252203 252946 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 252203..252946 Nautilia profundicola AmH 7504365 YP_002606716.1 CDS acpP NC_012115.1 253008 253241 D identified by match to protein family HMM PF00550; match to protein family HMM TIGR00517; acyl carrier protein 253008..253241 Nautilia profundicola AmH 7504348 YP_002606717.1 CDS NAMH_0294 NC_012115.1 253319 254539 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 253319..254539 Nautilia profundicola AmH 7505491 YP_002606718.1 CDS accA NC_012115.1 254549 255484 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 254549..255484 Nautilia profundicola AmH 7504623 YP_002606719.1 CDS uvrA NC_012115.1 255705 258515 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(255705..258515) Nautilia profundicola AmH 7504844 YP_002606720.1 CDS NAMH_0297 NC_012115.1 258595 259050 R identified by glimmer; putative; hypothetical protein complement(258595..259050) Nautilia profundicola AmH 7505582 YP_002606721.1 CDS NAMH_0298 NC_012115.1 259050 259790 R identified by match to protein family HMM PF01925; hypothetical protein complement(259050..259790) Nautilia profundicola AmH 7505467 YP_002606722.1 CDS NAMH_0299 NC_012115.1 259851 260252 D hypothetical protein 259851..260252 Nautilia profundicola AmH 7504591 YP_002606723.1 CDS NAMH_0300 NC_012115.1 260252 260563 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 260252..260563 Nautilia profundicola AmH 7505094 YP_002606724.1 CDS NAMH_0301 NC_012115.1 260601 261362 D hypothetical protein 260601..261362 Nautilia profundicola AmH 7504720 YP_002606725.1 CDS gidA NC_012115.1 261349 263220 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 261349..263220 Nautilia profundicola AmH 7504607 YP_002606726.1 CDS NAMH_0303 NC_012115.1 263263 263541 D identified by glimmer; putative; hypothetical protein 263263..263541 Nautilia profundicola AmH 7505106 YP_002606727.1 CDS NAMH_0305 NC_012115.1 263553 263696 D identified by glimmer; putative; hypothetical protein 263553..263696 Nautilia profundicola AmH 7504915 YP_002606728.1 CDS NAMH_0304 NC_012115.1 263668 264429 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensory trasnduction histidine kinase complement(263668..264429) Nautilia profundicola AmH 7504998 YP_002606729.1 CDS phoB NC_012115.1 264471 265109 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM PF08279; DNA-binding response regulator PhoB complement(264471..265109) Nautilia profundicola AmH 7503901 YP_002606730.1 CDS NAMH_0307 NC_012115.1 265172 265732 R putative phosphate transport system protein PhoU complement(265172..265732) Nautilia profundicola AmH 7504001 YP_002606731.1 CDS pstS NC_012115.1 265858 266856 D identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975; phosphate ABC transporter substrate-binding protein 265858..266856 Nautilia profundicola AmH 7505401 YP_002606732.1 CDS pstC NC_012115.1 266912 267991 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease 266912..267991 Nautilia profundicola AmH 7504520 YP_002606733.1 CDS pstA NC_012115.1 267988 268794 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease 267988..268794 Nautilia profundicola AmH 7504832 YP_002606734.1 CDS pstB NC_012115.1 268815 269615 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR00972; phosphate ABC transporter ATP-binding protein 268815..269615 Nautilia profundicola AmH 7503892 YP_002606735.1 CDS NAMH_0312 NC_012115.1 269694 271313 D identified by match to protein family HMM PF01384; phosphate transporter 269694..271313 Nautilia profundicola AmH 7505393 YP_002606736.1 CDS fmt NC_012115.1 272041 272925 D identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460; methionyl-tRNA formyltransferase 272041..272925 Nautilia profundicola AmH 7505474 YP_002606737.1 CDS NAMH_0314 NC_012115.1 272941 273573 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 272941..273573 Nautilia profundicola AmH 7505232 YP_002606738.1 CDS NAMH_0315 NC_012115.1 273570 274358 D identified by match to protein family HMM PF01656; cobyrinic Acid a,c-diamide synthase 273570..274358 Nautilia profundicola AmH 7504878 YP_002606739.1 CDS NAMH_0316 NC_012115.1 274355 275188 D identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; stage 0 sporulation protein j 274355..275188 Nautilia profundicola AmH 7504274 YP_002606740.1 CDS NAMH_0317 NC_012115.1 275222 275647 D identified by match to protein family HMM PF00430; putative H+-transporting two-sector ATPase, B/B' subunit 275222..275647 Nautilia profundicola AmH 7505541 YP_002606741.1 CDS NAMH_0318 NC_012115.1 275644 276147 D identified by match to protein family HMM PF00430; ATP synthase B chain 275644..276147 Nautilia profundicola AmH 7503880 YP_002606742.1 CDS NAMH_0319 NC_012115.1 276147 276662 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 276147..276662 Nautilia profundicola AmH 7503886 YP_002606743.1 CDS atpA NC_012115.1 276678 278177 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 276678..278177 Nautilia profundicola AmH 7505597 YP_002606744.1 CDS atpG NC_012115.1 278181 279059 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 278181..279059 Nautilia profundicola AmH 7504658 YP_002606745.1 CDS atpD NC_012115.1 279069 280475 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 279069..280475 Nautilia profundicola AmH 7504737 YP_002606746.1 CDS atpC NC_012115.1 280485 280865 D part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 280485..280865 Nautilia profundicola AmH 7504665 YP_002606747.1 CDS NAMH_0324 NC_012115.1 280846 281394 D identified by match to protein family HMM PF01618; exbb\tolq family transport protein 280846..281394 Nautilia profundicola AmH 7504390 YP_002606748.1 CDS NAMH_0325 NC_012115.1 281391 281768 D identified by match to protein family HMM PF02472; ExbD\tolR family transport protein 281391..281768 Nautilia profundicola AmH 7503990 YP_002606749.1 CDS NAMH_0326 NC_012115.1 281810 282451 D identified by glimmer; putative; hypothetical protein 281810..282451 Nautilia profundicola AmH 7504807 YP_002606750.1 CDS tolB NC_012115.1 282444 283604 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 282444..283604 Nautilia profundicola AmH 7504824 YP_002606751.1 CDS NAMH_0328 NC_012115.1 283620 284207 D identified by match to protein family HMM PF00691; lipoprotein 283620..284207 Nautilia profundicola AmH 7504373 YP_002606752.1 CDS NAMH_0329 NC_012115.1 284239 285132 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; TPR repeat protein 284239..285132 Nautilia profundicola AmH 7504361 YP_002606753.1 CDS NAMH_0330 NC_012115.1 285170 285655 D identified by match to protein family HMM PF00254; fkbp-type peptidyl-prolyl cis-trans isomerase slyd 285170..285655 Nautilia profundicola AmH 7503966 YP_002606754.1 CDS fabD NC_012115.1 285843 286754 D identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 285843..286754 Nautilia profundicola AmH 7504855 YP_002606755.1 CDS NAMH_0332 NC_012115.1 286783 287523 D identified by match to protein family HMM PF00795; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 286783..287523 Nautilia profundicola AmH 7504447 YP_002606756.1 CDS mtnN NC_012115.1 287533 288222 D enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 287533..288222 Nautilia profundicola AmH 7504931 YP_002606757.1 CDS NAMH_0334 NC_012115.1 288234 289427 D identified by glimmer; putative; hypothetical protein 288234..289427 Nautilia profundicola AmH 7505364 YP_002606758.1 CDS NAMH_0335 NC_012115.1 289424 290203 D identified by match to protein family HMM PF01171; PP-loop family protein 289424..290203 Nautilia profundicola AmH 7504339 YP_002606759.1 CDS mnmA NC_012115.1 290203 291228 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 290203..291228 Nautilia profundicola AmH 7503994 YP_002606760.1 CDS NAMH_0337 NC_012115.1 291360 292286 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 291360..292286 Nautilia profundicola AmH 7503978 YP_002606761.1 CDS NAMH_0338 NC_012115.1 292286 292840 D identified by match to protein family HMM PF01205; thymidylate synthase 292286..292840 Nautilia profundicola AmH 7504484 YP_002606762.1 CDS NAMH_0339 NC_012115.1 292837 293469 D identified by match to protein family HMM PF00445; ribonuclease T2 family 292837..293469 Nautilia profundicola AmH 7504521 YP_002606763.1 CDS NAMH_0340 NC_012115.1 293476 294777 R identified by match to protein family HMM PF00324; match to protein family HMM PF03845; amino acid transporter complement(293476..294777) Nautilia profundicola AmH 7504092 YP_002606764.1 CDS NAMH_0341 NC_012115.1 294813 295304 R identified by match to protein family HMM PF04608; phosphatidylglycerophosphatase A complement(294813..295304) Nautilia profundicola AmH 7504986 YP_002606765.1 CDS NAMH_0342 NC_012115.1 295376 296551 R sulfate adenylyltransferase complement(295376..296551) Nautilia profundicola AmH 7505563 YP_002606766.1 CDS NAMH_0343 NC_012115.1 296529 297392 R identified by match to protein family HMM PF00072; response regulator receiver domain protein complement(296529..297392) Nautilia profundicola AmH 7504459 YP_002606767.1 CDS ispDF NC_012115.1 297373 298482 R bifunctional enzyme involved in formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate and 2-C-methyl-D-erythritol 2,4-cyclodiphosphate and CMP from 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; binds divalent cations; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein complement(297373..298482) Nautilia profundicola AmH 7503885 YP_002606768.1 CDS NAMH_0345 NC_012115.1 298560 299798 D identified by match to protein family HMM PF00188; putative lipoprotein 298560..299798 Nautilia profundicola AmH 7505047 YP_002606769.1 CDS thiC NC_012115.1 299860 301245 D identified by match to protein family HMM PF01964; match to protein family HMM TIGR00190; thiamine biosynthesis protein ThiC 299860..301245 Nautilia profundicola AmH 7505527 YP_002606770.1 CDS NAMH_0347 NC_012115.1 301307 302422 D ATP/GTP-binding protein 301307..302422 Nautilia profundicola AmH 7505065 YP_002606771.1 CDS NAMH_0348 NC_012115.1 302789 303310 R putative annexin complement(302789..303310) Nautilia profundicola AmH 7504206 YP_002606772.1 CDS NAMH_0349 NC_012115.1 303347 304198 R identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; hypothetical protein complement(303347..304198) Nautilia profundicola AmH 7503863 YP_002606773.1 CDS NAMH_0351 NC_012115.1 304322 304915 D hypothetical protein 304322..304915 Nautilia profundicola AmH 7504777 YP_002606774.1 CDS NAMH_0350 NC_012115.1 304902 305771 R methyltransferase complement(304902..305771) Nautilia profundicola AmH 7505121 YP_002606775.1 CDS NAMH_0352 NC_012115.1 305771 306334 R hypothetical protein complement(305771..306334) Nautilia profundicola AmH 7503888 YP_002606776.1 CDS NAMH_0353 NC_012115.1 306393 309029 D identified by match to protein family HMM PF00580; putative recombination protein RecB 306393..309029 Nautilia profundicola AmH 7504007 YP_002606777.1 CDS NAMH_0354 NC_012115.1 309031 309189 D identified by glimmer; putative; hypothetical protein 309031..309189 Nautilia profundicola AmH 7505004 YP_002606778.1 CDS lpxB NC_012115.1 309182 310216 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; ipid-A-disaccharide synthase 309182..310216 Nautilia profundicola AmH 7504683 YP_002606779.1 CDS NAMH_0356 NC_012115.1 310279 312234 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer 310279..312234 Nautilia profundicola AmH 7504163 YP_002606780.1 CDS greA NC_012115.1 312306 312794 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 312306..312794 Nautilia profundicola AmH 7505385 YP_002606781.1 CDS dut NC_012115.1 312836 313264 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 312836..313264 Nautilia profundicola AmH 7505296 YP_002606782.1 CDS argC NC_012115.1 313302 314279 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 313302..314279 Nautilia profundicola AmH 7505207 YP_002606783.1 CDS NAMH_0360 NC_012115.1 314295 315011 D identified by match to protein family HMM PF00149; metallophosphoesterase 314295..315011 Nautilia profundicola AmH 7504235 YP_002606784.1 CDS NAMH_0361 NC_012115.1 315001 315951 D identified by match to protein family HMM PF00072; match to protein family HMM PF01584; chemotaxis protein 315001..315951 Nautilia profundicola AmH 7504157 YP_002606785.1 CDS NAMH_0362 NC_012115.1 315970 318474 D identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; chemotaxis protein CheA 315970..318474 Nautilia profundicola AmH 7504674 YP_002606786.1 CDS NAMH_0364 NC_012115.1 318484 319002 D identified by match to protein family HMM PF01584; purine-binding chemotaxis protein chew 318484..319002 Nautilia profundicola AmH 7504951 YP_002606787.1 CDS speA NC_012115.1 318999 320825 R catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase complement(318999..320825) Nautilia profundicola AmH 7505299 YP_002606788.1 CDS hisS NC_012115.1 320851 322011 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(320851..322011) Nautilia profundicola AmH 7504717 YP_002606789.1 CDS NAMH_0366 NC_012115.1 322039 322857 R identified by glimmer; putative; hypothetical protein complement(322039..322857) Nautilia profundicola AmH 7505139 YP_002606790.1 CDS NAMH_0367 NC_012115.1 322883 323671 D identified by match to protein family HMM PF00149; metallophosphoesterase 322883..323671 Nautilia profundicola AmH 7505503 YP_002606791.1 CDS NAMH_0368 NC_012115.1 323661 324284 D identified by match to protein family HMM PF00633; match to protein family HMM PF00730; 3-methyladenine DNA glycosylase 323661..324284 Nautilia profundicola AmH 7505133 YP_002606792.1 CDS NAMH_0369 NC_012115.1 324286 324849 D identified by match to protein family HMM PF01863; zinc metalloprotease 324286..324849 Nautilia profundicola AmH 7503940 YP_002606793.1 CDS NAMH_0370 NC_012115.1 324858 326459 D identified by match to protein family HMM PF02646; DNA recombination protein RmuC family protein 324858..326459 Nautilia profundicola AmH 7505236 YP_002606794.1 CDS NAMH_0371 NC_012115.1 326721 327935 D identified by glimmer; putative; hypothetical protein 326721..327935 Nautilia profundicola AmH 7505522 YP_002606795.1 CDS NAMH_0372 NC_012115.1 327936 330554 R has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I complement(327936..330554) Nautilia profundicola AmH 7504273 YP_002606796.1 CDS NAMH_0374 NC_012115.1 330605 332746 D identified by glimmer; putative; hypothetical protein 330605..332746 Nautilia profundicola AmH 7504212 YP_002606797.1 CDS NAMH_0373 NC_012115.1 332741 333283 R molybdopterin-guanine dinucleotide biosynthesis protein A complement(332741..333283) Nautilia profundicola AmH 7504566 YP_002606798.1 CDS moaC NC_012115.1 333293 333760 R MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC complement(333293..333760) Nautilia profundicola AmH 7504317 YP_002606799.1 CDS NAMH_0376 NC_012115.1 333991 334134 R identified by glimmer; putative; hypothetical protein complement(333991..334134) Nautilia profundicola AmH 7505602 YP_002606800.1 CDS NAMH_0377 NC_012115.1 334121 334474 R thiamine biosynthesis protein ThiI complement(334121..334474) Nautilia profundicola AmH 7504430 YP_002606801.1 CDS NAMH_0378 NC_012115.1 334467 335204 R identified by match to protein family HMM PF01925; conserved hypothetical membrane protein, DUF81 family complement(334467..335204) Nautilia profundicola AmH 7505276 YP_002606802.1 CDS NAMH_0379 NC_012115.1 335225 335578 R hypothetical protein complement(335225..335578) Nautilia profundicola AmH 7504202 YP_002606803.1 CDS NAMH_0380 NC_012115.1 335639 338710 R identified by match to protein family HMM PF00873; RND transporter, Hydrophobe/Amphiphile Efflux-1 (HAE1) and Heavy Metal Efflux (HME) families, permease protein complement(335639..338710) Nautilia profundicola AmH 7504059 YP_002606804.1 CDS NAMH_0381 NC_012115.1 338754 339833 R identified by match to protein family HMM TIGR01730; efflux transporter, RND family, MFP subunit complement(338754..339833) Nautilia profundicola AmH 7505335 YP_002606805.1 CDS NAMH_0382 NC_012115.1 339830 341095 R identified by glimmer; putative; hypothetical protein complement(339830..341095) Nautilia profundicola AmH 7504280 YP_002606806.1 CDS NAMH_0383 NC_012115.1 341092 341652 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(341092..341652) Nautilia profundicola AmH 7505105 YP_002606807.1 CDS NAMH_0385 NC_012115.1 341730 342317 D identified by glimmer; putative; hypothetical protein 341730..342317 Nautilia profundicola AmH 7503874 YP_002606808.1 CDS NAMH_0384 NC_012115.1 342314 343117 R identified by match to protein family HMM PF04305; hypothetical protein complement(342314..343117) Nautilia profundicola AmH 7504592 YP_002606809.1 CDS moaA NC_012115.1 343211 344167 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 343211..344167 Nautilia profundicola AmH 7505367 YP_002606810.1 CDS NAMH_0387 NC_012115.1 344265 345059 D identified by match to protein family HMM PF02146; transcriptional regulator, Sir2 family 344265..345059 Nautilia profundicola AmH 7504403 YP_002606811.1 CDS NAMH_0388 NC_012115.1 345069 345455 D identified by glimmer; putative; hypothetical protein 345069..345455 Nautilia profundicola AmH 7504471 YP_002606812.1 CDS NAMH_0389 NC_012115.1 345452 345808 D identified by match to protein family HMM PF03674; cDNA sequence 345452..345808 Nautilia profundicola AmH 7505228 YP_002606813.1 CDS NAMH_0390 NC_012115.1 345859 346518 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 345859..346518 Nautilia profundicola AmH 7505586 YP_002606814.1 CDS NAMH_0392 NC_012115.1 346508 347635 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; histidine kinase 346508..347635 Nautilia profundicola AmH 7504306 YP_002606815.1 CDS NAMH_0391 NC_012115.1 347628 347930 R identified by match to protein family HMM PF01022; transcriptional regulator, ArsR family complement(347628..347930) Nautilia profundicola AmH 7504869 YP_002606816.1 CDS NAMH_0393 NC_012115.1 347933 348943 R identified by match to protein family HMM PF03595; match to protein family HMM TIGR00816; C4-Dicarboxylate transporter complement(347933..348943) Nautilia profundicola AmH 7505316 YP_002606817.1 CDS NAMH_0394 NC_012115.1 349079 350008 D hypothetical protein 349079..350008 Nautilia profundicola AmH 7504239 YP_002606818.1 CDS NAMH_0395 NC_012115.1 350098 350862 D hypothetical protein 350098..350862 Nautilia profundicola AmH 7503830 YP_002606819.1 CDS NAMH_0396 NC_012115.1 350920 351525 D hypothetical protein 350920..351525 Nautilia profundicola AmH 7504569 YP_002606820.1 CDS amt NC_012115.1 351534 352706 R identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter complement(351534..352706) Nautilia profundicola AmH 7504916 YP_002606821.1 CDS NAMH_0398 NC_012115.1 352747 353085 R identified by match to protein family HMM PF00543; nitrogen regulatory protein P-II complement(352747..353085) Nautilia profundicola AmH 7504159 YP_002606822.1 CDS NAMH_0400 NC_012115.1 353180 353452 D hypothetical protein 353180..353452 Nautilia profundicola AmH 7504056 YP_002606823.1 CDS purT NC_012115.1 353431 354600 R non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 complement(353431..354600) Nautilia profundicola AmH 7504920 YP_002606824.1 CDS NAMH_0401 NC_012115.1 354705 354923 D an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF04023; hypothetical protein 354705..354923 Nautilia profundicola AmH 7505203 YP_002606825.1 CDS feoB NC_012115.1 354966 357026 D identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; match to protein family HMM TIGR00650; ferrous iron transport protein B 354966..357026 Nautilia profundicola AmH 7505043 YP_002606826.1 CDS NAMH_0403 NC_012115.1 357159 359597 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 357159..359597 Nautilia profundicola AmH 7505020 YP_002606827.1 CDS nrdF NC_012115.1 359662 360702 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 359662..360702 Nautilia profundicola AmH 7503897 YP_002606828.1 CDS NAMH_0406 NC_012115.1 360692 361108 D identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein 360692..361108 Nautilia profundicola AmH 7504575 YP_002606829.1 CDS NAMH_0405 NC_012115.1 361102 361722 R identified by glimmer; putative; hypothetical protein complement(361102..361722) Nautilia profundicola AmH 7504861 YP_002606830.1 CDS NAMH_0407 NC_012115.1 361774 362331 D hypothetical protein 361774..362331 Nautilia profundicola AmH 7504002 YP_002606831.1 CDS NAMH_0408 NC_012115.1 362359 362928 D identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase domain containing protein 1 362359..362928 Nautilia profundicola AmH 7505070 YP_002606832.1 CDS NAMH_0409 NC_012115.1 362943 363644 D identified by match to protein family HMM PF04055; radical SAM domain protein 362943..363644 Nautilia profundicola AmH 7504301 YP_002606833.1 CDS NAMH_0410 NC_012115.1 364182 364766 D 6-pyruvoyl tetrahydrobiopterin synthase 364182..364766 Nautilia profundicola AmH 7503855 YP_002606834.1 CDS NAMH_0411 NC_012115.1 364810 365556 D identified by match to protein family HMM TIGR00703; hypothetical protein 364810..365556 Nautilia profundicola AmH 7504790 YP_002606835.1 CDS NAMH_0412 NC_012115.1 365566 366279 D hypothetical protein 365566..366279 Nautilia profundicola AmH 7505396 YP_002606836.1 CDS NAMH_0413 NC_012115.1 366281 366667 D identified by match to protein family HMM PF02579; putative dinitrogenase iron-molybdenum cofactor 366281..366667 Nautilia profundicola AmH 7505550 YP_002606837.1 CDS NAMH_0415 NC_012115.1 366664 367029 D identified by match to protein family HMM PF02579; putative dinitrogenase iron-molybdenum cofactor 366664..367029 Nautilia profundicola AmH 7505010 YP_002606838.1 CDS NAMH_0414 NC_012115.1 366998 367399 R identified by match to protein family HMM PF01451; arsenate reductase complement(366998..367399) Nautilia profundicola AmH 7504399 YP_002606839.1 CDS NAMH_0417 NC_012115.1 367725 368339 D identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427; hypothetical protein 367725..368339 Nautilia profundicola AmH 7505156 YP_002606840.1 CDS NAMH_0418 NC_012115.1 368402 369523 D identified by match to protein family HMM PF00691; match to protein family HMM PF02412; thrombospondin type 3 repeat:OmpA/MotB 368402..369523 Nautilia profundicola AmH 7504404 YP_002606841.1 CDS NAMH_0419 NC_012115.1 369598 370494 D hypothetical protein 369598..370494 Nautilia profundicola AmH 7504357 YP_002606842.1 CDS rplT NC_012115.1 370821 371171 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(370821..371171) Nautilia profundicola AmH 7505536 YP_002606843.1 CDS rpmI NC_012115.1 371264 371458 R identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; ribosomal protein L35 complement(371264..371458) Nautilia profundicola AmH 7504517 YP_002606844.1 CDS NAMH_0423 NC_012115.1 371551 372363 D identified by match to protein family HMM PF00571; match to protein family HMM PF00990; CBS domain pair protein 371551..372363 Nautilia profundicola AmH 7505254 YP_002606845.1 CDS NAMH_0422 NC_012115.1 372346 373311 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III complement(372346..373311) Nautilia profundicola AmH 7505422 YP_002606846.1 CDS plsX NC_012115.1 373553 374293 R an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02504; match to protein family HMM TIGR00182; fatty acid/phospholipid synthesis protein PlsX complement(373553..374293) Nautilia profundicola AmH 7505346 YP_002606847.1 CDS rpmF NC_012115.1 374293 374442 R identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; ribosomal protein L32 complement(374293..374442) Nautilia profundicola AmH 7505256 YP_002606848.1 CDS NAMH_0426 NC_012115.1 374452 374781 R hypothetical protein complement(374452..374781) Nautilia profundicola AmH 7504286 YP_002606849.1 CDS NAMH_0427 NC_012115.1 375080 375196 R an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; nucleoside diphosphate kinase complement(375080..375196) Nautilia profundicola AmH 7503951 YP_002606850.1 CDS NAMH_0428 NC_012115.1 375267 375539 R identified by match to protein family HMM PF00037; 4Fe-4S ferredoxin, iron-sulfur binding complement(375267..375539) Nautilia profundicola AmH 7504026 YP_002606851.1 CDS NAMH_0433 NC_012115.1 376238 377656 R identified by glimmer; putative; hypothetical protein complement(376238..377656) Nautilia profundicola AmH 7505198 YP_002606852.1 CDS NAMH_0434 NC_012115.1 377653 378393 R an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; von Willebrand factor, type A complement(377653..378393) Nautilia profundicola AmH 7505230 YP_002606853.1 CDS NAMH_0435 NC_012115.1 378390 379187 R an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; putative von Willebrand factor, type A complement(378390..379187) Nautilia profundicola AmH 7504885 YP_002606854.1 CDS NAMH_0436 NC_012115.1 379175 380041 R identified by match to protein family HMM PF00092; von Willebrand factor, type A complement(379175..380041) Nautilia profundicola AmH 7504561 YP_002606855.1 CDS NAMH_0437 NC_012115.1 380038 380403 R hypothetical protein complement(380038..380403) Nautilia profundicola AmH 7505426 YP_002606856.1 CDS NAMH_0438 NC_012115.1 380406 381209 R hypothetical protein complement(380406..381209) Nautilia profundicola AmH 7504969 YP_002606857.1 CDS NAMH_0439 NC_012115.1 381206 382168 R identified by match to protein family HMM PF07726; match to protein family HMM PF07728; ATPase associated with various cellular activities, AAA_3 complement(381206..382168) Nautilia profundicola AmH 7504385 YP_002606858.1 CDS NAMH_0440 NC_012115.1 382291 382725 D identified by match to protein family HMM PF05433; outer membrane lipoprotein 382291..382725 Nautilia profundicola AmH 7505447 YP_002606859.1 CDS NAMH_0442 NC_012115.1 382722 384890 D hypothetical protein 382722..384890 Nautilia profundicola AmH 7504594 YP_002606860.1 CDS NAMH_0441 NC_012115.1 384873 386045 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; mcp-domain signal transduction protein complement(384873..386045) Nautilia profundicola AmH 7504434 YP_002606861.1 CDS NAMH_0443 NC_012115.1 386045 386323 R hypothetical protein complement(386045..386323) Nautilia profundicola AmH 7505279 YP_002606862.1 CDS NAMH_0444 NC_012115.1 386326 387861 R identified by match to protein family HMM PF00072; putative response regulator receiver domain protein complement(386326..387861) Nautilia profundicola AmH 7505546 YP_002606863.1 CDS NAMH_0445 NC_012115.1 388007 388753 D identified by match to protein family HMM PF07605; hypothetical protein 388007..388753 Nautilia profundicola AmH 7504529 YP_002606864.1 CDS gap NC_012115.1 388820 389839 R identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I complement(388820..389839) Nautilia profundicola AmH 7504281 YP_002606865.1 CDS NAMH_0447 NC_012115.1 389936 391855 D identified by match to protein family HMM PF03190; thymidylate kinase 389936..391855 Nautilia profundicola AmH 7504210 YP_002606866.1 CDS NAMH_0448 NC_012115.1 391921 392385 R desulfoferrodoxin complement(391921..392385) Nautilia profundicola AmH 7504375 YP_002606867.1 CDS NAMH_0449 NC_012115.1 392440 393534 R identified by match to protein family HMM PF03600; inner membrane protein YbiR complement(392440..393534) Nautilia profundicola AmH 7504732 YP_002606868.1 CDS luxS NC_012115.1 393531 394064 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(393531..394064) Nautilia profundicola AmH 7503961 YP_002606869.1 CDS rpsB NC_012115.1 394334 395173 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 394334..395173 Nautilia profundicola AmH 7504819 YP_002606870.1 CDS tsf NC_012115.1 395175 396098 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 395175..396098 Nautilia profundicola AmH 7505220 YP_002606871.1 CDS NAMH_0453 NC_012115.1 396878 397525 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 396878..397525 Nautilia profundicola AmH 7505301 YP_002606872.1 CDS fliR NC_012115.1 397512 398279 D FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 397512..398279 Nautilia profundicola AmH 7504546 YP_002606873.1 CDS NAMH_0454 NC_012115.1 398269 398838 R edta-resistant nuclease complement(398269..398838) Nautilia profundicola AmH 7505502 YP_002606874.1 CDS NAMH_0456 NC_012115.1 398837 400495 D hypothetical protein 398837..400495 Nautilia profundicola AmH 7505534 YP_002606875.1 CDS NAMH_0457 NC_012115.1 400497 401123 D identified by match to protein family HMM PF00625; guanylate kinase 400497..401123 Nautilia profundicola AmH 7503823 YP_002606876.1 CDS argS NC_012115.1 401120 402718 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 401120..402718 Nautilia profundicola AmH 7505514 YP_002606877.1 CDS NAMH_0460 NC_012115.1 402739 403167 D identified by match to protein family HMM PF04463; YbbK 402739..403167 Nautilia profundicola AmH 7505018 YP_002606878.1 CDS NAMH_0459 NC_012115.1 403156 403482 R identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; iojap-related protein complement(403156..403482) Nautilia profundicola AmH 7503862 YP_002606879.1 CDS nadD NC_012115.1 403460 403996 R identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482; nicotinate (nicotinamide) nucleotide adenylyltransferase complement(403460..403996) Nautilia profundicola AmH 7504979 YP_002606880.1 CDS gap NC_012115.1 404051 405028 D identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I 404051..405028 Nautilia profundicola AmH 7504472 YP_002606881.1 CDS pgk NC_012115.1 405236 406432 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 405236..406432 Nautilia profundicola AmH 7504867 YP_002606882.1 CDS tpiA NC_012115.1 406429 407124 D identified by match to protein family HMM PF00121; match to protein family HMM TIGR00419; triosephosphate isomerase 406429..407124 Nautilia profundicola AmH 7504074 YP_002606883.1 CDS NAMH_0465 NC_012115.1 407124 407903 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 407124..407903 Nautilia profundicola AmH 7504000 YP_002606884.1 CDS NAMH_0466 NC_012115.1 408286 409398 D major outer membrane protein 408286..409398 Nautilia profundicola AmH 7504209 YP_002606885.1 CDS NAMH_0467 NC_012115.1 409594 410229 R identified by match to protein family HMM PF00027; putative transcriptional regulator, Crp/Fnr family complement(409594..410229) Nautilia profundicola AmH 7505278 YP_002606886.1 CDS NAMH_0468 NC_012115.1 410229 411482 R catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase complement(410229..411482) Nautilia profundicola AmH 7504960 YP_002606887.1 CDS NAMH_0469 NC_012115.1 411475 412686 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(411475..412686) Nautilia profundicola AmH 7505413 YP_002606888.1 CDS NAMH_0470 NC_012115.1 412683 413453 R hypothetical protein complement(412683..413453) Nautilia profundicola AmH 7505430 YP_002606889.1 CDS NAMH_0471 NC_012115.1 413450 414268 R hypothetical protein complement(413450..414268) Nautilia profundicola AmH 7505327 YP_002606890.1 CDS NAMH_0472 NC_012115.1 414255 414920 R identified by match to protein family HMM PF00588; match to protein family HMM PF08032; 23S rRNA methyltransferase complement(414255..414920) Nautilia profundicola AmH 7504648 YP_002606891.1 CDS metK NC_012115.1 415071 416219 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(415071..416219) Nautilia profundicola AmH 7504710 YP_002606892.1 CDS NAMH_0474 NC_012115.1 416329 416592 R identified by glimmer; putative; hypothetical protein complement(416329..416592) Nautilia profundicola AmH 7504181 YP_002606893.1 CDS metE NC_012115.1 416592 418847 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase complement(416592..418847) Nautilia profundicola AmH 7504277 YP_002606894.1 CDS NAMH_0476 NC_012115.1 418941 420017 R hypothetical protein complement(418941..420017) Nautilia profundicola AmH 7504307 YP_002606895.1 CDS NAMH_0477 NC_012115.1 420014 420646 R identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758; uracil-DNA glycosylase complement(420014..420646) Nautilia profundicola AmH 7505356 YP_002606896.1 CDS NAMH_0478 NC_012115.1 420624 422111 R identified by match to protein family HMM PF00924; MscS Mechanosensitive ion channel complement(420624..422111) Nautilia profundicola AmH 7504750 YP_002606897.1 CDS aroB NC_012115.1 422108 423133 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(422108..423133) Nautilia profundicola AmH 7505125 YP_002606898.1 CDS NAMH_0480 NC_012115.1 423142 424530 R identified by match to protein family HMM PF02080; putative TrkA-C complement(423142..424530) Nautilia profundicola AmH 7504739 YP_002606899.1 CDS tgt NC_012115.1 424610 425746 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 424610..425746 Nautilia profundicola AmH 7504616 YP_002606900.1 CDS NAMH_0481 NC_012115.1 425710 426819 R identified by match to protein family HMM PF07238; type IV pilus assembly protein PilZ complement(425710..426819) Nautilia profundicola AmH 7505312 YP_002606901.1 CDS NAMH_0483 NC_012115.1 426820 427668 R putative lipoprotein complement(426820..427668) Nautilia profundicola AmH 7505554 YP_002606902.1 CDS NAMH_0484 NC_012115.1 427680 428258 R identified by match to protein family HMM PF03602; N6-adenine-specific methylase complement(427680..428258) Nautilia profundicola AmH 7504898 YP_002606903.1 CDS NAMH_0485 NC_012115.1 428245 428535 R hypothetical protein complement(428245..428535) Nautilia profundicola AmH 7504454 YP_002606904.1 CDS NAMH_0486 NC_012115.1 428693 429073 D identified by match to protein family HMM PF03646; polar flagellin 428693..429073 Nautilia profundicola AmH 7505459 YP_002606905.1 CDS NAMH_0487 NC_012115.1 429076 430782 D identified by match to protein family HMM PF02465; match to protein family HMM PF07195; match to protein family HMM PF07196; flagellar hook-associated protein 2 429076..430782 Nautilia profundicola AmH 7504562 YP_002606906.1 CDS fliS NC_012115.1 430793 431167 D flagellin specific chaperone; flagellar protein FliS 430793..431167 Nautilia profundicola AmH 7503879 YP_002606907.1 CDS NAMH_0489 NC_012115.1 431197 431448 D hypothetical protein 431197..431448 Nautilia profundicola AmH 7504406 YP_002606908.1 CDS NAMH_0490 NC_012115.1 431463 431969 R identified by glimmer; putative; hypothetical protein complement(431463..431969) Nautilia profundicola AmH 7504045 YP_002606909.1 CDS NAMH_0491 NC_012115.1 431970 432932 R identified by match to protein family HMM PF03595; C4-dicarboxylate transporter/malic acid transport protein complement(431970..432932) Nautilia profundicola AmH 7505110 YP_002606910.1 CDS NAMH_0492 NC_012115.1 433101 433571 D identified by match to protein family HMM PF00581; sulfide dehydrogenase 433101..433571 Nautilia profundicola AmH 7504636 YP_002606911.1 CDS ispE NC_012115.1 433580 434317 R catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(433580..434317) Nautilia profundicola AmH 7505146 YP_002606912.1 CDS csrA NC_012115.1 434317 434550 R identified by match to protein family HMM PF02599; match to protein family HMM TIGR00202; carbon storage regulator complement(434317..434550) Nautilia profundicola AmH 7504660 YP_002606913.1 CDS truB NC_012115.1 434544 435428 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(434544..435428) Nautilia profundicola AmH 7503837 YP_002606914.1 CDS NAMH_0496 NC_012115.1 435455 437452 R identified by match to protein family HMM PF00580; ATP-dependent DNA helicase PcrA complement(435455..437452) Nautilia profundicola AmH 7503835 YP_002606915.1 CDS NAMH_0497 NC_012115.1 437578 438447 D identified by match to protein family HMM PF00126; transcriptional regulator 437578..438447 Nautilia profundicola AmH 7504386 YP_002606916.1 CDS NAMH_0498 NC_012115.1 438723 439139 R hypothetical protein complement(438723..439139) Nautilia profundicola AmH 7504190 YP_002606917.1 CDS NAMH_0499 NC_012115.1 439114 440862 R identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR02290; oligoendopeptidase F complement(439114..440862) Nautilia profundicola AmH 7505212 YP_002606918.1 CDS NAMH_0500 NC_012115.1 440875 441432 R IlvE protein complement(440875..441432) Nautilia profundicola AmH 7504337 YP_002606919.1 CDS glnA NC_012115.1 441525 442967 D identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase, type I 441525..442967 Nautilia profundicola AmH 7505352 YP_002606920.1 CDS NAMH_0503 NC_012115.1 443032 444234 D identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 443032..444234 Nautilia profundicola AmH 7504907 YP_002606921.1 CDS NAMH_0502 NC_012115.1 444227 445186 R catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; para-aminobenzoate synthase component I complement(444227..445186) Nautilia profundicola AmH 7505518 YP_002606922.1 CDS pyrB NC_012115.1 445190 446071 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit complement(445190..446071) Nautilia profundicola AmH 7504139 YP_002606923.1 CDS NAMH_0505 NC_012115.1 446219 447121 R identified by match to protein family HMM PF08003; match to protein family HMM PF08241; match to protein family HMM PF08242; generic methyltransferase complement(446219..447121) Nautilia profundicola AmH 7505248 YP_002606924.1 CDS NAMH_0506 NC_012115.1 447178 447390 R putative lipoprotein complement(447178..447390) Nautilia profundicola AmH 7505337 YP_002606925.1 CDS NAMH_0507 NC_012115.1 447503 448690 D identified by match to protein family HMM PF01546; peptidase family M20/M25/M40 447503..448690 Nautilia profundicola AmH 7505533 YP_002606926.1 CDS NAMH_0508 NC_012115.1 448683 449303 D identified by match to protein family HMM PF00484; carbonic anhydrase 448683..449303 Nautilia profundicola AmH 7504970 YP_002606927.1 CDS NAMH_0509 NC_012115.1 449395 450720 R identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase complement(449395..450720) Nautilia profundicola AmH 7504843 YP_002606928.1 CDS NAMH_0510 NC_012115.1 450720 451805 R identified by match to protein family HMM PF03060; 2-nitropropane dioxygenase, NPD complement(450720..451805) Nautilia profundicola AmH 7504140 YP_002606929.1 CDS tyrS NC_012115.1 451805 453058 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(451805..453058) Nautilia profundicola AmH 7505089 YP_002606930.1 CDS NAMH_0512 NC_012115.1 453051 455165 R identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp synthetase I) ((P)ppGpp synthetase) complement(453051..455165) Nautilia profundicola AmH 7504649 YP_002606931.1 CDS NAMH_0513 NC_012115.1 455162 455365 R identified by match to protein family HMM PF01192; RNA polymerases K / 14 to 18 kDa subunit complement(455162..455365) Nautilia profundicola AmH 7505118 YP_002606932.1 CDS pyrH NC_012115.1 455376 456095 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(455376..456095) Nautilia profundicola AmH 7504071 YP_002606933.1 CDS NAMH_0515 NC_012115.1 456306 457241 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase D 456306..457241 Nautilia profundicola AmH 7504723 YP_002606934.1 CDS NAMH_0516 NC_012115.1 457180 458376 D identified by match to protein family HMM PF00041; fibronectin, type III 457180..458376 Nautilia profundicola AmH 7505251 YP_002606935.1 CDS NAMH_0517 NC_012115.1 458376 459494 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 458376..459494 Nautilia profundicola AmH 7504230 YP_002606936.1 CDS NAMH_0518 NC_012115.1 459472 460140 D identified by match to protein family HMM PF00005; cell division protein ftse 459472..460140 Nautilia profundicola AmH 7505407 YP_002606937.1 CDS NAMH_0519 NC_012115.1 460127 460912 D putative cell division protein FtsX 460127..460912 Nautilia profundicola AmH 7505361 YP_002606938.1 CDS NAMH_0520 NC_012115.1 460909 462027 D identified by match to protein family HMM PF01551; M23 peptidase domain protein 460909..462027 Nautilia profundicola AmH 7505104 YP_002606939.1 CDS rho NC_012115.1 462337 463662 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 462337..463662 Nautilia profundicola AmH 7503924 YP_002606940.1 CDS murI NC_012115.1 463655 464392 D converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 463655..464392 Nautilia profundicola AmH 7504183 YP_002606941.1 CDS NAMH_0523 NC_012115.1 464428 464673 D identified by match to protein family HMM PF02604; match to protein family HMM TIGR01552; prevent-host-death family protein 464428..464673 Nautilia profundicola AmH 7505081 YP_002606942.1 CDS NAMH_0525 NC_012115.1 464673 464930 D identified by match to protein family HMM PF06769; match to protein family HMM TIGR02116; addiction module toxin, Txe/YoeB family 464673..464930 Nautilia profundicola AmH 7504011 YP_002606943.1 CDS NAMH_0524 NC_012115.1 464921 465196 R plasmid stabilization system complement(464921..465196) Nautilia profundicola AmH 7505030 YP_002606944.1 CDS NAMH_0526 NC_012115.1 465189 465335 R hypothetical protein complement(465189..465335) Nautilia profundicola AmH 7503906 YP_002606945.1 CDS NAMH_0527 NC_012115.1 465496 466131 R short-chain dehydrogenase complement(465496..466131) Nautilia profundicola AmH 7505460 YP_002606946.1 CDS NAMH_0528 NC_012115.1 466422 467339 R identified by match to protein family HMM PF04055; radical SAM domain protein complement(466422..467339) Nautilia profundicola AmH 7504374 YP_002606947.1 CDS NAMH_0529 NC_012115.1 467489 471379 D hypothetical protein 467489..471379 Nautilia profundicola AmH 7504070 YP_002606948.1 CDS NAMH_0530 NC_012115.1 471801 472526 R hypothetical protein complement(471801..472526) Nautilia profundicola AmH 7505375 YP_002606949.1 CDS NAMH_0532 NC_012115.1 472608 472898 D hypothetical protein 472608..472898 Nautilia profundicola AmH 7503969 YP_002606950.1 CDS NAMH_0531 NC_012115.1 472895 473317 R identified by match to protein family HMM PF00156; xanthine guanine phosphoribosyl transferase complement(472895..473317) Nautilia profundicola AmH 7504581 YP_002606951.1 CDS NAMH_0533 NC_012115.1 473389 475560 D identified by glimmer; putative; hypothetical protein 473389..475560 Nautilia profundicola AmH 7504042 YP_002606952.1 CDS NAMH_0536 NC_012115.1 475905 476978 R identified by match to protein family HMM PF01098; cell cycle protein complement(475905..476978) Nautilia profundicola AmH 7505168 YP_002606953.1 CDS NAMH_0537 NC_012115.1 476975 478411 R identified by match to protein family HMM PF00015; methyl-accepting chemotaxis sensory transducer complement(476975..478411) Nautilia profundicola AmH 7503860 YP_002606954.1 CDS NAMH_0538 NC_012115.1 478401 478934 R identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229; PAS complement(478401..478934) Nautilia profundicola AmH 7505530 YP_002606955.1 CDS NAMH_0539 NC_012115.1 478931 479308 R hypothetical protein complement(478931..479308) Nautilia profundicola AmH 7504820 YP_002606956.1 CDS NAMH_0540 NC_012115.1 479295 479492 R hypothetical protein complement(479295..479492) Nautilia profundicola AmH 7503913 YP_002606957.1 CDS gidB NC_012115.1 479492 480019 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(479492..480019) Nautilia profundicola AmH 7504396 YP_002606958.1 CDS NAMH_0542 NC_012115.1 480016 480693 R NADH dehydrogenase complement(480016..480693) Nautilia profundicola AmH 7505490 YP_002606959.1 CDS ribA NC_012115.1 480693 481250 R identified by match to protein family HMM PF00925; match to protein family HMM TIGR00505; GTP cyclohydrolase II complement(480693..481250) Nautilia profundicola AmH 7505013 YP_002606960.1 CDS argF NC_012115.1 481416 482345 D identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00658; ornithine carbamoyltransferase 481416..482345 Nautilia profundicola AmH 7504318 YP_002606961.1 CDS NAMH_0545 NC_012115.1 482330 482707 D hypothetical protein 482330..482707 Nautilia profundicola AmH 7504211 YP_002606962.1 CDS NAMH_0546 NC_012115.1 482801 483553 D identified by match to protein family HMM PF00578; match to protein family HMM PF08534; alkyl hydroperoxide reductase 482801..483553 Nautilia profundicola AmH 7505263 YP_002606963.1 CDS NAMH_0547 NC_012115.1 483620 484021 D identified by match to protein family HMM PF01475; peroxide stress regulator 483620..484021 Nautilia profundicola AmH 7503947 YP_002606964.1 CDS NAMH_0549 NC_012115.1 484037 484312 D hypothetical protein 484037..484312 Nautilia profundicola AmH 7504653 YP_002606965.1 CDS pyk NC_012115.1 484309 485691 R identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase complement(484309..485691) Nautilia profundicola AmH 7504539 YP_002606966.1 CDS NAMH_0550 NC_012115.1 485807 486151 R identified by similarity to GB:ABB44798.1; periplasmic nitrate reductase, NapD subunit complement(485807..486151) Nautilia profundicola AmH 7505097 YP_002606967.1 CDS NAMH_0551 NC_012115.1 486161 487102 R periplasmic nitrate reductase, NapL subunit complement(486161..487102) Nautilia profundicola AmH 7504677 YP_002606968.1 CDS NAMH_0552 NC_012115.1 487111 487581 R identified by match to protein family HMM PF00037; periplasmic nitrate reductase, NapF subunit complement(487111..487581) Nautilia profundicola AmH 7504214 YP_002606969.1 CDS napB NC_012115.1 487581 488054 R identified by match to protein family HMM PF03892; periplasmic nitrate reductase, diahem cytochrome C subunit complement(487581..488054) Nautilia profundicola AmH 7504850 YP_002606970.1 CDS NAMH_0554 NC_012115.1 488035 488880 R identified by match to protein family HMM PF00037; match to protein family HMM TIGR02163; periplasmic nitrate reductase, NapH subunit complement(488035..488880) Nautilia profundicola AmH 7504640 YP_002606971.1 CDS NAMH_0555 NC_012115.1 488868 489689 R identified by match to protein family HMM PF00037; match to protein family HMM TIGR00397; periplasmic nitrate reductase, NapG subunit complement(488868..489689) Nautilia profundicola AmH 7504836 YP_002606972.1 CDS napA NC_012115.1 489698 492511 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit complement(489698..492511) Nautilia profundicola AmH 7504350 YP_002606973.1 CDS NAMH_0557 NC_012115.1 492708 493358 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two component transcriptional regulator, winged helix family 492708..493358 Nautilia profundicola AmH 7503965 YP_002606974.1 CDS NAMH_0558 NC_012115.1 493342 494967 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; PAS/PAC sensor signal transduction histidine kinase 493342..494967 Nautilia profundicola AmH 7505253 YP_002606975.1 CDS napC NC_012115.1 495104 495658 D periplasmic nitrate reductase, NapC membrane bound tetraheme cytochrome C subunit 495104..495658 Nautilia profundicola AmH 7504959 YP_002606976.1 CDS NAMH_0560 NC_012115.1 495888 496310 D Wp 495888..496310 Nautilia profundicola AmH 7505539 YP_002606977.1 CDS NAMH_0561 NC_012115.1 496307 498751 D identified by match to protein family HMM PF01578; cytochrome c biogenesis protein 496307..498751 Nautilia profundicola AmH 7504577 YP_002606978.1 CDS hemA NC_012115.1 498754 500013 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 498754..500013 Nautilia profundicola AmH 7504827 YP_002606979.1 CDS hemE NC_012115.1 500076 501098 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 500076..501098 Nautilia profundicola AmH 7505268 YP_002606980.1 CDS hemB NC_012115.1 501098 502078 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 501098..502078 Nautilia profundicola AmH 7505593 YP_002606981.1 CDS hemC NC_012115.1 502120 502995 D identified by match to protein family HMM PF01379; match to protein family HMM PF03900; match to protein family HMM TIGR00212; porphobilinogen deaminase 502120..502995 Nautilia profundicola AmH 7504154 YP_002606982.1 CDS hemN NC_012115.1 503015 504379 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 503015..504379 Nautilia profundicola AmH 7504692 YP_002606983.1 CDS NAMH_0567 NC_012115.1 504389 505087 D identified by glimmer; putative; hypothetical protein 504389..505087 Nautilia profundicola AmH 7504585 YP_002606984.1 CDS NAMH_0568 NC_012115.1 505087 505641 D identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383; DJ-1 505087..505641 Nautilia profundicola AmH 7505580 YP_002606985.1 CDS NAMH_0570 NC_012115.1 505667 505960 D identified by glimmer; putative; hypothetical protein 505667..505960 Nautilia profundicola AmH 7504766 YP_002606986.1 CDS hypA NC_012115.1 505957 506316 R identified by match to protein family HMM PF01155; match to protein family HMM TIGR00100; hydrogenase nickel insertion protein HypA complement(505957..506316) Nautilia profundicola AmH 7504272 YP_002606987.1 CDS NAMH_0571 NC_012115.1 506389 507009 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 506389..507009 Nautilia profundicola AmH 7505524 YP_002606988.1 CDS NAMH_0572 NC_012115.1 506993 507859 D identified by match to protein family HMM PF01058; NADH ubiquinone oxidoreductase, 20 kda subunit 506993..507859 Nautilia profundicola AmH 7504507 YP_002606989.1 CDS NAMH_0573 NC_012115.1 507846 509009 D identified by match to protein family HMM PF00374; nickel-dependent hydrogenase, large subunit 507846..509009 Nautilia profundicola AmH 7503826 YP_002606990.1 CDS NAMH_0574 NC_012115.1 509104 510237 D identified by match to protein family HMM PF01058; match to protein family HMM PF08425; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; quinone-reactive Ni/Fe-hydrogenase small chain 509104..510237 Nautilia profundicola AmH 7503818 YP_002606991.1 CDS NAMH_0575 NC_012115.1 510241 511980 D identified by match to protein family HMM PF00374; quinone-reactive Ni/Fe-hydrogenase large chain 510241..511980 Nautilia profundicola AmH 7504027 YP_002606992.1 CDS cybH NC_012115.1 511991 512683 D identified by match to protein family HMM PF01292; match to protein family HMM TIGR02125; Ni/Fe-hydrogenase, B-type cytochrome subunit 511991..512683 Nautilia profundicola AmH 7504902 YP_002606993.1 CDS hybD NC_012115.1 512814 513392 D identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140; match to protein family HMM TIGR00141; hydrogenase expression/formation protein 512814..513392 Nautilia profundicola AmH 7504257 YP_002606994.1 CDS NAMH_0578 NC_012115.1 513469 515202 D hypothetical protein 513469..515202 Nautilia profundicola AmH 7505515 YP_002606995.1 CDS hypF NC_012115.1 515322 517601 D identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143; [NiFe] hydrogenase maturation protein HypF 515322..517601 Nautilia profundicola AmH 7505338 YP_002606996.1 CDS NAMH_0579 NC_012115.1 517598 518155 R identified by glimmer; putative; hypothetical protein complement(517598..518155) Nautilia profundicola AmH 7503981 YP_002606997.1 CDS NAMH_0582 NC_012115.1 518235 518876 D putative carbon monoxide oxidation system transcription regulator CooA-1 518235..518876 Nautilia profundicola AmH 7505145 YP_002606998.1 CDS NAMH_0581 NC_012115.1 518844 519707 R identified by match to protein family HMM PF00892; permeases of the drug/metabolite transporter (DMT) superfamily complement(518844..519707) Nautilia profundicola AmH 7504726 YP_002606999.1 CDS NAMH_0583 NC_012115.1 519704 520660 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; ABC transporter permease complement(519704..520660) Nautilia profundicola AmH 7504813 YP_002607000.1 CDS NAMH_0584 NC_012115.1 520657 521457 R identified by match to protein family HMM PF00497; binding component of abc transporter complement(520657..521457) Nautilia profundicola AmH 7503903 YP_002607001.1 CDS NAMH_0585 NC_012115.1 521537 522274 R identified by match to protein family HMM PF00005; amino acid permease ATP-binding protein complement(521537..522274) Nautilia profundicola AmH 7504061 YP_002607002.1 CDS NAMH_0586 NC_012115.1 522283 523101 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease complement(522283..523101) Nautilia profundicola AmH 7505392 YP_002607003.1 CDS NAMH_0587 NC_012115.1 523094 523807 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease complement(523094..523807) Nautilia profundicola AmH 7504631 YP_002607004.1 CDS NAMH_0588 NC_012115.1 523848 524630 R identified by match to protein family HMM PF00497; extracellular solute-binding protein, family 3 complement(523848..524630) Nautilia profundicola AmH 7505085 YP_002607005.1 CDS NAMH_0589 NC_012115.1 524716 525330 R identified by glimmer; putative; hypothetical protein complement(524716..525330) Nautilia profundicola AmH 7505073 YP_002607006.1 CDS NAMH_0590 NC_012115.1 525341 526039 R identified by match to protein family HMM PF00669; putative flagellin complement(525341..526039) Nautilia profundicola AmH 7505244 YP_002607007.1 CDS NAMH_0591 NC_012115.1 526119 526880 D identified by match to protein family HMM PF00005; toluene tolerance protein ttg2a 526119..526880 Nautilia profundicola AmH 7503952 YP_002607008.1 CDS NAMH_0593 NC_012115.1 526990 527724 D hypothetical protein 526990..527724 Nautilia profundicola AmH 7505052 YP_002607009.1 CDS NAMH_0592 NC_012115.1 527716 527931 R identified by glimmer; putative; hypothetical protein complement(527716..527931) Nautilia profundicola AmH 7505306 YP_002607010.1 CDS dapE NC_012115.1 528002 529099 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(528002..529099) Nautilia profundicola AmH 7504104 YP_002607011.1 CDS NAMH_0596 NC_012115.1 529168 530046 D putative NH2 terminus uncertain 529168..530046 Nautilia profundicola AmH 7505395 YP_002607012.1 CDS NAMH_0595 NC_012115.1 530033 530512 R identified by match to protein family HMM PF08242; tellurite resistance protein TehB complement(530033..530512) Nautilia profundicola AmH 7503932 YP_002607013.1 CDS NAMH_0597 NC_012115.1 530595 531755 D identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; N-acyl-L-amino acid amidohydrolase 530595..531755 Nautilia profundicola AmH 7504773 YP_002607014.1 CDS NAMH_0599 NC_012115.1 531752 532759 D identified by match to protein family HMM PF00583; acetyltransferase, gnat family 531752..532759 Nautilia profundicola AmH 7504327 YP_002607015.1 CDS NAMH_0598 NC_012115.1 532746 533300 R identified by match to protein family HMM PF05728; hypothetical protein complement(532746..533300) Nautilia profundicola AmH 7504207 YP_002607016.1 CDS NAMH_0600 NC_012115.1 533297 533635 R putative lipoprotein complement(533297..533635) Nautilia profundicola AmH 7504329 YP_002607017.1 CDS NAMH_0601 NC_012115.1 533698 534369 D identified by match to protein family HMM PF00005; ABC transporter ATPase 533698..534369 Nautilia profundicola AmH 7504695 YP_002607018.1 CDS NAMH_0602 NC_012115.1 534371 535579 D identified by match to protein family HMM PF02687; efflux ABC transporter, permease protein 534371..535579 Nautilia profundicola AmH 7504619 YP_002607019.1 CDS NAMH_0603 NC_012115.1 535600 535758 D identified by glimmer; putative; hypothetical protein 535600..535758 Nautilia profundicola AmH 7504633 YP_002607020.1 CDS NAMH_0604 NC_012115.1 535793 536491 D hypothetical protein 535793..536491 Nautilia profundicola AmH 7505247 YP_002607021.1 CDS NAMH_0605 NC_012115.1 536513 537550 D identified by glimmer; putative; hypothetical protein 536513..537550 Nautilia profundicola AmH 7504152 YP_002607022.1 CDS ligA NC_012115.1 537602 539572 D this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 537602..539572 Nautilia profundicola AmH 7504736 YP_002607023.1 CDS clpS NC_012115.1 539639 539932 D identified by match to protein family HMM PF02617; ATP-dependent Clp protease adaptor protein ClpS 539639..539932 Nautilia profundicola AmH 7504004 YP_002607024.1 CDS NAMH_0608 NC_012115.1 539933 542095 D identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; endopeptidase clp ATP-binding chain a 539933..542095 Nautilia profundicola AmH 7504094 YP_002607025.1 CDS aat NC_012115.1 542092 542832 D identified by match to protein family HMM PF03588; match to protein family HMM TIGR00667; leucyl/phenylalanyl-tRNA--protein transferase 542092..542832 Nautilia profundicola AmH 7504111 YP_002607026.1 CDS pgi NC_012115.1 542856 544073 D catalyzes the formation of D-fructose 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate isomerase 542856..544073 Nautilia profundicola AmH 7503889 YP_002607027.1 CDS NAMH_0610 NC_012115.1 544063 544680 R identified by match to protein family HMM PF00717; hypothetical protein complement(544063..544680) Nautilia profundicola AmH 7505075 YP_002607028.1 CDS NAMH_0612 NC_012115.1 544898 546136 D identified by match to protein family HMM PF00817; DNA-directed DNA polymerase 544898..546136 Nautilia profundicola AmH 7504626 YP_002607029.1 CDS flgG NC_012115.1 546139 546927 R makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG complement(546139..546927) Nautilia profundicola AmH 7505456 YP_002607030.1 CDS NAMH_0614 NC_012115.1 547275 548060 R identified by match to protein family HMM PF00460; flagellar basal-body rod protein complement(547275..548060) Nautilia profundicola AmH 7505432 YP_002607031.1 CDS NAMH_0615 NC_012115.1 548198 550012 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 548198..550012 Nautilia profundicola AmH 7504058 YP_002607032.1 CDS nadE NC_012115.1 550019 550855 D identified by match to protein family HMM PF02540; match to protein family HMM PF03054; match to protein family HMM PF06508; match to protein family HMM TIGR00552; NAD+ synthetase 550019..550855 Nautilia profundicola AmH 7504688 YP_002607033.1 CDS lpxK NC_012115.1 550870 551772 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 550870..551772 Nautilia profundicola AmH 7504927 YP_002607034.1 CDS NAMH_0618 NC_012115.1 551775 552332 D hypothetical protein 551775..552332 Nautilia profundicola AmH 7505144 YP_002607035.1 CDS NAMH_0619 NC_012115.1 552329 553336 D putative lipoprotein 552329..553336 Nautilia profundicola AmH 7503858 YP_002607036.1 CDS NAMH_0620 NC_012115.1 553329 554156 D identified by match to protein family HMM PF00589; match to protein family HMM PF02899; phage integrase 553329..554156 Nautilia profundicola AmH 7504926 YP_002607037.1 CDS NAMH_0621 NC_012115.1 554159 554482 D hypothetical protein 554159..554482 Nautilia profundicola AmH 7503985 YP_002607038.1 CDS NAMH_0622 NC_012115.1 554469 555077 D type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 554469..555077 Nautilia profundicola AmH 7504367 YP_002607039.1 CDS hisG NC_012115.1 555074 555691 D short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 555074..555691 Nautilia profundicola AmH 7505069 YP_002607040.1 CDS NAMH_0624 NC_012115.1 555681 556352 D identified by match to protein family HMM PF08241; hypothetical protein 555681..556352 Nautilia profundicola AmH 7504835 YP_002607041.1 CDS nth NC_012115.1 556353 556997 R identified by match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III complement(556353..556997) Nautilia profundicola AmH 7505468 YP_002607042.1 CDS NAMH_0626 NC_012115.1 557096 557812 D identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 557096..557812 Nautilia profundicola AmH 7503904 YP_002607043.1 CDS NAMH_0627 NC_012115.1 557873 558733 D identified by match to protein family HMM PF00639; foldase protein PrsA 557873..558733 Nautilia profundicola AmH 7504419 YP_002607044.1 CDS fbaA NC_012115.1 558744 559808 D catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 558744..559808 Nautilia profundicola AmH 7505001 YP_002607045.1 CDS NAMH_0629 NC_012115.1 559808 560680 D hypothetical protein 559808..560680 Nautilia profundicola AmH 7505484 YP_002607046.1 CDS NAMH_0630 NC_012115.1 560846 562705 D identified by match to protein family HMM PF00361; hydrogenase, EchA subunit 560846..562705 Nautilia profundicola AmH 7504501 YP_002607047.1 CDS NAMH_0631 NC_012115.1 562702 563541 D identified by match to protein family HMM PF00146; EchB 562702..563541 Nautilia profundicola AmH 7505366 YP_002607048.1 CDS NAMH_0632 NC_012115.1 563544 564038 D identified by match to protein family HMM PF01058; hydrogenase-4 component I 563544..564038 Nautilia profundicola AmH 7504005 YP_002607049.1 CDS NAMH_0633 NC_012115.1 564028 564399 D an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; putative F420H2:quinone oxidoreductase, 39.7 kDa subunit 564028..564399 Nautilia profundicola AmH 7504398 YP_002607050.1 CDS NAMH_0634 NC_012115.1 564392 565477 D identified by match to protein family HMM PF00346; Ech Hydrogenase, Subunit 564392..565477 Nautilia profundicola AmH 7504628 YP_002607051.1 CDS NAMH_0635 NC_012115.1 565488 565994 D identified by match to protein family HMM PF00037; NADH-ubiquinone oxidoreductase 23 kda subunit 565488..565994 Nautilia profundicola AmH 7504697 YP_002607052.1 CDS NAMH_0636 NC_012115.1 566059 566970 D identified by match to protein family HMM PF00389; match to protein family HMM PF02826; putative D-3-phosphoglycerate dehydrogenase 566059..566970 Nautilia profundicola AmH 7504142 YP_002607053.1 CDS NAMH_0637 NC_012115.1 566971 567327 D putative lipoprotein 566971..567327 Nautilia profundicola AmH 7504901 YP_002607054.1 CDS NAMH_0642 NC_012115.1 568009 568200 D identified by glimmer; putative; hypothetical protein 568009..568200 Nautilia profundicola AmH 7505167 YP_002607055.1 CDS NAMH_0643 NC_012115.1 568203 568754 R identified by match to protein family HMM PF03692; hypothetical protein complement(568203..568754) Nautilia profundicola AmH 7505127 YP_002607056.1 CDS NAMH_0644 NC_012115.1 568744 569571 R identified by match to protein family HMM PF06167; hypothetical protein complement(568744..569571) Nautilia profundicola AmH 7504994 YP_002607057.1 CDS crcB NC_012115.1 569571 569957 R identified by match to protein family HMM PF02537; match to protein family HMM TIGR00494; CrcB protein complement(569571..569957) Nautilia profundicola AmH 7503995 YP_002607058.1 CDS NAMH_0646 NC_012115.1 570017 570709 R identified by match to protein family HMM PF01553; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(570017..570709) Nautilia profundicola AmH 7504018 YP_002607059.1 CDS NAMH_0647 NC_012115.1 570693 571661 R hypothetical protein complement(570693..571661) Nautilia profundicola AmH 7505390 YP_002607060.1 CDS NAMH_0648 NC_012115.1 571658 572758 R identified by match to protein family HMM PF01551; peptidase M23B complement(571658..572758) Nautilia profundicola AmH 7505506 YP_002607061.1 CDS purQ NC_012115.1 572755 573423 R identified by match to protein family HMM PF07685; match to protein family HMM TIGR01737; phosphoribosylformylglycinamidine synthase I complement(572755..573423) Nautilia profundicola AmH 7505066 YP_002607062.1 CDS purS NC_012115.1 573423 573662 R identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302; phosphoribosylformylglycinamidine synthase, PurS protein complement(573423..573662) Nautilia profundicola AmH 7504128 YP_002607063.1 CDS purC NC_012115.1 573659 574366 R identified by match to protein family HMM PF01259; match to protein family HMM TIGR00081; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(573659..574366) Nautilia profundicola AmH 7505308 YP_002607064.1 CDS NAMH_0652 NC_012115.1 574363 575613 R identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; tail-specific protease complement(574363..575613) Nautilia profundicola AmH 7505250 YP_002607065.1 CDS NAMH_0653 NC_012115.1 575813 576295 D an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02861; chaperone ClpB 575813..576295 Nautilia profundicola AmH 7504943 YP_002607066.1 CDS NAMH_0654 NC_012115.1 578594 578959 D identified by glimmer; putative; hypothetical protein 578594..578959 Nautilia profundicola AmH 7504020 YP_002607067.1 CDS NAMH_0655 NC_012115.1 579001 579585 D identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229; PAS 579001..579585 Nautilia profundicola AmH 7504253 YP_002607068.1 CDS NAMH_0656 NC_012115.1 579589 581064 D identified by match to protein family HMM PF00015; methyl-accepting chemotaxis sensory transducer 579589..581064 Nautilia profundicola AmH 7504241 YP_002607069.1 CDS gltX NC_012115.1 581066 582370 D charges one glutamine molecule and pairs it with tRNA(Gln); glutamylglutaminyl-tRNA synthetase 581066..582370 Nautilia profundicola AmH 7503982 YP_002607070.1 CDS NAMH_0658 NC_012115.1 582367 582642 D identified by match to protein family HMM PF02325; yggt family protein 582367..582642 Nautilia profundicola AmH 7504812 YP_002607071.1 CDS NAMH_0660 NC_012115.1 582639 584126 D identified by match to protein family HMM PF01464; transglycosylase SLT domain protein 582639..584126 Nautilia profundicola AmH 7504055 YP_002607072.1 CDS NAMH_0659 NC_012115.1 584116 584556 R putative lipoprotein complement(584116..584556) Nautilia profundicola AmH 7504968 YP_002607073.1 CDS NAMH_0661 NC_012115.1 584601 585131 D identified by glimmer; putative; hypothetical protein 584601..585131 Nautilia profundicola AmH 7505137 YP_002607074.1 CDS NAMH_0662 NC_012115.1 585192 585407 D identified by glimmer; putative; hypothetical protein 585192..585407 Nautilia profundicola AmH 7504834 YP_002607075.1 CDS NAMH_0663 NC_012115.1 585469 585954 D transformation system protein 585469..585954 Nautilia profundicola AmH 7505032 YP_002607076.1 CDS gyrA NC_012115.1 585997 588447 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 585997..588447 Nautilia profundicola AmH 7504918 YP_002607077.1 CDS NAMH_0665 NC_012115.1 588437 589096 D identified by match to protein family HMM PF04164; hypothetical protein 588437..589096 Nautilia profundicola AmH 7505213 YP_002607078.1 CDS NAMH_0666 NC_012115.1 589302 589430 D identified by glimmer; putative; hypothetical protein 589302..589430 Nautilia profundicola AmH 7505481 YP_002607079.1 CDS NAMH_0667 NC_012115.1 589430 590545 D identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF07728; signal-transduction regulatory protein 589430..590545 Nautilia profundicola AmH 7504173 YP_002607080.1 CDS asd NC_012115.1 590555 591586 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 590555..591586 Nautilia profundicola AmH 7504143 YP_002607081.1 CDS NAMH_0669 NC_012115.1 591586 592110 D identified by match to protein family HMM PF03350; hypothetical protein 591586..592110 Nautilia profundicola AmH 7505569 YP_002607082.1 CDS NAMH_0670 NC_012115.1 592135 593031 D identified by match to protein family HMM PF04055; radical SAM domain protein 592135..593031 Nautilia profundicola AmH 7504599 YP_002607083.1 CDS NAMH_0671 NC_012115.1 593098 593604 D hypothetical protein 593098..593604 Nautilia profundicola AmH 7504267 YP_002607084.1 CDS NAMH_0673 NC_012115.1 593653 594723 D identified by glimmer; putative; hypothetical protein 593653..594723 Nautilia profundicola AmH 7504496 YP_002607085.1 CDS NAMH_0672 NC_012115.1 594720 595505 R hypothetical protein complement(594720..595505) Nautilia profundicola AmH 7505499 YP_002607086.1 CDS NAMH_0674 NC_012115.1 595580 596476 D identified by match to protein family HMM PF03150; cytochrome c551 peroxidase 595580..596476 Nautilia profundicola AmH 7504164 YP_002607087.1 CDS NAMH_0675 NC_012115.1 596473 598503 D identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; ggdef family protein 596473..598503 Nautilia profundicola AmH 7504422 YP_002607088.1 CDS asnB NC_012115.1 598505 600205 D identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; asparagine synthase (glutamine-hydrolyzing) 598505..600205 Nautilia profundicola AmH 7505562 YP_002607089.1 CDS NAMH_0678 NC_012115.1 600202 600969 D an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; hypothetical protein 600202..600969 Nautilia profundicola AmH 7505556 YP_002607090.1 CDS NAMH_0677 NC_012115.1 600966 601721 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; NADP-dependent l-serine/l-allo-threonine dehydrogenase ydfg complement(600966..601721) Nautilia profundicola AmH 7504698 YP_002607091.1 CDS NAMH_0679 NC_012115.1 601731 603329 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer complement(601731..603329) Nautilia profundicola AmH 7504614 YP_002607092.1 CDS trpA NC_012115.1 604082 604804 R identified by match to protein family HMM PF00290; match to protein family HMM TIGR00262; tryptophan synthase, alpha subunit complement(604082..604804) Nautilia profundicola AmH 7505154 YP_002607093.1 CDS panB NC_012115.1 604855 605631 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 604855..605631 Nautilia profundicola AmH 7504200 YP_002607094.1 CDS ruvB NC_012115.1 605631 606623 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 605631..606623 Nautilia profundicola AmH 7504305 YP_002607095.1 CDS NAMH_0684 NC_012115.1 606633 607631 D identified by match to protein family HMM PF01594; acid membrane antigen A 606633..607631 Nautilia profundicola AmH 7505470 YP_002607096.1 CDS NAMH_0685 NC_012115.1 607734 608480 D putative heat-inducible transcription repressor HrcA 607734..608480 Nautilia profundicola AmH 7504377 YP_002607097.1 CDS grpE NC_012115.1 608481 608999 D identified by match to protein family HMM PF01025; co-chaperone GrpE 608481..608999 Nautilia profundicola AmH 7504490 YP_002607098.1 CDS dnaK NC_012115.1 609017 610897 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 609017..610897 Nautilia profundicola AmH 7504822 YP_002607099.1 CDS NAMH_0688 NC_012115.1 611087 612793 R identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein complement(611087..612793) Nautilia profundicola AmH 7504119 YP_002607100.1 CDS NAMH_0689 NC_012115.1 612790 614037 R identified by match to protein family HMM PF00654; putative chloride channel protein complement(612790..614037) Nautilia profundicola AmH 7504896 YP_002607101.1 CDS NAMH_0690 NC_012115.1 614049 614444 R identified by glimmer; putative; hypothetical protein complement(614049..614444) Nautilia profundicola AmH 7504641 YP_002607102.1 CDS dtd NC_012115.1 614446 614871 R identified by match to protein family HMM PF02580; match to protein family HMM TIGR00256; D-tyrosyl-tRNA(Tyr) deacylase complement(614446..614871) Nautilia profundicola AmH 7504712 YP_002607103.1 CDS hemH NC_012115.1 614846 615742 R identified by match to protein family HMM PF00762; match to protein family HMM TIGR00109; ferrochelatase complement(614846..615742) Nautilia profundicola AmH 7504416 YP_002607104.1 CDS NAMH_0693 NC_012115.1 615742 616758 R bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein complement(615742..616758) Nautilia profundicola AmH 7505304 YP_002607105.1 CDS NAMH_0694 NC_012115.1 616771 617781 R identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence/damage-inducible domain protein complement(616771..617781) Nautilia profundicola AmH 7503998 YP_002607106.1 CDS NAMH_0695 NC_012115.1 617831 618631 D identified by match to protein family HMM PF03976; polyphosphate kinase 2 617831..618631 Nautilia profundicola AmH 7504781 YP_002607107.1 CDS ileS NC_012115.1 618759 621494 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 618759..621494 Nautilia profundicola AmH 7504838 YP_002607108.1 CDS NAMH_0697 NC_012115.1 621463 621594 D hypothetical protein 621463..621594 Nautilia profundicola AmH 7504389 YP_002607109.1 CDS gatA NC_012115.1 621594 622949 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 621594..622949 Nautilia profundicola AmH 7504933 YP_002607110.1 CDS guaB NC_012115.1 622946 624394 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 622946..624394 Nautilia profundicola AmH 7505119 YP_002607111.1 CDS NAMH_0700 NC_012115.1 624516 625469 D identified by match to protein family HMM TIGR02122; immunogenic protein 624516..625469 Nautilia profundicola AmH 7503833 YP_002607112.1 CDS NAMH_0701 NC_012115.1 625526 627643 D identified by match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR02123; transporter 625526..627643 Nautilia profundicola AmH 7504939 YP_002607113.1 CDS NAMH_0702 NC_012115.1 627723 627959 D identified by glimmer; putative; hypothetical protein 627723..627959 Nautilia profundicola AmH 7504405 YP_002607114.1 CDS NAMH_0703 NC_012115.1 627956 628966 D hypothetical protein 627956..628966 Nautilia profundicola AmH 7504508 YP_002607115.1 CDS NAMH_0704 NC_012115.1 628981 630315 D identified by match to protein family HMM PF00278; match to protein family HMM PF02784; Orn/DAP/Arg decarboxylase, family 2 628981..630315 Nautilia profundicola AmH 7503914 YP_002607116.1 CDS NAMH_0705 NC_012115.1 630318 632342 D identified by match to protein family HMM PF01551; match to protein family HMM PF03253; putative urea transporter 630318..632342 Nautilia profundicola AmH 7504114 YP_002607117.1 CDS NAMH_0706 NC_012115.1 632317 632907 D putative TPR domain protein 632317..632907 Nautilia profundicola AmH 7505117 YP_002607118.1 CDS NAMH_0707 NC_012115.1 632904 633494 D response regulator 632904..633494 Nautilia profundicola AmH 7504925 YP_002607119.1 CDS NAMH_0709 NC_012115.1 633497 634381 D identified by glimmer; putative; hypothetical protein 633497..634381 Nautilia profundicola AmH 7504178 YP_002607120.1 CDS NAMH_0708 NC_012115.1 634378 635274 R identified by match to protein family HMM PF02219; methylenetetrahydrofolate reductase complement(634378..635274) Nautilia profundicola AmH 7505289 YP_002607121.1 CDS NAMH_0710 NC_012115.1 635335 635670 D identified by match to protein family HMM PF00126; molybdenum-pterin-binding protein 635335..635670 Nautilia profundicola AmH 7504259 YP_002607122.1 CDS NAMH_0711 NC_012115.1 635699 636262 D TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 635699..636262 Nautilia profundicola AmH 7505399 YP_002607123.1 CDS NAMH_0712 NC_012115.1 636259 637413 D putative integral membrane protein 636259..637413 Nautilia profundicola AmH 7504981 YP_002607124.1 CDS NAMH_0713 NC_012115.1 637499 638833 D identified by match to protein family HMM PF08442; ATP-citrate synthase (ATP-citrate (pro-S-)-lyase) 637499..638833 Nautilia profundicola AmH 7503840 YP_002607125.1 CDS NAMH_0714 NC_012115.1 638833 640680 D an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00549; ATP-citrate synthase (ATP-citrate (pro-S-)-lyase) 638833..640680 Nautilia profundicola AmH 7505383 YP_002607126.1 CDS NAMH_0715 NC_012115.1 640640 641371 D identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; N-terminal methylation 640640..641371 Nautilia profundicola AmH 7504100 YP_002607127.1 CDS NAMH_0723 NC_012115.1 647290 648483 D identified by match to protein family HMM PF01435; Ste24 endopeptidase 647290..648483 Nautilia profundicola AmH 7504246 YP_002607128.1 CDS NAMH_0724 NC_012115.1 648480 649139 D identified by match to protein family HMM PF00106; alcohol dehydrogenase 648480..649139 Nautilia profundicola AmH 7503949 YP_002607129.1 CDS NAMH_0726 NC_012115.1 649136 649909 D identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; modification methylase, HemK family 649136..649909 Nautilia profundicola AmH 7503919 YP_002607130.1 CDS NAMH_0725 NC_012115.1 649899 651038 R identified by match to protein family HMM PF07690; related to fosmidomycin resistance protein complement(649899..651038) Nautilia profundicola AmH 7505436 YP_002607131.1 CDS NAMH_0727 NC_012115.1 651035 651307 R identified by glimmer; putative; hypothetical protein complement(651035..651307) Nautilia profundicola AmH 7505045 YP_002607132.1 CDS NAMH_0728 NC_012115.1 651317 651892 R identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427; hypothetical protein complement(651317..651892) Nautilia profundicola AmH 7504984 YP_002607133.1 CDS NAMH_0730 NC_012115.1 651941 654694 D identified by match to protein family HMM PF00488; match to protein family HMM PF01624; match to protein family HMM PF05192; MutS-related protein 651941..654694 Nautilia profundicola AmH 7504037 YP_002607134.1 CDS NAMH_0729 NC_012115.1 654691 655305 R hypothetical protein complement(654691..655305) Nautilia profundicola AmH 7505295 YP_002607135.1 CDS NAMH_0731 NC_012115.1 655429 656457 D identified by match to protein family HMM PF01497; HemV-3 iron (III) ABC transporter, ATP-binding protein 655429..656457 Nautilia profundicola AmH 7504090 YP_002607136.1 CDS NAMH_0732 NC_012115.1 656442 657422 D identified by match to protein family HMM PF00950; match to protein family HMM PF01032; ABC-type iron(III)-siderophore transport system, permease component 656442..657422 Nautilia profundicola AmH 7505205 YP_002607137.1 CDS NAMH_0733 NC_012115.1 657424 658179 D identified by match to protein family HMM PF00005; iron ABC transporter ATPase subunit 657424..658179 Nautilia profundicola AmH 7503873 YP_002607138.1 CDS NAMH_0735 NC_012115.1 659795 660331 D identified by glimmer; putative; hypothetical protein 659795..660331 Nautilia profundicola AmH 7504003 YP_002607139.1 CDS NAMH_0736 NC_012115.1 660358 661119 D identified by match to protein family HMM PF00005; cobalt import ATP-binding protein CbiO 2 660358..661119 Nautilia profundicola AmH 7504431 YP_002607140.1 CDS hypB NC_012115.1 661331 662041 D identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073; hydrogenase accessory protein HypB 661331..662041 Nautilia profundicola AmH 7505079 YP_002607141.1 CDS hypC NC_012115.1 662074 662388 D identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase assembly chaperone HypC/HupF 662074..662388 Nautilia profundicola AmH 7505007 YP_002607142.1 CDS hypD NC_012115.1 662406 663524 D identified by match to protein family HMM PF01924; match to protein family HMM TIGR00075; hydrogenase expression/formation protein HypD 662406..663524 Nautilia profundicola AmH 7505288 YP_002607143.1 CDS hypE NC_012115.1 663569 664546 D identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124; hydrogenase expression/formation protein HypE 663569..664546 Nautilia profundicola AmH 7504401 YP_002607144.1 CDS ubiE NC_012115.1 664593 665294 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 664593..665294 Nautilia profundicola AmH 7505449 YP_002607145.1 CDS thiS NC_012115.1 665423 665623 R identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS complement(665423..665623) Nautilia profundicola AmH 7504875 YP_002607146.1 CDS glyS NC_012115.1 665632 667605 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(665632..667605) Nautilia profundicola AmH 7504428 YP_002607147.1 CDS NAMH_0744 NC_012115.1 667693 669585 D identified by glimmer; putative; hypothetical protein 667693..669585 Nautilia profundicola AmH 7505149 YP_002607148.1 CDS NAMH_0745 NC_012115.1 669600 669971 D hypothetical protein 669600..669971 Nautilia profundicola AmH 7504504 YP_002607149.1 CDS NAMH_0746 NC_012115.1 669968 671446 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; multi-sensor signal transduction histidine kinase 669968..671446 Nautilia profundicola AmH 7505380 YP_002607150.1 CDS NAMH_0747 NC_012115.1 671439 673412 D identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; diguanylate cyclase/phosphodiesterase 671439..673412 Nautilia profundicola AmH 7504336 YP_002607151.1 CDS NAMH_0748 NC_012115.1 673421 673825 D 4-hydroxybenzoyl-CoA thioesterase domain protein 673421..673825 Nautilia profundicola AmH 7503845 YP_002607152.1 CDS NAMH_0749 NC_012115.1 673827 674327 R identified by match to protein family HMM PF01058; hydrogenase subunit complement(673827..674327) Nautilia profundicola AmH 7504782 YP_002607153.1 CDS NAMH_0750 NC_012115.1 674337 675701 R an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00329; match to protein family HMM PF00346; hydrogenase-3, subunit E complement(674337..675701) Nautilia profundicola AmH 7504944 YP_002607154.1 CDS NAMH_0751 NC_012115.1 675698 677077 R identified by match to protein family HMM PF00361; NADH-ubiquinone/plastoquinone (complex i), various chains domain protein complement(675698..677077) Nautilia profundicola AmH 7505443 YP_002607155.1 CDS NAMH_0752 NC_012115.1 677078 677665 R hypothetical protein complement(677078..677665) Nautilia profundicola AmH 7504687 YP_002607156.1 CDS NAMH_0753 NC_012115.1 677667 678587 R formate hydrogenlyase subunit 4 complement(677667..678587) Nautilia profundicola AmH 7504982 YP_002607157.1 CDS NAMH_0754 NC_012115.1 678584 680443 R identified by match to protein family HMM PF00361; hydrogenase-4 component B complement(678584..680443) Nautilia profundicola AmH 7504237 YP_002607158.1 CDS NAMH_0755 NC_012115.1 680553 681440 R identified by match to protein family HMM PF03328; HpcH/HpaI aldolase complement(680553..681440) Nautilia profundicola AmH 7504064 YP_002607159.1 CDS NAMH_0756 NC_012115.1 681440 681835 R hypothetical protein complement(681440..681835) Nautilia profundicola AmH 7504964 YP_002607160.1 CDS NAMH_0757 NC_012115.1 681897 682751 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 681897..682751 Nautilia profundicola AmH 7505408 YP_002607161.1 CDS lepB NC_012115.1 682748 683587 D identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 682748..683587 Nautilia profundicola AmH 7505355 YP_002607162.1 CDS NAMH_0760 NC_012115.1 683597 684259 D identified by match to protein family HMM PF02163; peptidase M50 683597..684259 Nautilia profundicola AmH 7505283 YP_002607163.1 CDS dnaJ NC_012115.1 684256 685350 R identified by match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; match to protein family HMM TIGR02349; chaperone protein DnaJ complement(684256..685350) Nautilia profundicola AmH 7505293 YP_002607164.1 CDS purL NC_012115.1 685524 687719 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 685524..687719 Nautilia profundicola AmH 7504335 YP_002607165.1 CDS NAMH_0761 NC_012115.1 687712 688587 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator complement(687712..688587) Nautilia profundicola AmH 7504081 YP_002607166.1 CDS NAMH_0763 NC_012115.1 688685 689443 D an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03601; inner membrane protein YeiH 688685..689443 Nautilia profundicola AmH 7505441 YP_002607167.1 CDS NAMH_0764 NC_012115.1 689524 689703 D an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; inner membrane protein YeiH 689524..689703 Nautilia profundicola AmH 7505319 YP_002607168.1 CDS NAMH_0765 NC_012115.1 689708 691108 R identified by match to protein family HMM PF00753; match to protein family HMM PF07521; RNA-metabolising metallo-beta-lactamase complement(689708..691108) Nautilia profundicola AmH 7505231 YP_002607169.1 CDS ppsA NC_012115.1 691154 693547 R identified by match to protein family HMM PF00391; match to protein family HMM PF01326; match to protein family HMM PF02896; match to protein family HMM TIGR01418; phosphoenolpyruvate synthase complement(691154..693547) Nautilia profundicola AmH 7505572 YP_002607170.1 CDS NAMH_0767 NC_012115.1 693608 694822 R hypothetical protein complement(693608..694822) Nautilia profundicola AmH 7503967 YP_002607171.1 CDS NAMH_0768 NC_012115.1 694819 697485 R identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01647; plasma-membrane proton-efflux P-type ATPase complement(694819..697485) Nautilia profundicola AmH 7504145 YP_002607172.1 CDS gidA NC_012115.1 697641 698933 R identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; glucose inhibited division protein A complement(697641..698933) Nautilia profundicola AmH 7505371 YP_002607173.1 CDS NAMH_0770 NC_012115.1 698926 700131 R identified by match to protein family HMM PF00198; match to protein family HMM PF00364; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex complement(698926..700131) Nautilia profundicola AmH 7504655 YP_002607174.1 CDS NAMH_0771 NC_012115.1 700121 701095 R identified by match to protein family HMM PF02779; match to protein family HMM PF02780; pyruvate dehydrogenase E1 component beta subunit complement(700121..701095) Nautilia profundicola AmH 7505098 YP_002607175.1 CDS NAMH_0772 NC_012115.1 701082 702053 R identified by match to protein family HMM PF00676; pyruvate dehydrogenase E1 component, alpha subunit complement(701082..702053) Nautilia profundicola AmH 7505277 YP_002607176.1 CDS NAMH_0773 NC_012115.1 702046 702378 R identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; DNA-binding protein complement(702046..702378) Nautilia profundicola AmH 7503989 YP_002607177.1 CDS NAMH_0774 NC_012115.1 702453 704357 R identified by match to protein family HMM PF02629; CoA binding domain protein complement(702453..704357) Nautilia profundicola AmH 7504516 YP_002607178.1 CDS NAMH_0775 NC_012115.1 704359 705321 R identified by match to protein family HMM PF00365; 6-phosphofructokinase complement(704359..705321) Nautilia profundicola AmH 7504021 YP_002607179.1 CDS NAMH_0776 NC_012115.1 705331 706146 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(705331..706146) Nautilia profundicola AmH 7504016 YP_002607180.1 CDS NAMH_0777 NC_012115.1 706115 706705 R putative lipoyltransferase complement(706115..706705) Nautilia profundicola AmH 7504690 YP_002607181.1 CDS purH NC_012115.1 706756 708270 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 706756..708270 Nautilia profundicola AmH 7504279 YP_002607182.1 CDS NAMH_0779 NC_012115.1 708306 709415 D identified by match to protein family HMM PF07690; putative permeases of the major facilitator superfamily 708306..709415 Nautilia profundicola AmH 7504219 YP_002607183.1 CDS NAMH_0780 NC_012115.1 709396 709827 D hypothetical protein 709396..709827 Nautilia profundicola AmH 7503937 YP_002607184.1 CDS NAMH_0781 NC_012115.1 709878 710141 D hypothetical protein 709878..710141 Nautilia profundicola AmH 7505532 YP_002607185.1 CDS NAMH_0782 NC_012115.1 710134 710517 D hypothetical protein 710134..710517 Nautilia profundicola AmH 7504462 YP_002607186.1 CDS NAMH_0784 NC_012115.1 710514 711377 D identified by match to protein family HMM PF00348; prenyl transferase 710514..711377 Nautilia profundicola AmH 7505585 YP_002607187.1 CDS NAMH_0783 NC_012115.1 711374 712036 R identified by match to protein family HMM PF01656; ATPase, ParA family complement(711374..712036) Nautilia profundicola AmH 7504049 YP_002607188.1 CDS NAMH_0785 NC_012115.1 712100 713005 D identified by match to protein family HMM PF03976; polyphosphate kinase 2 712100..713005 Nautilia profundicola AmH 7505138 YP_002607189.1 CDS trpD NC_012115.1 713016 713999 D identified by match to protein family HMM PF00591; match to protein family HMM TIGR01245; anthranilate phosphoribosyltransferase 713016..713999 Nautilia profundicola AmH 7504288 YP_002607190.1 CDS NAMH_0787 NC_012115.1 714017 714418 D identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 714017..714418 Nautilia profundicola AmH 7504541 YP_002607191.1 CDS NAMH_0788 NC_012115.1 714406 715125 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 714406..715125 Nautilia profundicola AmH 7504182 YP_002607192.1 CDS rpoN NC_012115.1 715122 716354 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 715122..716354 Nautilia profundicola AmH 7504303 YP_002607193.1 CDS NAMH_0789 NC_012115.1 716351 716770 R identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; putative metalloprotease complement(716351..716770) Nautilia profundicola AmH 7505264 YP_002607194.1 CDS NAMH_0791 NC_012115.1 716943 717611 D identified by match to protein family HMM PF02568; match to protein family HMM PF06508; match to protein family HMM TIGR00364; ExsB protein 716943..717611 Nautilia profundicola AmH 7505353 YP_002607195.1 CDS argB NC_012115.1 717752 718594 D identified by match to protein family HMM PF00696; match to protein family HMM TIGR00761; acetylglutamate kinase 717752..718594 Nautilia profundicola AmH 7505561 YP_002607196.1 CDS NAMH_0793 NC_012115.1 718594 719799 D identified by match to protein family HMM PF00999; putative proton/sodium antiporter 718594..719799 Nautilia profundicola AmH 7504971 YP_002607197.1 CDS NAMH_0794 NC_012115.1 719835 720197 D identified by match to protein family HMM PF02623; hypothetical protein 719835..720197 Nautilia profundicola AmH 7503820 YP_002607198.1 CDS NAMH_0795 NC_012115.1 720259 722286 D identified by match to protein family HMM PF00580; ATP-dependent helicase 720259..722286 Nautilia profundicola AmH 7504079 YP_002607199.1 CDS NAMH_0796 NC_012115.1 722325 723533 D identified by match to protein family HMM PF07690; major facilitator superfamily MFS_1 722325..723533 Nautilia profundicola AmH 7505226 YP_002607200.1 CDS NAMH_0798 NC_012115.1 723533 724114 D identified by match to protein family HMM PF09335; DedA 723533..724114 Nautilia profundicola AmH 7503875 YP_002607201.1 CDS NAMH_0797 NC_012115.1 724104 724451 R hypothetical protein complement(724104..724451) Nautilia profundicola AmH 7504600 YP_002607202.1 CDS NAMH_0799 NC_012115.1 724625 725671 D identified by match to protein family HMM PF03595; C4-dicarboxylate transporter/malic acid transport protein 724625..725671 Nautilia profundicola AmH 7505547 YP_002607203.1 CDS NAMH_0800 NC_012115.1 725807 726268 R pugilistDominant complement(725807..726268) Nautilia profundicola AmH 7504135 YP_002607204.1 CDS NAMH_0801 NC_012115.1 726228 726812 R iron-molybdenum cofactor-binding protein complement(726228..726812) Nautilia profundicola AmH 7505543 YP_002607205.1 CDS NAMH_0802 NC_012115.1 726833 727102 R identified by match to protein family HMM PF02001; DNA-binding protein complement(726833..727102) Nautilia profundicola AmH 7505021 YP_002607206.1 CDS NAMH_0803 NC_012115.1 727222 728892 D hypothetical protein 727222..728892 Nautilia profundicola AmH 7505078 YP_002607207.1 CDS NAMH_0805 NC_012115.1 728892 729788 D hypothetical protein 728892..729788 Nautilia profundicola AmH 7504106 YP_002607208.1 CDS NAMH_0804 NC_012115.1 729781 730527 R identified by match to protein family HMM PF02146; NAD-dependent deacetylase complement(729781..730527) Nautilia profundicola AmH 7504686 YP_002607209.1 CDS NAMH_0806 NC_012115.1 730643 731644 R identified by match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(730643..731644) Nautilia profundicola AmH 7505485 YP_002607210.1 CDS proA NC_012115.1 731865 733100 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 731865..733100 Nautilia profundicola AmH 7504149 YP_002607211.1 CDS NAMH_0808 NC_012115.1 733111 734019 D identified by match to protein family HMM PF02541; putative phosphatase 733111..734019 Nautilia profundicola AmH 7504742 YP_002607212.1 CDS ilvB NC_012115.1 734116 735813 D catalyzes the formation of 2-acetolactate from pyruvate, leucine resistant; also known as acetolactate synthase 3 large subunit; acetolactate synthase 3 catalytic subunit 734116..735813 Nautilia profundicola AmH 7504036 YP_002607213.1 CDS ilvH NC_012115.1 735810 736271 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 735810..736271 Nautilia profundicola AmH 7505102 YP_002607214.1 CDS lpxD NC_012115.1 736557 737531 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 736557..737531 Nautilia profundicola AmH 7504642 YP_002607215.1 CDS NAMH_0812 NC_012115.1 737596 738768 D identified by match to protein family HMM PF00266; match to protein family HMM PF00282; match to protein family HMM PF01212; cysteine desulfurase 737596..738768 Nautilia profundicola AmH 7505549 YP_002607216.1 CDS NAMH_0813 NC_012115.1 738844 739809 D identified by match to protein family HMM PF01106; match to protein family HMM PF01592; match to protein family HMM PF04324; NifU family protein 738844..739809 Nautilia profundicola AmH 7504527 YP_002607217.1 CDS NAMH_0815 NC_012115.1 739895 741805 D identified by match to protein family HMM PF00563; putative diguanylate cyclase/phosphodiesterase 739895..741805 Nautilia profundicola AmH 7504858 YP_002607218.1 CDS NAMH_0814 NC_012115.1 741798 743348 R identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM PF03486; match to protein family HMM PF07992; succinate dehydrogenase flavoprotein subunit complement(741798..743348) Nautilia profundicola AmH 7504297 YP_002607219.1 CDS NAMH_0816 NC_012115.1 743393 744016 D hypothetical protein 743393..744016 Nautilia profundicola AmH 7504229 YP_002607220.1 CDS NAMH_0817 NC_012115.1 744018 745400 D identified by match to protein family HMM PF01565; match to protein family HMM PF02913; glycolate oxidase subunit glcd 744018..745400 Nautilia profundicola AmH 7505354 YP_002607221.1 CDS xth NC_012115.1 745458 746210 D identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III 745458..746210 Nautilia profundicola AmH 7504974 YP_002607222.1 CDS NAMH_0820 NC_012115.1 746218 746802 D identified by match to protein family HMM PF09335; DedA family protein 746218..746802 Nautilia profundicola AmH 7505579 YP_002607223.1 CDS NAMH_0819 NC_012115.1 746792 747832 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; sensory box/ggdef domain protein complement(746792..747832) Nautilia profundicola AmH 7504313 YP_002607224.1 CDS NAMH_0821 NC_012115.1 747835 748116 R identified by match to protein family HMM PF07876; stress responsive A/B Barrel Domain superfamily complement(747835..748116) Nautilia profundicola AmH 7504568 YP_002607225.1 CDS NAMH_0822 NC_012115.1 748113 749279 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(748113..749279) Nautilia profundicola AmH 7505397 YP_002607226.1 CDS NAMH_0823 NC_012115.1 749364 750272 D identified by match to protein family HMM PF03976; PvdS 749364..750272 Nautilia profundicola AmH 7503920 YP_002607227.1 CDS NAMH_0824 NC_012115.1 750315 752672 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF08376; methyl-accepting chemotaxis sensory transducer 750315..752672 Nautilia profundicola AmH 7504393 YP_002607228.1 CDS NAMH_0825 NC_012115.1 752677 753378 R identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine acetyltransferase complement(752677..753378) Nautilia profundicola AmH 7503973 YP_002607229.1 CDS tmk NC_012115.1 753356 753940 R identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041; thymidylate kinase complement(753356..753940) Nautilia profundicola AmH 7504570 YP_002607230.1 CDS coaD NC_012115.1 753940 754404 R identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01510; pantetheine-phosphate adenylyltransferase complement(753940..754404) Nautilia profundicola AmH 7504880 YP_002607231.1 CDS NAMH_0828 NC_012115.1 754404 754919 R identified by match to protein family HMM PF02441; match to protein family HMM TIGR00421; flavoprotein complement(754404..754919) Nautilia profundicola AmH 7504956 YP_002607232.1 CDS NAMH_0829 NC_012115.1 754932 755531 R identified by match to protein family HMM TIGR03170; flagella basal body P-ring formation protein FlgA complement(754932..755531) Nautilia profundicola AmH 7505389 YP_002607233.1 CDS lon NC_012115.1 755544 757868 R identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763; ATP-dependent protease La complement(755544..757868) Nautilia profundicola AmH 7503983 YP_002607234.1 CDS NAMH_0831 NC_012115.1 757878 758504 R putative lipoprotein complement(757878..758504) Nautilia profundicola AmH 7504414 YP_002607235.1 CDS valS NC_012115.1 758497 761073 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(758497..761073) Nautilia profundicola AmH 7505452 YP_002607236.1 CDS NAMH_0833 NC_012115.1 761266 761643 D identified by match to protein family HMM PF02623; hypothetical protein 761266..761643 Nautilia profundicola AmH 7505282 YP_002607237.1 CDS proC NC_012115.1 761640 762377 D identified by match to protein family HMM PF03807; match to protein family HMM TIGR00112; pyrroline-5-carboxylate reductase 761640..762377 Nautilia profundicola AmH 7504826 YP_002607238.1 CDS NAMH_0835 NC_012115.1 762355 763029 D identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; prokaryotic N-terminal methylation motif domain protein 762355..763029 Nautilia profundicola AmH 7504289 YP_002607239.1 CDS NAMH_0836 NC_012115.1 763026 764027 D identified by match to protein family HMM TIGR02532; prepilin-type N-terminal cleavage/methylation domain protein 763026..764027 Nautilia profundicola AmH 7505575 YP_002607240.1 CDS NAMH_0837 NC_012115.1 764024 764461 D identified by glimmer; putative; hypothetical protein 764024..764461 Nautilia profundicola AmH 7504634 YP_002607241.1 CDS NAMH_0838 NC_012115.1 764531 765031 D identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; sigma 54 modulation protein/ribosomal protein S30EA 764531..765031 Nautilia profundicola AmH 7505041 YP_002607242.1 CDS rpmH NC_012115.1 765069 765203 D identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030; ribosomal protein L34 765069..765203 Nautilia profundicola AmH 7503896 YP_002607243.1 CDS NAMH_0840 NC_012115.1 765371 765490 D hypothetical protein 765371..765490 Nautilia profundicola AmH 7505017 YP_002607244.1 CDS NAMH_0841 NC_012115.1 765441 765785 D identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein 765441..765785 Nautilia profundicola AmH 7503917 YP_002607245.1 CDS NAMH_0842 NC_012115.1 765775 767316 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 765775..767316 Nautilia profundicola AmH 7504738 YP_002607246.1 CDS NAMH_0843 NC_012115.1 767313 767963 D hypothetical protein 767313..767963 Nautilia profundicola AmH 7504293 YP_002607247.1 CDS trmE NC_012115.1 767932 769260 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 767932..769260 Nautilia profundicola AmH 7505583 YP_002607248.1 CDS NAMH_0846 NC_012115.1 769278 769670 D hypothetical protein 769278..769670 Nautilia profundicola AmH 7504046 YP_002607249.1 CDS NAMH_0845 NC_012115.1 769662 772682 R NAD-glutamate dehydrogenase family protein complement(769662..772682) Nautilia profundicola AmH 7504192 YP_002607250.1 CDS NAMH_0847 NC_012115.1 772823 773614 R identified by match to protein family HMM PF01875; hypothetical protein complement(772823..773614) Nautilia profundicola AmH 7504271 YP_002607251.1 CDS NAMH_0848 NC_012115.1 773628 774629 R identified by match to protein family HMM PF04055; radical SAM complement(773628..774629) Nautilia profundicola AmH 7504466 YP_002607252.1 CDS NAMH_0849 NC_012115.1 774716 775702 R putative dihydroorotase complement(774716..775702) Nautilia profundicola AmH 7503881 YP_002607253.1 CDS NAMH_0850 NC_012115.1 775755 775937 D identified by glimmer; putative; hypothetical protein 775755..775937 Nautilia profundicola AmH 7504722 YP_002607254.1 CDS NAMH_0851 NC_012115.1 775934 776413 D identified by glimmer; putative; hypothetical protein 775934..776413 Nautilia profundicola AmH 7504012 YP_002607255.1 CDS purD NC_012115.1 776489 777742 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 776489..777742 Nautilia profundicola AmH 7504197 YP_002607256.1 CDS NAMH_0853 NC_012115.1 777772 778218 D identified by match to protein family HMM PF06271; RDD protein 777772..778218 Nautilia profundicola AmH 7504269 YP_002607257.1 CDS NAMH_0854 NC_012115.1 778205 780193 D identified by match to protein family HMM PF04453; putative periplasmic protein 778205..780193 Nautilia profundicola AmH 7505309 YP_002607258.1 CDS NAMH_0855 NC_012115.1 780190 781593 D identified by match to protein family HMM PF02470; mce related protein 780190..781593 Nautilia profundicola AmH 7505109 YP_002607259.1 CDS NAMH_0856 NC_012115.1 781617 781844 D identified by match to protein family HMM PF00226; dnajb11 protein 781617..781844 Nautilia profundicola AmH 7504413 YP_002607260.1 CDS NAMH_0857 NC_012115.1 781846 782439 D hypothetical protein 781846..782439 Nautilia profundicola AmH 7504857 YP_002607261.1 CDS NAMH_0858 NC_012115.1 782439 783794 D an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01138; match to protein family HMM PF03726; polyribonucleotide nucleotidyltransferase 782439..783794 Nautilia profundicola AmH 7504506 YP_002607262.1 CDS NAMH_0859 NC_012115.1 784599 785702 D identified by match to protein family HMM PF00155; hypothetical protein 784599..785702 Nautilia profundicola AmH 7504666 YP_002607263.1 CDS NAMH_0860 NC_012115.1 785699 786160 D identified by glimmer; putative; hypothetical protein 785699..786160 Nautilia profundicola AmH 7505280 YP_002607264.1 CDS murC NC_012115.1 786160 787464 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 786160..787464 Nautilia profundicola AmH 7505091 YP_002607265.1 CDS NAMH_0862 NC_012115.1 787465 787590 D identified by glimmer; putative; hypothetical protein 787465..787590 Nautilia profundicola AmH 7504479 YP_002607266.1 CDS NAMH_0863 NC_012115.1 787611 787856 D hypothetical protein 787611..787856 Nautilia profundicola AmH 7504870 YP_002607267.1 CDS NAMH_0865 NC_012115.1 787866 788543 D identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035; amino acid racemase 787866..788543 Nautilia profundicola AmH 7505060 YP_002607268.1 CDS NAMH_0864 NC_012115.1 788540 790318 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(788540..790318) Nautilia profundicola AmH 7505027 YP_002607269.1 CDS NAMH_0866 NC_012115.1 790320 791471 R identified by match to protein family HMM PF00675; match to protein family HMM PF05193; processing protease complement(790320..791471) Nautilia profundicola AmH 7505294 YP_002607270.1 CDS NAMH_0867 NC_012115.1 791487 792047 R hypothetical protein complement(791487..792047) Nautilia profundicola AmH 7504432 YP_002607271.1 CDS mraW NC_012115.1 792104 793024 D identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 792104..793024 Nautilia profundicola AmH 7505576 YP_002607272.1 CDS NAMH_0869 NC_012115.1 793027 793320 D hypothetical protein 793027..793320 Nautilia profundicola AmH 7504601 YP_002607273.1 CDS NAMH_0870 NC_012115.1 793373 796444 D identified by match to protein family HMM PF00873; acriflavin resistance protein 793373..796444 Nautilia profundicola AmH 7504872 YP_002607274.1 CDS NAMH_0871 NC_012115.1 796460 797686 D identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; hypothetical protein 796460..797686 Nautilia profundicola AmH 7504397 YP_002607275.1 CDS NAMH_0872 NC_012115.1 797670 799154 D identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF07728; ATPase Zn protease 797670..799154 Nautilia profundicola AmH 7504478 YP_002607276.1 CDS NAMH_0873 NC_012115.1 799141 799626 D hypothetical protein 799141..799626 Nautilia profundicola AmH 7504333 YP_002607277.1 CDS NAMH_0874 NC_012115.1 799628 800743 D identified by match to protein family HMM PF01699; putative calcium/proton antiporter 799628..800743 Nautilia profundicola AmH 7504524 YP_002607278.1 CDS NAMH_0875 NC_012115.1 800848 801933 D identified by match to protein family HMM PF03480; match to protein family HMM TIGR01409; twin-arginine translocation pathway signal 800848..801933 Nautilia profundicola AmH 7504624 YP_002607279.1 CDS NAMH_0876 NC_012115.1 801946 802572 R identified by match to protein family HMM PF00899; uba/thif-type NAD/fad binding fold protein complement(801946..802572) Nautilia profundicola AmH 7505084 YP_002607280.1 CDS NAMH_0877 NC_012115.1 802562 803806 R identified by match to protein family HMM PF02624; match to protein family HMM TIGR00702; hypothetical protein complement(802562..803806) Nautilia profundicola AmH 7504166 YP_002607281.1 CDS surE NC_012115.1 803799 804569 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(803799..804569) Nautilia profundicola AmH 7504735 YP_002607282.1 CDS NAMH_0879 NC_012115.1 804594 805100 D identified by glimmer; putative; hypothetical protein 804594..805100 Nautilia profundicola AmH 7504236 YP_002607283.1 CDS NAMH_0880 NC_012115.1 805120 805809 D identified by match to protein family HMM PF00300; match to protein family HMM TIGR01258; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 805120..805809 Nautilia profundicola AmH 7505036 YP_002607284.1 CDS NAMH_0881 NC_012115.1 805828 806547 R identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245; hypothetical protein complement(805828..806547) Nautilia profundicola AmH 7504083 YP_002607285.1 CDS hisD NC_012115.1 806618 807907 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 806618..807907 Nautilia profundicola AmH 7504126 YP_002607286.1 CDS NAMH_0883 NC_012115.1 807908 808354 D identified by glimmer; putative; hypothetical protein 807908..808354 Nautilia profundicola AmH 7504940 YP_002607287.1 CDS rpsO NC_012115.1 808427 808702 R identified by match to protein family HMM PF00312; match to protein family HMM TIGR00952; 30S ribosomal protein S15 complement(808427..808702) Nautilia profundicola AmH 7503817 YP_002607288.1 CDS NAMH_0885 NC_012115.1 808824 810674 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; PAS/PAC sensor signal transduction histidine kinase 808824..810674 Nautilia profundicola AmH 7503907 YP_002607289.1 CDS NAMH_0886 NC_012115.1 810715 811131 D identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; transcriptional regulator, BadM/Rrf2 family 810715..811131 Nautilia profundicola AmH 7505418 YP_002607290.1 CDS flhA NC_012115.1 811262 813313 D identified by match to protein family HMM PF00771; match to protein family HMM TIGR01398; flagellar biosynthesis protein FlhA 811262..813313 Nautilia profundicola AmH 7505458 YP_002607291.1 CDS NAMH_0888 NC_012115.1 813315 814019 R identified by match to protein family HMM PF02390; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR00740; putative methyltransferase complement(813315..814019) Nautilia profundicola AmH 7505044 YP_002607292.1 CDS NAMH_0889 NC_012115.1 814070 815332 D identified by match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM TIGR01326; O-acetylhomoserine sulfhydrylase: MetY 814070..815332 Nautilia profundicola AmH 7504096 YP_002607293.1 CDS NAMH_0890 NC_012115.1 815316 817538 D identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase/phosphodiesterase 815316..817538 Nautilia profundicola AmH 7505508 YP_002607294.1 CDS metX NC_012115.1 817564 818670 D identified by match to protein family HMM PF00561; match to protein family HMM TIGR01392; homoserine O-acetyltransferase 817564..818670 Nautilia profundicola AmH 7504911 YP_002607295.1 CDS NAMH_0892 NC_012115.1 818670 818843 D hypothetical protein 818670..818843 Nautilia profundicola AmH 7505128 YP_002607296.1 CDS NAMH_0894 NC_012115.1 818840 819613 D identified by match to protein family HMM PF00795; hydrolase, carbon-nitrogen family 818840..819613 Nautilia profundicola AmH 7503887 YP_002607297.1 CDS NAMH_0893 NC_012115.1 819610 820656 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423; hypothetical protein complement(819610..820656) Nautilia profundicola AmH 7504010 YP_002607298.1 CDS NAMH_0895 NC_012115.1 820741 821622 D identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 820741..821622 Nautilia profundicola AmH 7505015 YP_002607299.1 CDS cvpA NC_012115.1 821624 822175 D identified by match to protein family HMM PF02674; CvpA family protein 821624..822175 Nautilia profundicola AmH 7504719 YP_002607300.1 CDS lysS NC_012115.1 822168 823676 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 822168..823676 Nautilia profundicola AmH 7504263 YP_002607301.1 CDS glyA NC_012115.1 823691 824938 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 823691..824938 Nautilia profundicola AmH 7504193 YP_002607302.1 CDS NAMH_0899 NC_012115.1 824978 825526 D hypothetical protein 824978..825526 Nautilia profundicola AmH 7505553 YP_002607303.1 CDS NAMH_0900 NC_012115.1 825542 826204 D identified by match to protein family HMM PF05036; hypothetical protein 825542..826204 Nautilia profundicola AmH 7504525 YP_002607304.1 CDS NAMH_0901 NC_012115.1 826204 827601 D identified by match to protein family HMM PF00425; match to protein family HMM PF04715; anthranilate synthase component I 826204..827601 Nautilia profundicola AmH 7504608 YP_002607305.1 CDS NAMH_0902 NC_012115.1 827611 828987 D identified by match to protein family HMM PF01740; putative CheC, inhibitor of MCP methylation 827611..828987 Nautilia profundicola AmH 7505080 YP_002607306.1 CDS aroE NC_012115.1 828997 829764 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 828997..829764 Nautilia profundicola AmH 7504997 YP_002607307.1 CDS murA NC_012115.1 829756 831024 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(829756..831024) Nautilia profundicola AmH 7505497 YP_002607308.1 CDS NAMH_0905 NC_012115.1 831017 831862 R identified by match to protein family HMM PF01261; match to protein family HMM TIGR00587; apurinic/apyrimidinic endonuclease complement(831017..831862) Nautilia profundicola AmH 7505450 YP_002607309.1 CDS NAMH_0906 NC_012115.1 831907 832242 R identified by match to protein family HMM PF01230; Hit family protein complement(831907..832242) Nautilia profundicola AmH 7504125 YP_002607310.1 CDS pheS NC_012115.1 832297 833283 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 832297..833283 Nautilia profundicola AmH 7504014 YP_002607311.1 CDS pheT NC_012115.1 833280 835529 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 833280..835529 Nautilia profundicola AmH 7505445 YP_002607312.1 CDS aroA NC_012115.1 835526 836821 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 835526..836821 Nautilia profundicola AmH 7504477 YP_002607313.1 CDS ispH NC_012115.1 836811 837641 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 836811..837641 Nautilia profundicola AmH 7504787 YP_002607314.1 CDS NAMH_0911 NC_012115.1 837638 838798 D identified by match to protein family HMM PF00575; 30S ribosomal protein S1 837638..838798 Nautilia profundicola AmH 7503955 YP_002607315.1 CDS NAMH_0912 NC_012115.1 838795 839235 D identified by glimmer; putative; hypothetical protein 838795..839235 Nautilia profundicola AmH 7504360 YP_002607316.1 CDS serA NC_012115.1 839236 840804 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 839236..840804 Nautilia profundicola AmH 7503898 YP_002607317.1 CDS efp NC_012115.1 840875 841438 D identified by match to protein family HMM PF01132; match to protein family HMM PF08207; match to protein family HMM PF09285; match to protein family HMM TIGR00038; translation elongation factor P 840875..841438 Nautilia profundicola AmH 7504797 YP_002607318.1 CDS apt NC_012115.1 841486 842016 D identified by match to protein family HMM PF00156; match to protein family HMM TIGR01090; adenine phosphoribosyltransferase 841486..842016 Nautilia profundicola AmH 7504518 YP_002607319.1 CDS trpB NC_012115.1 842052 843251 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 842052..843251 Nautilia profundicola AmH 7505439 YP_002607320.1 CDS NAMH_0917 NC_012115.1 843254 843922 D integral membrane protein 843254..843922 Nautilia profundicola AmH 7504099 YP_002607321.1 CDS NAMH_0919 NC_012115.1 844197 845567 D identified by match to protein family HMM PF00883; match to protein family HMM PF02789; cytosol aminopeptidase 844197..845567 Nautilia profundicola AmH 7505035 YP_002607322.1 CDS ychF NC_012115.1 845709 846803 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 845709..846803 Nautilia profundicola AmH 7504789 YP_002607323.1 CDS NAMH_0921 NC_012115.1 846800 847630 D RNA binding S1 846800..847630 Nautilia profundicola AmH 7504469 YP_002607324.1 CDS NAMH_0922 NC_012115.1 847641 849299 D molybdopterin oxidoreductase 847641..849299 Nautilia profundicola AmH 7504300 YP_002607325.1 CDS NAMH_0923 NC_012115.1 849286 849684 D identified by match to protein family HMM PF02810; protein translocase subunit SecA 849286..849684 Nautilia profundicola AmH 7503944 YP_002607326.1 CDS NAMH_0924 NC_012115.1 849706 850155 D identified by glimmer; putative; hypothetical protein 849706..850155 Nautilia profundicola AmH 7503975 YP_002607327.1 CDS NAMH_0925 NC_012115.1 850202 850699 D DapE downstream ORF 2 850202..850699 Nautilia profundicola AmH 7504349 YP_002607328.1 CDS gph NC_012115.1 850727 851359 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; phosphoglycolate phosphatase 850727..851359 Nautilia profundicola AmH 7504848 YP_002607329.1 CDS NAMH_0928 NC_012115.1 851356 852723 D identified by match to protein family HMM PF01266; putative FAD dependent oxidoreductase 851356..852723 Nautilia profundicola AmH 7504509 YP_002607330.1 CDS recR NC_012115.1 852713 853276 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(852713..853276) Nautilia profundicola AmH 7503838 YP_002607331.1 CDS msrB NC_012115.1 853326 853712 D identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357; methionine-R-sulfoxide reductase 853326..853712 Nautilia profundicola AmH 7504456 YP_002607332.1 CDS NAMH_0930 NC_012115.1 853702 854433 D identified by match to protein family HMM PF05057; 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase 853702..854433 Nautilia profundicola AmH 7504798 YP_002607333.1 CDS NAMH_0931 NC_012115.1 854421 854927 D identified by match to protein family HMM PF01661; appr-1-p processing enzyme family protein 854421..854927 Nautilia profundicola AmH 7504563 YP_002607334.1 CDS NAMH_0932 NC_012115.1 854920 855213 D identified by glimmer; putative; hypothetical protein 854920..855213 Nautilia profundicola AmH 7505086 YP_002607335.1 CDS NAMH_0933 NC_012115.1 855249 855560 D identified by match to protein family HMM PF01910; match to protein family HMM TIGR00106; hypothetical protein 855249..855560 Nautilia profundicola AmH 7504895 YP_002607336.1 CDS NAMH_0934 NC_012115.1 855553 856269 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 855553..856269 Nautilia profundicola AmH 7504554 YP_002607337.1 CDS NAMH_0935 NC_012115.1 856327 856686 D hypothetical protein 856327..856686 Nautilia profundicola AmH 7503977 YP_002607338.1 CDS NAMH_0936 NC_012115.1 856720 857205 D identified by match to protein family HMM PF01230; hit family protein 856720..857205 Nautilia profundicola AmH 7504112 YP_002607339.1 CDS NAMH_0937 NC_012115.1 857219 857749 R identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686; PhnA protein complement(857219..857749) Nautilia profundicola AmH 7505453 YP_002607340.1 CDS NAMH_0938 NC_012115.1 857856 858017 D putative transposase 857856..858017 Nautilia profundicola AmH 7504117 YP_002607341.1 CDS NAMH_0939 NC_012115.1 858082 858552 D identified by glimmer; putative; hypothetical protein 858082..858552 Nautilia profundicola AmH 7505103 YP_002607342.1 CDS NAMH_0940 NC_012115.1 858651 859361 R identified by match to protein family HMM PF01904; hypothetical protein complement(858651..859361) Nautilia profundicola AmH 7504328 YP_002607343.1 CDS NAMH_0941 NC_012115.1 859361 860653 R identified by match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00786; membrane protein complement(859361..860653) Nautilia profundicola AmH 7504586 YP_002607344.1 CDS NAMH_0942 NC_012115.1 860653 861264 R identified by match to protein family HMM PF04290; tripartite ATP-independent periplasmic transporter, DctQ component complement(860653..861264) Nautilia profundicola AmH 7505600 YP_002607345.1 CDS NAMH_0943 NC_012115.1 861274 862686 R identified by match to protein family HMM PF02875; match to protein family HMM PF08245; D-alanyl-d-alanine-adding enzyme complement(861274..862686) Nautilia profundicola AmH 7504754 YP_002607346.1 CDS NAMH_0944 NC_012115.1 862688 862960 R identified by match to protein family HMM PF00708; acylphosphatase complement(862688..862960) Nautilia profundicola AmH 7505315 YP_002607347.1 CDS ddl NC_012115.1 862975 864009 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A complement(862975..864009) Nautilia profundicola AmH 7505270 YP_002607348.1 CDS ruvA NC_012115.1 864006 864560 R identified by match to protein family HMM PF01330; match to protein family HMM PF07499; match to protein family HMM TIGR00084; holliday junction DNA helicase RuvA complement(864006..864560) Nautilia profundicola AmH 7503988 YP_002607349.1 CDS NAMH_0947 NC_012115.1 864544 866424 R hypothetical protein complement(864544..866424) Nautilia profundicola AmH 7504346 YP_002607350.1 CDS NAMH_0948 NC_012115.1 866411 866935 R identified by glimmer; putative; hypothetical protein complement(866411..866935) Nautilia profundicola AmH 7503979 YP_002607351.1 CDS mviN NC_012115.1 866838 867839 D identified by match to protein family HMM PF03023; virulence factor MviN protein 866838..867839 Nautilia profundicola AmH 7504713 YP_002607352.1 CDS cysS NC_012115.1 867849 869243 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 867849..869243 Nautilia profundicola AmH 7504510 YP_002607353.1 CDS NAMH_0950 NC_012115.1 869240 869791 R hypothetical protein complement(869240..869791) Nautilia profundicola AmH 7503900 YP_002607354.1 CDS pyrD NC_012115.1 869843 870922 D identified by match to protein family HMM PF01180; match to protein family HMM TIGR01036; dihydroorotate oxidase 869843..870922 Nautilia profundicola AmH 7504407 YP_002607355.1 CDS NAMH_0952 NC_012115.1 870919 872295 R identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; NADH oxidase complement(870919..872295) Nautilia profundicola AmH 7504499 YP_002607356.1 CDS NAMH_0954 NC_012115.1 872347 873573 D identified by match to protein family HMM PF00675; match to protein family HMM PF05193; peptidase, M16 family 872347..873573 Nautilia profundicola AmH 7504863 YP_002607357.1 CDS NAMH_0955 NC_012115.1 873662 873874 D putative transcriptional regulator 873662..873874 Nautilia profundicola AmH 7504258 YP_002607358.1 CDS NAMH_0956 NC_012115.1 873864 874922 D identified by match to protein family HMM PF01555; DNA methylase 873864..874922 Nautilia profundicola AmH 7504179 YP_002607359.1 CDS NAMH_0957 NC_012115.1 874925 875518 R type II restriction enzyme MjaI complement(874925..875518) Nautilia profundicola AmH 7504204 YP_002607360.1 CDS NAMH_0958 NC_012115.1 875531 876052 R identified by glimmer; putative; hypothetical protein complement(875531..876052) Nautilia profundicola AmH 7504528 YP_002607361.1 CDS NAMH_0959 NC_012115.1 876049 876708 R identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein complement(876049..876708) Nautilia profundicola AmH 7504865 YP_002607362.1 CDS NAMH_0960 NC_012115.1 876710 877753 R identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054; putative membrane-associated zinc metalloprotease complement(876710..877753) Nautilia profundicola AmH 7503962 YP_002607363.1 CDS pgsA NC_012115.1 877750 878343 R identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(877750..878343) Nautilia profundicola AmH 7504356 YP_002607364.1 CDS NAMH_0962 NC_012115.1 878343 879122 R Acts on the hydroxyl group at position 7 of the steroid frame; 7-alpha-hydroxysteroid dehydrogenase complement(878343..879122) Nautilia profundicola AmH 7503856 YP_002607365.1 CDS dapA NC_012115.1 879132 879998 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(879132..879998) Nautilia profundicola AmH 7505298 YP_002607366.1 CDS NAMH_0964 NC_012115.1 880115 881308 R identified by match to protein family HMM PF02687; efflux ABC transporter, permease protein complement(880115..881308) Nautilia profundicola AmH 7505216 YP_002607367.1 CDS NAMH_0967 NC_012115.1 884073 884570 D identified by match to protein family HMM PF03548; outer-membrane lipoprotein carrier protein 884073..884570 Nautilia profundicola AmH 7504531 YP_002607368.1 CDS NAMH_0966 NC_012115.1 884554 885333 R identified by match to protein family HMM PF00459; inositol monophosphatase 3 (IMPase 3) (IMP 3) (Inositol-1(or 4)-monophosphatase 3) complement(884554..885333) Nautilia profundicola AmH 7503930 YP_002607369.1 CDS NAMH_0968 NC_012115.1 885355 886233 R identified by match to protein family HMM PF01435; match to protein family HMM PF06509; heat shock protein HtpX complement(885355..886233) Nautilia profundicola AmH 7504707 YP_002607370.1 CDS NAMH_0969 NC_012115.1 886317 887597 R hypothetical protein complement(886317..887597) Nautilia profundicola AmH 7504795 YP_002607371.1 CDS NAMH_0970 NC_012115.1 887675 889204 R identified by match to protein family HMM PF03092; hypothetical protein complement(887675..889204) Nautilia profundicola AmH 7503839 YP_002607372.1 CDS bioA NC_012115.1 889354 890649 R catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine--8-amino-7-oxononanoate transaminase complement(889354..890649) Nautilia profundicola AmH 7504962 YP_002607373.1 CDS NAMH_0972 NC_012115.1 890727 892163 D hypothetical protein 890727..892163 Nautilia profundicola AmH 7505275 YP_002607374.1 CDS ftsA NC_012115.1 892174 893490 D identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA 892174..893490 Nautilia profundicola AmH 7503941 YP_002607375.1 CDS ftsZ NC_012115.1 893500 894606 D identified by match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065; cell division protein FtsZ 893500..894606 Nautilia profundicola AmH 7504254 YP_002607376.1 CDS NAMH_0975 NC_012115.1 894613 895392 R identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056; ABC transporter permease complement(894613..895392) Nautilia profundicola AmH 7505511 YP_002607377.1 CDS fliL NC_012115.1 895442 895963 D identified by match to protein family HMM PF03748; flagellar basal body-associated protein FliL 895442..895963 Nautilia profundicola AmH 7504423 YP_002607378.1 CDS acpS NC_012115.1 895963 896304 D identified by match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556; holo-ACP synthase 895963..896304 Nautilia profundicola AmH 7505090 YP_002607379.1 CDS NAMH_0979 NC_012115.1 896483 897064 D putative lipoprotein 896483..897064 Nautilia profundicola AmH 7505163 YP_002607380.1 CDS NAMH_0980 NC_012115.1 897067 897855 R identified by glimmer; putative; hypothetical protein complement(897067..897855) Nautilia profundicola AmH 7504817 YP_002607381.1 CDS NAMH_0981 NC_012115.1 897866 899890 R identified by match to protein family HMM TIGR00229; putative signal domain protein complement(897866..899890) Nautilia profundicola AmH 7505398 YP_002607382.1 CDS hemD NC_012115.1 900208 900846 R identified by match to protein family HMM PF02602; uroporphyrinogen-III synthase complement(900208..900846) Nautilia profundicola AmH 7504941 YP_002607383.1 CDS guaA NC_012115.1 900866 902401 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(900866..902401) Nautilia profundicola AmH 7504072 YP_002607384.1 CDS NAMH_0984 NC_012115.1 902468 903778 R Na+/H+ antiporter NhaD complement(902468..903778) Nautilia profundicola AmH 7504718 YP_002607385.1 CDS NAMH_0985 NC_012115.1 903771 905198 R identified by match to protein family HMM PF00890; L-aspartate oxidase complement(903771..905198) Nautilia profundicola AmH 7503987 YP_002607386.1 CDS NAMH_0986 NC_012115.1 905206 905373 R putative lipoprotein complement(905206..905373) Nautilia profundicola AmH 7504382 YP_002607387.1 CDS NAMH_0988 NC_012115.1 905572 905766 D identified by glimmer; putative; hypothetical protein 905572..905766 Nautilia profundicola AmH 7504646 YP_002607388.1 CDS NAMH_0987 NC_012115.1 905749 906150 R identified by match to protein family HMM PF01842; ACT domain protein complement(905749..906150) Nautilia profundicola AmH 7504057 YP_002607389.1 CDS NAMH_0989 NC_012115.1 906152 907447 R coenzyme f390 synthetase II complement(906152..907447) Nautilia profundicola AmH 7505124 YP_002607390.1 CDS NAMH_0990 NC_012115.1 907487 907894 R identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; phenylacetic acid degradation protein PaaI complement(907487..907894) Nautilia profundicola AmH 7505584 YP_002607391.1 CDS NAMH_0991 NC_012115.1 907881 908405 R identified by match to protein family HMM PF01558; indolepyruvate oxidoreductase subunit IorB complement(907881..908405) Nautilia profundicola AmH 7504620 YP_002607392.1 CDS NAMH_0992 NC_012115.1 908468 910270 R identified by match to protein family HMM PF00037; match to protein family HMM PF02775; indolepyruvate oxidoreductase subunit IorA complement(908468..910270) Nautilia profundicola AmH 7504706 YP_002607393.1 CDS NAMH_0993 NC_012115.1 910384 910557 D hypothetical protein 910384..910557 Nautilia profundicola AmH 7503992 YP_002607394.1 CDS NAMH_0994 NC_012115.1 910554 912197 D identified by match to protein family HMM PF00474; sodium/proline symporter 910554..912197 Nautilia profundicola AmH 7504693 YP_002607395.1 CDS NAMH_0995 NC_012115.1 912243 912503 D identified by glimmer; putative; hypothetical protein 912243..912503 Nautilia profundicola AmH 7504595 YP_002607396.1 CDS uvrC NC_012115.1 912712 914547 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 912712..914547 Nautilia profundicola AmH 7505077 YP_002607397.1 CDS NAMH_0997 NC_012115.1 914544 915047 D identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481; hypothetical protein 914544..915047 Nautilia profundicola AmH 7504765 YP_002607398.1 CDS NAMH_0998 NC_012115.1 915191 915511 D hypothetical protein 915191..915511 Nautilia profundicola AmH 7503948 YP_002607399.1 CDS ribF NC_012115.1 915508 916275 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 915508..916275 Nautilia profundicola AmH 7505056 YP_002607400.1 CDS NAMH_1000 NC_012115.1 916276 916824 R hypothetical protein complement(916276..916824) Nautilia profundicola AmH 7505369 YP_002607401.1 CDS NAMH_1001 NC_012115.1 916817 917206 R hypothetical protein complement(916817..917206) Nautilia profundicola AmH 7504800 YP_002607402.1 CDS NAMH_1002 NC_012115.1 917207 918571 R methyl-accepting chemotaxis protein complement(917207..918571) Nautilia profundicola AmH 7504238 YP_002607403.1 CDS NAMH_1003 NC_012115.1 918687 920099 R methyl-accepting chemotaxis protein complement(918687..920099) Nautilia profundicola AmH 7505055 YP_002607404.1 CDS NAMH_1004 NC_012115.1 920101 920490 R hypothetical protein complement(920101..920490) Nautilia profundicola AmH 7505507 YP_002607405.1 CDS NAMH_1005 NC_012115.1 920663 922603 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 920663..922603 Nautilia profundicola AmH 7503836 YP_002607406.1 CDS NAMH_1006 NC_012115.1 922606 923406 D identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765; ribonuclease BN 922606..923406 Nautilia profundicola AmH 7504086 YP_002607407.1 CDS NAMH_1007 NC_012115.1 923494 925023 D identified by match to protein family HMM PF00374; periplasmic [NiFeSe] hydrogenase large subunit 923494..925023 Nautilia profundicola AmH 7505429 YP_002607408.1 CDS NAMH_1008 NC_012115.1 925033 925953 D identified by match to protein family HMM PF01058; match to protein family HMM PF08425; match to protein family HMM TIGR00391; hydrogenase 925033..925953 Nautilia profundicola AmH 7504938 YP_002607409.1 CDS NAMH_1009 NC_012115.1 925956 927719 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer 925956..927719 Nautilia profundicola AmH 7503853 YP_002607410.1 CDS ppa NC_012115.1 927750 928268 D identified by match to protein family HMM PF00719; inorganic pyrophosphatase 927750..928268 Nautilia profundicola AmH 7504480 YP_002607411.1 CDS acsA NC_012115.1 928460 930415 D Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 928460..930415 Nautilia profundicola AmH 7504701 YP_002607412.1 CDS NAMH_1012 NC_012115.1 930417 931781 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; histidine kinase 930417..931781 Nautilia profundicola AmH 7504543 YP_002607413.1 CDS NAMH_1013 NC_012115.1 931762 932412 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two component transcriptional regulator, winged helix family 931762..932412 Nautilia profundicola AmH 7504345 YP_002607414.1 CDS NAMH_1014 NC_012115.1 932773 933105 D identified by match to protein family HMM PF04341; inner membrane protein YjcH 932773..933105 Nautilia profundicola AmH 7503828 YP_002607415.1 CDS actP NC_012115.1 933102 934748 D member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 933102..934748 Nautilia profundicola AmH 7505040 YP_002607416.1 CDS NAMH_1016 NC_012115.1 934757 936496 D identified by match to protein family HMM PF00571; match to protein family HMM PF03445; cyclic nucleotide-binding domain (cNMP-BD) protein 934757..936496 Nautilia profundicola AmH 7505333 YP_002607417.1 CDS NAMH_1017 NC_012115.1 936496 937107 D identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; exonuclease 936496..937107 Nautilia profundicola AmH 7504444 YP_002607418.1 CDS NAMH_1018 NC_012115.1 937340 937564 D identified by match to protein family HMM PF04277; match to protein family HMM TIGR01195; oxaloacetate decarboxylase, gamma subunit 937340..937564 Nautilia profundicola AmH 7504753 YP_002607419.1 CDS NAMH_1019 NC_012115.1 937554 939320 D identified by match to protein family HMM PF00364; match to protein family HMM PF00682; biotin/lipoyl attachment 937554..939320 Nautilia profundicola AmH 7504542 YP_002607420.1 CDS NAMH_1020 NC_012115.1 939321 940628 D identified by match to protein family HMM PF03977; match to protein family HMM TIGR01109; oxaloacetate decarboxylase beta chain 939321..940628 Nautilia profundicola AmH 7505523 YP_002607421.1 CDS NAMH_1021 NC_012115.1 940632 941384 R identified by glimmer; putative; hypothetical protein complement(940632..941384) Nautilia profundicola AmH 7504590 YP_002607422.1 CDS NAMH_1022 NC_012115.1 941381 942526 R hydrolase complement(941381..942526) Nautilia profundicola AmH 7504887 YP_002607423.1 CDS NAMH_1023 NC_012115.1 942578 942853 R identified by match to protein family HMM PF06429; flagellar hook FlgE complement(942578..942853) Nautilia profundicola AmH 7503866 YP_002607424.1 CDS argH NC_012115.1 942930 944306 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 942930..944306 Nautilia profundicola AmH 7505082 YP_002607425.1 CDS NAMH_1025 NC_012115.1 944299 944772 D identified by match to protein family HMM PF02566; hypothetical protein 944299..944772 Nautilia profundicola AmH 7503972 YP_002607426.1 CDS NAMH_1026 NC_012115.1 944836 945240 D identified by match to protein family HMM PF08238; beta-lactamase HcpA 944836..945240 Nautilia profundicola AmH 7504913 YP_002607427.1 CDS NAMH_1028 NC_012115.1 945240 945929 D identified by match to protein family HMM PF00149; protein phosphatase 945240..945929 Nautilia profundicola AmH 7504884 YP_002607428.1 CDS NAMH_1027 NC_012115.1 945926 946807 R identified by glimmer; putative; hypothetical protein complement(945926..946807) Nautilia profundicola AmH 7505405 YP_002607429.1 CDS NAMH_1030 NC_012115.1 946872 947000 D identified by glimmer; putative; hypothetical protein 946872..947000 Nautilia profundicola AmH 7504127 YP_002607430.1 CDS NAMH_1029 NC_012115.1 946976 947566 R identified by match to protein family HMM PF01810; L-lysine/ homoserine-homoserine lactone exporter family complement(946976..947566) Nautilia profundicola AmH 7503991 YP_002607431.1 CDS NAMH_1031 NC_012115.1 947608 948687 D identified by match to protein family HMM PF00155; aminotransferase 947608..948687 Nautilia profundicola AmH 7504676 YP_002607432.1 CDS NAMH_1032 NC_012115.1 948798 949103 D identified by match to protein family HMM PF00137; match to protein family HMM TIGR01260; ATP synthase C chain 948798..949103 Nautilia profundicola AmH 7504384 YP_002607433.1 CDS NAMH_1034 NC_012115.1 949914 951593 R an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; hypothetical protein complement(949914..951593) Nautilia profundicola AmH 7505191 YP_002607434.1 CDS NAMH_1035 NC_012115.1 951583 953496 R identified by match to protein family HMM PF07693; KAP family P-loop domain protein complement(951583..953496) Nautilia profundicola AmH 7505274 YP_002607435.1 CDS NAMH_1036 NC_012115.1 953605 953823 R identified by glimmer; putative; hypothetical protein complement(953605..953823) Nautilia profundicola AmH 7504341 YP_002607436.1 CDS NAMH_1037 NC_012115.1 954472 954597 R identified by glimmer; putative; hypothetical protein complement(954472..954597) Nautilia profundicola AmH 7504130 YP_002607437.1 CDS NAMH_1038 NC_012115.1 954727 955563 R hypothetical protein complement(954727..955563) Nautilia profundicola AmH 7505269 YP_002607438.1 CDS NAMH_1039 NC_012115.1 956178 957068 R identified by glimmer; putative; hypothetical protein complement(956178..957068) Nautilia profundicola AmH 7505329 YP_002607439.1 CDS NAMH_1040 NC_012115.1 957061 958611 R identified by match to protein family HMM PF02463; ATPase complement(957061..958611) Nautilia profundicola AmH 7504912 YP_002607440.1 CDS NAMH_1041 NC_012115.1 958657 959484 R identified by match to protein family HMM PF01513; inorganic polyphosphate/ATP-NAD kinase complement(958657..959484) Nautilia profundicola AmH 7503905 YP_002607441.1 CDS NAMH_1043 NC_012115.1 959612 960109 D identified by match to protein family HMM PF00210; match to protein family HMM PF02915; bacterioferritin 959612..960109 Nautilia profundicola AmH 7504463 YP_002607442.1 CDS NAMH_1042 NC_012115.1 960093 960686 R identified by glimmer; putative; hypothetical protein complement(960093..960686) Nautilia profundicola AmH 7504685 YP_002607443.1 CDS NAMH_1044 NC_012115.1 960671 961777 R identified by match to protein family HMM PF00924; MscS family inner membrane protein YnaI complement(960671..961777) Nautilia profundicola AmH 7504663 YP_002607444.1 CDS aspS NC_012115.1 961883 963649 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 961883..963649 Nautilia profundicola AmH 7504073 YP_002607445.1 CDS NAMH_1046 NC_012115.1 963642 963911 D identified by match to protein family HMM PF04023; FeoA domain superfamily 963642..963911 Nautilia profundicola AmH 7504392 YP_002607446.1 CDS adk NC_012115.1 963975 964553 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 963975..964553 Nautilia profundicola AmH 7505493 YP_002607447.1 CDS NAMH_1048 NC_012115.1 964553 965272 D identified by match to protein family HMM PF00994; molybdopterin binding domain protein 964553..965272 Nautilia profundicola AmH 7505039 YP_002607448.1 CDS NAMH_1049 NC_012115.1 965284 966459 D identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254; ggdef domain protein 965284..966459 Nautilia profundicola AmH 7504201 YP_002607449.1 CDS NAMH_1050 NC_012115.1 966456 966926 D identified by glimmer; putative; hypothetical protein 966456..966926 Nautilia profundicola AmH 7504380 YP_002607450.1 CDS NAMH_1051 NC_012115.1 967153 968016 R identified by match to protein family HMM PF02754; CoB--CoM heterodisulfide reductase subunit B complement(967153..968016) Nautilia profundicola AmH 7504486 YP_002607451.1 CDS NAMH_1052 NC_012115.1 968018 968986 R identified by match to protein family HMM PF00111; match to protein family HMM TIGR00384; succinate dehydrogenase/fumarate reductase iron-sulfur protein complement(968018..968986) Nautilia profundicola AmH 7504493 YP_002607452.1 CDS NAMH_1053 NC_012115.1 968997 970703 R identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01812; succinate dehydrogenase flavoprotein subunit complement(968997..970703) Nautilia profundicola AmH 7505603 YP_002607453.1 CDS NAMH_1054 NC_012115.1 970705 972126 R identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01318; glutamate synthase [NADPH] small chain complement(970705..972126) Nautilia profundicola AmH 7504537 YP_002607454.1 CDS NAMH_1055 NC_012115.1 972129 972464 R identified by match to protein family HMM PF01155; hydrogenase expression/synthesis, HypA complement(972129..972464) Nautilia profundicola AmH 7504842 YP_002607455.1 CDS NAMH_1056 NC_012115.1 972457 972975 R identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein CooF complement(972457..972975) Nautilia profundicola AmH 7505595 YP_002607456.1 CDS NAMH_1057 NC_012115.1 973038 974117 R identified by match to protein family HMM PF00346; carbon monoxide-induced hydrogenase, large subunit complement(973038..974117) Nautilia profundicola AmH 7504587 YP_002607457.1 CDS NAMH_1058 NC_012115.1 974107 974622 R identified by match to protein family HMM PF00329; carbon monoxide-induced hydrogenase, CooU subunit complement(974107..974622) Nautilia profundicola AmH 7505521 YP_002607458.1 CDS NAMH_1059 NC_012115.1 974619 975122 R identified by match to protein family HMM PF00037; carbon monoxide-induced hydrogenase, iron-sulfur cluster-binding subunit complement(974619..975122) Nautilia profundicola AmH 7504160 YP_002607459.1 CDS NAMH_1060 NC_012115.1 975119 975547 R identified by match to protein family HMM PF01058; hydrogenase-4 component I complement(975119..975547) Nautilia profundicola AmH 7504102 YP_002607460.1 CDS NAMH_1061 NC_012115.1 975544 976503 R identified by match to protein family HMM PF00146; carbon monoxide-induced hydrogenase, CooK subunit complement(975544..976503) Nautilia profundicola AmH 7504547 YP_002607461.1 CDS NAMH_1062 NC_012115.1 976493 979978 R identified by match to protein family HMM PF00361; CooM complement(976493..979978) Nautilia profundicola AmH 7505417 YP_002607462.1 CDS NAMH_1064 NC_012115.1 980185 982134 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; mcp-signal transduction protein 980185..982134 Nautilia profundicola AmH 7504217 YP_002607463.1 CDS NAMH_1063 NC_012115.1 982131 982556 R hypothetical protein complement(982131..982556) Nautilia profundicola AmH 7504482 YP_002607464.1 CDS NAMH_1065 NC_012115.1 982560 982946 R identified by match to protein family HMM PF00583; acetyltransferase, gnat family complement(982560..982946) Nautilia profundicola AmH 7504846 YP_002607465.1 CDS proS NC_012115.1 982964 984688 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(982964..984688) Nautilia profundicola AmH 7504810 YP_002607466.1 CDS NAMH_1067 NC_012115.1 984688 984933 R identified by match to protein family HMM PF01479; S4 domain protein complement(984688..984933) Nautilia profundicola AmH 7505262 YP_002607467.1 CDS argG NC_012115.1 985046 986248 D catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 985046..986248 Nautilia profundicola AmH 7505359 YP_002607468.1 CDS NAMH_1069 NC_012115.1 986343 986756 R identified by glimmer; putative; hypothetical protein complement(986343..986756) Nautilia profundicola AmH 7504667 YP_002607469.1 CDS NAMH_1070 NC_012115.1 986812 987462 R identified by match to protein family HMM PF00156; phosphoribosyltransferase complement(986812..987462) Nautilia profundicola AmH 7503970 YP_002607470.1 CDS NAMH_1072 NC_012115.1 987560 988168 D identified by match to protein family HMM PF04116; putative Fa2h protein 987560..988168 Nautilia profundicola AmH 7504013 YP_002607471.1 CDS rgy NC_012115.1 988140 991358 R identified by match to protein family HMM PF00270; match to protein family HMM PF01131; match to protein family HMM PF01751; match to protein family HMM TIGR01054; reverse gyrase complement(988140..991358) Nautilia profundicola AmH 7504995 YP_002607472.1 CDS NAMH_1073 NC_012115.1 991430 992752 D identified by match to protein family HMM PF00654; chloride transporter, chloride channel (ClC) family 991430..992752 Nautilia profundicola AmH 7504669 YP_002607473.1 CDS hcp NC_012115.1 992820 994241 D catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 992820..994241 Nautilia profundicola AmH 7504172 YP_002607474.1 CDS NAMH_1076 NC_012115.1 994310 994699 D identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481; hypothetical protein 994310..994699 Nautilia profundicola AmH 7505362 YP_002607475.1 CDS NAMH_1075 NC_012115.1 994689 995324 R identified by match to protein family HMM PF00027; putative transcriptional regulator complement(994689..995324) Nautilia profundicola AmH 7504467 YP_002607476.1 CDS NAMH_1077 NC_012115.1 995424 997220 R identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148; 3-polyprenyl-4hydroxybenzoate decarboxylase complement(995424..997220) Nautilia profundicola AmH 7504344 YP_002607477.1 CDS NAMH_1078 NC_012115.1 997210 997674 R identified by glimmer; putative; hypothetical protein complement(997210..997674) Nautilia profundicola AmH 7505560 YP_002607478.1 CDS NAMH_1079 NC_012115.1 997667 998131 R identified by match to protein family HMM PF00300; phosphohistidine phosphatase complement(997667..998131) Nautilia profundicola AmH 7504883 YP_002607479.1 CDS NAMH_1080 NC_012115.1 998128 999264 R identified by match to protein family HMM PF03602; methyltransferase small complement(998128..999264) Nautilia profundicola AmH 7504457 YP_002607480.1 CDS NAMH_1081 NC_012115.1 999273 1001219 R identified by match to protein family HMM TIGR00376; putative DNA helicase complement(999273..1001219) Nautilia profundicola AmH 7504378 YP_002607481.1 CDS NAMH_1082 NC_012115.1 1001895 1002479 R an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by similarity to GB:AAD08401.1; hypothetical protein complement(1001895..1002479) Nautilia profundicola AmH 7505457 YP_002607482.1 CDS dnaB NC_012115.1 1002488 1003888 R unwinds double stranded DNA; replicative DNA helicase complement(1002488..1003888) Nautilia profundicola AmH 7505217 YP_002607483.1 CDS NAMH_1085 NC_012115.1 1003932 1004189 D identified by glimmer; putative; hypothetical protein 1003932..1004189 Nautilia profundicola AmH 7504437 YP_002607484.1 CDS NAMH_1084 NC_012115.1 1004149 1004469 R identified by glimmer; putative; hypothetical protein complement(1004149..1004469) Nautilia profundicola AmH 7504523 YP_002607485.1 CDS ispG NC_012115.1 1004466 1005518 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(1004466..1005518) Nautilia profundicola AmH 7504849 YP_002607486.1 CDS NAMH_1087 NC_012115.1 1005544 1006254 R identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478; hemolysin A complement(1005544..1006254) Nautilia profundicola AmH 7504415 YP_002607487.1 CDS gpsA NC_012115.1 1006464 1007348 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(1006464..1007348) Nautilia profundicola AmH 7505317 YP_002607488.1 CDS NAMH_1089 NC_012115.1 1007345 1008040 R identified by match to protein family HMM PF02254; putative TrkA-N complement(1007345..1008040) Nautilia profundicola AmH 7505249 YP_002607489.1 CDS NAMH_1090 NC_012115.1 1008037 1009632 R identified by match to protein family HMM PF00520; match to protein family HMM PF02254; match to protein family HMM PF07885; TrkA-N:Ion transport protein complement(1008037..1009632) Nautilia profundicola AmH 7503960 YP_002607490.1 CDS gatB NC_012115.1 1009629 1011053 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(1009629..1011053) Nautilia profundicola AmH 7504751 YP_002607491.1 CDS NAMH_1093 NC_012115.1 1012334 1012780 R identified by match to protein family HMM PF02629; CoA-binding complement(1012334..1012780) Nautilia profundicola AmH 7505344 YP_002607492.1 CDS NAMH_1094 NC_012115.1 1012886 1013161 D identified by match to protein family HMM PF00216; non-specific DNA-binding protein 1012886..1013161 Nautilia profundicola AmH 7504185 YP_002607493.1 CDS NAMH_1096 NC_012115.1 1013400 1015340 R identified by glimmer; putative; hypothetical protein complement(1013400..1015340) Nautilia profundicola AmH 7505183 YP_002607494.1 CDS msrA NC_012115.1 1015321 1015842 R identified by match to protein family HMM PF01625; match to protein family HMM TIGR00401; methionine-S-sulfoxide reductase complement(1015321..1015842) Nautilia profundicola AmH 7505570 YP_002607495.1 CDS dxs NC_012115.1 1015835 1017649 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(1015835..1017649) Nautilia profundicola AmH 7504973 YP_002607496.1 CDS fliH NC_012115.1 1017646 1018431 R binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H complement(1017646..1018431) Nautilia profundicola AmH 7505424 YP_002607497.1 CDS fliG NC_012115.1 1018424 1019449 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G complement(1018424..1019449) Nautilia profundicola AmH 7504656 YP_002607498.1 CDS fliF NC_012115.1 1019459 1021144 R the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein complement(1019459..1021144) Nautilia profundicola AmH 7504231 YP_002607499.1 CDS hisC NC_012115.1 1021141 1022214 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(1021141..1022214) Nautilia profundicola AmH 7504039 YP_002607500.1 CDS NAMH_1103 NC_012115.1 1022228 1023295 R identified by match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM TIGR01807; P-protein complement(1022228..1023295) Nautilia profundicola AmH 7505054 YP_002607501.1 CDS NAMH_1104 NC_012115.1 1023270 1024040 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460; HAD-superfamily hydrolase, subfamily IIA complement(1023270..1024040) Nautilia profundicola AmH 7505513 YP_002607502.1 CDS lysA NC_012115.1 1024061 1025263 R identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase complement(1024061..1025263) Nautilia profundicola AmH 7504758 YP_002607503.1 CDS NAMH_1106 NC_012115.1 1025288 1026310 R identified by match to protein family HMM PF03739; putative permease YjgP/YjgQ complement(1025288..1026310) Nautilia profundicola AmH 7505300 YP_002607504.1 CDS pth NC_012115.1 1026311 1026850 R identified by match to protein family HMM PF01195; match to protein family HMM TIGR00447; peptidyl-tRNA hydrolase complement(1026311..1026850) Nautilia profundicola AmH 7504009 YP_002607505.1 CDS NAMH_1108 NC_012115.1 1026902 1027438 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc complement(1026902..1027438) Nautilia profundicola AmH 7504366 YP_002607506.1 CDS NAMH_1109 NC_012115.1 1027492 1028613 R identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420; pilin biogenesis complement(1027492..1028613) Nautilia profundicola AmH 7504609 YP_002607507.1 CDS tal NC_012115.1 1028616 1029569 R identified by match to protein family HMM PF00923; match to protein family HMM TIGR00876; transaldolase complement(1028616..1029569) Nautilia profundicola AmH 7504961 YP_002607508.1 CDS serB NC_012115.1 1029640 1030260 R identified by match to protein family HMM PF00702; match to protein family HMM PF06888; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488; phosphoserine phosphatase SerB complement(1029640..1030260) Nautilia profundicola AmH 7504816 YP_002607509.1 CDS NAMH_1112 NC_012115.1 1030351 1030578 D identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411; component of Sec-independent protein secretion pathway TatA 1030351..1030578 Nautilia profundicola AmH 7504497 YP_002607510.1 CDS tatC NC_012115.1 1030571 1031299 D identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945; twin arginine-targeting protein translocase TatC 1030571..1031299 Nautilia profundicola AmH 7504400 YP_002607511.1 CDS NAMH_1115 NC_012115.1 1031464 1033308 D identified by match to protein family HMM PF04458; hypothetical protein 1031464..1033308 Nautilia profundicola AmH 7504533 YP_002607512.1 CDS NAMH_1114 NC_012115.1 1033305 1034144 R identified by match to protein family HMM PF00571; match to protein family HMM PF00990; match to protein family HMM TIGR00254; sensory box histidine kinase complement(1033305..1034144) Nautilia profundicola AmH 7505108 YP_002607513.1 CDS NAMH_1116 NC_012115.1 1034141 1035037 R identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein complement(1034141..1035037) Nautilia profundicola AmH 7503891 YP_002607514.1 CDS truD NC_012115.1 1035034 1036110 R identified by match to protein family HMM PF01142; match to protein family HMM TIGR00094; tRNA pseudouridine synthase D complement(1035034..1036110) Nautilia profundicola AmH 7503895 YP_002607515.1 CDS NAMH_1118 NC_012115.1 1036171 1036839 R identified by glimmer; putative; hypothetical protein complement(1036171..1036839) Nautilia profundicola AmH 7505023 YP_002607516.1 CDS NAMH_1119 NC_012115.1 1036849 1037661 R catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase complement(1036849..1037661) Nautilia profundicola AmH 7504588 YP_002607517.1 CDS NAMH_1120 NC_012115.1 1037727 1038233 R identified by match to protein family HMM PF08447; match to protein family HMM TIGR00229; aerotaxis sensor complement(1037727..1038233) Nautilia profundicola AmH 7504682 YP_002607518.1 CDS NAMH_1121 NC_012115.1 1038293 1039009 R identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM TIGR00384; fumarate reductase, iron-sulfur subunit complement(1038293..1039009) Nautilia profundicola AmH 7503926 YP_002607519.1 CDS NAMH_1122 NC_012115.1 1038999 1039574 R hypothetical protein complement(1038999..1039574) Nautilia profundicola AmH 7505577 YP_002607520.1 CDS NAMH_1123 NC_012115.1 1039687 1040517 R identified by match to protein family HMM PF02754; CoB--CoM heterodisulfide reductase subunit B complement(1039687..1040517) Nautilia profundicola AmH 7505093 YP_002607521.1 CDS NAMH_1124 NC_012115.1 1040517 1041476 R identified by match to protein family HMM PF00111; match to protein family HMM TIGR00384; succinate dehydrogenase/fumarate reductase iron-sulfur protein complement(1040517..1041476) Nautilia profundicola AmH 7504630 YP_002607522.1 CDS NAMH_1126 NC_012115.1 1041663 1043369 R identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM PF07992; match to protein family HMM TIGR01812; fumarate reductase flavoprotein subunit complement(1041663..1043369) Nautilia profundicola AmH 7505176 YP_002607523.1 CDS NAMH_1127 NC_012115.1 1043647 1044846 R hypothetical protein complement(1043647..1044846) Nautilia profundicola AmH 7503861 YP_002607524.1 CDS NAMH_1128 NC_012115.1 1044848 1046014 R catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase complement(1044848..1046014) Nautilia profundicola AmH 7505285 YP_002607525.1 CDS NAMH_1129 NC_012115.1 1046024 1046518 R identified by glimmer; putative; hypothetical protein complement(1046024..1046518) Nautilia profundicola AmH 7504332 YP_002607526.1 CDS NAMH_1131 NC_012115.1 1046645 1048144 D identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; sulfate permease family protein 1046645..1048144 Nautilia profundicola AmH 7504734 YP_002607527.1 CDS priA NC_012115.1 1048131 1049936 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(1048131..1049936) Nautilia profundicola AmH 7505435 YP_002607528.1 CDS NAMH_1132 NC_012115.1 1049933 1050355 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; putative N-terminal methylation complement(1049933..1050355) Nautilia profundicola AmH 7504972 YP_002607529.1 CDS NAMH_1133 NC_012115.1 1050402 1050908 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; N-terminal methylation complement(1050402..1050908) Nautilia profundicola AmH 7504043 YP_002607530.1 CDS NAMH_1134 NC_012115.1 1051095 1051301 R identified by glimmer; putative; hypothetical protein complement(1051095..1051301) Nautilia profundicola AmH 7505143 YP_002607531.1 CDS NAMH_1135 NC_012115.1 1051298 1051519 R identified by glimmer; putative; hypothetical protein complement(1051298..1051519) Nautilia profundicola AmH 7504383 YP_002607532.1 CDS uvrB NC_012115.1 1051587 1053617 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1051587..1053617 Nautilia profundicola AmH 7503997 YP_002607533.1 CDS NAMH_1137 NC_012115.1 1053627 1054067 D identified by glimmer; putative; hypothetical protein 1053627..1054067 Nautilia profundicola AmH 7503859 YP_002607534.1 CDS NAMH_1138 NC_012115.1 1054085 1054624 D transferase hexapeptide repeat protein 1054085..1054624 Nautilia profundicola AmH 7504786 YP_002607535.1 CDS NAMH_1139 NC_012115.1 1054628 1056793 D MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein 1054628..1056793 Nautilia profundicola AmH 7505558 YP_002607536.1 CDS NAMH_1140 NC_012115.1 1057072 1057596 R identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase complement(1057072..1057596) Nautilia profundicola AmH 7504966 YP_002607537.1 CDS NAMH_1141 NC_012115.1 1057874 1058314 D identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 2 1057874..1058314 Nautilia profundicola AmH 7503999 YP_002607538.1 CDS queA NC_012115.1 1058370 1059380 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase complement(1058370..1059380) Nautilia profundicola AmH 7504353 YP_002607539.1 CDS NAMH_1143 NC_012115.1 1059432 1060499 R identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching motility protein complement(1059432..1060499) Nautilia profundicola AmH 7504156 YP_002607540.1 CDS gatC NC_012115.1 1060510 1060791 R identified by match to protein family HMM PF02686; match to protein family HMM TIGR00135; glutamyl-tRNA(Gln) amidotransferase, C subunit complement(1060510..1060791) Nautilia profundicola AmH 7504727 YP_002607541.1 CDS hemL NC_012115.1 1060844 1062106 D identified by match to protein family HMM PF00202; match to protein family HMM TIGR00713; glutamate-1-semialdehyde-2,1-aminomutase 1060844..1062106 Nautilia profundicola AmH 7505142 YP_002607542.1 CDS NAMH_1146 NC_012115.1 1062106 1062420 D hypothetical protein 1062106..1062420 Nautilia profundicola AmH 7504502 YP_002607543.1 CDS NAMH_1147 NC_012115.1 1062422 1063666 R identified by match to protein family HMM PF00482; msha biogenesis protein mshg complement(1062422..1063666) Nautilia profundicola AmH 7505037 YP_002607544.1 CDS NAMH_1148 NC_012115.1 1063663 1065300 R identified by match to protein family HMM PF00437; match to protein family HMM PF05157; type II secretion system protein E complement(1063663..1065300) Nautilia profundicola AmH 7504622 YP_002607545.1 CDS NAMH_1149 NC_012115.1 1065297 1065842 R identified by glimmer; putative; hypothetical protein complement(1065297..1065842) Nautilia profundicola AmH 7505519 YP_002607546.1 CDS ilvC NC_012115.1 1065917 1066936 D identified by match to protein family HMM PF01450; match to protein family HMM PF02629; match to protein family HMM PF07991; match to protein family HMM TIGR00465; ketol-acid reductoisomerase 1065917..1066936 Nautilia profundicola AmH 7504551 YP_002607547.1 CDS minD NC_012115.1 1067004 1067813 D identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968; septum site-determining protein MinD 1067004..1067813 Nautilia profundicola AmH 7505206 YP_002607548.1 CDS minE NC_012115.1 1067810 1068043 D identified by match to protein family HMM PF03776; match to protein family HMM TIGR01215; cell division topological specificity factor MinE 1067810..1068043 Nautilia profundicola AmH 7505336 YP_002607549.1 CDS NAMH_1153 NC_012115.1 1068040 1069032 D identified by match to protein family HMM PF04748; putative periplasmic protein 1068040..1069032 Nautilia profundicola AmH 7504596 YP_002607550.1 CDS NAMH_1154 NC_012115.1 1069029 1069736 D identified by match to protein family HMM PF02481; DNA processing protein A 1069029..1069736 Nautilia profundicola AmH 7505141 YP_002607551.1 CDS NAMH_1155 NC_012115.1 1069753 1070271 D hypothetical protein 1069753..1070271 Nautilia profundicola AmH 7504066 YP_002607552.1 CDS NAMH_1157 NC_012115.1 1070244 1070636 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 1070244..1070636 Nautilia profundicola AmH 7504662 YP_002607553.1 CDS NAMH_1156 NC_012115.1 1070610 1072022 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(1070610..1072022) Nautilia profundicola AmH 7504772 YP_002607554.1 CDS panE NC_012115.1 1072015 1072842 R identified by match to protein family HMM PF02558; match to protein family HMM PF08546; match to protein family HMM TIGR00745; 2-dehydropantoate 2-reductase complement(1072015..1072842) Nautilia profundicola AmH 7503934 YP_002607555.1 CDS trmA NC_012115.1 1072988 1074085 R catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase complement(1072988..1074085) Nautilia profundicola AmH 7505464 YP_002607556.1 CDS fliP NC_012115.1 1074142 1074870 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(1074142..1074870) Nautilia profundicola AmH 7504105 YP_002607557.1 CDS NAMH_1161 NC_012115.1 1074878 1075654 R identified by match to protein family HMM PF00691; OmpA/MotB complement(1074878..1075654) Nautilia profundicola AmH 7504638 YP_002607558.1 CDS NAMH_1162 NC_012115.1 1075663 1076430 R identified by match to protein family HMM PF01618; motility protein A-flagellar motor component complement(1075663..1076430) Nautilia profundicola AmH 7505428 YP_002607559.1 CDS glmU NC_012115.1 1076478 1077761 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 1076478..1077761 Nautilia profundicola AmH 7504988 YP_002607560.1 CDS coaBC NC_012115.1 1077758 1078900 D identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 1077758..1078900 Nautilia profundicola AmH 7505016 YP_002607561.1 CDS NAMH_1165 NC_012115.1 1078881 1079576 D hypothetical protein 1078881..1079576 Nautilia profundicola AmH 7504560 YP_002607562.1 CDS uppS NC_012115.1 1079578 1080240 D identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055; UDP diphosphate synthase 1079578..1080240 Nautilia profundicola AmH 7505416 YP_002607563.1 CDS NAMH_1167 NC_012115.1 1080291 1081037 D identified by match to protein family HMM PF01478; match to protein family HMM PF06750; peptidase A24A, prepilin type IV 1080291..1081037 Nautilia profundicola AmH 7504799 YP_002607564.1 CDS NAMH_1168 NC_012115.1 1081030 1082001 D identified by match to protein family HMM PF03739; putative permease YjgP/YjgQ 1081030..1082001 Nautilia profundicola AmH 7503902 YP_002607565.1 CDS truA NC_012115.1 1082040 1082711 D identified by match to protein family HMM PF01416; match to protein family HMM TIGR00071; tRNA pseudouridine synthase A 1082040..1082711 Nautilia profundicola AmH 7504481 YP_002607566.1 CDS NAMH_1169 NC_012115.1 1082677 1083378 R putative alginate lyase AlyVOB complement(1082677..1083378) Nautilia profundicola AmH 7505005 YP_002607567.1 CDS NAMH_1171 NC_012115.1 1083505 1083843 R identified by glimmer; putative; hypothetical protein complement(1083505..1083843) Nautilia profundicola AmH 7504261 YP_002607568.1 CDS NAMH_1172 NC_012115.1 1083861 1084148 R identified by glimmer; putative; hypothetical protein complement(1083861..1084148) Nautilia profundicola AmH 7503912 YP_002607569.1 CDS NAMH_1173 NC_012115.1 1084225 1085130 D identified by match to protein family HMM PF00589; phage integrase 1084225..1085130 Nautilia profundicola AmH 7505578 YP_002607570.1 CDS NAMH_1174 NC_012115.1 1085232 1085555 D identified by glimmer; putative; hypothetical protein 1085232..1085555 Nautilia profundicola AmH 7504917 YP_002607571.1 CDS NAMH_1175 NC_012115.1 1085555 1085779 D identified by glimmer; putative; hypothetical protein 1085555..1085779 Nautilia profundicola AmH 7505391 YP_002607572.1 CDS NAMH_1176 NC_012115.1 1085841 1086026 D identified by glimmer; putative; hypothetical protein 1085841..1086026 Nautilia profundicola AmH 7504068 YP_002607573.1 CDS NAMH_1177 NC_012115.1 1086033 1086455 D identified by glimmer; putative; hypothetical protein 1086033..1086455 Nautilia profundicola AmH 7505589 YP_002607574.1 CDS NAMH_1178 NC_012115.1 1086733 1088247 D identified by glimmer; putative; hypothetical protein 1086733..1088247 Nautilia profundicola AmH 7504603 YP_002607575.1 CDS NAMH_1179 NC_012115.1 1088247 1088669 D identified by glimmer; putative; hypothetical protein 1088247..1088669 Nautilia profundicola AmH 7505382 YP_002607576.1 CDS NAMH_1180 NC_012115.1 1088671 1089840 D identified by match to protein family HMM PF05707; zonular occludens toxin (Zot) family 1088671..1089840 Nautilia profundicola AmH 7504150 YP_002607577.1 CDS NAMH_1181 NC_012115.1 1089800 1090990 D identified by glimmer; putative; hypothetical protein 1089800..1090990 Nautilia profundicola AmH 7505489 YP_002607578.1 CDS NAMH_1184 NC_012115.1 1091073 1092554 D identified by match to protein family HMM PF05840; bacteriophage replication gene A protein (GPA) 1091073..1092554 Nautilia profundicola AmH 7504409 YP_002607579.1 CDS NAMH_1185 NC_012115.1 1092581 1092847 D identified by match to protein family HMM PF07883; putative cupin domain protein 1092581..1092847 Nautilia profundicola AmH 7503909 YP_002607580.1 CDS NAMH_1186 NC_012115.1 1093182 1094150 R putative TPR repeat protein complement(1093182..1094150) Nautilia profundicola AmH 7504996 YP_002607581.1 CDS dnaG NC_012115.1 1094194 1095816 D identified by match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM PF08275; match to protein family HMM TIGR01391; DNA primase 1094194..1095816 Nautilia profundicola AmH 7504564 YP_002607582.1 CDS NAMH_1189 NC_012115.1 1095794 1096753 D identified by match to protein family HMM PF00764; match to protein family HMM PF02568; thiamine biosynthesis protein:ExsB 1095794..1096753 Nautilia profundicola AmH 7504852 YP_002607583.1 CDS NAMH_1188 NC_012115.1 1096745 1097530 R identified by glimmer; putative; hypothetical protein complement(1096745..1097530) Nautilia profundicola AmH 7505076 YP_002607584.1 CDS NAMH_1190 NC_012115.1 1097527 1099524 R hypothetical protein complement(1097527..1099524) Nautilia profundicola AmH 7503871 YP_002607585.1 CDS NAMH_1191 NC_012115.1 1099546 1101327 R identified by match to protein family HMM PF00905; match to protein family HMM PF03717; peptidoglycan glycosyltransferase complement(1099546..1101327) Nautilia profundicola AmH 7505050 YP_002607586.1 CDS NAMH_1192 NC_012115.1 1101306 1101632 R identified by glimmer; putative; hypothetical protein complement(1101306..1101632) Nautilia profundicola AmH 7504476 YP_002607587.1 CDS NAMH_1193 NC_012115.1 1101692 1102156 R catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate; acetyltransferase complement(1101692..1102156) Nautilia profundicola AmH 7504216 YP_002607588.1 CDS NAMH_1194 NC_012115.1 1102156 1102725 R identified by match to protein family HMM PF01926; match to protein family HMM TIGR00650; GTP-binding protein complement(1102156..1102725) Nautilia profundicola AmH 7505068 YP_002607589.1 CDS yhbN NC_012115.1 1102722 1103180 R identified by match to protein family HMM PF03968; match to protein family HMM TIGR03002; cell envelope biogenesis protein YhbN complement(1102722..1103180) Nautilia profundicola AmH 7505022 YP_002607590.1 CDS NAMH_1196 NC_012115.1 1103177 1103680 R identified by glimmer; putative; hypothetical protein complement(1103177..1103680) Nautilia profundicola AmH 7503884 YP_002607591.1 CDS NAMH_1197 NC_012115.1 1103674 1104165 R identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(1103674..1104165) Nautilia profundicola AmH 7505049 YP_002607592.1 CDS hisB NC_012115.1 1104166 1104735 R catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase complement(1104166..1104735) Nautilia profundicola AmH 7505559 YP_002607593.1 CDS NAMH_1199 NC_012115.1 1104737 1105417 R identified by match to protein family HMM PF03330; match to protein family HMM PF05036; match to protein family HMM TIGR00413; rare lipoprotein A complement(1104737..1105417) Nautilia profundicola AmH 7505386 YP_002607594.1 CDS NAMH_1200 NC_012115.1 1105414 1106754 R identified by match to protein family HMM PF01464; match to protein family HMM PF01476; regulatory protein dnir complement(1105414..1106754) Nautilia profundicola AmH 7504029 YP_002607595.1 CDS NAMH_1201 NC_012115.1 1106751 1107500 R identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; deoxyribonuclease, TatD family complement(1106751..1107500) Nautilia profundicola AmH 7504283 YP_002607596.1 CDS NAMH_1202 NC_012115.1 1107607 1108920 D identified by match to protein family HMM PF00390; match to protein family HMM PF01262; match to protein family HMM PF03949; NADP-dependent malic enzyme 1107607..1108920 Nautilia profundicola AmH 7505322 YP_002607597.1 CDS NAMH_1203 NC_012115.1 1109077 1109190 R identified by glimmer; putative; hypothetical protein complement(1109077..1109190) Nautilia profundicola AmH 7504362 YP_002607598.1 CDS NAMH_1204 NC_012115.1 1109240 1109755 D identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; molybdenum cofactor biosynthesis mog 1109240..1109755 Nautilia profundicola AmH 7504788 YP_002607599.1 CDS NAMH_1206 NC_012115.1 1109752 1110546 D identified by glimmer; putative; hypothetical protein 1109752..1110546 Nautilia profundicola AmH 7503851 YP_002607600.1 CDS NAMH_1205 NC_012115.1 1110538 1110870 R hypothetical protein complement(1110538..1110870) Nautilia profundicola AmH 7503957 YP_002607601.1 CDS rpiB NC_012115.1 1110860 1111288 R identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120; ribose 5-phosphate isomerase B complement(1110860..1111288) Nautilia profundicola AmH 7504947 YP_002607602.1 CDS pdxJ NC_012115.1 1111338 1112117 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1111338..1112117 Nautilia profundicola AmH 7504076 YP_002607603.1 CDS NAMH_1209 NC_012115.1 1112379 1114286 R identified by match to protein family HMM PF07693; KAP family P-loop domain protein complement(1112379..1114286) Nautilia profundicola AmH 7505129 YP_002607604.1 CDS NAMH_1210 NC_012115.1 1114346 1114972 R identified by match to protein family HMM PF00899; uba/thif-type NAD/fad binding fold protein complement(1114346..1114972) Nautilia profundicola AmH 7504967 YP_002607605.1 CDS NAMH_1211 NC_012115.1 1114965 1116125 R identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase complement(1114965..1116125) Nautilia profundicola AmH 7505042 YP_002607606.1 CDS NAMH_1212 NC_012115.1 1116122 1116673 R DNA polymerase III delta prime subunit HolB complement(1116122..1116673) Nautilia profundicola AmH 7503899 YP_002607607.1 CDS NAMH_1213 NC_012115.1 1116670 1117203 R hypothetical protein complement(1116670..1117203) Nautilia profundicola AmH 7503928 YP_002607608.1 CDS NAMH_1214 NC_012115.1 1117203 1118411 R identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00656; match to protein family HMM TIGR00657; asparate kinase, monofunctional class complement(1117203..1118411) Nautilia profundicola AmH 7504764 YP_002607609.1 CDS nudA NC_012115.1 1118437 1118895 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(1118437..1118895) Nautilia profundicola AmH 7504559 YP_002607610.1 CDS NAMH_1217 NC_012115.1 1118984 1120081 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1118984..1120081 Nautilia profundicola AmH 7504334 YP_002607611.1 CDS flgH NC_012115.1 1120129 1120842 R identified by match to protein family HMM PF02107; flagellar L-ring protein FlgH complement(1120129..1120842) Nautilia profundicola AmH 7504893 YP_002607612.1 CDS trpC NC_012115.1 1120874 1121650 R involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase complement(1120874..1121650) Nautilia profundicola AmH 7504582 YP_002607613.1 CDS NAMH_1220 NC_012115.1 1121647 1122888 R hypothetical protein complement(1121647..1122888) Nautilia profundicola AmH 7504705 YP_002607614.1 CDS NAMH_1221 NC_012115.1 1122905 1123288 R identified by match to protein family HMM PF03692; hypothetical protein complement(1122905..1123288) Nautilia profundicola AmH 7505237 YP_002607615.1 CDS NAMH_1222 NC_012115.1 1123303 1123986 R identified by match to protein family HMM PF05175; methyltransferase small complement(1123303..1123986) Nautilia profundicola AmH 7505609 YP_002607616.1 CDS kdsB NC_012115.1 1124060 1124779 D identified by match to protein family HMM PF02348; match to protein family HMM TIGR00466; 3-deoxy-D-manno-octulosonate cytidylyltransferase 1124060..1124779 Nautilia profundicola AmH 7505134 YP_002607617.1 CDS pdxA NC_012115.1 1124760 1125668 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 1124760..1125668 Nautilia profundicola AmH 7504953 YP_002607618.1 CDS NAMH_1225 NC_012115.1 1125722 1126552 D identified by match to protein family HMM PF02915; putative rubrerythrin subfamily 1125722..1126552 Nautilia profundicola AmH 7503843 YP_002607619.1 CDS oorC NC_012115.1 1126749 1127306 R identified by match to protein family HMM PF01558; 2-oxoglutarate-acceptor oxidoreductase subunit OorC complement(1126749..1127306) Nautilia profundicola AmH 7504932 YP_002607620.1 CDS oorB NC_012115.1 1127306 1128136 R identified by match to protein family HMM PF02775; 2-oxoglutarate-acceptor oxidoreductase subunit OorB complement(1127306..1128136) Nautilia profundicola AmH 7504545 YP_002607621.1 CDS oorA NC_012115.1 1128147 1129280 R identified by match to protein family HMM PF01855; 2-oxoglutarate-acceptor oxidoreductase subunit OorA complement(1128147..1129280) Nautilia profundicola AmH 7505557 YP_002607622.1 CDS oorD NC_012115.1 1129280 1129579 R identified by match to protein family HMM PF00037; 2-oxoglutarate-acceptor oxidoreductase subunit OorD complement(1129280..1129579) Nautilia profundicola AmH 7504234 YP_002607623.1 CDS NAMH_1230 NC_012115.1 1129781 1130659 R identified by match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019; succinyl-CoA synthetase alpha chain complement(1129781..1130659) Nautilia profundicola AmH 7504851 YP_002607624.1 CDS sucC NC_012115.1 1130659 1131831 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(1130659..1131831) Nautilia profundicola AmH 7505053 YP_002607625.1 CDS NAMH_1232 NC_012115.1 1131894 1132448 R an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723; C-terminal fumarate hydratase, class I complement(1131894..1132448) Nautilia profundicola AmH 7505505 YP_002607626.1 CDS NAMH_1233 NC_012115.1 1132458 1133318 R identified by match to protein family HMM PF05681; match to protein family HMM TIGR00722; fumarate hydratase, alpha subunit complement(1132458..1133318) Nautilia profundicola AmH 7504908 YP_002607627.1 CDS mdh NC_012115.1 1133315 1134265 R Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase complement(1133315..1134265) Nautilia profundicola AmH 7505588 YP_002607628.1 CDS NAMH_1235 NC_012115.1 1134302 1136521 R identified by match to protein family HMM PF03971; match to protein family HMM TIGR00178; isocitrate dehydrogenase, NADP-dependent complement(1134302..1136521) Nautilia profundicola AmH 7505601 YP_002607629.1 CDS NAMH_1236 NC_012115.1 1136635 1137555 R identified by match to protein family HMM PF02618; hypothetical protein complement(1136635..1137555) Nautilia profundicola AmH 7505034 YP_002607630.1 CDS NAMH_1238 NC_012115.1 1137956 1140373 D hypothetical protein 1137956..1140373 Nautilia profundicola AmH 7503923 YP_002607631.1 CDS NAMH_1237 NC_012115.1 1140370 1140735 R identified by match to protein family HMM PF00376; transcriptional regulator, MerR family complement(1140370..1140735) Nautilia profundicola AmH 7504774 YP_002607632.1 CDS NAMH_1239 NC_012115.1 1140756 1141613 R identified by match to protein family HMM PF00226; match to protein family HMM PF01556; co-chaperone protein DnaJ complement(1140756..1141613) Nautilia profundicola AmH 7504129 YP_002607633.1 CDS NAMH_1240 NC_012115.1 1141811 1143172 R identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase/phosphoglucomutase complement(1141811..1143172) Nautilia profundicola AmH 7505339 YP_002607634.1 CDS NAMH_1241 NC_012115.1 1143268 1143843 R identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052; hypothetical protein complement(1143268..1143843) Nautilia profundicola AmH 7505531 YP_002607635.1 CDS NAMH_1242 NC_012115.1 1143840 1144715 R hypothetical protein complement(1143840..1144715) Nautilia profundicola AmH 7504922 YP_002607636.1 CDS metG NC_012115.1 1144776 1146683 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(1144776..1146683) Nautilia profundicola AmH 7504946 YP_002607637.1 CDS fbp NC_012115.1 1146680 1147531 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(1146680..1147531) Nautilia profundicola AmH 7504485 YP_002607638.1 CDS mobB NC_012115.1 1147541 1148026 R identified by match to protein family HMM PF03205; match to protein family HMM TIGR00176; molybdopterin-guanine dinucleotide biosynthesis protein B complement(1147541..1148026) Nautilia profundicola AmH 7504725 YP_002607639.1 CDS NAMH_1246 NC_012115.1 1148088 1149341 D hypothetical protein 1148088..1149341 Nautilia profundicola AmH 7504610 YP_002607640.1 CDS leuD NC_012115.1 1149404 1149904 D identified by match to protein family HMM PF00694; match to protein family HMM TIGR02084; match to protein family HMM TIGR02087; 3-isopropylmalate dehydratase, small subunit 1149404..1149904 Nautilia profundicola AmH 7504395 YP_002607641.1 CDS leuB NC_012115.1 1149901 1150965 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 1149901..1150965 Nautilia profundicola AmH 7504033 YP_002607642.1 CDS NAMH_1249 NC_012115.1 1150952 1151194 D hypothetical protein 1150952..1151194 Nautilia profundicola AmH 7505488 YP_002607643.1 CDS NAMH_1250 NC_012115.1 1151203 1151451 D hypothetical protein 1151203..1151451 Nautilia profundicola AmH 7504410 YP_002607644.1 CDS NAMH_1251 NC_012115.1 1151429 1152523 D identified by match to protein family HMM PF01743; CCA-adding enzyme 1151429..1152523 Nautilia profundicola AmH 7505594 YP_002607645.1 CDS purU NC_012115.1 1152525 1153352 D identified by match to protein family HMM PF00551; match to protein family HMM PF01842; match to protein family HMM TIGR00655; formyltetrahydrofolate deformylase 1152525..1153352 Nautilia profundicola AmH 7505031 YP_002607646.1 CDS NAMH_1253 NC_012115.1 1153363 1153500 D flagellar basal-body M-ring protein flif 1153363..1153500 Nautilia profundicola AmH 7505087 YP_002607647.1 CDS NAMH_1254 NC_012115.1 1153493 1153951 D identified by match to protein family HMM PF00588; RNA methyltransferase, TrmH family, group 2 1153493..1153951 Nautilia profundicola AmH 7504475 YP_002607648.1 CDS NAMH_1255 NC_012115.1 1153948 1154433 D identified by glimmer; putative; hypothetical protein 1153948..1154433 Nautilia profundicola AmH 7504635 YP_002607649.1 CDS NAMH_1257 NC_012115.1 1154434 1154787 D hypothetical protein 1154434..1154787 Nautilia profundicola AmH 7505116 YP_002607650.1 CDS NAMH_1256 NC_012115.1 1154774 1155691 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(1154774..1155691) Nautilia profundicola AmH 7504694 YP_002607651.1 CDS NAMH_1258 NC_012115.1 1155739 1156947 D identified by match to protein family HMM PF03349; membrane protein 1155739..1156947 Nautilia profundicola AmH 7504388 YP_002607652.1 CDS NAMH_1259 NC_012115.1 1157018 1158976 R identified by match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; ribonuclease R complement(1157018..1158976) Nautilia profundicola AmH 7505461 YP_002607653.1 CDS NAMH_1260 NC_012115.1 1158979 1159770 R identified by match to protein family HMM PF08668; hypothetical protein complement(1158979..1159770) Nautilia profundicola AmH 7504756 YP_002607654.1 CDS NAMH_1261 NC_012115.1 1159763 1160569 R hypothetical protein complement(1159763..1160569) Nautilia profundicola AmH 7504839 YP_002607655.1 CDS NAMH_1262 NC_012115.1 1160562 1161299 R identified by glimmer; putative; hypothetical protein complement(1160562..1161299) Nautilia profundicola AmH 7504387 YP_002607656.1 CDS NAMH_1263 NC_012115.1 1161283 1162620 R identified by match to protein family HMM PF00263; general secretory pathway protein D complement(1161283..1162620) Nautilia profundicola AmH 7505033 YP_002607657.1 CDS NAMH_1264 NC_012115.1 1162617 1163057 R identified by glimmer; putative; hypothetical protein complement(1162617..1163057) Nautilia profundicola AmH 7503911 YP_002607658.1 CDS NAMH_1265 NC_012115.1 1163054 1163665 R identified by glimmer; putative; hypothetical protein complement(1163054..1163665) Nautilia profundicola AmH 7505048 YP_002607659.1 CDS NAMH_1266 NC_012115.1 1163662 1165230 R identified by glimmer; putative; hypothetical protein complement(1163662..1165230) Nautilia profundicola AmH 7505455 YP_002607660.1 CDS era NC_012115.1 1165227 1166108 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(1165227..1166108) Nautilia profundicola AmH 7504359 YP_002607661.1 CDS hslU NC_012115.1 1166120 1167433 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(1166120..1167433) Nautilia profundicola AmH 7504574 YP_002607662.1 CDS NAMH_1269 NC_012115.1 1167435 1167983 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(1167435..1167983) Nautilia profundicola AmH 7504904 YP_002607663.1 CDS rplI NC_012115.1 1167983 1168423 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(1167983..1168423) Nautilia profundicola AmH 7504580 YP_002607664.1 CDS NAMH_1271 NC_012115.1 1168510 1168935 D identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein/sensory box protein 1168510..1168935 Nautilia profundicola AmH 7505444 YP_002607665.1 CDS NAMH_1272 NC_012115.1 1168935 1170143 D identified by glimmer; putative; hypothetical protein 1168935..1170143 Nautilia profundicola AmH 7504888 YP_002607666.1 CDS NAMH_1273 NC_012115.1 1170143 1170523 D identified by glimmer; putative; hypothetical protein 1170143..1170523 Nautilia profundicola AmH 7504116 YP_002607667.1 CDS NAMH_1274 NC_012115.1 1170520 1173612 D identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase/response regulator 1170520..1173612 Nautilia profundicola AmH 7505480 YP_002607668.1 CDS NAMH_1276 NC_012115.1 1173618 1173986 D identified by match to protein family HMM PF00072; response regulator DrrA 1173618..1173986 Nautilia profundicola AmH 7505374 YP_002607669.1 CDS NAMH_1275 NC_012115.1 1173973 1175037 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423; hypothetical protein complement(1173973..1175037) Nautilia profundicola AmH 7505100 YP_002607670.1 CDS NAMH_1277 NC_012115.1 1175105 1177552 D identified by match to protein family HMM PF01909; match to protein family HMM PF01966; match to protein family HMM PF08335; metal dependent phosphohydrolase 1175105..1177552 Nautilia profundicola AmH 7504067 YP_002607671.1 CDS NAMH_1279 NC_012115.1 1177549 1179198 D identified by match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254; ggdef domain protein 1177549..1179198 Nautilia profundicola AmH 7504370 YP_002607672.1 CDS NAMH_1278 NC_012115.1 1179195 1179962 R identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; DNA polymerase III PolC-type complement(1179195..1179962) Nautilia profundicola AmH 7504721 YP_002607673.1 CDS NAMH_1280 NC_012115.1 1180186 1181718 D hypothetical protein 1180186..1181718 Nautilia profundicola AmH 7503877 YP_002607674.1 CDS NAMH_1281 NC_012115.1 1182072 1182311 R cytoChrome c-553 complement(1182072..1182311) Nautilia profundicola AmH 7504659 YP_002607675.1 CDS NAMH_1282 NC_012115.1 1182438 1183130 R identified by match to protein family HMM PF02683; C-type cytochrome biogenesis protein complement(1182438..1183130) Nautilia profundicola AmH 7505215 YP_002607676.1 CDS NAMH_1283 NC_012115.1 1183133 1183525 R hypothetical protein complement(1183133..1183525) Nautilia profundicola AmH 7504089 YP_002607677.1 CDS hemG NC_012115.1 1183525 1184754 R identified by match to protein family HMM PF01593; match to protein family HMM TIGR00562; protoporphyrinogen oxidase complement(1183525..1184754) Nautilia profundicola AmH 7505051 YP_002607678.1 CDS lgt NC_012115.1 1184751 1185554 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(1184751..1185554) Nautilia profundicola AmH 7503870 YP_002607679.1 CDS NAMH_1286 NC_012115.1 1185792 1187066 D identified by match to protein family HMM PF00037; match to protein family HMM PF02754; ferredoxin-type oxidoreductase 1185792..1187066 Nautilia profundicola AmH 7504113 YP_002607680.1 CDS selD NC_012115.1 1187216 1188259 R Selenoprotein. identified by match to protein family HMM PF02769; match to protein family HMM TIGR00476; selenide, water dikinase complement(1187216..1188259) Nautilia profundicola AmH 7505473 YP_002607681.1 CDS NAMH_1288 NC_012115.1 1188290 1188646 R identified by match to protein family HMM PF02635; hypothetical protein complement(1188290..1188646) Nautilia profundicola AmH 7504047 YP_002607682.1 CDS NAMH_1289 NC_012115.1 1188759 1189040 R identified by match to protein family HMM PF00403; periplasmic mercuric ion binding protein complement(1188759..1189040) Nautilia profundicola AmH 7504856 YP_002607683.1 CDS NAMH_1290 NC_012115.1 1189042 1189638 R identified by match to protein family HMM PF01206; hypothetical protein complement(1189042..1189638) Nautilia profundicola AmH 7504540 YP_002607684.1 CDS NAMH_1291 NC_012115.1 1189638 1190750 R identified by match to protein family HMM PF01841; match to protein family HMM TIGR01409; transglutaminase family protein complement(1189638..1190750) Nautilia profundicola AmH 7505564 YP_002607685.1 CDS NAMH_1292 NC_012115.1 1190759 1191355 R identified by match to protein family HMM PF01206; match to protein family HMM TIGR03527; hypothetical protein complement(1190759..1191355) Nautilia profundicola AmH 7505372 YP_002607686.1 CDS fdhD NC_012115.1 1191692 1192489 D involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 1191692..1192489 Nautilia profundicola AmH 7504421 YP_002607687.1 CDS NAMH_1294 NC_012115.1 1192499 1193224 D identified by match to protein family HMM PF00126; ModE repressor domain protein 1192499..1193224 Nautilia profundicola AmH 7504093 YP_002607688.1 CDS NAMH_1295 NC_012115.1 1193221 1194453 D identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; moea protein 1193221..1194453 Nautilia profundicola AmH 7505448 YP_002607689.1 CDS NAMH_1296 NC_012115.1 1194503 1195891 D identified by match to protein family HMM PF00497; match to protein family HMM PF00990; match to protein family HMM TIGR00254; putative diguanylate cyclase 1194503..1195891 Nautilia profundicola AmH 7504980 YP_002607690.1 CDS NAMH_1298 NC_012115.1 1195955 1197346 D identified by match to protein family HMM PF00497; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1195955..1197346 Nautilia profundicola AmH 7504864 YP_002607691.1 CDS NAMH_1297 NC_012115.1 1197324 1197875 R an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; response regulator receiver domain protein complement(1197324..1197875) Nautilia profundicola AmH 7505440 YP_002607692.1 CDS NAMH_1299 NC_012115.1 1197862 1198005 R an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; response regulator receiver domain protein complement(1197862..1198005) Nautilia profundicola AmH 7504785 YP_002607693.1 CDS NAMH_1300 NC_012115.1 1197992 1199482 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; histidine kinase complement(1197992..1199482) Nautilia profundicola AmH 7505482 YP_002607694.1 CDS NAMH_1301 NC_012115.1 1199479 1200576 R extracellular ligand-binding receptor complement(1199479..1200576) Nautilia profundicola AmH 7504394 YP_002607695.1 CDS NAMH_1302 NC_012115.1 1200711 1202366 D identified by match to protein family HMM PF00037; 4Fe-4S ferredoxin, iron-sulfur binding 1200711..1202366 Nautilia profundicola AmH 7505590 YP_002607696.1 CDS NAMH_1303 NC_012115.1 1202356 1203093 D hypothetical protein 1202356..1203093 Nautilia profundicola AmH 7504196 YP_002607697.1 CDS NAMH_1304 NC_012115.1 1203119 1203286 D identified by glimmer; putative; hypothetical protein 1203119..1203286 Nautilia profundicola AmH 7504078 YP_002607698.1 CDS NAMH_1305 NC_012115.1 1203579 1203770 D hypothetical protein 1203579..1203770 Nautilia profundicola AmH 7505153 YP_002607699.1 CDS NAMH_1306 NC_012115.1 1203781 1204332 D an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF04879; match to protein family HMM TIGR01409; formate dehydrogenase 1203781..1204332 Nautilia profundicola AmH 7504749 YP_002607700.1 CDS NAMH_1307 NC_012115.1 1204381 1206606 D an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00384; match to protein family HMM PF01568; formate dehydrogenase subunit A 1204381..1206606 Nautilia profundicola AmH 7503878 YP_002607701.1 CDS NAMH_1308 NC_012115.1 1206617 1207213 D identified by match to protein family HMM PF00037; formate dehydrogenase subunit B 1206617..1207213 Nautilia profundicola AmH 7503976 YP_002607702.1 CDS NAMH_1309 NC_012115.1 1207223 1208149 D identified by match to protein family HMM TIGR01583; formate dehydrogenase subunit C 1207223..1208149 Nautilia profundicola AmH 7504748 YP_002607703.1 CDS NAMH_1310 NC_012115.1 1208243 1209175 D identified by match to protein family HMM PF01547; putative extracellular solute-binding protein 1208243..1209175 Nautilia profundicola AmH 7504138 YP_002607704.1 CDS NAMH_1311 NC_012115.1 1209165 1210148 D identified by match to protein family HMM PF00005; sulfate/thiosulfate import ATP-binding protein CysA 1209165..1210148 Nautilia profundicola AmH 7504673 YP_002607705.1 CDS NAMH_1313 NC_012115.1 1210193 1210951 D identified by match to protein family HMM PF00528; sulfate/molybdate ABC transporter, permease protein 1210193..1210951 Nautilia profundicola AmH 7503869 YP_002607706.1 CDS ybbB NC_012115.1 1210913 1211914 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase complement(1210913..1211914) Nautilia profundicola AmH 7505252 YP_002607707.1 CDS NAMH_1314 NC_012115.1 1211895 1213961 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; molybdopterin oxidoreductase complement(1211895..1213961) Nautilia profundicola AmH 7504440 YP_002607708.1 CDS NAMH_1315 NC_012115.1 1213982 1214683 R identified by match to protein family HMM PF00106; short-chain dehydrogenase/reductase SDR complement(1213982..1214683) Nautilia profundicola AmH 7505326 YP_002607709.1 CDS NAMH_1317 NC_012115.1 1214786 1215508 D identified by match to protein family HMM PF02698; hypothetical protein 1214786..1215508 Nautilia profundicola AmH 7503939 YP_002607710.1 CDS NAMH_1316 NC_012115.1 1215497 1217455 R identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; sensory box/ggdef family protein complement(1215497..1217455) Nautilia profundicola AmH 7503825 YP_002607711.1 CDS NAMH_1318 NC_012115.1 1217452 1218315 R putative lipoprotein complement(1217452..1218315) Nautilia profundicola AmH 7504930 YP_002607712.1 CDS NAMH_1319 NC_012115.1 1218356 1219231 R identified by match to protein family HMM PF03547; auxin Efflux Carrier complement(1218356..1219231) Nautilia profundicola AmH 7504075 YP_002607713.1 CDS NAMH_1320 NC_012115.1 1219233 1219532 R identified by glimmer; putative; hypothetical protein complement(1219233..1219532) Nautilia profundicola AmH 7505003 YP_002607714.1 CDS thrC NC_012115.1 1219604 1221124 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(1219604..1221124) Nautilia profundicola AmH 7504008 YP_002607715.1 CDS NAMH_1322 NC_012115.1 1221362 1222228 D hypothetical protein 1221362..1222228 Nautilia profundicola AmH 7504315 YP_002607716.1 CDS NAMH_1323 NC_012115.1 1222382 1222675 R identified by glimmer; putative; hypothetical protein complement(1222382..1222675) Nautilia profundicola AmH 7504645 YP_002607717.1 CDS selA NC_012115.1 1222739 1224085 D catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 1222739..1224085 Nautilia profundicola AmH 7505581 YP_002607718.1 CDS selB NC_012115.1 1224078 1225907 D identified by match to protein family HMM PF00009; match to protein family HMM PF01926; match to protein family HMM PF03144; match to protein family HMM PF09107; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475; selenocysteine-specific translation elongation factor 1224078..1225907 Nautilia profundicola AmH 7504418 YP_002607719.1 CDS rpmE NC_012115.1 1226191 1226391 D identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105; ribosomal protein L31 1226191..1226391 Nautilia profundicola AmH 7505208 YP_002607720.1 CDS NAMH_1327 NC_012115.1 1226392 1227180 D identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; hypothetical protein 1226392..1227180 Nautilia profundicola AmH 7505334 YP_002607721.1 CDS NAMH_1328 NC_012115.1 1227281 1227394 D identified by glimmer; putative; hypothetical protein 1227281..1227394 Nautilia profundicola AmH 7504265 YP_002607722.1 CDS trpB NC_012115.1 1227357 1228568 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1227357..1228568 Nautilia profundicola AmH 7504189 YP_002607723.1 CDS NAMH_1330 NC_012115.1 1228578 1228886 D identified by glimmer; putative; hypothetical protein 1228578..1228886 Nautilia profundicola AmH 7504538 YP_002607724.1 CDS lepA NC_012115.1 1229533 1231317 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(1229533..1231317) Nautilia profundicola AmH 7504689 YP_002607725.1 CDS NAMH_1332 NC_012115.1 1231347 1231913 R identified by glimmer; putative; hypothetical protein complement(1231347..1231913) Nautilia profundicola AmH 7504022 YP_002607726.1 CDS dnaE NC_012115.1 1231975 1235373 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 1231975..1235373 Nautilia profundicola AmH 7504621 YP_002607727.1 CDS NAMH_1333 NC_012115.1 1235370 1236308 R putative Galanin complement(1235370..1236308) Nautilia profundicola AmH 7503831 YP_002607728.1 CDS NAMH_1335 NC_012115.1 1236305 1236865 R identified by match to protein family HMM PF04011; LemA protein complement(1236305..1236865) Nautilia profundicola AmH 7505123 YP_002607729.1 CDS NAMH_1336 NC_012115.1 1236866 1238524 R identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; diguanylate cyclase/phosphodiesterase complement(1236866..1238524) Nautilia profundicola AmH 7504987 YP_002607730.1 CDS NAMH_1337 NC_012115.1 1238566 1238997 R identified by glimmer; putative; hypothetical protein complement(1238566..1238997) Nautilia profundicola AmH 7505421 YP_002607731.1 CDS NAMH_1338 NC_012115.1 1239096 1239350 D identified by match to protein family HMM PF00076; RNA-binding protein 1239096..1239350 Nautilia profundicola AmH 7504776 YP_002607732.1 CDS NAMH_1339 NC_012115.1 1239458 1239571 R identified by glimmer; putative; hypothetical protein complement(1239458..1239571) Nautilia profundicola AmH 7504034 YP_002607733.1 CDS NAMH_1340 NC_012115.1 1239758 1240102 D hypothetical protein 1239758..1240102 Nautilia profundicola AmH 7504729 YP_002607734.1 CDS NAMH_1341 NC_012115.1 1240197 1240541 R identified by glimmer; putative; hypothetical protein complement(1240197..1240541) Nautilia profundicola AmH 7504296 YP_002607735.1 CDS thrS NC_012115.1 1240845 1242680 D catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 1240845..1242680 Nautilia profundicola AmH 7503864 YP_002607736.1 CDS infC NC_012115.1 1242677 1243213 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1242677..1243213 Nautilia profundicola AmH 7505310 YP_002607737.1 CDS NAMH_1344 NC_012115.1 1243300 1244535 D identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; inner membrane protein YcdT 1243300..1244535 Nautilia profundicola AmH 7504316 YP_002607738.1 CDS NAMH_1345 NC_012115.1 1244537 1245349 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliY complement(1244537..1245349) Nautilia profundicola AmH 7504426 YP_002607739.1 CDS fliM NC_012115.1 1245342 1246412 R with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM complement(1245342..1246412) Nautilia profundicola AmH 7504806 YP_002607740.1 CDS fliA NC_012115.1 1246405 1247094 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor complement(1246405..1247094) Nautilia profundicola AmH 7505419 YP_002607741.1 CDS NAMH_1348 NC_012115.1 1247091 1247426 R hypothetical protein complement(1247091..1247426) Nautilia profundicola AmH 7504425 YP_002607742.1 CDS NAMH_1349 NC_012115.1 1247436 1248302 R identified by match to protein family HMM PF01656; ATP-binding protein-chromosome partitioning ATPase protein complement(1247436..1248302) Nautilia profundicola AmH 7504828 YP_002607743.1 CDS flhF NC_012115.1 1248299 1249549 R positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF complement(1248299..1249549) Nautilia profundicola AmH 7504503 YP_002607744.1 CDS folK NC_012115.1 1249551 1250036 R identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(1249551..1250036) Nautilia profundicola AmH 7505126 YP_002607745.1 CDS NAMH_1352 NC_012115.1 1250036 1250200 R hypothetical protein complement(1250036..1250200) Nautilia profundicola AmH 7505292 YP_002607746.1 CDS NAMH_1353 NC_012115.1 1250197 1251213 R identified by match to protein family HMM PF00557; proline aminopeptidase complement(1250197..1251213) Nautilia profundicola AmH 7505115 YP_002607747.1 CDS aroQ NC_012115.1 1251262 1251753 R identified by match to protein family HMM PF01220; match to protein family HMM TIGR01088; 3-dehydroquinate dehydratase, type II complement(1251262..1251753) Nautilia profundicola AmH 7504963 YP_002607748.1 CDS NAMH_1355 NC_012115.1 1251828 1253042 D Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; chlorohydrolase 1251828..1253042 Nautilia profundicola AmH 7504874 YP_002607749.1 CDS NAMH_1356 NC_012115.1 1253047 1253676 R identified by match to protein family HMM PF00691; major outer membrane protein complement(1253047..1253676) Nautilia profundicola AmH 7504080 YP_002607750.1 CDS NAMH_1357 NC_012115.1 1253687 1255816 R identified by match to protein family HMM PF01580; DNA translocase FtsK complement(1253687..1255816) Nautilia profundicola AmH 7504299 YP_002607751.1 CDS NAMH_1359 NC_012115.1 1255828 1255965 D identified by glimmer; putative; hypothetical protein 1255828..1255965 Nautilia profundicola AmH 7505498 YP_002607752.1 CDS flgL NC_012115.1 1255956 1258601 R with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL complement(1255956..1258601) Nautilia profundicola AmH 7504402 YP_002607753.1 CDS xseA NC_012115.1 1258821 1260158 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1258821..1260158) Nautilia profundicola AmH 7505494 YP_002607754.1 CDS alr NC_012115.1 1260155 1261129 R converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase complement(1260155..1261129) Nautilia profundicola AmH 7504937 YP_002607755.1 CDS rpsR NC_012115.1 1261230 1261514 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(1261230..1261514) Nautilia profundicola AmH 7504278 YP_002607756.1 CDS ssb NC_012115.1 1261525 1261998 R identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein complement(1261525..1261998) Nautilia profundicola AmH 7505009 YP_002607757.1 CDS rpsF NC_012115.1 1261991 1262326 R identified by match to protein family HMM PF01250; match to protein family HMM TIGR00166; ribosomal protein S6 complement(1261991..1262326) Nautilia profundicola AmH 7504146 YP_002607758.1 CDS NAMH_1365 NC_012115.1 1262559 1264115 R activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(1262559..1264115) Nautilia profundicola AmH 7505150 YP_002607759.1 CDS NAMH_1366 NC_012115.1 1264164 1265111 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; histidine kinase 1264164..1265111 Nautilia profundicola AmH 7505487 YP_002607760.1 CDS NAMH_1367 NC_012115.1 1265180 1265665 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; putative pilin complement(1265180..1265665) Nautilia profundicola AmH 7504155 YP_002607761.1 CDS NAMH_1368 NC_012115.1 1265670 1266089 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; N-terminal methylation complement(1265670..1266089) Nautilia profundicola AmH 7503883 YP_002607762.1 CDS NAMH_1369 NC_012115.1 1266249 1267466 R identified by match to protein family HMM PF00482; msha biogenesis protein mshg complement(1266249..1267466) Nautilia profundicola AmH 7504108 YP_002607763.1 CDS NAMH_1370 NC_012115.1 1267456 1269129 R identified by match to protein family HMM PF00437; match to protein family HMM PF05157; type II secretion system protein E complement(1267456..1269129) Nautilia profundicola AmH 7504550 YP_002607764.1 CDS NAMH_1371 NC_012115.1 1269126 1269647 R identified by glimmer; putative; hypothetical protein complement(1269126..1269647) Nautilia profundicola AmH 7505526 YP_002607765.1 CDS NAMH_1372 NC_012115.1 1269634 1270293 R transformation system protein complement(1269634..1270293) Nautilia profundicola AmH 7504442 YP_002607766.1 CDS NAMH_1373 NC_012115.1 1270290 1270973 R identified by glimmer; putative; hypothetical protein complement(1270290..1270973) Nautilia profundicola AmH 7505412 YP_002607767.1 CDS NAMH_1374 NC_012115.1 1270963 1272312 R identified by match to protein family HMM PF00263; type II and III secretion system protein complement(1270963..1272312) Nautilia profundicola AmH 7504369 YP_002607768.1 CDS NAMH_1375 NC_012115.1 1272309 1272677 R identified by glimmer; putative; hypothetical protein complement(1272309..1272677) Nautilia profundicola AmH 7504494 YP_002607769.1 CDS NAMH_1376 NC_012115.1 1272674 1273261 R identified by glimmer; putative; hypothetical protein complement(1272674..1273261) Nautilia profundicola AmH 7504837 YP_002607770.1 CDS NAMH_1377 NC_012115.1 1273254 1274684 R hypothetical protein complement(1273254..1274684) Nautilia profundicola AmH 7505471 YP_002607771.1 CDS NAMH_1378 NC_012115.1 1274689 1275138 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; prokaryotic N-terminal methylation motif domain protein complement(1274689..1275138) Nautilia profundicola AmH 7505431 YP_002607772.1 CDS NAMH_1379 NC_012115.1 1275139 1275582 R identified by glimmer; putative; hypothetical protein complement(1275139..1275582) Nautilia profundicola AmH 7504024 YP_002607773.1 CDS NAMH_1380 NC_012115.1 1275579 1276601 R identified by glimmer; putative; hypothetical protein complement(1275579..1276601) Nautilia profundicola AmH 7504854 YP_002607774.1 CDS NAMH_1381 NC_012115.1 1276613 1277239 R identified by glimmer; putative; hypothetical protein complement(1276613..1277239) Nautilia profundicola AmH 7504438 YP_002607775.1 CDS prfB NC_012115.1 1277236 1278339 R recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 complement(1277236..1278339) Nautilia profundicola AmH 7505571 YP_002607776.1 CDS panC NC_012115.1 1278398 1279216 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 1278398..1279216 Nautilia profundicola AmH 7505347 YP_002607777.1 CDS NAMH_1384 NC_012115.1 1279356 1284362 R identified by glimmer; putative; hypothetical protein complement(1279356..1284362) Nautilia profundicola AmH 7505434 YP_002607778.1 CDS NAMH_1385 NC_012115.1 1284355 1284594 R putative NADH dehydrogenase 5 complement(1284355..1284594) Nautilia profundicola AmH 7504952 YP_002607779.1 CDS NAMH_1386 NC_012115.1 1284662 1285960 D identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125; hypothetical protein 1284662..1285960 Nautilia profundicola AmH 7505370 YP_002607780.1 CDS NAMH_1387 NC_012115.1 1285941 1286894 D identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) 1285941..1286894 Nautilia profundicola AmH 7504340 YP_002607781.1 CDS NAMH_1388 NC_012115.1 1287032 1287493 R HAD fAmily hydrolase fragment complement(1287032..1287493) Nautilia profundicola AmH 7504593 YP_002607782.1 CDS NAMH_1389 NC_012115.1 1287605 1288936 D identified by match to protein family HMM PF03783; putative curli production assembly/transport component CsgG subfamily 1287605..1288936 Nautilia profundicola AmH 7504808 YP_002607783.1 CDS NAMH_1390 NC_012115.1 1288947 1289417 D identified by glimmer; putative; hypothetical protein 1288947..1289417 Nautilia profundicola AmH 7503971 YP_002607784.1 CDS lspA NC_012115.1 1289485 1289949 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(1289485..1289949) Nautilia profundicola AmH 7505185 YP_002607785.1 CDS glmM NC_012115.1 1289967 1291289 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(1289967..1291289) Nautilia profundicola AmH 7504065 YP_002607786.1 CDS rpsT NC_012115.1 1291369 1291641 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1291369..1291641 Nautilia profundicola AmH 7504606 YP_002607787.1 CDS prfA NC_012115.1 1291751 1292818 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1291751..1292818 Nautilia profundicola AmH 7504771 YP_002607788.1 CDS NAMH_1396 NC_012115.1 1293234 1293641 R identified by match to protein family HMM PF00293; ADP-ribose pyrophosphatase complement(1293234..1293641) Nautilia profundicola AmH 7504228 YP_002607789.1 CDS NAMH_1397 NC_012115.1 1293764 1295749 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF08376; chemotaxis protein complement(1293764..1295749) Nautilia profundicola AmH 7504325 YP_002607790.1 CDS NAMH_1398 NC_012115.1 1295880 1296335 D identified by match to protein family HMM PF00578; match to protein family HMM PF08534; bacterioferritin comigratory protein 1295880..1296335 Nautilia profundicola AmH 7504728 YP_002607791.1 CDS smpB NC_012115.1 1296394 1296849 R identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086; SsrA-binding protein complement(1296394..1296849) Nautilia profundicola AmH 7504051 YP_002607792.1 CDS proB NC_012115.1 1296875 1297633 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(1296875..1297633) Nautilia profundicola AmH 7504841 YP_002607793.1 CDS NAMH_1401 NC_012115.1 1297614 1298687 R identified by match to protein family HMM PF01018; match to protein family HMM PF01926; match to protein family HMM TIGR02729; GTP-binding protein Obg/CgtA complement(1297614..1298687) Nautilia profundicola AmH 7504464 YP_002607794.1 CDS rpmA NC_012115.1 1298822 1299085 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(1298822..1299085) Nautilia profundicola AmH 7503829 YP_002607795.1 CDS rplU NC_012115.1 1299100 1299411 R identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 complement(1299100..1299411) Nautilia profundicola AmH 7505307 YP_002607796.1 CDS NAMH_1404 NC_012115.1 1299497 1299868 R identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; putative endoribonuclease L-PSP complement(1299497..1299868) Nautilia profundicola AmH 7504553 YP_002607797.1 CDS NAMH_1405 NC_012115.1 1300476 1301309 R identified by match to protein family HMM PF01734; patatin complement(1300476..1301309) Nautilia profundicola AmH 7505566 YP_002607798.1 CDS rpsI NC_012115.1 1301524 1301922 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(1301524..1301922) Nautilia profundicola AmH 7504450 YP_002607799.1 CDS rplM NC_012115.1 1301922 1302344 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(1301922..1302344) Nautilia profundicola AmH 7504107 YP_002607800.1 CDS NAMH_1408 NC_012115.1 1302459 1302923 R hypothetical protein complement(1302459..1302923) Nautilia profundicola AmH 7504860 YP_002607801.1 CDS NAMH_1409 NC_012115.1 1302916 1303425 R hypothetical protein complement(1302916..1303425) Nautilia profundicola AmH 7505029 YP_002607802.1 CDS ubiA NC_012115.1 1303425 1304264 R UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase complement(1303425..1304264) Nautilia profundicola AmH 7503921 YP_002607803.1 CDS miaA NC_012115.1 1304340 1305194 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1304340..1305194 Nautilia profundicola AmH 7505477 YP_002607804.1 CDS NAMH_1412 NC_012115.1 1305207 1306568 R identified by match to protein family HMM PF01474; match to protein family HMM TIGR01358; 3-deoxy-7-phosphoheptulonate synthase complement(1305207..1306568) Nautilia profundicola AmH 7504783 YP_002607805.1 CDS NAMH_1413 NC_012115.1 1306674 1308944 R hypothetical protein complement(1306674..1308944) Nautilia profundicola AmH 7504871 YP_002607806.1 CDS NAMH_1414 NC_012115.1 1308976 1310313 R identified by match to protein family HMM PF00361; putative NADH dehydrogenase i chain l complement(1308976..1310313) Nautilia profundicola AmH 7504567 YP_002607807.1 CDS NAMH_1415 NC_012115.1 1310313 1311740 R identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH-quinone oxidoreductase chain m complement(1310313..1311740) Nautilia profundicola AmH 7504909 YP_002607808.1 CDS NAMH_1416 NC_012115.1 1311741 1313594 R identified by match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974; NAD(P)H-quinone oxidoreductase chain 5 (NAD(P)Hdehydrogenase I, chain 5) complement(1311741..1313594) Nautilia profundicola AmH 7505122 YP_002607809.1 CDS NAMH_1417 NC_012115.1 1313587 1313895 R identified by match to protein family HMM PF00420; NAD(P)H-quinone oxidoreductase chain 4L (NAD(P)Hdehydrogenase I, chain 4L) complement(1313587..1313895) Nautilia profundicola AmH 7504287 YP_002607810.1 CDS NAMH_1418 NC_012115.1 1313898 1314365 R identified by match to protein family HMM PF00499; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily complement(1313898..1314365) Nautilia profundicola AmH 7505495 YP_002607811.1 CDS NAMH_1419 NC_012115.1 1314362 1314946 R identified by match to protein family HMM PF00037; NADH dehydrogenase subunit i complement(1314362..1314946) Nautilia profundicola AmH 7504122 YP_002607812.1 CDS NAMH_1420 NC_012115.1 1314948 1315919 R identified by match to protein family HMM PF00146; NADH-quinone oxidoreductase chain 8 complement(1314948..1315919) Nautilia profundicola AmH 7504085 YP_002607813.1 CDS NAMH_1421 NC_012115.1 1315929 1317578 R identified by match to protein family HMM PF00329; match to protein family HMM PF00346; NADH-ubiquinone oxidoreductase complement(1315929..1317578) Nautilia profundicola AmH 7504935 YP_002607814.1 CDS NAMH_1422 NC_012115.1 1317588 1318061 R identified by match to protein family HMM PF01058; match to protein family HMM TIGR01957; NADH-ubiquinone oxidoreductase 20 kda subunit complement(1317588..1318061) Nautilia profundicola AmH 7503908 YP_002607815.1 CDS NAMH_1423 NC_012115.1 1318045 1318383 R putative proton-translocating NADH-quinone oxidoreductase, a subunit complement(1318045..1318383) Nautilia profundicola AmH 7505008 YP_002607816.1 CDS NAMH_1424 NC_012115.1 1318543 1320255 R identified by match to protein family HMM PF00004; aaa family atpase complement(1318543..1320255) Nautilia profundicola AmH 7503876 YP_002607817.1 CDS NAMH_1425 NC_012115.1 1320306 1320965 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 1320306..1320965 Nautilia profundicola AmH 7504831 YP_002607818.1 CDS NAMH_1426 NC_012115.1 1320966 1322333 R hypothetical protein complement(1320966..1322333) Nautilia profundicola AmH 7504515 YP_002607819.1 CDS NAMH_1427 NC_012115.1 1322330 1324396 R identified by glimmer; putative; hypothetical protein complement(1322330..1324396) Nautilia profundicola AmH 7504549 YP_002607820.1 CDS NAMH_1428 NC_012115.1 1324422 1326926 R hypothetical protein complement(1324422..1326926) Nautilia profundicola AmH 7505410 YP_002607821.1 CDS NAMH_1429 NC_012115.1 1326904 1328271 R hypothetical protein complement(1326904..1328271) Nautilia profundicola AmH 7504465 YP_002607822.1 CDS NAMH_1430 NC_012115.1 1328271 1329755 R identified by match to protein family HMM PF00534; glycosyl transferase, group 1 complement(1328271..1329755) Nautilia profundicola AmH 7503922 YP_002607823.1 CDS NAMH_1431 NC_012115.1 1329745 1330566 R identified by glimmer; putative; hypothetical protein complement(1329745..1330566) Nautilia profundicola AmH 7504455 YP_002607824.1 CDS NAMH_1432 NC_012115.1 1330703 1331863 R identified by glimmer; putative; hypothetical protein complement(1330703..1331863) Nautilia profundicola AmH 7505545 YP_002607825.1 CDS NAMH_1433 NC_012115.1 1331860 1332345 R putative lipoprotein complement(1331860..1332345) Nautilia profundicola AmH 7505225 YP_002607826.1 CDS rdgB NC_012115.1 1332409 1332996 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase complement(1332409..1332996) Nautilia profundicola AmH 7504167 YP_002607827.1 CDS NAMH_1435 NC_012115.1 1332993 1334270 R putative periplasmic protein complement(1332993..1334270) Nautilia profundicola AmH 7504290 YP_002607828.1 CDS NAMH_1436 NC_012115.1 1334270 1335229 R putative periplasmic protein complement(1334270..1335229) Nautilia profundicola AmH 7504220 YP_002607829.1 CDS NAMH_1437 NC_012115.1 1335258 1337174 R identified by match to protein family HMM PF00563; match to protein family HMM PF00990; diguanylate cyclase/phosphodiesterase complement(1335258..1337174) Nautilia profundicola AmH 7504763 YP_002607830.1 CDS NAMH_1438 NC_012115.1 1337252 1340701 R identified by match to protein family HMM PF00873; acriflavin resistance protein complement(1337252..1340701) Nautilia profundicola AmH 7504632 YP_002607831.1 CDS NAMH_1439 NC_012115.1 1340710 1341747 R identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; secretion protein HlyD complement(1340710..1341747) Nautilia profundicola AmH 7505302 YP_002607832.1 CDS NAMH_1440 NC_012115.1 1341744 1343126 R identified by match to protein family HMM PF02321; outer membrane efflux protein complement(1341744..1343126) Nautilia profundicola AmH 7505223 YP_002607833.1 CDS NAMH_1441 NC_012115.1 1343262 1344419 D hypothetical protein 1343262..1344419 Nautilia profundicola AmH 7505492 YP_002607834.1 CDS typA NC_012115.1 1344774 1346582 R identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA complement(1344774..1346582) Nautilia profundicola AmH 7504714 YP_002607835.1 CDS NAMH_1443 NC_012115.1 1346767 1348467 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; putative mcp-domain signal transduction protein 1346767..1348467 Nautilia profundicola AmH 7504158 YP_002607836.1 CDS NAMH_1444 NC_012115.1 1348506 1349897 D an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; hypothetical protein 1348506..1349897 Nautilia profundicola AmH 7504148 YP_002607837.1 CDS NAMH_1445 NC_012115.1 1350161 1350832 D identified by match to protein family HMM PF03963; flagellar hook capping protein 1350161..1350832 Nautilia profundicola AmH 7504191 YP_002607838.1 CDS NAMH_1446 NC_012115.1 1350848 1352776 D identified by match to protein family HMM PF00460; match to protein family HMM PF06429; flagellar basal body and hook protein 1350848..1352776 Nautilia profundicola AmH 7504323 YP_002607839.1 CDS flgE NC_012115.1 1352825 1355386 D identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07559; match to protein family HMM TIGR02489; flagellar hook protein FlgE 1352825..1355386 Nautilia profundicola AmH 7503958 YP_002607840.1 CDS NAMH_1449 NC_012115.1 1355431 1357200 D identified by match to protein family HMM PF01973; hypothetical protein 1355431..1357200 Nautilia profundicola AmH 7505535 YP_002607841.1 CDS NAMH_1448 NC_012115.1 1357186 1358433 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase (ggdef) domain protein complement(1357186..1358433) Nautilia profundicola AmH 7504882 YP_002607842.1 CDS NAMH_1450 NC_012115.1 1358493 1360133 R DNA polymerase X family/PHP domain protein complement(1358493..1360133) Nautilia profundicola AmH 7503867 YP_002607843.1 CDS NAMH_1451 NC_012115.1 1360123 1360407 R identified by match to protein family HMM PF02594; match to protein family HMM TIGR00251; hypothetical protein complement(1360123..1360407) Nautilia profundicola AmH 7504088 YP_002607844.1 CDS NAMH_1453 NC_012115.1 1360474 1360899 D hypothetical protein 1360474..1360899 Nautilia profundicola AmH 7505463 YP_002607845.1 CDS NAMH_1452 NC_012115.1 1360880 1362010 R catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase complement(1360880..1362010) Nautilia profundicola AmH 7504165 YP_002607846.1 CDS NAMH_1454 NC_012115.1 1362013 1362738 R identified by match to protein family HMM PF02591; hypothetical protein complement(1362013..1362738) Nautilia profundicola AmH 7504109 YP_002607847.1 CDS NAMH_1455 NC_012115.1 1362865 1363584 R identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; hypothetical protein complement(1362865..1363584) Nautilia profundicola AmH 7504731 YP_002607848.1 CDS NAMH_1456 NC_012115.1 1363586 1364809 R identified by glimmer; putative; hypothetical protein complement(1363586..1364809) Nautilia profundicola AmH 7504522 YP_002607849.1 CDS glyQ NC_012115.1 1364826 1365668 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(1364826..1365668) Nautilia profundicola AmH 7504829 YP_002607850.1 CDS NAMH_1458 NC_012115.1 1365678 1366535 R identified by match to protein family HMM PF01937; hypothetical protein complement(1365678..1366535) Nautilia profundicola AmH 7504556 YP_002607851.1 CDS NAMH_1459 NC_012115.1 1366532 1366771 R identified by match to protein family HMM PF00462; glutaredoxin complement(1366532..1366771) Nautilia profundicola AmH 7504868 YP_002607852.1 CDS NAMH_1460 NC_012115.1 1366781 1367239 R hypothetical protein complement(1366781..1367239) Nautilia profundicola AmH 7505512 YP_002607853.1 CDS purE NC_012115.1 1367239 1367736 R identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase, catalytic subunit complement(1367239..1367736) Nautilia profundicola AmH 7505058 YP_002607854.1 CDS NAMH_1462 NC_012115.1 1367746 1369032 R identified by match to protein family HMM PF01136; peptidase, U32 family complement(1367746..1369032) Nautilia profundicola AmH 7503927 YP_002607855.1 CDS NAMH_1463 NC_012115.1 1369033 1369692 R hypothetical protein complement(1369033..1369692) Nautilia profundicola AmH 7505222 YP_002607856.1 CDS NAMH_1464 NC_012115.1 1369747 1370523 D identified by match to protein family HMM PF02811; match to protein family HMM TIGR01856; histidinol phosphatase 1369747..1370523 Nautilia profundicola AmH 7505261 YP_002607857.1 CDS NAMH_1465 NC_012115.1 1370533 1371777 D identified by match to protein family HMM PF07690; major facilitator superfamily MFS_1 1370533..1371777 Nautilia profundicola AmH 7503850 YP_002607858.1 CDS flgI NC_012115.1 1371885 1372880 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1371885..1372880 Nautilia profundicola AmH 7505046 YP_002607859.1 CDS NAMH_1467 NC_012115.1 1372891 1373166 D hypothetical protein 1372891..1373166 Nautilia profundicola AmH 7505284 YP_002607860.1 CDS NAMH_1468 NC_012115.1 1373224 1373403 D hypothetical protein 1373224..1373403 Nautilia profundicola AmH 7504098 YP_002607861.1 CDS NAMH_1469 NC_012115.1 1373446 1373856 D hypothetical protein 1373446..1373856 Nautilia profundicola AmH 7505479 YP_002607862.1 CDS flgK NC_012115.1 1373858 1376041 D identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492; flagellar hook-associated protein FlgK 1373858..1376041 Nautilia profundicola AmH 7504724 YP_002607863.1 CDS NAMH_1471 NC_012115.1 1376048 1376623 R identified by glimmer; putative; hypothetical protein complement(1376048..1376623) Nautilia profundicola AmH 7504054 YP_002607864.1 CDS NAMH_1472 NC_012115.1 1376665 1377390 D identified by match to protein family HMM TIGR02757; hypothetical protein 1376665..1377390 Nautilia profundicola AmH 7505112 YP_002607865.1 CDS atpB NC_012115.1 1377697 1378380 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 1377697..1378380 Nautilia profundicola AmH 7505028 YP_002607866.1 CDS NAMH_1474 NC_012115.1 1378420 1378671 D hypothetical protein 1378420..1378671 Nautilia profundicola AmH 7504534 YP_002607867.1 CDS NAMH_1476 NC_012115.1 1378664 1379185 D identified by match to protein family HMM PF02581; thiamine monophosphate synthase 1378664..1379185 Nautilia profundicola AmH 7504892 YP_002607868.1 CDS NAMH_1475 NC_012115.1 1379178 1380005 R catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase complement(1379178..1380005) Nautilia profundicola AmH 7504802 YP_002607869.1 CDS NAMH_1477 NC_012115.1 1380166 1382343 D identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303; outer membrane protein, OMP85 family 1380166..1382343 Nautilia profundicola AmH 7504604 YP_002607870.1 CDS lnt NC_012115.1 1382420 1383589 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(1382420..1383589) Nautilia profundicola AmH 7504308 YP_002607871.1 CDS yajC NC_012115.1 1383676 1383984 D identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739; preprotein translocase, YajC subunit 1383676..1383984 Nautilia profundicola AmH 7504215 YP_002607872.1 CDS secD NC_012115.1 1383971 1385527 D identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR01129; protein-export membrane protein SecD 1383971..1385527 Nautilia profundicola AmH 7504141 YP_002607873.1 CDS secF NC_012115.1 1385529 1386500 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1385529..1386500 Nautilia profundicola AmH 7504671 YP_002607874.1 CDS NAMH_1482 NC_012115.1 1386584 1386925 D hypothetical protein 1386584..1386925 Nautilia profundicola AmH 7505378 YP_002607875.1 CDS leuS NC_012115.1 1386941 1389400 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 1386941..1389400 Nautilia profundicola AmH 7504914 YP_002607876.1 CDS NAMH_1484 NC_012115.1 1389403 1389939 D putative lipoprotein 1389403..1389939 Nautilia profundicola AmH 7505131 YP_002607877.1 CDS NAMH_1485 NC_012115.1 1389929 1391467 D identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1389929..1391467 Nautilia profundicola AmH 7503893 YP_002607878.1 CDS NAMH_1486 NC_012115.1 1391485 1392669 D identified by match to protein family HMM PF08245; match to protein family HMM TIGR01499; folylpolyglutamate synthetase 1391485..1392669 Nautilia profundicola AmH 7504495 YP_002607879.1 CDS mfd NC_012115.1 1392650 1395574 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor 1392650..1395574 Nautilia profundicola AmH 7504794 YP_002607880.1 CDS NAMH_1489 NC_012115.1 1395814 1397295 R identified by match to protein family HMM PF00004; match to protein family HMM TIGR02397; DNA polymerase III, subunits gamma and tau complement(1395814..1397295) Nautilia profundicola AmH 7505187 YP_002607881.1 CDS NAMH_1490 NC_012115.1 1397310 1397606 R putative replication protein complement(1397310..1397606) Nautilia profundicola AmH 7504052 YP_002607882.1 CDS NAMH_1492 NC_012115.1 1398028 1399017 D identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787; c4-dicarboxylate-binding periplasmic protein 1398028..1399017 Nautilia profundicola AmH 7505165 YP_002607883.1 CDS NAMH_1493 NC_012115.1 1399014 1399583 D identified by match to protein family HMM PF04290; small integral c4-dicarboxylate membrane transport protein,putative 1399014..1399583 Nautilia profundicola AmH 7505529 YP_002607884.1 CDS NAMH_1494 NC_012115.1 1399580 1400866 D identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786; C4-dicarboxylate transport system permease, large subunit 1399580..1400866 Nautilia profundicola AmH 7504473 YP_002607885.1 CDS groS NC_012115.1 1401058 1401330 D identified by match to protein family HMM PF00166; chaperonin GroS 1401058..1401330 Nautilia profundicola AmH 7504767 YP_002607886.1 CDS groEL NC_012115.1 1401341 1402978 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 1401341..1402978 Nautilia profundicola AmH 7504711 YP_002607887.1 CDS NAMH_1497 NC_012115.1 1403123 1403488 R identified by glimmer; putative; hypothetical protein complement(1403123..1403488) Nautilia profundicola AmH 7504169 YP_002607888.1 CDS NAMH_1498 NC_012115.1 1403485 1403718 R identified by glimmer; putative; hypothetical protein complement(1403485..1403718) Nautilia profundicola AmH 7504095 YP_002607889.1 CDS NAMH_1499 NC_012115.1 1403715 1404776 R an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative; hypothetical protein complement(1403715..1404776) Nautilia profundicola AmH 7503986 YP_002607890.1 CDS NAMH_1500 NC_012115.1 1404989 1406341 R mobilization protein complement(1404989..1406341) Nautilia profundicola AmH 7505446 YP_002607891.1 CDS NAMH_1501 NC_012115.1 1406473 1406622 R identified by glimmer; putative; hypothetical protein complement(1406473..1406622) Nautilia profundicola AmH 7504796 YP_002607892.1 CDS NAMH_1502 NC_012115.1 1406701 1407078 R identified by glimmer; putative; hypothetical protein complement(1406701..1407078) Nautilia profundicola AmH 7504699 YP_002607893.1 CDS NAMH_1503 NC_012115.1 1407081 1407320 R serine/threonine kinase complement(1407081..1407320) Nautilia profundicola AmH 7504133 YP_002607894.1 CDS NAMH_1504 NC_012115.1 1407456 1408193 R identified by glimmer; putative; hypothetical protein complement(1407456..1408193) Nautilia profundicola AmH 7504175 YP_002607895.1 CDS NAMH_1505 NC_012115.1 1408183 1409979 R identified by glimmer; putative; hypothetical protein complement(1408183..1409979) Nautilia profundicola AmH 7504270 YP_002607896.1 CDS NAMH_1506 NC_012115.1 1409981 1410148 R identified by glimmer; putative; hypothetical protein complement(1409981..1410148) Nautilia profundicola AmH 7504025 YP_002607897.1 CDS NAMH_1507 NC_012115.1 1411136 1412905 R identified by match to protein family HMM PF00589; phage integrase family protein complement(1411136..1412905) Nautilia profundicola AmH 7504733 YP_002607898.1 CDS rplS NC_012115.1 1413356 1413712 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(1413356..1413712) Nautilia profundicola AmH 7505462 YP_002607899.1 CDS NAMH_1510 NC_012115.1 1413884 1415851 D identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229; diguanylate cyclase/phosphodiesterase 1413884..1415851 Nautilia profundicola AmH 7503842 YP_002607900.1 CDS trmD NC_012115.1 1415827 1416486 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(1415827..1416486) Nautilia profundicola AmH 7504314 YP_002607901.1 CDS rimM NC_012115.1 1416483 1417004 R identified by match to protein family HMM PF01782; match to protein family HMM PF05239; match to protein family HMM TIGR02273; 16S rRNA processing protein RimM complement(1416483..1417004) Nautilia profundicola AmH 7503916 YP_002607902.1 CDS NAMH_1512 NC_012115.1 1416997 1417239 R hypothetical protein complement(1416997..1417239) Nautilia profundicola AmH 7505325 YP_002607903.1 CDS rpsP NC_012115.1 1417239 1417484 R identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; ribosomal protein S16 complement(1417239..1417484) Nautilia profundicola AmH 7505233 YP_002607904.1 CDS ffh NC_012115.1 1417560 1418909 R identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein complement(1417560..1418909) Nautilia profundicola AmH 7505592 YP_002607905.1 CDS NAMH_1515 NC_012115.1 1418923 1419684 R identified by match to protein family HMM PF00849; ribosomal pseudouridine synthase complement(1418923..1419684) Nautilia profundicola AmH 7504460 YP_002607906.1 CDS NAMH_1516 NC_012115.1 1419890 1420234 D identified by glimmer; putative; hypothetical protein 1419890..1420234 Nautilia profundicola AmH 7505525 YP_002607907.1 CDS NAMH_1517 NC_012115.1 1420359 1421870 D hypothetical protein 1420359..1421870 Nautilia profundicola AmH 7504294 YP_002607908.1 CDS NAMH_1518 NC_012115.1 1421966 1424620 D identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; putative polysulfide reductase chain A 1421966..1424620 Nautilia profundicola AmH 7505365 YP_002607909.1 CDS NAMH_1519 NC_012115.1 1424624 1425292 D identified by match to protein family HMM PF00037; molybdopterin oxidoreductase, iron-sulfur binding subunit 1424624..1425292 Nautilia profundicola AmH 7504028 YP_002607910.1 CDS NAMH_1520 NC_012115.1 1425302 1426603 D identified by match to protein family HMM PF03916; polysulfide reductase NrfD family protein 1425302..1426603 Nautilia profundicola AmH 7504894 YP_002607911.1 CDS trx NC_012115.1 1426862 1427182 D identified by match to protein family HMM PF00085; match to protein family HMM PF00462; match to protein family HMM TIGR01068; thioredoxin 1426862..1427182 Nautilia profundicola AmH 7504526 YP_002607912.1 CDS NAMH_1522 NC_012115.1 1427231 1427614 D hypothetical protein 1427231..1427614 Nautilia profundicola AmH 7505542 YP_002607913.1 CDS trxB NC_012115.1 1427666 1428577 D identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase 1427666..1428577 Nautilia profundicola AmH 7504424 YP_002607914.1 CDS dapB NC_012115.1 1428579 1429340 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1428579..1429340 Nautilia profundicola AmH 7505210 YP_002607915.1 CDS purF NC_012115.1 1429357 1430694 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1429357..1430694 Nautilia profundicola AmH 7505486 YP_002607916.1 CDS NAMH_1526 NC_012115.1 1430763 1431704 D identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212; radical SAM protein, family 1430763..1431704 Nautilia profundicola AmH 7504761 YP_002607917.1 CDS NAMH_1528 NC_012115.1 1431719 1432303 D identified by match to protein family HMM PF08241; match to protein family HMM PF08242; S-adenosylmethionine-dependent methyltransferase 1431719..1432303 Nautilia profundicola AmH 7504483 YP_002607918.1 CDS NAMH_1527 NC_012115.1 1432293 1433264 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; ggdef domain protein complement(1432293..1433264) Nautilia profundicola AmH 7504174 YP_002607919.1 CDS NAMH_1529 NC_012115.1 1433287 1433868 R identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein complement(1433287..1433868) Nautilia profundicola AmH 7504993 YP_002607920.1 CDS NAMH_1531 NC_012115.1 1435364 1435978 R identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5,10-methenyltetrahydrofolate synthetase complement(1435364..1435978) Nautilia profundicola AmH 7504082 YP_002607921.1 CDS NAMH_1532 NC_012115.1 1436075 1436491 D putative lipoprotein 1436075..1436491 Nautilia profundicola AmH 7504954 YP_002607922.1 CDS ftsY NC_012115.1 1436492 1437361 D identified by match to protein family HMM PF00448; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY 1436492..1437361 Nautilia profundicola AmH 7505552 YP_002607923.1 CDS radA NC_012115.1 1437592 1438896 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1437592..1438896 Nautilia profundicola AmH 7505019 YP_002607924.1 CDS NAMH_1534 NC_012115.1 1438879 1439259 R identified by match to protein family HMM PF04519; hypothetical protein complement(1438879..1439259) Nautilia profundicola AmH 7504801 YP_002607925.1 CDS NAMH_1536 NC_012115.1 1439205 1440107 R identified by match to protein family HMM PF01551; peptidase, M23/M37 family complement(1439205..1440107) Nautilia profundicola AmH 7504224 YP_002607926.1 CDS NAMH_1537 NC_012115.1 1440111 1440926 R identified by match to protein family HMM PF00226; DnaJ domain protein complement(1440111..1440926) Nautilia profundicola AmH 7504489 YP_002607927.1 CDS NAMH_1538 NC_012115.1 1440916 1441641 R identified by match to protein family HMM PF01209; methlytransferase complement(1440916..1441641) Nautilia profundicola AmH 7504793 YP_002607928.1 CDS ribD NC_012115.1 1441643 1442620 R identified by match to protein family HMM PF00383; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD complement(1441643..1442620) Nautilia profundicola AmH 7503925 YP_002607929.1 CDS NAMH_1540 NC_012115.1 1442635 1443081 R identified by match to protein family HMM PF02576; hypothetical protein complement(1442635..1443081) Nautilia profundicola AmH 7504983 YP_002607930.1 CDS NAMH_1541 NC_012115.1 1443318 1444130 R identified by match to protein family HMM PF05116; match to protein family HMM PF08282; hypothetical protein complement(1443318..1444130) Nautilia profundicola AmH 7504741 YP_002607931.1 CDS rbfA NC_012115.1 1444127 1444474 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(1444127..1444474) Nautilia profundicola AmH 7504038 YP_002607932.1 CDS infB NC_012115.1 1444477 1446924 R identified by match to protein family HMM PF00009; match to protein family HMM PF01926; match to protein family HMM PF03144; match to protein family HMM PF04760; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR00487; translation initiation factor IF-2 complement(1444477..1446924) Nautilia profundicola AmH 7504123 YP_002607933.1 CDS NAMH_1544 NC_012115.1 1446938 1447189 R hypothetical protein complement(1446938..1447189) Nautilia profundicola AmH 7503953 YP_002607934.1 CDS thrB NC_012115.1 1447213 1448094 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase complement(1447213..1448094) Nautilia profundicola AmH 7505596 YP_002607935.1 CDS NAMH_1546 NC_012115.1 1448106 1448561 R hypothetical protein complement(1448106..1448561) Nautilia profundicola AmH 7504613 YP_002607936.1 CDS lpxC NC_012115.1 1448542 1449420 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(1448542..1449420) Nautilia profundicola AmH 7505120 YP_002607937.1 CDS minC NC_012115.1 1449417 1449944 R blocks the formation of polar Z-ring septums; septum formation inhibitor complement(1449417..1449944) Nautilia profundicola AmH 7503882 YP_002607938.1 CDS NAMH_1549 NC_012115.1 1449941 1451269 R identified by match to protein family HMM PF01551; peptidase M23B complement(1449941..1451269) Nautilia profundicola AmH 7505026 YP_002607939.1 CDS NAMH_1550 NC_012115.1 1451322 1452269 R identified by match to protein family HMM PF01368; match to protein family HMM PF02272; MgpA protein complement(1451322..1452269) Nautilia profundicola AmH 7504180 YP_002607940.1 CDS flhB NC_012115.1 1452503 1453558 R identified by match to protein family HMM PF01312; match to protein family HMM TIGR00328; flagellar biosynthetic protein FlhB complement(1452503..1453558) Nautilia profundicola AmH 7504408 YP_002607941.1 CDS NAMH_1552 NC_012115.1 1453558 1454859 R identified by match to protein family HMM PF00324; match to protein family HMM PF03845; cationic amino acid transporter complement(1453558..1454859) Nautilia profundicola AmH 7504696 YP_002607942.1 CDS bioD NC_012115.1 1454927 1455547 D identified by match to protein family HMM TIGR00347; dethiobiotin synthase 1454927..1455547 Nautilia profundicola AmH 7504612 YP_002607943.1 CDS NAMH_1554 NC_012115.1 1455548 1455943 D identified by match to protein family HMM PF03061; thioesterase superfamily 1455548..1455943 Nautilia profundicola AmH 7503827 YP_002607944.1 CDS NAMH_1555 NC_012115.1 1456073 1457476 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; ATP-dependent RNA helicase DeaD complement(1456073..1457476) Nautilia profundicola AmH 7504999 YP_002607945.1 CDS NAMH_1556 NC_012115.1 1457581 1458132 R hypothetical protein complement(1457581..1458132) Nautilia profundicola AmH 7504675 YP_002607946.1 CDS hisIE NC_012115.1 1458129 1458788 R identified by match to protein family HMM PF01502; match to protein family HMM PF01503; match to protein family HMM TIGR03188; match to protein family HMM TIGR03456; histidine biosynthesis bifunctional protein hisIE complement(1458129..1458788) Nautilia profundicola AmH 7505057 YP_002607947.1 CDS NAMH_1558 NC_012115.1 1458797 1459867 R identified by match to protein family HMM PF01145; spfh domain protein complement(1458797..1459867) Nautilia profundicola AmH 7504470 YP_002607948.1 CDS ilvE NC_012115.1 1459929 1460843 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(1459929..1460843) Nautilia profundicola AmH 7504879 YP_002607949.1 CDS NAMH_1561 NC_012115.1 1460932 1462350 D identified by match to protein family HMM PF00171; match to protein family HMM PF05893; aldehyde dehydrogenase 1460932..1462350 Nautilia profundicola AmH 7505340 YP_002607950.1 CDS NAMH_1560 NC_012115.1 1462347 1462538 R identified by glimmer; putative; hypothetical protein complement(1462347..1462538) Nautilia profundicola AmH 7504295 YP_002607951.1 CDS NAMH_1562 NC_012115.1 1462539 1462835 R identified by glimmer; putative; hypothetical protein complement(1462539..1462835) Nautilia profundicola AmH 7504755 YP_002607952.1 CDS NAMH_1563 NC_012115.1 1462988 1464136 R identified by match to protein family HMM PF01266; FAD-dependent oxidoreductase complement(1462988..1464136) Nautilia profundicola AmH 7503945 YP_002607953.1 CDS NAMH_1564 NC_012115.1 1464231 1464848 R putative recombination protein RecO complement(1464231..1464848) Nautilia profundicola AmH 7504170 YP_002607954.1 CDS NAMH_1565 NC_012115.1 1464886 1465692 R putative lipoprotein complement(1464886..1465692) Nautilia profundicola AmH 7505568 YP_002607955.1 CDS NAMH_1566 NC_012115.1 1465693 1468905 R identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414; putative outer membrane autotransporter barrel domain protein complement(1465693..1468905) Nautilia profundicola AmH 7504629 YP_002607956.1 CDS NAMH_1568 NC_012115.1 1469077 1470132 D identified by match to protein family HMM PF00165; match to protein family HMM PF02796; transcriptional regulator 1469077..1470132 Nautilia profundicola AmH 7505423 YP_002607957.1 CDS NAMH_1569 NC_012115.1 1470257 1474633 D identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898; glutamate synthase [NADPH] large chain 1470257..1474633 Nautilia profundicola AmH 7505373 YP_002607958.1 CDS NAMH_1570 NC_012115.1 1474643 1475347 D identified by match to protein family HMM PF02754; GlpC protein 1474643..1475347 Nautilia profundicola AmH 7505324 YP_002607959.1 CDS NAMH_1571 NC_012115.1 1475334 1476635 D identified by match to protein family HMM PF00037; match to protein family HMM PF02589; electron transport protein 1475334..1476635 Nautilia profundicola AmH 7504266 YP_002607960.1 CDS NAMH_1572 NC_012115.1 1476659 1476994 D identified by match to protein family HMM PF02589; YkgG family protein 1476659..1476994 Nautilia profundicola AmH 7505130 YP_002607961.1 CDS NAMH_1573 NC_012115.1 1477044 1477310 D identified by match to protein family HMM PF01106; NifU family protein 1477044..1477310 Nautilia profundicola AmH 7504744 YP_002607962.1 CDS NAMH_1574 NC_012115.1 1477319 1477768 D identified by glimmer; putative; hypothetical protein 1477319..1477768 Nautilia profundicola AmH 7504358 YP_002607963.1 CDS NAMH_1575 NC_012115.1 1477765 1478739 D geranylgeranyl hydrogenase 1477765..1478739 Nautilia profundicola AmH 7504188 YP_002607964.1 CDS NAMH_1577 NC_012115.1 1478766 1479584 D identified by match to protein family HMM PF00291; cysteine synthase (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) 1478766..1479584 Nautilia profundicola AmH 7504881 YP_002607965.1 CDS NAMH_1576 NC_012115.1 1479571 1480722 R identified by match to protein family HMM PF01464; membrane-bound lytic murein transglycosylase C complement(1479571..1480722) Nautilia profundicola AmH 7504151 YP_002607966.1 CDS NAMH_1579 NC_012115.1 1480966 1481451 R putative ATP-dependent Lon protease complement(1480966..1481451) Nautilia profundicola AmH 7505186 YP_002607967.1 CDS argJ NC_012115.1 1481451 1482635 R bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein complement(1481451..1482635) Nautilia profundicola AmH 7505587 YP_002607968.1 CDS NAMH_1581 NC_012115.1 1482697 1483845 R identified by match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF07885; TrkA complement(1482697..1483845) Nautilia profundicola AmH 7504661 YP_002607969.1 CDS rpmB NC_012115.1 1483867 1484052 R identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; ribosomal protein L28 complement(1483867..1484052) Nautilia profundicola AmH 7503929 YP_002607970.1 CDS NAMH_1583 NC_012115.1 1484154 1485317 R tetrahydrodipicolinate N-succinyltransferase complement(1484154..1485317) Nautilia profundicola AmH 7503933 YP_002607971.1 CDS NAMH_1584 NC_012115.1 1485350 1487398 R identified by match to protein family HMM PF00563; match to protein family HMM PF00990; diguanylate cyclase/phosphodiesterase complement(1485350..1487398) Nautilia profundicola AmH 7504747 YP_002607972.1 CDS glmS NC_012115.1 1487408 1489180 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(1487408..1489180) Nautilia profundicola AmH 7505465 YP_002607973.1 CDS galU NC_012115.1 1489180 1489992 R identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase complement(1489180..1489992) Nautilia profundicola AmH 7504379 YP_002607974.1 CDS NAMH_1587 NC_012115.1 1489992 1491602 R identified by match to protein family HMM PF00999; match to protein family HMM PF02254; sodium/hydrogen exchanger family protein complement(1489992..1491602) Nautilia profundicola AmH 7504691 YP_002607975.1 CDS NAMH_1588 NC_012115.1 1491595 1491981 R identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein complement(1491595..1491981) Nautilia profundicola AmH 7504448 YP_002607976.1 CDS NAMH_1589 NC_012115.1 1492004 1492765 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase B complement(1492004..1492765) Nautilia profundicola AmH 7503846 YP_002607977.1 CDS NAMH_1590 NC_012115.1 1492861 1493805 R identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; carbohydrate isomerase, KpsF/GutQ family complement(1492861..1493805) Nautilia profundicola AmH 7504992 YP_002607978.1 CDS acnB NC_012115.1 1494000 1496594 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 1494000..1496594 Nautilia profundicola AmH 7504821 YP_002607979.1 CDS NAMH_1592 NC_012115.1 1496964 1497683 R YheB complement(1496964..1497683) Nautilia profundicola AmH 7503954 YP_002607980.1 CDS NAMH_1593 NC_012115.1 1497680 1498021 R identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; arsenate reductase complement(1497680..1498021) Nautilia profundicola AmH 7504355 YP_002607981.1 CDS NAMH_1594 NC_012115.1 1498018 1498389 R hypothetical protein complement(1498018..1498389) Nautilia profundicola AmH 7504598 YP_002607982.1 CDS NAMH_1595 NC_012115.1 1498452 1499468 R identified by match to protein family HMM PF03102; match to protein family HMM PF08666; match to protein family HMM TIGR03586; N-acetylneuraminic acid synthetase complement(1498452..1499468) Nautilia profundicola AmH 7504752 YP_002607983.1 CDS NAMH_1596 NC_012115.1 1499468 1499995 R identified by glimmer; putative; hypothetical protein complement(1499468..1499995) Nautilia profundicola AmH 7504452 YP_002607984.1 CDS NAMH_1597 NC_012115.1 1499982 1501157 R an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05893; putative acyl-CoA reductase LuxC complement(1499982..1501157) Nautilia profundicola AmH 7505501 YP_002607985.1 CDS NAMH_1598 NC_012115.1 1501138 1502187 R identified by match to protein family HMM PF04443; acyl protein synthase/acyl-CoA reductase RfbN complement(1501138..1502187) Nautilia profundicola AmH 7505204 YP_002607986.1 CDS NAMH_1599 NC_012115.1 1502180 1503496 R identified by match to protein family HMM PF00501; hypothetical protein complement(1502180..1503496) Nautilia profundicola AmH 7504077 YP_002607987.1 CDS NAMH_1600 NC_012115.1 1503478 1504209 R identified by match to protein family HMM PF00106; 3-oxoacyl-ACP reductase complement(1503478..1504209) Nautilia profundicola AmH 7505071 YP_002607988.1 CDS NAMH_1601 NC_012115.1 1504209 1504328 R identified by glimmer; putative; hypothetical protein complement(1504209..1504328) Nautilia profundicola AmH 7504433 YP_002607989.1 CDS NAMH_1602 NC_012115.1 1504375 1505178 R putative flagellar protein complement(1504375..1505178) Nautilia profundicola AmH 7504859 YP_002607990.1 CDS tagD NC_012115.1 1505263 1505649 R identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01518; glycerol-3-phosphate cytidylyltransferase complement(1505263..1505649) Nautilia profundicola AmH 7505266 YP_002607991.1 CDS NAMH_1604 NC_012115.1 1505646 1507118 R identified by match to protein family HMM PF04464; putative glycerol phosphotransferase complement(1505646..1507118) Nautilia profundicola AmH 7505332 YP_002607992.1 CDS NAMH_1605 NC_012115.1 1507115 1508515 R identified by match to protein family HMM PF04464; putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC complement(1507115..1508515) Nautilia profundicola AmH 7504097 YP_002607993.1 CDS NAMH_1606 NC_012115.1 1508517 1509863 R identified by match to protein family HMM PF00106; match to protein family HMM PF01128; match to protein family HMM TIGR00453; pyrophosphorylase complement(1508517..1509863) Nautilia profundicola AmH 7504597 YP_002607994.1 CDS NAMH_1607 NC_012115.1 1509863 1510558 R identified by match to protein family HMM PF02348; match to protein family HMM TIGR03584; CMP-N-acetylneuraminic acid synthetase complement(1509863..1510558) Nautilia profundicola AmH 7504103 YP_002607995.1 CDS NAMH_1608 NC_012115.1 1510555 1511658 R identified by match to protein family HMM PF01041; match to protein family HMM PF01212; spore coat polysaccharide biosynthesis protein SpsC complement(1510555..1511658) Nautilia profundicola AmH 7504205 YP_002607996.1 CDS NAMH_1609 NC_012115.1 1511673 1512662 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR03589; polysaccharide biosynthesis protein complement(1511673..1512662) Nautilia profundicola AmH 7504792 YP_002607997.1 CDS NAMH_1610 NC_012115.1 1512731 1514662 D identified by match to protein family HMM PF01973; motility accessory factor 1512731..1514662 Nautilia profundicola AmH 7503984 YP_002607998.1 CDS NAMH_1611 NC_012115.1 1514803 1516284 R identified by match to protein family HMM PF00669; match to protein family HMM PF00700; match to protein family HMM PF07196; major flagellin subunit FlaA_2 complement(1514803..1516284) Nautilia profundicola AmH 7505132 YP_002607999.1 CDS NAMH_1612 NC_012115.1 1516495 1517964 R FlaA; structural flagella protein; in Helicobacter the flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions; flagellin complement(1516495..1517964) Nautilia profundicola AmH 7505360 YP_002608000.1 CDS infA NC_012115.1 1523906 1524124 R identified by match to protein family HMM PF00575; match to protein family HMM PF01176; match to protein family HMM TIGR00008; translation initiation factor IF-1 complement(1523906..1524124) Nautilia profundicola AmH 7504251 YP_002608001.1 CDS map NC_012115.1 1524124 1524882 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(1524124..1524882) Nautilia profundicola AmH 7505246 YP_002608002.1 CDS secY NC_012115.1 1524908 1526167 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(1524908..1526167) Nautilia profundicola AmH 7505349 YP_002608003.1 CDS rplO NC_012115.1 1526172 1526564 R late assembly protein; 50S ribosomal protein L15 complement(1526172..1526564) Nautilia profundicola AmH 7504268 YP_002608004.1 CDS rpsE NC_012115.1 1526567 1527043 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(1526567..1527043) Nautilia profundicola AmH 7504006 YP_002608005.1 CDS rplR NC_012115.1 1527060 1527425 R identified by match to protein family HMM PF00861; match to protein family HMM TIGR00060; 50S ribosomal protein L18 complement(1527060..1527425) Nautilia profundicola AmH 7505388 YP_002608006.1 CDS rplF NC_012115.1 1527435 1527971 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(1527435..1527971) Nautilia profundicola AmH 7504446 YP_002608007.1 CDS rpsH NC_012115.1 1527983 1528378 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(1527983..1528378) Nautilia profundicola AmH 7504847 YP_002608008.1 CDS rpsN NC_012115.1 1528391 1528576 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 complement(1528391..1528576) Nautilia profundicola AmH 7505241 YP_002608009.1 CDS rplE NC_012115.1 1528578 1529123 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(1528578..1529123) Nautilia profundicola AmH 7505551 YP_002608010.1 CDS rplX NC_012115.1 1529128 1529379 R identified by match to protein family HMM PF00467; match to protein family HMM TIGR01079; ribosomal protein L24 complement(1529128..1529379) Nautilia profundicola AmH 7504110 YP_002608011.1 CDS rplN NC_012115.1 1529379 1529747 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(1529379..1529747) Nautilia profundicola AmH 7504227 YP_002608012.1 CDS rpsQ NC_012115.1 1529750 1529995 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(1529750..1529995) Nautilia profundicola AmH 7504324 YP_002608013.1 CDS rpmC NC_012115.1 1529995 1530201 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(1529995..1530201) Nautilia profundicola AmH 7505348 YP_002608014.1 CDS rplP NC_012115.1 1530188 1530613 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(1530188..1530613) Nautilia profundicola AmH 7504427 YP_002608015.1 CDS rpsC NC_012115.1 1530591 1531313 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(1530591..1531313) Nautilia profundicola AmH 7504184 YP_002608016.1 CDS rplV NC_012115.1 1531313 1531633 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(1531313..1531633) Nautilia profundicola AmH 7504576 YP_002608017.1 CDS rpsS NC_012115.1 1531643 1531924 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(1531643..1531924) Nautilia profundicola AmH 7505591 YP_002608018.1 CDS rplB NC_012115.1 1531934 1532758 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(1531934..1532758) Nautilia profundicola AmH 7504491 YP_002608019.1 CDS rplW NC_012115.1 1532768 1533049 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(1532768..1533049) Nautilia profundicola AmH 7504770 YP_002608020.1 CDS rplD NC_012115.1 1533053 1533634 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(1533053..1533634) Nautilia profundicola AmH 7505096 YP_002608021.1 CDS rplC NC_012115.1 1533631 1534206 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(1533631..1534206) Nautilia profundicola AmH 7504672 YP_002608022.1 CDS rpsJ NC_012115.1 1534217 1534525 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(1534217..1534525) Nautilia profundicola AmH 7504647 YP_002608023.1 CDS NAMH_1643 NC_012115.1 1534647 1535315 R identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; hypothetical protein complement(1534647..1535315) Nautilia profundicola AmH 7505598 YP_002608024.1 CDS NAMH_1644 NC_012115.1 1535494 1536573 R identified by match to protein family HMM PF01061; putative ABC-2 complement(1535494..1536573) Nautilia profundicola AmH 7504945 YP_002608025.1 CDS NAMH_1645 NC_012115.1 1536570 1537673 R an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01061; ABC transporter complement(1536570..1537673) Nautilia profundicola AmH 7505433 YP_002608026.1 CDS NAMH_1646 NC_012115.1 1537663 1539267 R an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein/permease complement(1537663..1539267) Nautilia profundicola AmH 7505478 YP_002608027.1 CDS NAMH_1647 NC_012115.1 1539441 1540550 R identified by match to protein family HMM PF00529; putative membrane fusion protein complement(1539441..1540550) Nautilia profundicola AmH 7505240 YP_002608028.1 CDS NAMH_1648 NC_012115.1 1540540 1541847 R identified by match to protein family HMM PF02321; outer membrane efflux protein complement(1540540..1541847) Nautilia profundicola AmH 7504900 YP_002608029.1 CDS NAMH_1649 NC_012115.1 1541837 1543345 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; major facilitator family transporter complement(1541837..1543345) Nautilia profundicola AmH 7504118 YP_002608030.1 CDS NAMH_1650 NC_012115.1 1543332 1543685 R identified by match to protein family HMM PF05635; match to protein family HMM TIGR02436; hypothetical protein complement(1543332..1543685) Nautilia profundicola AmH 7505604 YP_002608031.1 CDS NAMH_1651 NC_012115.1 1543715 1544839 R identified by match to protein family HMM PF00529; hypothetical protein complement(1543715..1544839) Nautilia profundicola AmH 7504449 YP_002608032.1 CDS NAMH_1652 NC_012115.1 1544912 1547062 R identified by match to protein family HMM PF02516; oligosaccharyl transferase, STT3 subunit complement(1544912..1547062) Nautilia profundicola AmH 7504225 YP_002608033.1 CDS NAMH_1653 NC_012115.1 1547128 1547973 D an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02706; chain length determinant protein 1547128..1547973 Nautilia profundicola AmH 7504292 YP_002608034.1 CDS NAMH_1655 NC_012115.1 1547970 1548878 D identified by match to protein family HMM PF02397; sugar transferase 1547970..1548878 Nautilia profundicola AmH 7505607 YP_002608035.1 CDS NAMH_1654 NC_012115.1 1548875 1549618 R identified by match to protein family HMM PF00535; teichuronic acid biosynthesis complement(1548875..1549618) Nautilia profundicola AmH 7505381 YP_002608036.1 CDS NAMH_1656 NC_012115.1 1549611 1550885 R identified by match to protein family HMM PF04932; O-Antigen Polymerase family complement(1549611..1550885) Nautilia profundicola AmH 7505345 YP_002608037.1 CDS NAMH_1657 NC_012115.1 1550851 1551804 R D-glucuronyl C5-epimerase complement(1550851..1551804) Nautilia profundicola AmH 7504137 YP_002608038.1 CDS NAMH_1658 NC_012115.1 1551791 1552885 R identified by glimmer; putative; hypothetical protein complement(1551791..1552885) Nautilia profundicola AmH 7504312 YP_002608039.1 CDS NAMH_1659 NC_012115.1 1552882 1554018 R identified by match to protein family HMM PF00534; putative glycosyl transferase complement(1552882..1554018) Nautilia profundicola AmH 7505387 YP_002608040.1 CDS NAMH_1660 NC_012115.1 1554071 1554274 R identified by glimmer; putative; hypothetical protein complement(1554071..1554274) Nautilia profundicola AmH 7504775 YP_002608041.1 CDS NAMH_1661 NC_012115.1 1554261 1555415 R identified by match to protein family HMM PF01075; heptosyltransferase family complement(1554261..1555415) Nautilia profundicola AmH 7504769 YP_002608042.1 CDS NAMH_1662 NC_012115.1 1555412 1556137 R identified by glimmer; putative; hypothetical protein complement(1555412..1556137) Nautilia profundicola AmH 7503936 YP_002608043.1 CDS NAMH_1663 NC_012115.1 1556137 1556787 R identified by glimmer; putative; hypothetical protein complement(1556137..1556787) Nautilia profundicola AmH 7504381 YP_002608044.1 CDS NAMH_1664 NC_012115.1 1556787 1557002 R identified by glimmer; putative; hypothetical protein complement(1556787..1557002) Nautilia profundicola AmH 7504311 YP_002608045.1 CDS NAMH_1665 NC_012115.1 1556995 1558116 R identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein complement(1556995..1558116) Nautilia profundicola AmH 7505509 YP_002608046.1 CDS NAMH_1666 NC_012115.1 1558118 1559425 R identified by match to protein family HMM PF01943; polysaccharide biosynthesis protein complement(1558118..1559425) Nautilia profundicola AmH 7503834 YP_002608047.1 CDS NAMH_1667 NC_012115.1 1559426 1560637 R identified by match to protein family HMM PF01370; GDP-L-fucose synthase 1 complement(1559426..1560637) Nautilia profundicola AmH 7504921 YP_002608048.1 CDS gmd NC_012115.1 1560639 1561817 R identified by match to protein family HMM PF01370; match to protein family HMM TIGR01472; GDP-mannose 4,6-dehydratase complement(1560639..1561817) Nautilia profundicola AmH 7504823 YP_002608049.1 CDS NAMH_1669 NC_012115.1 1561810 1562259 R identified by match to protein family HMM PF00293; GDP-mannose mannosyl hydrolase complement(1561810..1562259) Nautilia profundicola AmH 7503890 YP_002608050.1 CDS NAMH_1670 NC_012115.1 1562259 1563686 R identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(1562259..1563686) Nautilia profundicola AmH 7504120 YP_002608051.1 CDS NAMH_1671 NC_012115.1 1563696 1564739 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein complement(1563696..1564739) Nautilia profundicola AmH 7504262 YP_002608052.1 CDS NAMH_1672 NC_012115.1 1564736 1565029 R hypothetical protein complement(1564736..1565029) Nautilia profundicola AmH 7505323 YP_002608053.1 CDS NAMH_1673 NC_012115.1 1564992 1565465 R hypothetical protein complement(1564992..1565465) Nautilia profundicola AmH 7505002 YP_002608054.1 CDS NAMH_1674 NC_012115.1 1565485 1566123 R an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00984; match to protein family HMM PF03720; UDP-glucose 6-dehydrogenase complement(1565485..1566123) Nautilia profundicola AmH 7505239 YP_002608055.1 CDS NAMH_1675 NC_012115.1 1566297 1566677 R an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01210; match to protein family HMM PF03721; UDP-glucose 6-dehydrogenase complement(1566297..1566677) Nautilia profundicola AmH 7504445 YP_002608056.1 CDS NAMH_1676 NC_012115.1 1566674 1567096 R identified by match to protein family HMM PF05635; S23 ribosomal complement(1566674..1567096) Nautilia profundicola AmH 7505544 YP_002608057.1 CDS NAMH_1677 NC_012115.1 1567228 1567464 R identified by match to protein family HMM TIGR00426; hypothetical protein complement(1567228..1567464) Nautilia profundicola AmH 7504544 YP_002608058.1 CDS galE NC_012115.1 1567490 1568494 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase complement(1567490..1568494) Nautilia profundicola AmH 7504015 YP_002608059.1 CDS NAMH_1679 NC_012115.1 1568491 1568910 R putative lipoprotein complement(1568491..1568910) Nautilia profundicola AmH 7504899 YP_002608060.1 CDS NAMH_1680 NC_012115.1 1568934 1569374 R hypothetical protein complement(1568934..1569374) Nautilia profundicola AmH 7504275 YP_002608061.1 CDS NAMH_1681 NC_012115.1 1569361 1569783 R hypothetical protein complement(1569361..1569783) Nautilia profundicola AmH 7504176 YP_002608062.1 CDS purA NC_012115.1 1569780 1571021 R identified by match to protein family HMM PF00709; match to protein family HMM TIGR00184; adenylosuccinate synthetase complement(1569780..1571021) Nautilia profundicola AmH 7505400 YP_002608063.1 CDS hisZ NC_012115.1 1571014 1571829 R May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit complement(1571014..1571829) Nautilia profundicola AmH 7505321 YP_002608064.1 CDS NAMH_1684 NC_012115.1 1571829 1572923 R identified by match to protein family HMM PF00266; putative aminotransferase complement(1571829..1572923) Nautilia profundicola AmH 7504017 YP_002608065.1 CDS tkt NC_012115.1 1572920 1574776 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(1572920..1574776) Nautilia profundicola AmH 7505427 YP_002608066.1 CDS NAMH_1686 NC_012115.1 1574776 1575621 R identified by match to protein family HMM PF00348; geranyltranstransferase complement(1574776..1575621) Nautilia profundicola AmH 7504260 YP_002608067.1 CDS NAMH_1687 NC_012115.1 1575625 1576521 R hypothetical protein complement(1575625..1576521) Nautilia profundicola AmH 7504840 YP_002608068.1 CDS NAMH_1688 NC_012115.1 1576518 1576805 R identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein complement(1576518..1576805) Nautilia profundicola AmH 7504233 YP_002608069.1 CDS panD NC_012115.1 1576805 1577179 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(1576805..1577179) Nautilia profundicola AmH 7504304 YP_002608070.1 CDS NAMH_1690 NC_012115.1 1577189 1577524 R ferredoxin, 2Fe-2S complement(1577189..1577524) Nautilia profundicola AmH 7503950 YP_002608071.1 CDS NAMH_1691 NC_012115.1 1577702 1578934 R identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01085; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(1577702..1578934) Nautilia profundicola AmH 7504825 YP_002608072.1 CDS NAMH_1692 NC_012115.1 1578951 1579244 R hypothetical protein complement(1578951..1579244) Nautilia profundicola AmH 7505114 YP_002608073.1 CDS NAMH_1693 NC_012115.1 1579294 1579590 R identified by match to protein family HMM PF01106; NifU family protein complement(1579294..1579590) Nautilia profundicola AmH 7505245 YP_002608074.1 CDS rplQ NC_012115.1 1579592 1579960 R identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059; ribosomal protein L17 complement(1579592..1579960) Nautilia profundicola AmH 7504708 YP_002608075.1 CDS rpoA NC_012115.1 1579960 1580952 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(1579960..1580952) Nautilia profundicola AmH 7504637 YP_002608076.1 CDS rpsD NC_012115.1 1580966 1581592 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(1580966..1581592) Nautilia profundicola AmH 7505063 YP_002608077.1 CDS rpsK NC_012115.1 1581595 1581987 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(1581595..1581987) Nautilia profundicola AmH 7504195 YP_002608078.1 CDS rpsM NC_012115.1 1581998 1582366 R identified by match to protein family HMM PF00416; 30S ribosomal protein S13 complement(1581998..1582366) Nautilia profundicola AmH 7505218 YP_002608079.1 CDS NAMH_1699 NC_012115.1 1582784 1584070 R identified by match to protein family HMM PF00860; match to protein family HMM PF00916; xanthine/uracil/vitamin C permease complement(1582784..1584070) Nautilia profundicola AmH 7503935 YP_002608080.1 CDS NAMH_1700 NC_012115.1 1584179 1584601 R identified by match to protein family HMM PF00011; heat shock protein Hsp20 complement(1584179..1584601) Nautilia profundicola AmH 7505273 YP_002608081.1 CDS NAMH_1701 NC_012115.1 1584686 1586026 R identified by glimmer; putative; hypothetical protein complement(1584686..1586026) Nautilia profundicola AmH 7504644 YP_002608082.1 CDS NAMH_1702 NC_012115.1 1586019 1587110 R identified by match to protein family HMM PF00924; mechanosensitive ion channel complement(1586019..1587110) Nautilia profundicola AmH 7505025 YP_002608083.1 CDS NAMH_1703 NC_012115.1 1587112 1588818 R identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein complement(1587112..1588818) Nautilia profundicola AmH 7504187 YP_002608084.1 CDS fliE NC_012115.1 1588818 1589108 R identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205; flagellar hook-basal body complex protein (FliE) complement(1588818..1589108) Nautilia profundicola AmH 7504322 YP_002608085.1 CDS flgC NC_012115.1 1589119 1589616 R with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC complement(1589119..1589616) Nautilia profundicola AmH 7505384 YP_002608086.1 CDS flgB NC_012115.1 1589626 1590057 R with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB complement(1589626..1590057) Nautilia profundicola AmH 7504050 YP_002608087.1 CDS NAMH_1707 NC_012115.1 1590238 1591377 D identified by match to protein family HMM PF01098; cell cycle protein 1590238..1591377 Nautilia profundicola AmH 7505101 YP_002608088.1 CDS murG NC_012115.1 1591374 1592420 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDP diphospho-muramoyl pentapeptide beta-N acetylglucosaminyl transferase 1591374..1592420 Nautilia profundicola AmH 7505358 YP_002608089.1 CDS gmhA NC_012115.1 1592400 1592957 R identified by match to protein family HMM TIGR00441; phosphoheptose isomerase complement(1592400..1592957) Nautilia profundicola AmH 7503816 YP_002608090.1 CDS NAMH_1710 NC_012115.1 1592960 1594348 R identified by match to protein family HMM PF00294; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02198; match to protein family HMM TIGR02199; bifunctional protein HldE complement(1592960..1594348) Nautilia profundicola AmH 7504957 YP_002608091.1 CDS rfaD NC_012115.1 1594345 1595340 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR02197; ADP-L-glycero-D-manno-heptose-6-epimerase complement(1594345..1595340) Nautilia profundicola AmH 7505243 YP_002608092.1 CDS NAMH_1712 NC_012115.1 1595337 1595825 R identified by match to protein family HMM PF08645; match to protein family HMM TIGR00213; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662; D,D-heptose 1,7-bisphosphate phosphatase complement(1595337..1595825) Nautilia profundicola AmH 7505540 YP_002608093.1 CDS rfaF NC_012115.1 1595822 1596703 R identified by match to protein family HMM PF01075; match to protein family HMM TIGR02195; lipopolysaccharide heptosyltransferase II complement(1595822..1596703) Nautilia profundicola AmH 7504965 YP_002608094.1 CDS NAMH_1714 NC_012115.1 1596687 1597691 R identified by match to protein family HMM PF00534; WabG complement(1596687..1597691) Nautilia profundicola AmH 7504897 YP_002608095.1 CDS NAMH_1715 NC_012115.1 1597672 1598937 R identified by match to protein family HMM PF04932; O-Antigen Polymerase family complement(1597672..1598937) Nautilia profundicola AmH 7504500 YP_002608096.1 CDS NAMH_1716 NC_012115.1 1598952 1600076 R identified by match to protein family HMM PF00534; WbwB complement(1598952..1600076) Nautilia profundicola AmH 7504255 YP_002608097.1 CDS NAMH_1717 NC_012115.1 1600073 1600633 R identified by match to protein family HMM PF00132; acetyltransferase, CysE/LacA/LpxA/NodL family complement(1600073..1600633) Nautilia profundicola AmH 7503849 YP_002608098.1 CDS NAMH_1718 NC_012115.1 1600623 1601705 R identified by match to protein family HMM PF01075; glycosyl transferase, family 9 complement(1600623..1601705) Nautilia profundicola AmH 7504376 YP_002608099.1 CDS NAMH_1719 NC_012115.1 1601702 1602640 R identified by match to protein family HMM PF01075; putative heptosyliii transferase complement(1601702..1602640) Nautilia profundicola AmH 7505406 YP_002608100.1 CDS NAMH_1720 NC_012115.1 1602637 1603704 R identified by match to protein family HMM PF00534; putative WalR protein complement(1602637..1603704) Nautilia profundicola AmH 7504779 YP_002608101.1 CDS NAMH_1721 NC_012115.1 1603701 1604759 R identified by match to protein family HMM PF01075; match to protein family HMM TIGR02201; putative lipopolysaccharide heptosyltransferase III complement(1603701..1604759) Nautilia profundicola AmH 7503974 YP_002608102.1 CDS NAMH_1722 NC_012115.1 1604756 1605463 R identified by match to protein family HMM PF00535; lipopolysaccharide core biosynthesis glycosyl transferase WaaE complement(1604756..1605463) Nautilia profundicola AmH 7504815 YP_002608103.1 CDS NAMH_1723 NC_012115.1 1605456 1606325 R identified by match to protein family HMM PF03279; lipid A biosynthesis acyltransferase complement(1605456..1606325) Nautilia profundicola AmH 7504830 YP_002608104.1 CDS NAMH_1724 NC_012115.1 1606315 1607232 R identified by match to protein family HMM PF01075; lipopolysaccharide heptosyltransferase I complement(1606315..1607232) Nautilia profundicola AmH 7504371 YP_002608105.1 CDS NAMH_1726 NC_012115.1 1607290 1608990 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; multidrug resistance protein msba 1607290..1608990 Nautilia profundicola AmH 7505148 YP_002608106.1 CDS NAMH_1725 NC_012115.1 1608982 1610361 R identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; YjeF-related protein N-terminus complement(1608982..1610361) Nautilia profundicola AmH 7505024 YP_002608107.1 CDS NAMH_1727 NC_012115.1 1610439 1611065 R identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein complement(1610439..1611065) Nautilia profundicola AmH 7504929 YP_002608108.1 CDS NAMH_1728 NC_012115.1 1611066 1612541 R identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368; putative Mg chelatase homolog complement(1611066..1612541) Nautilia profundicola AmH 7503993 YP_002608109.1 CDS def NC_012115.1 1612505 1613029 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(1612505..1613029) Nautilia profundicola AmH 7505599 YP_002608110.1 CDS NAMH_1730 NC_012115.1 1613029 1614045 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(1613029..1614045) Nautilia profundicola AmH 7504498 YP_002608111.1 CDS clpP NC_012115.1 1614045 1614635 R identified by match to protein family HMM PF00574; match to protein family HMM TIGR00493; ATP-dependent Clp protease, proteolytic subunit ClpP complement(1614045..1614635) Nautilia profundicola AmH 7504716 YP_002608112.1 CDS tig NC_012115.1 1614635 1615921 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(1614635..1615921) Nautilia profundicola AmH 7504651 YP_002608113.1 CDS folE NC_012115.1 1615972 1616550 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 1615972..1616550 Nautilia profundicola AmH 7504040 YP_002608114.1 CDS fliI NC_012115.1 1616615 1617913 D involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1616615..1617913 Nautilia profundicola AmH 7505368 YP_002608115.1 CDS NAMH_1735 NC_012115.1 1617944 1620424 D identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box sensor/ggdef/eal domain protein 1617944..1620424 Nautilia profundicola AmH 7505469 YP_002608116.1 CDS NAMH_1742 NC_012115.1 1621062 1622765 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; transporter 1621062..1622765 Nautilia profundicola AmH 7505179 YP_002608117.1 CDS NAMH_1741 NC_012115.1 1622743 1623840 R identified by glimmer; putative; hypothetical protein complement(1622743..1623840) Nautilia profundicola AmH 7505107 YP_002608118.1 CDS ilvD NC_012115.1 1623929 1625617 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 1623929..1625617 Nautilia profundicola AmH 7505258 YP_002608119.1 CDS NAMH_1744 NC_012115.1 1625833 1627242 D identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1625833..1627242 Nautilia profundicola AmH 7504615 YP_002608120.1 CDS NAMH_1746 NC_012115.1 1627294 1628133 D identified by match to protein family HMM PF07670; transporter gate domain protein 1627294..1628133 Nautilia profundicola AmH 7504681 YP_002608121.1 CDS NAMH_1745 NC_012115.1 1628130 1628633 R putative ATP/GTP-binding protein complement(1628130..1628633) Nautilia profundicola AmH 7505475 YP_002608122.1 CDS NAMH_1747 NC_012115.1 1628810 1629382 R identified by match to protein family HMM PF01871; match to protein family HMM TIGR00296; hypothetical protein complement(1628810..1629382) Nautilia profundicola AmH 7504136 YP_002608123.1 CDS NAMH_1748 NC_012115.1 1629440 1629703 R flagellar basal body protein FlhB complement(1629440..1629703) Nautilia profundicola AmH 7504833 YP_002608124.1 CDS NAMH_1749 NC_012115.1 1629696 1630166 R identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258; 2'-5' RNA ligase complement(1629696..1630166) Nautilia profundicola AmH 7504436 YP_002608125.1 CDS NAMH_1750 NC_012115.1 1630163 1630372 R identified by glimmer; putative; hypothetical protein complement(1630163..1630372) Nautilia profundicola AmH 7505555 YP_002608126.1 CDS leuC NC_012115.1 1630442 1631719 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase large subunit 1630442..1631719 Nautilia profundicola AmH 7505331 YP_002608127.1 CDS NAMH_1752 NC_012115.1 1631827 1632297 R identified by match to protein family HMM PF00581; metallo-beta-lactamase family protein complement(1631827..1632297) Nautilia profundicola AmH 7504391 YP_002608128.1 CDS NAMH_1753 NC_012115.1 1632385 1633344 D identified by match to protein family HMM PF04371; putative agmatine deiminase 1632385..1633344 Nautilia profundicola AmH 7505476 YP_002608129.1 CDS pcm NC_012115.1 1639256 1639864 R catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase complement(1639256..1639864) Nautilia profundicola AmH 7504249 YP_002608130.1 CDS NAMH_1762 NC_012115.1 1639861 1640553 R identified by match to protein family HMM PF00795; hydrolase, carbon-nitrogen family complement(1639861..1640553) Nautilia profundicola AmH 7505083 YP_002608131.1 CDS purB NC_012115.1 1640561 1641892 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1640561..1641892) Nautilia profundicola AmH 7504605 YP_002608132.1 CDS tatB NC_012115.1 1641964 1642290 D identified by match to protein family HMM PF02416; match to protein family HMM TIGR01410; twin arginine-targeting protein translocase TatB 1641964..1642290 Nautilia profundicola AmH 7505404 YP_002608133.1 CDS NAMH_1765 NC_012115.1 1642290 1643174 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; ribosomal large subunit pseudouridine synthase C 1642290..1643174 Nautilia profundicola AmH 7504087 YP_002608134.1 CDS NAMH_1768 NC_012115.1 1643764 1644177 R hypothetical protein complement(1643764..1644177) Nautilia profundicola AmH 7505173 YP_002608135.1 CDS NAMH_1769 NC_012115.1 1644253 1644963 D identified by match to protein family HMM PF00165; AraC family transcriptional regulator 1644253..1644963 Nautilia profundicola AmH 7504511 YP_002608136.1 CDS NAMH_1770 NC_012115.1 1645000 1645398 D identified by match to protein family HMM PF08279; ferric uptake regulation protein 1645000..1645398 Nautilia profundicola AmH 7504991 YP_002608137.1 CDS NAMH_1771 NC_012115.1 1645367 1646170 D identified by match to protein family HMM PF01297; zinc ABC transporter, zinc-binding protein 1645367..1646170 Nautilia profundicola AmH 7503848 YP_002608138.1 CDS NAMH_1772 NC_012115.1 1646167 1646889 D identified by match to protein family HMM PF00005; ABC transporter 1646167..1646889 Nautilia profundicola AmH 7504934 YP_002608139.1 CDS NAMH_1773 NC_012115.1 1646877 1647656 D identified by match to protein family HMM PF00950; ABC transporter permease 1646877..1647656 Nautilia profundicola AmH 7505330 YP_002608140.1 CDS NAMH_1774 NC_012115.1 1647683 1648312 D identified by match to protein family HMM PF00588; tRNA guanosine-2'-O-methyltransferase 1647683..1648312 Nautilia profundicola AmH 7505221 YP_002608141.1 CDS NAMH_1775 NC_012115.1 1648313 1648450 R putative lipoprotein complement(1648313..1648450) Nautilia profundicola AmH 7504031 YP_002608142.1 CDS NAMH_1776 NC_012115.1 1648452 1649609 R hypothetical protein complement(1648452..1649609) Nautilia profundicola AmH 7505442 YP_002608143.1 CDS NAMH_1777 NC_012115.1 1649606 1650301 R identified by match to protein family HMM PF00753; metal-dependent hydrolase of the beta-lactamase superfamily complement(1649606..1650301) Nautilia profundicola AmH 7505472 YP_002608144.1 CDS NAMH_1778 NC_012115.1 1650298 1652067 R hypothetical protein complement(1650298..1652067) Nautilia profundicola AmH 7504412 YP_002608145.1 CDS NAMH_1779 NC_012115.1 1652045 1653151 R putative normocyte-binding protein 1 complement(1652045..1653151) Nautilia profundicola AmH 7505565 YP_002608146.1 CDS NAMH_1780 NC_012115.1 1653148 1654695 R hypothetical protein complement(1653148..1654695) Nautilia profundicola AmH 7504572 YP_002608147.1 CDS NAMH_1781 NC_012115.1 1654685 1655014 R nucleotide pyrophosphohydrolase complement(1654685..1655014) Nautilia profundicola AmH 7505011 YP_002608148.1 CDS NAMH_1782 NC_012115.1 1655011 1655619 R identified by match to protein family HMM PF08241; match to protein family HMM PF08242; SAM-dependent methyltransferase, UbiE/COQ5 family complement(1655011..1655619) Nautilia profundicola AmH 7504617 YP_002608149.1 CDS NAMH_1783 NC_012115.1 1655644 1656321 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR02495; anaerobic ribonucleoside-triphosphate reductase activating protein complement(1655644..1656321) Nautilia profundicola AmH 7505567 YP_002608150.1 CDS NAMH_1784 NC_012115.1 1656315 1656482 R an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; oxygen-sensitive ribonucleoside-triphosphate reductase complement(1656315..1656482) Nautilia profundicola AmH 7505038 YP_002608151.1 CDS nrdD NC_012115.1 1656502 1658613 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(1656502..1658613) Nautilia profundicola AmH 7505229 YP_002608152.1 CDS pyrC NC_012115.1 1658762 1659736 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(1658762..1659736) Nautilia profundicola AmH 7505320 YP_002608153.1 CDS NAMH_1787 NC_012115.1 1659791 1660039 R hypothetical protein complement(1659791..1660039) Nautilia profundicola AmH 7504282 YP_002608154.1 CDS NAMH_1788 NC_012115.1 1660114 1661943 R identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649; metallo-beta-lactamase family protein complement(1660114..1661943) Nautilia profundicola AmH 7503956 YP_002608155.1 CDS NAMH_1789 NC_012115.1 1661964 1662623 R identified by match to protein family HMM PF00398; dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase) complement(1661964..1662623) Nautilia profundicola AmH 7504199 YP_002608156.1 CDS hisF NC_012115.1 1662800 1663564 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 1662800..1663564 Nautilia profundicola AmH 7504853 YP_002608157.1 CDS NAMH_1791 NC_012115.1 1663582 1664013 D identified by glimmer; putative; hypothetical protein 1663582..1664013 Nautilia profundicola AmH 7504650 YP_002608158.1 CDS NAMH_1792 NC_012115.1 1664039 1664599 D purine nucleoside phosphorylase 1664039..1664599 Nautilia profundicola AmH 7504704 YP_002608159.1 CDS NAMH_1793 NC_012115.1 1664592 1665656 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1664592..1665656 Nautilia profundicola AmH 7504743 YP_002608160.1 CDS NAMH_1795 NC_012115.1 1665666 1666001 D hypothetical protein 1665666..1666001 Nautilia profundicola AmH 7504221 YP_002608161.1 CDS NAMH_1794 NC_012115.1 1665998 1666810 R identified by match to protein family HMM PF09312; putative periplasmic protein complement(1665998..1666810) Nautilia profundicola AmH 7504654 YP_002608162.1 CDS NAMH_1796 NC_012115.1 1666820 1667236 R identified by match to protein family HMM PF01047; transcriptional regulator, MarR family complement(1666820..1667236) Nautilia profundicola AmH 7505014 YP_002608163.1 CDS NAMH_1797 NC_012115.1 1667347 1667865 R identified by match to protein family HMM PF00578; match to protein family HMM PF08534; thiol peroxidase complement(1667347..1667865) Nautilia profundicola AmH 7504657 YP_002608164.1 CDS dapF NC_012115.1 1667949 1668677 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(1667949..1668677) Nautilia profundicola AmH 7505363 YP_002608165.1 CDS NAMH_1799 NC_012115.1 1668658 1670718 R identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase/phosphodiesterase complement(1668658..1670718) Nautilia profundicola AmH 7503963 YP_002608166.1 CDS kdsA NC_012115.1 1670809 1671594 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1670809..1671594 Nautilia profundicola AmH 7504372 YP_002608167.1 CDS ribH NC_012115.1 1671604 1672068 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1671604..1672068 Nautilia profundicola AmH 7504343 YP_002608168.1 CDS nusB NC_012115.1 1672068 1672478 D identified by match to protein family HMM PF01029; match to protein family HMM TIGR01951; transcription antitermination factor NusB 1672068..1672478 Nautilia profundicola AmH 7504488 YP_002608169.1 CDS NAMH_1803 NC_012115.1 1672471 1674822 D identified by match to protein family HMM PF00563; match to protein family HMM PF00990; ggdef family protein 1672471..1674822 Nautilia profundicola AmH 7503968 YP_002608170.1 CDS NAMH_1804 NC_012115.1 1674838 1675308 R identified by glimmer; putative; hypothetical protein complement(1674838..1675308) Nautilia profundicola AmH 7504115 YP_002608171.1 CDS NAMH_1805 NC_012115.1 1675344 1675928 R identified by match to protein family HMM PF03458; membrane protein complement(1675344..1675928) Nautilia profundicola AmH 7505147 YP_002608172.1 CDS ruvC NC_012115.1 1675922 1676386 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(1675922..1676386) Nautilia profundicola AmH 7504044 NAMH_0073 tRNA NAMH_0073 NC_012115.1 58961 59036 R tRNA-Ala complement(58961..59036) Nautilia profundicola AmH 7504625 NAMH_0086 tRNA NAMH_0086 NC_012115.1 71858 71947 R tRNA-Ser complement(71858..71947) Nautilia profundicola AmH 7504035 NAMH_0087 tRNA NAMH_0087 NC_012115.1 71982 72068 R tRNA-Leu complement(71982..72068) Nautilia profundicola AmH 7505181 NAMH_0088 tRNA NAMH_0088 NC_012115.1 72115 72189 R tRNA-Cys complement(72115..72189) Nautilia profundicola AmH 7505174 NAMH_0089 tRNA NAMH_0089 NC_012115.1 72216 72292 R tRNA-Gly complement(72216..72292) Nautilia profundicola AmH 7505192 NAMH_0158 tRNA NAMH_0158 NC_012115.1 141366 141442 D tRNA-Ile 141366..141442 Nautilia profundicola AmH 7504248 NAMH_0159 tRNA NAMH_0159 NC_012115.1 141456 141531 D tRNA-Ala 141456..141531 Nautilia profundicola AmH 7505182 NAMH_0166 tRNA NAMH_0166 NC_012115.1 146586 146662 D tRNA-Thr 146586..146662 Nautilia profundicola AmH 7505496 NAMH_0167 tRNA NAMH_0167 NC_012115.1 146691 146776 D tRNA-Tyr 146691..146776 Nautilia profundicola AmH 7505169 NAMH_0168 tRNA NAMH_0168 NC_012115.1 146781 146857 D tRNA-Gly 146781..146857 Nautilia profundicola AmH 7505177 NAMH_0169 tRNA NAMH_0169 NC_012115.1 146963 147037 D tRNA-Thr 146963..147037 Nautilia profundicola AmH 7505188 NAMH_0172 tRNA NAMH_0172 NC_012115.1 148535 148611 D tRNA-Gly 148535..148611 Nautilia profundicola AmH 7505573 NAMH_0173 tRNA NAMH_0173 NC_012115.1 148617 148692 D tRNA-Trp 148617..148692 Nautilia profundicola AmH 7505178 NAMH_0286 tRNA NAMH_0286 NC_012115.1 248416 248491 R tRNA-Phe complement(248416..248491) Nautilia profundicola AmH 7504639 NAMH_0416 tRNA NAMH_0416 NC_012115.1 367519 367609 D tRNA-Ser 367519..367609 Nautilia profundicola AmH 7503872 NAMH_0429 tRNA NAMH_0429 NC_012115.1 375813 375889 R tRNA-Asp complement(375813..375889) Nautilia profundicola AmH 7504177 NAMH_0430 tRNA NAMH_0430 NC_012115.1 375898 375973 R tRNA-Val complement(375898..375973) Nautilia profundicola AmH 7505197 NAMH_0431 tRNA NAMH_0431 NC_012115.1 375991 376066 R tRNA-Glu complement(375991..376066) Nautilia profundicola AmH 7505161 NAMH_0432 tRNA NAMH_0432 NC_012115.1 376070 376145 R tRNA-Lys complement(376070..376145) Nautilia profundicola AmH 7505195 NAMH_0534 tRNA NAMH_0534 NC_012115.1 475614 475690 D tRNA-Met 475614..475690 Nautilia profundicola AmH 7504866 NAMH_0535 tRNA NAMH_0535 NC_012115.1 475696 475771 D tRNA-Phe 475696..475771 Nautilia profundicola AmH 7505200 NAMH_0638 tRNA NAMH_0638 NC_012115.1 567421 567496 D tRNA-Lys 567421..567496 Nautilia profundicola AmH 7504602 NAMH_0639 tRNA NAMH_0639 NC_012115.1 567503 567577 D tRNA-Glu 567503..567577 Nautilia profundicola AmH 7505193 NAMH_0640 tRNA NAMH_0640 NC_012115.1 567614 567689 D tRNA-Val 567614..567689 Nautilia profundicola AmH 7505162 NAMH_0641 tRNA NAMH_0641 NC_012115.1 567707 567783 D tRNA-Asp 567707..567783 Nautilia profundicola AmH 7505158 NAMH_0717 tRNA NAMH_0717 NC_012115.1 643654 643730 D tRNA-Ile 643654..643730 Nautilia profundicola AmH 7504252 NAMH_0718 tRNA NAMH_0718 NC_012115.1 643744 643819 D tRNA-Ala 643744..643819 Nautilia profundicola AmH 7505189 NAMH_0978 tRNA NAMH_0978 NC_012115.1 896344 896420 D tRNA-Arg 896344..896420 Nautilia profundicola AmH 7504757 NAMH_1033 tRNA NAMH_1033 NC_012115.1 949282 949368 D tRNA-Leu 949282..949368 Nautilia profundicola AmH 7505113 NAMH_1095 tRNA NAMH_1095 NC_012115.1 1013244 1013329 D tRNA-Leu 1013244..1013329 Nautilia profundicola AmH 7504532 NAMH_1125 tRNA NAMH_1125 NC_012115.1 1041518 1041594 D tRNA-Arg 1041518..1041594 Nautilia profundicola AmH 7504805 NAMH_1807 tRNA NAMH_1807 NC_012115.1 1092328 1092404 R tRNA-Met complement(1092328..1092404) Nautilia profundicola AmH 9679935 NAMH_1808 tRNA NAMH_1808 NC_012115.1 1092412 1092486 R tRNA-Gln complement(1092412..1092486) Nautilia profundicola AmH 9679936 NAMH_1391 tRNA NAMH_1391 NC_012115.1 1289418 1289494 R tRNA-Val complement(1289418..1289494) Nautilia profundicola AmH 7504903 NAMH_1488 tRNA NAMH_1488 NC_012115.1 1395595 1395684 D tRNA-Ser 1395595..1395684 Nautilia profundicola AmH 7503964 NAMH_1491 tRNA NAMH_1491 NC_012115.1 1397745 1397821 R tRNA-Met complement(1397745..1397821) Nautilia profundicola AmH 7504053 NAMH_1578 tRNA NAMH_1578 NC_012115.1 1480854 1480929 R tRNA-Asn complement(1480854..1480929) Nautilia profundicola AmH 7504573 NAMH_1617 tRNA NAMH_1617 NC_012115.1 1521732 1521807 R tRNA-Ala complement(1521732..1521807) Nautilia profundicola AmH 7504990 NAMH_1618 tRNA NAMH_1618 NC_012115.1 1521821 1521897 R tRNA-Ile complement(1521821..1521897) Nautilia profundicola AmH 7505172 NAMH_1736 tRNA NAMH_1736 NC_012115.1 1620469 1620546 D tRNA-Pro 1620469..1620546 Nautilia profundicola AmH 7505012 NAMH_1737 tRNA NAMH_1737 NC_012115.1 1620591 1620667 D tRNA-His 1620591..1620667 Nautilia profundicola AmH 7505170 NAMH_1738 tRNA NAMH_1738 NC_012115.1 1620685 1620761 D tRNA-Arg 1620685..1620761 Nautilia profundicola AmH 7505199 NAMH_1739 tRNA NAMH_1739 NC_012115.1 1620788 1620864 D tRNA-Arg 1620788..1620864 Nautilia profundicola AmH 7505157 NAMH_1740 tRNA NAMH_1740 NC_012115.1 1620879 1620963 D tRNA-Leu 1620879..1620963 Nautilia profundicola AmH 7505155 NAMH_1758 tRNA NAMH_1758 NC_012115.1 1636954 1637029 R tRNA-Ala complement(1636954..1637029) Nautilia profundicola AmH 7504242 NAMH_1759 tRNA NAMH_1759 NC_012115.1 1637043 1637119 R tRNA-Ile complement(1637043..1637119) Nautilia profundicola AmH 7505196 NAMH_1766 tRNA NAMH_1766 NC_012115.1 1643535 1643611 R tRNA-Thr complement(1643535..1643611) Nautilia profundicola AmH 7504121 NAMH_1767 tRNA NAMH_1767 NC_012115.1 1643651 1643726 R tRNA-Asn complement(1643651..1643726) Nautilia profundicola AmH 7505180 NAMH_0157 rRNA rrsA NC_012115.1 139776 141273 D 16S ribosomal RNA 139776..141273 Nautilia profundicola AmH 7505483 NAMH_0162 rRNA rrlA NC_012115.1 141659 144562 D 23S ribosomal RNA 141659..144562 Nautilia profundicola AmH 7505159 NAMH_0163 rRNA rrfA NC_012115.1 144623 144734 D 5S ribosomal RNA 144623..144734 Nautilia profundicola AmH 7504250 NAMH_0716 rRNA rrsB NC_012115.1 642064 643561 D 16S ribosomal RNA 642064..643561 Nautilia profundicola AmH 7503915 NAMH_0721 rRNA rrlB NC_012115.1 643947 646850 D 23S ribosomal RNA 643947..646850 Nautilia profundicola AmH 7505190 NAMH_0722 rRNA rrfB NC_012115.1 646911 647022 D 5S ribosomal RNA 646911..647022 Nautilia profundicola AmH 7504247 NAMH_1613 rRNA rrfC NC_012115.1 1518529 1518640 R 5S ribosomal RNA complement(1518529..1518640) Nautilia profundicola AmH 7505411 NAMH_1614 rRNA rrlC NC_012115.1 1518701 1521604 R 23S ribosomal RNA complement(1518701..1521604) Nautilia profundicola AmH 7504244 NAMH_1619 rRNA rrsC NC_012115.1 1521990 1523487 R 16S ribosomal RNA complement(1521990..1523487) Nautilia profundicola AmH 7505184 NAMH_1754 rRNA rrfD NC_012115.1 1633751 1633862 R 5S ribosomal RNA complement(1633751..1633862) Nautilia profundicola AmH 7504084 NAMH_1755 rRNA rrlD NC_012115.1 1633923 1636826 R 23S ribosomal RNA complement(1633923..1636826) Nautilia profundicola AmH 7504243 NAMH_1760 rRNA rrsD NC_012115.1 1637212 1638709 R 16S ribosomal RNA complement(1637212..1638709) Nautilia profundicola AmH 7505194