-- dump date   	20140619_162948
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_207186.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_207187.1	binds the polymerase to DNA and acts as a sliding clamp
YP_207188.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_207189.1	Best Blastp Hit: pir||D81974 probable periplasmic protein NMA0556 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379295|emb|CAB83849.1| (AL162753) periplasmic protein [Neisseria meningitidis]
YP_207190.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_207191.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); COG0338 Site-specific DNA methylase dam
YP_207192.1	Best Blastp Hit: sp|P09358|MT22_STRPN modification methylase DpnII 2 (adenine-specific methyltransferase DpnII 2) (M.DPNII 2) >gi|6978344|gb|AAA88581.2| (M14339) DNA adenine methyltransferase [Streptococcus pneumoniae]; COG0863 Adenine-specific DNA methylase
YP_207193.1	Best Blastp Hit: sp|P54298|LUXM_VIBHA LUXM protein >gi|487037|pir||S37349 luxM protein - Vibrio harveyi >gi|295433|gb|AAC36807.1| (L13940) Lux M [Vibrio harveyi]
YP_207194.1	Best Blastp Hit: gb|AAF42226.1| (AE002539) hypothetical protein [Neisseria meningitidis MC58]
YP_207195.1	Best Blastp Hit: pir||B81975 probable DNA-binding protein NMA0564 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379301|emb|CAB83856.1| (AL162753) DNA-binding protein [Neisseria meningitidis]
YP_207196.1	Best Blastp Hit: emb|CAB83858.1| (AL162753) hypothetical protein NMA0567 [Neisseria meningitidis]
YP_207197.1	SecG; Best Blastp Hit: pir||F81031 protein-export membrane protein SecG NMB1888 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227147|gb|AAF42222.1| (AE002538) protein-export membrane protein SecG [Neisseria meningitidis MC58] >gi|7379305|emb|CAB83860.1| (AL162753)  protein-export integral membrane protein [Neisseria meningitidis]
YP_207198.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_207199.1	Best Blastp Hit: pir||H81975 hypothetical protein NMA0571 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379307|emb|CAB83862.1| (AL162753) hypothetical protein NMA0571 [Neisseria meningitidis]; COG1956 GAF domain-containing proteins
YP_207200.1	PimT; Best Blastp Hit: gb|AAF42219.1| (AE002538) protein-L-isoaspartate O-methyltransferase [Neisseria meningitidis MC58]
YP_207201.1	Best Blastp Hit: emb|CAB83864.1| (AL162753) hypothetical protein NMA0573 [Neisseria meningitidis]
YP_207202.1	Best Blastp Hit: pir||D81976 probable ferric siderophore receptor protein NMA0575 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379311|emb|CAB83866.1| (AL162753)  ferric siderophore receptor protein [Neisseria meningitidis]; COG1629 Outer membrane receptor proteins, mostly Fe
YP_207203.1	Best Blastp Hit: pir||E81976 hypothetical protein NMA0576 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379312|emb|CAB83867.1| (AL162753) hypothetical protein NMA0576 [Neisseria meningitidis]; COG0662 Mannose-6-phosphate isomerase
YP_207204.1	Best Blastp Hit: gb|AAF42214.1| (AE002538) ABC transporter periplasmic solute-binding protein, [Neisseria meningitidis MC58]; COG0614 Ferrichrome-binding periplasmic proteins
YP_207206.1	Best Blastp Hit: emb|CAB83869.1| (AL162753) araC-family transcriptional regulator [Neisseria meningitidis]; COG2207 AraC-type DNA-binding domain-containing
YP_207207.1	Best Blastp Hit: emb|CAB83870.1| (AL162753)  prolyl endopeptidase [Neisseria meningitidis]; COG1505 Serine proteases of the peptidase
YP_207208.1	catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis
YP_207209.1	Best Blastp Hit: pir||A81033 hypothetical protein NMB1875 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227133|gb|AAF42209.1| (AE002537) hypothetical protein [Neisseria meningitidis MC58]
YP_207210.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_207211.1	Best Blastp Hit: pir||G81032 DNA polymerase, bacteriophage-type, probable NMB1873 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227131|gb|AAF42207.1| (AE002537) DNA polymerase, bacteriophage-type,  [Neisseria meningitidis MC58]; COG1573 Uracil-DNA glycosylase
YP_207212.1	Best Blastp Hit: emb|CAB83875.1| (AL162753) acetyltransferase [Neisseria meningitidis]; COG0456 Acetyltransferases
YP_207213.1	Best Blastp Hit: pir||F81977 hypothetical protein NMA0585 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379321|emb|CAB83876.1| (AL162753) hypothetical protein NMA0585 [Neisseria meningitidis]; COG1214 Inactive homologs of metal-dependent
YP_207214.1	Best Blastp Hit: pir||D81032 hypothetical protein NMB1870 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227128|gb|AAF42204.1| (AE002537) hypothetical protein [Neisseria meningitidis MC58]
YP_207215.1	class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis
YP_207216.1	XerC; Best Blastp Hit: pir||A81978 probable integrase/recombinase NMA0588 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379324|emb|CAB83879.1| (AL162753) integrase/recombinase [Neisseria meningitidis]; COG0582 Integrase
YP_207217.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_207218.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_207219.1	Best Blastp Hit: pir||D81978 hypothetical protein NMA0591 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379327|emb|CAB83882.1| (AL162753) hypothetical protein NMA0591 [Neisseria meningitidis]
YP_207220.1	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway
YP_207221.1	3'-5' exoribonuclease specific for small oligoribonuclotides
YP_207222.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_207223.1	Best Blastp Hit: pir||F81033 acetyl-CoA carboxylase, biotin carboxylase NMB1861 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227118|gb|AAF42195.1| (AE002536) acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis MC58]; COG0439 Biotin carboxylase
YP_207224.1	composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_207226.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_207227.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_207228.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON)
YP_207229.1	Best Blastp Hit: gb|AAC78450.1| (AF029362) similar to E. coli ORF, encoded by GenBank Accession Number X97282; and to H. influenzae protein HI0925, encoded by GenBank Accession Number U32774; and to H. influenzae protein HI1162, encoded by GenBank Accession Number U32796 [Neisseria g>
YP_207230.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_207231.1	Best Blastp Hit: gb|AAD38303.1|AF036242_3 (AF036242) unknown [Neisseria meningitidis]
YP_207232.1	PilC1; Best Blastp Hit: possibly phase variable - 13G residue homopolymer repeat in the coding sequence (ON)
YP_207233.1	Mrp; Best Blastp Hit: pir||G81980 hypothetical protein NMA0611 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379346|emb|CAB83901.1| (AL162753) hypothetical protein NMA0611 [Neisseria meningitidis]; COG0489 ATPases involved in chromosome partitioning
YP_207234.1	Best Blastp Hit: emb|CAB83902.1| (AL162753) periplasmic thioredoxin [Neisseria meningitidis]; COG0526 Thiol-disulfide isomerase and thioredoxins
YP_207235.1	Best Blastp Hit: gb|AAF42178.1| (AE002534) transcriptional regulator, MarR family [Neisseria meningitidis MC58] >gi|7379348|emb|CAB83903.1| (AL162753) marR-family transcriptional regulator [Neisseria meningitidis]; COG1846 Transcriptional regulators, MarR/EmrR
YP_207236.1	Best Blastp Hit: pir||B81981 probable 4-hydroxyphenylacetate 3-monooxygenase (EC 1.14.13.3) small chain NMA0614 [similarity] - Neisseria meningitidis (group A strain Z2491) >gi|7379349|emb|CAB83904.1| (AL162753)  NADH:FMN oxidoreductase [Neisseria meningitidis]; COG1853 Conserved protein/domain typically
YP_207237.1	Best Blastp Hit: gb|AAF42176.1| (AE002534) mannose-1-phosphate guanyltransferase-related protein [Neisseria meningitidis MC58]; COG1208 Nucleoside-diphosphate-sugar
YP_207238.1	catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate
YP_207239.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_207240.1	Best Blastp Hit: gb|AAF42172.1| (AE002533) hypothetical protein [Neisseria meningitidis MC58]
YP_207241.1	Best Blastp Hit: gb|AAF42171.1| (AE002533) lipopolysaccharide biosynthesis protein WbpC,  [Neisseria meningitidis MC58]; COG1835 Predicted acyltransferases
YP_207242.1	TyrRS; Best Blastp Hit: pir||A81037 tyrosyl-tRNA synthetase NMB1835 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227090|gb|AAF42170.1| (AE002533) tyrosyl-tRNA synthetase [Neisseria meningitidis MC58]; COG0162 Tyrosyl-tRNA synthetase
YP_207243.1	catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities
YP_207244.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme
YP_207245.1	OpaB; Best Blastp Hit: phase variable - 10 tandem repeats of CTCTT in the coding sequence (ON)
YP_207246.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_207247.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_207248.1	Best Blastp Hit: gb|AAF42165.1| (AE002532) phosphoglycolate phosphatase,  [Neisseria meningitidis MC58]; COG0546 Predicted phosphatases
YP_207249.1	Best Blastp Hit: gb|AAF42163.1| (AE002532) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_207250.1	Best Blastp Hit: gb|AAF42163.1| (AE002532) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_207251.1	Best Blastp Hit: pir||H81037 DNA polymerase III, alpha chain NMB1827 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227081|gb|AAF42162.1| (AE002532) DNA polymerase III, alpha subunit [Neisseria meningitidis MC58]; COG0587 DNA-dependent DNA polymerase III alpha
YP_207252.1	Best Blastp Hit: emb|CAB83923.1| (AL162753) hypothetical protein NMA0633 [Neisseria meningitidis]
YP_207253.1	Best Blastp Hit: gb|AAF42160.1| (AE002532) hypothetical protein [Neisseria meningitidis MC58]
YP_207254.1	Best Blastp Hit: pir||A81040 conserved hypothetical protein NMB1824 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227077|gb|AAF42159.1| (AE002531) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0613 Predicted metal-dependent phosphoesterases
YP_207255.1	transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis
YP_207256.1	PglD; Best Blastp Hit: pir||G81039 pilin glycosylation protein PglD NMB1822 [imported] - Neisseria meningitidis (group B strain MD58) >gi|3299891|gb|AAC25981.1| (AF014804) PglD [Neisseria meningitidis] >gi|7227075|gb|AAF42157.1| (AE002531) pilin glycosylation protein PglD [Neisseria meningitidis MC58]; COG1086 Predicted nucleoside-diphosphate sugar
YP_207257.1	Best Blastp Hit: pir||H81983 pilin glycosylation protein NMA0638 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379371|emb|CAB83928.1| (AL162753) pilin glycosylation protein [Neisseria meningitidis]; COG0399 Predicted pyridoxal phosphate-dependent; protein PglC
YP_207258.1	Best Blastp Hit: gb|AAC25979.1| (AF014804) PglB [Neisseria meningitidis] >gi|7227073|gb|AAF42155.1| (AE002531) pilin glycosylation protein PglB [Neisseria meningitidis MC58]; COG2148 Sugar transferases involved in
YP_207259.1	Best Blastp Hit: possibly phase variable - 10C residue homopolymer repeat in the coding sequence (ON); COG0438 Glycosyltransferases I
YP_207260.1	Best Blastp Hit: gb|AAF84279.1|AE003977_2 (AE003977) conserved hypothetical protein [Xylella fastidiosa]; COG0438 Glycosyltransferases I
YP_207261.1	Best Blastp Hit: pir||C81984 probable lipopolysaccharide biosynthesis translocase NMA0643 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379374|emb|CAB83932.1| (AL162753)  lipopolysaccharide biosynthesis translocase [Neisseria meningitidis]; COG2244 Membrane protein involved in the export of
YP_207262.1	Best Blastp Hit: pir||D81984 riboflavin bifunctional biosynthesis protein ribD NMA0644 [similarity] - Neisseria meningitidis (group A strain Z2491) >gi|7379375|emb|CAB83933.1| (AL162753) diaminohydroxyphosphoribosylaminopyrimidine deaminase/phosphoribosylamino)uracil reductase [Neisseria meningitidis]; COG0117 Pyrimidine deaminase, riboflavin
YP_207263.1	Best Blastp Hit: pir||A81039 conserved hypothetical protein NMB1816 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227069|gb|AAF42151.1| (AE002531) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1327 Uncharacterized BCR
YP_207264.1	Best Blastp Hit: pir||H81038 conserved hypothetical protein NMB1815 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227068|gb|AAF42150.1| (AE002531) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0121 Predicted glutamine amidotransferase
YP_207265.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis
YP_207266.1	catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_207267.1	Best Blastp Hit: pir||S70838 pilQ protein - Neisseria gonorrhoeae >gi|1173875|gb|AAC43603.1| (U40596) PilQ [Neisseria gonorrhoeae] >gi|1589217|prf||2210365A pilQ gene [Neisseria gonorrhoeae]; COG1450 General secretion pathway protein D
YP_207268.1	Best Blastp Hit: pir||C81041 pilus assembly protein NMA0651 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227064|gb|AAF42147.1| (AE002530) pilP protein [Neisseria meningitidis MC58] >gi|7379381|emb|CAB83939.1| (AL162753) pilus assembly protein [Neisseria meningitidis]; pilin assembly protein
YP_207269.1	Best Blastp Hit: gb|AAB52533.1| (U72876) PilO [Neisseria gonorrhoeae]
YP_207270.1	Best Blastp Hit: pir||D81985 probable pilus assembly protein NMA0653 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379383|emb|CAB83941.1| (AL162753)  pilus assembly protein [Neisseria meningitidis]
YP_207271.1	Best Blastp Hit: gb|AAB52535.1| (U72876) PilM [Neisseria gonorrhoeae]; COG0849 Predicted ATPases of the HSP70 class
YP_207272.1	Best Blastp Hit: gb|AAB52536.1| (U72876) penicillin-binding protein 1 [Neisseria gonorrhoeae]; COG0744 Membrane carboxypeptidase; protein PonA
YP_207273.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_207274.1	Best Blastp Hit: pir||F81040 cytochrome C4 NMB1805 [imported] - Neisseria meningitidis  (group B strain MD58, group A strain Z2491) >gi|7227059|gb|AAF42142.1| (AE002530) cytochrome c4 [Neisseria meningitidis MC58] >gi|7379387|emb|CAB83945.1| (AL162753)  cytochrome C [Neisseria meningitidis]
YP_207275.1	Best Blastp Hit: pir||E81040 cytochrome c-type biogenesis protein, probable NMB1804 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227058|gb|AAF42141.1| (AE002530) cytochrome c-type biogenesis protein,  [Neisseria meningitidis MC58]; COG1333 ResB protein required for cytochrome c
YP_207276.1	Best Blastp Hit: emb|CAB83947.1| (AL162753) membrane protein [Neisseria meningitidis]; COG0755 Cytochrome c biogenesis factors, CcmC
YP_207277.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_207278.1	Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA
YP_207279.2	methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_207280.1	Best Blastp Hit: gb|AAC24040.1| (AF071224) penicillin binding protein 3 [Neisseria gonorrhoeae]; COG2027 D-alanyl-D-alanine carboxypeptidase
YP_207281.1	Best Blastp Hit: pir||B81042 conserved hypothetical protein NMB1796 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227050|gb|AAF42134.1| (AE002529) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0431 Predicted flavoprotein
YP_207283.1	Best Blastp Hit: gb|AAF42132.1| (AE002529) citrate transporter [Neisseria meningitidis MC58] >gi|7379397|emb|CAB83955.1| (AL162753)  transmembrane transport protein [Neisseria meningitidis]
YP_207284.1	Best Blastp Hit: gb|AAG24266.1|AF139612_3 (AF139612) BasS [Neisseria gonorrhoeae]; COG0642 Sensory transduction histidine kinases
YP_207285.1	Best Blastp Hit: emb|CAB83959.1| (AL162753) hypothetical protein NMA0672 [Neisseria meningitidis]; COG1530 Ribonucleases G and E
YP_207286.1	Best Blastp Hit: gb|AAF42129.1| (AE002529) glutaredoxin 3 [Neisseria meningitidis MC58]; COG0695 Glutaredoxin and related proteins
YP_207287.1	Best Blastp Hit: sp|P15041|YZSB_ECOLI very hypothetical 17.7 kD protein in SecB region>gi|76221|pir||QQEC17 hypothetical 17.7K protein (secB region) - Escherichia coli >gi|1128972|gb|AAA83908.1| (M24489) ORF; [Escherichia coli]
YP_207288.1	molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA
YP_207289.1	catalyzes branch migration in Holliday junction intermediates
YP_207290.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate
YP_207291.1	Best Blastp Hit: emb|CAB83964.1| (AL162753) hypothetical protein NMA0677 [Neisseria meningitidis]
YP_207293.1	Best Blastp Hit: gb|AAF42125.1| (AE002528) hypothetical protein [Neisseria meningitidis MC58]
YP_207294.1	Best Blastp Hit: pir||F81988 hypothetical protein NMA0681 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379409|emb|CAB83968.1| (AL162753) hypothetical protein NMA0681 [Neisseria meningitidis]
YP_207295.1	Best Blastp Hit: gb|AAF61809.1| (AF129811) unknown [Moraxella catarrhalis]; COG1566 Multidrug resistance efflux pump
YP_207296.1	Best Blastp Hit: sp|O24528|MT1_FESRU metallothionein-like protein 1 >gi|2317922|gb|AAB70464.1| (U96646) mcMT1 [Festuca rubra]
YP_207297.1	Best Blastp Hit: pir||B70183 conserved hypothetical protein BB0667 - Lyme disease spirochete >gi|2688586|gb|AAC67004.1| (AE001167) conserved hypothetical protein [Borrelia burgdorferi]
YP_207298.1	RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; this protein contains a C-terminal extension of unknown function
YP_207299.1	Best Blastp Hit: gb|AAC33457.1| (AF067083) Trp repressor binding protein [Vitreoscilla sp.]
YP_207300.1	Best Blastp Hit: pir||C81913 hypothetical protein NMA0702 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379427|emb|CAB83989.1| (AL162754) hypothetical protein NMA0702 [Neisseria meningitidis]; COG0603 Predicted ATPase (PP-loop superfamily); aluminum resistance protein
YP_207301.1	Best Blastp Hit: pir||D81913 hypothetical protein NMA0703 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379428|emb|CAB83990.1| (AL162754) hypothetical protein NMA0703 [Neisseria meningitidis]
YP_207302.1	Best Blastp Hit: pir||E81913 hypothetical protein NMA0704 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379429|emb|CAB83991.1| (AL162754) hypothetical protein NMA0704 [Neisseria meningitidis]; COG0720 6-pyruvoyl-tetrahydropterin synthase
YP_207303.1	Best Blastp Hit: emb|CAB83993.1| (AL162754) hypothetical protein NMA0707 [Neisseria meningitidis]; COG0602 Organic radical activating enzymes
YP_207304.1	Best Blastp Hit: dbj|BAA98955.1| (AP002547) CT631 hypothetical protein [Chlamydophila pneumoniae]
YP_207305.1	hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides
YP_207306.1	Best Blastp Hit: gb|AAF40961.1| (AE002408) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1757 Na+/H+ antiporter NhaC
YP_207308.1	Best Blastp Hit: pir||B81914 probable periplasmic serine proteinase (EC 3.4.21.-) NMA0710 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379434|emb|CAB83996.1| (AL162754)  periplasmic serine protease [Neisseria meningitidis]; COG0265 Trypsin-like serine proteases, typically
YP_207309.1	Best Blastp Hit: pir||D81187 endonuclease III NMB0533 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225758|gb|AAF40962.1| (AE002409) endonuclease III [Neisseria meningitidis MC58]; COG0177 Predicted EndoIII-related endonuclease
YP_207310.1	Best Blastp Hit: pir||D81914 probable membrane protein NMA0712 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379436|emb|CAB83998.1| (AL162754) membrane protein [Neisseria meningitidis]; COG1238 Uncharacterized membrane protein
YP_207312.1	Best Blastp Hit: pir||F81187 glucose/galactose transporter NMB0535 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225760|gb|AAF40964.1| (AE002409) glucose/galactose transporter [Neisseria meningitidis MC58]; COG0738 Fucose permease
YP_207313.1	Best Blastp Hit: pir||F81914 probable transmembrane transport protein NMA0715 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379438|emb|CAB84000.1| (AL162754)  transmembrane transport protein [Neisseria meningitidis]; COG1757 Na+/H+ antiporter NhaC
YP_207314.1	Best Blastp Hit: pir||G81914 hypothetical protein NMA0716 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379439|emb|CAB84001.1| (AL162754) hypothetical protein NMA0716 [Neisseria meningitidis]; COG1253 Uncharacterized CBS domain-containing
YP_207315.1	Best Blastp Hit: emb|CAB84002.1| (AL162754) hypothetical protein NMA0717 [Neisseria meningitidis]; COG0319 Uncharacterized BCR ( metal-binding
YP_207316.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_207317.1	Best Blastp Hit: emb|CAB84865.1| (AL162756) hypothetical protein [Neisseria meningitidis]; COG0644 Dehydrogenases (flavoproteins)
YP_207319.1	Best Blastp Hit: gb|AAF41783.1| (AE002491) ATP-dependent RNA helicase,  [Neisseria meningitidis MC58]; COG0513 Superfamily II DNA and RNA helicases
YP_207321.1	Best Blastp Hit: pir||G81085 nifR3 protein NMB1421 [imported] - Neisseria meningitidis  (group B strain MD58) >gi|7226660|gb|AAF41782.1| (AE002491) nifR3 protein [Neisseria meningitidis MC58]; COG0042 Predicted TIM-barrel enzymes, possibly
YP_207322.1	Best Blastp Hit: gb|AAF41781.1| (AE002491) factor-for-inversion stimulation protein Fis,  [Neisseria meningitidis MC58] >gi|7380274|emb|CAB84860.1| (AL162756) factor-for-inversion-stimulation protein [Neisseria meningitidis]
YP_207323.2	endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity
YP_207324.1	Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA
YP_207325.1	Best Blastp Hit: emb|CAB84857.1| (AL162756) hypothetical DNA-binding protein [Neisseria meningitidis]
YP_207326.1	Best Blastp Hit: pir||H81856 hypothetical protein NMA1628 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380270|emb|CAB84856.1| (AL162756) hypothetical protein [Neisseria meningitidis]
YP_207327.1	Best Blastp Hit: pir||F81086 aminopeptidase N NMB1416 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226654|gb|AAF41777.1| (AE002490) aminopeptidase N [Neisseria meningitidis MC58]; COG0308 Aminopeptidase N
YP_207328.1	Best Blastp Hit: emb|CAB84331.1| (AL162755) hypothetical protein NMA1067 [Neisseria meningitidis]
YP_207329.1	Best Blastp Hit: emb|CAB84332.1| (AL162755) hypothetical protein NMA1068 [Neisseria meningitidis]
YP_207330.1	Best Blastp Hit: gb|AAF41269.1| (AE002438) hypothetical protein [Neisseria meningitidis MC58]
YP_207331.1	Best Blastp Hit: pir||F81150 hypothetical protein NMB0859 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226095|gb|AAF41270.1| (AE002438) hypothetical protein [Neisseria meningitidis MC58]
YP_207332.1	Best Blastp Hit: emb|CAB84335.1| (AL162755) hypothetical protein NMA1072 [Neisseria meningitidis]
YP_207333.1	Best Blastp Hit: gb|AAF41272.1| (AE002438) hypothetical protein [Neisseria meningitidis MC58] >gi|7379768|emb|CAB84336.1| (AL162755) hypothetical protein NMA1073 [Neisseria meningitidis]
YP_207334.1	Best Blastp Hit: pir||A81874 probable periplasmic protein NMA1084 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379779|emb|CAB84347.1| (AL162755) periplasmic protein [Neisseria meningitidis]
YP_207336.1	Best Blastp Hit: gb|AAG30300.1| (AY010757) periplasmic binding protein MntC [Neisseria gonorrhoeae]; COG0803 Zn-binding (lipo) protein of the ABC-type Zn
YP_207337.1	Best Blastp Hit: gb|AAF41015.1| (AE002415) membrane protein [Neisseria meningitidis MC58]; COG1108 ABC-type Mn/Zn transport systems, ATPase
YP_207338.1	Best Blastp Hit: gb|AAF41016.1| (AE002415) ABC transporter ATP-binding protein [Neisseria meningitidis MC58]; COG1121 ABC-type iron (III) transport system, ATPase
YP_207339.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_207340.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_207341.1	Essential for efficient processing of 16S rRNA
YP_207342.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_207343.1	Best Blastp Hit: gb|AAF41022.1| (AE002415) sensor histidine kinase [Neisseria meningitidis MC58]; COG0642 Sensory transduction histidine kinases
YP_207344.1	Best Blastp Hit: pir||H81180 DNA-binding response regulator NMB0595 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225825|gb|AAF41023.1| (AE002415) DNA-binding response regulator [Neisseria meningitidis MC58] >gi|7379518|emb|CAB84081.1| (AL162754)  two-component system regulator [Neisseria meningitidis]; COG0745 Response regulators consisting of a
YP_207345.1	Best Blastp Hit: pir||A81181 hypothetical protein NMB0596 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225826|gb|AAF41024.1| (AE002415) hypothetical protein [Neisseria meningitidis MC58]
YP_207346.1	Best Blastp Hit: pir||B81181 hypothetical protein NMB0597 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225827|gb|AAF41025.1| (AE002415) hypothetical protein [Neisseria meningitidis MC58]
YP_207347.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_207348.1	Best Blastp Hit: pir||C81925 probable sec-independent protein translocase component NMA0803 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379523|emb|CAB84086.1| (AL162754)  sec-independent protein translocase component [Neisseria meningitidis]; COG0805 Sec-independent protein secretion pathway
YP_207349.1	Best Blastp Hit: pir||E81181 hypothetical protein NMB0600 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225830|gb|AAF41028.1| (AE002415) hypothetical protein [Neisseria meningitidis MC58]
YP_207350.1	TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes
YP_207351.1	Best Blastp Hit: sp|O07817|HITA_NEIGO HITA protein >gi|2197079|gb|AAB61288.1| (AF003550) HitA [Neisseria gonorrhoeae]; COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase; histidine triad-family protein
YP_207352.1	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis
YP_207353.1	Best Blastp Hit: pir||H81925 probable alcohol dehydrogenase (EC 1.1.1.-) NMA0808 [similarity] - Neisseria meningitidis (group A strain Z2491) >gi|7379528|emb|CAB84091.1| (AL162754)  zinc-binding alcohol dehydrogenase [Neisseria meningitidis]; COG1065 Zn-dependent oxidoreductases
YP_207354.1	Best Blastp Hit: gb|AAF41032.1| (AE002416) histone deacetylase [Neisseria meningitidis MC58]; COG0123 Deacetylases, including yeast histone
YP_207355.1	Best Blastp Hit: gb|AAF41033.1| (AE002416) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1862 Uncharacterized secreted proteins, YajC
YP_207356.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_207357.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_207358.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_207359.1	Best Blastp Hit: gb|AAF41037.1| (AE002416) spermidine/putrescine ABC transporter ATP-binding protein [Neisseria meningitidis MC58]; COG1128 ABC-type spermidine/putrescine transport
YP_207360.1	Best Blastp Hit: gb|AAF41038.1| (AE002416) spermidine/putrescine ABC transporter permease [Neisseria meningitidis MC58]; COG1176 ABC-type spermidine/putrescine transport
YP_207361.1	Best Blastp Hit: pir||E81179 spermidine/putrescine ABC transporter permease NMB0612 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225842|gb|AAF41039.1| (AE002416) spermidine/putrescine ABC transporter permease [Neisseria meningitidis MC58]; COG1177 ABC-type spermidine/putrescine transport
YP_207362.1	Best Blastp Hit: possible phase variable - 8T residue homopolymer repeat in the coding sequence (ON); COG0665 Predicted oxidoreductases
YP_207363.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); COG0004 Ammonia permeases
YP_207364.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_207365.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_207366.1	Best Blastp Hit: pir||G81087 IS1016C2 transposase NMB1411 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226649|gb|AAF41773.1| (AE002489) IS1016C2 transposase [Neisseria meningitidis MC58]
YP_207367.1	Best Blastp Hit: pir||H81177 conserved hypothetical protein NMB0619 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225849|gb|AAF41045.1| (AE002417) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1806 Uncharacterized BCR, YdiA family
YP_207368.1	Best Blastp Hit: gb|AAF41046.1| (AE002417) phosphoglycolate phosphatase [Neisseria meningitidis MC58]; COG0546 Predicted phosphatases
YP_207369.1	Best Blastp Hit: pir||B81178 conserved hypothetical protein NMB0621 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225851|gb|AAF41047.1| (AE002417) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_207370.1	Best Blastp Hit: sp|P57068|LOLA_NEIMB outer-membrane lipoproteins carrier protein precursor >gi|11281795|pir||C81178 outer membrane lipoprotein carrier protein NMB0622 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225852|gb|AAF41048.1| (AE002417) outer membrane lipoprotein carrier protein [Neisseria meningitidis MC58]; lipoprotein carrier precursor, periplasmic binding
YP_207371.1	Best Blastp Hit: pir||D81176 spermidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein NMB0623 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225854|gb|AAF41049.1| (AE002418) spermidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein [Neisseria meningitidis MC58]; COG0687 Spermidine/putrescine-binding periplasmic
YP_207372.1	Best Blastp Hit: possibly phase variable - 5 tandem repeats of CAAACAC in the coding sequence (ON); COG0463 Glycosyl transferases involved in cell wall
YP_207373.1	Best Blastp Hit: pir||E81176 conserved hypothetical protein NMB0625 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225855|gb|AAF41050.1| (AE002418) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0663 Carbonic anhydrases/acetyltransferases
YP_207374.1	stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein
YP_207375.1	PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers
YP_207376.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_207377.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_207378.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_207379.1	Best Blastp Hit: emb|CAB84122.1| (AL162754) phosphate acyltransferase [Neisseria meningitidis]; COG0280 Phosphotransacetylase
YP_207380.1	Best Blastp Hit: emb|CAB84123.1| (AL162754) iron-uptake permease ATP-binding protein [Neisseria meningitidis]; COG1101 ATPase components of various transport; protein FbpC
YP_207381.1	Best Blastp Hit: R] COG1081 Uncharacterized permeases
YP_207382.1	Best Blastp Hit: gb|AAB63559.1| (U33937) binds iron in a manner similar to transferrin; periplasmic iron-binding protein; Method: conceptual translation supplied by author [Neisseria gonorrhoeae] >gi|1588872|prf||2209379A fbpA gene [Neisseria gonorrhoeae]; COG1840 Thiamine-binding periplasmic proteins; protein FbpA
YP_207383.1	Best Blastp Hit: pir||A81175 hypothetical protein NMB0636 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225865|gb|AAF41059.1| (AE002419) hypothetical protein [Neisseria meningitidis MC58]
YP_207384.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_207385.1	Best Blastp Hit: pir||C81175 UTP--glucose-1-phosphate uridylyltransferase NMB0638 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225867|gb|AAF41061.1| (AE002419) UTP--glucose-1-phosphate uridylyltransferase [Neisseria meningitidis MC58]; COG1210 UDP-glucose pyrophosphorylase
YP_207386.1	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_207387.1	Best Blastp Hit: gb|AAF41063.1| (AE002419) hypothetical protein [Neisseria meningitidis MC58]
YP_207388.1	catalyzes the hydrolysis of pyrophosphate to phosphate
YP_207389.1	converts dATP to dAMP and pyrophosphate
YP_207390.1	Best Blastp Hit: gb|AAF62313.1| (AE002419) MafB-related protein [Neisseria meningitidis MC58]; MafB1 protein
YP_207391.1	Best Blastp Hit: pir||C81176 hypothetical protein NMB0648 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225875|gb|AAF41069.1| (AE002419) hypothetical protein [Neisseria meningitidis MC58]
YP_207392.1	Best Blastp Hit: emb|CAB84136.1| (AL162754) hypothetical protein NMA0855 [Neisseria meningitidis]
YP_207393.1	Best Blastp Hit: pir||E81931 hypothetical protein NMA0857 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379573|emb|CAB84138.1| (AL162754) hypothetical protein NMA0857 [Neisseria meningitidis]
YP_207394.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON)
YP_207395.1	Best Blastp Hit: pir||G81931 probable transmembrane potassium transporter NMA0859 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379575|emb|CAB84140.1| (AL162754)  transmembrane potassium transporter [Neisseria meningitidis]; COG0168 Potassium uptake system component TrkG
YP_207396.1	hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP
YP_207397.1	Best Blastp Hit: pir||F81174 ribonuclease, probable NMB0662 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225887|gb|AAF41080.1| (AE002420) ribonuclease,  [Neisseria meningitidis MC58]; COG0251  translation initiation inhibitor
YP_207398.1	Best Blastp Hit: gb|AAB41581.1| (U52069) outer membrane protein [Neisseria gonorrhoeae]
YP_207399.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_207400.1	Best Blastp Hit: pir||F81172 DNA ligase NMB0666 [imported] - Neisseria meningitidis  (group B strain MD58) >gi|7225892|gb|AAF41084.1| (AE002421) DNA ligase [Neisseria meningitidis MC58]; COG0272 NAD-dependent DNA ligase (contains BRCT
YP_207401.1	Best Blastp Hit: pir||G81172 hypothetical protein NMB0667 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225893|gb|AAF41085.1| (AE002421) hypothetical protein [Neisseria meningitidis MC58]
YP_207402.1	Best Blastp Hit: pir||F81932 probable anhydro-N-acetylmuramyl-tripeptide amidase NMA0867 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379582|emb|CAB84147.1| (AL162754) anhydro-N-acetylmuramyl-tripeptide amidase [Neisseria meningitidis]
YP_207403.1	Best Blastp Hit: pir||A81173 conserved hypothetical protein NMB0669 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225895|gb|AAF41087.1| (AE002421) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1559 Uncharacterized BCR, YceG family
YP_207404.1	catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP)
YP_207405.1	Best Blastp Hit: pir||A81933 probable malate dehydrogenase (oxaloacetate-decarboxylating) (EC 1.1.1.38) NMA0870 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379585|emb|CAB84150.1| (AL162754) malate oxidoreductase [Neisseria meningitidis]; COG0281 Malic enzyme
YP_207406.1	Best Blastp Hit: emb|CAB84151.1| (AL162754) hypothetical protein NMA0871 [Neisseria meningitidis]
YP_207407.1	transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate
YP_207408.1	Best Blastp Hit: pir||G81170 probable periplasmic protein NMA0873 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225900|gb|AAF41091.1| (AE002422) hypothetical protein [Neisseria meningitidis MC58] >gi|7379588|emb|CAB84153.1| (AL162754)  periplasmic protein [Neisseria meningitidis]
YP_207409.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON)
YP_207410.1	CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS
YP_207411.1	Best Blastp Hit: pir||G81933 hypothetical protein NMA0876 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379591|emb|CAB84156.1| (AL162754) hypothetical protein NMA0876 [Neisseria meningitidis]
YP_207412.1	Best Blastp Hit: emb|CAB84157.1| (AL162754) hypothetical protein NMA0877 [Neisseria meningitidis]
YP_207413.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_207414.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits
YP_207415.1	Best Blastp Hit: pir||A43857 cryptic protein cnp1 - Neisseria gonorrhoeae >gi|150247|gb|AAA25449.1| (M84111) cryptic protein [Transposon Tn] >gi|246454|gb|AAB21607.1| (S85411) cryptic neisserial protein=cnp1 [Neisseria gonorrhoeae, Peptide, 203 aa]
YP_207416.1	Best Blastp Hit: pir||F81934 probable lipoprotein NMA0883 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379598|emb|CAB84163.1| (AL162754) lipoprotein [Neisseria meningitidis]
YP_207417.1	Best Blastp Hit: emb|CAB72028.1| (AJ391260) transposase [Neisseria meningitidis]
YP_207418.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_207419.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_207420.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_207421.1	Best Blastp Hit: pir||C81172 hypothetical protein NMB0685 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225912|gb|AAF41103.1| (AE002422) hypothetical protein [Neisseria meningitidis MC58]
YP_207422.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_207423.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_207424.1	catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis
YP_207425.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_207426.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_207427.1	Best Blastp Hit: gb|AAF62316.1| (AE002423) colicin V production protein,  [Neisseria meningitidis MC58]; COG1286 Uncharacterized membrane protein, required
YP_207428.1	Best Blastp Hit: emb|CAA92429.1| (Z68205) tpc [Neisseria gonorrhoeae]
YP_207429.1	Best Blastp Hit: pir||S63583 tetrahydrofolylpolyglutamate synthase (EC 6.3.2.17) / dihydrofolate synthase (EC 6.3.2.12) - Neisseria gonorrhoeae (strain MS11) >gi|1237077|emb|CAA92428.1| (Z68205) folC [Neisseria gonorrhoeae]; COG0285 Folylpolyglutamate synthase
YP_207430.1	Best Blastp Hit: pir||S63582 folI protein - Neisseria gonorrhoeae (strain MS11) >gi|1237076|emb|CAA92427.1| (Z68205) folI [Neisseria gonorrhoeae]; folC transcriptional regulator
YP_207431.1	Best Blastp Hit: pir||D81936 hypothetical protein NMA0899 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379612|emb|CAB84177.1| (AL162754) hypothetical protein NMA0899 [Neisseria meningitidis]
YP_207432.1	Best Blastp Hit: pir||E81936 probable amino acid permease ATP-binding protein NMA0900 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379613|emb|CAB84178.1| (AL162754)  amino acid permease ATP-binding protein [Neisseria meningitidis]; COG1126 ABC-type polar amino acid transport system
YP_207435.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_207436.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_207437.1	Best Blastp Hit: prf||1303333A protease Ig A [Neisseria gonorrhoeae]
YP_207438.1	Best Blastp Hit: sp|P51973|COMA_NEIGO competence protein ComA >gi|481875|pir||S39867 competence protein comA - Neisseria gonorrhoeae >gi|913748|gb|AAB32261.1| (S75490) ComA=inner membrane protein [Neisseria gonorrhoeae, MS11, Peptide, 691 aa]
YP_207439.1	Best Blastp Hit: sp|Q50985|COML_NEIGO competence lipoprotein ComL precursor >gi|2120876|pir||S71020 peptidoglycan-linked lipoprotein precursor - Neisseria gonorrhoeae >gi|1107833|emb|CAA90076.1| (Z49895) ComL, competence lipoprotein [Neisseria gonorrhoeae] >gi|1588996|prf||2209423A lipoprotein [Neisseria gonorrhoeae]; COG0457 TPR-repeat-containing proteins
YP_207440.1	Best Blastp Hit: pir||A81168 ribosomal large chain pseudouridine synthase D NMB0704 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225933|gb|AAF41121.1| (AE002425) ribosomal large subunit pseudouridine synthase D [Neisseria meningitidis MC58]; COG0564 Predicted pseudouridylate synthase 2
YP_207442.1	Best Blastp Hit: pir||F81937 hypothetical protein NMA0911 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379622|emb|CAB84187.1| (AL162754) hypothetical protein NMA0911 [Neisseria meningitidis]; COG1496 Uncharacterized ACR, YfiH family
YP_207443.1	Best Blastp Hit: emb|CAB84188.1| (AL162754) lipoprotein [Neisseria meningitidis]
YP_207444.1	required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA
YP_207445.1	Best Blastp Hit: pir||A81938 probable membrane protein NMA0914 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379625|emb|CAB84190.1| (AL162754) membrane protein [Neisseria meningitidis] >gi|7413439|gb|AAF62317.1| (AE002425) hypothetical protein [Neisseria meningitidis MC58]
YP_207446.1	Best Blastp Hit: gb|AAF62318.1| (AE002425) hypothetical protein [Neisseria meningitidis MC58]
YP_207447.1	Best Blastp Hit: pir||F81168 conserved hypothetical protein NMB0711 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225938|gb|AAF41126.1| (AE002425) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1561 Uncharacterized stress-induced protein, YicC
YP_207448.1	binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters
YP_207449.1	Transfers the fatty acyl group on membrane lipoproteins
YP_207450.1	Best Blastp Hit: gb|AAG05246.1|AE004611_11 (AE004611) conserved hypothetical protein [Pseudomonas aeruginosa]
YP_207451.1	the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli
YP_207452.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON)
YP_207453.1	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic
YP_207454.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_207455.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_207456.1	IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits
YP_207457.1	Best Blastp Hit: pir||E81165 50S ribosomal protein L35 NMB0722 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225949|gb|AAF41135.1| (AE002427) 50S ribosomal protein L35 [Neisseria meningitidis MC58] >gi|7379636|emb|CAB84203.1| (AL162754)  50S ribosomal protein L35 [Neisseria meningitidis]; COG0291 Ribosomal protein L35
YP_207458.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_207459.2	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_207460.1	Best Blastp Hit: emb|CAB59896.1| (AJ238948)  very short patch repair endonuclease [Neisseria meningitidis]
YP_207462.1	Best Blastp Hit: gb|AAD19409.1| (AF102543) unknown [Zymomonas mobilis]
YP_207463.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_207464.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_207465.1	Best Blastp Hit: emb|CAB84210.1| (AL162754) hypothetical protein NMA0939 [Neisseria meningitidis]
YP_207466.1	F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein
YP_207467.1	Best Blastp Hit: pir||D81164 adenosylmethionine-8-amino-7-oxononanoate aminotransferase NMB0732 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225960|gb|AAF41145.1| (AE002428) adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Neisseria meningitidis MC58]; COG0161 Adenosylmethionine-8-amino-7-oxononanoate
YP_207468.1	DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium
YP_207469.1	Best Blastp Hit: pir||H81940 hypothetical protein NMA0944 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379648|emb|CAB84215.1| (AL162754) hypothetical protein NMA0944 [Neisseria meningitidis]
YP_207471.1	catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway
YP_207472.1	Best Blastp Hit: pir||B81941 probable regulatory protein NMA0946 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379650|emb|CAB84217.1| (AL162754) regulatory protein [Neisseria meningitidis]; COG1762 Phosphotransferase system
YP_207473.1	catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system
YP_207474.1	Best Blastp Hit: pir||D81941 hypothetical protein NMA0948 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379652|emb|CAB84219.1| (AL162754) hypothetical protein NMA0948 [Neisseria meningitidis]; COG1660 Uncharacterized BCR, YhbJ/UPF0042 family
YP_207475.1	essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc)
YP_207476.1	Best Blastp Hit: pir||F81941 hypothetical protein NMA0951 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379654|emb|CAB84221.1| (AL162754) hypothetical protein NMA0951 [Neisseria meningitidis]; COG1386 Uncharacterized ACR
YP_207477.1	Best Blastp Hit: pir||D81165 DNA repair protein RecN NMB0740 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225968|gb|AAF41153.1| (AE002428) DNA repair protein RecN [Neisseria meningitidis MC58]; COG0497 ATPases involved in DNA repair
YP_207478.1	Best Blastp Hit: emb|CAB84224.1| (AL162754) hypothetical protein NMA0954 [Neisseria meningitidis]; COG0500 SAM-dependent methyltransferases
YP_207479.1	Best Blastp Hit: pir||B81942 hypothetical protein NMA0955 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379658|emb|CAB84225.1| (AL162754) hypothetical protein NMA0955 [Neisseria meningitidis]
YP_207480.1	Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone
YP_207481.1	Best Blastp Hit: pir||G81162 hypothetical protein NMB0744 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225973|gb|AAF41157.1| (AE002429) hypothetical protein [Neisseria meningitidis MC58]
YP_207482.1	Best Blastp Hit: H]COG08017, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
YP_207483.1	Best Blastp Hit: pir||A81163 conserved hypothetical protein NMB0746 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225975|gb|AAF41159.1| (AE002429) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_207484.1	Best Blastp Hit: pir||C81163 host factor-I NMB0748 [imported] - Neisseria meningitidis  (group B strain MD58, group A strain Z2491) >gi|7225977|gb|AAF41161.1| (AE002429) host factor-I [Neisseria meningitidis MC58] >gi|7379664|emb|CAB84231.1| (AL162754)  regulator [Neisseria meningitidis]; COG1923 Uncharacterized ACR, host factor I protein
YP_207485.1	Best Blastp Hit: gb|AAD38860.1|AF156692_1 (AF156692) penicillin-binding protein 4 [Neisseria gonorrhoeae]; COG1686 D-alanyl-D-alanine carboxypeptidase
YP_207486.1	Best Blastp Hit: pir||B81943 hypothetical protein NMA0963 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379666|emb|CAB84233.1| (AL162754) hypothetical protein NMA0963 [Neisseria meningitidis]; COG12 25 Peroxiredoxins
YP_207487.1	Best Blastp Hit: pir||F81163 integrase/recombinase XerD NMB0751 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225980|gb|AAF41164.1| (AE002429) integrase/recombinase XerD [Neisseria meningitidis MC58]; COG0582 Integrase
YP_207488.1	Best Blastp Hit: >pir||B81163 conserved hypothetical protein NMB0747 [imported] - Neisseria meningitidis (group B strain MD58) gb|AAF41160.1| (AE002429) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_207489.1	Best Blastp Hit: >pir||B81163 conserved hypothetical protein NMB0747 [imported] - Neisseria meningitidis (group B strain MD58) gb|AAF41160.1| (AE002429) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_207490.1	Best Blastp Hit: pir||F81943 probable dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) NMA0967 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379670|emb|CAB84237.1| (AL162754) dTDP-4-dehydrorhamnose reductase [Neisseria meningitidis]; COG1091 dTDP-4-dehydrorhamnose reductase
YP_207491.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_207492.1	Best Blastp Hit: pir||C81161 polyribonucleotide nucleotidyltransferase NMB0758 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225988|gb|AAF41171.1| (AE002430) polyribonucleotide nucleotidyltransferase [Neisseria meningitidis MC58]; COG1185 Polyribonucleotide nucleotidyltransferase
YP_207493.1	Best Blastp Hit: pir||D81161 conserved hypothetical protein NMB0759 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225989|gb|AAF41172.1| (AE002430) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_207494.1	Best Blastp Hit: emb|CAB84241.1| (AL162754) lipoprotein [Neisseria meningitidis]
YP_207495.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_207496.1	Best Blastp Hit: possibly phase variable - 8T residue homopolymer repeat in the coding sequence (ON)
YP_207497.1	Best Blastp Hit: confirmed inframe stop
YP_207498.1	Best Blastp Hit: pir||T30271 surface protein - fluke (Schistosoma mansoni) (fragment) >gi|501209|gb|AAA73556.1| (M99494) surface protein [Schistosoma mansoni]
YP_207499.1	Best Blastp Hit: gb|AAF41178.1| (AE002430) signal peptidase I [Neisseria meningitidis MC58]; COG0681 Signal peptidase I
YP_207500.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_207501.1	Best Blastp Hit: pir||D81159 5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase NMB0767 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225998|gb|AAF41180.1| (AE002431) 5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase [Neisseria meningitidis MC58]; COG0775 Nucleoside phosphorylase
YP_207502.1	Best Blastp Hit: pir||B81945 probable pilus retraction protein NMA0979 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379682|emb|CAB84249.1| (AL162754)  pilus retraction protein [Neisseria meningitidis]; COG0630 Predicted ATPases involved in pili
YP_207503.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA
YP_207504.1	Best Blastp Hit: pir||D81945 probable pilus biogenesis protein NMA0981 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379684|emb|CAB84251.1| (AL162754)  pilus biogenesis protein [Neisseria meningitidis]
YP_207505.1	Best Blastp Hit: pir||E81945 hypothetical protein NMA0982 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379685|emb|CAB84252.1| (AL162754) hypothetical protein NMA0982 [Neisseria meningitidis]; COG0084 Predicted hydrolases of PHP superfamily
YP_207506.1	Best Blastp Hit: gb|AAF41185.1| (AE002431) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_207507.1	Best Blastp Hit: pir||B81160 conserved hypothetical protein NMB0773 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226004|gb|AAF41186.1| (AE002431) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379687|emb|CAB84254.1| (AL162754) hypothetical protein NMA0984 [Neisseria meningitidis]; COG0278 Glutaredoxin-related proteins
YP_207508.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON)
YP_207509.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_207510.1	Best Blastp Hit: pir||D81160 hypothetical protein NMB0775 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226006|gb|AAF41188.1| (AE002431) hypothetical protein [Neisseria meningitidis MC58]
YP_207511.1	Best Blastp Hit: gi|10803654  ISH4 transposase [Halobacterium sp. NRC-1] >gi|7484109|pir||T08324 probable transposase - Halobacterium sp. (strain NRC-1) insertion sequence ISH4 plasmid pNRC100 >gi|2822385|gb|AAC82891.1| (AF016485)  ISH4 transposase [Halobacterium sp. NRC-1] >gi|10580476|gb|AAG19350.1| (AE005029) Vng0918h [Halobacterium sp. NRC-1]
YP_207512.1	Best Blastp Hit: sp|Q07605|T4BA_BACCO restriction enzyme BGCI alpha subunit [includes: adenine-specific methyltransferase activity ] >gi|1075788|pir||A53125 restriction enzyme BcgI alpha chain - Bacillus coagulans >gi|304140|gb|AAA16626.1| (L17341) restriction endonuclease alpha subunit [Bacillus coagulans]; COG0286 Type I restriction-modification system
YP_207513.1	Best Blastp Hit: sp|Q07606|T4BB_BACCO restriction enzyme BGCI beta subunit >gi|1075789|pir||B53125 restriction enzyme BcgI beta chain - Bacillus coagulans >gi|304141|gb|AAA16627.1| (L17341) restriction endonuclease beta subunit [Bacillus coagulans]
YP_207514.1	Best Blastp Hit: gb|AAD13642.1| (AF003941) Gly1ORF1 [Neisseria gonorrhoeae]
YP_207515.1	catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis
YP_207516.1	Best Blastp Hit: pir||G81160 uroporphyrin-III C-methyltransferase HemX, probable NMB0778 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226009|gb|AAF41191.1| (AE002431) uroporphyrin-III C-methyltransferase HemX,  [Neisseria meningitidis MC58]
YP_207517.1	Best Blastp Hit: pir||E81946 hypothetical protein NMA0990 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379693|emb|CAB84260.1| (AL162754) hypothetical protein NMA0990 [Neisseria meningitidis]
YP_207518.1	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III
YP_207519.1	Best Blastp Hit: pir||B55225 stress-sensitive restriction system protein 2 - Corynebacterium glutamicum (ATCC 13032) >gi|549844|gb|AAC00044.1| (U13922) This orf may encode a typeI or typeIII restriction endonuclease which is stress-sensitive and ATP-dependent. It contains a typical ATP binding region (Walker motif) [Corynebacterium glutamicum]
YP_207520.1	Best Blastp Hit: pir||T10166 restriction endonuclease (EC 3.1.21.-) NgoVII - Neisseria gonorrhoeae >gi|1165246|gb|AAA86271.1| (U43736) R.NgoVII [Neisseria gonorrhoeae]
YP_207521.1	Best Blastp Hit: pir||T10165 site-specific DNA-methyltransferase (cytosine-specific) (EC 2.1.1.73) NgoVII - Neisseria gonorrhoeae >gi|1165245|gb|AAA86270.1| (U43736) M.NgoVII [Neisseria gonorrhoeae]; COG0270 Site-specific DNA methylase dcm
YP_207522.1	Best Blastp Hit: possibly phase variable - 22 tandem repeats of AACGC in the coding sequence (ON)
YP_207523.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_207524.1	Best Blastp Hit: pir||D81158 conserved hypothetical protein NMB0783 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226015|gb|AAF41196.1| (AE002432) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_207525.1	Best Blastp Hit: emb|CAB84264.1| (AL162754) periplasmic protein [Neisseria meningitidis]; COG0607 Rhodanese-related sulfurtransferases
YP_207526.1	Best Blastp Hit: pir||F81158 exodeoxyribonuclease V 135 KD polypeptide NMB0785 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226017|gb|AAF41198.1| (AE002432) exodeoxyribonuclease V 135 KD polypeptide [Neisseria meningitidis MC58]; COG1074 ATP-dependent exo DNAse (exonuclease V)
YP_207527.1	Best Blastp Hit: pir||G81158 conserved hypothetical protein NMB0786 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226018|gb|AAF41199.1| (AE002432) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_207528.1	Best Blastp Hit: pir||H81158 amino acid ABC transporter periplasmic amino acid-binding protein NMB0787 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226019|gb|AAF41200.1| (AE002432) amino acid ABC transporter periplasmic amino acid-binding protein [Neisseria meningitidis MC58]; COG0834 Periplasmic amino acid binding proteins
YP_207529.1	Best Blastp Hit: pir||E81947 probable amino acid permease integral membrane protein NMA0999 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379701|emb|CAB84268.1| (AL162754)  amino acid permease integral membrane protein [Neisseria meningitidis]; COG0765 Amino acid ABC transporter permease
YP_207530.1	Best Blastp Hit: pir||F81947 probable amino acid permease ATP-binding protein NMA1000 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379702|emb|CAB84269.1| (AL162754)  amino acid permease ATP-binding protein [Neisseria meningitidis]; COG1126 ABC-type polar amino acid transport system
YP_207531.1	Best Blastp Hit: sp|P40390|PGMU_NEIGO phosphoglucomutase (glucose phosphomutase) (PGM) >gi|1073189|pir||A53614 phosphoglucomutase (EC 5.4.2.2) - Neisseria gonorrhoeae (strain 1291) >gi|414527|gb|AAA20588.1| (U02489) phosphoglucomutase [Neisseria gonorrhoeae] >gi|452116|gb|AAA20399.1| (L23426) phosphoglucomutase [Neisseria gonorrhoeae]; COG1109 Phosphomannomutase; protein Pgm
YP_207532.1	Best Blastp Hit: pir||F81156 peptidylprolyl isomerase (EC 5.2.1.8) B NMA1002 [similarity] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226024|gb|AAF41204.1| (AE002433) peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis MC58] >gi|7379704|emb|CAB84271.1| (AL162754)  peptidyl-prolyl cis-trans isomerase B [Neisseria meningitidis]; COG0652 Peptidyl-prolyl cis-trans isomerase
YP_207533.1	Best Blastp Hit: pir||G81156 transporter NadC family NMB0792 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226025|gb|AAF41205.1| (AE002433) transporter NadC family [Neisseria meningitidis MC58]; COG0471 Cation transporters
YP_207534.1	Best Blastp Hit: pir||A81157 hypothetical protein NMB0794 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226027|gb|AAF41207.1| (AE002433) hypothetical protein [Neisseria meningitidis MC58]
YP_207535.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_207536.1	Best Blastp Hit: sp|Q9JRC2|YA05_NEIMA hypothetical protein NMA1005/NMB0796 >gi|7226029|gb|AAF41209.1| (AE002433) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379707|emb|CAB84274.1| (AL162754) hypothetical protein NMA1005 [Neisseria meningitidis]
YP_207537.1	Best Blastp Hit: pir||D81157 conserved hypothetical protein NMB0797 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226030|gb|AAF41210.1| (AE002433) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_207538.1	Best Blastp Hit: pir||E81157 cell division protein FtsH NMB0798 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226031|gb|AAF41211.1| (AE002433) cell division protein FtsH [Neisseria meningitidis MC58]; COG0465 ATP-dependent Zn proteases
YP_207539.1	Best Blastp Hit: pir||F81157 cell division protein FtsJ NMB0799 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226032|gb|AAF41212.1| (AE002433) cell division protein FtsJ [Neisseria meningitidis MC58] >gi|7379710|emb|CAB84277.1| (AL162754)  cell division protein [Neisseria meningitidis]; COG0293 Methyltranferase FtsJ involved in cell
YP_207540.1	Best Blastp Hit: emb|CAB84278.1| (AL162754) hypothetical protein NMA1009 [Neisseria meningitidis]; COG1534 Predicted RNA-binding protein containing KH
YP_207541.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_207542.1	Best Blastp Hit: pir||A81158 cystathionine beta-lyase (EC 4.4.1.8) NMB0802 [similarity] - Neisseria meningitidis (group B strain MD58) >gi|7226035|gb|AAF41215.1| (AE002433) cystathionine gamma-synthase [Neisseria meningitidis MC58]; COG0626 Cystathionine beta-lyases/cystathionine
YP_207543.1	similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis
YP_207544.1	Best Blastp Hit: pir||C81155 NAD(P)H nitroreductase, probable NMB0804 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226038|gb|AAF41217.1| (AE002434) NAD(P)H nitroreductase,  [Neisseria meningitidis MC58]; COG0778 Nitroreductases
YP_207545.1	Best Blastp Hit: pir||E81155 conserved hypothetical protein NMB0806 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226040|gb|AAF41219.1| (AE002434) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1187 Predicted pseudouridylate synthase 1
YP_207546.1	catalyzes the phosphorylation of NAD to NADP
YP_207547.1	Best Blastp Hit: pir||G81155 hypothetical protein NMB0808 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226042|gb|AAF41221.1| (AE002434) hypothetical protein [Neisseria meningitidis MC58]
YP_207548.1	Best Blastp Hit: pir||A81950 hypothetical protein NMA1019 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379721|emb|CAB84288.1| (AL162754) hypothetical protein NMA1019 [Neisseria meningitidis]; COG0451 Nucleoside-diphosphate-sugar epimerases
YP_207549.1	Best Blastp Hit: gb|AAF41223.1| (AE002434) transcriptional regulator, TetR family [Neisseria meningitidis MC58]; COG1309 Transcriptional regulators, AcrR family
YP_207550.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_207551.1	NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones
YP_207552.1	Best Blastp Hit: gb|AAF41226.1| (AE002434) hypothetical protein [Neisseria meningitidis MC58]
YP_207553.1	May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
YP_207554.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_207555.1	metalloprotease
YP_207556.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_207557.1	OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_207558.1	Best Blastp Hit: gb|AAF41238.1| (AE002435) ADP-heptose synthase,  [Neisseria meningitidis MC58]; COG0524 Sugar kinases, ribokinase
YP_207559.1	Best Blastp Hit: gb|AAA79173.1| (L07845) ADP-L-glycero-D-mannoheptose epimerase [Neisseria gonorrhoeae]; COG0451 Nucleoside-diphosphate-sugar epimerases
YP_207560.1	Best Blastp Hit: pir||F81152 type I restriction enzyme EcoR124II M protein NMB0829 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226064|gb|AAF41241.1| (AE002436) type I restriction enzyme EcoR124II M protein [Neisseria meningitidis MC58]; COG0286 Type I restriction-modification system
YP_207561.1	Best Blastp Hit: pir||G65165 DNA-damage-inducible protein d - Escherichia coli >gi|290495|gb|AAA61998.1| (L10328) o278 [Escherichia coli] >gi|1790076|gb|AAC76669.1| (AE000441) DNA-damage-inducible protein [Escherichia coli]
YP_207562.1	Best Blastp Hit: gb|AAF41246.1| (AE002436) type I restriction enzyme EcoR124II R protein,  [Neisseria meningitidis MC58]; COG0610 Restriction enzymes type I helicase subunits
YP_207563.1	Best Blastp Hit: pir||D81153 ATP-dependent Clp proteinase, ATP-binding chain ClpA NMB0836 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226070|gb|AAF41247.1| (AE002436) ATP-dependent Clp protease, ATP-binding subunit ClpA [Neisseria meningitidis MC58]; COG0542 ATPases with chaperone activity, ATP-binding
YP_207564.1	involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA
YP_207565.1	Best Blastp Hit: pir||C81151 cold-shock domain family protein NMB0838 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226073|gb|AAF41249.1| (AE002437) cold-shock domain family protein [Neisseria meningitidis MC58]; COG1278 Cold shock proteins; cold shock protein
YP_207566.1	Best Blastp Hit: pir||H81869 hypothetical protein NMA1048 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379746|emb|CAB84314.1| (AL162755) hypothetical protein NMA1048 [Neisseria meningitidis]; COG0312 Predicted Zn-dependent proteases and their
YP_207567.1	Best Blastp Hit: pir||A81870 hypothetical protein NMA1049 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379747|emb|CAB84315.1| (AL162755) hypothetical protein NMA1049 [Neisseria meningitidis]
YP_207568.1	Best Blastp Hit: gb|AAF62913.1| (AF234832) thiosulphate sulphur transferase [Neisseria gonorrhoeae]
YP_207569.1	Best Blastp Hit: gb|AAF62912.1| (AF234832) RecJ [Neisseria gonorrhoeae]; COG0608 Single-stranded DNA-specific exonuclease
YP_207570.1	Best Blastp Hit: emb|CAB84318.1| (AL162755) poly(A) polymerase [Neisseria meningitidis]; COG0617 tRNA nucleotidyltransferase/poly(A)
YP_207571.1	Best Blastp Hit: pir||A81152 hypothetical protein NMB0844 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226079|gb|AAF41255.1| (AE002437) hypothetical protein [Neisseria meningitidis MC58]
YP_207572.1	Best Blastp Hit: pir||F81870 hypothetical protein NMA1056 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379752|emb|CAB84320.1| (AL162755) hypothetical protein NMA1056 [Neisseria meningitidis]; COG1702 Phosphate starvation-inducible protein
YP_207573.1	Best Blastp Hit: emb|CAB84321.1| (AL162755) glycosyl transferase [Neisseria meningitidis]; COG0438 Glycosyltransferases I
YP_207575.1	Best Blastp Hit: pir||A81871 probable periplasmic protein NMA1059 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379755|emb|CAB84323.1| (AL162755) periplasmic protein [Neisseria meningitidis]
YP_207576.1	Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis
YP_207577.1	Best Blastp Hit: pir||C81871 probable periplasmic protein NMA1061 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379757|emb|CAB84325.1| (AL162755) periplasmic protein [Neisseria meningitidis]
YP_207578.1	Required for efficient pilin antigenic variation
YP_207579.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_207580.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON)
YP_207581.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_207582.1	Best Blastp Hit: emb|CAB84330.1| (AL162755) periplasmic protein [Neisseria meningitidis]; COG1101 ATPase components of various transport
YP_207583.1	Best Blastp Hit: emb|CAB84342.1| (AL162755) hypothetical protein NMA1079 [Neisseria meningitidis]
YP_207584.1	Best Blastp Hit: emb|CAB84343.1| (AL162755) hypothetical protein NMA1080 [Neisseria meningitidis]
YP_207585.1	Best Blastp Hit: gb|AAF41275.1| (AE002439) hypothetical protein [Neisseria meningitidis MC58]
YP_207586.1	Best Blastp Hit: pir||A81874 probable periplasmic protein NMA1084 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379779|emb|CAB84347.1| (AL162755) periplasmic protein [Neisseria meningitidis]
YP_207587.1	Best Blastp Hit: emb|CAB84348.1| (AL162755) hypothetical protein NMA1085 [Neisseria meningitidis]; COG0564 Predicted pseudouridylate synthase 2
YP_207588.1	Best Blastp Hit: pir||C81874 hypothetical protein NMA1086 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379781|emb|CAB84349.1| (AL162755) hypothetical protein NMA1086 [Neisseria meningitidis]
YP_207589.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_207590.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_207591.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_207592.1	Incorporates lipoproteins in the outer membrane after they are released by the LolA protein
YP_207593.1	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis
YP_207594.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_207595.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_207596.1	Best Blastp Hit: pir||H81146 penicillin-binding protein NMB0877 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226115|gb|AAF41288.1| (AE002440) penicillin-binding protein [Neisseria meningitidis MC58]; COG1686 D-alanyl-D-alanine carboxypeptidase
YP_207597.1	threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway
YP_207598.1	Best Blastp Hit: pir||F81875 sulfate ABC transporter ATP-binding protein NMA1097 [similarity] - Neisseria meningitidis (group A strain Z2491) >gi|7379792|emb|CAB84360.1| (AL162755)  sulphate permease ATP-binding protein [Neisseria meningitidis]; COG1118 ABC-type sulfate/molybdenum transport
YP_207599.1	Best Blastp Hit: pir||C81147 sulfate ABC transporter permease NMB0880 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226118|gb|AAF41291.1| (AE002440) sulfate ABC transporter permease [Neisseria meningitidis MC58]; COG0555 ABC-type cysteine/molybdate transport
YP_207600.1	Best Blastp Hit: pir||B81876 hypothetical protein NMA1101 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379796|emb|CAB84364.1| (AL162755) hypothetical protein NMA1101 [Neisseria meningitidis]
YP_207601.1	Best Blastp Hit: gb|AAF41294.1| (AE002440) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379797|emb|CAB84365.1| (AL162755)  integral membrane protein [Neisseria meningitidis]; COG1755 Uncharacterized BCR, YpbQ family
YP_207602.1	unwinds double stranded DNA
YP_207603.1	Best Blastp Hit: pir||F81876 hypothetical protein NMA1106 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379800|emb|CAB84368.1| (AL162755) hypothetical protein NMA1106 [Neisseria meningitidis]
YP_207604.1	Best Blastp Hit: pir||F81145 type IV pilus assembly protein PilV, probable NMB0887 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226125|gb|AAF41297.1| (AE002441) type IV pilus assembly protein PilV,  [Neisseria meningitidis MC58]
YP_207605.1	Best Blastp Hit: pir||H81876 probable membrane protein NMA1108 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379802|emb|CAB84370.1| (AL162755) membrane protein [Neisseria meningitidis]
YP_207606.1	Best Blastp Hit: pir||H81145 hypothetical protein NMB0889 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226127|gb|AAF41299.1| (AE002441) hypothetical protein [Neisseria meningitidis MC58]
YP_207607.1	Best Blastp Hit: gb|AAF62322.1| (AE002441) type IV pilin-related protein [Neisseria meningitidis MC58]
YP_207609.1	catalyzes the formation of dUMP from dUTP
YP_207610.1	catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate
YP_207611.1	Best Blastp Hit: pir||F81877 hypothetical protein NMA1114 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379808|emb|CAB84376.1| (AL162755) hypothetical protein NMA1114 [Neisseria meningitidis]
YP_207612.1	Best Blastp Hit: pir||B82272 integrase, phage family VC0847 [imported] - Vibrio cholerae  (group O1 strain N16961) >gi|498253|gb|AAC44230.1| (U02372) integrase [Vibrio cholerae] >gi|1100883|gb|AAA82714.1| (U39068) integrase [Vibrio cholerae] >gi|9655299|gb|AAF94009.1| (AE004170) integrase, phage family [Vibrio cholerae]
YP_207614.1	Best Blastp Hit: gb|AAF94355.1| (AE004199) hypothetical protein [Vibrio cholerae]
YP_207616.1	Best Blastp Hit: pir||A71978 methyl-accepting chemotaxis protein (MCP) - Helicobacter pylori (strain J99) >gi|4154575|gb|AAD05650.1| (AE001446) methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
YP_207617.1	Best Blastp Hit: pir||T13296 hypothetical protein 8 - Streptococcus phage phi-O1205 >gi|2444088|gb|AAC79524.1| (U88974) ORF8 [Streptococcus thermophilus temperate bacteriophage O1205]
YP_207618.1	Best Blastp Hit: emb|CAA61912.1| (X89769) fructose-1,6-bisphosphate aldolase [Euglena gracilis]
YP_207619.1	Best Blastp Hit: gb|AAC98788.1| (AF102780) replicase [Banana bunchy top virus]
YP_207621.1	Best Blastp Hit: gb|AAF41312.1| (AE002442) hypothetical protein [Neisseria meningitidis MC58]
YP_207626.1	Best Blastp Hit: sp|P41637|CADH_PINTA cinnamyl-alcohol dehydrogenase (CAD) >gi|1076238|pir||S49443 cinnamyl-alcohol dehydrogenase (EC 1.1.1.195) A - loblolly pine >gi|558385|emb|CAA86072.1| (Z37991) cinnamyl alcohol dehydrogenase [Pinus taeda]
YP_207627.1	Best Blastp Hit: sp|P55409|Y4DJ_RHISN hypothetical transcriptional regulator Y4DJ >gi|7465604|pir||T02773 y4dJ protein - Rhizobium sp. plasmid pNGR234a >gi|2182353|gb|AAB91639.1| (AE000069) Y4dJ [Rhizobium sp. NGR234]
YP_207629.1	Best Blastp Hit: gb|AAF83310.1|AE003899_2 (AE003899) phage-related repressor protein [Xylella fastidiosa]
YP_207634.1	Best Blastp Hit: gi|9634200 Gp54 [Bacteriophage HK97] >gi|6901629|gb|AAF31132.1| (AF069529) Gp54 [Bacteriophage HK97]
YP_207635.1	Best Blastp Hit: sp|P37469|DNAC_BACSU replicative DNA helicase >gi|2127189|pir||S65970 replicative DNA helicase dnaC - Bacillus subtilis >gi|467330|dbj|BAA05176.1| (D26185) replicative DNA helicase [Bacillus subtilis] >gi|2636591|emb|CAB16081.1| (Z99124) replicative DNA helicase [Bacillus subtilis]; COG0305 Replicative DNA helicase
YP_207639.1	Best Blastp Hit: sp|Q37873|RUSA_BP82 crossover junction endodeoxyribonuclease RusA (Holliday junction nuclease RusA) (Holliday juction resolvase) >gi|2120247|pir||S66583 crossover junction endodeoxyribonuclease (EC 3.1.22.4) rusA - phage 82 >gi|1051116|emb|CAA63330.1| (X92588) Can suppress the phenotype of ruv mutants [Bacteriophage 82]
YP_207642.1	Best Blastp Hit: pir||F69137 hypothetical protein MTH296 - Methanobacterium thermoautotrophicum (strain Delta H) >gi|2621349|gb|AAB84802.1| (AE000815) unknown [Methanobacterium thermoautotrophicum]
YP_207644.1	Best Blastp Hit: sp|P76546|YFFO_ECOLI hypothetical 15.7 KDA protein in EutB-EutH intergenic region >gi|7466364|pir||E65019 hypothetical protein b2446 - Escherichia coli (strain K-12) >gi|1788787|gb|AAC75499.1| (AE000331) orf, hypothetical protein [Escherichia coli]
YP_207645.1	Best Blastp Hit: pir||H82649 hypothetical protein XF1674 XF1569 [imported] - Xylella fastidiosa (strain 9a5c) >gi|9106614|gb|AAF84378.1|AE003986_8 (AE003986) hypothetical protein [Xylella fastidiosa] >gi|9106736|gb|AAF84483.1|AE003993_2 (AE003993) hypothetical protein [Xylella fastidiosa]
YP_207646.1	Best Blastp Hit: pir||G81057 hypothetical protein NMB1656 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226908|gb|AAF42005.1| (AE002516) hypothetical protein [Neisseria meningitidis MC58]
YP_207647.1	Best Blastp Hit: pir||B81819 hypothetical protein NMA1914 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380548|emb|CAB85135.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_207648.1	Best Blastp Hit: sp|P23739|SUIS_RAT sucrase-isomaltase, intestinal [contains: sucrase ; isomaltase ]
YP_207655.1	Best Blastp Hit: gb|AAD32742.1| (AF127374) MmcR [Streptomyces lavendulae]
YP_207658.1	Best Blastp Hit: sp|P77685|SPR_ECOLI lipoprotein SPR precursor >gi|7430106|pir||F64986 hypothetical protein b2175 - Escherichia coli (strain K-12) >gi|1498150|dbj|BAA13140.1| (D86610) Spr [Escherichia coli] >gi|1736840|dbj|BAA15983.1| (D90849) Probable lipoprotein NlpC homolog precursor. [Escherichia coli] >gi|1788501|gb|AAC75236.1| (AE000307)  lipoprotein [Escherichia coli]
YP_207659.1	Best Blastp Hit: gb|AAF84381.1|AE003986_11 (AE003986) hypothetical protein [Xylella fastidiosa] >gi|9106739|gb|AAF84486.1|AE003993_5 (AE003993) hypothetical protein [Xylella fastidiosa]
YP_207660.1	Best Blastp Hit: gi|10955733 phage lambda host specific protein J [Yersinia pestis] >gi|7467468|pir||T14652 protein J - Yersinia pestis plasmid pMT1 >gi|2996342|gb|AAC13222.1| (AF053947) phage lambda host specific protein J [Yersinia pestis]
YP_207662.1	Best Blastp Hit: gb|AAB32262.1|S75490_1 (S75490) orf2 [Neisseria gonorrhoeae]
YP_207666.1	Best Blastp Hit: gb|AAF41321.1| (AE002443) pemK protein [Neisseria meningitidis MC58]
YP_207667.1	Best Blastp Hit: gb|AAF41322.1| (AE002443) pemI protein [Neisseria meningitidis MC58]
YP_207669.1	Best Blastp Hit: pir||B81142 hypothetical protein NMB0912 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226150|gb|AAF41320.1| (AE002443) hypothetical protein [Neisseria meningitidis MC58]
YP_207671.1	Best Blastp Hit: gb|AAF41392.1| (AE002449) hypothetical protein [Neisseria meningitidis MC58]
YP_207672.1	Best Blastp Hit: gi|9634160 tail length tape measure protein [Bacteriophage HK97] >gi|6901589|gb|AAF31092.1|AF069529_5 (AF069529) tail length tape measure protein [Bacteriophage HK97]
YP_207673.1	Best Blastp Hit: pir||H81143 hypothetical protein NMB0899 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226136|gb|AAF41307.1| (AE002442) hypothetical protein [Neisseria meningitidis MC58]
YP_207674.1	Best Blastp Hit: gb|AAF68420.1|AF237934_1 (AF237934)  integrase/recombinase [Pasteurella multocida]; COG0582 Integrase
YP_207675.1	Best Blastp Hit: emb|CAB84662.1| (AL162755) hypothetical protein NMA1423 [Neisseria meningitidis]
YP_207676.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_207677.1	Best Blastp Hit: pir||D81804 hypothetical protein NMA1789 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380430|emb|CAB85016.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_207678.1	Best Blastp Hit: pir||G81087 IS1016C2 transposase NMB1411 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226649|gb|AAF41773.1| (AE002489) IS1016C2 transposase [Neisseria meningitidis MC58]
YP_207679.1	Best Blastp Hit: pir||E81839 probable transmembrane transport protein NMA1483 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380131|emb|CAB84716.1| (AL162756)  transmembrane transport protein [Neisseria meningitidis]; COG1292 Choline-glycine betaine transporter
YP_207680.1	activates fatty acids by binding to coenzyme A
YP_207681.1	Best Blastp Hit: pir||T30159 hypothetical protein C37A2.7 - Caenorhabditis elegans >gi|1943794|gb|AAB52450.1| (U97194) strong similarity to 60S acidic ribosomal protein P2 [Caenorhabditis elegans]
YP_207682.1	Best Blastp Hit: emb|CAB84713.1| (AL162756) periplasmic protein [Neisseria meningitidis]
YP_207683.1	Best Blastp Hit: pir||A81839 probable periplasmic protein NMA1479 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380127|emb|CAB84712.1| (AL162756) periplasmic protein [Neisseria meningitidis]
YP_207684.1	Best Blastp Hit: pir||C81103 alginate O-acetylation protein AlgI, probable NMB1273 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226512|gb|AAF41650.1| (AE002475) alginate O-acetylation protein AlgI,  [Neisseria meningitidis MC58]; COG1696 Predicted membrane protein involved in
YP_207685.1	Best Blastp Hit: emb|CAB84710.1| (AL162756) mercuric ion binding protein [Neisseria meningitidis]; COG2217 Cation transport ATPases
YP_207686.1	Best Blastp Hit: pir||G81102 hypothetical protein NMB1269 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226508|gb|AAF41646.1| (AE002475) hypothetical protein [Neisseria meningitidis MC58]
YP_207687.1	Best Blastp Hit: pir||E81102 low molecular weight protein tyrosine-phosphatase NMB1267 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226506|gb|AAF41644.1| (AE002475) low molecular weight protein tyrosine-phosphatase [Neisseria meningitidis MC58]; COG0394 protein-tyrosine-phosphatase
YP_207688.1	Best Blastp Hit: pir||B81838 probable cation uptake regulator NMA1471 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380120|emb|CAB84705.1| (AL162756)  cation uptake regulator [Neisseria meningitidis]; COG0735 Ferric uptake regulation protein
YP_207689.1	Best Blastp Hit: emb|CAB84704.1| (AL162756) hypothetical protein NMA1470 [Neisseria meningitidis]; COG0523  GTPases (G3E family)
YP_207690.1	Best Blastp Hit: pir||H81837 probable peptidylprolyl isomerase (EC 5.2.1.8) A NMA1469 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380118|emb|CAB84703.1| (AL162756)  peptidyl-prolyl cis-trans isomerase A [Neisseria meningitidis]; COG0652 Peptidyl-prolyl cis-trans isomerase
YP_207691.1	Best Blastp Hit: possibly phase variable - 13 tandem repeats of CCAAC in the coding sequence (ON); COG2189 Adenine specific DNA methylase Mod
YP_207692.1	Best Blastp Hit: gb|AAF41638.1| (AE002474) type III restriction-modification system EcoPI enzyme, subunit res [Neisseria meningitidis MC58]
YP_207693.1	TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs
YP_207694.1	Best Blastp Hit: pir||G81129 conserved hypothetical protein NMB1024 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226264|gb|AAF41424.1| (AE002453) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0354 Predicted aminomethyltransferase related to
YP_207695.1	Best Blastp Hit: gb|AAF41425.1| (AE002453) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0251  translation initiation inhibitor
YP_207696.1	Best Blastp Hit: pir||B81837 hypothetical protein NMA1462 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380112|emb|CAB84696.1| (AL162756) hypothetical protein NMA1462 [Neisseria meningitidis]
YP_207697.1	Best Blastp Hit: emb|CAB84695.1| (AL162756) dnaJ-family protein [Neisseria meningitidis]; COG0484 Molecular chaperones, DnaJ family (contain
YP_207698.1	Best Blastp Hit: pir||B81130 conserved hypothetical protein NMB1028 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226267|gb|AAF41427.1| (AE002453) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_207699.1	Best Blastp Hit: gb|AAG08282.1|AE004902_10 (AE004902) hypothetical protein [Pseudomonas aeruginosa]; COG1629 Outer membrane receptor proteins, mostly
YP_207700.1	Best Blastp Hit: sp|Q03155|AIDA_ECOLI adhesin Aida-i precursor >gi|281809|pir||S28634 adhesin AIDA-I precursor - Escherichia coli plasmid pIB6 >gi|42255|emb|CAA46156.1| (X65022) AIDA-I [Escherichia coli]
YP_207701.1	Best Blastp Hit: gb|AAF40758.1| (AE002388) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_207702.1	catalyzes the formation of fumarate from aspartate
YP_207704.1	Best Blastp Hit: pir||D81130 conserved hypothetical protein NMB1030 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226269|gb|AAF41429.1| (AE002453) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_207705.1	Best Blastp Hit: possibly phase variable - 10A residue homopolymer repeat in the coding sequence (ON)
YP_207706.1	Best Blastp Hit: gb|AAF41720.1| (AE002483) hypothetical protein [Neisseria meningitidis MC58]
YP_207707.1	Best Blastp Hit: gb|AAF41719.1| (AE002482) pyruvate dehydrogenase, E3 component, lipoamide dehydrogenase [Neisseria meningitidis MC58]; COG1249 Dihydrolipoamide dehydrogenase/glutathione
YP_207708.1	Best Blastp Hit: pir||G81094 hypothetical protein NMB1343 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226587|gb|AAF41718.1| (AE002482) hypothetical protein [Neisseria meningitidis MC58]
YP_207709.1	Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA
YP_207710.1	E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC
YP_207711.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_207712.1	Best Blastp Hit: pir||B81094 isomerase, probable NMB1338 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226582|gb|AAF41713.1| (AE002482) isomerase,  [Neisseria meningitidis MC58]; COG0179 2-keto-4-pentenoate
YP_207713.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_207714.1	Best Blastp Hit: gb|AAF41711.1| (AE002482) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1678 Uncharacterized ACR
YP_207715.1	Best Blastp Hit: emb|CAB84776.1| (AL162756) hypothetical lipoprotein [Neisseria meningitidis]
YP_207716.1	Best Blastp Hit: possibly phase variable - 9A residue homopolymer repeat in the coding sequence (ON); COG0739 Membrane proteins related to
YP_207717.1	Best Blastp Hit: pir||E81846 probable carboxy-terminal processing proteinase NMA1546 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380187|emb|CAB84773.1| (AL162756)  carboxy-terminal processing protease [Neisseria meningitidis]; COG0793 Periplasmic protease
YP_207718.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_207719.1	Best Blastp Hit: sp|Q50940|CAH_NEIGO carbonic anhydrase precursor (carbonate dehydratase) >gi|1841441|emb|CAA72038.1| (Y11152) carbonic anhydrase [Neisseria gonorrhoeae]
YP_207720.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_207721.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_207722.1	Best Blastp Hit: pir||F81845 probable cation-transporting ATPase NMA1539 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380180|emb|CAB84766.1| (AL162756) cation-transporting ATPase [Neisseria meningitidis]; COG2217 Cation transport ATPases
YP_207723.1	Best Blastp Hit: pir||C81097 thioredoxin reductase NMB1324 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226566|gb|AAF41699.1| (AE002480) thioredoxin reductase [Neisseria meningitidis MC58]; COG0492 Thioredoxin reductase/alkyl
YP_207724.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_207725.1	Best Blastp Hit: pir||A81097 primosomal replication protein n, probable NMB1322 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226564|gb|AAF41697.1| (AE002480) primosomal replication protein n,  [Neisseria meningitidis MC58]
YP_207726.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_207727.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_207728.1	Best Blastp Hit: emb|CAB84760.1| (AL162756) conserved hypothetical integral membrane protein [Neisseria meningitidis]; COG0730 Predicted permeases
YP_207729.1	Best Blastp Hit: pir||E81096 CDPdiacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) NMA1532 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226560|gb|AAF41693.1| (AE002480) CDP-diacylglycerol--serine O-phosphatidyltransferse [Neisseria meningitidis MC58] >gi|7380173|emb|CAB84759.1| (AL162756) phosphatidylserine synthase [Neisseria meningitidis]; COG1183 Phosphatidylserine synthase
YP_207730.1	Best Blastp Hit: gb|AAF41692.1| (AE002480) hypothetical protein [Neisseria meningitidis MC58]
YP_207731.1	Best Blastp Hit: pir||E81844 hypothetical protein NMA1529 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380171|emb|CAB84757.1| (AL162756) hypothetical protein [Neisseria meningitidis]
YP_207732.1	Best Blastp Hit: pir||B81096 uracil permease NMB1315 [imported] - Neisseria meningitidis  (group B strain MD58) >gi|7226557|gb|AAF41690.1| (AE002480) uracil permease [Neisseria meningitidis MC58]; COG2233 Xanthine/uracil permeases
YP_207733.1	Best Blastp Hit: pir||A81096 cell division protein FtsK NMB1314 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226556|gb|AAF41689.1| (AE002480) cell division protein FtsK [Neisseria meningitidis MC58]; COG1674 DNA segregation ATPase FtsK/SpoIIIE and
YP_207734.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_207735.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_207736.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_207737.1	Best Blastp Hit: gb|AAF41684.1| (AE002479) fimbrial biogenesis and twitching motility protein,  [Neisseria meningitidis MC58]
YP_207738.1	Best Blastp Hit: pir||B81098 conserved hypothetical protein NMB1308 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226549|gb|AAF41683.1| (AE002479) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0820 Predicted Fe-S-cluster redox enzyme
YP_207739.1	Best Blastp Hit: pir||A81098 nucleoside diphosphate kinase (EC 2.7.4.6) NMA1521 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226548|gb|AAF41682.1| (AE002479) nucleoside diphosphate kinase [Neisseria meningitidis MC58] >gi|7380163|emb|CAB84749.1| (AL162756) nucleoside diphosphate kinase [Neisseria meningitidis]; COG0105 Nucleoside diphosphate kinase
YP_207740.1	Best Blastp Hit: pir||H81097 probable nucleotide-binding protein NMA1520 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226547|gb|AAF41681.1| (AE002479) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7380162|emb|CAB84748.1| (AL162756)  nucleotide-binding protein [Neisseria meningitidis]; COG1485 Predicted ATPase
YP_207741.1	Best Blastp Hit: pir||G81097 esterase, probable NMB1305 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226546|gb|AAF41680.1| (AE002479) esterase,  [Neisseria meningitidis MC58]; COG0627 Predicted esterase
YP_207742.1	Best Blastp Hit: pir||E81097 transcription regulator, MerR family NMB1303 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226544|gb|AAF41678.1| (AE002479) transcriptional regulator, MerR family [Neisseria meningitidis MC58] >gi|7380159|emb|CAB84745.1| (AL162756)  transcriptional regulator [Neisseria meningitidis]; COG0789 Predicted transcriptional regulators
YP_207743.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_207744.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_207745.1	Best Blastp Hit: sp|P57065|KCY_NEIMB cytidylate kinase (CK) (cytidine monophosphate kinase) (CMP KINASE) >gi|11279481|pir||F81099 cytidylate kinase NMB1300 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226540|gb|AAF41675.1| (AE002478) cytidylate kinase [Neisseria meningitidis MC58]; COG0283 Cytidylate kinase
YP_207746.1	Best Blastp Hit: sp|P45320|YG90_HAEIN hypothetical sodium-dependent transporter HI1690 >gi|1075054|pir||H64136 neurotransmitter transport protein homolog - Haemophilus influenzae (strain Rd KW20) >gi|1574543|gb|AAC23336.1| (U32842) sodium-dependent transporter  [Haemophilus influenzae Rd]; COG0733 Sodium-dependent transporters (SNF family)
YP_207747.1	Best Blastp Hit: gb|AAF41674.1| (AE002478) ribosomal small subunit pseudouridine synthase A [Neisseria meningitidis MC58] >gi|7380155|emb|CAB84740.1| (AL162756)  ribosomal small subunit pseudouridine synthase [Neisseria meningitidis]; COG1187 Predicted pseudouridylate synthase 1
YP_207748.1	Best Blastp Hit: pir||D81842 probable membrane bound murein transglycosylase NMA1507 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380154|emb|CAB84739.1| (AL162756)  membrane bound murein transglycosylase [Neisseria meningitidis]; COG0741 Soluble lytic murein transglycosylase and
YP_207749.1	Best Blastp Hit: pir||C81842 hypothetical protein NMA1506 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380153|emb|CAB84738.1| (AL162756) hypothetical protein [Neisseria meningitidis]; COG0500 SAM-dependent methyltransferases
YP_207750.1	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases
YP_207751.1	Best Blastp Hit: sp|Q59601|PLSC_NEIGO 1-acyl-SN-glycerol-3-phosphate acyltransferase (1-AGP acyltransferase) (1-AGPAT) (lysophosphatidic acid acyltransferase) (LPAAT) >gi|2120869|pir||S70545 1-acylglycerol-3-phosphate O-acyltransferase (EC 2.3.1.51) - Neisseria gonorrhoeae >gi|972976|gb|AAB40877.1| (U21806) 1-acyl-sn-glycerol-3-phosphate acyltransferase [Neisseria gonorrhoeae]; COG0204 1-acyl-sn-glycerol-3-phosphate
YP_207752.1	Best Blastp Hit: pir||H81098 hypothetical protein NMB1293 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226534|gb|AAF41669.1| (AE002478) hypothetical protein [Neisseria meningitidis MC58]
YP_207753.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_207754.2	B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA
YP_207756.1	Best Blastp Hit: gb|AAF41662.1| (AE002477) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7380144|emb|CAB84729.1| (AL162756) hypothetical protein [Neisseria meningitidis]
YP_207757.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_207758.1	Best Blastp Hit: pir||C81100 hypothetical protein NMB1284 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226524|gb|AAF41660.1| (AE002477) hypothetical protein [Neisseria meningitidis MC58]
YP_207759.1	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis
YP_207760.1	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)
YP_207763.1	Best Blastp Hit: pir||A81102 transcription-repair coupling factor NMB1281 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226520|gb|AAF41657.1| (AE002476) transcription-repair coupling factor [Neisseria meningitidis MC58]; COG1197 Transcription-repair coupling factor -
YP_207764.1	Best Blastp Hit: emb|CAB84723.1| (AL162756) oxidoreductase [Neisseria meningitidis]
YP_207765.1	Best Blastp Hit: emb|CAB84722.1| (AL162756) hypothetical protein NMA1489 [Neisseria meningitidis]
YP_207766.1	Best Blastp Hit: pir||G81101 membrane-bound lytic murein transglycosylase B, probable NMB1279 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226518|gb|AAF41655.1| (AE002476) membrane-bound lytic murein transglycosylase B,  [Neisseria meningitidis MC58]
YP_207767.1	Best Blastp Hit: pir||F81101 site-specific recombinase NMB1278 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226517|gb|AAF41654.1| (AE002476) site-specific recombinase [Neisseria meningitidis MC58]
YP_207768.1	Best Blastp Hit: pir||G81087 IS1016C2 transposase NMB1411 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226649|gb|AAF41773.1| (AE002489) IS1016C2 transposase [Neisseria meningitidis MC58]
YP_207769.1	Best Blastp Hit: sp|P48371|GYRA_NEIGO DNA gyrase subunit A >gi|2120873|pir||S60779 DNA gyrase chain A - Neisseria gonorrhoeae >gi|529408|gb|AAA82128.1| (U08817) DNA gyrase subunit A [Neisseria gonorrhoeae]; COG0188 DNA gyrase (topoisomerase II) A subunit
YP_207770.1	Best Blastp Hit: gb|AAF62332.1| (AE002486) chaperone protein HscB [Neisseria meningitidis MC58]; COG1076 DnaJ-domain-containing proteins 1
YP_207772.1	Best Blastp Hit: pir||H81089 HesB/YadR/YfhF family protein NMB1381 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226622|gb|AAF41749.1| (AE002486) HesB/YadR/YfhF family protein [Neisseria meningitidis MC58]; COG0316 Uncharacterized ACR, HesB/YadR/YfhF family
YP_207773.1	Best Blastp Hit: pir||G81852 NifU-like protein NMA1596 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380237|emb|CAB84823.1| (AL162756) NifU-like protein [Neisseria meningitidis]; COG0822 NifU homologs involved in Fe-S cluster
YP_207774.1	Best Blastp Hit: pir||I50969 MHC class II beta chain - Melanochromis auratus (fragment) >gi|2147702|pir||I50985 MHC class II beta chain - Melanochromis auratus (fragment) >gi|308982|gb|AAA49352.1| (L17439) Mhc class II beta chain [Melanochromis auratus] >gi|309016|gb|AAA49368.1| (L17463) MHC class II beta chain [Melanochromis auratus]
YP_207775.1	catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis
YP_207776.1	Best Blastp Hit: sp|Q51134|YF93_NEIMA hypothetical protein NMA1593/NMB1378 precursor >gi|11278638|pir||D81852 conserved hypothetical DNA-binding protein NMA1593 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380234|emb|CAB84820.1| (AL162756) conserved hypothetical DNA-binding protein [Neisseria meningitidis] >gi|7413461|gb|AAF62328.1| (AE002486) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1959 Uncharacterized BCR, YjeB/RRF2 family
YP_207778.1	Best Blastp Hit: pir||C81852 L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) NMA1592 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380233|emb|CAB84819.1| (AL162756) L-lactate dehydrogenase [Neisseria meningitidis]; COG1304 L-lactate dehydrogenase (FMN-dependent) and
YP_207779.1	Best Blastp Hit: gb|AAD02478.1| (AF048762) hypothetical membrane lipoprotein [Neisseria meningitidis]; restriction modification system-R protein
YP_207780.1	Best Blastp Hit: possibly phase variable - 37 tandem repeats of CGGT in the coding sequence (ON) and an 8T residue homopolymer repeat in the coding sequence (ON); COG2189 Adenine specific DNA methylase Mod
YP_207781.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_207782.1	Best Blastp Hit: pir||F81851 hypothetical protein NMA1587 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380228|emb|CAB84814.1| (AL162756) hypothetical protein [Neisseria meningitidis]
YP_207783.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_207784.1	binds and unfolds substrates as part of the ClpXP protease
YP_207785.1	DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate
YP_207786.1	Best Blastp Hit: pir||G81090 hypothetical protein NMB1370 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226616|gb|AAF41744.1| (AE002485) hypothetical protein [Neisseria meningitidis MC58]
YP_207787.1	Best Blastp Hit: pir||F81090 hypothetical protein NMB1369 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226615|gb|AAF41743.1| (AE002485) hypothetical protein [Neisseria meningitidis MC58]
YP_207789.1	Best Blastp Hit: gb|AAF41742.1| (AE002485) ATP-dependent RNA helicase,  [Neisseria meningitidis MC58]; COG0513 Superfamily II DNA and RNA helicases
YP_207790.1	Best Blastp Hit: gb|AAF41741.1| (AE002485) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1092 Predicted SAM-dependent methyltransferases
YP_207791.1	Best Blastp Hit: pir||E81850 thioredoxin I NMA1578 [imported] - Neisseria meningitidis  (group A strain Z2491) >gi|7380219|emb|CAB84805.1| (AL162756) thioredoxin I [Neisseria meningitidis]; COG0526 Thiol-disulfide isomerase and thioredoxins
YP_207792.1	Best Blastp Hit: pir||D81850 hypothetical protein NMA1577 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380218|emb|CAB84804.1| (AL162756) hypothetical protein [Neisseria meningitidis]
YP_207793.1	Best Blastp Hit: pir||C81850 NAD+ synthase (glutamine-hydrolyzing) (EC 6.3.5.1) NMA1576 [similarity] - Neisseria meningitidis (group A strain Z2491) >gi|7380217|emb|CAB84803.1| (AL162756) NH(3)-dependent NAD synthetase [Neisseria meningitidis]; COG0171 NAD synthase
YP_207794.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_207795.1	Best Blastp Hit: pir||A81850 probable integral membrane transporter NMA1574 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380215|emb|CAB84801.1| (AL162756)  integral membrane transporter [Neisseria meningitidis]; COG0477 Permeases
YP_207796.1	Best Blastp Hit: pir||B81092 conserved hypothetical protein NMB1361 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226606|gb|AAF41735.1| (AE002484) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1187 Predicted pseudouridylate synthase 1
YP_207797.1	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate
YP_207798.1	Best Blastp Hit: pir||H81091 probable CDP-6-deoxy-Delta(3,4)-glucoseen reductase (EC 1.3.1.-) NMB1359 [similarity] - Neisseria meningitidis  (group B strain MD58) >gi|7226604|gb|AAF41733.1| (AE002484) CDP-6-deoxy-delta-3,4-glucoseen reductase,  [Neisseria meningitidis MC58]; COG0543 2-Octaprenylphenol hydroxylase and related
YP_207799.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_207800.1	Best Blastp Hit: pir||F81091 conserved hypothetical protein NMB1357 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226602|gb|AAF41731.1| (AE002484) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_207801.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_207802.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain
YP_207803.1	Best Blastp Hit: pir||E81093 conserved hypothetical protein NMB1354 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226598|gb|AAF41728.1| (AE002483) conserved hypothetical protein [Neisseria meningitidis MC58]; COG2095 Integral membrane proteins of the MarC
YP_207804.1	Best Blastp Hit: pir||D81093 aldehyde dehydrogenase NMB1353 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226597|gb|AAF41727.1| (AE002483) aldehyde dehydrogenase [Neisseria meningitidis MC58]; COG1012 NAD-dependent aldehyde dehydrogenases
YP_207805.1	Best Blastp Hit: pir||C81093 hypothetical protein NMB1352 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226596|gb|AAF41726.1| (AE002483) hypothetical protein [Neisseria meningitidis MC58] >gi|7380205|emb|CAB84791.1| (AL162756) hypothetical protein [Neisseria meningitidis]
YP_207807.1	Best Blastp Hit: emb|CAB84790.1| (AL162756) SUN-family protein [Neisseria meningitidis]; COG0144 Predicted rRNA methylase
YP_207808.1	Best Blastp Hit: pir||D81848 hypothetical protein NMA1561 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380202|emb|CAB84788.1| (AL162756) hypothetical protein [Neisseria meningitidis]
YP_207809.1	Best Blastp Hit: pir||G81092 RNA methylase, probable NMB1348 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226592|gb|AAF41722.1| (AE002483) RNA methylase,  [Neisseria meningitidis MC58]; COG0565 rRNA methylase
YP_207810.1	Best Blastp Hit: pir||F81092 extragenic suppressor protein SuhB NMB1347 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226591|gb|AAF41721.1| (AE002483) extragenic suppressor protein SuhB [Neisseria meningitidis MC58]; COG0483 Inositol phosphatases
YP_207812.1	Best Blastp Hit: pir||G81087 IS1016C2 transposase NMB1411 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226649|gb|AAF41773.1| (AE002489) IS1016C2 transposase [Neisseria meningitidis MC58]
YP_207813.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_207814.1	Best Blastp Hit: sp|P50183|T2N4_NEILA type II restriction enzyme NLAIV (endonuclease NLAIV) (R.NLAIV) >gi|628599|pir||S43887 restriction endonuclease - Neisseria lactamica >gi|476228|gb|AAA53238.1| (U06074) R.NlaIV [Neisseria lactamica]
YP_207815.1	Best Blastp Hit: possibly phase variable - 9A residue homopolymer repeat in the coding sequence (ON); COG0270 Site-specific DNA methylase dcm
YP_207816.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D
YP_207817.1	Best Blastp Hit: gb|AAF41434.1| (AE002454) hypothetical protein [Neisseria meningitidis MC58] >gi|7380104|emb|CAB84687.1| (AL162756)  lipoprotein [Neisseria meningitidis]
YP_207818.1	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate
YP_207819.1	Best Blastp Hit: pir||H81835 probable glutamate--cysteine ligase (EC 6.3.2.2) NMA1449 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380102|emb|CAB84685.1| (AL162756) glutamate--cysteine ligase [Neisseria meningitidis]
YP_207820.1	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase
YP_207821.1	Best Blastp Hit: pir||B81129 conserved hypothetical protein NMB1039 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226279|gb|AAF41438.1| (AE002454) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1636 Uncharacterized BCR
YP_207822.1	Best Blastp Hit: pir||E81835 probable periplasmic protein NMA1446 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380099|emb|CAB84682.1| (AL162756) periplasmic protein [Neisseria meningitidis]
YP_207823.1	Best Blastp Hit: emb|CAB84681.1| (AL162756) hypothetical protein NMA1445 [Neisseria meningitidis]; COG1159 Predicted GTPases, Era/HflX family
YP_207824.1	Best Blastp Hit: pir||C81835 probable P-type cation-transporting ATPase NMA1444 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380097|emb|CAB84680.1| (AL162756)  P-type cation-transporting ATPase [Neisseria meningitidis]; COG2217 Cation transport ATPases
YP_207825.1	Best Blastp Hit: gb|AAF41441.1| (AE002455) hypothetical protein [Neisseria meningitidis MC58]
YP_207826.1	Best Blastp Hit: gb|AAF41442.1| (AE002455) ferredoxin--NADP reductase [Neisseria meningitidis MC58] >gi|7380095|emb|CAB84678.1| (AL162756)  ferredoxin--NADP reductase [Neisseria meningitidis]; COG1018 Flavodoxin reductases (ferredoxin-NADPH
YP_207827.1	Best Blastp Hit: pir||E81127 hypothetical protein NMB1045 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226285|gb|AAF41443.1| (AE002455) hypothetical protein [Neisseria meningitidis MC58]
YP_207828.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_207829.1	Best Blastp Hit: pir||F81834 probable lipoprotein NMA1439 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380092|emb|CAB84675.1| (AL162756) lipoprotein [Neisseria meningitidis]
YP_207830.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON)
YP_207831.1	Best Blastp Hit: sp|P24328|PERT_BORPA pertactin precursor (outer membrane protein P.70) (P.95) >gi|95503|pir||S15204 pertactin - Bordetella parapertussis >gi|39762|emb|CAA38419.1| (X54547) pertactin [Bordetella parapertussis]
YP_207832.1	Best Blastp Hit: pir||E81103 conserved hypothetical protein NMB1258 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226497|gb|AAF41636.1| (AE002474) conserved hypothetical protein [Neisseria meningitidis MC58]; COG2256 Uncharacterized ATPase related to the
YP_207833.1	Best Blastp Hit: gb|AAG22017.1|AF288038_2 (AF288038)  HsdR [Streptococcus thermophilus]; COG0610 Restriction enzymes type I helicase subunits
YP_207834.1	Best Blastp Hit: pir||G81152 probable DNA-binding protein NMA1039 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226065|gb|AAF41242.1| (AE002436) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379741|emb|CAB84308.1| (AL162754)  DNA-binding protein [Neisseria meningitidis]
YP_207835.1	Best Blastp Hit: gb|AAG22014.1|AF288037_3 (AF288037)  HsdS [Streptococcus thermophilus]; COG0732 Restriction endonuclease S subunits
YP_207836.1	Best Blastp Hit: pir||G69096 hypothetical protein MTH1717 - Methanobacterium thermoautotrophicum (strain Delta H) >gi|2622849|gb|AAB86189.1| (AE000928) unknown [Methanobacterium thermoautotrophicum]
YP_207838.1	Best Blastp Hit: gb|AAG22013.1|AF288037_2 (AF288037)  HsdM [Streptococcus thermophilus]; COG0286 Type I restriction-modification system
YP_207840.1	bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis
YP_207842.1	Best Blastp Hit: gb|AAF41760.1| (AE002488) A/G-specific adenine glycosylase [Neisseria meningitidis MC58]; COG1194 A/G-specific DNA glycosylase
YP_207843.1	Best Blastp Hit: pir||C81088 alcohol dehydrogenase, zinc-containing NMB1395 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226634|gb|AAF41759.1| (AE002488) alcohol dehydrogenase, zinc-containing [Neisseria meningitidis MC58]; COG1065 Zn-dependent oxidoreductases
YP_207845.1	catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate
YP_207846.1	catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate
YP_207847.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_207848.1	Best Blastp Hit: gb|AAF41755.1| (AE002487) oxidoreductase, Sol/DevB family [Neisseria meningitidis MC58] >gi|7380250|emb|CAB84836.1| (AL162756) 6-phosphogluconolactonase [Neisseria meningitidis]; COG0363 Glucosamine-6-phosphate deaminase
YP_207849.1	catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate
YP_207850.1	Best Blastp Hit: pir||D81089 RpiR/YebK/YfhH family protein NMB1389 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226627|gb|AAF41753.1| (AE002487) RpiR/YebK/YfhH family protein [Neisseria meningitidis MC58] >gi|7380248|emb|CAB84834.1| (AL162756)  transcriptional regulator [Neisseria meningitidis]; COG1737 Transcriptional regulators, RpiR family
YP_207851.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_207852.1	Best Blastp Hit: pir||B81089 hypothetical protein NMB1387 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226625|gb|AAF41751.1| (AE002487) hypothetical protein [Neisseria meningitidis MC58]
YP_207853.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON)
YP_207854.1	Best Blastp Hit: emb|CAB84831.1| (AL162756) hypothetical protein [Neisseria meningitidis]
YP_207855.1	Best Blastp Hit: emb|CAB84476.1| (AL162755) hypothetical protein NMA1216 [Neisseria meningitidis]
YP_207856.1	Best Blastp Hit: emb|CAB84476.1| (AL162755) hypothetical protein NMA1216 [Neisseria meningitidis]
YP_207857.1	Best Blastp Hit: gb|AAF41506.1| (AE002461) hypothetical protein [Neisseria meningitidis MC58]
YP_207858.1	Best Blastp Hit: gi|9634072 P2 J homolog; baseplate or base of tail fibre [Enterobacteria phage 186] >gi|3522880|gb|AAC34162.1| (U32222) P2 J homolog; baseplate or base of tail fibre [Enterobacteria phage 186]
YP_207859.1	Best Blastp Hit: dbj|BAA36244.1| (AB008550) orf17; similar to W gene of P2:baseplate [Pseudomonas aeruginosa phage phi CTX]
YP_207860.1	Best Blastp Hit: emb|CAB84478.1| (AL162755) hypothetical protein NMA1218 [Neisseria meningitidis]
YP_207861.1	Best Blastp Hit: pir||G81087 IS1016C2 transposase NMB1411 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226649|gb|AAF41773.1| (AE002489) IS1016C2 transposase [Neisseria meningitidis MC58]
YP_207862.1	Best Blastp Hit: pir||B81890 hypothetical protein NMA1219 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379908|emb|CAB84479.1| (AL162755) hypothetical protein NMA1219 [Neisseria meningitidis]
YP_207863.1	Best Blastp Hit: emb|CAB84480.1| (AL162755) hypothetical protein NMA1220 [Neisseria meningitidis]
YP_207864.1	Best Blastp Hit: gb|AAF41809.1| (AE002495) ferredoxin--NADP reductase [Neisseria meningitidis MC58]; COG1018 Flavodoxin reductases (ferredoxin-NADPH
YP_207866.1	Best Blastp Hit: gb|AAF42108.1| (AE002526) hypothetical protein [Neisseria meningitidis MC58]
YP_207867.1	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_207868.1	Best Blastp Hit: possibly phase variable - two 8A residue homopolymer repeats in the coding sequence (ON); COG0210 Superfamily I DNA and RNA helicases
YP_207869.1	catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis
YP_207870.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_207871.1	Best Blastp Hit: pir||E81082 conserved hypothetical protein NMB1444 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226685|gb|AAF41804.1| (AE002494) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0718 Uncharacterized BCR, YbaB family
YP_207872.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA
YP_207873.1	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
YP_207874.1	Best Blastp Hit: emb|CAB84882.1| (AL162756) hypothetical protein [Neisseria meningitidis]
YP_207875.1	Best Blastp Hit: pir||A81860 probable methyltransferase NMA1653 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380295|emb|CAB84881.1| (AL162756)  methyltransferase [Neisseria meningitidis]; COG0500 SAM-dependent methyltransferases
YP_207876.1	Best Blastp Hit: pir||H81083 hypothetical protein NMB1440 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226681|gb|AAF41801.1| (AE002493) hypothetical protein [Neisseria meningitidis MC58]
YP_207877.1	Best Blastp Hit: pir||G81083 phosphoribosylaminoimidazole carboxylase, catalytic chain NMB1439 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226680|gb|AAF41800.1| (AE002493) phosphoribosylaminoimidazole carboxylase, catalytic subunit [Neisseria meningitidis MC58]; COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR)
YP_207878.1	Best Blastp Hit: emb|CAC03614.1| (AJ272538) hypothetical protein [Kluyvera ascorbata]
YP_207879.1	Best Blastp Hit: pir||C81104 transcription regulator, LuxR family NMB1250 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226490|gb|AAF41630.1| (AE002473) transcriptional regulator, LuxR family [Neisseria meningitidis MC58] >gi|7380078|emb|CAB84659.1| (AL162755)  two-component system response regulator [Neisseria meningitidis]; COG2197 Response regulators consisting of a; nitrite/nitrate two-component system transcriptional response regulator
YP_207880.1	Best Blastp Hit: pir||B81104 nitrate/nitrite sensor protein (EC 2.7.3.-) NMB1249 [similarity] - Neisseria meningitidis (group B strain MD58) >gi|7226489|gb|AAF41629.1| (AE002473) nitrate/nitrite sensory protein NarX,  [Neisseria meningitidis MC58]; COG0642 Sensory transduction histidine kinases; nitrite/nitrate two-component system sensor kinase
YP_207881.1	Best Blastp Hit: emb|CAB84657.1| (AL162755) molybdopterin-guanine dinucleotide biosynthesis protein A [Neisseria meningitidis]; COG0746 Molybdopterin-guanine dinucleotide
YP_207882.2	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_207883.1	Best Blastp Hit: pir||H81910 hypothetical protein NMA1415 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380074|emb|CAB84655.1| (AL162755) hypothetical protein NMA1415 [Neisseria meningitidis]
YP_207884.1	Best Blastp Hit: emb|CAB84654.1| (AL162755) periplasmic protein [Neisseria meningitidis]
YP_207885.1	Best Blastp Hit: pir||A81106 ribulose-phosphate 3-epimerase NMB1244 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226484|gb|AAF41625.1| (AE002472) ribulose-phosphate 3-epimerase [Neisseria meningitidis MC58]; COG0036 Pentose-5-phosphate-3-epimerase
YP_207887.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_207888.1	Best Blastp Hit: pir||G81105 hypothetical protein NMB1242 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226482|gb|AAF41623.1| (AE002472) hypothetical protein [Neisseria meningitidis MC58]
YP_207890.1	catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases
YP_207891.1	Best Blastp Hit: gb|AAF41621.1| (AE002472) ABC transporter ATP-binding protein [Neisseria meningitidis MC58]; COG0488 ATPase components of ABC transporters with
YP_207892.1	Best Blastp Hit: gb|AAF41620.1| (AE002472) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1393 Arsenate reductase, E.coli type
YP_207893.1	Best Blastp Hit: gb|AAF41619.1| (AE002472) peptidyl-prolyl cis-trans isomerase-related protein [Neisseria meningitidis MC58]; COG0760 Parvulin-like peptidyl-prolyl isomerase
YP_207894.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_207896.1	Best Blastp Hit: sp|P57062|LOLC_NEIMB lipoprotein releasing system transmembrane protein LolC >gi|11279734|pir||D81107 conserved hypothetical protein NMB1235 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226474|gb|AAF41616.1| (AE002471) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0577 Predicted permease
YP_207897.1	Best Blastp Hit: sp|P57031|LOLD_NEIMB lipoprotein releasing system ATP-binding protein LolD >gi|11277321|pir||C81107 ABC transporter ATP-binding protein NMB1234 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226473|gb|AAF41615.1| (AE002471) ABC transporter ATP-binding protein [Neisseria meningitidis MC58]; COG1136 ABC-type (unclassified) transport system
YP_207898.1	Best Blastp Hit: gb|AAC14132.1| (AF058330) RecD [Neisseria gonorrhoeae]; COG0507 ATP-dependent exoDNAse (exonuclease V)
YP_207899.1	Best Blastp Hit: gb|AAC82509.1| (U65994) pilin gene inverting protein homolog PivNG [Neisseria gonorrhoeae]
YP_207901.1	Best Blastp Hit: pir||H81106 ATP-dependent proteinase La NMB1231 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226470|gb|AAF41612.1| (AE002471) ATP-dependent protease La [Neisseria meningitidis MC58]; COG0466 ATP-dependent Lon protease, bacterial type
YP_207903.1	Best Blastp Hit: pir||G81106 DNA-binding protein HU-beta NMB1230 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226469|gb|AAF41611.1| (AE002471) DNA-binding protein HU-beta [Neisseria meningitidis MC58] >gi|7380057|emb|CAB84638.1| (AL162755)  DNA-binding protein [Neisseria meningitidis]; COG0776 Histone-like DNA-binding protein; protein DbhA
YP_207904.1	Best Blastp Hit: pir||F81908 probable membrane protein NMA1396 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380056|emb|CAB84637.1| (AL162755) membrane protein [Neisseria meningitidis]
YP_207905.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_207906.1	Best Blastp Hit: pir||D81108 conserved hypothetical protein NMB1227 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226465|gb|AAF41608.1| (AE002470) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_207907.1	Best Blastp Hit: gb|AAF41607.1| (AE002470) ABC transporter ATP-binding protein [Neisseria meningitidis MC58]; COG0488 ATPase components of ABC transporters with
YP_207908.1	Best Blastp Hit: pir||C81908 probable periplasmic protein NMA1391 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380053|emb|CAB84633.1| (AL162755) periplasmic protein [Neisseria meningitidis]
YP_207909.1	Best Blastp Hit: pir||B81108 hypothetical protein NMB1225 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226463|gb|AAF41606.1| (AE002470) hypothetical protein [Neisseria meningitidis MC58]
YP_207912.1	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
YP_207913.1	Best Blastp Hit: pir||A81908 probable membrane protein NMA1383 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380051|emb|CAB84629.1| (AL162755) membrane protein [Neisseria meningitidis]
YP_207914.1	Best Blastp Hit: gb|AAF44771.1|AF235154_1 (AF235154) GNA1220 [Neisseria gonorrhoeae] >gi|7274434|gb|AAF44772.1|AF235155_1 (AF235155) GNA1220 [Neisseria gonorrhoeae] >gi|7274436|gb|AAF44773.1|AF235156_1 (AF235156) GNA1220 [Neisseria gonorrhoeae]; COG0330 Membrane protease subunits
YP_207915.1	Best Blastp Hit: gb|AAF41601.1| (AE002470) transporter  [Neisseria meningitidis MC58]; COG0628 Predicted permease
YP_207917.1	Best Blastp Hit: gb|AAF41600.1| (AE002469) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7380048|emb|CAB84626.1| (AL162755) hypothetical protein NMA1380 [Neisseria meningitidis]
YP_207918.1	lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein
YP_207919.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_207920.1	Best Blastp Hit: sp|P72080|BFRA_NEIMB bacterioferritin A (Bfr A) >gi|11277091|pir||F81110 bacterioferritin A NMB1207 [imported] - Neisseria meningitidis (group B strain MD58) >gi|1673579|gb|AAB18968.1| (U76633) bacterioferritin [Neisseria gonorrhoeae] >gi|7226444|gb|AAF41589.1| (AE002468) bacterioferritin A [Neisseria meningitidis MC58]; COG2193 Bacterioferritin (cytochrome b1)
YP_207921.1	Best Blastp Hit: sp|P56999|BFRB_NEIMA bacterioferritin B (Bfr B) >gi|11277092|pir||E81110 bacterioferritin B NMB1206 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226443|gb|AAF41588.1| (AE002468) bacterioferritin B [Neisseria meningitidis MC58] >gi|7380044|emb|CAB84622.1| (AL162755)  bacterioferritin B [Neisseria meningitidis]; COG2193 Bacterioferritin (cytochrome b1)
YP_207922.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON)
YP_207923.1	Best Blastp Hit: pir||C81110 transcription regulator NMB1204 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226441|gb|AAF41586.1| (AE002468) transcriptional regulator [Neisseria meningitidis MC58] >gi|7380043|emb|CAB84621.1| (AL162755)  transcriptional regulator [Neisseria meningitidis]; COG1396 Predicted transcriptional regulators
YP_207924.1	Best Blastp Hit: pir||B81110 protein-PII uridylyltransferase NMB1203 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226440|gb|AAF41585.1| (AE002468) protein-PII uridylyltransferase [Neisseria meningitidis MC58]
YP_207925.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_207927.1	Best Blastp Hit: pir||G81109 ribonuclease II family protein NMB1200 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226437|gb|AAF41582.1| (AE002468) ribonuclease II family protein [Neisseria meningitidis MC58]; COG0557 Exoribonucleases
YP_207928.1	Best Blastp Hit: emb|CAB84478.1| (AL162755) hypothetical protein NMA1218 [Neisseria meningitidis]
YP_207929.1	Best Blastp Hit: pir||H81111 GTP-binding protein TypA NMB1199 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226435|gb|AAF41581.1| (AE002467) GTP-binding protein TypA [Neisseria meningitidis MC58]; COG1217 Membrane GTPase
YP_207930.1	Best Blastp Hit: pir||C81906 hypothetical protein NMA1369 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380037|emb|CAB84615.1| (AL162755) hypothetical protein NMA1369 [Neisseria meningitidis]; COG0063 Predicted sugar kinase
YP_207931.1	Best Blastp Hit: pir||F81111 nickel-dependent hydrogenase, b-type cytochrome chain NMB1196, NMB1158 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226395|gb|AAF41544.1| (AE002464) nickel-dependent hydrogenase, b-type cytochrome subunit [Neisseria meningitidis MC58] >gi|7226433|gb|AAF41579.1| (AE002467) nickel-dependent hydrogenase, b-type cytochrome subunit [Neisseria meningitidis MC58]
YP_207932.1	Best Blastp Hit: >gi|11354227|pir||T46867 uroporphyrin-III C-methyltransferase (EC 2.1.1.107) [imported] - Neisseria meningitidis gi|1752671|emb|CAA71251.1| (Y10177) sirohaem synthase [Neisseria meningitidis]
YP_207933.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_207934.1	Best Blastp Hit: gb|AAA47469.1| (M57505) ORF3 [Pseudorabies virus]
YP_207935.1	Best Blastp Hit: gb|AAF41535.1| (AE002463) hypothetical protein [Neisseria meningitidis MC58] >gi|7226423|gb|AAF41570.1| (AE002466) hypothetical protein [Neisseria meningitidis MC58]
YP_207936.1	Best Blastp Hit: pir||B81117 hypothetical protein NMB1147, NMB1185 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226384|gb|AAF41534.1| (AE002463) hypothetical protein [Neisseria meningitidis MC58] >gi|7226422|gb|AAF41569.1| (AE002466) hypothetical protein [Neisseria meningitidis MC58]
YP_207937.1	Best Blastp Hit: pir||A81117 biotin synthetase NMB1146, NMB1184 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226383|gb|AAF41533.1| (AE002463) biotin synthetase [Neisseria meningitidis MC58] >gi|7226421|gb|AAF41568.1| (AE002466) biotin synthetase [Neisseria meningitidis MC58]; COG0502 Biotin synthase and related enzymes
YP_207938.1	Best Blastp Hit: emb|CAB84603.1| (AL162755) hypothetical protein NMA1357 [Neisseria meningitidis]
YP_207939.1	Best Blastp Hit: pir||F81904 probable UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase (EC 6.3.2.-) NMA1356 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380024|emb|CAB84602.1| (AL162755) UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase [Neisseria meningitidis]; COG0773 UDP-N-acetylmuramate-alanine ligase
YP_207940.1	Best Blastp Hit: pir||G81116 hypothetical protein NMB1144, NMB1182 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226381|gb|AAF41531.1| (AE002463) hypothetical protein [Neisseria meningitidis MC58] >gi|7226419|gb|AAF41566.1| (AE002466) hypothetical protein [Neisseria meningitidis MC58]
YP_207941.1	Best Blastp Hit: pir||T26843 hypothetical protein Y43F4B.5 - Caenorhabditis elegans >gi|3880930|emb|CAA16334.1| (AL021481) contains similarity to Pfam domain: PF00408 (Phosphoglucomutase/phosphomannomutase), Score=3.3, E-value=4.3e-11, N=1; cDNA EST EMBL:M89080 comes from this gene; cDNA EST EMBL:T00805 comes from this gene; cDNA EST EMBL:T00831 comes from this gen>
YP_207942.1	Best Blastp Hit: emb|CAB84598.1| (AL162755)  RNA methyltransferase [Neisseria meningitidis]; COG0566 rRNA methylases
YP_207943.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); COG0037 Predicted ATPases of the PP-loop superamily
YP_207944.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein
YP_207945.1	Best Blastp Hit: pir||A81119 conserved hypothetical protein NMB1138, NMB1176, NMA1348 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226375|gb|AAF41526.1| (AE002462) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7226413|gb|AAF41561.1| (AE002465) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7380017|emb|CAB84595.1| (AL162755) hypothetical protein NMA1348 [Neisseria meningitidis]; COG1188 Predicted small RNA-binding protein (S4
YP_207946.1	Best Blastp Hit: gb|AAF41525.1| (AE002462) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7226412|gb|AAF41560.1| (AE002465) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7380016|emb|CAB84594.1| (AL162755) hypothetical protein NMA1347 [Neisseria meningitidis]
YP_207947.1	Best Blastp Hit: pir||E81118 ferredoxin [2Fe-2S] NMB1134, NMB1172, NMA1344 [similarity] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226371|gb|AAF41522.1| (AE002462) ferredoxin, 2Fe-2S type [Neisseria meningitidis MC58] >gi|7226409|gb|AAF41557.1| (AE002465) ferredoxin, 2Fe-2S type [Neisseria meningitidis MC58] >gi|7380014|emb|CAB84592.1| (AL162755)  ferredoxin [Neisseria meningitidis]; COG0633 Ferredoxin
YP_207948.1	Best Blastp Hit: emb|CAB84591.1| (AL162755) hypothetical protein NMA1343 [Neisseria meningitidis]
YP_207949.1	Best Blastp Hit: emb|CAB84590.1| (AL162755) hypothetical protein NMA1341 [Neisseria meningitidis]
YP_207950.1	Best Blastp Hit: gb|AAF41523.1| (AE002462) hypothetical protein [Neisseria meningitidis MC58] >gi|7226410|gb|AAF41558.1| (AE002465) hypothetical protein [Neisseria meningitidis MC58]
YP_207951.1	involved in the maturation of iron-sulfur cluster-containing proteins
YP_207952.1	Best Blastp Hit: pir||A81118 phytoene synthase, probable NMB1130, NMB1168 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226367|gb|AAF41518.1| (AE002462) phytoene synthase, [Neisseria meningitidis MC58] >gi|7226405|gb|AAF41553.1| (AE002465) phytoene synthase,  [Neisseria meningitidis MC58]; COG1562 Phytoene/squalene synthetase
YP_207953.1	Best Blastp Hit: gb|AAF41516.1| (AE002462) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7226403|gb|AAF41551.1| (AE002465) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_207954.1	Best Blastp Hit: emb|CAB84586.1| (AL162755) oxidoreductase [Neisseria meningitidis]; COG1028 Dehydrogenases with different specificities
YP_207955.1	Best Blastp Hit: gb|AAF41514.1| (AE002461) hypothetical protein [Neisseria meningitidis MC58] >gi|7226400|gb|AAF41549.1| (AE002464) hypothetical protein [Neisseria meningitidis MC58] >gi|7380007|emb|CAB84585.1| (AL162755)  periplasmic protein [Neisseria meningitidis]; COG1462 Uncharacterized protein CsgG involved
YP_207956.1	Best Blastp Hit: gb|AAF44774.1|AF235157_1 (AF235157) GNA1162 [Neisseria gonorrhoeae] >gi|7274440|gb|AAF44775.1|AF235158_1 (AF235158) GNA1162 [Neisseria gonorrhoeae] >gi|7274442|gb|AAF44776.1|AF235159_1 (AF235159) GNA1162 [Neisseria gonorrhoeae]
YP_207957.1	Best Blastp Hit: gb|AAF41511.1| (AE002461) hypothetical protein [Neisseria meningitidis MC58] >gi|7226397|gb|AAF41546.1| (AE002464) hypothetical protein [Neisseria meningitidis MC58]
YP_207958.1	Best Blastp Hit: pir||B81896 hypothetical protein NMA1279 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379956|emb|CAB84531.1| (AL162755) hypothetical protein NMA1279 [Neisseria meningitidis]; COG0593 ATPase involved in DNA replication
YP_207959.1	Best Blastp Hit: emb|CAB84530.1| (AL162755) hypothetical protein NMA1278 [Neisseria meningitidis]; COG0560 Phosphoserine phosphatase
YP_207961.1	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate
YP_207962.1	Best Blastp Hit: pir||F81895 hypothetical protein NMA1274 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379952|emb|CAB84527.1| (AL162755) hypothetical protein NMA1274 [Neisseria meningitidis]
YP_207963.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_207964.1	Best Blastp Hit: gb|AAF41466.1| (AE002457) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_207965.1	catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis
YP_207966.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_207967.1	Best Blastp Hit: pir||E81125 cell division protein FtsK NMB1067 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226307|gb|AAF41463.1| (AE002457) cell division protein FtsK [Neisseria meningitidis MC58]; COG1674 DNA segregation ATPase FtsK/SpoIIIE and
YP_207968.1	Best Blastp Hit: pir||G81894 probable integral membrane protein NMA1265 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379945|emb|CAB84520.1| (AL162755)  integral membrane protein [Neisseria meningitidis]
YP_207969.1	may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling
YP_207971.1	Best Blastp Hit: pir||A81127 dihydroneopterin aldolase NMB1063 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226302|gb|AAF41459.1| (AE002456) dihydroneopterin aldolase [Neisseria meningitidis MC58]; COG1539 Dihydroneopterin aldolase
YP_207972.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); COG0344 Predicted membrane protein, YgiH/UPF0078
YP_207973.1	Best Blastp Hit: pir||G81126 conserved hypothetical protein NMB1061 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226300|gb|AAF41457.1| (AE002456) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_207976.1	catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate
YP_207977.1	Best Blastp Hit: gb|AAF41455.1| (AE002456) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379938|emb|CAB84513.1| (AL162755) hypothetical protein NMA1258 [Neisseria meningitidis]
YP_207978.1	Best Blastp Hit: gb|AAF41453.1| (AE002456) hypothetical protein [Neisseria meningitidis MC58]
YP_207979.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_207980.1	Best Blastp Hit: pir||F81234 conserved hypothetical protein NMB0121 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225338|gb|AAF40580.1| (AE002371) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_207981.1	Best Blastp Hit: emb|CAB45007.1| (AJ242839) OpcA protein [Neisseria gonorrhoeae]; class 5 outer membrane protein
YP_207982.1	Best Blastp Hit: pir||D81128 dedA protein NMB1052 [imported] - Neisseria meningitidis  (group B strain MD58, group A strain Z2491) >gi|7226292|gb|AAF41450.1| (AE002455) dedA protein [Neisseria meningitidis MC58] >gi|7379932|emb|CAB84505.1| (AL162755) DedA protein ortholog [Neisseria meningitidis]; COG0586 Uncharacterized membrane-associated protein
YP_207983.1	Best Blastp Hit: emb|CAB45011.1| (AJ242839) ATP-binding protein [Neisseria gonorrhoeae]; COG0488 ATPase components of ABC transporters with; AbcZ
YP_207984.1	Best Blastp Hit: emb|CAB45013.1| (AJ242839) hypothetical protein [Neisseria gonorrhoeae]
YP_207985.1	with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine
YP_207986.1	Best Blastp Hit: emb|CAB44950.1| (AJ242840) DNA modification methylase [Neisseria gonorrhoeae] >gi|5262959|emb|CAB45015.2| (AJ242839) DNA modification methylase [Neisseria gonorrhoeae]; COG0270 Site-specific DNA methylase dcm; DcmD
YP_207987.1	Best Blastp Hit: sp|P31032|T2NM_NEIGO type II restriction enzyme NgoI (endonuclease NgomI) (R.NGOMI) >gi|281723|pir||B42709 DNA restriction endonuclease NgoMI - Neisseria gonorrhoeae >gi|5051443|emb|CAB44951.1| (AJ242840)  DNA restriction endonuclease [Neisseria gonorrhoeae] >gi|5262960|emb|CAB45874.1| (AJ242839)  DNA restriction endonuclease [Neisseria gonorrhoeae]
YP_207988.1	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway
YP_207989.1	Best Blastp Hit: gb|AAF41418.1| (AE002452) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0454 Predicted acetyltransferases
YP_207990.1	Best Blastp Hit: dbj|BAA82522.1| (AB030007) tunicate retinoic acid-inducible modular protease [Polyandrocarpa misakiensis]
YP_207992.1	Best Blastp Hit: pir||B81892 hypothetical protein NMA1237 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379924|emb|CAB84495.1| (AL162755) hypothetical protein NMA1237 [Neisseria meningitidis]
YP_207993.1	Best Blastp Hit: gb|AAA96489.1| (L36381) orfB; [Neisseria gonorrhoeae]
YP_207995.1	Best Blastp Hit: emb|CAB84830.1| (AL162756) transposase fragment [Neisseria meningitidis]
YP_207996.1	Best Blastp Hit: pir||H81133 rubredoxin NMB0993 [imported] - Neisseria meningitidis  (group B strain MD58, group A strain Z2491) >gi|7226233|gb|AAF41396.1| (AE002450) rubredoxin [Neisseria meningitidis MC58] >gi|7379892|emb|CAB84462.1| (AL162755)  rubredoxin [Neisseria meningitidis]; COG1773 Rubredoxin
YP_207997.1	Best Blastp Hit: emb|CAB84463.1| (AL162755) acyl-CoA dehydrogenase [Neisseria meningitidis]; COG1960 Acyl-CoA dehydrogenases
YP_207998.1	Best Blastp Hit: emb|CAB84464.1| (AL162755) hypothetical protein NMA1203 [Neisseria meningitidis]
YP_207999.1	Best Blastp Hit: gb|AAF41399.1| (AE002450) hypothetical protein [Neisseria meningitidis MC58] >gi|7379895|emb|CAB84465.1| (AL162755) hypothetical protein NMA1204 [Neisseria meningitidis]
YP_208001.1	component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent
YP_208002.1	Best Blastp Hit: pir||S52906 virion protein j13L - African swine fever virus >gi|695432|emb|CAA59319.1| (X84893) j13L [African swine fever virus]
YP_208004.1	Best Blastp Hit: emb|CAB84467.1| (AL162755) oxidoreductase [Neisseria meningitidis]; COG0247 Fe-S oxidoreductases
YP_208005.1	Best Blastp Hit: pir||H81888 hypothetical protein NMA1207 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379898|emb|CAB84468.1| (AL162755) hypothetical protein NMA1207 [Neisseria meningitidis]; COG0042 Predicted TIM-barrel enzymes, possibly
YP_208006.1	Best Blastp Hit: emb|CAB84469.1| (AL162755) hypothetical protein NMA1208 [Neisseria meningitidis]
YP_208009.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_208010.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_208011.1	Best Blastp Hit: emb|CAB84873.1| (AL162756) lipoprotein [Neisseria meningitidis]; COG0791 Cell wall-associated hydrolases
YP_208012.1	Best Blastp Hit: emb|CAB84874.1| (AL162756) phopholipase D-family protein [Neisseria meningitidis]; COG1502 Cardiolipin synthase, phoaphatidylserine
YP_208013.1	Best Blastp Hit: emb|CAB84875.1| (AL162756) integral membrane protein [Neisseria meningitidis]; COG0477 Permeases; aminoglycoside resistance efflux transporter protein
YP_208014.1	Best Blastp Hit: pir||D81859 conserved hypothetical protein NMA1648 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380290|emb|CAB84876.1| (AL162756) conserved hypothetical protein [Neisseria meningitidis]; COG0247 Fe-S oxidoreductases
YP_208015.1	Best Blastp Hit: emb|CAB84877.1| (AL162756) conserved hypothetical protein [Neisseria meningitidis]; COG1556 Uncharacterized ACR, YkgG family
YP_208016.1	Best Blastp Hit: pir||F81859 conserved hypothetical iron-sulfur protein NMA1650 [similarity] - Neisseria meningitidis (group A strain Z2491) >gi|7380292|emb|CAB84878.1| (AL162756) conserved hypothetical iron-sulphur protein [Neisseria meningitidis]; COG1139 Uncharacterized conserved protein containing
YP_208017.1	Best Blastp Hit: gb|AAF19189.1|AF200716_2 (AF200716) trafficking protein B [Neisseria gonorrhoeae]
YP_208018.1	Best Blastp Hit: gb|AAF19188.1|AF200716_1 (AF200716) trafficking protein A [Neisseria gonorrhoeae]
YP_208019.1	Best Blastp Hit: gb|AAA96489.1| (L36381) orfB; [Neisseria gonorrhoeae]
YP_208020.1	Catalyzes the only substrate-level phosphorylation in the TCA cycle
YP_208021.1	catalyzes the interconversion of succinyl-CoA and succinate
YP_208022.1	Best Blastp Hit: gb|AAF41364.1| (AE002447) hypothetical protein [Neisseria meningitidis MC58] >gi|7379845|emb|CAB84414.1| (AL162755)  membrane protein [Neisseria meningitidis]
YP_208023.1	E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_208024.1	component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA
YP_208025.1	SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide
YP_208026.1	type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH
YP_208027.1	Best Blastp Hit: gb|AAF41358.1| (AE002446) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379840|emb|CAB84409.1| (AL162755) hypothetical protein NMA1147 [Neisseria meningitidis]
YP_208028.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase
YP_208029.1	Best Blastp Hit: pir||D81881 probable succinate dehydrogenase (EC 1.3.99.1) flavoprotein NMA1145 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379838|emb|CAB84407.1| (AL162755)  succinate dehydrogenase flavoprotein subunit [Neisseria meningitidis]; COG1053 Succinate dehydrogenase/fumarate reductase
YP_208030.1	Best Blastp Hit: pir||E81138 succinate dehydrogenase, hydrophobic membrane anchor protein NMB0949 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226188|gb|AAF41355.1| (AE002446) succinate dehydrogenase, hydrophobic membrane anchor protein [Neisseria meningitidis MC58]; COG2142 Cytochrome b subunit of fumarate reductase
YP_208031.1	Best Blastp Hit: pir||D81138 succinate dehydrogenase, cytochrome b556 chain NMB0948 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226187|gb|AAF41354.1| (AE002446) succinate dehydrogenase, cytochrome b556 subunit [Neisseria meningitidis MC58] >gi|7379836|emb|CAB84405.1| (AL162755)  succinate dehydrogenase cytochrome B subunit [Neisseria meningitidis]; COG2009 Cytochrome b subunit of succinate
YP_208033.1	Catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_208034.1	Best Blastp Hit: gb|AAF41352.1| (AE002445) peroxiredoxin 2 family protein/glutaredoxin [Neisseria meningitidis MC58] >gi|7379834|emb|CAB84403.1| (AL162755) redoxin [Neisseria meningitidis]; COG0678 Peroxiredoxin
YP_208035.1	Best Blastp Hit: gb|AAF41351.1| (AE002445) hypothetical protein [Neisseria meningitidis MC58]
YP_208036.1	catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine
YP_208037.1	MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor
YP_208038.1	RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_208039.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif
YP_208040.1	Best Blastp Hit: gb|AAA53170.1| (U00415) gp120 [Human immunodeficiency virus type 1]
YP_208041.1	Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine
YP_208042.1	Best Blastp Hit: pir||B81880 hypothetical protein NMA1135 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379828|emb|CAB84397.1| (AL162755) hypothetical protein NMA1135 [Neisseria meningitidis]
YP_208043.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_208044.1	Best Blastp Hit: pir||G81879 hypothetical protein NMA1132 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379825|emb|CAB84394.1| (AL162755) hypothetical protein NMA1132 [Neisseria meningitidis]
YP_208045.1	Best Blastp Hit: pir||F81879 probable membrane protein NMA1131 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379824|emb|CAB84393.1| (AL162755) membrane protein [Neisseria meningitidis]
YP_208047.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_208048.1	Best Blastp Hit: gb|AAF41340.1| (AE002444) cytidine and deoxycytidylate deaminase [Neisseria meningitidis MC58]; COG0590 Cytosine deaminase-related enzymes
YP_208049.1	Best Blastp Hit: gb|AAF41339.1| (AE002444) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_208050.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_208051.1	Best Blastp Hit: pir||C81141 hypothetical protein NMB0928 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226166|gb|AAF41335.1| (AE002444) hypothetical protein [Neisseria meningitidis MC58]
YP_208052.1	Best Blastp Hit: sp|P42786|PIP_NEIGO proline iminopeptidase (prolyl aminopeptidase) >gi|1073191|pir||S39592 prolyl aminopeptidase (EC 3.4.11.5) - Neisseria gonorrhoeae >gi|396840|emb|CAA80948.1| (Z25461) proline iminopeptidase Pip [Neisseria gonorrhoeae]; COG0596 Predicted hydrolases or acyltransferases
YP_208054.1	Best Blastp Hit: emb|CAB84928.1| (AL162756)  outer membrane substrate binding protein [Neisseria meningitidis]; COG1629 Outer membrane receptor proteins, mostly Fe
YP_208057.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.
YP_208059.1	RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs
YP_208060.1	Best Blastp Hit: emb|CAB84931.1| (AL162756) conserved hypothetical protein [Neisseria meningitidis]; COG0589 Universal stress protein UspA and related
YP_208061.1	Best Blastp Hit: gb|AAF41857.1| (AE002499) HesA/MoeB/ThiF family protein [Neisseria meningitidis MC58]; COG1179 Dinucleotide-utilizing enzymes involved in
YP_208062.1	Best Blastp Hit: pir||D81075 conserved hypothetical protein NMB1504 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226747|gb|AAF41860.1| (AE002500) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1354 Uncharacterized ACR
YP_208063.1	catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate
YP_208064.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_208065.1	Best Blastp Hit: gb|AAF41506.1| (AE002461) hypothetical protein [Neisseria meningitidis MC58]
YP_208066.1	Best Blastp Hit: pir||A81076 amino acid ABC transporter permease NMB1509 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226752|gb|AAF41865.1| (AE002500) amino acid ABC transporter permease [Neisseria meningitidis MC58] >gi|7380350|emb|CAB84937.1| (AL162756) binding-protein-dependent transport systems inner membrane protein [Neisseria meningitidis]; COG0765 Amino acid ABC transporter permease
YP_208067.1	Best Blastp Hit: gb|AAF41866.1| (AE002500) thermonuclease [Neisseria meningitidis MC58] >gi|7380351|emb|CAB84938.1| (AL162756)  nuclease [Neisseria meningitidis]; COG1525 Micrococcal nuclease (thermonuclease)
YP_208068.1	Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway
YP_208069.1	catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
YP_208070.1	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers
YP_208071.1	Best Blastp Hit: pir||E81867 DNA-directed DNA polymerase (EC 2.7.7.7) III epsilon chain NMA1714 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380355|emb|CAB84942.1| (AL162756) DNA polymerase III, epsilon chain [Neisseria meningitidis]; COG0847 DNA polymerase III epsilon subunit
YP_208072.1	Best Blastp Hit: pir||B81074 transporter probable NMB1515 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226759|gb|AAF41871.1| (AE002501) transporter  [Neisseria meningitidis MC58]
YP_208073.1	Best Blastp Hit: gb|AAF41872.1| (AE002501) fixS protein [Neisseria meningitidis MC58] >gi|7380357|emb|CAB84944.1| (AL162756)  inner membrane protein [Neisseria meningitidis]; nitrogen fixation protein
YP_208074.1	Best Blastp Hit: gb|AAF41873.1| (AE002501) hypothetical protein [Neisseria meningitidis MC58] >gi|7380358|emb|CAB84945.1| (AL162756) hypothetical protein [Neisseria meningitidis]
YP_208075.1	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA
YP_208076.1	two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm
YP_208077.1	Best Blastp Hit: pir||C81868 hypothetical protein NMA1720 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380361|emb|CAB84948.1| (AL162756) hypothetical protein [Neisseria meningitidis]
YP_208078.1	Best Blastp Hit: emb|CAB84949.1| (AL162756) transferase [Neisseria meningitidis]; COG1562 Phytoene/squalene synthetase
YP_208079.1	Best Blastp Hit: gb|AAF41878.1| (AE002501) FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [Neisseria meningitidis MC58] >gi|7380363|emb|CAB84950.1| (AL162756)  peptidyl-prolyl isomerase [Neisseria meningitidis]; COG1047 FKBP-type peptidyl-prolyl cis-trans
YP_208081.1	outer membrane protein H.8
YP_208082.1	Best Blastp Hit: pir||G81868 hypothetical protein NMA1724 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380365|emb|CAB84952.1| (AL162756) hypothetical protein [Neisseria meningitidis]; COG0277 FAD/FMN-containing dehydrogenases
YP_208083.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_208084.1	Best Blastp Hit: pir||S61299 lipopolysaccharide heptosyltransferase (EC 2.4.99.-) II rfaF [similarity] - Neisseria gonorrhoeae >gi|599920|emb|CAA85504.1| (Z37141) ADP-heptose:LPS heptosyltransferase II [Neisseria gonorrhoeae]; COG0859 ADP-heptose: LPS heptosyltransferase; RfaF protein
YP_208085.1	Best Blastp Hit: emb|CAB84956.1| (AL162756) methylated-DNA-protein-cysteine methyltransferase [Neisseria meningitidis]; COG0350 Methylated DNA-protein cysteine
YP_208086.1	Best Blastp Hit: sp|P77634|YBCM_ECOLI hypothetical transcriptional regulator in EMRE-RUS intergenic region >gi|7467042|pir||H64786 ybcM protein - Escherichia coli >gi|1778460|gb|AAB40743.1| (U82598) hypothetical protein [Escherichia coli] >gi|1786758|gb|AAC73647.1| (AE000160) ARAC-type regulatory protein [Escherichia coli]; COG2207 AraC-type DNA-binding domain-containing
YP_208087.1	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.
YP_208088.1	Best Blastp Hit: pir||G81071 conserved hypothetical protein NMB1531 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226776|gb|AAF41886.1| (AE002503) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7380373|emb|CAB84959.1| (AL162757) conserved hypothetical protein [Neisseria meningitidis]
YP_208089.1	Best Blastp Hit: pir||H81071 conserved hypothetical protein NMB1532 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226777|gb|AAF41887.1| (AE002503) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_208090.1	Best Blastp Hit: sp|P07212|H8_NEIMC H.8 outer membrane protein precursor >gi|279443|pir||AZNHM azurin precursor - Neisseria meningitidis >gi|45042|emb|CAA68589.1| (Y00530) outer membrane protein H.8 (AA 1-183) [Neisseria meningitidis]; lipid modified azurin protein
YP_208091.1	Best Blastp Hit: pir||F81797 hypothetical protein NMA1734 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380376|emb|CAB84962.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208092.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_208093.1	synthesizes RNA primers at the replication forks
YP_208094.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria
YP_208095.1	Best Blastp Hit: pir||F72596 hypothetical protein APE1239 - Aeropyrum pernix (strain K1) >gi|5104914|dbj|BAA80228.1| (AP000061) 221aa long hypothetical protein [Aeropyrum pernix]
YP_208096.1	Best Blastp Hit: dbj|BAB04059.1| (AP001508) unknown [Bacillus halodurans]
YP_208098.1	Best Blastp Hit: dbj|BAB04058.1| (AP001508) unknown conserved protein in others [Bacillus halodurans]
YP_208101.1	Best Blastp Hit: emb|CAB84830.1| (AL162756) transposase fragment [Neisseria meningitidis]
YP_208102.1	Best Blastp Hit: gi|9633475 hypothetical protein [Bacteriophage VT2-Sa] >gi|5881671|dbj|BAA84362.1| (AP000363) hypothetical protein [Bacteriophage VT2-Sa]
YP_208103.1	Best Blastp Hit: pir||A81123 hypothetical protein NMB1087 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226325|gb|AAF41479.1| (AE002459) hypothetical protein [Neisseria meningitidis MC58]
YP_208104.1	Best Blastp Hit: gb|AAF41415.1| (AE002452) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_208106.1	Best Blastp Hit: dbj|BAB06568.1| (AP001516) GTP pyrophosphokinase [Bacillus halodurans]
YP_208108.1	Best Blastp Hit: pir||H81130 transcription regulator NMB1007 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226247|gb|AAF41408.1| (AE002452) transcriptional regulator [Neisseria meningitidis MC58]; COG1396 Predicted transcriptional regulators
YP_208109.1	Best Blastp Hit: gb|AAF41406.1| (AE002451) hypothetical protein [Neisseria meningitidis MC58]
YP_208110.1	Best Blastp Hit: gb|AAF41404.1| (AE002451) hypothetical protein [Neisseria meningitidis MC58]
YP_208112.1	Best Blastp Hit: pir||F81861 hypothetical protein NMA1666 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380308|emb|CAB84894.1| (AL162756) hypothetical protein [Neisseria meningitidis]; COG2070 Dioxygenases related to 2-nitropropane
YP_208113.1	Best Blastp Hit: pir||G81861 probable inner membrane protein NMA1667 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380309|emb|CAB84895.1| (AL162756)  inner membrane protein [Neisseria meningitidis]
YP_208114.1	Best Blastp Hit: gb|AAF41813.1| (AE002495) ferredoxin, 4Fe-4S bacterial type [Neisseria meningitidis MC58]; COG0348 Polyferredoxin
YP_208115.1	Best Blastp Hit: gb|AAF41815.1| (AE002495) hypothetical protein [Neisseria meningitidis MC58]
YP_208116.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_208117.1	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
YP_208118.1	Best Blastp Hit: gb|AAF41818.1| (AE002495) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0697 Predicted permeases
YP_208119.1	Best Blastp Hit: pir||A81080 single-strand binding protein NMB1460 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226702|gb|AAF41819.1| (AE002496) single-strand binding protein [Neisseria meningitidis MC58] >gi|7380314|emb|CAB84900.1| (AL162756) single-stranded binding protein [Neisseria meningitidis]; COG0629 Single-stranded DNA-binding protein
YP_208120.1	Best Blastp Hit: pir||B81080 drug resistance translocase NMB1461 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226703|gb|AAF41820.1| (AE002496) drug resistance translocase [Neisseria meningitidis MC58]; COG0477 Permeases
YP_208121.1	Best Blastp Hit: pir||C81080 transglycosylase, probable NMB1462 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226704|gb|AAF41821.1| (AE002496) transglycosylase,  [Neisseria meningitidis MC58]; COG0741 Soluble lytic murein transglycosylase and
YP_208122.1	Best Blastp Hit: gb|AAF42457.1| (AE002563) hypothetical protein [Neisseria meningitidis MC58]
YP_208124.1	Best Blastp Hit: gb|AAF41823.1| (AE002496) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_208125.1	Best Blastp Hit: pir||B81863 exopolyphosphatase (EC 3.6.1.-) NMA1679 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380320|emb|CAB84907.1| (AL162756) exopolyphosphatase [Neisseria meningitidis]; COG0248 Exopolyphosphatase
YP_208126.1	Best Blastp Hit: pir||C81863 probable membrane protein NMA1680 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380321|emb|CAB84908.1| (AL162756) membrane protein [Neisseria meningitidis]
YP_208128.1	Best Blastp Hit: pir||A81081 hypothetical protein NMB1470 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226710|gb|AAF41827.1| (AE002496) hypothetical protein [Neisseria meningitidis MC58]
YP_208129.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_208130.1	Best Blastp Hit: pir||F81863 ClpB protein NMA1683 [imported] - Neisseria meningitidis  (group A strain Z2491) >gi|7380324|emb|CAB84911.1| (AL162756) ClpB protein [Neisseria meningitidis]; COG0542 ATPases with chaperone activity, ATP-binding
YP_208131.1	broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor
YP_208132.1	Best Blastp Hit: pir||H81078 4-oxalocrotonate tautomerase, probable NMB1474 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226715|gb|AAF41831.1| (AE002497) 4-oxalocrotonate tautomerase,  [Neisseria meningitidis MC58] >gi|7380326|emb|CAB84913.1| (AL162756)  tautomerase [Neisseria meningitidis]; COG1942 Uncharacterized protein
YP_208133.1	Best Blastp Hit: pir||A81079 conserved hypothetical protein NMB1475 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226716|gb|AAF41832.1| (AE002497) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_208135.1	catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate
YP_208136.1	binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities
YP_208137.1	Best Blastp Hit: emb|CAB84918.1| (AL162756) hypothetical protein [Neisseria meningitidis]
YP_208138.1	Best Blastp Hit: pir||G81079 acyl CoA thioester hydrolase NMB1482 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226722|gb|AAF41838.1| (AE002497) acyl CoA thioester hydrolase [Neisseria meningitidis MC58]; COG1607 Acyl-CoA hydrolase
YP_208139.1	Best Blastp Hit: gb|AAF41839.1| (AE002497) lipoprotein NlpD,  [Neisseria meningitidis MC58]; COG0739 Membrane proteins related to
YP_208140.1	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate
YP_208141.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); COG0861 Membrane protein TerC, possibly involved in
YP_208142.1	Best Blastp Hit: pir||E81077 fimbrial assembly protein NMB1487 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226728|gb|AAF41843.1| (AE002498) fimbrial assembly protein [Neisseria meningitidis MC58]
YP_208143.1	Best Blastp Hit: pir||C81865 succinate-semialdehyde dehydrogenase (NAD(P)+) (EC 1.2.1.16) NMA1696 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380337|emb|CAB84924.1| (AL162756) succinate semialdehyde dehydrogenase [Neisseria meningitidis]; COG1012 NAD-dependent aldehyde dehydrogenases
YP_208144.1	Best Blastp Hit: pir||D81193 hypothetical protein NMB0488 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225715|gb|AAF40923.1| (AE002405) hypothetical protein [Neisseria meningitidis MC58]
YP_208145.1	Best Blastp Hit: emb|CAB84925.1| (AL162756) lipoprotein [Neisseria meningitidis]
YP_208146.1	Best Blastp Hit: pir||C81078 carbon starvation protein A homolog NMB1493 [similarity] - Neisseria meningitidis (group B strain MD58) >gi|7226734|gb|AAF41849.1| (AE002498) carbon starvation protein A [Neisseria meningitidis MC58]; COG1966 Carbon starvation protein CstA, predicted
YP_208147.1	Best Blastp Hit: gb|AAF41850.1| (AE002498) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7380340|emb|CAB84927.1| (AL162756) conserved hypothetical protein [Neisseria meningitidis]
YP_208148.1	MafI1
YP_208149.1	Best Blastp Hit: gb|AAD31038.1|AF142582_2 (AF142582) adhesin MafA [Neisseria gonorrhoeae]; MafA1
YP_208150.1	Best Blastp Hit: gb|AAD31039.1|AF142582_3 (AF142582) adhesin MafB [Neisseria gonorrhoeae]; protein MafB2
YP_208151.1	Best Blastp Hit: pir||E81004 hypothetical protein NMB2113 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227373|gb|AAF42426.1| (AE002560) hypothetical protein [Neisseria meningitidis MC58] >gi|7379072|emb|CAB83621.1| (AL162752) hypothetical protein NMA0316 [Neisseria meningitidis]
YP_208152.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON)
YP_208154.1	Best Blastp Hit: pir||F81004 hypothetical protein NMB2115 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227374|gb|AAF42427.1| (AE002560) hypothetical protein [Neisseria meningitidis MC58]
YP_208155.1	MafI2
YP_208157.1	Best Blastp Hit: pir||E81878 probable acyl-CoA hydrolase NMA1121 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379815|emb|CAB84383.1| (AL162755)  acyl-CoA hydrolase [Neisseria meningitidis]; COG1607 Acyl-CoA hydrolase
YP_208158.1	Best Blastp Hit: pir||D81878 probable oxidoreductase NMA1120 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379814|emb|CAB84382.1| (AL162755)  oxidoreductase [Neisseria meningitidis]; COG0300 Short-chain dehydrogenases of various
YP_208159.1	Best Blastp Hit: emb|CAB84381.1| (AL162755)  C-type cytochrome [Neisseria meningitidis]
YP_208160.1	Best Blastp Hit: gb|AAC44539.1| (U60664) alpha-2,3-sialyltransferase [Neisseria gonorrhoeae]
YP_208161.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON)
YP_208163.1	Best Blastp Hit: emb|CAB84549.1| (AL162755) hypothetical protein NMA1297 [Neisseria meningitidis]
YP_208164.1	Best Blastp Hit: sp|P44189|YE18_HAEIN hypothetical protein HI1418 >gi|1074769|pir||A64029 hypothetical protein HI1418 - Haemophilus influenzae (strain Rd KW20) >gi|1574254|gb|AAC23068.1| (U32821) H. influenzae predicted coding region HI1418 [Haemophilus influenzae Rd]
YP_208165.1	Best Blastp Hit: gb|AAF41392.1| (AE002449) hypothetical protein [Neisseria meningitidis MC58]
YP_208166.1	Best Blastp Hit: pir||T32944 hypothetical protein W01B11.5 - Caenorhabditis elegans >gi|2804494|gb|AAB97600.1| (AF043704) similar to S. cerevisiae SLA2 (GB:Z22811) [Caenorhabditis elegans]
YP_208169.1	Best Blastp Hit: gi|9632520 hypothetical protein [Bacteriophage 933W] >gi|9633449|ref|NP_050552.1| hypothetical protein [Bacteriophage VT2-Sa] >gi|4585431|gb|AAD25459.1|AF125520_54 (AF125520) hypothetical protein [Bacteriophage 933W] >gi|5881645|dbj|BAA84336.1| (AP000363) hypothetical protein [Bacteriophage VT2-Sa] >gi|7649882|dbj|BAA94160.1| (AP000422) hypothetical protein [Escherichia coli O157:H7]
YP_208170.1	Best Blastp Hit: gb|AAF79659.1|AC025416_33 (AC025416) F5O11.3 [Arabidopsis thaliana]
YP_208171.1	Best Blastp Hit: pir||A81819 hypothetical protein NMA1913 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380547|emb|CAB85134.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208173.1	Best Blastp Hit: emb|CAA42694.1| (X60098) M protein [Streptococcus sp.]
YP_208174.1	Best Blastp Hit: pir||H81143 hypothetical protein NMB0899 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226136|gb|AAF41307.1| (AE002442) hypothetical protein [Neisseria meningitidis MC58]
YP_208176.1	Best Blastp Hit: gi|9632518  portal protein [Bacteriophage 933W] >gi|9633447|ref|NP_050550.1| hypothetical protein [Bacteriophage VT2-Sa] >gi|4585429|gb|AAD25457.1|AF125520_52 (AF125520)  portal protein [Bacteriophage 933W] >gi|5881643|dbj|BAA84334.1| (AP000363) hypothetical protein [Bacteriophage VT2-Sa] >gi|7649880|dbj|BAA94158.1| (AP000422) portal protein [Escherichia coli O157:H7]
YP_208177.1	Best Blastp Hit: sp|P44184|YE10_HAEIN hypothetical protein HI1410 >gi|1074763|pir||E64028 hypothetical protein HI1410 - Haemophilus influenzae (strain Rd KW20) >gi|1574247|gb|AAC23058.1| (U32820) H. influenzae predicted coding region HI1410 [Haemophilus influenzae Rd]; COG1783 Phage terminase large subunit
YP_208180.1	Best Blastp Hit: gb|AAF53095.1| (AE003632) CG14926 gene product [Drosophila melanogaster]
YP_208181.1	Best Blastp Hit: gb|AAF24756.1| (AF148565) endonuclease [Streptococcus thermophilus bacteriophage ST3]
YP_208182.1	Best Blastp Hit: dbj|BAA94132.1| (AP000422) hypothetical protein [Escherichia coli O157:H7]
YP_208183.1	Best Blastp Hit: sp|Q47271|YBCO_ECOLI hypothetical 10.3 KD protein IN EMRE-RUS INTERGENIC REGION >gi|2120252|pir||S66582 hypothetical protein 96 - phage 82 >gi|7467043|pir||C64787 ybcO protein - Escherichia coli cryptic lambdoid prophage DLP12 >gi|1051115|emb|CAA63329.1| (X92588) orf96 [Bacteriophage 82] >gi|1051140|emb|CAA63320.1| (X92587) orf96 [Escherichia coli] >gi|1778462|gb|AAB40745.1| (U82598) hypothetical protein [Escherichia coli] >gi|1786761|gb|AAC73650.1| (AE000160) orf, hypothetical protein [Escherichia coli]
YP_208186.1	Best Blastp Hit: gb|AAF41506.1| (AE002461) hypothetical protein [Neisseria meningitidis MC58]
YP_208189.1	Best Blastp Hit: sp|P37469|DNAC_BACSU replicative DNA helicase >gi|2127189|pir||S65970 replicative DNA helicase dnaC - Bacillus subtilis >gi|467330|dbj|BAA05176.1| (D26185) replicative DNA helicase [Bacillus subtilis] >gi|2636591|emb|CAB16081.1| (Z99124) replicative DNA helicase [Bacillus subtilis]; COG0305 Replicative DNA helicase
YP_208190.1	Best Blastp Hit: gi|9634200 Gp54 [Bacteriophage HK97] >gi|6901629|gb|AAF31132.1| (AF069529) Gp54 [Bacteriophage HK97]
YP_208195.1	Best Blastp Hit: gb|AAF41318.1| (AE002442) transcriptional regulator [Neisseria meningitidis MC58]
YP_208196.1	Best Blastp Hit: gb|AAF30438.1|AE002103_3 (AE002103) hypothetical [Ureaplasma urealyticum]
YP_208203.1	Best Blastp Hit: gb|AAF41312.1| (AE002442) hypothetical protein [Neisseria meningitidis MC58]
YP_208205.1	Best Blastp Hit: gb|AAC98788.1| (AF102780) replicase [Banana bunchy top virus]
YP_208206.1	Best Blastp Hit: emb|CAA61912.1| (X89769) fructose-1,6-bisphosphate aldolase [Euglena gracilis]
YP_208207.1	Best Blastp Hit: pir||T13296 hypothetical protein 8 - Streptococcus phage phi-O1205 >gi|2444088|gb|AAC79524.1| (U88974) ORF8 [Streptococcus thermophilus temperate bacteriophage O1205]
YP_208208.1	Best Blastp Hit: pir||A71978 methyl-accepting chemotaxis protein (MCP) - Helicobacter pylori (strain J99) >gi|4154575|gb|AAD05650.1| (AE001446) methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
YP_208209.1	Best Blastp Hit: gi|10955548 translocator YopD [Yersinia enterocolitica] >gi|586795|sp|P37132|YOPD_YEREN YOPD protein >gi|4324335|gb|AAD16812.1| (AF102990) translocator YopD [Yersinia enterocolitica]
YP_208212.1	Best Blastp Hit: pir||F81104 hypothetical protein NMB1253 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226493|gb|AAF41633.1| (AE002473) hypothetical protein [Neisseria meningitidis MC58]
YP_208213.1	catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate
YP_208215.1	Best Blastp Hit: emb|CAB87331.1| (AL163672) glycosyl transferase [Streptomyces coelicolor A3(2)]; COG0463 Glycosyltransferases involved in cell wall
YP_208216.1	Best Blastp Hit: gb|AAC82509.1| (U65994) pilin gene inverting protein homolog PivNG [Neisseria gonorrhoeae]
YP_208217.1	Best Blastp Hit: gb|AAF42092.1| (AE002524) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_208218.1	Best Blastp Hit: gb|AAF42091.1| (AE002524) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_208219.1	Best Blastp Hit: gb|AAF42090.1| (AE002524) tspB protein,  [Neisseria meningitidis MC58]; TspB1
YP_208220.1	Best Blastp Hit: pir||G81192 hypothetical protein NMB0481 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225710|gb|AAF40918.1| (AE002405) hypothetical protein [Neisseria meningitidis MC58] >gi|7380633|emb|CAB85223.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208221.1	Best Blastp Hit: pir||H81192 hypothetical protein NMB0482, NMB0974, NMB1745, NMA2003, NMA1171 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225711|gb|AAF40919.1| (AE002405) hypothetical protein [Neisseria meningitidis MC58] >gi|7226213|gb|AAF41378.1| (AE002448) hypothetical protein [Neisseria meningitidis MC58] >gi|7226999|gb|AAF42088.1| (AE002524) hypothetical protein [Neisseria meningitidis MC58] >gi|7379863|emb|CAB84433.1| (AL162755) hypothetical protein NMA1171 [Neisseria meningitidis] >gi|7380632|emb|CAB85222.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208222.1	Best Blastp Hit: emb|CAB84432.1| (AL162755) integral membrane protein [Neisseria meningitidis] >gi|7380631|emb|CAB85221.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208223.1	Best Blastp Hit: emb|CAB84063.1| (AL162754) hypothetical protein NMA0780 [Neisseria meningitidis]
YP_208224.1	Best Blastp Hit: pir||F81922 hypothetical protein NMA0781 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379502|emb|CAB84064.1| (AL162754) hypothetical protein NMA0781 [Neisseria meningitidis]
YP_208225.1	Best Blastp Hit: pir||G81922 probable phage replication protein NMA0782 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379503|emb|CAB84065.1| (AL162754)  phage replication protein [Neisseria meningitidis]
YP_208226.1	Best Blastp Hit: emb|CAB84066.1| (AL162754) hypothetical protein NMA0783 [Neisseria meningitidis]
YP_208227.1	Best Blastp Hit: emb|CAB85032.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208228.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); COG0626 Cystathionine
YP_208229.1	Best Blastp Hit: pir||F81806 hypothetical protein NMA1809 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380448|emb|CAB85034.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208230.1	Best Blastp Hit: gb|AAF41963.1| (AE002511) hypothetical protein [Neisseria meningitidis MC58]
YP_208231.1	Best Blastp Hit: sp|Q06758|HISJ_NEIGO histidine-binding protein precursor (HBP) >gi|95363|pir||S19184 hypothetical protein - Neisseria gonorrhoeae >gi|49068|emb|CAA45768.1| (X64421) gene homologous to hisJ (E.coli) and argT (S.typhimurium) [Neisseria gonorrhoeae]; COG0834 Periplasmic amino acid binding proteins
YP_208232.1	involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain
YP_208233.1	Best Blastp Hit: pir||G64866 probable membrane protein b1202 - Escherichia coli >gi|1787452|gb|AAC74286.1| (AE000218)  adhesion and penetration protein [Escherichia coli]
YP_208234.1	Best Blastp Hit: pir||G64866 probable membrane protein b1202 - Escherichia coli >gi|1787452|gb|AAC74286.1| (AE000218)  adhesion and penetration protein [Escherichia coli]
YP_208235.1	Best Blastp Hit: pir||G81087 IS1016C2 transposase NMB1411 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226649|gb|AAF41773.1| (AE002489) IS1016C2 transposase [Neisseria meningitidis MC58]
YP_208238.1	catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine
YP_208239.1	with TehA confers resistance to tellurite
YP_208240.1	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids
YP_208242.1	Best Blastp Hit: Frame shift fixed; invertase related gene 3, phage associated protein
YP_208243.1	Best Blastp Hit: gb|AAF42092.1| (AE002524) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_208244.1	Best Blastp Hit: gb|AAF42091.1| (AE002524) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_208245.1	Best Blastp Hit: gb|AAF42090.1| (AE002524) tspB protein,  [Neisseria meningitidis MC58]; protein TspB2
YP_208246.1	Best Blastp Hit: emb|CAB84432.1| (AL162755) integral membrane protein [Neisseria meningitidis] >gi|7380631|emb|CAB85221.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208247.1	Best Blastp Hit: gb|AAF40920.1| (AE002405) hypothetical protein [Neisseria meningitidis MC58] >gi|7226211|gb|AAF41376.1| (AE002448) hypothetical protein [Neisseria meningitidis MC58] >gi|7226997|gb|AAF42086.1| (AE002524) hypothetical protein [Neisseria meningitidis MC58] >gi|7379861|emb|CAB84431.1| (AL162755) hypothetical protein NMA1169 [Neisseria meningitidis] >gi|7380630|emb|CAB85220.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208248.1	Best Blastp Hit: pir||C81829 hypothetical protein NMA2000 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7379860|emb|CAB84430.1| (AL162755) hypothetical protein NMA1168 [Neisseria meningitidis] >gi|7380629|emb|CAB85219.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208249.1	Best Blastp Hit: pir||H81959 patch repair protein (EC 3.1.-.-) NMA0429 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379179|emb|CAB83728.1| (AL162753) patch repair protein [Neisseria meningitidis]
YP_208251.1	Best Blastp Hit: gb|AAF62338.1| (AE002551) type IV pilin-related protein [Neisseria meningitidis MC58]
YP_208252.1	COG1555 DNA uptake protein ComEA and related; DNA-binding competence protein 1
YP_208253.1	Best Blastp Hit: emb|CAB85400.1| (AL162758) hypothetical protein [Neisseria meningitidis]
YP_208254.1	Best Blastp Hit: pir||B81019 nitrogen regulatory protein P-II NMB1995 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227257|gb|AAF42322.1| (AE002548) nitrogen regulatory protein P-II [Neisseria meningitidis MC58]; COG0347 Nitrogen regulatory protein PII
YP_208255.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_208256.1	Best Blastp Hit: pir||G75287 NADH oxidase-related protein - Deinococcus radiodurans  (strain R1) >gi|6460144|gb|AAF11879.1|AE002064_10 (AE002064) NADH oxidase-related protein [Deinococcus radiodurans]; COG1902 NADH:flavin oxidoreductases, Old Yellow
YP_208257.1	Best Blastp Hit: pir||D70029 transcription regulator ArsR family homolog yvbA - Bacillus subtilis >gi|2635892|emb|CAB15384.1| (Z99121) similar to transcriptional regulator (ArsR family) [Bacillus subtilis]; COG0640 Predicted transcriptional regulators
YP_208259.1	Best Blastp Hit: emb|CAB83742.1| (AL162753) hydroxyacylglutathione hydrolase [Neisseria meningitidis]; COG0491 Zn-dependent hydrolases, including
YP_208260.1	protein MgtE
YP_208261.1	becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers
YP_208262.1	Best Blastp Hit: gb|AAF44765.1|AF235148_1 (AF235148) GNA2001 [Neisseria gonorrhoeae] >gi|7274424|gb|AAF44767.1|AF235150_1 (AF235150) GNA2001 [Neisseria gonorrhoeae]; COG0791 Cell wall-associated hydrolases
YP_208263.1	Best Blastp Hit: gb|AAF42329.1| (AE002550) hypothetical protein [Neisseria meningitidis MC58] >gi|7379189|emb|CAB83738.1| (AL162753) hypothetical protein [Neisseria meningitidis]
YP_208264.1	Best Blastp Hit: pir||H81960 hypothetical inner membrane protein NMA0437 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379187|emb|CAB83736.1| (AL162753) hypothetical inner membrane protein [Neisseria meningitidis]; COG1380 Predicted membrane protein, YohJ family
YP_208265.1	Best Blastp Hit: pir||B81017 conserved hypothetical protein NMB2004 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227268|gb|AAF42331.1| (AE002550) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1346 Predicted membrane protein, YohK family
YP_208266.1	bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate
YP_208267.1	Best Blastp Hit: >pir||D81017 chloride channel protein-related protein NMB2006 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) gb|AAF42333.1| (AE002550) chloride channel protein-related protein [Neisseria meningitidis MC58] emb|CAB83733.1| (AL162753) hypothetical inner membrane protein [Neisseria meningitidis Z2491]
YP_208268.1	Best Blastp Hit: 0e+00 2213 95%/97% 501/463aa gi|7379183|emb|CAB83732.1| (AL162753) ATP-dependent DNA helicase [Neisseria meningitidis]; COG1643 HrpA-like helicases
YP_208269.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON)
YP_208270.1	Best Blastp Hit: gb|AAF42335.1| (AE002550) YhbX/YhjW/YijP/YjdB family protein [Neisseria meningitidis MC58]; COG2194 Predicted membrane-associated
YP_208271.1	Best Blastp Hit: emb|CAB83729.1| (AL162753)  DNA helicase [Neisseria meningitidis]; COG1643 HrpA-like helicases; HrpA protein
YP_208272.1	Best Blastp Hit: gb|AAC82509.1| (U65994) pilin gene inverting protein homolog PivNG [Neisseria gonorrhoeae]; invertase related gene 4
YP_208273.1	Best Blastp Hit: emb|CAB84427.1| (AL162755) hypothetical protein NMA1165 [Neisseria meningitidis]
YP_208274.1	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_208275.1	TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity
YP_208276.1	Best Blastp Hit: emb|CAB84423.1| (AL162755) outer-membrane receptor protein [Neisseria meningitidis]; COG1629 Outer membrane receptor proteins, mostly Fe
YP_208277.1	catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine
YP_208278.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
YP_208279.1	Best Blastp Hit: gb|AAG17897.1|AF297971_1 (AF297971) restriction endonuclease R.NgoMIII [Neisseria gonorrhoeae]
YP_208280.1	Best Blastp Hit: possibly phase variable - two 8A residue homopolymer repeats in the the coding sequence (ON); COG0270 Site-specific DNA methylase dcm
YP_208281.1	Best Blastp Hit: emb|CAB84417.1| (AL162755) hypothetical protein NMA1155 [Neisseria meningitidis]; COG1943 Predicted transposase
YP_208282.1	Best Blastp Hit: pir||G81087 IS1016C2 transposase NMB1411 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226649|gb|AAF41773.1| (AE002489) IS1016C2 transposase [Neisseria meningitidis MC58]
YP_208283.1	CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_208284.1	Best Blastp Hit: pir||H81068 long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) NMB1555 [similarity] - Neisseria meningitidis (group B strain MD58) >gi|7226802|gb|AAF41909.1| (AE002506) long-chain-fatty-acid--CoA ligase [Neisseria meningitidis MC58]; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid
YP_208285.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_208286.1	Best Blastp Hit: pir||A81799 hypothetical protein NMA1745 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380387|emb|CAB84973.1| (AL162757) hypothetical protein NMA1745 [Neisseria meningitidis]
YP_208287.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); COG0818 Diacylglycerol kinase
YP_208288.1	catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione
YP_208289.1	catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_208290.1	Best Blastp Hit: gb|AAF41915.1| (AE002506) transcriptional regulator, DeoR family [Neisseria meningitidis MC58]; COG1349 Transcriptional regulators of sugar
YP_208291.1	Best Blastp Hit: pir||G81069 conserved hypothetical protein NMB1562 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226809|gb|AAF41916.1| (AE002506) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_208292.1	Best Blastp Hit: gb|AAF41917.1| (AE002506) transcriptional regulator, GntR family [Neisseria meningitidis MC58] >gi|7380393|emb|CAB84979.1| (AL162757) gntR-family transcriptional regulator [Neisseria meningitidis]; COG1802 Transcriptional regulators, GntR family
YP_208293.1	Best Blastp Hit: pir||A81800 hypothetical protein NMA1753 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380395|emb|CAB84981.1| (AL162757) hypothetical protein [Neisseria meningitidis]; COG1765 Uncharacterized ACR
YP_208294.1	Best Blastp Hit: pir||A81068 hypothetical protein NMB1565 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226813|gb|AAF41919.1| (AE002507) hypothetical protein [Neisseria meningitidis MC58] >gi|7380396|emb|CAB84982.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208295.1	Best Blastp Hit: pir||C81800 phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) NMA1755 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380397|emb|CAB84983.1| (AL162757) phosphoribosylglycinamide transformylase [Neisseria meningitidis]; COG0299 Folate-dependent
YP_208296.1	Best Blastp Hit: gb|AAF41921.1| (AE002507) macrophage infectivity potentiator [Neisseria meningitidis MC58]; COG0545 FKBP-type peptidyl-prolyl cis-trans
YP_208297.1	Best Blastp Hit: pir||E81800 DNA-directed DNA polymerase (EC 2.7.7.7) III chi chain NMA1757 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380399|emb|CAB84985.1| (AL162757) DNA polymerase III chi subunit [Neisseria meningitidis]; HolC
YP_208298.1	Best Blastp Hit: pir||F81800 leucyl aminopeptidase (EC 3.4.11.1) NMA1758 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380400|emb|CAB84986.1| (AL162757) aminopeptidase A [Neisseria meningitidis]; COG0260 Leucyl aminopeptidase
YP_208299.1	Best Blastp Hit: emb|CAB84987.1| (AL162757) conserved integral membrane hypothetical protein [Neisseria meningitidis]; COG0795 Predicted permeases
YP_208300.1	Best Blastp Hit: emb|CAB84988.1| (AL162757) conserved hypothetical integral membrane protein [Neisseria meningitidis]; COG0795 Predicted permeases
YP_208301.1	Best Blastp Hit: gb|AAF42247.1| (AE002540) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_208302.1	catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate
YP_208303.1	catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway
YP_208304.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_208305.1	Best Blastp Hit: emb|CAB84992.1| (AL162757) conserved hypothetical protein [Neisseria meningitidis]; COG1359 Uncharacterized ACR, YneC family
YP_208306.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit
YP_208307.1	Best Blastp Hit: pir||F81801 acetolactate synthase (EC 4.1.3.18) III large chain NMA1766 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380408|emb|CAB84994.1| (AL162757) acetolactate synthase isozyme III large subunit [Neisseria meningitidis]; COG0028 Thiamine pyrophosphate-requiring enzymes
YP_208308.1	Best Blastp Hit: gb|AAF41931.1| (AE002508) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1999 Uncharacterized protein SCO1/SenC/PrrC
YP_208309.1	short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ
YP_208310.1	Best Blastp Hit: pir||D81067 hypothetical protein NMB1580, NMA1769 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226828|gb|AAF41933.1| (AE002508) hypothetical protein [Neisseria meningitidis MC58] >gi|7380411|emb|CAB84997.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208311.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_208312.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_208313.1	catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis
YP_208314.1	Best Blastp Hit: emb|CAB85001.1| (AL162757) hypothetical protein [Neisseria meningitidis]; COG2084 3-hydroxyisobutyrate dehydrogenase and
YP_208315.1	Best Blastp Hit: gb|AAF41938.1| (AE002509) transcriptional regulator, MarR family [Neisseria meningitidis MC58]; COG1846 Transcriptional regulators, MarR/EmrR
YP_208316.1	Best Blastp Hit: pir||D81065 hypothetical protein NMB1586 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226835|gb|AAF41939.1| (AE002509) hypothetical protein [Neisseria meningitidis MC58]
YP_208317.1	SohB; periplasmic protein; member of the peptidase S49 family
YP_208318.1	Best Blastp Hit: pir||C81803 CDPdiacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) NMA1779 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380421|emb|CAB85007.1| (AL162757) CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Neisseria meningitidis]; COG0558 Phosphatidylglycerophosphate synthase
YP_208319.1	Best Blastp Hit: pir||E81803 hypothetical protein NMA1781 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380423|emb|CAB85009.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208320.1	Best Blastp Hit: pir||H81065 conserved hypothetical protein NMB1590 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226839|gb|AAF41943.1| (AE002509) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0599 Uncharacterized ACR, homolog
YP_208321.1	Best Blastp Hit: gb|AAD44696.1|AF128630_1 (AF128630) MtrA [Neisseria gonorrhoeae] >gi|7228474|gb|AAF42471.1|AF133676_1 (AF133676) MtrA [Neisseria gonorrhoeae]; COG2207 AraC-type DNA-binding domain-containing
YP_208322.1	Best Blastp Hit: pir||H81803 hypothetical protein NMA1784 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380426|emb|CAB85012.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208323.1	Best Blastp Hit: emb|CAB85013.1| (AL162757) conserved hypothetical integral membrane protein [Neisseria meningitidis]; COG0697 Predicted permeases
YP_208324.1	Best Blastp Hit: pir||D81066 spermidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein NMB1594 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226843|gb|AAF41947.1| (AE002509) spermidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein [Neisseria meningitidis MC58]; COG0687 Spermidine/putrescine-binding periplasmic
YP_208325.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_208326.1	Best Blastp Hit: pir||D81804 hypothetical protein NMA1789 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380430|emb|CAB85016.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208327.1	Best Blastp Hit: pir||G81087 IS1016C2 transposase NMB1411 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226649|gb|AAF41773.1| (AE002489) IS1016C2 transposase [Neisseria meningitidis MC58]
YP_208329.1	2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate
YP_208330.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_208331.1	Best Blastp Hit: gb|AAC82507.1| (U65994) Rsp [Neisseria gonorrhoeae]; COG2204 AAA superfamily ATPases with N-terminal; transcriptional regulator
YP_208332.1	Best Blastp Hit: sp|P72077|YHIQ_NEIGO hypothetical 27.3 KD protein >gi|3851182|gb|AAC82508.1| (U65994) unknown [Neisseria gonorrhoeae]; COG0500 SAM-dependent methyltransferases
YP_208333.1	Best Blastp Hit: gb|AAC82509.1| (U65994) pilin gene inverting protein homolog PivNG [Neisseria gonorrhoeae]; invertase related gene 5, phage associated protein
YP_208334.1	Best Blastp Hit: gb|AAF42092.1| (AE002524) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_208335.1	Best Blastp Hit: gb|AAF42091.1| (AE002524) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_208336.1	Best Blastp Hit: gb|AAF42090.1| (AE002524) tspB protein,  [Neisseria meningitidis MC58]; protein TspB3
YP_208337.1	Best Blastp Hit: pir||G81192 hypothetical protein NMB0481 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225710|gb|AAF40918.1| (AE002405) hypothetical protein [Neisseria meningitidis MC58] >gi|7380633|emb|CAB85223.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208338.1	Best Blastp Hit: pir||H81192 hypothetical protein NMB0482, NMB0974, NMB1745, NMA2003, NMA1171 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225711|gb|AAF40919.1| (AE002405) hypothetical protein [Neisseria meningitidis MC58] >gi|7226213|gb|AAF41378.1| (AE002448) hypothetical protein [Neisseria meningitidis MC58] >gi|7226999|gb|AAF42088.1| (AE002524) hypothetical protein [Neisseria meningitidis MC58] >gi|7379863|emb|CAB84433.1| (AL162755) hypothetical protein NMA1171 [Neisseria meningitidis] >gi|7380632|emb|CAB85222.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208339.1	Best Blastp Hit: emb|CAB84432.1| (AL162755) integral membrane protein [Neisseria meningitidis] >gi|7380631|emb|CAB85221.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208340.1	Best Blastp Hit: gb|AAF40920.1| (AE002405) hypothetical protein [Neisseria meningitidis MC58] >gi|7226211|gb|AAF41376.1| (AE002448) hypothetical protein [Neisseria meningitidis MC58] >gi|7226997|gb|AAF42086.1| (AE002524) hypothetical protein [Neisseria meningitidis MC58] >gi|7379861|emb|CAB84431.1| (AL162755) hypothetical protein NMA1169 [Neisseria meningitidis] >gi|7380630|emb|CAB85220.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208341.1	Best Blastp Hit: pir||C81829 hypothetical protein NMA2000 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7379860|emb|CAB84430.1| (AL162755) hypothetical protein NMA1168 [Neisseria meningitidis] >gi|7380629|emb|CAB85219.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208342.1	Best Blastp Hit: emb|CAB85043.1| (AL162757) hypothetical protein [Neisseria meningitidis]; COG0537 Diadenosine tetraphosphate (Ap4A)
YP_208343.1	Best Blastp Hit: pir||H81807 conserved hypothetical protein NMA1819 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|6900400|emb|CAB72012.1| (AJ391256) hypothetical protein [Neisseria meningitidis] >gi|7380458|emb|CAB85044.1| (AL162757) conserved hypothetical protein [Neisseria meningitidis]; COG1619 Uncharacterized proteins, homologs of
YP_208344.1	Best Blastp Hit: emb|CAB85109.1| (AL162757) nitric oxide reductase [Neisseria meningitidis]; protein NorB
YP_208345.1	Best Blastp Hit: sp|Q02219|ANIA_NEIGO major outer membrane protein PAN 1 precursor >gi|477564|pir||A49208 outer membrane protein Pan 1 - Neisseria gonorrhoeae >gi|150277|gb|AAA25462.1| (M97926) major anaerobically induced outer membrane protein [Neisseria gonorrhoeae] >gi|258387|gb|AAB23836.1| Pan 1=outer membrane protein [Neisseria gonorrhoeae, Peptide, 392 aa]; protein AniA
YP_208346.1	Best Blastp Hit: gb|AAF62335.1| (AE002513) hypothetical protein [Neisseria meningitidis MC58]; COG1262 Uncharacterized BCR
YP_208347.1	Best Blastp Hit: pir||E81059 conserved hypothetical protein NMB1637 NMA1891 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|2253229|gb|AAC32673.1| (AF004820) hypthetical protein [Neisseria meningitidis] >gi|2253234|gb|AAC32677.1| (AF004821) hypothetical protein [Neisseria meningitidis] >gi|2253244|gb|AAC32685.1| (AF004823) hypothetical protein [Neisseria meningitidis] >gi|2253249|gb|AAC32689.1| (AF004824) hypothetical protein [Neisseria meningitidis] >gi|2253254|gb|AAC32693.1| (AF004825) hypothetical protein [Neisseria meningitidis] >gi|2253259|gb|AAC32697.1| (AF004826) hypothetical protein [Neisseria meningitidis] >gi|7226887|gb|AAF41986.1| (AE002514) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7380526|emb|CAB85113.1| (AL162757) conserved hypothetical protein [Neisseria meningitidis]; COG0778 Nitroreductases
YP_208348.1	Best Blastp Hit: pir||G81059 hypothetical protein NMB1639 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226889|gb|AAF41988.1| (AE002514) hypothetical protein [Neisseria meningitidis MC58]
YP_208349.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine
YP_208350.1	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins
YP_208351.2	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_208352.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_208353.1	Best Blastp Hit: pir||C81058 hypothetical protein NMB1644 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226895|gb|AAF41993.1| (AE002515) hypothetical protein [Neisseria meningitidis MC58]
YP_208354.1	Best Blastp Hit: pir||D81058 hypothetical protein NMB1645 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226896|gb|AAF41994.1| (AE002515) hypothetical protein [Neisseria meningitidis MC58]
YP_208355.1	Best Blastp Hit: pir||D81817 probable hemeolysin NMA1900 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380534|emb|CAB85121.1| (AL162757) haemolysin [Neisseria meningitidis]; COG1272 Predicted membrane proteins, hemolysin
YP_208356.1	Best Blastp Hit: pir||F81058 amino acid symporter, probable NMB1647 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226898|gb|AAF41996.1| (AE002515) amino acid symporter,  [Neisseria meningitidis MC58]; COG1115 Sodium-alanine symporters
YP_208357.1	Best Blastp Hit: pir||F81817 conserved hypothetical protein NMA1902 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380536|emb|CAB85123.1| (AL162757) conserved hypothetical protein [Neisseria meningitidis]; COG0217 Uncharacterized ACR, YebC family
YP_208358.1	Best Blastp Hit: gb|AAF41998.1| (AE002515) disulfide bond formation protein B [Neisseria meningitidis MC58]; COG1495 Disulfide bond formation protein DsbB
YP_208360.1	Best Blastp Hit: pir||A81059 leucine-responsive regulatory protein NMB1650 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226901|gb|AAF41999.1| (AE002515) leucine-responsive regulatory protein [Neisseria meningitidis MC58]; COG1522 Transcriptional regulators, Lrp family
YP_208361.1	Best Blastp Hit: pir||B81818 alanine racemase (EC 5.1.1.1) NMA1906 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380540|emb|CAB85127.1| (AL162757) alanine racemase [Neisseria meningitidis]; COG0787 Alanine racemase
YP_208363.1	Best Blastp Hit: pir||E81818 conserved hypothetical protein NMA1908 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380543|emb|CAB85130.1| (AL162757) conserved hypothetical protein [Neisseria meningitidis]
YP_208364.1	ACT domain-containing protein
YP_208365.1	Best Blastp Hit: pir||E81057 conserved hypothetical protein NMB1654 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226906|gb|AAF42003.1| (AE002516) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_208366.1	involved in methylation of ribosomal protein L3
YP_208367.1	Best Blastp Hit: pir||A81819 hypothetical protein NMA1913 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380547|emb|CAB85134.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208368.1	Best Blastp Hit: pir||G81087 IS1016C2 transposase NMB1411 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226649|gb|AAF41773.1| (AE002489) IS1016C2 transposase [Neisseria meningitidis MC58]
YP_208369.1	COG1555 DNA uptake protein ComEA and related; DNA-binding competence protein 2
YP_208370.1	Best Blastp Hit: possibly phase variable - 8G residue homopolymer repeat in the coding sequence (ON)
YP_208371.1	Best Blastp Hit: pir||D81819 hypothetical protein NMA1916 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380550|emb|CAB85137.1| (AL162757) hypothetical protein [Neisseria meningitidis]; COG0452 Flavoprotein involved in panthothenate
YP_208372.1	Best Blastp Hit: pir||B81058 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase NMB1659 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226911|gb|AAF42008.1| (AE002516) guanosine-3`,5`-bis(diphosphate) 3`-pyrophosphohydrolase [Neisseria meningitidis MC58]; COG0317 Guanosine polyphosphate
YP_208373.1	Best Blastp Hit: gb|AAF42009.1| (AE002517) DNA-directed RNA polymerase, omega subunit [Neisseria meningitidis MC58] >gi|7380552|emb|CAB85139.1| (AL162757) DNA-directed RNA polymerase omega chain [Neisseria meningitidis]; COG1758 RNA polymerase-associated protein RpoZ
YP_208374.1	Essential for recycling GMP and indirectly, cGMP
YP_208375.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_208376.1	Best Blastp Hit: emb|CAB85142.1| (AL162757) conserved hypothetical protein [Neisseria meningitidis]; COG0561 Predicted hydrolases of the HAD superfamily
YP_208377.1	Best Blastp Hit: emb|CAB85143.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208378.1	Best Blastp Hit: pir||B81056 proteinase, probable NMB1664 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226917|gb|AAF42013.1| (AE002517) protease,  [Neisseria meningitidis MC58]; COG0826 Protease related to collagenase
YP_208379.1	Best Blastp Hit: pir||D81820 hypothetical protein NMA1924 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380558|emb|CAB85145.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208380.1	Best Blastp Hit: pir||G81087 IS1016C2 transposase NMB1411 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226649|gb|AAF41773.1| (AE002489) IS1016C2 transposase [Neisseria meningitidis MC58]
YP_208381.1	Best Blastp Hit: pir||E81820 heme utilisation protein NMA1927 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|6692578|gb|AAF24745.1|AF133695_1 (AF133695) HemO [Neisseria meningitidis] >gi|7380559|emb|CAB85147.1| (AL162757) haem utilisation protein [Neisseria meningitidis]
YP_208382.1	Best Blastp Hit: pir||F81820 hypothetical integral membrane protein NMA1928 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380560|emb|CAB85148.1| (AL162757) hypothetical integral membrane protein [Neisseria meningitidis]; protein PqiA
YP_208383.1	Best Blastp Hit: pir||A81057 hypothetical integral membrane protein pqiB NMA1929 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226924|gb|AAF42020.1| (AE002517) pqiB protein [Neisseria meningitidis MC58] >gi|7380561|emb|CAB85149.1| (AL162757) hypothetical integral membrane protein [Neisseria meningitidis]; protein PqiB
YP_208384.1	Best Blastp Hit: pir||H81820 probable lipoprotein NMA1930 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380562|emb|CAB85150.1| (AL162757) lipoprotein [Neisseria meningitidis]
YP_208385.1	Best Blastp Hit: pir||A81821 DNA-3-methyladenine glycosidase I (EC 3.2.2.20) NMA1931 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380563|emb|CAB85151.1| (AL162757) DNA-3-methyladenine glycosylase I [Neisseria meningitidis]
YP_208386.1	Best Blastp Hit: gb|AAF42023.1| (AE002517) GDSL lipase [Neisseria meningitidis MC58] >gi|7380564|emb|CAB85152.1| (AL162757)  lipase [Neisseria meningitidis]
YP_208387.1	Best Blastp Hit: pir||C81821 probable integral membrane protein NMA1933 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380565|emb|CAB85153.1| (AL162757)  integral membrane protein [Neisseria meningitidis]
YP_208388.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine
YP_208389.1	Best Blastp Hit: emb|CAB85155.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208390.1	Best Blastp Hit: gb|AAF42025.1| (AE002518) cytochrome c5 [Neisseria meningitidis MC58]
YP_208391.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_208392.1	catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs
YP_208393.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_208394.1	Best Blastp Hit: pir||C81055 hypothetical protein NMB1681 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226934|gb|AAF42029.1| (AE002518) hypothetical protein [Neisseria meningitidis MC58]
YP_208395.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_208396.1	hydrolyzes diadenosine polyphosphate
YP_208397.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_208398.1	Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynthes
YP_208399.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_208400.1	Best Blastp Hit: gb|AAF42035.1| (AE002519) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0084 Predicted hydrolases of PHP superfamily
YP_208401.1	Best Blastp Hit: emb|CAB85167.1| (AL162757) L-asparaginase [Neisseria meningitidis]; COG0252 L-asparaginase; protein AnsA
YP_208402.1	Best Blastp Hit: pir||B81823 DedA-family integral membrane protein NMA1948 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380580|emb|CAB85168.1| (AL162757) DedA-family integral membrane protein [Neisseria meningitidis]; COG0586 Uncharacterized membrane-associated
YP_208403.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_208404.1	Best Blastp Hit: sp|Q51161|DHPS_NEIME dihydropteroate synthase (DHPS) (dihydropteroate pyrophosphorylase) >GI|95427|pir||S25614 dihydropteroate synthase (EC 2.5.1.15) - Neisseria meningitidis (strain 952/68) >gi|2120887|pir||S65839 dihydropteroate synthase (EC 2.5.1.15) - Neisseria meningitidis (strain 952/68) >gi|45036|emb|CAA48206.1| (X68069) dihydropteroate synthase [Neisseria meningitidis]; COG0294 Dihydropteroate synthase
YP_208405.1	Best Blastp Hit: gb|AAF42040.1| (AE002519) chorismate mutase-related protein [Neisseria meningitidis MC58]; COG0722 DAHP synthase/3-Deoxy-D-manno-octulosonic
YP_208406.1	Best Blastp Hit: pir||G81051 hypothetical protein NMB1693 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226948|gb|AAF42041.1| (AE002520) hypothetical protein [Neisseria meningitidis MC58]
YP_208407.1	Best Blastp Hit: pir||H81051 conserved hypothetical protein NMB1694 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226949|gb|AAF42042.1| (AE002520) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0043 Uncharacterized ACR, YigC family
YP_208408.1	Best Blastp Hit: pir||G81823 hypothetical protein NMA1953 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380585|emb|CAB85173.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208409.1	Best Blastp Hit: pir||H81823 probable integral membrane protein NMA1954 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380586|emb|CAB85174.1| (AL162757)  integral membrane protein [Neisseria meningitidis]
YP_208410.1	Best Blastp Hit: pir||B81171 hypothetical protein NMB0676 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225903|gb|AAF41094.1| (AE002422) hypothetical protein [Neisseria meningitidis MC58]
YP_208411.1	Best Blastp Hit: emb|CAB85175.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208412.1	Best Blastp Hit: pir||G81052 hypothetical protein NMB1701 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226956|gb|AAF42049.1| (AE002520) hypothetical protein [Neisseria meningitidis MC58]
YP_208413.1	Best Blastp Hit: pir||A81053 3-oxoacyl-(acyl-carrier-protein) synthase II NMB1703 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226958|gb|AAF42051.1| (AE002520) 3-oxoacyl-(acyl-carrier-protein) synthase II [Neisseria meningitidis MC58]; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I
YP_208414.1	Best Blastp Hit: emb|CAB85178.1| (AL162757) beta-1,4-glucosyltransferase [Neisseria meningitidis]; COG0463 Glycosyltransferases involved in cell
YP_208415.1	Best Blastp Hit: gb|AAF42053.1| (AE002520) alpha-1,2-N-acetylglucosamine transferase [Neisseria meningitidis MC58]; COG0438 Glycosyltransferases I
YP_208416.1	Best Blastp Hit: pir||F81050 sodium- and chloride-dependent transporter NMB1707 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226963|gb|AAF42055.1| (AE002521) sodium- and chloride-dependent transporter [Neisseria meningitidis MC58]; COG0733 Sodium-dependent transporters (SNF family)
YP_208417.1	ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived
YP_208418.1	converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer
YP_208419.1	Best Blastp Hit: gb|AAF41523.1| (AE002462) hypothetical protein [Neisseria meningitidis MC58] >gi|7226410|gb|AAF41558.1| (AE002465) hypothetical protein [Neisseria meningitidis MC58]
YP_208420.1	Best Blastp Hit: emb|CAB85185.1| (AL162757) GntR-family transcriptional regulator [Neisseria meningitidis]; COG2186 Transcriptional regulators, FadR family
YP_208421.1	Best Blastp Hit: gb|AAF42059.1| (AE002521) L-lactate permease-related protein [Neisseria meningitidis MC58]; COG1620 L-lactate permease
YP_208422.1	Best Blastp Hit: emb|CAB85187.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208423.1	Best Blastp Hit: gb|AAF42061.1| (AE002521) multidrug efflux pump channel protein [Neisseria meningitidis MC58]
YP_208424.1	Best Blastp Hit: gb|AAC45560.1| (U60099) RND protein [Neisseria gonorrhoeae]; COG0841 Cation efflux system protein
YP_208425.1	Best Blastp Hit: sp|P43505|MTRC_NEIGO membrane fusion protein MtrC precursor >gi|550460|gb|AAA80193.1| (U14993) membrane fusion protein [Neisseria gonorrhoeae]; COG0845 Membrane permeases, predicted cation efflux
YP_208426.1	Best Blastp Hit: sp|P39897|MTRR_NEIGO regulatory protein MtrR >gi|541020|pir||S40250 MtrR protein - Neisseria gonorrhoeae >gi|7449616|pir||S42419 probable transcription repressor mtrR - Neisseria gonorrhoeae (strain FA19) >gi|438189|emb|CAA81047.1| (Z25797) MtrR protein [Neisseria gonorrhoeae]; COG1309 Transcriptional regulators, AcrR family
YP_208427.1	Best Blastp Hit: emb|CAB85192.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208428.1	Best Blastp Hit: gb|AAD51362.2|AF176820_1 (AF176820)  efflux pump component MtrF [Neisseria gonorrhoeae]
YP_208429.1	Best Blastp Hit: pir||D81826 exodeoxyribonuclease V (EC 3.1.11.5) NMA1974 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380606|emb|CAB85194.1| (AL162757) exodeoxyribonuclease V [Neisseria meningitidis]; COG1330 Exonuclease V gamma subunit, RecC
YP_208430.1	Best Blastp Hit: pir||E81826 probable integral membrane protein NMA1975 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380607|emb|CAB85195.1| (AL162757)  integral membrane protein [Neisseria meningitidis]
YP_208431.1	Best Blastp Hit: gb|AAF42068.1| (AE002522) cytochrome c oxidase, subunit III [Neisseria meningitidis MC58]; COG2010 Cytochrome c, mono- and diheme variants; protein CcoP
YP_208432.1	Best Blastp Hit: emb|CAB85198.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208433.1	CcoO; FixO
YP_208434.1	CcoN; FixN
YP_208435.1	Best Blastp Hit: pir||E81048 conserved hypothetical protein NMB1726 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226981|gb|AAF42071.1| (AE002523) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0265 Trypsin-like serine proteases, typically
YP_208436.1	Best Blastp Hit: pir||C81827 hypothetical protein NMA1982 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380613|emb|CAB85202.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208437.1	Best Blastp Hit: sp|O06434|EXBD_NEIGO biopolymer transport ExbD protein >gi|2098623|gb|AAC45288.1| (U79563) ExbD [Neisseria gonorrhoeae]; COG0848 biopolymer transport protein ExbD
YP_208438.1	Best Blastp Hit: sp|O06433|EXBB_NEIGO biopolymer transport ExbB protein >gi|2098622|gb|AAC45287.1| (U79563) ExbB [Neisseria gonorrhoeae]; COG0811 biopolymer transport proteins
YP_208439.1	Best Blastp Hit: sp|O06432|TONB_NEIGO TonB protein >gi|2098621|gb|AAC45286.1| (U79563) TonB [Neisseria gonorrhoeae]
YP_208440.1	Best Blastp Hit: pir||B81049 conserved hypothetical protein NMB1731 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226986|gb|AAF42076.1| (AE002523) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1994 Zn-dependent proteases
YP_208441.1	cofactor involved in the reduction of disulfides
YP_208442.1	Best Blastp Hit: pir||F81049 GTP pyrophosphokinase NMB1735 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226990|gb|AAF42080.1| (AE002523) GTP pyrophosphokinase [Neisseria meningitidis MC58]; COG0317 Guanosine
YP_208443.1	Best Blastp Hit: pir||E81783 hypothetical protein NMA2118 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380741|emb|CAB85332.1| (AL162758) hypothetical protein [Neisseria meningitidis]
YP_208444.1	Best Blastp Hit: pir||D81783 hypothetical protein NMA2117 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380740|emb|CAB85331.1| (AL162758) hypothetical protein [Neisseria meningitidis]
YP_208445.1	Best Blastp Hit: possibly an alternative C terminus for MafB
YP_208446.1	Best Blastp Hit: possibly an alternative C terminus for MafB
YP_208447.1	Best Blastp Hit: sp|P45941|YQCF_BACSU hypothetical 21.5 KD protein in CWLA-CISA intergenic region >gi|7475297|pir||E69949 hypothetical protein yqcF - Bacillus subtilis >gi|1217878|dbj|BAA06963.1| (D32216) ORF95 [Bacillus subtilis] >gi|1303771|dbj|BAA12427.1| (D84432) YqcF [Bacillus subtilis] >gi|2635032|emb|CAB14528.1| (Z99117) yqcF [Bacillus subtilis]
YP_208448.1	Best Blastp Hit: pir||S24525 Ig heavy chain V region - mouse >gi|51255|emb|CAA47230.1| (X66668) immunoglobulin heavy chain [Mus musculus]
YP_208451.1	Best Blastp Hit: emb|CAC01359.1| (AL390975) hypothetical protein SCP8.21 [Streptomyces coelicolor A3(2)]
YP_208452.1	Best Blastp Hit: pir||H81782 adhesin MafB2 NMA2113 [imported] - Neisseria meningitidis  (group A strain Z2491) >gi|7380736|emb|CAB85327.1| (AL162758) adhesin MafB2 [Neisseria meningitidis]; protein MafB3
YP_208453.1	Best Blastp Hit: pir||G81782 adhesin MafA2 NMA2112 [imported] - Neisseria meningitidis  (group A strain Z2491) >gi|7380735|emb|CAB85326.1| (AL162758) adhesin MafA2 [Neisseria meningitidis]
YP_208454.1	Best Blastp Hit: pir||G81087 IS1016C2 transposase NMB1411 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226649|gb|AAF41773.1| (AE002489) IS1016C2 transposase [Neisseria meningitidis MC58]
YP_208455.1	Best Blastp Hit: emb|CAB84330.1| (AL162755) periplasmic protein [Neisseria meningitidis]; COG1101 ATPase components of various transport
YP_208456.1	Best Blastp Hit: emb|CAB84049.1| (AL162754) electron transfer flavoprotein-ubiquinone oxidoreductase [Neisseria meningitidis]; COG0644 Dehydrogenases (flavoproteins)
YP_208457.1	Best Blastp Hit: pir||G81183 protein disulfide isomerase NosL, probable NMB0580 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225808|gb|AAF41008.1| (AE002413) protein disulfide isomerase NosL,  [Neisseria meningitidis MC58] >gi|7379486|emb|CAB84048.1| (AL162754)  lipoprotein [Neisseria meningitidis]; protein NosL
YP_208458.1	Best Blastp Hit: pir||T44663 nosY protein [imported] - Bradyrhizobium japonicum >gi|3850617|emb|CAA05522.1| (AJ002531) nosY [Bradyrhizobium japonicum]; COG1277 Predicted membrane protein
YP_208459.1	Best Blastp Hit: pir||D81920 probable ABC-transporter ATP-binding protein NMA0763 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379484|emb|CAB84046.1| (AL162754)  ABC-transporter ATP-binding protein [Neisseria meningitidis]; COG1131 ABC-type multidrug transport system, ATPase
YP_208460.1	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_208461.1	part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor
YP_208463.1	catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein
YP_208464.1	Best Blastp Hit: gb|AAF41001.1| (AE002413) transcriptional regulator, AsnC family [Neisseria meningitidis MC58]; COG1522 Transcriptional regulators, Lrp family
YP_208465.1	Best Blastp Hit: pir||D81919 hypothetical protein NMA0755 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379476|emb|CAB84038.1| (AL162754) hypothetical protein NMA0755 [Neisseria meningitidis]
YP_208466.1	Best Blastp Hit: pir||C81919 probable membrane protein NMA0754 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379475|emb|CAB84037.1| (AL162754) membrane protein [Neisseria meningitidis]
YP_208467.1	Best Blastp Hit: gb|AAF40998.1| (AE002413) hypothetical protein [Neisseria meningitidis MC58]
YP_208468.1	Best Blastp Hit: pir||G81087 IS1016C2 transposase NMB1411 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226649|gb|AAF41773.1| (AE002489) IS1016C2 transposase [Neisseria meningitidis MC58]
YP_208469.1	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
YP_208470.1	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
YP_208471.1	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
YP_208472.1	Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm
YP_208473.1	Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.
YP_208474.1	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
YP_208476.1	Best Blastp Hit: pir||F81184 thiamin biosynthesis lipoprotein ApbE NMB0563 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225790|gb|AAF40991.1| (AE002412) thiamine biosynthesis lipoprotein ApbE [Neisseria meningitidis MC58]; COG1477 Membrane-associated lipoprotein ApbE
YP_208477.1	Best Blastp Hit: gb|AAF40990.1| (AE002412) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379466|emb|CAB84028.1| (AL162754)  periplasmic protein [Neisseria meningitidis]
YP_208478.1	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor
YP_208479.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); COG1045 Serine acetyltransferase
YP_208480.1	an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions
YP_208481.1	essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors
YP_208482.1	Best Blastp Hit: gb|AAF40984.1| (AE002411) repressor protein,  [Neisseria meningitidis MC58]
YP_208483.1	Best Blastp Hit: gb|AAF40983.1| (AE002411) hypothetical protein [Neisseria meningitidis MC58]
YP_208484.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_208485.1	Best Blastp Hit: gb|AAA25906.1| (M60717) nosA [Pseudomonas stutzeri]
YP_208486.1	Best Blastp Hit: dbj|BAA05664.1| (D28119) outer membrane protein C [Pseudomonas aeruginosa] >gi|9949962|gb|AAG07177.1|AE004797_12 (AE004797) outer membrane protein OprC [Pseudomonas aeruginosa]
YP_208487.1	Best Blastp Hit: pir||D72405 hypothetical protein - Thermotoga maritima (strain MSB8) >gi|4980699|gb|AAD35294.1|AE001705_5 (AE001705) hypothetical protein [Thermotoga maritima]; COG0715  taurine-binding periplasmic
YP_208488.1	Best Blastp Hit: gb|AAG07323.1|AE004811_6 (AE004811) probable permease of ABC taurine transporter [Pseudomonas aeruginosa]; COG0600 Uncharacterized permeases
YP_208489.1	Best Blastp Hit: gb|AAD31787.1|AF126201_5 (AF126201) AtsC [Pseudomonas putida]; COG1116 ABC-type nitrate transport system, ATPase
YP_208490.1	Best Blastp Hit: gb|AAB51227.1| (AF134905) CadD [Staphylococcus aureus]; protein CadB
YP_208491.1	binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity
YP_208492.1	Best Blastp Hit: gb|AAF40979.1| (AE002411) thiol:disulfide interchange protein DsbC [Neisseria meningitidis MC58] >gi|7379452|emb|CAB84014.1| (AL162754) thiol:disulphide interchange protein [Neisseria meningitidis]; COG1651 protein-disulfide isomerases DsbC/DsbG
YP_208493.1	Best Blastp Hit: pir||C81187 ABC transporter ATP-binding protein NMB0549 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225775|gb|AAF40978.1| (AE002410) ABC transporter ATP-binding protein [Neisseria meningitidis MC58]; COG0577 Predicted permease
YP_208494.1	Best Blastp Hit: emb|CAB84012.1| (AL162754) periplasmic protein [Neisseria meningitidis]; COG0845 Membrane permeases, predicted cation efflux
YP_208495.1	Best Blastp Hit: emb|CAB84011.1| (AL162754)  pilin [Neisseria meningitidis]
YP_208496.2	similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs
YP_208497.1	Best Blastp Hit: gb|AAF40974.1| (AE002410) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1196 Chromosome segregation ATPases
YP_208499.1	Best Blastp Hit: gb|AAG01335.1|AF288222_1 (AF288222)  outer membrane protein XadA [Xanthomonas oryzae pv. oryzae]
YP_208500.1	Best Blastp Hit: sp|P31489|YADA_YEREN invasin precursor (outer membrane adhesin) >gi|96987|pir||S04912 yopA protein - Yersinia enterocolitica plasmid pYV6471/76 >gi|48607|emb|CAA32086.1| (X13882) YadA [Yersinia enterocolitica]
YP_208502.1	catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine
YP_208503.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); COG1620 L-lactate permease; LctP
YP_208504.1	Best Blastp Hit: gb|AAF40971.1| (AE002410) hypothetical protein [Neisseria meningitidis MC58]
YP_208505.1	Best Blastp Hit: pir||C81186 hypothetical protein NMB0541 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225767|gb|AAF40970.1| (AE002410) hypothetical protein [Neisseria meningitidis MC58]
YP_208506.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_208507.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_208508.1	Best Blastp Hit: gb|AAF41787.1| (AE002492) hypothetical protein [Neisseria meningitidis MC58] >gi|7380281|emb|CAB84867.1| (AL162756)  integral membrane protein [Neisseria meningitidis]
YP_208509.1	Best Blastp Hit: pir||D81858 probable aminopeptidase NMA1640 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380282|emb|CAB84868.1| (AL162756)  aminopeptidase [Neisseria meningitidis]; COG0006 Xaa-Pro aminopeptidase
YP_208510.1	Best Blastp Hit: gb|AAF41506.1| (AE002461) hypothetical protein [Neisseria meningitidis MC58]
YP_208511.1	Best Blastp Hit: emb|CAB83729.1| (AL162753)  DNA helicase [Neisseria meningitidis]
YP_208512.1	Best Blastp Hit: pir||A81102 transcription-repair coupling factor NMB1281 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226520|gb|AAF41657.1| (AE002476) transcription-repair coupling factor [Neisseria meningitidis MC58]
YP_208514.1	Best Blastp Hit: gb|AAF41506.1| (AE002461) hypothetical protein [Neisseria meningitidis MC58]
YP_208517.1	Best Blastp Hit: gb|AAD38303.1|AF036242_3 (AF036242) unknown [Neisseria meningitidis]
YP_208518.1	involved in de novo purine biosynthesis
YP_208519.1	Best Blastp Hit: gb|AAF41386.1| (AE002449) chloride channel protein-related protein [Neisseria meningitidis MC58]; COG0038 Permease,  chloride channel
YP_208520.1	Best Blastp Hit: gb|AAF41385.1| (AE002449) phosphoserine phosphatase [Neisseria meningitidis MC58]; COG0560 Phosphoserine phosphatase
YP_208521.1	Best Blastp Hit: emb|CAB84440.1| (AL162755) hypothetical protein NMA1178 [Neisseria meningitidis]
YP_208522.1	forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm
YP_208523.1	Best Blastp Hit: pir||E81134 hypothetical protein NMB0979 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226219|gb|AAF41383.1| (AE002449) hypothetical protein [Neisseria meningitidis MC58]
YP_208524.1	catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme
YP_208525.1	Best Blastp Hit: pir||D81979 hypothetical protein NMA0600 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379335|emb|CAB83890.1| (AL162753) hypothetical protein NMA0600 [Neisseria meningitidis]; COG2249  NADPH-quinone reductase, YabF; protein MdaB
YP_208526.1	Best Blastp Hit: pir||E81979 probable lysR-family transcription regulator NMA0601 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379336|emb|CAB83891.1| (AL162753)  lysR-family transcriptional regulator [Neisseria meningitidis]; COG0583 Transcriptional regulators, LysR family
YP_208527.1	Best Blastp Hit: pir||B81195 conserved hypothetical protein NMB0479 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225707|gb|AAF40916.1| (AE002404) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7380635|emb|CAB85225.1| (AL162757) conserved hypothetical protein [Neisseria meningitidis]; COG2018 Uncharacterized ACR; distantly related
YP_208528.1	Best Blastp Hit: pir||A81195 hypothetical protein NMB0478 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225706|gb|AAF40915.1| (AE002404) hypothetical protein [Neisseria meningitidis MC58] >gi|7380636|emb|CAB85226.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208529.1	Best Blastp Hit: pir||G81194 hypothetical protein NMB0476 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225704|gb|AAF40913.1| (AE002404) hypothetical protein [Neisseria meningitidis MC58] >gi|7380638|emb|CAB85228.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208530.1	Best Blastp Hit: pir||G81194 hypothetical protein NMB0476 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225704|gb|AAF40913.1| (AE002404) hypothetical protein [Neisseria meningitidis MC58] >gi|7380638|emb|CAB85228.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208531.1	Best Blastp Hit: emb|CAB85230.1| (AL162757) conserved hypothetical protein [Neisseria meningitidis]; COG0500 SAM-dependent methyltransferases
YP_208532.1	Best Blastp Hit: pir||G81830 conserved hypothetical protein NMA2012 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380641|emb|CAB85231.1| (AL162757) conserved hypothetical protein [Neisseria meningitidis]
YP_208533.1	catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine
YP_208534.1	Best Blastp Hit: emb|CAB85233.1| (AL162757) hypothetical protein [Neisseria meningitidis]; COG1376 Uncharacterized ACR, ErfK family
YP_208535.1	Best Blastp Hit: pir||A81194 C4-dicarboxylate transporter NMB0470 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225698|gb|AAF40907.1| (AE002404) C4-dicarboxylate transporter [Neisseria meningitidis MC58]; COG0471 Cation transporters
YP_208536.1	catalyzes the formation of putrescine from agmatine
YP_208537.1	catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis
YP_208538.1	Best Blastp Hit: gb|AAF40904.1| (AE002403) hypothetical protein [Neisseria meningitidis MC58]
YP_208539.1	Catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_208540.1	Best Blastp Hit: pir||F81831 aspartate--tRNA ligase (EC 6.1.1.12) NMA2019 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380648|emb|CAB85238.1| (AL162757) aspartyl-tRNA synthetase [Neisseria meningitidis]; COG0173 Aspartyl-tRNA synthetase
YP_208541.1	Best Blastp Hit: pir||G81831 probable integral membrane protein NMA2020 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380649|emb|CAB85239.1| (AL162757)  integral membrane protein [Neisseria meningitidis]
YP_208542.1	Best Blastp Hit: emb|CAB85240.1| (AL162757) phopholipase [Neisseria meningitidis]
YP_208543.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_208544.1	Best Blastp Hit: pir||C81195 spermidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein NMB0462 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225689|gb|AAF40899.1| (AE002403) spermidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein [Neisseria meningitidis MC58]; COG0687 Spermidine/putrescine-binding periplasmic
YP_208545.1	Best Blastp Hit: gb|AAF74987.1| (AF124339) transferrin-binding protein A [Neisseria gonorrhoeae]; COG1629 Outer membrane receptor proteins, mostly
YP_208546.1	Best Blastp Hit: possibly phase variable - 8T residue homopolymer repeat in the coding sequence (ON); transferrin-binding protein B
YP_208548.1	Best Blastp Hit: emb|CAB83896.1| (AL162753) hypothetical protein NMA0606 [Neisseria meningitidis]
YP_208549.1	Best Blastp Hit: emb|CAB84863.1| (AL162756) hypothetical protein [Neisseria meningitidis]
YP_208550.1	converts L-glutamate to D-glutamate, a component of peptidoglycan
YP_208551.1	Best Blastp Hit: pir||F81832 conserved hypothetical protein NMA2027 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380656|emb|CAB85246.1| (AL162757) conserved hypothetical protein [Neisseria meningitidis]; COG0802 Predicted nucleotide-binding protein, YjeE
YP_208552.1	Best Blastp Hit: gb|AAF06680.1|AF163663_5 (AF058689)  N-acetylmuramoyl-L-alanine amidase-precursor AmiC [Neisseria meningitidis]; COG0860 N-acetylmuramoyl-L-alanine amidase
YP_208553.1	Best Blastp Hit: emb|CAB85248.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208554.1	Best Blastp Hit: gb|AAF40892.1| (AE002401) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0116 Predicted N6-adenine-specific DNA
YP_208555.1	Best Blastp Hit: pir||H81197 probable secreted protein NMA2031, NMB0454 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|6274535|gb|AAF06683.1|AF163663_8 (AF058689) Tou4 [Neisseria meningitidis] >gi|6449089|gb|AAF08818.1|AF194079_5 (AF194079) Tou4 [Neisseria meningitidis] >gi|7225679|gb|AAF40891.1| (AE002401) hypothetical protein [Neisseria meningitidis MC58] >gi|7380660|emb|CAB85250.1| (AL162757)  secreted protein [Neisseria meningitidis]
YP_208556.1	Best Blastp Hit: gb|AAF40890.1| (AE002401) mutT protein [Neisseria meningitidis MC58]; COG0494 NTP pyrophosphohydrolases (MutT family)
YP_208557.1	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids
YP_208558.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_208559.1	Best Blastp Hit: sp|Q9ZHY2|RECO_NEIGO DNA repair protein RECO (recombination protein O) >gi|4105531|gb|AAD05426.1| (AF047375) RecO [Neisseria gonorrhoeae]; COG1381 Recombination protein RecO
YP_208560.1	Best Blastp Hit: gb|AAD05425.1| (AF047375) PheA [Neisseria gonorrhoeae]; COG0077 Prephenate dehydratase
YP_208561.1	Best Blastp Hit: gb|AAF08825.1|AF194079_12 (AF194079) Bcr [Neisseria meningitidis]; COG0477 Permeases
YP_208562.1	Best Blastp Hit: gb|AAF40881.1| (AE002400) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0697 Predicted permeases
YP_208563.1	Best Blastp Hit: phase variable - 13 tandem repeats of CTCTT in the coding sequence (ON); outer membrane opacity protein D
YP_208564.1	Best Blastp Hit: pir||B81199 nitrilase NMB0441 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225666|gb|AAF40879.1| (AE002400) nitrilase [Neisseria meningitidis MC58]; COG0388 Predicted amidohydrolase
YP_208565.1	Best Blastp Hit: pir||A81775 probable oxidoreductase NMA2045 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380673|emb|CAB85263.1| (AL162758)  oxidoreductase [Neisseria meningitidis]; COG0287 Prephenate dehydrogenase
YP_208566.1	Best Blastp Hit: emb|CAB85264.1| (AL162758) hypothetical integral membrane protein [Neisseria meningitidis]
YP_208567.1	Best Blastp Hit: pir||C81775 hypothetical protein NMA2047 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380675|emb|CAB85265.1| (AL162758) hypothetical protein [Neisseria meningitidis]
YP_208568.1	Best Blastp Hit: emb|CAB63177.1| (AL133469) hypothetical protein SCM10.16c [Streptomyces coelicolor A3(2)]
YP_208569.1	Best Blastp Hit: pir||D81775 conserved hypothetical protein NMA2048 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380676|emb|CAB85266.1| (AL162758) conserved hypothetical protein [Neisseria meningitidis]; COG1959 Uncharacterized BCR, YjeB/RRF2 family
YP_208570.1	Best Blastp Hit: pir||E81198 conserved hypothetical protein NMB0436 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225661|gb|AAF40874.1| (AE002400) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0009  translation factor (SUA5)
YP_208571.1	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA
YP_208572.1	Best Blastp Hit: gb|AAF40870.1| (AE002399) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0730 Predicted permeases
YP_208573.1	catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity
YP_208574.1	catalyzes the formation of pyruvate and succinate from 2-methylisocitrate
YP_208575.1	Best Blastp Hit: pir||D81776 conserved hypothetical protein NMA2056 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380684|emb|CAB85274.1| (AL162758) conserved hypothetical protein [Neisseria meningitidis]; COG2252 Permeases
YP_208576.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_208577.1	Best Blastp Hit: pir||E81201 cell division protein FtsA NMB0426 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225649|gb|AAF40864.1| (AE002398) cell division protein FtsA [Neisseria meningitidis MC58]; COG0849 Predicted ATPases of the HSP70 class
YP_208578.1	Best Blastp Hit: pir||G81776 cell division protein NMA2059 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380687|emb|CAB85277.1| (AL162758) cell division protein [Neisseria meningitidis]; COG1589 Cell division septal protein FtsQ
YP_208579.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_208580.3	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_208581.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_208582.1	Best Blastp Hit: pir||C81777 cell division protein NMA2063 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380691|emb|CAB85281.1| (AL162758) cell division protein [Neisseria meningitidis]; COG0772 Bacterial cell division membrane protein
YP_208583.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_208584.1	Best Blastp Hit: gb|AAF40857.1| (AE002398) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0790 TPR repeat proteins
YP_208585.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_208586.1	Best Blastp Hit: emb|CAB85285.1| (AL162758) periplasmic protein [Neisseria meningitidis]
YP_208587.1	Best Blastp Hit: emb|CAB85286.1| (AL162758) UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis]; COG0770 UDP-N-acetylmuramyl pentapeptide synthase
YP_208588.1	Best Blastp Hit: gb|AAF12796.1|AF195057_1 (AF195057) DcaA [Neisseria gonorrhoeae]; COG2194 Predicted membrane-associated
YP_208589.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_208590.1	Best Blastp Hit: pir||S49090 penicillin-binding protein 2 - Neisseria gonorrhoeae >gi|509155|emb|CAA42191.1| (X59632) penicillin-binding protein  2 [Neisseria gonorrhoeae]; COG0768 Cell division protein
YP_208591.1	Best Blastp Hit: gb|AAF40851.1| (AE002397) cell division protein FtsL-related protein [Neisseria meningitidis MC58] >gi|7380699|emb|CAB85290.1| (AL162758) small periplasmic protein [Neisseria meningitidis]
YP_208592.1	Best Blastp Hit: pir||D81778 conserved hypothetical protein NMA2074 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380700|emb|CAB85291.1| (AL162758) conserved hypothetical protein [Neisseria meningitidis]; COG0275 Predicted S-adenosylmethionine-dependent
YP_208593.1	MraZ; UPF0040; crystal structure shows similarity to AbrB
YP_208594.1	Best Blastp Hit: pir||F81778 conserved hypothetical protein NMA2076 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380702|emb|CAB85293.1| (AL162758) conserved hypothetical protein [Neisseria meningitidis]; COG1565 Uncharacterized ACR
YP_208595.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_208596.1	Best Blastp Hit: gb|AAF40846.1| (AE002396) thiol:disulfide interchange protein DsbA [Neisseria meningitidis MC58]; COG0526 Thiol-disulfide isomerase and thioredoxins; thiol-disulfide isomerase
YP_208597.1	Best Blastp Hit: pir||C81203 conserved hypothetical protein NMB0406 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225628|gb|AAF40845.1| (AE002396) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_208598.1	Best Blastp Hit: pir||B81779 probable chelatase NMA2080 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380706|emb|CAB85297.1| (AL162758) chelatase [Neisseria meningitidis]; COG0606 Predicted ATPases
YP_208599.1	Best Blastp Hit: emb|CAB85298.1| (AL162758) hypothetical protein [Neisseria meningitidis]
YP_208600.1	Best Blastp Hit: pir||G81202 sodium/proline symporter NMB0402 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225624|gb|AAF40841.1| (AE002396) sodium/proline symporter [Neisseria meningitidis MC58] >gi|7380708|emb|CAB85299.1| (AL162758) sodium/proline symporter [Neisseria meningitidis]; COG0591 Na+/proline, Na+/panthothenate symporters
YP_208604.1	Best Blastp Hit: gb|AAC33455.1| (AF067083) outer membrane protein homolog [Vitreoscilla sp.]; COG1360 Flagellar motor protein MotB
YP_208606.1	Best Blastp Hit: pir||G81204 exodeoxyribonuclease III NMB0399 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225621|gb|AAF40839.1| (AE002395) exodeoxyribonuclease III [Neisseria meningitidis MC58]; COG0708 Exonuclease III
YP_208607.1	Best Blastp Hit: gb|AAF40838.1| (AE002395) transcriptional regulator, ArsR family [Neisseria meningitidis MC58]; COG0640 Predicted transcriptional regulators
YP_208610.1	Best Blastp Hit: pir||A81780 nicotinate-nucleotide pyrophosphorylase (carboxylating) (EC 2.4.2.19) NMA2088 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380713|emb|CAB85304.1| (AL162758) nicotinate-nucleotide pyrophosphorylase [Neisseria meningitidis]; COG0157 Nicotinate-nucleotide pyrophosphorylase
YP_208611.1	Best Blastp Hit: pir||C81204 conserved hypothetical protein NMB0395 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225617|gb|AAF40835.1| (AE002395) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1051 ADP-ribose pyrophosphatase
YP_208612.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_208613.1	Best Blastp Hit: pir||H81203 l-aspartate oxidase NMB0392 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225614|gb|AAF40832.1| (AE002395) l-aspartate oxidase [Neisseria meningitidis MC58]; COG0029 Aspartate oxidase
YP_208614.1	ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence
YP_208615.1	Best Blastp Hit: pir||G81205 phosphatidylglycerophosphatase (EC 3.1.3.27) A NMA2102 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225607|gb|AAF40826.1| (AE002394) phosphatidylglycerophosphatase A [Neisseria meningitidis MC58] >gi|7380727|emb|CAB85318.1| (AL162758) phosphatidylglycerophosphatase A [Neisseria meningitidis]; COG1267 Phosphatidylglycerophosphatase A
YP_208616.1	catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP
YP_208618.1	Best Blastp Hit: sp|P07050|OMP3_NEIGO outer membrane protein P.III precursor (gonococcal protein III) (PIII) >gi|78109|pir||A27894 outer membrane protein PIII precursor - Neisseria gonorrhoeae >gi|44890|emb|CAA28752.1| (X05105) PIII (AA 1-236) [Neisseria gonorrhoeae]; COG1360 Flagellar motor protein MotB
YP_208619.1	Best Blastp Hit: pir||B81782 transcription regulator NMA2106 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380730|emb|CAB85321.1| (AL162758) transcriptional regulator [Neisseria meningitidis]; COG0583 Transcriptional regulators, LysR family
YP_208620.1	Best Blastp Hit: gb|AAF40820.1| (AE002394) transcriptional regulator, Crp/Fnr family [Neisseria meningitidis MC58] >gi|7380731|emb|CAB85322.1| (AL162758) anaerobic transcriptional regulatory protein [Neisseria meningitidis]; COG0664 cAMP-binding domains - Catabolite gene
YP_208621.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_208622.1	Best Blastp Hit: gb|AAF40818.1| (AE002393) phosphate permease,  [Neisseria meningitidis MC58] >gi|7380733|emb|CAB85324.1| (AL162758)  phosphate permease [Neisseria meningitidis]; COG0306 Phosphate permease
YP_208624.1	catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling
YP_208625.1	Best Blastp Hit: pir||G81782 adhesin MafA2 NMA2112 [imported] - Neisseria meningitidis  (group A strain Z2491) >gi|7380735|emb|CAB85326.1| (AL162758) adhesin MafA2 [Neisseria meningitidis]; protein MafA3
YP_208626.1	Best Blastp Hit: pir||H81782 adhesin MafB2 NMA2113 [imported] - Neisseria meningitidis  (group A strain Z2491) >gi|7380736|emb|CAB85327.1| (AL162758) adhesin MafB2 [Neisseria meningitidis]; protein MafB4
YP_208627.1	Best Blastp Hit: emb|CAB85330.1| (AL162758) hypothetical protein [Neisseria meningitidis]
YP_208628.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON)
YP_208629.1	Best Blastp Hit: possibly an alternative C terminus for MafB
YP_208630.1	Best Blastp Hit: pir||A81207 hypothetical protein NMB0371 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225593|gb|AAF40813.1| (AE002393) hypothetical protein [Neisseria meningitidis MC58]
YP_208631.1	Best Blastp Hit: pir||H81206 hypothetical protein NMB0370 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225592|gb|AAF40812.1| (AE002393) hypothetical protein [Neisseria meningitidis MC58]
YP_208632.1	Best Blastp Hit: possibly an alternative C terminus for MafB
YP_208633.1	Best Blastp Hit: pir||T29187 hypothetical protein C55C3.3 - Caenorhabditis elegans >gi|1255819|gb|AAA96170.1| (U53335) weak similarity in one exon to C. reinhardtii kinesin-like protein 1 (PIR:A53953) and in another exon to Drosophila 150 kDa dynein-associated polypeptide (GLUED protein) (PIR:A53953) [Caenorhabditis elegans]
YP_208635.1	Best Blastp Hit: sp|P45941|YQCF_BACSU hypothetical 21.5 KD protein in CWLA-CISA intergenic region >gi|7475297|pir||E69949 hypothetical protein yqcF - Bacillus subtilis >gi|1217878|dbj|BAA06963.1| (D32216) ORF95 [Bacillus subtilis] >gi|1303771|dbj|BAA12427.1| (D84432) YqcF [Bacillus subtilis] >gi|2635032|emb|CAB14528.1| (Z99117) yqcF [Bacillus subtilis]
YP_208636.1	Best Blastp Hit: pir||D81174 hypothetical protein NMB0659 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225885|gb|AAF41078.1| (AE002420) hypothetical protein [Neisseria meningitidis MC58]
YP_208638.1	Best Blastp Hit: gb|AAC44904.1| (U82701) [Neisseria gonorrhoeae]
YP_208639.1	Best Blastp Hit: possibly phase variable - 8T residue homopolymer repeat in the coding sequence (ON); COG0477 Permeases; signal transducer protein
YP_208640.1	Best Blastp Hit: gb|AAC44901.1| (U82700) glutamine synthetase [Neisseria gonorrhoeae]; COG0174 Glutamine synthase
YP_208641.1	Best Blastp Hit: gb|AAB61771.1| (M84113) ORF1 [Neisseria gonorrhoeae]
YP_208642.1	Best Blastp Hit: gb|AAC44913.1| (U82842) shikimate dehydrogenase [Neisseria gonorrhoeae]; COG0169 Shikimate 5-dehydrogenase
YP_208643.1	glycosyltransferase; polymerizes glycan strands in the peptidoglycan
YP_208644.1	Best Blastp Hit: pir||G81933 hypothetical protein NMA0876 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379591|emb|CAB84156.1| (AL162754) hypothetical protein NMA0876 [Neisseria meningitidis]
YP_208645.1	Best Blastp Hit: emb|CAB85343.1| (AL162758)  ABC transporter ATP-binding protein [Neisseria meningitidis]; COG1137 ABC-type (unclassified) transport system
YP_208646.1	Best Blastp Hit: pir||B81208 conserved hypothetical protein NMB0355 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225577|gb|AAF40798.1| (AE002392) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7380753|emb|CAB85344.1| (AL162758)  outer membrane hypothetical protein [Neisseria meningitidis]; COG1934 Uncharacterized BCR
YP_208647.1	Best Blastp Hit: pir||A81208 hypothetical protein NMB0354 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225576|gb|AAF40797.1| (AE002392) hypothetical protein [Neisseria meningitidis MC58]
YP_208648.1	Best Blastp Hit: pir||C81785 conserved hypothetical protein NMA2134 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380755|emb|CAB85346.1| (AL162758) conserved hypothetical protein [Neisseria meningitidis]; COG1778 Uncharacterized proteins of HAD
YP_208649.1	Best Blastp Hit: pir||D81785 conserved hypothetical protein NMA2135 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380756|emb|CAB85347.1| (AL162758) conserved hypothetical protein [Neisseria meningitidis]; COG0794 Predicted sugar phosphate aminotransferases; polysialic acid capsule expression protein
YP_208650.1	catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate
YP_208651.1	this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu
YP_208652.1	Best Blastp Hit: pir||H81785 conserved hypothetical protein NMA2139 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380760|emb|CAB85351.1| (AL162758) conserved hypothetical protein [Neisseria meningitidis]; COG0042 Predicted TIM-barrel enzymes, possibly
YP_208653.1	Best Blastp Hit: emb|CAB96965.1| (AJ251482) hypothetical protein [Pseudomonas syringae pv. pisi]
YP_208655.1	Best Blastp Hit: pir||I41051 hsdM protein - Escherichia coli >gi|450688|emb|CAA53205.1| (X75452) hsdM gene of EcoprrI [Escherichia coli]
YP_208656.1	Best Blastp Hit: gi|10955548 translocator YopD [Yersinia enterocolitica] >gi|586795|sp|P37132|YOPD_YEREN YOPD protein >gi|4324335|gb|AAD16812.1| (AF102990) translocator YopD [Yersinia enterocolitica]
YP_208657.1	Best Blastp Hit: pir||A71978 methyl-accepting chemotaxis protein (MCP) - Helicobacter pylori (strain J99) >gi|4154575|gb|AAD05650.1| (AE001446) methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
YP_208658.1	Best Blastp Hit: pir||T13296 hypothetical protein 8 - Streptococcus phage phi-O1205 >gi|2444088|gb|AAC79524.1| (U88974) ORF8 [Streptococcus thermophilus temperate bacteriophage O1205]
YP_208659.1	Best Blastp Hit: emb|CAA61912.1| (X89769) fructose-1,6-bisphosphate aldolase [Euglena gracilis]
YP_208660.1	Best Blastp Hit: emb|CAB63672.1| (AJ251789) hypothetical protein [Lactobacillus casei bacteriophage A2]
YP_208662.1	Best Blastp Hit: gb|AAF41312.1| (AE002442) hypothetical protein [Neisseria meningitidis MC58]
YP_208666.1	Best Blastp Hit: gb|AAF30438.1|AE002103_3 (AE002103) hypothetical [Ureaplasma urealyticum]
YP_208667.1	Best Blastp Hit: gi|9628618 orf14 [Bacteriophage HP1] >gi|1730858|sp|P51716|YO14_BPHP1 hypothetical 14.9 KD protein in REP-HOL intergenic region (ORF14) >gi|2120197|pir||S69520 hypothetical protein 14 - phage HP1 >gi|1046241|gb|AAB09199.1| (U24159) orf14 [Bacteriophage HP1]
YP_208668.1	Best Blastp Hit: pir||S75025 hypothetical protein slr1999 - Synechocystis sp. (strain PCC 6803) >gi|1652970|dbj|BAA17887.1| (D90910) hypothetical protein [Synechocystis sp.]; COG1598 Uncharacterized ACR
YP_208670.1	Best Blastp Hit: pdb|1LLI|B Chain B, Lambda Repressor Mutant With Val 36 Replaced By Leu, Met 40 Replaced By Leu, And Val 47 Replaced By Ile (V36l,M40l,V47i) Complexed With Dna Operator >gi|640244|pdb|1LLI|A Chain A, Lambda Repressor Mutant With Val 36 Replaced By Leu, Met 40 Replaced By Leu, And Val 47 Replaced By Ile (V36l,M40l,V47i) Complexed With Dna Operator
YP_208674.1	Best Blastp Hit: pir||S30432 hypothetical protein - Streptomyces clavuligerus plasmid pSCL
YP_208676.1	Best Blastp Hit: pir||T03011 dnaC protein homolog - Salmonella typhimurium >gi|3294483|gb|AAC26072.1| (AF001386) unknown [Salmonella typhimurium]; COG1484 DNA replication protein DnaC
YP_208679.1	Best Blastp Hit: gb|AAF41506.1| (AE002461) hypothetical protein [Neisseria meningitidis MC58]
YP_208680.1	Best Blastp Hit: sp|Q37873|RUSA_BP82 crossover junction endodeoxyribonuclease RusA (Holliday junction nuclease RuSA) (Holliday juction resolvase) >gi|2120247|pir||S66583 crossover junction endodeoxyribonuclease (EC 3.1.22.4) rusA - phage 82 >gi|1051116|emb|CAA63330.1| (X92588) Can suppress the phenotype of ruv mutants [Bacteriophage 82]
YP_208681.1	Best Blastp Hit: gb|AAC82509.1| (U65994) pilin gene inverting protein homolog PivNG [Neisseria gonorrhoeae]
YP_208682.1	Best Blastp Hit: sp|Q09256|YQB3_CAEEL hypothetical 16.6 KD protein C30G12.3 in chromosome II >gi|7496734|pir||T15714 hypothetical protein C30G12.3 - Caenorhabditis elegans >gi|687835|gb|AAC46672.1| (U21319) C30G12.3 gene product [Caenorhabditis elegans]
YP_208683.1	Best Blastp Hit: gb|AAF42092.1| (AE002524) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_208684.1	Best Blastp Hit: gb|AAF42091.1| (AE002524) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_208685.1	Best Blastp Hit: emb|CAB85024.1| (AL162757) integral membrane protein [Neisseria meningitidis]
YP_208686.1	Best Blastp Hit: emb|CAB85025.1| (AL162757) hypothetical protein [Neisseria meningitidis]
YP_208687.1	Best Blastp Hit: pir||E81070 pilin gene inverting protein PivNM-1A NMB1552,NMB1625 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226799|gb|AAF41907.1| (AE002505) pilin gene inverting protein PivNM-1A [Neisseria meningitidis MC58] >gi|7226876|gb|AAF41976.1| (AE002513) pilin gene inverting protein PivNM-1B [Neisseria meningitidis MC58]
YP_208689.1	Best Blastp Hit: pir||B81142 hypothetical protein NMB0912 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226150|gb|AAF41320.1| (AE002443) hypothetical protein [Neisseria meningitidis MC58]
YP_208690.1	Best Blastp Hit: gb|AAF41305.1| (AE002442) hypothetical protein [Neisseria meningitidis MC58]
YP_208691.1	Best Blastp Hit: pir||A81144 hypothetical protein NMB0900 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226137|gb|AAF41308.1| (AE002442) hypothetical protein [Neisseria meningitidis MC58]
YP_208692.1	Best Blastp Hit: emb|CAB84546.1| (AL162755) hypothetical protein NMA1294 [Neisseria meningitidis]
YP_208693.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine
YP_208694.1	Best Blastp Hit: pir||B81786 hypothetical protein NMA2141 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380762|emb|CAB85353.1| (AL162758) hypothetical protein [Neisseria meningitidis]; COG0760 Parvulin-like peptidyl-prolyl isomerase
YP_208695.1	Best Blastp Hit: gb|AAF40788.1| (AE002391) cell-binding factor,  [Neisseria meningitidis MC58] >gi|7380763|emb|CAB85354.1| (AL162758)  periplasmi hypothetical protein [Neisseria meningitidis]; COG0760 Parvulin-like peptidyl-prolyl isomerase
YP_208696.1	Best Blastp Hit: gb|AAF40787.1| (AE002391) BolA/YrbA family protein [Neisseria meningitidis MC58]; COG0271 Stress-induced morphogen BolA (activity
YP_208697.1	unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity
YP_208698.1	Involved in cell division; probably involved in intracellular septation
YP_208699.1	Best Blastp Hit: gb|AAF40782.1| (AE002390) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_208700.1	Best Blastp Hit: emb|CAB85361.1| (AL162758)  inner membrane hypothetical protein [Neisseria meningitidis]
YP_208701.1	Best Blastp Hit: emb|CAB85362.1| (AL162758) hypothetical protein [Neisseria meningitidis]
YP_208702.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_208703.1	Catalyzes a key regulatory step in fatty acid biosynthesis
YP_208704.1	catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway
YP_208705.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_208706.1	Best Blastp Hit: pir||S77585 pilus assembly protein pilG - Neisseria gonorrhoeae >gi|639480|gb|AAC43469.1| (U32588) PilG [Neisseria gonorrhoeae]; COG1459 General secretion pathway protein F
YP_208707.1	Best Blastp Hit: sp|P33566|LEP4_NEIGO type 4 prepilin-like proteins leader peptide processing enzyme [includes: leader peptidase (prepilin peptidase); N-methyltransferase ] >gi|996088|gb|AAC43468.1| (U32588) PilD [Neisseria gonorrhoeae]; COG1989 Signal peptidase HopD, cleaves; type IV prepilin peptidase
YP_208708.1	Best Blastp Hit: pir||S77586 hypothetical protein X - Neisseria gonorrhoeae >gi|996087|gb|AAC43467.1| (U32588) OrfX [Neisseria gonorrhoeae]; COG0237 Predicted ATPase
YP_208709.1	Best Blastp Hit: pir||S77587 hypothetical protein Y - Neisseria gonorrhoeae >gi|996086|gb|AAC43466.1| (U32588) ORFY; non-essential for pilus assembly; [Neisseria gonorrhoeae]
YP_208710.1	Best Blastp Hit: sp|P37094|PILF_NEIGO type IV pilus assembly protein PilF >gi|420911|pir||S32914 pilF protein - Neisseria gonorrhoeae >gi|996085|gb|AAC43465.1| (U32588) PilF [Neisseria gonorrhoeae]; COG0630 Predicted ATPases involved in pili
YP_208711.1	Best Blastp Hit: pir||E81788 conserved hypothetical protein NMA2160 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380781|emb|CAB85372.1| (AL162758) conserved hypothetical protein [Neisseria meningitidis]
YP_208712.1	Best Blastp Hit: pir||A81213 octaprenyl-diphosphate synthase (EC 2.5.1.-) NMA2161 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225547|gb|AAF40771.1| (AE002389) octaprenyl-diphosphate synthase [Neisseria meningitidis MC58] >gi|7380782|emb|CAB85373.1| (AL162758) octaprenyl-diphosphate synthase [Neisseria meningitidis]; COG0142 Geranylgeranyl pyrophosphate synthase
YP_208713.1	Best Blastp Hit: pir||H81212 50S ribosomal protein L21 NMB0325 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225546|gb|AAF40770.1| (AE002389) 50S ribosomal protein L21 [Neisseria meningitidis MC58] >gi|7380783|emb|CAB85374.1| (AL162758) 50S ribosomal protein L21 [Neisseria meningitidis]; COG0261 Ribosomal protein L21
YP_208714.1	involved in the peptidyltransferase reaction during translation
YP_208715.1	Best Blastp Hit: emb|CAB85376.1| (AL162758) monooxygenase [Neisseria meningitidis]; COG0654 2-Octaprenyl-6-metoxyphenol hydroxylase
YP_208716.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_208717.1	required for 70S ribosome assembly
YP_208718.1	Best Blastp Hit: emb|CAB85379.1| (AL162758) hypothetical protein [Neisseria meningitidis]
YP_208719.1	Best Blastp Hit: gb|AAD54074.1| (AF132910) efflux pump protein FarB [Neisseria gonorrhoeae]; COG0477 Permeases
YP_208720.1	Best Blastp Hit: possibly phase variable - 8T residue homopolymer repeat in the coding sequence (ON); COG1566 Multidrug resistance efflux pump
YP_208721.1	NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis
YP_208722.1	Best Blastp Hit: pir||B81214 conserved hypothetical protein NMB0316 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225536|gb|AAF40761.1| (AE002388) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1738 Uncharacterized ACR, YhhQ family
YP_208723.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); COG0739 Membrane proteins related to
YP_208724.1	Best Blastp Hit: pir||B81790 hypothetical protein NMA2173 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380794|emb|CAB85385.1| (AL162758) hypothetical protein [Neisseria meningitidis]
YP_208725.1	Best Blastp Hit: emb|CAB85386.1| (AL162758) conserved hypothetical protein [Neisseria meningitidis]
YP_208726.1	Best Blastp Hit: gb|AAF40757.1| (AE002388) hypothetical protein [Neisseria meningitidis MC58] >gi|7380797|emb|CAB85388.1| (AL162758) hypothetical protein [Neisseria meningitidis]
YP_208728.1	Best Blastp Hit: pir||F81790 conserved hypothetical inner membrane protein NMA2177 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380798|emb|CAB85389.1| (AL162758) conserved hypothetical inner membrane protein [Neisseria meningitidis]; COG1981 Predicted membrane protein
YP_208729.1	Best Blastp Hit: pir||D81213 conserved hypothetical protein NMB0309 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225530|gb|AAF40755.1| (AE002388) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_208730.1	Best Blastp Hit: sp|P04174|DYR_NEIGO dihydrofolate reductase >gi|66103|pir||RDNHD dihydrofolate reductase (EC 1.5.1.3) - Neisseria gonorrhoeae; COG0262 Dihydrofolate reductase
YP_208731.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive
YP_208732.1	Best Blastp Hit: gb|AAF40747.1| (AE002386) CcsA-related protein [Neisseria meningitidis MC58]
YP_208733.1	Best Blastp Hit: pir||F81215 signal recognition particle protein NMB0295 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225519|gb|AAF40746.1| (AE002386) signal recognition particle protein [Neisseria meningitidis MC58]; COG0541 Signal recognition particle GTPase Ffh
YP_208734.1	Best Blastp Hit: gb|AAC98737.1| (AF052749) unknown [Pseudomonas putida]; COG1145 Ferredoxin 2
YP_208735.1	Best Blastp Hit: pir||F81792 hypothetical protein NMA2195 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|6900420|emb|CAB72030.1| (AJ391261) hypothetical protein [Neisseria meningitidis] >gi|7380814|emb|CAB85406.1| (AL162758) hypothetical protein [Neisseria meningitidis]
YP_208736.1	Best Blastp Hit: gb|AAC82509.1| (U65994) pilin gene inverting protein homolog PivNG [Neisseria gonorrhoeae]; invertase related gene 8
YP_208737.1	Best Blastp Hit: pir||F81792 hypothetical protein NMA2195 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|6900420|emb|CAB72030.1| (AJ391261) hypothetical protein [Neisseria meningitidis] >gi|7380814|emb|CAB85406.1| (AL162758) hypothetical protein [Neisseria meningitidis]
YP_208738.1	Best Blastp Hit: gb|AAF40742.1| (AE002386) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7380815|emb|CAB85407.1| (AL162758) conserved hypothetical inner membrane protein [Neisseria meningitidis]
YP_208739.1	Best Blastp Hit: gb|AAF40741.1| (AE002386) transcriptional regulator,  [Neisseria meningitidis MC58]; COG0583 Transcriptional regulators, LysR family
YP_208740.1	Best Blastp Hit: emb|CAB85409.1| (AL162758) deoxyribodopyrimidine photolyase [Neisseria meningitidis]; COG0415 Deoxypyrimidine photolyase
YP_208741.1	helicase involved in DNA repair and perhaps also replication
YP_208742.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON)
YP_208743.1	Best Blastp Hit: emb|CAB85413.1| (AL162758)  inner membrane trans-acylase [Neisseria meningitidis]; COG1835 Predicted acyltransferases
YP_208744.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_208745.1	Best Blastp Hit: emb|CAB85415.1| (AL162758) hypothetical protein [Neisseria meningitidis]; COG1611 Predicted Rossmann fold nucleotide-binding
YP_208746.1	Best Blastp Hit: emb|CAB85416.1| (AL162758) hypothetical protein [Neisseria meningitidis]; COG0557 Exoribonucleases
YP_208747.1	Best Blastp Hit: >pir||B81216 peptidyl-prolyl cis-trans isomerase NMB0281 [imported] - Neisseria meningitidis (group B strain MD58) gb|AAF40735.1| (AE002385) peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis MC58]; COG0760 Parvulin-like peptidyl-prolyl isomerase
YP_208748.1	Best Blastp Hit: emb|CAB85418.1| (AL162758) solvent tolerance protein [Neisseria meningitidis]; COG1452 Organic solvent tolerance protein OstA
YP_208749.1	Best Blastp Hit: pir||C81794 hypothetical protein NMA2208 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380827|emb|CAB85419.1| (AL162758) hypothetical protein [Neisseria meningitidis]
YP_208750.1	Best Blastp Hit: gb|AAF40732.1| (AE002384) thiol:disulfide interchange protein DsbA [Neisseria meningitidis MC58]; COG0526 Thiol-disulfide isomerase and thioredoxins
YP_208751.1	Best Blastp Hit: pir||B81217 virulence factor MviN NMB0277 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225502|gb|AAF40731.1| (AE002384) virulence factor MviN [Neisseria meningitidis MC58]; COG0728 Uncharacterized membrane protein
YP_208752.1	Best Blastp Hit: gb|AAF40730.1| (AE002384) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0429 Predicted hydrolase of the
YP_208754.1	involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water
YP_208755.1	Best Blastp Hit: gb|AAD05424.1| (AF047374) RecQ [Neisseria gonorrhoeae]; COG0514 Superfamily II DNA helicases, RecQ family; RecQ protein
YP_208756.1	Best Blastp Hit: emb|CAB85425.1| (AL162758) hypothetical protein [Neisseria meningitidis]
YP_208757.1	Best Blastp Hit: gb|AAF40725.1| (AE002383) hypothetical protein [Neisseria meningitidis MC58]
YP_208758.1	Best Blastp Hit: emb|CAB85427.1| (AL162758) hydrolase [Neisseria meningitidis]; COG0570 BioH, catalyzes some early step in biotin
YP_208759.1	Best Blastp Hit: emb|CAB85428.1| (AL162758) hypothetical protein [Neisseria meningitidis]; COG1040 Predicted amidophosphoribosyl transferases
YP_208760.1	Best Blastp Hit: gb|AAF40722.1| (AE002383) RNA methyltransferase, TrmH family [Neisseria meningitidis MC58]; COG0219 Predicted rRNA methylase (SpoU class)
YP_208761.1	Best Blastp Hit: gb|AAF40721.1| (AE002383) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0797 Lipoproteins
YP_208762.1	Best Blastp Hit: pir||C81218 conserved hypothetical protein NMB0266 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225490|gb|AAF40720.1| (AE002383) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_208763.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_208764.1	Best Blastp Hit: emb|CAB85433.1| (AL162758) hypothetical protein [Neisseria meningitidis]
YP_208765.1	Best Blastp Hit: emb|CAB85434.1| (AL162758)  ABC transporter [Neisseria meningitidis]; COG1132 ABC-type multidrug/protein/lipid
YP_208766.1	EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity
YP_208767.1	catalyzes the bidirectional exonucleolytic cleavage of DNA
YP_208768.1	Best Blastp Hit: pir||E81796 geranyltranstransferase (EC 2.5.1.10) NMA2226 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380845|emb|CAB85437.1| (AL162758) geranyltranstransferase [Neisseria meningitidis]; COG0142 Geranylgeranyl pyrophosphate synthase
YP_208769.1	Best Blastp Hit: pir||F81796 hypothetical inner membrane protein NMA2227 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380846|emb|CAB85438.1| (AL162758) hypothetical inner membrane protei [Neisseria meningitidis]
YP_208770.1	Catalyzes the transfer of electrons from NADH to quinone
YP_208771.1	Catalyzes the transfer of electrons from NADH to quinone
YP_208772.1	Best Blastp Hit: pir||A71813 hypothetical protein jhp1392 - Helicobacter pylori (strain J99) >gi|4156012|gb|AAD06973.1| (AE001561)  [Helicobacter pylori J99]
YP_208773.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_208774.1	Catalyzes the transfer of electrons from NADH to quinone
YP_208775.1	Best Blastp Hit: gb|AAF40707.1| (AE002382) NADH dehydrogenase I, J subunit [Neisseria meningitidis MC58]
YP_208776.1	Catalyzes the transfer of electrons from NADH to quinone
YP_208777.1	Best Blastp Hit: pir||E81219 NADH dehydrogenase I, H chain NMB0250 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225473|gb|AAF40704.1| (AE002382) NADH dehydrogenase I, H subunit [Neisseria meningitidis MC58]; COG1005 NADH-ubiquinone oxidoreductase subunit 1
YP_208778.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_208779.1	Best Blastp Hit: pir||D81222 NADH dehydrogenase I, F chain NMB0246 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225468|gb|AAF40700.1| (AE002381) NADH dehydrogenase I, F subunit [Neisseria meningitidis MC58]; COG1894 NADH-ubiquinone oxidoreductase, NADH-binding
YP_208780.1	Catalyzes the transfer of electrons from NADH to quinone
YP_208781.1	Catalyzes the transfer of electrons from NADH to quinone
YP_208782.1	Catalyzes the transfer of electrons from NADH to quinone
YP_208783.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_208784.1	Best Blastp Hit: pir||G81992 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain A NMA0019 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378797|emb|CAB83339.1| (AL162752) NADH dehydrogenase I chain A [Neisseria meningitidis]; COG0838 NADH-ubiquinone oxidoreductase subunit 3
YP_208785.1	Best Blastp Hit: pir||H81992 probable integral membrane protein NMA0020 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378798|emb|CAB83340.1| (AL162752)  integral membrane protein [Neisseria meningitidis]; COG0421 Spermidine synthase
YP_208786.1	Best Blastp Hit: pir||E81221 probable integral membrane protein NMA0021 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225461|gb|AAF40693.1| (AE002381) hypothetical protein [Neisseria meningitidis MC58] >gi|7378799|emb|CAB83341.1| (AL162752)  integral membrane protein [Neisseria meningitidis]
YP_208787.1	MafI3
YP_208788.1	Best Blastp Hit: emb|CAB83579.1| (AL162752) truncated pilin [Neisseria meningitidis]
YP_208790.1	Best Blastp Hit: pir||F81993 DNA helicase II (EC 3.6.1.-) NMA0027 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|6900436|emb|CAB72035.1| (AJ391262) DNA helicase II [Neisseria meningitidis] >gi|7378804|emb|CAB83346.1| (AL162752) DNA helicase II [Neisseria meningitidis]; COG0210 Superfamily I DNA and RNA helicases
YP_208791.1	catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme
YP_208792.1	Best Blastp Hit: gb|AAF40679.1| (AE002380) hypothetical protein [Neisseria meningitidis MC58]
YP_208793.1	Best Blastp Hit: pir||H81222 hypothetical protein NMB0222 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225445|gb|AAF40678.1| (AE002380) hypothetical protein [Neisseria meningitidis MC58] >gi|7378813|emb|CAB83355.1| (AL162752) hypothetical protein NMA0037 [Neisseria meningitidis]
YP_208794.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors
YP_208795.1	carries the fatty acid chain in fatty acid biosynthesis
YP_208796.1	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_208797.1	Best Blastp Hit: possibly phase variable - 10G residue homopolymer repeat in the coding sequence (ON); COG0438 Glycosyltransferases I; protein PglA
YP_208798.1	Best Blastp Hit: pir||D81224 catalase (EC 1.11.1.6) NMA0050 [similarity] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225438|gb|AAF40672.1| (AE002379) catalase [Neisseria meningitidis MC58] >gi|7378825|emb|CAB83367.1| (AL162752) catalase [Neisseria meningitidis]; COG0753 Catalase; protein KatA
YP_208799.1	Best Blastp Hit: pir||C81224 conserved hypothetical protein NMB0215 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225437|gb|AAF40671.1| (AE002379) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1971 Predicted membrane protein
YP_208800.1	Best Blastp Hit: pir||B70313 cytochrome-c peroxidase (EC 1.11.1.5) - Aquifex aeolicus >gi|2982865|gb|AAC06485.1| (AE000675) cytochrome c peroxidase [Aquifex aeolicus]; COG1858 Cytochrome c peroxidase; protein CcpR
YP_208801.1	Best Blastp Hit: pir||G81996 oligopeptidase A (EC 3.4.24.70) NMA0054 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378829|emb|CAB83371.1| (AL162752) oligopeptidase A [Neisseria meningitidis]; COG0339 Zn-dependent oligopeptidases
YP_208802.1	Best Blastp Hit: pir||E81225 hypothetical protein NMB0213 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225434|gb|AAF40669.1| (AE002378) hypothetical protein [Neisseria meningitidis MC58]
YP_208803.1	negatively supercoils closed circular double-stranded DNA
YP_208804.1	Best Blastp Hit: pir||C81225 L-serine dehydratase NMB0211 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225432|gb|AAF40667.1| (AE002378) L-serine dehydratase [Neisseria meningitidis MC58]; COG1760 L-serine deaminase
YP_208805.1	Best Blastp Hit: gb|AAF40666.1| (AE002378) glutathione-regulated potassium-efflux system protein [Neisseria meningitidis MC58]; COG0475 K efflux system, membrane domain
YP_208806.1	Best Blastp Hit: emb|CAB83377.1| (AL162752) ferredoxin [Neisseria meningitidis]; COG1145 Ferredoxin 2
YP_208807.1	catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate
YP_208808.1	Best Blastp Hit: gb|AAF42457.1| (AE002563) hypothetical protein [Neisseria meningitidis MC58]
YP_208809.1	leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys
YP_208810.1	Best Blastp Hit: sp|Q51008|FUR_NEIGO ferric uptake regulation protein (ferric uptake regulator) >gi|349012|gb|AAA72351.1| (L11361) [Neisseria gonorrheae fur gene homologue, complete cds.], gene product [Neisseria gonorrhoeae]; COG0735 Ferric uptake regulation protein
YP_208811.1	Best Blastp Hit: pir||H81997 probable lipoprotein NMA0065 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378838|emb|CAB83381.1| (AL162752) lipoprotein [Neisseria meningitidis]
YP_208812.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_208813.1	catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM
YP_208814.1	Best Blastp Hit: pir||E81998 pseudouridylate synthase (EC 4.2.1.70) C rRNA-specific NMA0070 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378843|emb|CAB83386.1| (AL162752) ribosomal large subunit pseudouridine synthase C [Neisseria meningitidis]; COG0564 Predicted pseudouridylate synthase 2
YP_208815.1	Best Blastp Hit: gb|AAF40654.1| (AE002377) hypothetical protein [Neisseria meningitidis MC58]
YP_208816.1	Best Blastp Hit: gb|AAF40653.1| (AE002377) ribonuclease E [Neisseria meningitidis MC58]; COG1530 Ribonucleases G and E
YP_208817.1	catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate)
YP_208818.1	Best Blastp Hit: pir||G81227 probable amino-acid transport protein NMA0073 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225414|gb|AAF40651.1| (AE002376) amino acid symporter,  [Neisseria meningitidis MC58] >gi|7378846|emb|CAB83389.1| (AL162752)  amino-acid transport protein [Neisseria meningitidis]; COG1115 Sodium-alanine symporters
YP_208819.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_208820.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_208821.1	Best Blastp Hit: pir||C81999 parA family protein NMA0076 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378849|emb|CAB83392.1| (AL162752) parA family protein [Neisseria meningitidis]; COG1192 ATPases involved in chromosome partitioning
YP_208822.1	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_208823.1	Best Blastp Hit: emb|CAB83394.1| (AL162752) integral membrane protein [Neisseria meningitidis]
YP_208824.1	Best Blastp Hit: gb|AAF40645.1| (AE002376) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_208825.1	Best Blastp Hit: pir||CTNHP2 site-specific DNA-methyltransferase (cytosine-specific) (EC 2.1.1.73) NgoPII - Neisseria gonorrhoeae >gi|44873|emb|CAA30038.1| (X06965) NgoPII methylase (AA 1-341) [Neisseria gonorrhoeae] >gi|44888|emb|CAA36888.1| (X52661) NgoPII restriction and modification [Neisseria gonorrhoeae] >gi|293960|gb|AAA17019.1| (L14564) cytosine methylase [Neisseria gonorrhoeae] >gi|227054|prf||1613419B NgoPII methylase [Neisseria gonorrhoeae]; COG0270 Site-specific DNA methylase dcm; site-specific DNA-methyltransferase M. NgoPII
YP_208826.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_208827.1	Best Blastp Hit: pir||C81229 undecaprenyl pyrophosphate synthetase NMB0186 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225405|gb|AAF40643.1| (AE002375) undecaprenyl pyrophosphate synthetase [Neisseria meningitidis MC58]; COG0020 Undecaprenyl pyrophosphate synthase
YP_208828.1	Best Blastp Hit: pir||A82000 phosphatidate cytidylyltransferase (EC 2.7.7.41) NMA0082 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378855|emb|CAB83398.1| (AL162752) phosphatidate cytidylyltransferase [Neisseria meningitidis]; COG0575 CDP-diglyceride synthetase
YP_208829.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_208830.1	Best Blastp Hit: emb|CAB83400.1| (AL162752) integral membrane protein [Neisseria meningitidis]; COG0750 Predicted membrane-associated Zn-dependent
YP_208831.1	Best Blastp Hit: gb|AAC17600.1| (U81959) outer membrane protein [Neisseria gonorrhoeae]; COG0729 Predicted outer membrane protein
YP_208832.1	Best Blastp Hit: gb|AAF40638.1| (AE002375) outer membrane protein OmpH,  [Neisseria meningitidis MC58]
YP_208833.1	adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis
YP_208834.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_208835.1	Best Blastp Hit: pir||H82000 hypothetical protein NMA0089 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378862|emb|CAB83405.1| (AL162752) hypothetical protein NMA0089 [Neisseria meningitidis]
YP_208836.1	catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis
YP_208837.1	Best Blastp Hit: pir||B81228 sodium/alanine symporter, probable NMB0177 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225396|gb|AAF40634.1| (AE002375) sodium/alanine symporter,  [Neisseria meningitidis MC58]; COG1115 Sodium-alanine symporters
YP_208838.1	catalyzes the oxidative deamination of D-amino acids
YP_208839.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_208841.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_208842.1	Best Blastp Hit: gb|AAC79472.1| (AF090803) outer membrane protein I precursor [Neisseria gonorrhoeae]; por
YP_208843.1	Best Blastp Hit: pir||H82001 probable hydrogen peroxide-inducible genes activator NMA0098 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378870|emb|CAB83413.1| (AL162752)  hydrogen peroxide-inducible genes activator [Neisseria meningitidis]; COG0583 Transcriptional regulators, LysR family
YP_208844.1	works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell
YP_208845.1	blocks the formation of polar Z-ring septums
YP_208846.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_208847.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_208848.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_208849.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_208850.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_208851.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_208852.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_208853.1	late assembly protein
YP_208854.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_208855.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_208856.1	binds 5S rRNA along with protein L5 and L25
YP_208857.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_208858.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_208859.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif
YP_208860.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_208861.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_208862.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_208863.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_208864.1	one of the stabilizing components for the large ribosomal subunit
YP_208865.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_208866.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_208867.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_208868.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_208869.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_208870.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_208871.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_208872.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_208873.1	Best Blastp Hit: emb|CAB83446.1| (AL162752) hypothetical protein NMA0132 [Neisseria meningitidis]
YP_208874.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_208875.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_208876.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_208877.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_208878.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_208879.1	Best Blastp Hit: emb|CAB83453.1| (AL162752) hypothetical protein NMA0138 [Neisseria meningitidis]
YP_208880.1	Best Blastp Hit: gb|AAF41823.1| (AE002496) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_208881.1	Best Blastp Hit: gb|AAF40593.1| (AE002372) hypothetical protein [Neisseria meningitidis MC58]
YP_208882.1	Best Blastp Hit: possibly phase variable - 8G residue homopolymer repeat in the coding sequence (ON)
YP_208883.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_208884.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_208885.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_208886.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_208887.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_208888.1	binds directly to 23S ribosomal RNA
YP_208889.1	Modulates Rho-dependent transcription termination
YP_208890.1	forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_208891.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_208892.1	Best Blastp Hit: pir||H81234 ferredoxin, 4Fe-4S bacterial type NMB0123 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225340|gb|AAF40582.1| (AE002371) ferredoxin, 4Fe-4S bacterial type [Neisseria meningitidis MC58]; COG1145 Ferredoxin 2
YP_208893.1	Best Blastp Hit: emb|CAB83466.1| (AL162752) possible DNA methylase [Neisseria meningitidis]; COG0742 N6-adenine-specific methylase
YP_208894.1	Best Blastp Hit: pir||F82008 hypothetical protein NMA0153 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378924|emb|CAB83467.1| (AL162752) hypothetical protein NMA0153 [Neisseria meningitidis]
YP_208895.1	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining; maintains net negative superhelicity
YP_208896.1	Best Blastp Hit: gb|AAF40576.1| (AE002370) smg protein,  [Neisseria meningitidis MC58] >gi|7378928|emb|CAB83471.1| (AL162752) hypothetical protein NMA0157 [Neisseria meningitidis]
YP_208897.1	Best Blastp Hit: pir||C82009 DprA homolog NMA0158 [imported] - Neisseria meningitidis  (group A strain Z2491) >gi|7378929|emb|CAB83472.1| (AL162752) DprA homolog [Neisseria meningitidis]; COG0758 protein involved in DNA uptake
YP_208898.1	Best Blastp Hit: gb|AAF40574.1| (AE002370) nitrogen assimilation regulatory protein NtrX [Neisseria meningitidis MC58]; COG2204 AAA superfamily ATPases with N-terminal
YP_208899.1	Best Blastp Hit: emb|CAB83474.1| (AL162752) two-component sensor [Neisseria meningitidis]; COG0642 Sensory transduction histidine kinases
YP_208900.1	Best Blastp Hit: pir||F82009 hypothetical protein NMA0161 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378932|emb|CAB83475.1| (AL162752) hypothetical protein NMA0161 [Neisseria meningitidis]
YP_208901.1	Best Blastp Hit: emb|CAB83476.1| (AL162752) SUN homolog [Neisseria meningitidis]; COG0144 Predicted rRNA methylase
YP_208902.1	Best Blastp Hit: pir||F81238 methionyl-tRNA formyltransferase NMB0111 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225326|gb|AAF40570.1| (AE002369) methionyl-tRNA formyltransferase [Neisseria meningitidis MC58]; COG0223 Methionyl-tRNA formyltransferase
YP_208903.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_208905.1	Best Blastp Hit: pir||D81238 hypothetical protein NMB0109 - Neisseria meningitidis (group B strain MD58) >gi|7225324|gb|AAF40568.1| (AE002369) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1652 Uncharacterized BCR
YP_208906.1	Best Blastp Hit: gb|AAA96487.1| (L36381) [Neisseria gonorrhoeae]
YP_208907.1	Best Blastp Hit: pir||C82010 probable integral membrane protein NMA0166 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378937|emb|CAB83480.1| (AL162752)  integral membrane protein [Neisseria meningitidis]
YP_208908.1	involved in the allosteric regulation of aspartate carbamoyltransferase
YP_208909.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_208910.1	Best Blastp Hit: pir||F82010 hypothetical protein NMA0169 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378940|emb|CAB83483.1| (AL162752) hypothetical protein NMA0169 [Neisseria meningitidis]; COG0454 Predicted acetyltransferases
YP_208911.1	Best Blastp Hit: possibly phase variable - 8T residue homopolymer repeat in the coding sequence (ON)
YP_208912.1	Best Blastp Hit: gb|AAF40562.1| (AE002369) bacteriocin resistance protein,  [Neisseria meningitidis MC58] >gi|7378945|emb|CAB83488.1| (AL162752) hypothetical protein NMA0173 [Neisseria meningitidis]; COG1101 ATPase components of various transport
YP_208913.1	Best Blastp Hit: pir||D82011 probable integral membrane protein NMA0174 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378946|emb|CAB83489.1| (AL162752)  integral membrane protein [Neisseria meningitidis]
YP_208914.1	Best Blastp Hit: pir||B81239 pyruvate kinase II NMB0089 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225307|gb|AAF40552.1| (AE002368) pyruvate kinase II [Neisseria meningitidis MC58]; COG0469 Pyruvate kinase
YP_208915.1	Best Blastp Hit: emb|CAB83494.1| (AL162752) hypothetical protein NMA0179 [Neisseria meningitidis]
YP_208916.1	Best Blastp Hit: pir||G81075 hypothetical protein NMB1507 [imported] - Neisseria meningitidis (group B strain MD58) >gi|4582968|gb|AAD24874.1|AF073777_2 (AF073777) unknown [Neisseria meningitidis] >gi|7226750|gb|AAF41863.1| (AE002500) hypothetical protein [Neisseria meningitidis MC58]
YP_208917.1	Best Blastp Hit: gb|AAF40550.1| (AE002368) hypothetical protein [Neisseria meningitidis MC58] >gi|7378953|emb|CAB83496.1| (AL162752) hypothetical protein NMA0181 [Neisseria meningitidis]
YP_208918.1	Best Blastp Hit: pir||G81238 hypothetical protein NMB0086 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225304|gb|AAF40549.1| (AE002368) hypothetical protein [Neisseria meningitidis MC58]
YP_208919.1	Best Blastp Hit: pir||F81240 sodium/glutamate symporter NMB0085 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225302|gb|AAF40548.1| (AE002367) sodium/glutamate symporter [Neisseria meningitidis MC58]; COG0786 Glutamate permease; protein GltS
YP_208920.1	Best Blastp Hit: gb|AAC45837.1| (AF001598) similar to Bordetella pertussis toxin accessory protein encoded by GenBank Accession Number X95386 [Neisseria gonorrhoeae]; COG2183 Predicted RNA binding protein, contains S1
YP_208921.1	Best Blastp Hit: gb|AAC45839.1| (AF001598) N6-methyladenine methyltransferase [Neisseria gonorrhoeae]; protein DamH
YP_208922.1	Best Blastp Hit: gb|AAC45838.1| (AF001598) 5-methylcytosine methyltransferase [Neisseria gonorrhoeae]; COG0270 Site-specific DNA methylase dcm
YP_208923.1	Best Blastp Hit: sp|P57072|YHGF_NEIMA hypothetical protein NMA0194 >gi|11278680|pir||E82013 probable transcription accessory protein NMA0194 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378963|emb|CAB83508.1| (AL162752)  transcriptional accessory protein [Neisseria meningitidis]; COG2183 Predicted RNA binding protein, contains S1
YP_208924.1	Best Blastp Hit: sp|Q05026|GALE_NEIGO UDP-glucose 4-epimerase (galactowaldenase) (UDP-galactose 4-epimerase) >gi|486715|pir||S34984 UDPglucose 4-epimerase (EC 5.1.3.2) - Neisseria gonorrhoeae >gi|1051296|emb|CAA79721.1| (Z21508) UDP-glucose 4-epimerase [Neisseria gonorrhoeae]; COG1087 UDP-glucose 4-epimerase
YP_208925.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); COG1088 dTDP-D-glucose 4,6-dehydratase
YP_208926.1	Best Blastp Hit: sp|P37762|RFBA_NEIGO glucose-1-phosphate thymidylyltransferase (DTDP-glucose synthase) (DTDP-glucose pyrophosphorylase) >gi|628591|pir||S47046 glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) - Neisseria gonorrhoeae >gi|520897|emb|CAA83653.1| (Z32742) Glucose-1-phosphate thymidylyltransferase [Neisseria gonorrhoeae] >gi|1333794|emb|CAA79719.1| (Z21508) glucose-1-phosphate thymid transferase [Neisseria gonorrhoeae]; COG1209 dTDP-glucose pyrophosphorylase
YP_208927.1	Best Blastp Hit: pir||B82015 probable integral membrane protein NMA0207 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378976|emb|CAB83521.1| (AL162752)  integral membrane protein [Neisseria meningitidis]; COG1297 Uncharacterized membrane protein
YP_208928.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_208929.1	COG1555 DNA uptake protein ComEA and related; DNA-binding competence protein 4
YP_208930.1	Best Blastp Hit: gb|AAF40525.1| (AE002364) DnaK suppressor protein [Neisseria meningitidis MC58]; COG1734 DnaK suppressor protein DskA; dosage-dependent DnaK suppressor protein
YP_208931.1	Best Blastp Hit: pir||H82015 probable pyrroline-5-carboxylate reductase (EC 1.5.1.2) NMA0215 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378982|emb|CAB83527.1| (AL162752) pyrroline-5-carboxylate reductase [Neisseria meningitidis]; COG0345 Pyrroline-5-carboxylate reductase
YP_208932.1	Best Blastp Hit: pir||A82016 probable lipoprotein NMA0216 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378983|emb|CAB83528.1| (AL162752) lipoprotein [Neisseria meningitidis]
YP_208933.1	Best Blastp Hit: pir||C81243 conserved hypothetical protein NMB0053 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225273|gb|AAF40522.1| (AE002364) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0325 Predicted enzyme with a TIM-barrel fold
YP_208934.1	Best Blastp Hit: gb|AAB30824.1| (S72391) PilT=ATP binding casette protein homolog [Neisseria gonorrhoeae, MS11, Peptide, 347 aa]; COG0630 Predicted ATPases involved in pili
YP_208935.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); COG0630 Predicted ATPases involved in pili
YP_208936.1	Best Blastp Hit: pir||H81242 conserved hypothetical protein NMB0050 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225270|gb|AAF40519.1| (AE002364) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1289 Uncharacterized membrane protein, YhfK
YP_208937.1	Best Blastp Hit: emb|CAA05407.1| (AJ002423) hypothetical protein [Neisseria gonorrhoeae]
YP_208938.1	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON)
YP_208939.1	catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate
YP_208940.1	catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A
YP_208941.1	Best Blastp Hit: pir||C81248 conserved hypothetical protein NMB0013 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225238|gb|AAF40492.1| (AE002359) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_208942.1	Best Blastp Hit: possibly phase variable - 8T residue homopolymer repeat in the coding sequence (ON); COG0861 Membrane protein TerC, possibly involved in
YP_208943.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_208944.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_208945.1	Best Blastp Hit: emb|CAB83564.1| (AL162752) hypothetical protein NMA0256 [Neisseria meningitidis]; COG0271 Stress-induced morphogen BolA (activity
YP_208946.1	Best Blastp Hit: sp|P95357|FTSX_NEIGO cell division protein FtsX homolog >gi|1684782|gb|AAB36525.1| (U76418) FtsX-like protein [Neisseria gonorrhoeae]; COG2177 Cell division protein FtsX
YP_208947.1	Best Blastp Hit: pir||E81247 cell division ATP-binding protein FtsE NMB0007 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225232|gb|AAF40486.1| (AE002359) cell division ATP-binding protein FtsE [Neisseria meningitidis MC58]; COG1135 Uncharacterized ABC-type transport system
YP_208948.1	Best Blastp Hit: gb|AAB36523.1| (U76418) thioredoxin-like protein [Neisseria gonorrhoeae]; COG0526 Thiol-disulfide isomerase and thioredoxins
YP_208949.1	Best Blastp Hit: pir||C81247 arsenate reductase NMB0005 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225230|gb|AAF40484.1| (AE002359) arsenate reductase [Neisseria meningitidis MC58] >gi|7379014|emb|CAB83560.1| (AL162752)  oxidoreductase [Neisseria meningitidis]; protein ArsC
YP_208950.1	Best Blastp Hit: emb|CAB83559.1| (AL162752) periplasmic protein [Neisseria meningitidis]; COG1434 Uncharacterized ACR
YP_208951.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_208952.1	Best Blastp Hit: pir||H81246 hypothetical protein NMB0002 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225227|gb|AAF40481.1| (AE002359) hypothetical protein [Neisseria meningitidis MC58]
YP_208953.1	Best Blastp Hit: pir||D82019 probable acetyltransferase NMA0248 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379010|emb|CAB83556.1| (AL162752)  acetyltransferase [Neisseria meningitidis]; COG0456 Acetyltransferases
YP_208954.1	Best Blastp Hit: gb|AAA96487.1| (L36381) [Neisseria gonorrhoeae]
YP_208955.1	This protein performs the mismatch recognition step during the DNA repair process
YP_208956.1	Best Blastp Hit: pir||B82019 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) C NMA0246 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379008|emb|CAB83554.1| (AL162752) glyceraldehyde 3-phosphate dehydrogenase C [Neisseria meningitidis]; COG0057 Glyceraldehyde-3-phosphate dehydrogenase
YP_208957.1	Best Blastp Hit: gb|AAF42466.1| (AE002563) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1720 Uncharacterized ACR, YaeB/UPF0066 family
YP_208958.1	Best Blastp Hit: gb|AAF42465.1| (AE002563) pyrazinamidase/nicotinamidase PncA,  [Neisseria meningitidis MC58]; COG1335 Amidases related to nicotinamidase
YP_208959.1	Best Blastp Hit: pir||S60783 lipopolysaccharide heptosyltransferase (EC 2.4.99.-) I rfaC [similarity] - Neisseria gonorrhoeae >gi|606855|gb|AAA93059.1| (U10385) lipooligosaccharide heptosyltransferase-1 [Neisseria gonorrhoeae]; COG0859 ADP-heptose:LPS heptosyltransferase; lipopolysaccharide heptosyltransferase I
YP_208960.1	Best Blastp Hit: pir||A81001 electron transfer flavoprotein, beta chain NMB2155 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227413|gb|AAF42463.1| (AE002563) electron transfer flavoprotein, beta subunit [Neisseria meningitidis MC58]; COG2086 Electron transfer flavoprotein beta-subunit; electron transfer flavoprotein beta-subunit
YP_208961.1	Best Blastp Hit: pir||H81000 electron transfer flavoprotein, alpha chain NMB2154 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227412|gb|AAF42462.1| (AE002563) electron transfer flavoprotein, alpha subunit [Neisseria meningitidis MC58]; COG2025 Electron transfer flavoprotein; electron transfer flavoprotein alpha-subunit
YP_208962.1	Best Blastp Hit: pir||F81000 hypothetical protein NMB2152 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227410|gb|AAF42460.1| (AE002563) hypothetical protein [Neisseria meningitidis MC58]
YP_208963.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_208964.1	Best Blastp Hit: emb|CAB83545.1| (AL162752) hypothetical protein NMA0237 [Neisseria meningitidis]; COG0009  translation factor (SUA5)
YP_208965.1	Best Blastp Hit: emb|CAB83544.1| (AL162752) NMA0236, unknonwn, len: 77 aa [Neisseria meningitidis]
YP_208966.1	Best Blastp Hit: pir||A81003 probable lipoprotein NMA0233 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227404|gb|AAF42455.1| (AE002562) hypothetical protein [Neisseria meningitidis MC58] >gi|7378997|emb|CAB83542.1| (AL162752)  lipoprotein [Neisseria meningitidis]
YP_208967.1	Best Blastp Hit: gb|AAF42453.1| (AE002562) hypothetical protein [Neisseria meningitidis MC58]
YP_208968.1	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_208969.1	Best Blastp Hit: pir||E82017 hypothetical protein NMA0229 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378995|emb|CAB83540.1| (AL162752) hypothetical protein NMA0229 [Neisseria meningitidis]
YP_208970.1	Best Blastp Hit: pir||D82017 hypothetical protein NMA0228 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378994|emb|CAB83539.1| (AL162752) hypothetical protein NMA0228 [Neisseria meningitidis]
YP_208971.1	Best Blastp Hit: pir||C81002 probable periplasmic protein NMA0227 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227398|gb|AAF42449.1| (AE002562) hypothetical protein [Neisseria meningitidis MC58] >gi|7378993|emb|CAB83538.1| (AL162752)  periplasmic protein [Neisseria meningitidis]
YP_208972.1	Best Blastp Hit: pir||B81002 conserved hypothetical protein NMB2140 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227397|gb|AAF42448.1| (AE002562) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_208973.1	Best Blastp Hit: pir||A82017 probable lipoprotein NMA0225 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378991|emb|CAB83536.1| (AL162752) possible lipoprotein [Neisseria meningitidis]; COG1752  phosphoesterases, homologs of
YP_208974.1	recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1
YP_208975.1	Best Blastp Hit: gb|AAF42445.1| (AE002562) hypothetical protein [Neisseria meningitidis MC58]
YP_208976.1	Best Blastp Hit: possibly phase variable - 8C residue homopolymer repeat in the coding sequence (ON)
YP_208977.1	Best Blastp Hit: gb|AAF42444.1| (AE002562) peptide transporter [Neisseria meningitidis MC58]; COG0477 Permeases
YP_208978.1	Best Blastp Hit: gb|AAF42443.1| (AE002561) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_208979.1	Best Blastp Hit: pir||G81003 conserved hypothetical protein NMB2134 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227390|gb|AAF42442.1| (AE002561) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0729 Predicted outer membrane protein
YP_208980.1	involved in the import of serine and threonine coupled with the import of sodium
YP_208981.1	Best Blastp Hit: gb|AAF44763.1|AF235146_1 (AF235146) GNA2132 [Neisseria gonorrhoeae] >gi|7274418|gb|AAF44764.1|AF235147_1 (AF235147) GNA2132 [Neisseria gonorrhoeae]
YP_208982.1	Best Blastp Hit: pir||B82029 probable malate dehydrogenase (acceptor) (EC 1.1.99.16) NMA0333 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379088|emb|CAB83637.1| (AL162752) probable malate:quinone oxidoreductase [Neisseria meningitidis]
YP_208984.1	catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis
YP_208985.1	Best Blastp Hit: gb|AAF42436.1| (AE002560) CinA-related protein [Neisseria meningitidis MC58]; COG1058 Uncharacterized ACR
YP_208986.1	Best Blastp Hit: emb|CAB83609.1| (AL162752) protease [Neisseria meningitidis]; COG0616 Periplasmic serine proteases
YP_208987.1	Best Blastp Hit: pir||A82026 hypothetical protein NMA0307 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379063|emb|CAB83612.1| (AL162752) hypothetical protein NMA0307 [Neisseria meningitidis]
YP_208988.1	Best Blastp Hit: pir||A81007 hypothetical protein NMB2106 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227367|gb|AAF42421.1| (AE002559) hypothetical protein [Neisseria meningitidis MC58]
YP_208989.1	Best Blastp Hit: possibly phase variable - 8T residue homopolymer repeat in the coding sequence (ON)
YP_208990.1	Best Blastp Hit: emb|CAB83344.1| (AL162752) hypothetical protein NMA0024 [Neisseria meningitidis]
YP_208991.1	Best Blastp Hit: gb|AAF40793.1| (AE002391) hypothetical protein [Neisseria meningitidis MC58]
YP_208992.1	Best Blastp Hit: possibly phase variable - two 8A residue homopolymer repeats in the coding sequence (ON); protein MafB5
YP_208993.1	Best Blastp Hit: gb|AAD31038.1|AF142582_2 (AF142582) adhesin MafA [Neisseria gonorrhoeae]; mafA adhesin
YP_208994.1	Catalyzes the phosphorylation of UMP to UDP
YP_208995.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_208996.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_208997.1	Best Blastp Hit: gb|AAF42417.1| (AE002559) hypothetical protein [Neisseria meningitidis MC58]
YP_208998.1	Best Blastp Hit: emb|CAB83635.1| (AL162752) hypothetical protein NMA0330 [Neisseria meningitidis]; COG0212 5-formyltetrahydrofolate cyclo-ligase
YP_208999.1	Best Blastp Hit: emb|CAB83636.1| (AL162752) hypothetical protein NMA0331 [Neisseria meningitidis]; COG1670 Acetyltransferases, including N-acetylases
YP_209000.1	malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate
YP_209001.1	Best Blastp Hit: emb|CAB83638.1| (AL162752) adhesin component [Neisseria meningitidis]
YP_209002.1	Best Blastp Hit: gb|AAF42411.1| (AE002558) hypothetical protein [Neisseria meningitidis MC58] >gi|7379090|emb|CAB83639.1| (AL162752) hypothetical protein NMA0336 [Neisseria meningitidis]
YP_209003.1	Best Blastp Hit: pir||C81008 methionine aminopeptidase NMB2093 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227355|gb|AAF42410.1| (AE002558) methionine aminopeptidase [Neisseria meningitidis MC58]; COG0024 Methionine aminopeptidase
YP_209004.1	Best Blastp Hit: gb|AAF42409.1| (AE002558) hypothetical protein [Neisseria meningitidis MC58]
YP_209005.1	Best Blastp Hit: pir||G82029 probable lipoprotein NMA0339 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379093|emb|CAB83642.1| (AL162752) lipoprotein [Neisseria meningitidis]
YP_209006.1	catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate
YP_209007.1	Best Blastp Hit: pir||A82030 hypothetical protein NMA0341 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379095|emb|CAB83644.1| (AL162752) hypothetical protein NMA0341 [Neisseria meningitidis]; COG0792 Predicted endonuclease distantly related to
YP_209008.1	Best Blastp Hit: pir||B82030 hypothetical protein NMA0342 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379096|emb|CAB83645.1| (AL162752) hypothetical protein NMA0342 [Neisseria meningitidis]; COG0313 Predicted methyltransferases
YP_209009.1	Best Blastp Hit: pir||E81007 hypothetical protein NMB2087 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227349|gb|AAF42404.1| (AE002558) hypothetical protein [Neisseria meningitidis MC58]
YP_209010.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_209011.1	Best Blastp Hit: gb|AAB03206.2| (U42459) cytosine DNA methylase M.NgoI [Neisseria gonorrhoeae]; COG0270 Site-specific DNA methylase dcm
YP_209012.1	Best Blastp Hit: gb|AAB03207.2| (U42459) NgoI restriction endonuclease R.NgoI [Neisseria gonorrhoeae]
YP_209013.1	Best Blastp Hit: emb|CAB83651.1| (AL162752) cysteinyl-tRNA synthetase [Neisseria meningitidis]; COG0215 Cysteinyl-tRNA synthetase
YP_209014.1	Best Blastp Hit: pir||H81009 exodeoxyribonuclease NMB2082 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227344|gb|AAF42400.1| (AE002557) exodeoxyribonuclease [Neisseria meningitidis MC58] >gi|7379103|emb|CAB83652.1| (AL162752)  nuclease [Neisseria meningitidis]; COG0708 Exonuclease III
YP_209015.1	Best Blastp Hit: pir||G81009 hypothetical protein NMB2081 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227343|gb|AAF42399.1| (AE002557) hypothetical protein [Neisseria meningitidis MC58]
YP_209016.1	Best Blastp Hit: pir||C82031 hypothetical protein NMA0350 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379105|emb|CAB83654.1| (AL162752) hypothetical protein NMA0350 [Neisseria meningitidis]
YP_209017.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_209018.1	Best Blastp Hit: pir||D81009 conserved hypothetical protein NMB2078 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227340|gb|AAF42396.1| (AE002557) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_209019.1	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate
YP_209020.1	Best Blastp Hit: pir||G82031 probable transferase NMA0356 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379109|emb|CAB83658.1| (AL162752) transferase [Neisseria meningitidis]; COG0615 Predicted cytidylyltransferases
YP_209021.1	activates biotin to form biotinyl-5'-adenylate and transfers the biotin moiety to biotin-accepting proteins and catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP
YP_209022.1	Best Blastp Hit: pir||A82032 probable periplasmic protein NMA0358 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379111|emb|CAB83660.1| (AL162752) periplasmic protein [Neisseria meningitidis]
YP_209023.1	Best Blastp Hit: gb|AAF42392.1| (AE002557) hypothetical protein [Neisseria meningitidis MC58]
YP_209025.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_209026.1	Best Blastp Hit: emb|CAB83663.1| (AL162752) hypothetical protein NMA0362 [Neisseria meningitidis]
YP_209027.1	Best Blastp Hit: gb|AAF42388.1| (AE002556) thiamin-phosphate pyrophosphorylase [Neisseria meningitidis MC58]; COG0352 Thiamine monophosphate synthase
YP_209028.1	Best Blastp Hit: gb|AAF42387.1| (AE002556) D-amino acid oxidase flavoprotein,  [Neisseria meningitidis MC58]; COG0665 Predicted oxidoreductases
YP_209029.1	Best Blastp Hit: gb|AAF42386.1| (AE002556) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1457 Purine-cytosine permease and related
YP_209030.1	Best Blastp Hit: pir||A82033 TLDD protein homolog NMA0367 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379119|emb|CAB83668.1| (AL162752) TLDD protein homolog [Neisseria meningitidis]; COG0312 Predicted Zn-dependent proteases and their
YP_209031.1	Best Blastp Hit: pir||F81391 amino-acid ABC transporter integral membrane protein Cj0467 [imported] - Campylobacter jejuni (strain NCTC 11168) >gi|6967938|emb|CAB75105.1| (AL139075) amino-acid ABC transporter integral membrane protein [Campylobacter jejuni]; COG0765 Amino acid ABC transporter permease
YP_209032.1	Best Blastp Hit: pir||B64666 glutamine ABC transporter permease - Helicobacter pylori (strain 26695) >gi|2314329|gb|AAD08216.1| (AE000623) glutamine ABC transporter permease (glnP) [Helicobacter pylori 26695]; COG0765 Amino acid ABC transporter permease
YP_209033.1	Best Blastp Hit: pir||H81391 amino-acid ABC transporter ATP-binding protein Cj0469 [imported] - Campylobacter jejuni (strain NCTC 11168) >gi|6967940|emb|CAB75107.1| (AL139075) amino-acid ABC transporter ATP-binding protein [Campylobacter jejuni]; COG1126 ABC-type polar amino acid transport system
YP_209034.1	Best Blastp Hit: gb|AAD26123.1| (AF109148) antigenic protein [Actinobacillus pleuropneumoniae]; COG0834 Periplasmic amino acid binding proteins
YP_209035.1	Best Blastp Hit: gb|AAF42384.1| (AE002556) hemK protein [Neisseria meningitidis MC58]; COG0500 SAM-dependent methyltransferases
YP_209036.1	Best Blastp Hit: pir||D81010 conserved hypothetical protein NMB2064 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227326|gb|AAF42383.1| (AE002556) conserved hypothetical protein [Neisseria meningitidis MC58]; COG2056 Predicted permease
YP_209037.1	Best Blastp Hit: gb|AAF42382.1| (AE002556) slyX protein,  [Neisseria meningitidis MC58]
YP_209039.1	Best Blastp Hit: pir||B81010 thiF protein NMB2062 [imported] - Neisseria meningitidis  (group B strain MD58) >gi|7227324|gb|AAF42381.1| (AE002556) thiF protein [Neisseria meningitidis MC58]; COG0476 Dinucleotide-utilizing enzymes involved in
YP_209040.2	catalyzes the formation of oxaloacetate from phosphoenolpyruvate
YP_209041.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_209042.1	Best Blastp Hit: pir||F81953 hypothetical protein NMA0376 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379129|emb|CAB83677.1| (AL162753) hypothetical protein NMA0376 [Neisseria meningitidis]
YP_209043.1	Best Blastp Hit: gb|AAF42378.1| (AE002555) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379130|emb|CAB83678.1| (AL162753) hypothetical protein NMA0377 [Neisseria meningitidis]
YP_209044.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_209045.1	forms a direct contact with the tRNA during translation
YP_209047.1	Best Blastp Hit: pir||H81011 transcription regulator, LysR family NMB2055 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227317|gb|AAF42375.1| (AE002555) transcriptional regulator, LysR family [Neisseria meningitidis MC58]; COG0583 Transcriptional regulators, LysR family; protein MetR
YP_209048.1	Best Blastp Hit: pir||D81954 hypothetical protein NMA0382 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379135|emb|CAB83683.1| (AL162753) hypothetical protein NMA0382 [Neisseria meningitidis]; COG0327 Uncharacterized ACR, YbgI/Acr family
YP_209049.1	Best Blastp Hit: gb|AAF42373.1| (AE002555) ubiquinol--cytochrome c reductase, iron-sulfur subunit [Neisseria meningitidis MC58] >gi|7379136|emb|CAB83684.1| (AL162753) ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria meningitidis]; COG0723 Rieske Fe-S protein; ubiquinol--cytochrome c reductase iron-sulfur subunit
YP_209050.1	Best Blastp Hit: pir||F81954 ubiquinol--cytochrome-c reductase (EC 1.10.2.2) cytochrome b NMA0384 [similarity] - Neisseria meningitidis (group A strain Z2491) >gi|7379137|emb|CAB83685.1| (AL162753) cytochrome B [Neisseria meningitidis]; COG1290 Cytochrome b (b6-like); protein PetB
YP_209051.1	Best Blastp Hit: emb|CAB83686.1| (AL162753) cytochrome C1 precursor [Neisseria meningitidis]; protein PetC
YP_209052.1	Best Blastp Hit: gb|AAF42370.1| (AE002555) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1322 Uncharacterized BCR, YigN family
YP_209053.1	Best Blastp Hit: pir||A81955 probable hydrolase NMA0387 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379140|emb|CAB83688.1| (AL162753) hydrolase [Neisseria meningitidis]; COG0491 Zn-dependent hydrolases
YP_209054.1	catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA
YP_209055.1	Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively
YP_209056.1	Best Blastp Hit: emb|CAB83691.1| (AL162753) sugar transport PTS system IIA component [Neisseria meningitidis]
YP_209057.1	Best Blastp Hit: pir||A81013 sugar transport PTS system phosphocarrier protein HPR NMA0391 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227306|gb|AAF42365.1| (AE002554) phosphocarrier protein HPr [Neisseria meningitidis MC58] >gi|7379144|emb|CAB83692.1| (AL162753) sugar transport PTS system phosphocarrier protein HPR [Neisseria meningitidis]; COG1925 Phosphotransferase system, HPr-related; sugar transport PTS system phosphocarrier protein HPr
YP_209058.1	Best Blastp Hit: pir||H81012 phosphoenolpyruvate-protein phosphotransferase NMB2044 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227305|gb|AAF42364.1| (AE002554) phosphoenolpyruvate-protein phosphotransferase [Neisseria meningitidis MC58]; COG1080 Phosphoenolpyruvate-protein kinase (PTS; protein PtsI
YP_209059.1	Best Blastp Hit: emb|CAB83694.1| (AL162753) ABC-transport system ATP-binding protein [Neisseria meningitidis]; COG1128 ABC-type spermidine/putrescine transport
YP_209060.1	Best Blastp Hit: pir||F81012 thiamin pyrophosphokinase-related protein NMB2041 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227303|gb|AAF42362.1| (AE002554) thiamin pyrophosphokinase-related protein [Neisseria meningitidis MC58]
YP_209061.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_209063.1	Best Blastp Hit: pir||F82022 probable glycerate dehydrogenase (EC 1.1.1.29) NMA0274 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379036|emb|CAB83582.1| (AL162752)  glycerate dehydrogenase [Neisseria meningitidis]; COG1052 Lactate dehydrogenase and related
YP_209064.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_209065.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
YP_209067.1	Best Blastp Hit: possibly phase variable - 9A residue homopolymer repeat in the coding sequence (ON)
YP_209068.1	Best Blastp Hit: gb|AAF44779.1|AF235145_1 (AF235145) GNA33 [Neisseria gonorrhoeae]
YP_209069.1	Best Blastp Hit: pir||E81244 conserved hypothetical protein NMB0035 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225255|gb|AAF40506.1| (AE002362) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_209070.1	Best Blastp Hit: pir||F81244 conserved hypothetical protein NMB0036 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225256|gb|AAF40507.1| (AE002362) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_209071.1	Best Blastp Hit: pir||G81244 phnA protein NMB0037 [imported] - Neisseria meningitidis  (group B strain MD58) >gi|7225257|gb|AAF40508.1| (AE002362) phnA protein [Neisseria meningitidis MC58]; alkylphosphonate uptake protein
YP_209072.1	Best Blastp Hit: sp|Q50986|GLMU_NEIGO UDP-N-acetylglucosamine pyrophosphorylase (N-acetylglucosamine-1-phosphate uridyltransferase) >gi|975206|emb|CAA90326.1| (Z50023) uridyltransferase [Neisseria gonorrhoeae]; COG1207
YP_209073.1	Best Blastp Hit: gb|AAF40510.1| (AE002362) hypothetical protein [Neisseria meningitidis MC58]
YP_209074.1	Best Blastp Hit: emb|CAB83593.1| (AL162752) possible hydrolase [Neisseria meningitidis]; COG1011 Predicted hydrolases of the HAD superfamily
YP_209075.1	Best Blastp Hit: emb|CAB83594.1| (AL162752) thiamin-binding periplasmic protein [Neisseria meningitidis]; COG1840 Thiamine-binding periplasmic proteins
YP_209076.1	Best Blastp Hit: pir||D81245 conserved hypothetical protein NMB0042 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225262|gb|AAF40513.1| (AE002362) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0668 Uncharacterized ACR, integral membrane
YP_209077.1	Best Blastp Hit: pir||E81245 conserved hypothetical protein NMB0043 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225263|gb|AAF40514.1| (AE002362) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379050|emb|CAB83596.1| (AL162752) hypothetical protein NMA0289 [Neisseria meningitidis]; COG1546 Uncharacterized protein CinA/YgaD
YP_209078.1	this is a fusion of 3 domains, an N-termianl thioredoxin domain, and 2 domains at the C-terminus that are methionine sulfoxide reductases, MsrA and MsrB; methionine is modified to form methionine sulfoxide during normal cellular processes and due to oxidat
YP_209079.1	Best Blastp Hit: sp|P14929|PILA_NEIGO probably signal recognition particle protein (DOCKING protein); COG0552 Signal recognition particle GTPase FtsY
YP_209080.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_209081.1	Best Blastp Hit: gb|AAF42356.1| (AE002553) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1451 Predicted metal-dependent hydrolase
YP_209082.1	Best Blastp Hit: pir||G81013 1-acyl-sn-glycerol-3-phosphate acyltransferase, probable NMB2034 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227295|gb|AAF42355.1| (AE002553) 1-acyl-sn-glycerol-3-phosphate acyltransferase, [Neisseria meningitidis MC58]; COG0204 1-acyl-sn-glycerol-3-phosphate; NlaB
YP_209083.1	Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate
YP_209084.1	Best Blastp Hit: pir||C81957 probable integral membrane protein NMA0408 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379158|emb|CAB83707.1| (AL162753)  integral membrane protein [Neisseria meningitidis]; COG1368 Phosphoglycerol transferase MdoB and related
YP_209085.1	Best Blastp Hit: possibly phase variable - 11C residue homopolymer repeat in the coding sequence (ON); COG0438 Glycosyltransferases I
YP_209086.1	Best Blastp Hit: pir||E81013 tryptophan transporter NMB2031 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227293|gb|AAF42353.1| (AE002553) tryptophan transporter [Neisseria meningitidis MC58]; COG0814 Amino acid permeases; tryptophan transport protein, tryptophan permease
YP_209087.1	Involved in ubiquinone biosynthesis
YP_209088.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine
YP_209089.1	Best Blastp Hit: pir||G81015 probable gluconokinase (EC 2.7.1.12) NMA0412 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227290|gb|AAF42351.1| (AE002552) thermoresistant gluconokinase [Neisseria meningitidis MC58] >gi|7379162|emb|CAB83711.1| (AL162753)  glucokinase [Neisseria meningitidis]; COG0529 Adenylylsulfate kinase and related kinases
YP_209090.1	Best Blastp Hit: pir||H81957 probable gluconate permease NMA0413 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379163|emb|CAB83712.1| (AL162753)  gluconate permease [Neisseria meningitidis]
YP_209091.1	Best Blastp Hit: gb|AAF42349.1| (AE002552) ABC transporter permease [Neisseria meningitidis MC58]; COG1178 Uncharacterized transport system, permease
YP_209092.1	Best Blastp Hit: pir||D81015 conserved hypothetical protein NMB2025 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227287|gb|AAF42348.1| (AE002552) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379165|emb|CAB83714.1| (AL162753) hypothetical protein NMA0415 [Neisseria meningitidis]; COG0288 Carbonic anhydrase
YP_209093.1	Best Blastp Hit: sp|P57090|NADD_NEIMB probable nicotinate-nucleotide adenyltransferase (deamido-NAD(+) pyrophosphorylase)(deamido-NAD(+) diphosphorylase) (nicotinate mononucleotide adenylyltransferase) (NAMN adenylyltransferase) >gi|11278845|pir||C81015 conserved hypothetical protein NMB2024 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227286|gb|AAF42347.1| (AE002552) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1057 Predicted nucleotidyltransferases
YP_209094.1	Best Blastp Hit: gb|AAF42346.1| (AE002552) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379167|emb|CAB83716.1| (AL162753) hypothetical protein NMA0417 [Neisseria meningitidis]; COG0799 Uncharacterized ACR (homolog of plant
YP_209095.1	SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_209096.1	Best Blastp Hit: gb|AAF42344.1| (AE002552) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379169|emb|CAB83718.1| (AL162753) hypothetical protein NMA0419 [Neisseria meningitidis]
YP_209097.1	Best Blastp Hit: pir||G81014 conserved hypothetical protein NMB2020 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227282|gb|AAF42343.1| (AE002552) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379170|emb|CAB83719.1| (AL162753)  integral membrane protein [Neisseria meningitidis]; COG0670 Integral membrane protein YccA, interacts
YP_209098.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_209099.1	Best Blastp Hit: emb|CAC14203.1| (AJ277636) MapB protein [Pasteurella multocida]
YP_209100.1	Best Blastp Hit: pir||G81087 IS1016C2 transposase NMB1411 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226649|gb|AAF41773.1| (AE002489) IS1016C2 transposase [Neisseria meningitidis MC58]
YP_209101.1	Best Blastp Hit: pir||A81962 probable ABC transporter ATP-binding subunit NMA0448 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379196|emb|CAB83745.1| (AL162753)  ABC transporter ATP-binding subunit [Neisseria meningitidis]; COG1120 ABC-type iron (III) transport system, ATPase
YP_209102.1	Best Blastp Hit: pir||G81018 hypothetical protein NMB1992 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227254|gb|AAF42319.1| (AE002548) hypothetical protein [Neisseria meningitidis MC58]
YP_209103.1	Best Blastp Hit: gb|AAF42318.1| (AE002548) iron(III) ABC transporter permease [Neisseria meningitidis MC58]; COG0609 Iron, hemin, cobalamine permeases
YP_209104.1	Best Blastp Hit: pir||E81018 iron(III) ABC transporter permease NMB1990 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227252|gb|AAF42317.1| (AE002548) iron(III) ABC transporter permease [Neisseria meningitidis MC58]; COG0609 Iron, hemin, cobalamine permeases
YP_209105.1	Best Blastp Hit: gb|AAD29611.1|AF115385_1 (AF115385)  ferric enterobactin periplasmic binding protein [Neisseria gonorrhoeae]; COG0614 Ferrichrome-binding periplasmic proteins
YP_209106.1	Best Blastp Hit: possibly phase variable - 8T residue homopolymer repeat in the coding sequence (ON); COG1629 Outer membrane receptor proteins, mostly Fe; ferric enterobactin receptor
YP_209107.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_209108.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_209109.1	Best Blastp Hit: pir||E81964 probable sodium-dependent inner membrane transport protein NMA0470 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379216|emb|CAB83765.1| (AL162753)  sodium-dependent inner membrane transport protein [Neisseria meningitidis]; COG0733 Sodium-dependent transporters (SNF family)
YP_209111.1	Best Blastp Hit: pir||D81964 diaminopimelate decarboxylase (EC 4.1.1.20) NMA0468 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379215|emb|CAB83764.1| (AL162753) diaminopimelate decarboxylase [Neisseria meningitidis]; COG0019 Diaminopimelate decarboxylase
YP_209112.1	Best Blastp Hit: emb|CAB83763.1| (AL162753) lipoprotein [Neisseria meningitidis]
YP_209113.1	defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly
YP_209114.1	Best Blastp Hit: gb|AAF42308.1| (AE002546) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_209115.1	catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2
YP_209116.1	Best Blastp Hit: pir||F81963 DNA-directed DNA polymerase (EC 2.7.7.7) I NMA0462 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379209|emb|CAB83758.1| (AL162753) DNA polymerase I [Neisseria meningitidis]; COG0749 DNA polymerase I - 3'-5' exonuclease and
YP_209117.1	Best Blastp Hit: pir||C81019 hypothetical protein NMB1983 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227245|gb|AAF42311.1| (AE002547) hypothetical protein [Neisseria meningitidis MC58] >gi|7379207|emb|CAB83756.1| (AL162753) hypothetical protein [Neisseria meningitidis]
YP_209118.1	Best Blastp Hit: pir||D81019 adhesion and penetration protein NMB1985 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227246|gb|AAF42312.1| (AE002547) adhesion and penetration protein [Neisseria meningitidis MC58]
YP_209120.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_209122.1	Best Blastp Hit: emb|CAB83769.1| (AL162753) haemoglobin-haptoglobin-utilization protein [Neisseria meningitidis]; COG1629 Outer membrane receptor proteins, mostly Fe
YP_209123.1	Best Blastp Hit: pir||B81021 conserved hypothetical protein NMB1971 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227232|gb|AAF42300.1| (AE002545) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_209124.1	Best Blastp Hit: emb|CAB83772.1| (AL162753) para-aminobenzoate synthase component I [Neisseria meningitidis]; COG0147 Anthranilate/para-aminobenzoate synthases
YP_209125.1	Best Blastp Hit: gb|AAG03531.1|AE004452_3 (AE004452) conserved hypothetical protein [Pseudomonas aeruginosa]
YP_209126.1	Best Blastp Hit: emb|CAB83778.1| (AL162753)  ABC transport ATP-binding protein [Neisseria meningitidis]; COG1127 Uncharacterized ABC-type transport system
YP_209127.1	Best Blastp Hit: pir||F81022 probable ABC transport inner membrane subunit NMA0486 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227225|gb|AAF42294.1| (AE002544) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379230|emb|CAB83779.1| (AL162753)  ABC transport inner membrane subunit [Neisseria meningitidis]; COG0767 Uncharacterized BCR (predicted membrane
YP_209128.1	Best Blastp Hit: pir||E81022 probable outer membrane transport protein NMA0487 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227224|gb|AAF42293.1| (AE002544) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379231|emb|CAB83780.1| (AL162753)  outer membrane transport protein [Neisseria meningitidis]; COG1463 Predicted membrane protein
YP_209129.1	Best Blastp Hit: gb|AAF42292.1| (AE002544) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_209130.1	Best Blastp Hit: pir||C81022 hypothetical protein NMB1962 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227222|gb|AAF42291.1| (AE002544) hypothetical protein [Neisseria meningitidis MC58]
YP_209131.1	Best Blastp Hit: gb|AAF42290.1| (AE002544) VacJ-related protein [Neisseria meningitidis MC58]
YP_209132.1	Best Blastp Hit: pir||A81022 hypothetical protein NMB1960 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227220|gb|AAF42289.1| (AE002544) hypothetical protein [Neisseria meningitidis MC58] >gi|7379235|emb|CAB83784.1| (AL162753) hypothetical protein [Neisseria meningitidis]
YP_209133.1	Best Blastp Hit: gb|AAF42288.1| (AE002544) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379236|emb|CAB83785.1| (AL162753) conserved hypothetical protein [Neisseria meningitidis]; COG0824 Predicted esterase
YP_209134.1	Best Blastp Hit: emb|CAB83786.1| (AL162753) periplasmic protein [Neisseria meningitidis]; COG0526 Thiol-disulfide isomerase and thioredoxins
YP_209135.1	Best Blastp Hit: emb|CAB83787.1| (AL162753) acetyltransferase [Neisseria meningitidis]; COG2171 Tetrahydrodipicolinate
YP_209136.1	RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_209137.1	Best Blastp Hit: possibly phase variable - 9A residue homopolymer repeat in the coding sequence (ON); protein CadD
YP_209138.1	Best Blastp Hit: pir||F81967 probable inner membrane protein NMA0497 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379241|emb|CAB83790.1| (AL162753)  inner membrane protein [Neisseria meningitidis]
YP_209139.1	Best Blastp Hit: emb|CAA68006.1| (X99693) regF [Neisseria gonorrhoeae]; COG0625 Glutathione-S-transferases; regulator of pilE expression
YP_209140.1	Best Blastp Hit: gb|AAF42281.1| (AE002543) stringent starvation protein B [Neisseria meningitidis MC58]
YP_209142.1	Best Blastp Hit: gb|AAF42280.1| (AE002543) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1610 Uncharacterized protein, YqeY family
YP_209143.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_209144.1	Best Blastp Hit: emb|CAB83796.1| (AL162753) transglycosylase [Neisseria meningitidis]; COG0741 Soluble lytic murein transglycosylase and
YP_209146.1	Best Blastp Hit: emb|CAB83797.1| (AL162753)  ABC transport ATP-binding subunit [Neisseria meningitidis]; COG1135 Uncharacterized ABC-type transport system
YP_209147.1	Best Blastp Hit: pir||D81023 ABC transporter permease NMB1947 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227206|gb|AAF42276.1| (AE002543) ABC transporter permease [Neisseria meningitidis MC58]; COG2011 Permease component of an uncharacterized ABC
YP_209148.1	Best Blastp Hit: gb|AAF44768.1|AF235151_1 (AF235151) GNA1946 [Neisseria gonorrhoeae] >gi|7274428|gb|AAF44769.1|AF235152_1 (AF235152) GNA1946 [Neisseria gonorrhoeae] >gi|7274430|gb|AAF44770.1|AF235153_1 (AF235153) GNA1946 [Neisseria gonorrhoeae]; COG1464 Lipoprotein, attached to the cytoplasmic
YP_209149.1	catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate
YP_209150.1	Best Blastp Hit: pir||A81969 probable chromosome segregation proteins NMA0508 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379252|emb|CAB83801.1| (AL162753)  chromosome segregation proteins [Neisseria meningitidis]; COG1475 Predicted transcriptional regulators
YP_209151.1	Best Blastp Hit: sp|P44726|YICC_HAEIN hypothetical protein HI0467 >gi|1074414|pir||C64153 hypothetical protein HI0467 - Haemophilus influenzae (strain Rd KW20) >gi|1573445|gb|AAC22126.1| (U32729) conserved hypothetical protein [Haemophilus influenzae Rd]
YP_209152.1	Best Blastp Hit: pir||F81025 hypothetical protein NMB1941 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227199|gb|AAF42270.1| (AE002542) hypothetical protein [Neisseria meningitidis MC58]; AtpI protein
YP_209153.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_209154.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_209155.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.
YP_209156.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_209157.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_209158.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_209159.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_209160.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_209161.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_209162.1	glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_209163.1	Best Blastp Hit: sp|Q50947|LGTB_NEIGO lacto-N-neotetraose biosynthesis glycosyl transferase LgtB >gi|595811|gb|AAA68010.1| (U14554) glycosyl transferase [Neisseria gonorrhoeae]; protein LgtB
YP_209164.1	Best Blastp Hit: gb|AAA68012.1| (U14554) glycosyl transferase [Neisseria gonorrhoeae]; COG0463 Glycosyltransferases involved in cell wall; glycosyl transferase family protein
YP_209165.1	Best Blastp Hit: sp|Q50950|LGTE_NEIGO lacto-N-neotetraose biosynthesis glycosyl transferase LgtE >gi|595814|gb|AAA68013.1| (U14554) glycosyl transferase [Neisseria gonorrhoeae]
YP_209166.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_209167.1	Best Blastp Hit: emb|CAB83821.1| (AL162753) hypothetical protein NMA0529 [Neisseria meningitidis]; COG0483 Inositol phosphatases
YP_209168.1	Best Blastp Hit: gb|AAF42252.1| (AE002541) conserved hypothetical protein [Neisseria meningitidis MC58]
YP_209169.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_209170.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_209171.1	Best Blastp Hit: gb|AAF42249.1| (AE002541) ABC transporter ATP-binding protein [Neisseria meningitidis MC58]; COG1132 ABC-type multidrug/protein/lipid transport
YP_209172.1	Best Blastp Hit: pir||B81026 malonyl CoA-acyl carrier protein transacylase NMB1918 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227176|gb|AAF42248.1| (AE002541) malonyl CoA-acyl carrier protein transacylase [Neisseria meningitidis MC58]; COG0331 (acyl-carrier-protein) S-malonyltransferase
YP_209173.1	Best Blastp Hit: emb|CAB83831.1| (AL162753) integral membrane protein [Neisseria meningitidis]
YP_209174.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_209175.1	Best Blastp Hit: gb|AAF42244.1| (AE002540) hypothetical protein [Neisseria meningitidis MC58] >gi|7379280|emb|CAB83834.1| (AL162753) hypothetical protein NMA0541 [Neisseria meningitidis]
YP_209176.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_209177.1	Best Blastp Hit: pir||G81028 conserved hypothetical protein NMB1912 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227169|gb|AAF42242.1| (AE002540) conserved hypothetical protein [Neisseria meningitidis MC58]; COG2236 Predicted phosphoribosyltransferases
YP_209178.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_209179.1	Best Blastp Hit: pir||A81973 hypothetical protein NMA0545 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379284|emb|CAB83838.1| (AL162753) hypothetical protein NMA0545 [Neisseria meningitidis]
YP_209180.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_209181.1	Best Blastp Hit: sp|P45610|TONB_KLEPN TonB protein >gi|484474|pir||JN0788 tonB protein - Klebsiella pneumoniae >gi|405758|emb|CAA48498.1| (X68478) TonB [Klebsiella pneumoniae]
YP_209182.1	Best Blastp Hit: gb|AAF42238.1| (AE002540) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0313 Predicted methyltransferases
YP_209183.1	functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria
YP_209185.1	Best Blastp Hit: pir||E81973 hypothetical protein NMA0549 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379288|emb|CAB83842.1| (AL162753) hypothetical protein NMA0549 [Neisseria meningitidis]; COG0759 Uncharacterized ACR, YidD family
YP_209186.1	protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates
YP_209187.1	in Escherichia coli transcription of this gene is enhanced by polyamines