-- dump date 20140619_162947 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 242231000001 SEQ_END SEQ_END NC_002946.2 2153922 2153922 DR NC_002946.2; contig end 2153922..2153922 Neisseria gonorrhoeae FA 1090 YP_207186.1 CDS dnaA NC_002946.2 159 1715 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 159..1715 Neisseria gonorrhoeae FA 1090 3283049 YP_207187.1 CDS NGO0002 NC_002946.2 1795 2898 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 1795..2898 Neisseria gonorrhoeae FA 1090 3283050 YP_207188.1 CDS NGO0003 NC_002946.2 3047 5104 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(3047..5104) Neisseria gonorrhoeae FA 1090 3283051 YP_207189.1 CDS NGO0004 NC_002946.2 5273 5716 R Best Blastp Hit: pir||D81974 probable periplasmic protein NMA0556 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379295|emb|CAB83849.1| (AL162753) periplasmic protein [Neisseria meningitidis]; hypothetical protein complement(5273..5716) Neisseria gonorrhoeae FA 1090 3283052 YP_207190.1 CDS leuS NC_002946.2 6500 9136 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 6500..9136 Neisseria gonorrhoeae FA 1090 3283053 YP_207191.1 CDS NGO0007 NC_002946.2 9365 10294 D Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); COG0338 Site-specific DNA methylase dam; type II restriction endonuclease 9365..10294 Neisseria gonorrhoeae FA 1090 3283054 YP_207192.1 CDS NGO0008 NC_002946.2 10394 11071 D Best Blastp Hit: sp|P09358|MT22_STRPN modification methylase DpnII 2 (adenine-specific methyltransferase DpnII 2) (M.DPNII 2) >gi|6978344|gb|AAA88581.2| (M14339) DNA adenine methyltransferase [Streptococcus pneumoniae]; COG0863 Adenine-specific DNA methylase; modification methylase 10394..11071 Neisseria gonorrhoeae FA 1090 3283055 YP_207193.1 CDS NGO0009 NC_002946.2 11091 11546 D Best Blastp Hit: sp|P54298|LUXM_VIBHA LUXM protein >gi|487037|pir||S37349 luxM protein - Vibrio harveyi >gi|295433|gb|AAC36807.1| (L13940) Lux M [Vibrio harveyi]; hypothetical protein 11091..11546 Neisseria gonorrhoeae FA 1090 3283056 YP_207194.1 CDS NGO0010 NC_002946.2 12107 12307 R Best Blastp Hit: gb|AAF42226.1| (AE002539) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(12107..12307) Neisseria gonorrhoeae FA 1090 3283057 YP_207195.1 CDS NGO0011 NC_002946.2 12417 12728 R Best Blastp Hit: pir||B81975 probable DNA-binding protein NMA0564 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379301|emb|CAB83856.1| (AL162753) DNA-binding protein [Neisseria meningitidis]; hypothetical protein complement(12417..12728) Neisseria gonorrhoeae FA 1090 3283058 YP_207196.1 CDS NGO0015 NC_002946.2 13341 13625 D Best Blastp Hit: emb|CAB83858.1| (AL162753) hypothetical protein NMA0567 [Neisseria meningitidis]; hypothetical protein 13341..13625 Neisseria gonorrhoeae FA 1090 3283059 YP_207197.1 CDS secG NC_002946.2 14081 14431 R SecG; Best Blastp Hit: pir||F81031 protein-export membrane protein SecG NMB1888 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227147|gb|AAF42222.1| (AE002538) protein-export membrane protein SecG [Neisseria meningitidis MC58] >gi|7379305|emb|CAB83860.1| (AL162753) protein-export integral membrane protein [Neisseria meningitidis]; preprotein translocase subunit SecG complement(14081..14431) Neisseria gonorrhoeae FA 1090 3283060 YP_207198.1 CDS tpiA NC_002946.2 14438 15211 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(14438..15211) Neisseria gonorrhoeae FA 1090 3283061 YP_207199.1 CDS NGO0018 NC_002946.2 15370 15897 D Best Blastp Hit: pir||H81975 hypothetical protein NMA0571 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379307|emb|CAB83862.1| (AL162753) hypothetical protein NMA0571 [Neisseria meningitidis]; COG1956 GAF domain-containing proteins; hypothetical protein 15370..15897 Neisseria gonorrhoeae FA 1090 3283062 YP_207200.1 CDS NGO0019 NC_002946.2 16000 16656 D PimT; Best Blastp Hit: gb|AAF42219.1| (AE002538) protein-L-isoaspartate O-methyltransferase [Neisseria meningitidis MC58]; protein-L-isoaspartate O-methyltransferase 16000..16656 Neisseria gonorrhoeae FA 1090 3283075 YP_207201.1 CDS NGO0020 NC_002946.2 16737 17060 D Best Blastp Hit: emb|CAB83864.1| (AL162753) hypothetical protein NMA0573 [Neisseria meningitidis]; hypothetical protein 16737..17060 Neisseria gonorrhoeae FA 1090 3283063 YP_207202.1 CDS NGO0021 NC_002946.2 17323 19500 R Best Blastp Hit: pir||D81976 probable ferric siderophore receptor protein NMA0575 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379311|emb|CAB83866.1| (AL162753) ferric siderophore receptor protein [Neisseria meningitidis]; COG1629 Outer membrane receptor proteins, mostly Fe; TonB-dependent receptor protein complement(17323..19500) Neisseria gonorrhoeae FA 1090 3283064 YP_207203.1 CDS NGO0022 NC_002946.2 19763 20086 R Best Blastp Hit: pir||E81976 hypothetical protein NMA0576 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379312|emb|CAB83867.1| (AL162753) hypothetical protein NMA0576 [Neisseria meningitidis]; COG0662 Mannose-6-phosphate isomerase; hypothetical protein complement(19763..20086) Neisseria gonorrhoeae FA 1090 3283065 YP_207204.1 CDS NGO0023 NC_002946.2 20119 21090 R Best Blastp Hit: gb|AAF42214.1| (AE002538) ABC transporter periplasmic solute-binding protein, [Neisseria meningitidis MC58]; COG0614 Ferrichrome-binding periplasmic proteins; ABC transporter substrate-binding protein complement(20119..21090) Neisseria gonorrhoeae FA 1090 3283066 YP_207205.1 CDS NGO0024 NC_002946.2 21087 21251 R hypothetical protein complement(21087..21251) Neisseria gonorrhoeae FA 1090 3283067 YP_207206.1 CDS NGO0025 NC_002946.2 21326 22282 D Best Blastp Hit: emb|CAB83869.1| (AL162753) araC-family transcriptional regulator [Neisseria meningitidis]; COG2207 AraC-type DNA-binding domain-containing; AraC family transcriptional regulator 21326..22282 Neisseria gonorrhoeae FA 1090 3283069 YP_207207.1 CDS NGO0026 NC_002946.2 22395 24410 R Best Blastp Hit: emb|CAB83870.1| (AL162753) prolyl endopeptidase [Neisseria meningitidis]; COG1505 Serine proteases of the peptidase; prolyl endopeptidase complement(22395..24410) Neisseria gonorrhoeae FA 1090 3283068 YP_207208.1 CDS NGO0027 NC_002946.2 24506 25816 R catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase complement(24506..25816) Neisseria gonorrhoeae FA 1090 3283070 YP_207209.1 CDS NGO0028 NC_002946.2 25813 26241 R Best Blastp Hit: pir||A81033 hypothetical protein NMB1875 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227133|gb|AAF42209.1| (AE002537) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(25813..26241) Neisseria gonorrhoeae FA 1090 3282486 YP_207210.1 CDS pyrE NC_002946.2 26309 26950 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(26309..26950) Neisseria gonorrhoeae FA 1090 3282518 YP_207211.1 CDS NGO0030 NC_002946.2 27012 27749 R Best Blastp Hit: pir||G81032 DNA polymerase, bacteriophage-type, probable NMB1873 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227131|gb|AAF42207.1| (AE002537) DNA polymerase, bacteriophage-type, [Neisseria meningitidis MC58]; COG1573 Uracil-DNA glycosylase; hypothetical protein complement(27012..27749) Neisseria gonorrhoeae FA 1090 3282003 YP_207212.1 CDS NGO0031 NC_002946.2 27743 28183 R Best Blastp Hit: emb|CAB83875.1| (AL162753) acetyltransferase [Neisseria meningitidis]; COG0456 Acetyltransferases; acetyltransferase complement(27743..28183) Neisseria gonorrhoeae FA 1090 3281862 YP_207213.1 CDS NGO0032 NC_002946.2 28180 28857 R Best Blastp Hit: pir||F81977 hypothetical protein NMA0585 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379321|emb|CAB83876.1| (AL162753) hypothetical protein NMA0585 [Neisseria meningitidis]; COG1214 Inactive homologs of metal-dependent; hypothetical protein complement(28180..28857) Neisseria gonorrhoeae FA 1090 3281867 YP_207214.1 CDS NGO0033 NC_002946.2 28996 29853 R Best Blastp Hit: pir||D81032 hypothetical protein NMB1870 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227128|gb|AAF42204.1| (AE002537) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(28996..29853) Neisseria gonorrhoeae FA 1090 3281909 YP_207215.1 CDS NGO0034 NC_002946.2 29992 31056 R class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase complement(29992..31056) Neisseria gonorrhoeae FA 1090 3282170 YP_207216.1 CDS NGO0035 NC_002946.2 31250 32167 D XerC; Best Blastp Hit: pir||A81978 probable integrase/recombinase NMA0588 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379324|emb|CAB83879.1| (AL162753) integrase/recombinase [Neisseria meningitidis]; COG0582 Integrase; site-specific recombinase 31250..32167 Neisseria gonorrhoeae FA 1090 3282503 YP_207217.1 CDS NGO0036 NC_002946.2 32252 34165 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 32252..34165 Neisseria gonorrhoeae FA 1090 3281875 YP_207218.1 CDS NGO0037 NC_002946.2 34412 35740 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(34412..35740) Neisseria gonorrhoeae FA 1090 3282401 YP_207219.1 CDS NGO0039 NC_002946.2 36107 36460 D Best Blastp Hit: pir||D81978 hypothetical protein NMA0591 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379327|emb|CAB83882.1| (AL162753) hypothetical protein NMA0591 [Neisseria meningitidis]; hypothetical protein 36107..36460 Neisseria gonorrhoeae FA 1090 3282360 YP_207220.1 CDS NGO0040 NC_002946.2 36524 37804 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 36524..37804 Neisseria gonorrhoeae FA 1090 3282386 YP_207221.1 CDS NGO0042 NC_002946.2 39110 39673 R 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease complement(39110..39673) Neisseria gonorrhoeae FA 1090 3282379 YP_207222.1 CDS prmA NC_002946.2 39691 40578 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase complement(39691..40578) Neisseria gonorrhoeae FA 1090 3282387 YP_207223.1 CDS NGO0044 NC_002946.2 40682 42043 R Best Blastp Hit: pir||F81033 acetyl-CoA carboxylase, biotin carboxylase NMB1861 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227118|gb|AAF42195.1| (AE002536) acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis MC58]; COG0439 Biotin carboxylase; acetyl-CoA carboxylase, biotin carboxylase complement(40682..42043) Neisseria gonorrhoeae FA 1090 3282361 YP_207224.1 CDS NGO0045 NC_002946.2 42157 42618 R composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit complement(42157..42618) Neisseria gonorrhoeae FA 1090 3282340 YP_207225.1 CDS NGO0046 NC_002946.2 42600 42857 R hypothetical protein complement(42600..42857) Neisseria gonorrhoeae FA 1090 3282375 YP_207226.1 CDS queA NC_002946.2 42974 44014 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 42974..44014 Neisseria gonorrhoeae FA 1090 3282377 YP_207227.1 CDS carB NC_002946.2 44215 47430 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(44215..47430) Neisseria gonorrhoeae FA 1090 3282357 YP_207228.1 CDS NGO0049 NC_002946.2 47441 47974 R Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); hypothetical protein complement(47441..47974) Neisseria gonorrhoeae FA 1090 3282365 YP_207229.1 CDS NGO0050 NC_002946.2 49539 49928 R Best Blastp Hit: gb|AAC78450.1| (AF029362) similar to E. coli ORF, encoded by GenBank Accession Number X97282; and to H. influenzae protein HI0925, encoded by GenBank Accession Number U32774; and to H. influenzae protein HI1162, encoded by GenBank Accession Number U32796 [Neisseria g>; hypothetical protein complement(49539..49928) Neisseria gonorrhoeae FA 1090 3282350 YP_207230.1 CDS NGO0053 NC_002946.2 50524 51657 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(50524..51657) Neisseria gonorrhoeae FA 1090 3282335 YP_207231.1 CDS NGO0054 NC_002946.2 51927 52244 D Best Blastp Hit: gb|AAD38303.1|AF036242_3 (AF036242) unknown [Neisseria meningitidis]; hypothetical protein 51927..52244 Neisseria gonorrhoeae FA 1090 3282336 YP_207232.1 CDS NGO0055 NC_002946.2 52527 55670 R PilC1; Best Blastp Hit: possibly phase variable - 13G residue homopolymer repeat in the coding sequence (ON); pilus-associated protein complement(52527..55670) Neisseria gonorrhoeae FA 1090 3282341 YP_207233.1 CDS NGO0056 NC_002946.2 57122 58201 R Mrp; Best Blastp Hit: pir||G81980 hypothetical protein NMA0611 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379346|emb|CAB83901.1| (AL162753) hypothetical protein NMA0611 [Neisseria meningitidis]; COG0489 ATPases involved in chromosome partitioning; ATPase complement(57122..58201) Neisseria gonorrhoeae FA 1090 3282337 YP_207234.1 CDS NGO0057 NC_002946.2 58575 59084 D Best Blastp Hit: emb|CAB83902.1| (AL162753) periplasmic thioredoxin [Neisseria meningitidis]; COG0526 Thiol-disulfide isomerase and thioredoxins; thioredoxin 58575..59084 Neisseria gonorrhoeae FA 1090 3282274 YP_207235.1 CDS NGO0058 NC_002946.2 59488 59865 D Best Blastp Hit: gb|AAF42178.1| (AE002534) transcriptional regulator, MarR family [Neisseria meningitidis MC58] >gi|7379348|emb|CAB83903.1| (AL162753) marR-family transcriptional regulator [Neisseria meningitidis]; COG1846 Transcriptional regulators, MarR/EmrR; MarR family transcriptional regulator 59488..59865 Neisseria gonorrhoeae FA 1090 3282324 YP_207236.1 CDS NGO0059 NC_002946.2 59981 60481 D Best Blastp Hit: pir||B81981 probable 4-hydroxyphenylacetate 3-monooxygenase (EC 1.14.13.3) small chain NMA0614 [similarity] - Neisseria meningitidis (group A strain Z2491) >gi|7379349|emb|CAB83904.1| (AL162753) NADH:FMN oxidoreductase [Neisseria meningitidis]; COG1853 Conserved protein/domain typically; flavoprotein oxidoreductase 59981..60481 Neisseria gonorrhoeae FA 1090 3282327 YP_207237.1 CDS NGO0060 NC_002946.2 60497 61192 D Best Blastp Hit: gb|AAF42176.1| (AE002534) mannose-1-phosphate guanyltransferase-related protein [Neisseria meningitidis MC58]; COG1208 Nucleoside-diphosphate-sugar; sugar-phosphate transferase 60497..61192 Neisseria gonorrhoeae FA 1090 3282348 YP_207238.1 CDS NGO0062 NC_002946.2 61831 63507 D catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 61831..63507 Neisseria gonorrhoeae FA 1090 3282323 YP_207239.1 CDS NGO0063 NC_002946.2 63621 64712 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 63621..64712 Neisseria gonorrhoeae FA 1090 3282306 YP_207240.1 CDS NGO0064 NC_002946.2 64750 64989 D Best Blastp Hit: gb|AAF42172.1| (AE002533) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 64750..64989 Neisseria gonorrhoeae FA 1090 3282310 YP_207241.1 CDS NGO0065 NC_002946.2 64986 66860 D Best Blastp Hit: gb|AAF42171.1| (AE002533) lipopolysaccharide biosynthesis protein WbpC, [Neisseria meningitidis MC58]; COG1835 Predicted acyltransferases; lipo-oligosaccharide acyltransferase 64986..66860 Neisseria gonorrhoeae FA 1090 3282317 YP_207242.1 CDS NGO0066 NC_002946.2 66922 68217 D TyrRS; Best Blastp Hit: pir||A81037 tyrosyl-tRNA synthetase NMB1835 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227090|gb|AAF42170.1| (AE002533) tyrosyl-tRNA synthetase [Neisseria meningitidis MC58]; COG0162 Tyrosyl-tRNA synthetase; tyrosyl-tRNA synthase 66922..68217 Neisseria gonorrhoeae FA 1090 3282277 YP_207243.1 CDS NGO0068 NC_002946.2 70214 71173 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 70214..71173 Neisseria gonorrhoeae FA 1090 3282316 YP_207244.1 CDS ileS NC_002946.2 71315 74104 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 71315..74104 Neisseria gonorrhoeae FA 1090 3282308 YP_207245.1 CDS NGO0070 NC_002946.2 74783 75580 R OpaB; Best Blastp Hit: phase variable - 10 tandem repeats of CTCTT in the coding sequence (ON); outer membrane opacity protein B complement(74783..75580) Neisseria gonorrhoeae FA 1090 3282321 YP_207246.1 CDS lspA NC_002946.2 76565 77059 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 76565..77059 Neisseria gonorrhoeae FA 1090 3282278 YP_207247.1 CDS ispH NC_002946.2 77089 78057 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 77089..78057 Neisseria gonorrhoeae FA 1090 3282290 YP_207248.1 CDS NGO0073 NC_002946.2 78813 79472 R Best Blastp Hit: gb|AAF42165.1| (AE002532) phosphoglycolate phosphatase, [Neisseria meningitidis MC58]; COG0546 Predicted phosphatases; phosphatase complement(78813..79472) Neisseria gonorrhoeae FA 1090 3282279 YP_207249.1 CDS NGO0076 NC_002946.2 80406 80726 D Best Blastp Hit: gb|AAF42163.1| (AE002532) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 80406..80726 Neisseria gonorrhoeae FA 1090 3282261 YP_207250.1 CDS NGO0077 NC_002946.2 80714 81337 D Best Blastp Hit: gb|AAF42163.1| (AE002532) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 80714..81337 Neisseria gonorrhoeae FA 1090 3282275 YP_207251.1 CDS NGO0078 NC_002946.2 81989 85423 R Best Blastp Hit: pir||H81037 DNA polymerase III, alpha chain NMB1827 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227081|gb|AAF42162.1| (AE002532) DNA polymerase III, alpha subunit [Neisseria meningitidis MC58]; COG0587 DNA-dependent DNA polymerase III alpha; DNA polymerase III subunit alpha complement(81989..85423) Neisseria gonorrhoeae FA 1090 3282282 YP_207252.1 CDS NGO0079 NC_002946.2 85956 86189 D Best Blastp Hit: emb|CAB83923.1| (AL162753) hypothetical protein NMA0633 [Neisseria meningitidis]; hypothetical protein 85956..86189 Neisseria gonorrhoeae FA 1090 3283048 YP_207253.1 CDS NGO0080 NC_002946.2 86167 86370 D Best Blastp Hit: gb|AAF42160.1| (AE002532) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 86167..86370 Neisseria gonorrhoeae FA 1090 3282269 YP_207254.1 CDS NGO0081 NC_002946.2 86665 87501 D Best Blastp Hit: pir||A81040 conserved hypothetical protein NMB1824 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227077|gb|AAF42159.1| (AE002531) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0613 Predicted metal-dependent phosphoesterases; hypothetical protein 86665..87501 Neisseria gonorrhoeae FA 1090 3282263 YP_207255.1 CDS avtA NC_002946.2 87553 88845 R transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis; valine--pyruvate transaminase complement(87553..88845) Neisseria gonorrhoeae FA 1090 3282138 YP_207256.1 CDS NGO0083 NC_002946.2 88901 90811 R PglD; Best Blastp Hit: pir||G81039 pilin glycosylation protein PglD NMB1822 [imported] - Neisseria meningitidis (group B strain MD58) >gi|3299891|gb|AAC25981.1| (AF014804) PglD [Neisseria meningitidis] >gi|7227075|gb|AAF42157.1| (AE002531) pilin glycosylation protein PglD [Neisseria meningitidis MC58]; COG1086 Predicted nucleoside-diphosphate sugar; pilin glycosylation protein complement(88901..90811) Neisseria gonorrhoeae FA 1090 3282320 YP_207257.1 CDS NGO0084 NC_002946.2 90859 92034 R Best Blastp Hit: pir||H81983 pilin glycosylation protein NMA0638 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379371|emb|CAB83928.1| (AL162753) pilin glycosylation protein [Neisseria meningitidis]; COG0399 Predicted pyridoxal phosphate-dependent; protein PglC; pilin glycosylation protein complement(90859..92034) Neisseria gonorrhoeae FA 1090 3282259 YP_207258.1 CDS NGO0085 NC_002946.2 92165 93406 R Best Blastp Hit: gb|AAC25979.1| (AF014804) PglB [Neisseria meningitidis] >gi|7227073|gb|AAF42155.1| (AE002531) pilin glycosylation protein PglB [Neisseria meningitidis MC58]; COG2148 Sugar transferases involved in; PglB protein complement(92165..93406) Neisseria gonorrhoeae FA 1090 3282309 YP_207259.1 CDS NGO0086 NC_002946.2 93399 94565 R Best Blastp Hit: possibly phase variable - 10C residue homopolymer repeat in the coding sequence (ON); COG0438 Glycosyltransferases I; hypothetical protein complement(93399..94565) Neisseria gonorrhoeae FA 1090 3282285 YP_207260.1 CDS NGO0087 NC_002946.2 94579 95643 R Best Blastp Hit: gb|AAF84279.1|AE003977_2 (AE003977) conserved hypothetical protein [Xylella fastidiosa]; COG0438 Glycosyltransferases I; hypothetical protein complement(94579..95643) Neisseria gonorrhoeae FA 1090 3282283 YP_207261.1 CDS NGO0088 NC_002946.2 95640 97061 R Best Blastp Hit: pir||C81984 probable lipopolysaccharide biosynthesis translocase NMA0643 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379374|emb|CAB83932.1| (AL162753) lipopolysaccharide biosynthesis translocase [Neisseria meningitidis]; COG2244 Membrane protein involved in the export of; hypothetical protein complement(95640..97061) Neisseria gonorrhoeae FA 1090 3282288 YP_207262.1 CDS NGO0089 NC_002946.2 97256 98365 R Best Blastp Hit: pir||D81984 riboflavin bifunctional biosynthesis protein ribD NMA0644 [similarity] - Neisseria meningitidis (group A strain Z2491) >gi|7379375|emb|CAB83933.1| (AL162753) diaminohydroxyphosphoribosylaminopyrimidine deaminase/phosphoribosylamino)uracil reductase [Neisseria meningitidis]; COG0117 Pyrimidine deaminase, riboflavin; diaminohydroxyphosphoribosylaminopyrimidine deaminase complement(97256..98365) Neisseria gonorrhoeae FA 1090 3282253 YP_207263.1 CDS nrdR NC_002946.2 98397 98849 R Best Blastp Hit: pir||A81039 conserved hypothetical protein NMB1816 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227069|gb|AAF42151.1| (AE002531) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1327 Uncharacterized BCR; transcriptional regulator NrdR complement(98397..98849) Neisseria gonorrhoeae FA 1090 3282251 YP_207264.1 CDS NGO0091 NC_002946.2 98878 99720 R Best Blastp Hit: pir||H81038 conserved hypothetical protein NMB1815 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227068|gb|AAF42150.1| (AE002531) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0121 Predicted glutamine amidotransferase; hypothetical protein complement(98878..99720) Neisseria gonorrhoeae FA 1090 3282132 YP_207265.1 CDS aroB NC_002946.2 100459 101538 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(100459..101538) Neisseria gonorrhoeae FA 1090 3282137 YP_207266.1 CDS aroK NC_002946.2 101618 102130 R catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase complement(101618..102130) Neisseria gonorrhoeae FA 1090 3282244 YP_207267.1 CDS NGO0094 NC_002946.2 103398 105569 R Best Blastp Hit: pir||S70838 pilQ protein - Neisseria gonorrhoeae >gi|1173875|gb|AAC43603.1| (U40596) PilQ [Neisseria gonorrhoeae] >gi|1589217|prf||2210365A pilQ gene [Neisseria gonorrhoeae]; COG1450 General secretion pathway protein D; hypothetical protein complement(103398..105569) Neisseria gonorrhoeae FA 1090 3282403 YP_207268.1 CDS NGO0095 NC_002946.2 105588 106133 R Best Blastp Hit: pir||C81041 pilus assembly protein NMA0651 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227064|gb|AAF42147.1| (AE002530) pilP protein [Neisseria meningitidis MC58] >gi|7379381|emb|CAB83939.1| (AL162753) pilus assembly protein [Neisseria meningitidis]; pilin assembly protein; PilP protein complement(105588..106133) Neisseria gonorrhoeae FA 1090 3282291 YP_207269.1 CDS NGO0096 NC_002946.2 106151 106798 R Best Blastp Hit: gb|AAB52533.1| (U72876) PilO [Neisseria gonorrhoeae]; hypothetical protein complement(106151..106798) Neisseria gonorrhoeae FA 1090 3282139 YP_207270.1 CDS NGO0097 NC_002946.2 106799 107398 R Best Blastp Hit: pir||D81985 probable pilus assembly protein NMA0653 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379383|emb|CAB83941.1| (AL162753) pilus assembly protein [Neisseria meningitidis]; PilN complement(106799..107398) Neisseria gonorrhoeae FA 1090 3282268 YP_207271.1 CDS NGO0098 NC_002946.2 107401 108516 R Best Blastp Hit: gb|AAB52535.1| (U72876) PilM [Neisseria gonorrhoeae]; COG0849 Predicted ATPases of the HSP70 class; hypothetical protein complement(107401..108516) Neisseria gonorrhoeae FA 1090 3282223 YP_207272.1 CDS NGO0099 NC_002946.2 108668 111064 D Best Blastp Hit: gb|AAB52536.1| (U72876) penicillin-binding protein 1 [Neisseria gonorrhoeae]; COG0744 Membrane carboxypeptidase; protein PonA; penicillin-binding protein 1 108668..111064 Neisseria gonorrhoeae FA 1090 3282452 YP_207273.1 CDS engB NC_002946.2 111184 111819 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(111184..111819) Neisseria gonorrhoeae FA 1090 3282443 YP_207274.1 CDS NGO0101 NC_002946.2 112020 112643 D Best Blastp Hit: pir||F81040 cytochrome C4 NMB1805 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227059|gb|AAF42142.1| (AE002530) cytochrome c4 [Neisseria meningitidis MC58] >gi|7379387|emb|CAB83945.1| (AL162753) cytochrome C [Neisseria meningitidis]; cytochrome precursor 112020..112643 Neisseria gonorrhoeae FA 1090 3282451 YP_207275.1 CDS NGO0102 NC_002946.2 112858 114873 D Best Blastp Hit: pir||E81040 cytochrome c-type biogenesis protein, probable NMB1804 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227058|gb|AAF42141.1| (AE002530) cytochrome c-type biogenesis protein, [Neisseria meningitidis MC58]; COG1333 ResB protein required for cytochrome c; cytochrome biogenesis protein 112858..114873 Neisseria gonorrhoeae FA 1090 3282446 YP_207276.1 CDS NGO0103 NC_002946.2 114866 116053 D Best Blastp Hit: emb|CAB83947.1| (AL162753) membrane protein [Neisseria meningitidis]; COG0755 Cytochrome c biogenesis factors, CcmC; cytochrome synthesis protein 114866..116053 Neisseria gonorrhoeae FA 1090 3282441 YP_207277.1 CDS NGO0104 NC_002946.2 116169 117233 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 116169..117233 Neisseria gonorrhoeae FA 1090 3282444 YP_207278.1 CDS NGO0105 NC_002946.2 117278 118171 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase complement(117278..118171) Neisseria gonorrhoeae FA 1090 3282380 YP_207279.2 CDS NGO0106 NC_002946.2 118517 119686 D methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 118517..119686 Neisseria gonorrhoeae FA 1090 3282432 YP_207280.1 CDS NGO0107 NC_002946.2 119751 121160 R Best Blastp Hit: gb|AAC24040.1| (AF071224) penicillin binding protein 3 [Neisseria gonorrhoeae]; COG2027 D-alanyl-D-alanine carboxypeptidase; carboxypeptidase, penicillin binding protein complement(119751..121160) Neisseria gonorrhoeae FA 1090 3282411 YP_207281.1 CDS NGO0108 NC_002946.2 121405 121890 D Best Blastp Hit: pir||B81042 conserved hypothetical protein NMB1796 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227050|gb|AAF42134.1| (AE002529) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0431 Predicted flavoprotein; hypothetical protein 121405..121890 Neisseria gonorrhoeae FA 1090 3282425 YP_207282.1 CDS NGO0109 NC_002946.2 121880 122068 D hypothetical protein 121880..122068 Neisseria gonorrhoeae FA 1090 3282413 YP_207283.1 CDS NGO0110 NC_002946.2 122259 123572 D Best Blastp Hit: gb|AAF42132.1| (AE002529) citrate transporter [Neisseria meningitidis MC58] >gi|7379397|emb|CAB83955.1| (AL162753) transmembrane transport protein [Neisseria meningitidis]; magnesium citrate secondary transporter 122259..123572 Neisseria gonorrhoeae FA 1090 3282426 YP_207284.1 CDS NGO0112 NC_002946.2 124550 125800 D Best Blastp Hit: gb|AAG24266.1|AF139612_3 (AF139612) BasS [Neisseria gonorrhoeae]; COG0642 Sensory transduction histidine kinases; two-component system sensor kinase 124550..125800 Neisseria gonorrhoeae FA 1090 3282418 YP_207285.1 CDS NGO0113 NC_002946.2 125835 127328 R Best Blastp Hit: emb|CAB83959.1| (AL162753) hypothetical protein NMA0672 [Neisseria meningitidis]; COG1530 Ribonucleases G and E; ribonuclease G / cytoplasmic axial filament protein complement(125835..127328) Neisseria gonorrhoeae FA 1090 3282417 YP_207286.1 CDS NGO0114 NC_002946.2 127547 127804 D Best Blastp Hit: gb|AAF42129.1| (AE002529) glutaredoxin 3 [Neisseria meningitidis MC58]; COG0695 Glutaredoxin and related proteins; glutaredoxin 127547..127804 Neisseria gonorrhoeae FA 1090 3283078 YP_207287.1 CDS NGO0115 NC_002946.2 127801 128310 R Best Blastp Hit: sp|P15041|YZSB_ECOLI very hypothetical 17.7 kD protein in SecB region>gi|76221|pir||QQEC17 hypothetical 17.7K protein (secB region) - Escherichia coli >gi|1128972|gb|AAA83908.1| (M24489) ORF; [Escherichia coli]; hypothetical protein complement(127801..128310) Neisseria gonorrhoeae FA 1090 3282410 YP_207288.1 CDS NGO0116 NC_002946.2 127825 128268 D molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 127825..128268 Neisseria gonorrhoeae FA 1090 3282400 YP_207289.1 CDS NGO0117 NC_002946.2 128354 130396 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 128354..130396 Neisseria gonorrhoeae FA 1090 3282408 YP_207290.1 CDS argC NC_002946.2 130990 132033 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(130990..132033) Neisseria gonorrhoeae FA 1090 3282346 YP_207291.1 CDS NGO0119 NC_002946.2 132030 132323 R Best Blastp Hit: emb|CAB83964.1| (AL162753) hypothetical protein NMA0677 [Neisseria meningitidis]; hypothetical protein complement(132030..132323) Neisseria gonorrhoeae FA 1090 3282406 YP_207292.1 CDS NGO0120 NC_002946.2 132347 132475 D hypothetical protein 132347..132475 Neisseria gonorrhoeae FA 1090 3282405 YP_207293.1 CDS NGO0121 NC_002946.2 132575 133729 D Best Blastp Hit: gb|AAF42125.1| (AE002528) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 132575..133729 Neisseria gonorrhoeae FA 1090 3282395 YP_207294.1 CDS NGO0122 NC_002946.2 133904 134311 D Best Blastp Hit: pir||F81988 hypothetical protein NMA0681 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379409|emb|CAB83968.1| (AL162753) hypothetical protein NMA0681 [Neisseria meningitidis]; hypothetical protein 133904..134311 Neisseria gonorrhoeae FA 1090 3282398 YP_207295.1 CDS NGO0123 NC_002946.2 134372 135646 D Best Blastp Hit: gb|AAF61809.1| (AF129811) unknown [Moraxella catarrhalis]; COG1566 Multidrug resistance efflux pump; secretion protein 134372..135646 Neisseria gonorrhoeae FA 1090 3282391 YP_207296.1 CDS NGO0124 NC_002946.2 135831 136178 D Best Blastp Hit: sp|O24528|MT1_FESRU metallothionein-like protein 1 >gi|2317922|gb|AAB70464.1| (U96646) mcMT1 [Festuca rubra]; hypothetical protein 135831..136178 Neisseria gonorrhoeae FA 1090 3281936 YP_207297.1 CDS NGO0125 NC_002946.2 136192 136407 D Best Blastp Hit: pir||B70183 conserved hypothetical protein BB0667 - Lyme disease spirochete >gi|2688586|gb|AAC67004.1| (AE001167) conserved hypothetical protein [Borrelia burgdorferi]; hypothetical protein 136192..136407 Neisseria gonorrhoeae FA 1090 3281221 YP_207298.1 CDS rbn NC_002946.2 137771 138997 R RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; this protein contains a C-terminal extension of unknown function; ribonuclease BN/hypothetical protein complement(137771..138997) Neisseria gonorrhoeae FA 1090 3281248 YP_207299.1 CDS NGO0128 NC_002946.2 139096 139476 D Best Blastp Hit: gb|AAC33457.1| (AF067083) Trp repressor binding protein [Vitreoscilla sp.]; hypothetical protein 139096..139476 Neisseria gonorrhoeae FA 1090 3281234 YP_207300.1 CDS NGO0129 NC_002946.2 139485 140159 D Best Blastp Hit: pir||C81913 hypothetical protein NMA0702 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379427|emb|CAB83989.1| (AL162754) hypothetical protein NMA0702 [Neisseria meningitidis]; COG0603 Predicted ATPase (PP-loop superfamily); aluminum resistance protein; YbaX 139485..140159 Neisseria gonorrhoeae FA 1090 3282488 YP_207301.1 CDS NGO0130 NC_002946.2 140187 140702 D Best Blastp Hit: pir||D81913 hypothetical protein NMA0703 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379428|emb|CAB83990.1| (AL162754) hypothetical protein NMA0703 [Neisseria meningitidis]; hypothetical protein 140187..140702 Neisseria gonorrhoeae FA 1090 3281252 YP_207302.1 CDS NGO0131 NC_002946.2 140790 141212 D Best Blastp Hit: pir||E81913 hypothetical protein NMA0704 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379429|emb|CAB83991.1| (AL162754) hypothetical protein NMA0704 [Neisseria meningitidis]; COG0720 6-pyruvoyl-tetrahydropterin synthase; 6-pyruvoyl tetrahydrobiopterin synthase 140790..141212 Neisseria gonorrhoeae FA 1090 3281264 YP_207303.1 CDS NGO0132 NC_002946.2 141478 142485 D Best Blastp Hit: emb|CAB83993.1| (AL162754) hypothetical protein NMA0707 [Neisseria meningitidis]; COG0602 Organic radical activating enzymes; hypothetical protein 141478..142485 Neisseria gonorrhoeae FA 1090 3281233 YP_207304.1 CDS NGO0133 NC_002946.2 142700 142903 D Best Blastp Hit: dbj|BAA98955.1| (AP002547) CT631 hypothetical protein [Chlamydophila pneumoniae]; hypothetical protein 142700..142903 Neisseria gonorrhoeae FA 1090 3282468 YP_207305.1 CDS NGO0135 NC_002946.2 142978 144063 R hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase complement(142978..144063) Neisseria gonorrhoeae FA 1090 3281288 YP_207306.1 CDS NGO0136 NC_002946.2 144120 145640 R Best Blastp Hit: gb|AAF40961.1| (AE002408) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1757 Na+/H+ antiporter NhaC; hypothetical protein complement(144120..145640) Neisseria gonorrhoeae FA 1090 3281295 YP_207307.1 CDS NGO0137 NC_002946.2 145668 145817 D hypothetical protein 145668..145817 Neisseria gonorrhoeae FA 1090 3282110 YP_207308.1 CDS NGO0138 NC_002946.2 145843 147342 R Best Blastp Hit: pir||B81914 probable periplasmic serine proteinase (EC 3.4.21.-) NMA0710 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379434|emb|CAB83996.1| (AL162754) periplasmic serine protease [Neisseria meningitidis]; COG0265 Trypsin-like serine proteases, typically; serine protease complement(145843..147342) Neisseria gonorrhoeae FA 1090 3281276 YP_207309.1 CDS NGO0139 NC_002946.2 147480 148109 R Best Blastp Hit: pir||D81187 endonuclease III NMB0533 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225758|gb|AAF40962.1| (AE002409) endonuclease III [Neisseria meningitidis MC58]; COG0177 Predicted EndoIII-related endonuclease; endonuclease III complement(147480..148109) Neisseria gonorrhoeae FA 1090 3281300 YP_207310.1 CDS NGO0140 NC_002946.2 148156 148692 R Best Blastp Hit: pir||D81914 probable membrane protein NMA0712 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379436|emb|CAB83998.1| (AL162754) membrane protein [Neisseria meningitidis]; COG1238 Uncharacterized membrane protein; hypothetical protein complement(148156..148692) Neisseria gonorrhoeae FA 1090 3281291 YP_207311.1 CDS NGO0141 NC_002946.2 148719 148865 D hypothetical protein 148719..148865 Neisseria gonorrhoeae FA 1090 3281965 YP_207312.1 CDS NGO0142 NC_002946.2 148948 150228 D Best Blastp Hit: pir||F81187 glucose/galactose transporter NMB0535 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225760|gb|AAF40964.1| (AE002409) glucose/galactose transporter [Neisseria meningitidis MC58]; COG0738 Fucose permease; sugar transporter 148948..150228 Neisseria gonorrhoeae FA 1090 3281278 YP_207313.1 CDS NGO0143 NC_002946.2 150518 151897 D Best Blastp Hit: pir||F81914 probable transmembrane transport protein NMA0715 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379438|emb|CAB84000.1| (AL162754) transmembrane transport protein [Neisseria meningitidis]; COG1757 Na+/H+ antiporter NhaC; hypothetical protein 150518..151897 Neisseria gonorrhoeae FA 1090 3281299 YP_207314.1 CDS NGO0144 NC_002946.2 152040 152864 R Best Blastp Hit: pir||G81914 hypothetical protein NMA0716 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379439|emb|CAB84001.1| (AL162754) hypothetical protein NMA0716 [Neisseria meningitidis]; COG1253 Uncharacterized CBS domain-containing; hypothetical protein complement(152040..152864) Neisseria gonorrhoeae FA 1090 3281301 YP_207315.1 CDS NGO0145 NC_002946.2 152866 153501 R Best Blastp Hit: emb|CAB84002.1| (AL162754) hypothetical protein NMA0717 [Neisseria meningitidis]; COG0319 Uncharacterized BCR ( metal-binding; hypothetical protein complement(152866..153501) Neisseria gonorrhoeae FA 1090 3281313 YP_207316.1 CDS hemC NC_002946.2 153500 154435 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 153500..154435 Neisseria gonorrhoeae FA 1090 3281294 YP_207317.1 CDS NGO0147 NC_002946.2 156345 157430 R Best Blastp Hit: emb|CAB84865.1| (AL162756) hypothetical protein [Neisseria meningitidis]; COG0644 Dehydrogenases (flavoproteins); hypothetical protein complement(156345..157430) Neisseria gonorrhoeae FA 1090 3281304 YP_207318.1 CDS NGO0148 NC_002946.2 157367 157582 R hypothetical protein complement(157367..157582) Neisseria gonorrhoeae FA 1090 3282579 YP_207319.1 CDS NGO0149 NC_002946.2 157762 159135 R Best Blastp Hit: gb|AAF41783.1| (AE002491) ATP-dependent RNA helicase, [Neisseria meningitidis MC58]; COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase complement(157762..159135) Neisseria gonorrhoeae FA 1090 3281290 YP_207320.1 CDS NGO0150 NC_002946.2 159159 159347 R hypothetical protein complement(159159..159347) Neisseria gonorrhoeae FA 1090 3281346 YP_207321.1 CDS NGO0151 NC_002946.2 159349 160353 D Best Blastp Hit: pir||G81085 nifR3 protein NMB1421 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226660|gb|AAF41782.1| (AE002491) nifR3 protein [Neisseria meningitidis MC58]; COG0042 Predicted TIM-barrel enzymes, possibly; hypothetical protein 159349..160353 Neisseria gonorrhoeae FA 1090 3281316 YP_207322.1 CDS NGO0152 NC_002946.2 160452 160781 D Best Blastp Hit: gb|AAF41781.1| (AE002491) factor-for-inversion stimulation protein Fis, [Neisseria meningitidis MC58] >gi|7380274|emb|CAB84860.1| (AL162756) factor-for-inversion-stimulation protein [Neisseria meningitidis]; DNA-binding protein Fis 160452..160781 Neisseria gonorrhoeae FA 1090 3283047 YP_207323.2 CDS ruvC NC_002946.2 160784 161320 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 160784..161320 Neisseria gonorrhoeae FA 1090 3281312 YP_207324.1 CDS NGO0154 NC_002946.2 161371 162240 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 161371..162240 Neisseria gonorrhoeae FA 1090 3281330 YP_207325.1 CDS NGO0155 NC_002946.2 162894 163028 D Best Blastp Hit: emb|CAB84857.1| (AL162756) hypothetical DNA-binding protein [Neisseria meningitidis]; hypothetical protein 162894..163028 Neisseria gonorrhoeae FA 1090 3281320 YP_207326.1 CDS NGO0156 NC_002946.2 163144 163938 D Best Blastp Hit: pir||H81856 hypothetical protein NMA1628 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380270|emb|CAB84856.1| (AL162756) hypothetical protein [Neisseria meningitidis]; hypothetical protein 163144..163938 Neisseria gonorrhoeae FA 1090 3281349 YP_207327.1 CDS pepN NC_002946.2 164163 166766 D Best Blastp Hit: pir||F81086 aminopeptidase N NMB1416 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226654|gb|AAF41777.1| (AE002490) aminopeptidase N [Neisseria meningitidis MC58]; COG0308 Aminopeptidase N; aminopeptidase 164163..166766 Neisseria gonorrhoeae FA 1090 3281350 YP_207328.1 CDS NGO0160 NC_002946.2 167614 167805 R Best Blastp Hit: emb|CAB84331.1| (AL162755) hypothetical protein NMA1067 [Neisseria meningitidis]; hypothetical protein complement(167614..167805) Neisseria gonorrhoeae FA 1090 3281354 YP_207329.1 CDS NGO0161 NC_002946.2 167838 168305 R Best Blastp Hit: emb|CAB84332.1| (AL162755) hypothetical protein NMA1068 [Neisseria meningitidis]; hypothetical protein complement(167838..168305) Neisseria gonorrhoeae FA 1090 3281372 YP_207330.1 CDS NGO0162 NC_002946.2 168362 168742 R Best Blastp Hit: gb|AAF41269.1| (AE002438) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(168362..168742) Neisseria gonorrhoeae FA 1090 3281325 YP_207331.1 CDS NGO0163 NC_002946.2 168745 169122 R Best Blastp Hit: pir||F81150 hypothetical protein NMB0859 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226095|gb|AAF41270.1| (AE002438) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(168745..169122) Neisseria gonorrhoeae FA 1090 3281366 YP_207332.1 CDS NGO0164 NC_002946.2 169180 169545 R Best Blastp Hit: emb|CAB84335.1| (AL162755) hypothetical protein NMA1072 [Neisseria meningitidis]; hypothetical protein complement(169180..169545) Neisseria gonorrhoeae FA 1090 3281392 YP_207333.1 CDS NGO0165 NC_002946.2 169527 170066 R Best Blastp Hit: gb|AAF41272.1| (AE002438) hypothetical protein [Neisseria meningitidis MC58] >gi|7379768|emb|CAB84336.1| (AL162755) hypothetical protein NMA1073 [Neisseria meningitidis]; hypothetical protein complement(169527..170066) Neisseria gonorrhoeae FA 1090 3281391 YP_207334.1 CDS NGO0166 NC_002946.2 170109 170975 R Best Blastp Hit: pir||A81874 probable periplasmic protein NMA1084 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379779|emb|CAB84347.1| (AL162755) periplasmic protein [Neisseria meningitidis]; hypothetical protein complement(170109..170975) Neisseria gonorrhoeae FA 1090 3281383 YP_207335.1 CDS NGO0167 NC_002946.2 171011 171226 D hypothetical protein 171011..171226 Neisseria gonorrhoeae FA 1090 3281385 YP_207336.1 CDS NGO0168 NC_002946.2 171195 172121 R Best Blastp Hit: gb|AAG30300.1| (AY010757) periplasmic binding protein MntC [Neisseria gonorrhoeae]; COG0803 Zn-binding (lipo) protein of the ABC-type Zn; ABC transporter substrate-binding protein complement(171195..172121) Neisseria gonorrhoeae FA 1090 3281403 YP_207337.1 CDS NGO0169 NC_002946.2 172198 173025 R Best Blastp Hit: gb|AAF41015.1| (AE002415) membrane protein [Neisseria meningitidis MC58]; COG1108 ABC-type Mn/Zn transport systems, ATPase; ABC transporter membrane protein complement(172198..173025) Neisseria gonorrhoeae FA 1090 3281401 YP_207338.1 CDS NGO0170 NC_002946.2 173108 173863 R Best Blastp Hit: gb|AAF41016.1| (AE002415) ABC transporter ATP-binding protein [Neisseria meningitidis MC58]; COG1121 ABC-type iron (III) transport system, ATPase; ABC transporter ATP-binding protein complement(173108..173863) Neisseria gonorrhoeae FA 1090 3281376 YP_207339.1 CDS rplS NC_002946.2 174154 174519 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(174154..174519) Neisseria gonorrhoeae FA 1090 3281328 YP_207340.1 CDS trmD NC_002946.2 174534 175283 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(174534..175283) Neisseria gonorrhoeae FA 1090 3281334 YP_207341.1 CDS rimM NC_002946.2 175283 175792 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(175283..175792) Neisseria gonorrhoeae FA 1090 3281175 YP_207342.1 CDS rpsP NC_002946.2 175808 176053 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(175808..176053) Neisseria gonorrhoeae FA 1090 3281160 YP_207343.1 CDS NGO0176 NC_002946.2 178639 180045 R Best Blastp Hit: gb|AAF41022.1| (AE002415) sensor histidine kinase [Neisseria meningitidis MC58]; COG0642 Sensory transduction histidine kinases; two-component system sensor kinase complement(178639..180045) Neisseria gonorrhoeae FA 1090 3281293 YP_207344.1 CDS NGO0177 NC_002946.2 180058 180735 R Best Blastp Hit: pir||H81180 DNA-binding response regulator NMB0595 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225825|gb|AAF41023.1| (AE002415) DNA-binding response regulator [Neisseria meningitidis MC58] >gi|7379518|emb|CAB84081.1| (AL162754) two-component system regulator [Neisseria meningitidis]; COG0745 Response regulators consisting of a; two-component system transcriptional response regulator complement(180058..180735) Neisseria gonorrhoeae FA 1090 3281311 YP_207345.1 CDS NGO0178 NC_002946.2 180925 182739 R Best Blastp Hit: pir||A81181 hypothetical protein NMB0596 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225826|gb|AAF41024.1| (AE002415) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(180925..182739) Neisseria gonorrhoeae FA 1090 3281327 YP_207346.1 CDS NGO0179 NC_002946.2 182729 183082 R Best Blastp Hit: pir||B81181 hypothetical protein NMB0597 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225827|gb|AAF41025.1| (AE002415) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(182729..183082) Neisseria gonorrhoeae FA 1090 3283046 YP_207347.1 CDS NGO0180 NC_002946.2 183091 183738 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(183091..183738) Neisseria gonorrhoeae FA 1090 3281464 YP_207348.1 CDS NGO0181 NC_002946.2 183743 184513 R Best Blastp Hit: pir||C81925 probable sec-independent protein translocase component NMA0803 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379523|emb|CAB84086.1| (AL162754) sec-independent protein translocase component [Neisseria meningitidis]; COG0805 Sec-independent protein secretion pathway; sec-independent protein translocase component complement(183743..184513) Neisseria gonorrhoeae FA 1090 3281433 YP_207349.1 CDS NGO0182 NC_002946.2 184526 185212 R Best Blastp Hit: pir||E81181 hypothetical protein NMB0600 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225830|gb|AAF41028.1| (AE002415) hypothetical protein [Neisseria meningitidis MC58]; sec-independent protein translocase component complement(184526..185212) Neisseria gonorrhoeae FA 1090 3281448 YP_207350.1 CDS tatA NC_002946.2 185216 185419 R TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase A complement(185216..185419) Neisseria gonorrhoeae FA 1090 3281482 YP_207351.1 CDS NGO0184 NC_002946.2 185466 185789 R Best Blastp Hit: sp|O07817|HITA_NEIGO HITA protein >gi|2197079|gb|AAB61288.1| (AF003550) HitA [Neisseria gonorrhoeae]; COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase; histidine triad-family protein; HitA protein complement(185466..185789) Neisseria gonorrhoeae FA 1090 3281428 YP_207352.1 CDS hisE NC_002946.2 185863 186186 R catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase complement(185863..186186) Neisseria gonorrhoeae FA 1090 3281511 YP_207353.1 CDS NGO0186 NC_002946.2 186327 187391 R Best Blastp Hit: pir||H81925 probable alcohol dehydrogenase (EC 1.1.1.-) NMA0808 [similarity] - Neisseria meningitidis (group A strain Z2491) >gi|7379528|emb|CAB84091.1| (AL162754) zinc-binding alcohol dehydrogenase [Neisseria meningitidis]; COG1065 Zn-dependent oxidoreductases; zinc-binding alcohol dehydrogenas complement(186327..187391) Neisseria gonorrhoeae FA 1090 3281536 YP_207354.1 CDS NGO0187 NC_002946.2 188256 189374 R Best Blastp Hit: gb|AAF41032.1| (AE002416) histone deacetylase [Neisseria meningitidis MC58]; COG0123 Deacetylases, including yeast histone; hypothetical protein complement(188256..189374) Neisseria gonorrhoeae FA 1090 3281567 YP_207355.1 CDS NGO0188 NC_002946.2 189505 189771 D Best Blastp Hit: gb|AAF41033.1| (AE002416) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1862 Uncharacterized secreted proteins, YajC; hypothetical protein 189505..189771 Neisseria gonorrhoeae FA 1090 3281554 YP_207356.1 CDS secD NC_002946.2 189979 191835 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 189979..191835 Neisseria gonorrhoeae FA 1090 3281517 YP_207357.1 CDS secF NC_002946.2 191839 192774 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 191839..192774 Neisseria gonorrhoeae FA 1090 3281564 YP_207358.1 CDS rpsO NC_002946.2 192979 193248 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 192979..193248 Neisseria gonorrhoeae FA 1090 3281588 YP_207359.1 CDS NGO0192 NC_002946.2 193358 194650 D Best Blastp Hit: gb|AAF41037.1| (AE002416) spermidine/putrescine ABC transporter ATP-binding protein [Neisseria meningitidis MC58]; COG1128 ABC-type spermidine/putrescine transport; ABC transporter ATP-binding protein, polyamine 193358..194650 Neisseria gonorrhoeae FA 1090 3281640 YP_207360.1 CDS NGO0195 NC_002946.2 194984 195949 D Best Blastp Hit: gb|AAF41038.1| (AE002416) spermidine/putrescine ABC transporter permease [Neisseria meningitidis MC58]; COG1176 ABC-type spermidine/putrescine transport; ABC transporter permease, polyamine 194984..195949 Neisseria gonorrhoeae FA 1090 3281667 YP_207361.1 CDS NGO0196 NC_002946.2 195949 196836 D Best Blastp Hit: pir||E81179 spermidine/putrescine ABC transporter permease NMB0612 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225842|gb|AAF41039.1| (AE002416) spermidine/putrescine ABC transporter permease [Neisseria meningitidis MC58]; COG1177 ABC-type spermidine/putrescine transport; ABC transporter permease, polyamine 195949..196836 Neisseria gonorrhoeae FA 1090 3281651 YP_207362.1 CDS NGO0197 NC_002946.2 196858 198258 D Best Blastp Hit: possible phase variable - 8T residue homopolymer repeat in the coding sequence (ON); COG0665 Predicted oxidoreductases; oxidoreductase 196858..198258 Neisseria gonorrhoeae FA 1090 3281682 YP_207363.1 CDS NGO0198 NC_002946.2 198352 199818 R Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); COG0004 Ammonia permeases; transporter ammonium complement(198352..199818) Neisseria gonorrhoeae FA 1090 3281685 YP_207364.1 CDS rho NC_002946.2 200272 201531 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(200272..201531) Neisseria gonorrhoeae FA 1090 3281719 YP_207365.1 CDS NGO0200 NC_002946.2 201752 204136 R catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase complement(201752..204136) Neisseria gonorrhoeae FA 1090 3281742 YP_207366.1 CDS NGO0201 NC_002946.2 204491 205144 D Best Blastp Hit: pir||G81087 IS1016C2 transposase NMB1411 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226649|gb|AAF41773.1| (AE002489) IS1016C2 transposase [Neisseria meningitidis MC58]; IS1016 transposase 204491..205144 Neisseria gonorrhoeae FA 1090 3281705 YP_207367.1 CDS NGO0202 NC_002946.2 205270 206091 D Best Blastp Hit: pir||H81177 conserved hypothetical protein NMB0619 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225849|gb|AAF41045.1| (AE002417) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1806 Uncharacterized BCR, YdiA family; hypothetical protein 205270..206091 Neisseria gonorrhoeae FA 1090 3281768 YP_207368.1 CDS NGO0203 NC_002946.2 206177 206887 R Best Blastp Hit: gb|AAF41046.1| (AE002417) phosphoglycolate phosphatase [Neisseria meningitidis MC58]; COG0546 Predicted phosphatases; phosphatase complement(206177..206887) Neisseria gonorrhoeae FA 1090 3282551 YP_207369.1 CDS NGO0204 NC_002946.2 206877 207704 R Best Blastp Hit: pir||B81178 conserved hypothetical protein NMB0621 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225851|gb|AAF41047.1| (AE002417) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(206877..207704) Neisseria gonorrhoeae FA 1090 3281097 YP_207370.1 CDS NGO0205 NC_002946.2 208087 208710 D Best Blastp Hit: sp|P57068|LOLA_NEIMB outer-membrane lipoproteins carrier protein precursor >gi|11281795|pir||C81178 outer membrane lipoprotein carrier protein NMB0622 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225852|gb|AAF41048.1| (AE002417) outer membrane lipoprotein carrier protein [Neisseria meningitidis MC58]; lipoprotein carrier precursor, periplasmic binding; LolA protein 208087..208710 Neisseria gonorrhoeae FA 1090 3282546 YP_207371.1 CDS NGO0206 NC_002946.2 208983 210119 D Best Blastp Hit: pir||D81176 spermidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein NMB0623 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225854|gb|AAF41049.1| (AE002418) spermidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein [Neisseria meningitidis MC58]; COG0687 Spermidine/putrescine-binding periplasmic; ABC transporter periplasmic binding protein, polyamine 208983..210119 Neisseria gonorrhoeae FA 1090 3281089 YP_207372.1 CDS NGO0207 NC_002946.2 210214 211197 D Best Blastp Hit: possibly phase variable - 5 tandem repeats of CAAACAC in the coding sequence (ON); COG0463 Glycosyl transferases involved in cell wall; sugar transferase 210214..211197 Neisseria gonorrhoeae FA 1090 3281408 YP_207373.1 CDS NGO0208 NC_002946.2 211238 211768 D Best Blastp Hit: pir||E81176 conserved hypothetical protein NMB0625 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225855|gb|AAF41050.1| (AE002418) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0663 Carbonic anhydrases/acetyltransferases; hypothetical protein 211238..211768 Neisseria gonorrhoeae FA 1090 3281351 YP_207374.1 CDS prfC NC_002946.2 211936 213531 R stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 complement(211936..213531) Neisseria gonorrhoeae FA 1090 3281358 YP_207375.1 CDS hisI NC_002946.2 213638 214033 R PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase complement(213638..214033) Neisseria gonorrhoeae FA 1090 3281419 YP_207376.1 CDS NGO0211 NC_002946.2 214064 214831 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(214064..214831) Neisseria gonorrhoeae FA 1090 3281422 YP_207377.1 CDS NGO0212 NC_002946.2 214844 215581 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(214844..215581) Neisseria gonorrhoeae FA 1090 3281397 YP_207378.1 CDS hisH NC_002946.2 215614 216252 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(215614..216252) Neisseria gonorrhoeae FA 1090 3281167 YP_207379.1 CDS NGO0214 NC_002946.2 216382 217884 R Best Blastp Hit: emb|CAB84122.1| (AL162754) phosphate acyltransferase [Neisseria meningitidis]; COG0280 Phosphotransacetylase; phosphotransacetylase complement(216382..217884) Neisseria gonorrhoeae FA 1090 3281410 YP_207380.1 CDS NGO0215 NC_002946.2 218069 219127 R Best Blastp Hit: emb|CAB84123.1| (AL162754) iron-uptake permease ATP-binding protein [Neisseria meningitidis]; COG1101 ATPase components of various transport; protein FbpC; ABC transporter ATP-binding protein, iron related complement(218069..219127) Neisseria gonorrhoeae FA 1090 3281434 YP_207381.1 CDS NGO0216 NC_002946.2 219148 220677 R Best Blastp Hit: R] COG1081 Uncharacterized permeases; ABC transporter permeas complement(219148..220677) Neisseria gonorrhoeae FA 1090 3281381 YP_207382.1 CDS NGO0217 NC_002946.2 220733 221728 R Best Blastp Hit: gb|AAB63559.1| (U33937) binds iron in a manner similar to transferrin; periplasmic iron-binding protein; Method: conceptual translation supplied by author [Neisseria gonorrhoeae] >gi|1588872|prf||2209379A fbpA gene [Neisseria gonorrhoeae]; COG1840 Thiamine-binding periplasmic proteins; protein FbpA; ABC transporter periplasmic binding protein, iron related complement(220733..221728) Neisseria gonorrhoeae FA 1090 3281438 YP_207383.1 CDS NGO0218 NC_002946.2 222119 222460 R Best Blastp Hit: pir||A81175 hypothetical protein NMB0636 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225865|gb|AAF41059.1| (AE002419) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(222119..222460) Neisseria gonorrhoeae FA 1090 3281454 YP_207384.1 CDS NGO0219 NC_002946.2 222518 223894 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(222518..223894) Neisseria gonorrhoeae FA 1090 3281430 YP_207385.1 CDS NGO0220 NC_002946.2 223913 224782 R Best Blastp Hit: pir||C81175 UTP--glucose-1-phosphate uridylyltransferase NMB0638 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225867|gb|AAF41061.1| (AE002419) UTP--glucose-1-phosphate uridylyltransferase [Neisseria meningitidis MC58]; COG1210 UDP-glucose pyrophosphorylase; UTP-glucose-1-phosphate uridylyltransferase complement(223913..224782) Neisseria gonorrhoeae FA 1090 3281452 YP_207386.1 CDS NGO0221 NC_002946.2 224810 225409 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase complement(224810..225409) Neisseria gonorrhoeae FA 1090 3281441 YP_207387.1 CDS NGO0222 NC_002946.2 225402 225635 R Best Blastp Hit: gb|AAF41063.1| (AE002419) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(225402..225635) Neisseria gonorrhoeae FA 1090 3281455 YP_207388.1 CDS NGO0223 NC_002946.2 225743 226276 R catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase complement(225743..226276) Neisseria gonorrhoeae FA 1090 3281467 YP_207389.1 CDS ntpA NC_002946.2 226378 226836 R converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase complement(226378..226836) Neisseria gonorrhoeae FA 1090 3281460 YP_207390.1 CDS NGO0225 NC_002946.2 227386 229272 D Best Blastp Hit: gb|AAF62313.1| (AE002419) MafB-related protein [Neisseria meningitidis MC58]; MafB1 protein; MafB-like protein 227386..229272 Neisseria gonorrhoeae FA 1090 3281479 YP_207391.1 CDS NGO0226 NC_002946.2 229300 229722 D Best Blastp Hit: pir||C81176 hypothetical protein NMB0648 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225875|gb|AAF41069.1| (AE002419) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 229300..229722 Neisseria gonorrhoeae FA 1090 3281476 YP_207392.1 CDS NGO0227 NC_002946.2 230200 230445 D Best Blastp Hit: emb|CAB84136.1| (AL162754) hypothetical protein NMA0855 [Neisseria meningitidis]; hypothetical protein 230200..230445 Neisseria gonorrhoeae FA 1090 3281474 YP_207393.1 CDS NGO0228 NC_002946.2 230448 230834 D Best Blastp Hit: pir||E81931 hypothetical protein NMA0857 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379573|emb|CAB84138.1| (AL162754) hypothetical protein NMA0857 [Neisseria meningitidis]; hypothetical protein 230448..230834 Neisseria gonorrhoeae FA 1090 3281465 YP_207394.1 CDS NGO0229 NC_002946.2 231055 231444 D Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); hypothetical protein 231055..231444 Neisseria gonorrhoeae FA 1090 3281469 YP_207395.1 CDS NGO0230 NC_002946.2 231484 232941 R Best Blastp Hit: pir||G81931 probable transmembrane potassium transporter NMA0859 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379575|emb|CAB84140.1| (AL162754) transmembrane potassium transporter [Neisseria meningitidis]; COG0168 Potassium uptake system component TrkG; transport protein, potassium complement(231484..232941) Neisseria gonorrhoeae FA 1090 3281492 YP_207396.1 CDS apaH NC_002946.2 232956 233786 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase complement(232956..233786) Neisseria gonorrhoeae FA 1090 3281453 YP_207397.1 CDS NGO0232 NC_002946.2 233863 234252 R Best Blastp Hit: pir||F81174 ribonuclease, probable NMB0662 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225887|gb|AAF41080.1| (AE002420) ribonuclease, [Neisseria meningitidis MC58]; COG0251 translation initiation inhibitor; hypothetical protein complement(233863..234252) Neisseria gonorrhoeae FA 1090 3281362 YP_207398.1 CDS NGO0233 NC_002946.2 234399 234926 R Best Blastp Hit: gb|AAB41581.1| (U52069) outer membrane protein [Neisseria gonorrhoeae]; outer membrane protein complement(234399..234926) Neisseria gonorrhoeae FA 1090 3281494 YP_207399.1 CDS NGO0234 NC_002946.2 235369 236544 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(235369..236544) Neisseria gonorrhoeae FA 1090 3281485 YP_207400.1 CDS NGO0235 NC_002946.2 236601 239072 R Best Blastp Hit: pir||F81172 DNA ligase NMB0666 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225892|gb|AAF41084.1| (AE002421) DNA ligase [Neisseria meningitidis MC58]; COG0272 NAD-dependent DNA ligase (contains BRCT; DNA ligase complement(236601..239072) Neisseria gonorrhoeae FA 1090 3281488 YP_207401.1 CDS NGO0236 NC_002946.2 239206 240492 R Best Blastp Hit: pir||G81172 hypothetical protein NMB0667 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225893|gb|AAF41085.1| (AE002421) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(239206..240492) Neisseria gonorrhoeae FA 1090 3281509 YP_207402.1 CDS NGO0237 NC_002946.2 240686 241258 R Best Blastp Hit: pir||F81932 probable anhydro-N-acetylmuramyl-tripeptide amidase NMA0867 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379582|emb|CAB84147.1| (AL162754) anhydro-N-acetylmuramyl-tripeptide amidase [Neisseria meningitidis]; N-acetyl-anhydromuranmyl-L-alanine amidase complement(240686..241258) Neisseria gonorrhoeae FA 1090 3281496 YP_207403.1 CDS NGO0238 NC_002946.2 241342 242289 D Best Blastp Hit: pir||A81173 conserved hypothetical protein NMB0669 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225895|gb|AAF41087.1| (AE002421) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1559 Uncharacterized BCR, YceG family; hypothetical protein 241342..242289 Neisseria gonorrhoeae FA 1090 3281513 YP_207404.1 CDS tmk NC_002946.2 242398 243018 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 242398..243018 Neisseria gonorrhoeae FA 1090 3281463 YP_207405.1 CDS NGO0240 NC_002946.2 243240 244520 D Best Blastp Hit: pir||A81933 probable malate dehydrogenase (oxaloacetate-decarboxylating) (EC 1.1.1.38) NMA0870 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379585|emb|CAB84150.1| (AL162754) malate oxidoreductase [Neisseria meningitidis]; COG0281 Malic enzyme; malic enzyme, malate dehydrogenase/oxaloacetate-decarboxylating 243240..244520 Neisseria gonorrhoeae FA 1090 3281502 YP_207406.1 CDS NGO0241 NC_002946.2 244633 244836 D Best Blastp Hit: emb|CAB84151.1| (AL162754) hypothetical protein NMA0871 [Neisseria meningitidis]; hypothetical protein 244633..244836 Neisseria gonorrhoeae FA 1090 3281519 YP_207407.1 CDS lpxK NC_002946.2 244922 245953 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 244922..245953 Neisseria gonorrhoeae FA 1090 3281520 YP_207408.1 CDS NGO0243 NC_002946.2 246159 246692 D Best Blastp Hit: pir||G81170 probable periplasmic protein NMA0873 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225900|gb|AAF41091.1| (AE002422) hypothetical protein [Neisseria meningitidis MC58] >gi|7379588|emb|CAB84153.1| (AL162754) periplasmic protein [Neisseria meningitidis]; hypothetical protein 246159..246692 Neisseria gonorrhoeae FA 1090 3281497 YP_207409.1 CDS NGO0244 NC_002946.2 246914 247096 D Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); hypothetical protein 246914..247096 Neisseria gonorrhoeae FA 1090 3281515 YP_207410.1 CDS NGO0245 NC_002946.2 247093 247854 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 247093..247854 Neisseria gonorrhoeae FA 1090 3281505 YP_207411.1 CDS NGO0246 NC_002946.2 247877 248173 D Best Blastp Hit: pir||G81933 hypothetical protein NMA0876 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379591|emb|CAB84156.1| (AL162754) hypothetical protein NMA0876 [Neisseria meningitidis]; hypothetical protein 247877..248173 Neisseria gonorrhoeae FA 1090 3281345 YP_207412.1 CDS NGO0247 NC_002946.2 248228 248392 D Best Blastp Hit: emb|CAB84157.1| (AL162754) hypothetical protein NMA0877 [Neisseria meningitidis]; hypothetical protein 248228..248392 Neisseria gonorrhoeae FA 1090 3281539 YP_207413.1 CDS trpA NC_002946.2 248915 249700 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 248915..249700 Neisseria gonorrhoeae FA 1090 3281525 YP_207414.1 CDS NGO0249 NC_002946.2 249737 250609 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 249737..250609 Neisseria gonorrhoeae FA 1090 3281537 YP_207415.1 CDS NGO0250 NC_002946.2 250669 251280 R Best Blastp Hit: pir||A43857 cryptic protein cnp1 - Neisseria gonorrhoeae >gi|150247|gb|AAA25449.1| (M84111) cryptic protein [Transposon Tn] >gi|246454|gb|AAB21607.1| (S85411) cryptic neisserial protein=cnp1 [Neisseria gonorrhoeae, Peptide, 203 aa]; Cnp1 complement(250669..251280) Neisseria gonorrhoeae FA 1090 3281541 YP_207416.1 CDS NGO0252 NC_002946.2 251643 252029 D Best Blastp Hit: pir||F81934 probable lipoprotein NMA0883 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379598|emb|CAB84163.1| (AL162754) lipoprotein [Neisseria meningitidis]; hypothetical protein 251643..252029 Neisseria gonorrhoeae FA 1090 3281548 YP_207417.1 CDS NGO0253 NC_002946.2 252030 252623 R Best Blastp Hit: emb|CAB72028.1| (AJ391260) transposase [Neisseria meningitidis]; hypothetical protein complement(252030..252623) Neisseria gonorrhoeae FA 1090 3281553 YP_207418.1 CDS NGO0255 NC_002946.2 253334 254368 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 253334..254368 Neisseria gonorrhoeae FA 1090 3281552 YP_207419.1 CDS nusB NC_002946.2 254447 254872 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(254447..254872) Neisseria gonorrhoeae FA 1090 3281560 YP_207420.1 CDS ribH NC_002946.2 254950 255426 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(254950..255426) Neisseria gonorrhoeae FA 1090 3281556 YP_207421.1 CDS NGO0258 NC_002946.2 255473 255796 R Best Blastp Hit: pir||C81172 hypothetical protein NMB0685 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225912|gb|AAF41103.1| (AE002422) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(255473..255796) Neisseria gonorrhoeae FA 1090 3281085 YP_207422.1 CDS rnc NC_002946.2 255967 256686 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 255967..256686 Neisseria gonorrhoeae FA 1090 3281574 YP_207423.1 CDS era NC_002946.2 256721 257656 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 256721..257656 Neisseria gonorrhoeae FA 1090 3281558 YP_207424.1 CDS NGO0261 NC_002946.2 260589 261215 R catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase complement(260589..261215) Neisseria gonorrhoeae FA 1090 3281084 YP_207425.1 CDS greB NC_002946.2 261274 261765 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB complement(261274..261765) Neisseria gonorrhoeae FA 1090 3281575 YP_207426.1 CDS NGO0263 NC_002946.2 261865 263409 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(261865..263409) Neisseria gonorrhoeae FA 1090 3281534 YP_207427.1 CDS NGO0264 NC_002946.2 263603 264100 R Best Blastp Hit: gb|AAF62316.1| (AE002423) colicin V production protein, [Neisseria meningitidis MC58]; COG1286 Uncharacterized membrane protein, required; bacteriocin production protein complement(263603..264100) Neisseria gonorrhoeae FA 1090 3281544 YP_207428.1 CDS NGO0265 NC_002946.2 264093 265133 R Best Blastp Hit: emb|CAA92429.1| (Z68205) tpc [Neisseria gonorrhoeae]; tetrapac protein complement(264093..265133) Neisseria gonorrhoeae FA 1090 3281561 YP_207429.1 CDS NGO0266 NC_002946.2 265147 266421 R Best Blastp Hit: pir||S63583 tetrahydrofolylpolyglutamate synthase (EC 6.3.2.17) / dihydrofolate synthase (EC 6.3.2.12) - Neisseria gonorrhoeae (strain MS11) >gi|1237077|emb|CAA92428.1| (Z68205) folC [Neisseria gonorrhoeae]; COG0285 Folylpolyglutamate synthase; bifunctional folylpolyglutamate synthase/dihydrofolate synthase complement(265147..266421) Neisseria gonorrhoeae FA 1090 3281551 YP_207430.1 CDS NGO0267 NC_002946.2 266452 266892 R Best Blastp Hit: pir||S63582 folI protein - Neisseria gonorrhoeae (strain MS11) >gi|1237076|emb|CAA92427.1| (Z68205) folI [Neisseria gonorrhoeae]; folC transcriptional regulator; FolI complement(266452..266892) Neisseria gonorrhoeae FA 1090 3281570 YP_207431.1 CDS NGO0268 NC_002946.2 266897 267271 R Best Blastp Hit: pir||D81936 hypothetical protein NMA0899 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379612|emb|CAB84177.1| (AL162754) hypothetical protein NMA0899 [Neisseria meningitidis]; hypothetical protein complement(266897..267271) Neisseria gonorrhoeae FA 1090 3281592 YP_207432.1 CDS NGO0269 NC_002946.2 267329 268057 R Best Blastp Hit: pir||E81936 probable amino acid permease ATP-binding protein NMA0900 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379613|emb|CAB84178.1| (AL162754) amino acid permease ATP-binding protein [Neisseria meningitidis]; COG1126 ABC-type polar amino acid transport system; ABC transporter ATP-binding protein, amino acid complement(267329..268057) Neisseria gonorrhoeae FA 1090 3281579 YP_207433.1 CDS NGO0270 NC_002946.2 268099 268554 R hypothetical protein complement(268099..268554) Neisseria gonorrhoeae FA 1090 3281616 YP_207434.1 CDS NGO0271 NC_002946.2 268665 269234 R hypothetical protein complement(268665..269234) Neisseria gonorrhoeae FA 1090 3281589 YP_207435.1 CDS ksgA NC_002946.2 269249 270028 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(269249..270028) Neisseria gonorrhoeae FA 1090 3283045 YP_207436.1 CDS NGO0274 NC_002946.2 271016 272218 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 271016..272218 Neisseria gonorrhoeae FA 1090 3281611 YP_207437.1 CDS NGO0275 NC_002946.2 272294 277075 R Best Blastp Hit: prf||1303333A protease Ig A [Neisseria gonorrhoeae]; IgA-specific metalloendopeptidase complement(272294..277075) Neisseria gonorrhoeae FA 1090 3281612 YP_207438.1 CDS NGO0276 NC_002946.2 277605 279680 D Best Blastp Hit: sp|P51973|COMA_NEIGO competence protein ComA >gi|481875|pir||S39867 competence protein comA - Neisseria gonorrhoeae >gi|913748|gb|AAB32261.1| (S75490) ComA=inner membrane protein [Neisseria gonorrhoeae, MS11, Peptide, 691 aa]; ComA protein 277605..279680 Neisseria gonorrhoeae FA 1090 3281597 YP_207439.1 CDS NGO0277 NC_002946.2 279750 280553 R Best Blastp Hit: sp|Q50985|COML_NEIGO competence lipoprotein ComL precursor >gi|2120876|pir||S71020 peptidoglycan-linked lipoprotein precursor - Neisseria gonorrhoeae >gi|1107833|emb|CAA90076.1| (Z49895) ComL, competence lipoprotein [Neisseria gonorrhoeae] >gi|1588996|prf||2209423A lipoprotein [Neisseria gonorrhoeae]; COG0457 TPR-repeat-containing proteins; ComL complement(279750..280553) Neisseria gonorrhoeae FA 1090 3281625 YP_207440.1 CDS NGO0278 NC_002946.2 280552 281676 D Best Blastp Hit: pir||A81168 ribosomal large chain pseudouridine synthase D NMB0704 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225933|gb|AAF41121.1| (AE002425) ribosomal large subunit pseudouridine synthase D [Neisseria meningitidis MC58]; COG0564 Predicted pseudouridylate synthase 2; protein RluD 280552..281676 Neisseria gonorrhoeae FA 1090 3281614 YP_207441.1 CDS NGO0280 NC_002946.2 282855 283175 R hypothetical protein complement(282855..283175) Neisseria gonorrhoeae FA 1090 3281633 YP_207442.1 CDS NGO0281 NC_002946.2 283231 284010 D Best Blastp Hit: pir||F81937 hypothetical protein NMA0911 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379622|emb|CAB84187.1| (AL162754) hypothetical protein NMA0911 [Neisseria meningitidis]; COG1496 Uncharacterized ACR, YfiH family; hypothetical protein 283231..284010 Neisseria gonorrhoeae FA 1090 3281603 YP_207443.1 CDS NGO0282 NC_002946.2 284062 284541 D Best Blastp Hit: emb|CAB84188.1| (AL162754) lipoprotein [Neisseria meningitidis]; hypothetical protein 284062..284541 Neisseria gonorrhoeae FA 1090 3281623 YP_207444.1 CDS holA NC_002946.2 284543 285541 D required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 284543..285541 Neisseria gonorrhoeae FA 1090 3281638 YP_207445.1 CDS NGO0284 NC_002946.2 285662 286081 D Best Blastp Hit: pir||A81938 probable membrane protein NMA0914 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379625|emb|CAB84190.1| (AL162754) membrane protein [Neisseria meningitidis] >gi|7413439|gb|AAF62317.1| (AE002425) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 285662..286081 Neisseria gonorrhoeae FA 1090 3281629 YP_207446.1 CDS NGO0285 NC_002946.2 286106 286672 D Best Blastp Hit: gb|AAF62318.1| (AE002425) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 286106..286672 Neisseria gonorrhoeae FA 1090 3281607 YP_207447.1 CDS NGO0286 NC_002946.2 286763 287647 R Best Blastp Hit: pir||F81168 conserved hypothetical protein NMB0711 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225938|gb|AAF41126.1| (AE002425) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1561 Uncharacterized stress-induced protein, YicC; hypothetical protein complement(286763..287647) Neisseria gonorrhoeae FA 1090 3281649 YP_207448.1 CDS NGO0288 NC_002946.2 288380 289252 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(288380..289252) Neisseria gonorrhoeae FA 1090 3281630 YP_207449.1 CDS lnt NC_002946.2 289507 291045 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(289507..291045) Neisseria gonorrhoeae FA 1090 3281662 YP_207450.1 CDS NGO0290 NC_002946.2 291115 291855 R Best Blastp Hit: gb|AAG05246.1|AE004611_11 (AE004611) conserved hypothetical protein [Pseudomonas aeruginosa]; hypothetical protein complement(291115..291855) Neisseria gonorrhoeae FA 1090 3281652 YP_207451.1 CDS NGO0291 NC_002946.2 292059 293780 D the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 292059..293780 Neisseria gonorrhoeae FA 1090 3281641 YP_207452.1 CDS NGO0292 NC_002946.2 293777 294244 R Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); hypothetical protein complement(293777..294244) Neisseria gonorrhoeae FA 1090 3281661 YP_207453.1 CDS hemH NC_002946.2 294435 295445 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(294435..295445) Neisseria gonorrhoeae FA 1090 3281650 YP_207454.1 CDS tgt NC_002946.2 295527 296642 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(295527..296642) Neisseria gonorrhoeae FA 1090 3281620 YP_207455.1 CDS thrS NC_002946.2 296950 298863 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 296950..298863 Neisseria gonorrhoeae FA 1090 3281668 YP_207456.1 CDS infC NC_002946.2 298881 299402 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 298881..299402 Neisseria gonorrhoeae FA 1090 3281674 YP_207457.1 CDS rpmI NC_002946.2 299549 299746 D Best Blastp Hit: pir||E81165 50S ribosomal protein L35 NMB0722 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225949|gb|AAF41135.1| (AE002427) 50S ribosomal protein L35 [Neisseria meningitidis MC58] >gi|7379636|emb|CAB84203.1| (AL162754) 50S ribosomal protein L35 [Neisseria meningitidis]; COG0291 Ribosomal protein L35; 50S ribosomal protein L35 299549..299746 Neisseria gonorrhoeae FA 1090 3281658 YP_207458.1 CDS rplT NC_002946.2 299759 300118 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 299759..300118 Neisseria gonorrhoeae FA 1090 3281676 YP_207459.2 CDS pheS NC_002946.2 300359 301348 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 300359..301348 Neisseria gonorrhoeae FA 1090 3281671 YP_207460.1 CDS NGO0300 NC_002946.2 301365 301778 D Best Blastp Hit: emb|CAB59896.1| (AJ238948) very short patch repair endonuclease [Neisseria meningitidis]; very-short-patch-repair endonuclease 301365..301778 Neisseria gonorrhoeae FA 1090 3281315 YP_207461.1 CDS NGO0302 NC_002946.2 302132 302377 D hypothetical protein 302132..302377 Neisseria gonorrhoeae FA 1090 3281680 YP_207462.1 CDS NGO0303 NC_002946.2 302383 303132 D Best Blastp Hit: gb|AAD19409.1| (AF102543) unknown [Zymomonas mobilis]; hypothetical protein 302383..303132 Neisseria gonorrhoeae FA 1090 3281684 YP_207463.1 CDS pheT NC_002946.2 303223 305586 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 303223..305586 Neisseria gonorrhoeae FA 1090 3281687 YP_207464.1 CDS ihfA NC_002946.2 305660 305962 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 305660..305962 Neisseria gonorrhoeae FA 1090 3281528 YP_207465.1 CDS NGO0306 NC_002946.2 305946 306254 D Best Blastp Hit: emb|CAB84210.1| (AL162754) hypothetical protein NMA0939 [Neisseria meningitidis]; hypothetical protein 305946..306254 Neisseria gonorrhoeae FA 1090 3281604 YP_207466.1 CDS fxsA NC_002946.2 306430 306915 D F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein 306430..306915 Neisseria gonorrhoeae FA 1090 3281690 YP_207467.1 CDS NGO0308 NC_002946.2 307549 308850 D Best Blastp Hit: pir||D81164 adenosylmethionine-8-amino-7-oxononanoate aminotransferase NMB0732 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225960|gb|AAF41145.1| (AE002428) adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Neisseria meningitidis MC58]; COG0161 Adenosylmethionine-8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 307549..308850 Neisseria gonorrhoeae FA 1090 3281697 YP_207468.1 CDS bioD NC_002946.2 308847 309494 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 308847..309494 Neisseria gonorrhoeae FA 1090 3281703 YP_207469.1 CDS NGO0310 NC_002946.2 309428 309985 D Best Blastp Hit: pir||H81940 hypothetical protein NMA0944 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379648|emb|CAB84215.1| (AL162754) hypothetical protein NMA0944 [Neisseria meningitidis]; hypothetical protein 309428..309985 Neisseria gonorrhoeae FA 1090 3281581 YP_207470.1 CDS NGO0311 NC_002946.2 310109 310516 D hypothetical protein 310109..310516 Neisseria gonorrhoeae FA 1090 3281699 YP_207471.1 CDS ubiA NC_002946.2 310506 311396 D catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 310506..311396 Neisseria gonorrhoeae FA 1090 3281708 YP_207472.1 CDS NGO0313 NC_002946.2 311581 312030 D Best Blastp Hit: pir||B81941 probable regulatory protein NMA0946 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379650|emb|CAB84217.1| (AL162754) regulatory protein [Neisseria meningitidis]; COG1762 Phosphotransferase system; two-component system transcriptional response regulator 311581..312030 Neisseria gonorrhoeae FA 1090 3281731 YP_207473.1 CDS NGO0314 NC_002946.2 312034 312996 D catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 312034..312996 Neisseria gonorrhoeae FA 1090 3281732 YP_207474.1 CDS NGO0315 NC_002946.2 312977 313831 D Best Blastp Hit: pir||D81941 hypothetical protein NMA0948 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379652|emb|CAB84219.1| (AL162754) hypothetical protein NMA0948 [Neisseria meningitidis]; COG1660 Uncharacterized BCR, YhbJ/UPF0042 family; hypothetical protein 312977..313831 Neisseria gonorrhoeae FA 1090 3281722 YP_207475.1 CDS rbgA NC_002946.2 313912 314853 D essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 313912..314853 Neisseria gonorrhoeae FA 1090 3281727 YP_207476.1 CDS NGO0317 NC_002946.2 314954 315556 D Best Blastp Hit: pir||F81941 hypothetical protein NMA0951 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379654|emb|CAB84221.1| (AL162754) hypothetical protein NMA0951 [Neisseria meningitidis]; COG1386 Uncharacterized ACR; hypothetical protein 314954..315556 Neisseria gonorrhoeae FA 1090 3281739 YP_207477.1 CDS NGO0318 NC_002946.2 315740 317413 D Best Blastp Hit: pir||D81165 DNA repair protein RecN NMB0740 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225968|gb|AAF41153.1| (AE002428) DNA repair protein RecN [Neisseria meningitidis MC58]; COG0497 ATPases involved in DNA repair; hypothetical protein 315740..317413 Neisseria gonorrhoeae FA 1090 3281718 YP_207478.1 CDS NGO0319 NC_002946.2 318158 319777 R Best Blastp Hit: emb|CAB84224.1| (AL162754) hypothetical protein NMA0954 [Neisseria meningitidis]; COG0500 SAM-dependent methyltransferases; hypothetical protein complement(318158..319777) Neisseria gonorrhoeae FA 1090 3281723 YP_207479.1 CDS NGO0320 NC_002946.2 319873 320265 D Best Blastp Hit: pir||B81942 hypothetical protein NMA0955 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379658|emb|CAB84225.1| (AL162754) hypothetical protein NMA0955 [Neisseria meningitidis]; hypothetical protein 319873..320265 Neisseria gonorrhoeae FA 1090 3281733 YP_207480.1 CDS ubiE NC_002946.2 320308 321045 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 320308..321045 Neisseria gonorrhoeae FA 1090 3281747 YP_207481.1 CDS NGO0322 NC_002946.2 321265 321744 D Best Blastp Hit: pir||G81162 hypothetical protein NMB0744 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225973|gb|AAF41157.1| (AE002429) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 321265..321744 Neisseria gonorrhoeae FA 1090 3281749 YP_207482.1 CDS NGO0323 NC_002946.2 321872 322366 R Best Blastp Hit: H]COG08017, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(321872..322366) Neisseria gonorrhoeae FA 1090 3281734 YP_207483.1 CDS NGO0324 NC_002946.2 322376 322750 R Best Blastp Hit: pir||A81163 conserved hypothetical protein NMB0746 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225975|gb|AAF41159.1| (AE002429) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(322376..322750) Neisseria gonorrhoeae FA 1090 3281761 YP_207484.1 CDS NGO0326 NC_002946.2 323455 323748 R Best Blastp Hit: pir||C81163 host factor-I NMB0748 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225977|gb|AAF41161.1| (AE002429) host factor-I [Neisseria meningitidis MC58] >gi|7379664|emb|CAB84231.1| (AL162754) regulator [Neisseria meningitidis]; COG1923 Uncharacterized ACR, host factor I protein; hypothetical protein complement(323455..323748) Neisseria gonorrhoeae FA 1090 3283044 YP_207485.1 CDS NGO0327 NC_002946.2 323877 324815 R Best Blastp Hit: gb|AAD38860.1|AF156692_1 (AF156692) penicillin-binding protein 4 [Neisseria gonorrhoeae]; COG1686 D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine-endopeptidase complement(323877..324815) Neisseria gonorrhoeae FA 1090 3283042 YP_207486.1 CDS NGO0328 NC_002946.2 325073 325576 D Best Blastp Hit: pir||B81943 hypothetical protein NMA0963 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379666|emb|CAB84233.1| (AL162754) hypothetical protein NMA0963 [Neisseria meningitidis]; COG12 25 Peroxiredoxins; hypothetical protein 325073..325576 Neisseria gonorrhoeae FA 1090 3283043 YP_207487.1 CDS NGO0329 NC_002946.2 325628 326503 D Best Blastp Hit: pir||F81163 integrase/recombinase XerD NMB0751 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225980|gb|AAF41164.1| (AE002429) integrase/recombinase XerD [Neisseria meningitidis MC58]; COG0582 Integrase; hypothetical protein 325628..326503 Neisseria gonorrhoeae FA 1090 3283041 YP_207488.1 CDS NGO0330 NC_002946.2 326609 326962 R Best Blastp Hit: >pir||B81163 conserved hypothetical protein NMB0747 [imported] - Neisseria meningitidis (group B strain MD58) gb|AAF41160.1| (AE002429) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(326609..326962) Neisseria gonorrhoeae FA 1090 3283040 YP_207489.1 CDS NGO0331 NC_002946.2 327041 327274 D Best Blastp Hit: >pir||B81163 conserved hypothetical protein NMB0747 [imported] - Neisseria meningitidis (group B strain MD58) gb|AAF41160.1| (AE002429) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 327041..327274 Neisseria gonorrhoeae FA 1090 3283039 YP_207490.1 CDS NGO0332 NC_002946.2 327646 328509 R Best Blastp Hit: pir||F81943 probable dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) NMA0967 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379670|emb|CAB84237.1| (AL162754) dTDP-4-dehydrorhamnose reductase [Neisseria meningitidis]; COG1091 dTDP-4-dehydrorhamnose reductase; reductase complement(327646..328509) Neisseria gonorrhoeae FA 1090 3281736 YP_207491.1 CDS hemH NC_002946.2 328606 329565 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 328606..329565 Neisseria gonorrhoeae FA 1090 3281760 YP_207492.1 CDS NGO0335 NC_002946.2 329799 331922 D Best Blastp Hit: pir||C81161 polyribonucleotide nucleotidyltransferase NMB0758 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225988|gb|AAF41171.1| (AE002430) polyribonucleotide nucleotidyltransferase [Neisseria meningitidis MC58]; COG1185 Polyribonucleotide nucleotidyltransferase; polynucleotide phosphorylase 329799..331922 Neisseria gonorrhoeae FA 1090 3283038 YP_207493.1 CDS NGO0336 NC_002946.2 331995 332663 R Best Blastp Hit: pir||D81161 conserved hypothetical protein NMB0759 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225989|gb|AAF41172.1| (AE002430) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(331995..332663) Neisseria gonorrhoeae FA 1090 3281777 YP_207494.1 CDS NGO0337 NC_002946.2 332660 332974 R Best Blastp Hit: emb|CAB84241.1| (AL162754) lipoprotein [Neisseria meningitidis]; hypothetical protein complement(332660..332974) Neisseria gonorrhoeae FA 1090 3281725 YP_207495.1 CDS dapF NC_002946.2 333111 333962 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 333111..333962 Neisseria gonorrhoeae FA 1090 3281778 YP_207496.1 CDS NGO0339 NC_002946.2 333959 334564 D Best Blastp Hit: possibly phase variable - 8T residue homopolymer repeat in the coding sequence (ON); hypothetical protein 333959..334564 Neisseria gonorrhoeae FA 1090 3281751 YP_207497.1 CDS NGO0340 NC_002946.2 334760 335692 D Best Blastp Hit: confirmed inframe stop; cysteine synthase/cystathionine beta-synthase 334760..335692 Neisseria gonorrhoeae FA 1090 3281741 YP_207498.1 CDS NGO0342 NC_002946.2 337103 337339 D Best Blastp Hit: pir||T30271 surface protein - fluke (Schistosoma mansoni) (fragment) >gi|501209|gb|AAA73556.1| (M99494) surface protein [Schistosoma mansoni]; hypothetical protein 337103..337339 Neisseria gonorrhoeae FA 1090 3281770 YP_207499.1 CDS NGO0343 NC_002946.2 337539 338558 R Best Blastp Hit: gb|AAF41178.1| (AE002430) signal peptidase I [Neisseria meningitidis MC58]; COG0681 Signal peptidase I; signal peptidase I complement(337539..338558) Neisseria gonorrhoeae FA 1090 3281755 YP_207500.1 CDS NGO0344 NC_002946.2 338704 340497 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(338704..340497) Neisseria gonorrhoeae FA 1090 3281791 YP_207501.1 CDS NGO0345 NC_002946.2 340639 341340 R Best Blastp Hit: pir||D81159 5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase NMB0767 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225998|gb|AAF41180.1| (AE002431) 5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase [Neisseria meningitidis MC58]; COG0775 Nucleoside phosphorylase; nucleoside phosphorylase complement(340639..341340) Neisseria gonorrhoeae FA 1090 3281177 YP_207502.1 CDS NGO0346 NC_002946.2 341526 342638 D Best Blastp Hit: pir||B81945 probable pilus retraction protein NMA0979 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379682|emb|CAB84249.1| (AL162754) pilus retraction protein [Neisseria meningitidis]; COG0630 Predicted ATPases involved in pili; twitching motility-like protein 341526..342638 Neisseria gonorrhoeae FA 1090 3283037 YP_207503.1 CDS NGO0347 NC_002946.2 342672 343649 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 342672..343649 Neisseria gonorrhoeae FA 1090 3281191 YP_207504.1 CDS NGO0348 NC_002946.2 343653 344003 D Best Blastp Hit: pir||D81945 probable pilus biogenesis protein NMA0981 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379684|emb|CAB84251.1| (AL162754) pilus biogenesis protein [Neisseria meningitidis]; type 4 pilus biogenesis protein 343653..344003 Neisseria gonorrhoeae FA 1090 3281205 YP_207505.1 CDS NGO0349 NC_002946.2 344008 344787 D Best Blastp Hit: pir||E81945 hypothetical protein NMA0982 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379685|emb|CAB84252.1| (AL162754) hypothetical protein NMA0982 [Neisseria meningitidis]; COG0084 Predicted hydrolases of PHP superfamily; hypothetical protein 344008..344787 Neisseria gonorrhoeae FA 1090 3281194 YP_207506.1 CDS NGO0350 NC_002946.2 344813 345028 D Best Blastp Hit: gb|AAF41185.1| (AE002431) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 344813..345028 Neisseria gonorrhoeae FA 1090 3281211 YP_207507.1 CDS NGO0351 NC_002946.2 345129 345440 D Best Blastp Hit: pir||B81160 conserved hypothetical protein NMB0773 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226004|gb|AAF41186.1| (AE002431) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379687|emb|CAB84254.1| (AL162754) hypothetical protein NMA0984 [Neisseria meningitidis]; COG0278 Glutaredoxin-related proteins; glutaredoxin-like protein GrlA 345129..345440 Neisseria gonorrhoeae FA 1090 3281239 YP_207508.1 CDS NGO0352 NC_002946.2 345440 345556 D Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); hypothetical protein 345440..345556 Neisseria gonorrhoeae FA 1090 3281226 YP_207509.1 CDS upp NC_002946.2 345546 346172 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 345546..346172 Neisseria gonorrhoeae FA 1090 3281240 YP_207510.1 CDS NGO0354 NC_002946.2 346195 346515 D Best Blastp Hit: pir||D81160 hypothetical protein NMB0775 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226006|gb|AAF41188.1| (AE002431) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 346195..346515 Neisseria gonorrhoeae FA 1090 3281257 YP_207511.1 CDS NGO0355 NC_002946.2 346735 347331 D Best Blastp Hit: gi|10803654 ISH4 transposase [Halobacterium sp. NRC-1] >gi|7484109|pir||T08324 probable transposase - Halobacterium sp. (strain NRC-1) insertion sequence ISH4 plasmid pNRC100 >gi|2822385|gb|AAC82891.1| (AF016485) ISH4 transposase [Halobacterium sp. NRC-1] >gi|10580476|gb|AAG19350.1| (AE005029) Vng0918h [Halobacterium sp. NRC-1]; hypothetical protein 346735..347331 Neisseria gonorrhoeae FA 1090 3283036 YP_207512.1 CDS NGO0356 NC_002946.2 347355 348179 D Best Blastp Hit: sp|Q07605|T4BA_BACCO restriction enzyme BGCI alpha subunit [includes: adenine-specific methyltransferase activity ] >gi|1075788|pir||A53125 restriction enzyme BcgI alpha chain - Bacillus coagulans >gi|304140|gb|AAA16626.1| (L17341) restriction endonuclease alpha subunit [Bacillus coagulans]; COG0286 Type I restriction-modification system; hypothetical protein 347355..348179 Neisseria gonorrhoeae FA 1090 3283035 YP_207513.1 CDS NGO0357 NC_002946.2 348179 349147 D Best Blastp Hit: sp|Q07606|T4BB_BACCO restriction enzyme BGCI beta subunit >gi|1075789|pir||B53125 restriction enzyme BcgI beta chain - Bacillus coagulans >gi|304141|gb|AAA16627.1| (L17341) restriction endonuclease beta subunit [Bacillus coagulans]; hypothetical protein 348179..349147 Neisseria gonorrhoeae FA 1090 3283034 YP_207514.1 CDS NGO0358 NC_002946.2 349426 349851 D Best Blastp Hit: gb|AAD13642.1| (AF003941) Gly1ORF1 [Neisseria gonorrhoeae]; hypothetical protein 349426..349851 Neisseria gonorrhoeae FA 1090 3283033 YP_207515.1 CDS hemD NC_002946.2 349869 350633 D catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 349869..350633 Neisseria gonorrhoeae FA 1090 3283032 YP_207516.1 CDS NGO0360 NC_002946.2 350705 351979 D Best Blastp Hit: pir||G81160 uroporphyrin-III C-methyltransferase HemX, probable NMB0778 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226009|gb|AAF41191.1| (AE002431) uroporphyrin-III C-methyltransferase HemX, [Neisseria meningitidis MC58]; hypothetical protein 350705..351979 Neisseria gonorrhoeae FA 1090 3283031 YP_207517.1 CDS NGO0361 NC_002946.2 351976 353193 D Best Blastp Hit: pir||E81946 hypothetical protein NMA0990 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379693|emb|CAB84260.1| (AL162754) hypothetical protein NMA0990 [Neisseria meningitidis]; hypothetical protein 351976..353193 Neisseria gonorrhoeae FA 1090 3283029 YP_207518.1 CDS hemE NC_002946.2 353268 354332 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 353268..354332 Neisseria gonorrhoeae FA 1090 3283028 YP_207519.1 CDS NGO0363 NC_002946.2 354395 356284 R Best Blastp Hit: pir||B55225 stress-sensitive restriction system protein 2 - Corynebacterium glutamicum (ATCC 13032) >gi|549844|gb|AAC00044.1| (U13922) This orf may encode a typeI or typeIII restriction endonuclease which is stress-sensitive and ATP-dependent. It contains a typical ATP binding region (Walker motif) [Corynebacterium glutamicum]; stress-sensitive restriction system protein complement(354395..356284) Neisseria gonorrhoeae FA 1090 3283030 YP_207520.1 CDS NGO0364 NC_002946.2 356285 357322 R Best Blastp Hit: pir||T10166 restriction endonuclease (EC 3.1.21.-) NgoVII - Neisseria gonorrhoeae >gi|1165246|gb|AAA86271.1| (U43736) R.NgoVII [Neisseria gonorrhoeae]; restriction endonuclease R.NgoVII complement(356285..357322) Neisseria gonorrhoeae FA 1090 3283027 YP_207521.1 CDS NGO0365 NC_002946.2 357319 358443 R Best Blastp Hit: pir||T10165 site-specific DNA-methyltransferase (cytosine-specific) (EC 2.1.1.73) NgoVII - Neisseria gonorrhoeae >gi|1165245|gb|AAA86270.1| (U43736) M.NgoVII [Neisseria gonorrhoeae]; COG0270 Site-specific DNA methylase dcm; site-specific DNA-methyltransferase M.NgoVII complement(357319..358443) Neisseria gonorrhoeae FA 1090 3283023 YP_207522.1 CDS NGO0366 NC_002946.2 358468 358725 D Best Blastp Hit: possibly phase variable - 22 tandem repeats of AACGC in the coding sequence (ON); hypothetical protein 358468..358725 Neisseria gonorrhoeae FA 1090 3283026 YP_207523.1 CDS NGO0367 NC_002946.2 358830 360209 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 358830..360209 Neisseria gonorrhoeae FA 1090 3283025 YP_207524.1 CDS NGO0368 NC_002946.2 360484 360864 R Best Blastp Hit: pir||D81158 conserved hypothetical protein NMB0783 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226015|gb|AAF41196.1| (AE002432) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(360484..360864) Neisseria gonorrhoeae FA 1090 3283024 YP_207525.1 CDS NGO0369 NC_002946.2 361088 361531 R Best Blastp Hit: emb|CAB84264.1| (AL162754) periplasmic protein [Neisseria meningitidis]; COG0607 Rhodanese-related sulfurtransferases; hypothetical protein complement(361088..361531) Neisseria gonorrhoeae FA 1090 3282004 YP_207526.1 CDS NGO0370 NC_002946.2 361486 365088 R Best Blastp Hit: pir||F81158 exodeoxyribonuclease V 135 KD polypeptide NMB0785 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226017|gb|AAF41198.1| (AE002432) exodeoxyribonuclease V 135 KD polypeptide [Neisseria meningitidis MC58]; COG1074 ATP-dependent exo DNAse (exonuclease V); exodeoxyribonuclease complement(361486..365088) Neisseria gonorrhoeae FA 1090 3282190 YP_207527.1 CDS NGO0371 NC_002946.2 365165 366073 R Best Blastp Hit: pir||G81158 conserved hypothetical protein NMB0786 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226018|gb|AAF41199.1| (AE002432) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(365165..366073) Neisseria gonorrhoeae FA 1090 3282189 YP_207528.1 CDS NGO0372 NC_002946.2 366358 367185 D Best Blastp Hit: pir||H81158 amino acid ABC transporter periplasmic amino acid-binding protein NMB0787 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226019|gb|AAF41200.1| (AE002432) amino acid ABC transporter periplasmic amino acid-binding protein [Neisseria meningitidis MC58]; COG0834 Periplasmic amino acid binding proteins; ABC transporter periplasmic binding protein, amino acid 366358..367185 Neisseria gonorrhoeae FA 1090 3283022 YP_207529.1 CDS NGO0373 NC_002946.2 367175 367891 D Best Blastp Hit: pir||E81947 probable amino acid permease integral membrane protein NMA0999 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379701|emb|CAB84268.1| (AL162754) amino acid permease integral membrane protein [Neisseria meningitidis]; COG0765 Amino acid ABC transporter permease; ABC transporter permease, amino acid 367175..367891 Neisseria gonorrhoeae FA 1090 3282174 YP_207530.1 CDS NGO0374 NC_002946.2 367901 368656 D Best Blastp Hit: pir||F81947 probable amino acid permease ATP-binding protein NMA1000 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379702|emb|CAB84269.1| (AL162754) amino acid permease ATP-binding protein [Neisseria meningitidis]; COG1126 ABC-type polar amino acid transport system; ABC transporter ATP-binding protein, amino acid 367901..368656 Neisseria gonorrhoeae FA 1090 3282185 YP_207531.1 CDS NGO0375 NC_002946.2 368712 370094 R Best Blastp Hit: sp|P40390|PGMU_NEIGO phosphoglucomutase (glucose phosphomutase) (PGM) >gi|1073189|pir||A53614 phosphoglucomutase (EC 5.4.2.2) - Neisseria gonorrhoeae (strain 1291) >gi|414527|gb|AAA20588.1| (U02489) phosphoglucomutase [Neisseria gonorrhoeae] >gi|452116|gb|AAA20399.1| (L23426) phosphoglucomutase [Neisseria gonorrhoeae]; COG1109 Phosphomannomutase; protein Pgm; phosphoglucomutase complement(368712..370094) Neisseria gonorrhoeae FA 1090 3281907 YP_207532.1 CDS NGO0376 NC_002946.2 370262 370771 R Best Blastp Hit: pir||F81156 peptidylprolyl isomerase (EC 5.2.1.8) B NMA1002 [similarity] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226024|gb|AAF41204.1| (AE002433) peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis MC58] >gi|7379704|emb|CAB84271.1| (AL162754) peptidyl-prolyl cis-trans isomerase B [Neisseria meningitidis]; COG0652 Peptidyl-prolyl cis-trans isomerase; peptidyl-prolyl cis-trans isomerase B complement(370262..370771) Neisseria gonorrhoeae FA 1090 3281821 YP_207533.1 CDS NGO0377 NC_002946.2 370891 372306 R Best Blastp Hit: pir||G81156 transporter NadC family NMB0792 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226025|gb|AAF41205.1| (AE002433) transporter NadC family [Neisseria meningitidis MC58]; COG0471 Cation transporters; transporter complement(370891..372306) Neisseria gonorrhoeae FA 1090 3281910 YP_207534.1 CDS NGO0378 NC_002946.2 372535 372897 R Best Blastp Hit: pir||A81157 hypothetical protein NMB0794 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226027|gb|AAF41207.1| (AE002433) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(372535..372897) Neisseria gonorrhoeae FA 1090 3281961 YP_207535.1 CDS NGO0379 NC_002946.2 373161 373739 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(373161..373739) Neisseria gonorrhoeae FA 1090 3282007 YP_207536.1 CDS NGO0380 NC_002946.2 373792 374070 R Best Blastp Hit: sp|Q9JRC2|YA05_NEIMA hypothetical protein NMA1005/NMB0796 >gi|7226029|gb|AAF41209.1| (AE002433) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379707|emb|CAB84274.1| (AL162754) hypothetical protein NMA1005 [Neisseria meningitidis]; hypothetical protein complement(373792..374070) Neisseria gonorrhoeae FA 1090 3282112 YP_207537.1 CDS NGO0381 NC_002946.2 374063 374500 R Best Blastp Hit: pir||D81157 conserved hypothetical protein NMB0797 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226030|gb|AAF41210.1| (AE002433) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(374063..374500) Neisseria gonorrhoeae FA 1090 3282153 YP_207538.1 CDS NGO0382 NC_002946.2 374716 376683 R Best Blastp Hit: pir||E81157 cell division protein FtsH NMB0798 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226031|gb|AAF41211.1| (AE002433) cell division protein FtsH [Neisseria meningitidis MC58]; COG0465 ATP-dependent Zn proteases; hypothetical protein complement(374716..376683) Neisseria gonorrhoeae FA 1090 3282447 YP_207539.1 CDS NGO0383 NC_002946.2 376747 377367 R Best Blastp Hit: pir||F81157 cell division protein FtsJ NMB0799 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226032|gb|AAF41212.1| (AE002433) cell division protein FtsJ [Neisseria meningitidis MC58] >gi|7379710|emb|CAB84277.1| (AL162754) cell division protein [Neisseria meningitidis]; COG0293 Methyltranferase FtsJ involved in cell; hypothetical protein complement(376747..377367) Neisseria gonorrhoeae FA 1090 3282537 YP_207540.1 CDS NGO0384 NC_002946.2 377477 377761 D Best Blastp Hit: emb|CAB84278.1| (AL162754) hypothetical protein NMA1009 [Neisseria meningitidis]; COG1534 Predicted RNA-binding protein containing KH; hypothetical protein 377477..377761 Neisseria gonorrhoeae FA 1090 3282564 YP_207541.1 CDS NGO0385 NC_002946.2 377930 378946 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 377930..378946 Neisseria gonorrhoeae FA 1090 3281079 YP_207542.1 CDS NGO0386 NC_002946.2 379010 380167 R Best Blastp Hit: pir||A81158 cystathionine beta-lyase (EC 4.4.1.8) NMB0802 [similarity] - Neisseria meningitidis (group B strain MD58) >gi|7226035|gb|AAF41215.1| (AE002433) cystathionine gamma-synthase [Neisseria meningitidis MC58]; COG0626 Cystathionine beta-lyases/cystathionine; lyase complement(379010..380167) Neisseria gonorrhoeae FA 1090 3281083 YP_207543.1 CDS NGO0387 NC_002946.2 380370 381143 D similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; GTP cyclohydrolase 380370..381143 Neisseria gonorrhoeae FA 1090 3282560 YP_207544.1 CDS NGO0388 NC_002946.2 381340 382005 D Best Blastp Hit: pir||C81155 NAD(P)H nitroreductase, probable NMB0804 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226038|gb|AAF41217.1| (AE002434) NAD(P)H nitroreductase, [Neisseria meningitidis MC58]; COG0778 Nitroreductases; oxidoreductase, NAD(P)H-flavin 381340..382005 Neisseria gonorrhoeae FA 1090 3283020 YP_207545.1 CDS NGO0389 NC_002946.2 382060 382818 R Best Blastp Hit: pir||E81155 conserved hypothetical protein NMB0806 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226040|gb|AAF41219.1| (AE002434) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1187 Predicted pseudouridylate synthase 1; hypothetical protein complement(382060..382818) Neisseria gonorrhoeae FA 1090 3283021 YP_207546.1 CDS ppnK NC_002946.2 382843 383733 R catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase complement(382843..383733) Neisseria gonorrhoeae FA 1090 3283019 YP_207547.1 CDS NGO0391 NC_002946.2 383753 384319 R Best Blastp Hit: pir||G81155 hypothetical protein NMB0808 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226042|gb|AAF41221.1| (AE002434) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(383753..384319) Neisseria gonorrhoeae FA 1090 3283018 YP_207548.1 CDS NGO0392 NC_002946.2 384369 385145 R Best Blastp Hit: pir||A81950 hypothetical protein NMA1019 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379721|emb|CAB84288.1| (AL162754) hypothetical protein NMA1019 [Neisseria meningitidis]; COG0451 Nucleoside-diphosphate-sugar epimerases; hypothetical protein complement(384369..385145) Neisseria gonorrhoeae FA 1090 3283017 YP_207549.1 CDS NGO0393 NC_002946.2 385200 385850 R Best Blastp Hit: gb|AAF41223.1| (AE002434) transcriptional regulator, TetR family [Neisseria meningitidis MC58]; COG1309 Transcriptional regulators, AcrR family; TetR family transcriptional regulator complement(385200..385850) Neisseria gonorrhoeae FA 1090 3283016 YP_207550.1 CDS murB NC_002946.2 385862 386902 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(385862..386902) Neisseria gonorrhoeae FA 1090 3283015 YP_207551.1 CDS NGO0395 NC_002946.2 386946 388325 R NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein complement(386946..388325) Neisseria gonorrhoeae FA 1090 3283014 YP_207552.1 CDS NGO0396 NC_002946.2 388382 388570 D Best Blastp Hit: gb|AAF41226.1| (AE002434) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 388382..388570 Neisseria gonorrhoeae FA 1090 3283013 YP_207553.1 CDS hisZ NC_002946.2 388662 389813 D May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase 388662..389813 Neisseria gonorrhoeae FA 1090 3283012 YP_207554.1 CDS NGO0398 NC_002946.2 389912 391216 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 389912..391216 Neisseria gonorrhoeae FA 1090 3283011 YP_207555.1 CDS NGO0399 NC_002946.2 391452 392291 R metalloprotease; heat shock protein HtpX complement(391452..392291) Neisseria gonorrhoeae FA 1090 3283010 YP_207556.1 CDS adk NC_002946.2 392506 393153 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 392506..393153 Neisseria gonorrhoeae FA 1090 3283009 YP_207557.1 CDS NGO0401 NC_002946.2 393677 394417 D OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 393677..394417 Neisseria gonorrhoeae FA 1090 3283006 YP_207558.1 CDS NGO0402 NC_002946.2 394473 395435 D Best Blastp Hit: gb|AAF41238.1| (AE002435) ADP-heptose synthase, [Neisseria meningitidis MC58]; COG0524 Sugar kinases, ribokinase; sugar kinase / ADP-heptose synthase 394473..395435 Neisseria gonorrhoeae FA 1090 3283008 YP_207559.1 CDS NGO0403 NC_002946.2 395499 396503 D Best Blastp Hit: gb|AAA79173.1| (L07845) ADP-L-glycero-D-mannoheptose epimerase [Neisseria gonorrhoeae]; COG0451 Nucleoside-diphosphate-sugar epimerases; ADP-L-glycero-D-manno-heptose-6-epimerase 395499..396503 Neisseria gonorrhoeae FA 1090 3283007 YP_207560.1 CDS NGO0404 NC_002946.2 396578 398122 D Best Blastp Hit: pir||F81152 type I restriction enzyme EcoR124II M protein NMB0829 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226064|gb|AAF41241.1| (AE002436) type I restriction enzyme EcoR124II M protein [Neisseria meningitidis MC58]; COG0286 Type I restriction-modification system; type I restriction-modification system methyltransferase 396578..398122 Neisseria gonorrhoeae FA 1090 3283005 YP_207561.1 CDS dinD NC_002946.2 398238 399089 D Best Blastp Hit: pir||G65165 DNA-damage-inducible protein d - Escherichia coli >gi|290495|gb|AAA61998.1| (L10328) o278 [Escherichia coli] >gi|1790076|gb|AAC76669.1| (AE000441) DNA-damage-inducible protein [Escherichia coli]; DNA-damage-inducible protein D 398238..399089 Neisseria gonorrhoeae FA 1090 3283004 YP_207562.1 CDS NGO0407 NC_002946.2 400709 403807 D Best Blastp Hit: gb|AAF41246.1| (AE002436) type I restriction enzyme EcoR124II R protein, [Neisseria meningitidis MC58]; COG0610 Restriction enzymes type I helicase subunits; type I site-specific deoxyribonuclease 400709..403807 Neisseria gonorrhoeae FA 1090 3282183 YP_207563.1 CDS NGO0408 NC_002946.2 403847 406138 R Best Blastp Hit: pir||D81153 ATP-dependent Clp proteinase, ATP-binding chain ClpA NMB0836 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226070|gb|AAF41247.1| (AE002436) ATP-dependent Clp protease, ATP-binding subunit ClpA [Neisseria meningitidis MC58]; COG0542 ATPases with chaperone activity, ATP-binding; hypothetical protein complement(403847..406138) Neisseria gonorrhoeae FA 1090 3281945 YP_207564.1 CDS clpS NC_002946.2 406140 406442 R involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS complement(406140..406442) Neisseria gonorrhoeae FA 1090 3282076 YP_207565.1 CDS NGO0410 NC_002946.2 406687 406890 D Best Blastp Hit: pir||C81151 cold-shock domain family protein NMB0838 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226073|gb|AAF41249.1| (AE002437) cold-shock domain family protein [Neisseria meningitidis MC58]; COG1278 Cold shock proteins; cold shock protein; CspA protein 406687..406890 Neisseria gonorrhoeae FA 1090 3282233 YP_207566.1 CDS NGO0411 NC_002946.2 407189 408520 R Best Blastp Hit: pir||H81869 hypothetical protein NMA1048 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379746|emb|CAB84314.1| (AL162755) hypothetical protein NMA1048 [Neisseria meningitidis]; COG0312 Predicted Zn-dependent proteases and their; hypothetical protein complement(407189..408520) Neisseria gonorrhoeae FA 1090 3282532 YP_207567.1 CDS NGO0412 NC_002946.2 408674 409180 D Best Blastp Hit: pir||A81870 hypothetical protein NMA1049 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379747|emb|CAB84315.1| (AL162755) hypothetical protein NMA1049 [Neisseria meningitidis]; hypothetical protein 408674..409180 Neisseria gonorrhoeae FA 1090 3282558 YP_207568.1 CDS NGO0413 NC_002946.2 409227 409940 D Best Blastp Hit: gb|AAF62913.1| (AF234832) thiosulphate sulphur transferase [Neisseria gonorrhoeae]; thiosulfate sulfur transferase 409227..409940 Neisseria gonorrhoeae FA 1090 3283003 YP_207569.1 CDS NGO0414 NC_002946.2 410009 411709 D Best Blastp Hit: gb|AAF62912.1| (AF234832) RecJ [Neisseria gonorrhoeae]; COG0608 Single-stranded DNA-specific exonuclease; hypothetical protein 410009..411709 Neisseria gonorrhoeae FA 1090 3283002 YP_207570.1 CDS NGO0415 NC_002946.2 412067 413425 D Best Blastp Hit: emb|CAB84318.1| (AL162755) poly(A) polymerase [Neisseria meningitidis]; COG0617 tRNA nucleotidyltransferase/poly(A); hypothetical protein 412067..413425 Neisseria gonorrhoeae FA 1090 3283001 YP_207571.1 CDS NGO0416 NC_002946.2 413598 413921 D Best Blastp Hit: pir||A81152 hypothetical protein NMB0844 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226079|gb|AAF41255.1| (AE002437) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 413598..413921 Neisseria gonorrhoeae FA 1090 3283000 YP_207572.1 CDS NGO0417 NC_002946.2 414026 414979 R Best Blastp Hit: pir||F81870 hypothetical protein NMA1056 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379752|emb|CAB84320.1| (AL162755) hypothetical protein NMA1056 [Neisseria meningitidis]; COG1702 Phosphate starvation-inducible protein; hypothetical protein complement(414026..414979) Neisseria gonorrhoeae FA 1090 3282999 YP_207573.1 CDS NGO0418 NC_002946.2 415005 415490 R Best Blastp Hit: emb|CAB84321.1| (AL162755) glycosyl transferase [Neisseria meningitidis]; COG0438 Glycosyltransferases I; glycosyl transferase family protein complement(415005..415490) Neisseria gonorrhoeae FA 1090 3282998 YP_207574.1 CDS NGO0419 NC_002946.2 415590 416177 R hypothetical protein complement(415590..416177) Neisseria gonorrhoeae FA 1090 3282997 YP_207575.1 CDS NGO0420 NC_002946.2 416315 417049 D Best Blastp Hit: pir||A81871 probable periplasmic protein NMA1059 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379755|emb|CAB84323.1| (AL162755) periplasmic protein [Neisseria meningitidis]; hypothetical protein 416315..417049 Neisseria gonorrhoeae FA 1090 3282996 YP_207576.1 CDS dcd NC_002946.2 417115 417681 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(417115..417681) Neisseria gonorrhoeae FA 1090 3282995 YP_207577.1 CDS NGO0422 NC_002946.2 417777 418166 R Best Blastp Hit: pir||C81871 probable periplasmic protein NMA1061 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379757|emb|CAB84325.1| (AL162755) periplasmic protein [Neisseria meningitidis]; hypothetical protein complement(417777..418166) Neisseria gonorrhoeae FA 1090 3282580 YP_207578.1 CDS rdgC NC_002946.2 418218 419117 R Required for efficient pilin antigenic variation; recombination associated protein complement(418218..419117) Neisseria gonorrhoeae FA 1090 3282581 YP_207579.1 CDS engA NC_002946.2 419148 420605 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(419148..420605) Neisseria gonorrhoeae FA 1090 3282582 YP_207580.1 CDS NGO0425 NC_002946.2 420755 421384 R Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); hypothetical protein complement(420755..421384) Neisseria gonorrhoeae FA 1090 3282171 YP_207581.1 CDS hisS NC_002946.2 421385 422680 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(421385..422680) Neisseria gonorrhoeae FA 1090 3282181 YP_207582.1 CDS NGO0427 NC_002946.2 422808 423464 R Best Blastp Hit: emb|CAB84330.1| (AL162755) periplasmic protein [Neisseria meningitidis]; COG1101 ATPase components of various transport; hypothetical protein complement(422808..423464) Neisseria gonorrhoeae FA 1090 3281937 YP_207583.1 CDS NGO0428 NC_002946.2 423520 423744 R Best Blastp Hit: emb|CAB84342.1| (AL162755) hypothetical protein NMA1079 [Neisseria meningitidis]; hypothetical protein complement(423520..423744) Neisseria gonorrhoeae FA 1090 3281815 YP_207584.1 CDS NGO0429 NC_002946.2 423973 424110 R Best Blastp Hit: emb|CAB84343.1| (AL162755) hypothetical protein NMA1080 [Neisseria meningitidis]; hypothetical protein complement(423973..424110) Neisseria gonorrhoeae FA 1090 3281923 YP_207585.1 CDS NGO0430 NC_002946.2 425228 425518 R Best Blastp Hit: gb|AAF41275.1| (AE002439) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(425228..425518) Neisseria gonorrhoeae FA 1090 3281991 YP_207586.1 CDS NGO0432 NC_002946.2 426078 426620 R Best Blastp Hit: pir||A81874 probable periplasmic protein NMA1084 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379779|emb|CAB84347.1| (AL162755) periplasmic protein [Neisseria meningitidis]; hypothetical protein complement(426078..426620) Neisseria gonorrhoeae FA 1090 3281996 YP_207587.1 CDS NGO0433 NC_002946.2 426786 427709 D Best Blastp Hit: emb|CAB84348.1| (AL162755) hypothetical protein NMA1085 [Neisseria meningitidis]; COG0564 Predicted pseudouridylate synthase 2; hypothetical protein 426786..427709 Neisseria gonorrhoeae FA 1090 3282061 YP_207588.1 CDS NGO0434 NC_002946.2 427788 428429 R Best Blastp Hit: pir||C81874 hypothetical protein NMA1086 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379781|emb|CAB84349.1| (AL162755) hypothetical protein NMA1086 [Neisseria meningitidis]; hypothetical protein complement(427788..428429) Neisseria gonorrhoeae FA 1090 3282098 YP_207589.1 CDS NGO0435 NC_002946.2 428484 429275 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(428484..429275) Neisseria gonorrhoeae FA 1090 3282074 YP_207590.1 CDS panB NC_002946.2 429658 430449 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 429658..430449 Neisseria gonorrhoeae FA 1090 3282104 YP_207591.1 CDS panC NC_002946.2 430572 431408 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 430572..431408 Neisseria gonorrhoeae FA 1090 3282128 YP_207592.1 CDS lolB NC_002946.2 433712 434293 D Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 433712..434293 Neisseria gonorrhoeae FA 1090 3282511 YP_207593.1 CDS ipk NC_002946.2 434303 435148 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 434303..435148 Neisseria gonorrhoeae FA 1090 3282196 YP_207594.1 CDS NGO0441 NC_002946.2 435487 436470 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 435487..436470 Neisseria gonorrhoeae FA 1090 3282428 YP_207595.1 CDS NGO0442 NC_002946.2 436537 437109 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 436537..437109 Neisseria gonorrhoeae FA 1090 3282298 YP_207596.1 CDS NGO0443 NC_002946.2 437235 438404 R Best Blastp Hit: pir||H81146 penicillin-binding protein NMB0877 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226115|gb|AAF41288.1| (AE002440) penicillin-binding protein [Neisseria meningitidis MC58]; COG1686 D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine carboxypeptidase / penicillin binding protein complement(437235..438404) Neisseria gonorrhoeae FA 1090 3282456 YP_207597.1 CDS NGO0444 NC_002946.2 438553 440079 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 438553..440079 Neisseria gonorrhoeae FA 1090 3281086 YP_207598.1 CDS NGO0445 NC_002946.2 440135 441211 R Best Blastp Hit: pir||F81875 sulfate ABC transporter ATP-binding protein NMA1097 [similarity] - Neisseria meningitidis (group A strain Z2491) >gi|7379792|emb|CAB84360.1| (AL162755) sulphate permease ATP-binding protein [Neisseria meningitidis]; COG1118 ABC-type sulfate/molybdenum transport; ABC transporter ATP-binding protein complement(440135..441211) Neisseria gonorrhoeae FA 1090 3281417 YP_207599.1 CDS NGO0446 NC_002946.2 441352 442173 R Best Blastp Hit: pir||C81147 sulfate ABC transporter permease NMB0880 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226118|gb|AAF41291.1| (AE002440) sulfate ABC transporter permease [Neisseria meningitidis MC58]; COG0555 ABC-type cysteine/molybdate transport; ABC transporter complement(441352..442173) Neisseria gonorrhoeae FA 1090 3281095 YP_207600.1 CDS NGO0448 NC_002946.2 443377 443709 D Best Blastp Hit: pir||B81876 hypothetical protein NMA1101 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379796|emb|CAB84364.1| (AL162755) hypothetical protein NMA1101 [Neisseria meningitidis]; hypothetical protein 443377..443709 Neisseria gonorrhoeae FA 1090 3281655 YP_207601.1 CDS NGO0449 NC_002946.2 444039 444548 D Best Blastp Hit: gb|AAF41294.1| (AE002440) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379797|emb|CAB84365.1| (AL162755) integral membrane protein [Neisseria meningitidis]; COG1755 Uncharacterized BCR, YpbQ family; hypothetical protein 444039..444548 Neisseria gonorrhoeae FA 1090 3282994 YP_207602.1 CDS NGO0451 NC_002946.2 445524 446930 D unwinds double stranded DNA; replicative DNA helicase 445524..446930 Neisseria gonorrhoeae FA 1090 3282993 YP_207603.1 CDS NGO0452 NC_002946.2 447238 447903 D Best Blastp Hit: pir||F81876 hypothetical protein NMA1106 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379800|emb|CAB84368.1| (AL162755) hypothetical protein NMA1106 [Neisseria meningitidis]; hypothetical protein 447238..447903 Neisseria gonorrhoeae FA 1090 3282992 YP_207604.1 CDS NGO0453 NC_002946.2 447935 448546 D Best Blastp Hit: pir||F81145 type IV pilus assembly protein PilV, probable NMB0887 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226125|gb|AAF41297.1| (AE002441) type IV pilus assembly protein PilV, [Neisseria meningitidis MC58]; hypothetical protein 447935..448546 Neisseria gonorrhoeae FA 1090 3282991 YP_207605.1 CDS NGO0454 NC_002946.2 448543 449523 D Best Blastp Hit: pir||H81876 probable membrane protein NMA1108 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379802|emb|CAB84370.1| (AL162755) membrane protein [Neisseria meningitidis]; hypothetical protein 448543..449523 Neisseria gonorrhoeae FA 1090 3282990 YP_207606.1 CDS NGO0455 NC_002946.2 449502 450113 D Best Blastp Hit: pir||H81145 hypothetical protein NMB0889 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226127|gb|AAF41299.1| (AE002441) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 449502..450113 Neisseria gonorrhoeae FA 1090 3282989 YP_207607.1 CDS NGO0456 NC_002946.2 450100 450588 D Best Blastp Hit: gb|AAF62322.1| (AE002441) type IV pilin-related protein [Neisseria meningitidis MC58]; type IV pilin-like protein 450100..450588 Neisseria gonorrhoeae FA 1090 3282988 YP_207608.1 CDS NGO0457 NC_002946.2 450658 450966 R hypothetical protein complement(450658..450966) Neisseria gonorrhoeae FA 1090 3282987 YP_207609.1 CDS dut NC_002946.2 451840 452292 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 451840..452292 Neisseria gonorrhoeae FA 1090 3282986 YP_207610.1 CDS NGO0460 NC_002946.2 452364 453551 D catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase 452364..453551 Neisseria gonorrhoeae FA 1090 3282985 YP_207611.1 CDS NGO0461 NC_002946.2 453863 454642 D Best Blastp Hit: pir||F81877 hypothetical protein NMA1114 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379808|emb|CAB84376.1| (AL162755) hypothetical protein NMA1114 [Neisseria meningitidis]; hypothetical protein 453863..454642 Neisseria gonorrhoeae FA 1090 3282984 YP_207612.1 CDS NGO0462 NC_002946.2 455173 456369 D Best Blastp Hit: pir||B82272 integrase, phage family VC0847 [imported] - Vibrio cholerae (group O1 strain N16961) >gi|498253|gb|AAC44230.1| (U02372) integrase [Vibrio cholerae] >gi|1100883|gb|AAA82714.1| (U39068) integrase [Vibrio cholerae] >gi|9655299|gb|AAF94009.1| (AE004170) integrase, phage family [Vibrio cholerae]; phage integrase, phage associated protein 455173..456369 Neisseria gonorrhoeae FA 1090 3282983 YP_207613.1 CDS NGO0463 NC_002946.2 456725 456994 R phage associated protein complement(456725..456994) Neisseria gonorrhoeae FA 1090 3283077 YP_207614.1 CDS NGO0464 NC_002946.2 457189 457872 R Best Blastp Hit: gb|AAF94355.1| (AE004199) hypothetical protein [Vibrio cholerae]; phage associated protein complement(457189..457872) Neisseria gonorrhoeae FA 1090 3282982 YP_207615.1 CDS NGO0465 NC_002946.2 457883 458419 R phage associated protein complement(457883..458419) Neisseria gonorrhoeae FA 1090 3282981 YP_207616.1 CDS NGO0466 NC_002946.2 458530 458745 R Best Blastp Hit: pir||A71978 methyl-accepting chemotaxis protein (MCP) - Helicobacter pylori (strain J99) >gi|4154575|gb|AAD05650.1| (AE001446) methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]; phage associated protein complement(458530..458745) Neisseria gonorrhoeae FA 1090 3282974 YP_207617.1 CDS NGO0467 NC_002946.2 458797 459288 R Best Blastp Hit: pir||T13296 hypothetical protein 8 - Streptococcus phage phi-O1205 >gi|2444088|gb|AAC79524.1| (U88974) ORF8 [Streptococcus thermophilus temperate bacteriophage O1205]; phage associated protein complement(458797..459288) Neisseria gonorrhoeae FA 1090 3282980 YP_207618.1 CDS NGO0468 NC_002946.2 459285 459467 R Best Blastp Hit: emb|CAA61912.1| (X89769) fructose-1,6-bisphosphate aldolase [Euglena gracilis]; phage associated protein complement(459285..459467) Neisseria gonorrhoeae FA 1090 3282979 YP_207619.1 CDS NGO0469 NC_002946.2 459607 460293 R Best Blastp Hit: gb|AAC98788.1| (AF102780) replicase [Banana bunchy top virus]; phage associated protein complement(459607..460293) Neisseria gonorrhoeae FA 1090 3282978 YP_207620.1 CDS NGO0470 NC_002946.2 460362 460523 R phage associated protein complement(460362..460523) Neisseria gonorrhoeae FA 1090 3282976 YP_207621.1 CDS NGO0471 NC_002946.2 460520 460735 R Best Blastp Hit: gb|AAF41312.1| (AE002442) hypothetical protein [Neisseria meningitidis MC58]; phage associated protein complement(460520..460735) Neisseria gonorrhoeae FA 1090 3283076 YP_207622.1 CDS NGO0472 NC_002946.2 460949 461236 R phage associated protein complement(460949..461236) Neisseria gonorrhoeae FA 1090 3282975 YP_207623.1 CDS NGO0473 NC_002946.2 461422 461697 R phage associated protein complement(461422..461697) Neisseria gonorrhoeae FA 1090 3282977 YP_207624.1 CDS NGO0474 NC_002946.2 461694 462170 R phage associated protein complement(461694..462170) Neisseria gonorrhoeae FA 1090 3282973 YP_207625.1 CDS NGO0475 NC_002946.2 462203 462403 R phage associated protein complement(462203..462403) Neisseria gonorrhoeae FA 1090 3282972 YP_207626.1 CDS NGO0476 NC_002946.2 462601 463014 R Best Blastp Hit: sp|P41637|CADH_PINTA cinnamyl-alcohol dehydrogenase (CAD) >gi|1076238|pir||S49443 cinnamyl-alcohol dehydrogenase (EC 1.1.1.195) A - loblolly pine >gi|558385|emb|CAA86072.1| (Z37991) cinnamyl alcohol dehydrogenase [Pinus taeda]; phage associated protein complement(462601..463014) Neisseria gonorrhoeae FA 1090 3282968 YP_207627.1 CDS NGO0477 NC_002946.2 463011 463448 R Best Blastp Hit: sp|P55409|Y4DJ_RHISN hypothetical transcriptional regulator Y4DJ >gi|7465604|pir||T02773 y4dJ protein - Rhizobium sp. plasmid pNGR234a >gi|2182353|gb|AAB91639.1| (AE000069) Y4dJ [Rhizobium sp. NGR234]; phage associated protein complement(463011..463448) Neisseria gonorrhoeae FA 1090 3282971 YP_207628.1 CDS NGO0478 NC_002946.2 463489 463926 R phage associated protein complement(463489..463926) Neisseria gonorrhoeae FA 1090 3282970 YP_207629.1 CDS NGO0479 NC_002946.2 464039 464755 R Best Blastp Hit: gb|AAF83310.1|AE003899_2 (AE003899) phage-related repressor protein [Xylella fastidiosa]; lambda repressor protein cI, phage associated protein complement(464039..464755) Neisseria gonorrhoeae FA 1090 3282967 YP_207630.1 CDS NGO0480 NC_002946.2 465140 465295 D phage associated protein 465140..465295 Neisseria gonorrhoeae FA 1090 3282966 YP_207631.1 CDS NGO0481 NC_002946.2 465272 465460 R phage associated protein complement(465272..465460) Neisseria gonorrhoeae FA 1090 3282969 YP_207632.1 CDS NGO0482 NC_002946.2 465465 465827 R phage associated protein complement(465465..465827) Neisseria gonorrhoeae FA 1090 3282965 YP_207633.1 CDS NGO0483 NC_002946.2 465633 465860 D phage associated protein 465633..465860 Neisseria gonorrhoeae FA 1090 3282964 YP_207634.1 CDS NGO0484 NC_002946.2 465978 467042 D Best Blastp Hit: gi|9634200 Gp54 [Bacteriophage HK97] >gi|6901629|gb|AAF31132.1| (AF069529) Gp54 [Bacteriophage HK97]; phage associated protein 465978..467042 Neisseria gonorrhoeae FA 1090 3282963 YP_207635.1 CDS NGO0485 NC_002946.2 467039 468400 D Best Blastp Hit: sp|P37469|DNAC_BACSU replicative DNA helicase >gi|2127189|pir||S65970 replicative DNA helicase dnaC - Bacillus subtilis >gi|467330|dbj|BAA05176.1| (D26185) replicative DNA helicase [Bacillus subtilis] >gi|2636591|emb|CAB16081.1| (Z99124) replicative DNA helicase [Bacillus subtilis]; COG0305 Replicative DNA helicase; replicative DNA helicase, phage associated protein 467039..468400 Neisseria gonorrhoeae FA 1090 3282962 YP_207636.1 CDS NGO0486 NC_002946.2 468417 468701 D phage associated protein 468417..468701 Neisseria gonorrhoeae FA 1090 3282961 YP_207637.1 CDS NGO0487 NC_002946.2 468740 469234 D phage associated protein 468740..469234 Neisseria gonorrhoeae FA 1090 3282960 YP_207638.1 CDS NGO0488 NC_002946.2 469411 469560 D phage associated protein 469411..469560 Neisseria gonorrhoeae FA 1090 3282959 YP_207639.1 CDS NGO0489 NC_002946.2 469696 470241 D Best Blastp Hit: sp|Q37873|RUSA_BP82 crossover junction endodeoxyribonuclease RusA (Holliday junction nuclease RusA) (Holliday juction resolvase) >gi|2120247|pir||S66583 crossover junction endodeoxyribonuclease (EC 3.1.22.4) rusA - phage 82 >gi|1051116|emb|CAA63330.1| (X92588) Can suppress the phenotype of ruv mutants [Bacteriophage 82]; phage associated protein 469696..470241 Neisseria gonorrhoeae FA 1090 3282958 YP_207640.1 CDS NGO0490 NC_002946.2 470231 470464 D phage associated protein 470231..470464 Neisseria gonorrhoeae FA 1090 3282957 YP_207641.1 CDS NGO0491 NC_002946.2 470508 470915 D phage associated protein 470508..470915 Neisseria gonorrhoeae FA 1090 3283074 YP_207642.1 CDS NGO0492 NC_002946.2 471138 471644 D Best Blastp Hit: pir||F69137 hypothetical protein MTH296 - Methanobacterium thermoautotrophicum (strain Delta H) >gi|2621349|gb|AAB84802.1| (AE000815) unknown [Methanobacterium thermoautotrophicum]; phage associated protein 471138..471644 Neisseria gonorrhoeae FA 1090 3282956 YP_207643.1 CDS NGO0493 NC_002946.2 471965 472186 D phage associated protein 471965..472186 Neisseria gonorrhoeae FA 1090 3282955 YP_207644.1 CDS NGO0494 NC_002946.2 472479 472928 D Best Blastp Hit: sp|P76546|YFFO_ECOLI hypothetical 15.7 KDA protein in EutB-EutH intergenic region >gi|7466364|pir||E65019 hypothetical protein b2446 - Escherichia coli (strain K-12) >gi|1788787|gb|AAC75499.1| (AE000331) orf, hypothetical protein [Escherichia coli]; phage associated protein 472479..472928 Neisseria gonorrhoeae FA 1090 3282938 YP_207645.1 CDS NGO0495 NC_002946.2 472990 474411 D Best Blastp Hit: pir||H82649 hypothetical protein XF1674 XF1569 [imported] - Xylella fastidiosa (strain 9a5c) >gi|9106614|gb|AAF84378.1|AE003986_8 (AE003986) hypothetical protein [Xylella fastidiosa] >gi|9106736|gb|AAF84483.1|AE003993_2 (AE003993) hypothetical protein [Xylella fastidiosa]; phage associated protein 472990..474411 Neisseria gonorrhoeae FA 1090 3282954 YP_207646.1 CDS NGO0496 NC_002946.2 474408 476555 D Best Blastp Hit: pir||G81057 hypothetical protein NMB1656 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226908|gb|AAF42005.1| (AE002516) hypothetical protein [Neisseria meningitidis MC58]; phage associated protein 474408..476555 Neisseria gonorrhoeae FA 1090 3282953 YP_207647.1 CDS NGO0497 NC_002946.2 476623 477780 D Best Blastp Hit: pir||B81819 hypothetical protein NMA1914 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380548|emb|CAB85135.1| (AL162757) hypothetical protein [Neisseria meningitidis]; phage associated protein 476623..477780 Neisseria gonorrhoeae FA 1090 3282952 YP_207648.1 CDS NGO0498 NC_002946.2 477821 479320 D Best Blastp Hit: sp|P23739|SUIS_RAT sucrase-isomaltase, intestinal [contains: sucrase ; isomaltase ]; phage associated protein 477821..479320 Neisseria gonorrhoeae FA 1090 3282951 YP_207649.1 CDS NGO0499 NC_002946.2 479327 479689 D phage associated protein 479327..479689 Neisseria gonorrhoeae FA 1090 3282950 YP_207650.1 CDS NGO0500 NC_002946.2 479692 480222 D phage associated protein 479692..480222 Neisseria gonorrhoeae FA 1090 3282949 YP_207651.1 CDS NGO0501 NC_002946.2 480370 480702 D phage associated protein 480370..480702 Neisseria gonorrhoeae FA 1090 3282948 YP_207652.1 CDS NGO0502 NC_002946.2 480699 481127 D phage associated protein 480699..481127 Neisseria gonorrhoeae FA 1090 3282947 YP_207653.1 CDS NGO0503 NC_002946.2 481153 481926 D phage associated protein 481153..481926 Neisseria gonorrhoeae FA 1090 3282946 YP_207654.1 CDS NGO0504 NC_002946.2 481987 482316 D phage associated protein 481987..482316 Neisseria gonorrhoeae FA 1090 3282945 YP_207655.1 CDS NGO0505 NC_002946.2 482328 482594 D Best Blastp Hit: gb|AAD32742.1| (AF127374) MmcR [Streptomyces lavendulae]; phage associated protein 482328..482594 Neisseria gonorrhoeae FA 1090 3282944 YP_207656.1 CDS NGO0506 NC_002946.2 482594 483193 D phage associated protein 482594..483193 Neisseria gonorrhoeae FA 1090 3282943 YP_207657.1 CDS NGO0507 NC_002946.2 483190 484044 D phage associated protein 483190..484044 Neisseria gonorrhoeae FA 1090 3282942 YP_207658.1 CDS NGO0508 NC_002946.2 484046 484477 D Best Blastp Hit: sp|P77685|SPR_ECOLI lipoprotein SPR precursor >gi|7430106|pir||F64986 hypothetical protein b2175 - Escherichia coli (strain K-12) >gi|1498150|dbj|BAA13140.1| (D86610) Spr [Escherichia coli] >gi|1736840|dbj|BAA15983.1| (D90849) Probable lipoprotein NlpC homolog precursor. [Escherichia coli] >gi|1788501|gb|AAC75236.1| (AE000307) lipoprotein [Escherichia coli]; phage associated protein 484046..484477 Neisseria gonorrhoeae FA 1090 3282941 YP_207659.1 CDS NGO0509 NC_002946.2 484505 484786 R Best Blastp Hit: gb|AAF84381.1|AE003986_11 (AE003986) hypothetical protein [Xylella fastidiosa] >gi|9106739|gb|AAF84486.1|AE003993_5 (AE003993) hypothetical protein [Xylella fastidiosa]; phage associated protein complement(484505..484786) Neisseria gonorrhoeae FA 1090 3282940 YP_207660.1 CDS NGO0510 NC_002946.2 485026 489171 D Best Blastp Hit: gi|10955733 phage lambda host specific protein J [Yersinia pestis] >gi|7467468|pir||T14652 protein J - Yersinia pestis plasmid pMT1 >gi|2996342|gb|AAC13222.1| (AF053947) phage lambda host specific protein J [Yersinia pestis]; phage associated protein 485026..489171 Neisseria gonorrhoeae FA 1090 3282939 YP_207661.1 CDS NGO0511 NC_002946.2 489283 489588 D hypothetical protein 489283..489588 Neisseria gonorrhoeae FA 1090 3282937 YP_207662.1 CDS NGO0512 NC_002946.2 489593 490528 R Best Blastp Hit: gb|AAB32262.1|S75490_1 (S75490) orf2 [Neisseria gonorrhoeae]; phage associated protein complement(489593..490528) Neisseria gonorrhoeae FA 1090 3282936 YP_207663.1 CDS NGO0513 NC_002946.2 489659 490129 D phage associated protein 489659..490129 Neisseria gonorrhoeae FA 1090 3282935 YP_207664.1 CDS NGO0514 NC_002946.2 490130 490462 D phage associated protein 490130..490462 Neisseria gonorrhoeae FA 1090 3282934 YP_207665.1 CDS NGO0515 NC_002946.2 490591 490824 R phage associated protein complement(490591..490824) Neisseria gonorrhoeae FA 1090 3282933 YP_207666.1 CDS NGO0516 NC_002946.2 490832 491179 R Best Blastp Hit: gb|AAF41321.1| (AE002443) pemK protein [Neisseria meningitidis MC58]; plasmid stable inheritance protein phage associated protein complement(490832..491179) Neisseria gonorrhoeae FA 1090 3282932 YP_207667.1 CDS NGO0517 NC_002946.2 491179 491415 R Best Blastp Hit: gb|AAF41322.1| (AE002443) pemI protein [Neisseria meningitidis MC58]; pemI-like protein (PemI), phage associated protein complement(491179..491415) Neisseria gonorrhoeae FA 1090 3282931 YP_207668.1 CDS NGO0518 NC_002946.2 491622 492161 D phage associated protein 491622..492161 Neisseria gonorrhoeae FA 1090 3282930 YP_207669.1 CDS NGO0519 NC_002946.2 492162 492506 D Best Blastp Hit: pir||B81142 hypothetical protein NMB0912 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226150|gb|AAF41320.1| (AE002443) hypothetical protein [Neisseria meningitidis MC58]; phage associated protein 492162..492506 Neisseria gonorrhoeae FA 1090 3282929 YP_207670.1 CDS NGO0520 NC_002946.2 492680 492991 D phage associated protein 492680..492991 Neisseria gonorrhoeae FA 1090 3282925 YP_207671.1 CDS NGO0521 NC_002946.2 493004 493153 D Best Blastp Hit: gb|AAF41392.1| (AE002449) hypothetical protein [Neisseria meningitidis MC58]; phage associated protein 493004..493153 Neisseria gonorrhoeae FA 1090 3282928 YP_207672.1 CDS NGO0522 NC_002946.2 493183 496230 D Best Blastp Hit: gi|9634160 tail length tape measure protein [Bacteriophage HK97] >gi|6901589|gb|AAF31092.1|AF069529_5 (AF069529) tail length tape measure protein [Bacteriophage HK97]; tail length tape measure protein, phage associated protein 493183..496230 Neisseria gonorrhoeae FA 1090 3282926 YP_207673.1 CDS NGO0523 NC_002946.2 496290 496769 R Best Blastp Hit: pir||H81143 hypothetical protein NMB0899 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226136|gb|AAF41307.1| (AE002442) hypothetical protein [Neisseria meningitidis MC58]; phage associated protein complement(496290..496769) Neisseria gonorrhoeae FA 1090 3282927 YP_207674.1 CDS NGO0524 NC_002946.2 497111 498100 R Best Blastp Hit: gb|AAF68420.1|AF237934_1 (AF237934) integrase/recombinase [Pasteurella multocida]; COG0582 Integrase; integrase complement(497111..498100) Neisseria gonorrhoeae FA 1090 3282923 YP_207675.1 CDS NGO0525 NC_002946.2 498360 498548 R Best Blastp Hit: emb|CAB84662.1| (AL162755) hypothetical protein NMA1423 [Neisseria meningitidis]; hypothetical protein complement(498360..498548) Neisseria gonorrhoeae FA 1090 3282924 YP_207676.1 CDS NGO0526 NC_002946.2 498789 499823 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 498789..499823 Neisseria gonorrhoeae FA 1090 3282922 YP_207677.1 CDS NGO0527 NC_002946.2 500439 500957 D Best Blastp Hit: pir||D81804 hypothetical protein NMA1789 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380430|emb|CAB85016.1| (AL162757) hypothetical protein [Neisseria meningitidis]; hypothetical protein 500439..500957 Neisseria gonorrhoeae FA 1090 3282921 YP_207678.1 CDS NGO0528 NC_002946.2 500821 501474 D Best Blastp Hit: pir||G81087 IS1016C2 transposase NMB1411 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226649|gb|AAF41773.1| (AE002489) IS1016C2 transposase [Neisseria meningitidis MC58]; IS1016 transposase 500821..501474 Neisseria gonorrhoeae FA 1090 3282920 YP_207679.1 CDS NGO0529 NC_002946.2 501653 503635 D Best Blastp Hit: pir||E81839 probable transmembrane transport protein NMA1483 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380131|emb|CAB84716.1| (AL162756) transmembrane transport protein [Neisseria meningitidis]; COG1292 Choline-glycine betaine transporter; high-affinity choline transport protein 501653..503635 Neisseria gonorrhoeae FA 1090 3282919 YP_207680.1 CDS NGO0530 NC_002946.2 503725 505278 R activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(503725..505278) Neisseria gonorrhoeae FA 1090 3282918 YP_207681.1 CDS NGO0531 NC_002946.2 505291 505446 D Best Blastp Hit: pir||T30159 hypothetical protein C37A2.7 - Caenorhabditis elegans >gi|1943794|gb|AAB52450.1| (U97194) strong similarity to 60S acidic ribosomal protein P2 [Caenorhabditis elegans]; hypothetical protein 505291..505446 Neisseria gonorrhoeae FA 1090 3282917 YP_207682.1 CDS NGO0532 NC_002946.2 505529 506722 R Best Blastp Hit: emb|CAB84713.1| (AL162756) periplasmic protein [Neisseria meningitidis]; hypothetical protein complement(505529..506722) Neisseria gonorrhoeae FA 1090 3282916 YP_207683.1 CDS NGO0533 NC_002946.2 506719 507702 R Best Blastp Hit: pir||A81839 probable periplasmic protein NMA1479 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380127|emb|CAB84712.1| (AL162756) periplasmic protein [Neisseria meningitidis]; hypothetical protein complement(506719..507702) Neisseria gonorrhoeae FA 1090 3282914 YP_207684.1 CDS NGO0534 NC_002946.2 507713 509149 R Best Blastp Hit: pir||C81103 alginate O-acetylation protein AlgI, probable NMB1273 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226512|gb|AAF41650.1| (AE002475) alginate O-acetylation protein AlgI, [Neisseria meningitidis MC58]; COG1696 Predicted membrane protein involved in; alginate O-acetylation - like protein complement(507713..509149) Neisseria gonorrhoeae FA 1090 3282915 YP_207685.1 CDS NGO0537 NC_002946.2 510723 511097 D Best Blastp Hit: emb|CAB84710.1| (AL162756) mercuric ion binding protein [Neisseria meningitidis]; COG2217 Cation transport ATPases; hypothetical protein 510723..511097 Neisseria gonorrhoeae FA 1090 3282913 YP_207686.1 CDS NGO0539 NC_002946.2 512905 514002 D Best Blastp Hit: pir||G81102 hypothetical protein NMB1269 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226508|gb|AAF41646.1| (AE002475) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 512905..514002 Neisseria gonorrhoeae FA 1090 3282912 YP_207687.1 CDS NGO0541 NC_002946.2 515356 515811 D Best Blastp Hit: pir||E81102 low molecular weight protein tyrosine-phosphatase NMB1267 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226506|gb|AAF41644.1| (AE002475) low molecular weight protein tyrosine-phosphatase [Neisseria meningitidis MC58]; COG0394 protein-tyrosine-phosphatase; low-molecular weight phosphotyrosine protein phosphatase 515356..515811 Neisseria gonorrhoeae FA 1090 3282911 YP_207688.1 CDS NGO0542 NC_002946.2 515888 516364 D Best Blastp Hit: pir||B81838 probable cation uptake regulator NMA1471 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380120|emb|CAB84705.1| (AL162756) cation uptake regulator [Neisseria meningitidis]; COG0735 Ferric uptake regulation protein; hypothetical protein 515888..516364 Neisseria gonorrhoeae FA 1090 3282910 YP_207689.1 CDS NGO0543 NC_002946.2 516352 517278 D Best Blastp Hit: emb|CAB84704.1| (AL162756) hypothetical protein NMA1470 [Neisseria meningitidis]; COG0523 GTPases (G3E family); hypothetical protein 516352..517278 Neisseria gonorrhoeae FA 1090 3282909 YP_207690.1 CDS NGO0544 NC_002946.2 517343 517900 D Best Blastp Hit: pir||H81837 probable peptidylprolyl isomerase (EC 5.2.1.8) A NMA1469 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380118|emb|CAB84703.1| (AL162756) peptidyl-prolyl cis-trans isomerase A [Neisseria meningitidis]; COG0652 Peptidyl-prolyl cis-trans isomerase; peptidyl-prolyl cis-trans isomerase A 517343..517900 Neisseria gonorrhoeae FA 1090 3282908 YP_207691.1 CDS NGO0545 NC_002946.2 518016 520079 D Best Blastp Hit: possibly phase variable - 13 tandem repeats of CCAAC in the coding sequence (ON); COG2189 Adenine specific DNA methylase Mod; type III restriction-modification system methyltransferase 518016..520079 Neisseria gonorrhoeae FA 1090 3282907 YP_207692.1 CDS NGO0546 NC_002946.2 520169 523108 D Best Blastp Hit: gb|AAF41638.1| (AE002474) type III restriction-modification system EcoPI enzyme, subunit res [Neisseria meningitidis MC58]; type III restriction-modification system endonuclease 520169..523108 Neisseria gonorrhoeae FA 1090 3282114 YP_207693.1 CDS NGO0547 NC_002946.2 523202 524161 R TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase complement(523202..524161) Neisseria gonorrhoeae FA 1090 3282109 YP_207694.1 CDS NGO0548 NC_002946.2 524253 525119 R Best Blastp Hit: pir||G81129 conserved hypothetical protein NMB1024 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226264|gb|AAF41424.1| (AE002453) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0354 Predicted aminomethyltransferase related to; hypothetical protein complement(524253..525119) Neisseria gonorrhoeae FA 1090 3282117 YP_207695.1 CDS NGO0549 NC_002946.2 525151 525513 R Best Blastp Hit: gb|AAF41425.1| (AE002453) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0251 translation initiation inhibitor; hypothetical protein complement(525151..525513) Neisseria gonorrhoeae FA 1090 3282121 YP_207696.1 CDS NGO0550 NC_002946.2 525588 526067 D Best Blastp Hit: pir||B81837 hypothetical protein NMA1462 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380112|emb|CAB84696.1| (AL162756) hypothetical protein NMA1462 [Neisseria meningitidis]; hypothetical protein 525588..526067 Neisseria gonorrhoeae FA 1090 3282124 YP_207697.1 CDS NGO0551 NC_002946.2 526089 526781 D Best Blastp Hit: emb|CAB84695.1| (AL162756) dnaJ-family protein [Neisseria meningitidis]; COG0484 Molecular chaperones, DnaJ family (contain; dnaJ-family protein 526089..526781 Neisseria gonorrhoeae FA 1090 3282125 YP_207698.1 CDS NGO0552 NC_002946.2 526785 527660 D Best Blastp Hit: pir||B81130 conserved hypothetical protein NMB1028 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226267|gb|AAF41427.1| (AE002453) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 526785..527660 Neisseria gonorrhoeae FA 1090 3282119 YP_207699.1 CDS NGO0553 NC_002946.2 527868 531488 D Best Blastp Hit: gb|AAG08282.1|AE004902_10 (AE004902) hypothetical protein [Pseudomonas aeruginosa]; COG1629 Outer membrane receptor proteins, mostly; TonB-dependent receptor 527868..531488 Neisseria gonorrhoeae FA 1090 3282081 YP_207700.1 CDS NGO0554 NC_002946.2 531770 532720 D Best Blastp Hit: sp|Q03155|AIDA_ECOLI adhesin Aida-i precursor >gi|281809|pir||S28634 adhesin AIDA-I precursor - Escherichia coli plasmid pIB6 >gi|42255|emb|CAA46156.1| (X65022) AIDA-I [Escherichia coli]; hypothetical protein 531770..532720 Neisseria gonorrhoeae FA 1090 3282103 YP_207701.1 CDS NGO0555 NC_002946.2 532940 534433 D Best Blastp Hit: gb|AAF40758.1| (AE002388) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 532940..534433 Neisseria gonorrhoeae FA 1090 3282453 YP_207702.1 CDS aspA NC_002946.2 534501 535898 R catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase complement(534501..535898) Neisseria gonorrhoeae FA 1090 3282149 YP_207703.1 CDS NGO0557 NC_002946.2 535924 536112 R hypothetical protein complement(535924..536112) Neisseria gonorrhoeae FA 1090 3282455 YP_207704.1 CDS NGO0558 NC_002946.2 536176 536736 R Best Blastp Hit: pir||D81130 conserved hypothetical protein NMB1030 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226269|gb|AAF41429.1| (AE002453) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(536176..536736) Neisseria gonorrhoeae FA 1090 3282459 YP_207705.1 CDS NGO0559 NC_002946.2 536937 537590 D Best Blastp Hit: possibly phase variable - 10A residue homopolymer repeat in the coding sequence (ON); IS1016 transposase 536937..537590 Neisseria gonorrhoeae FA 1090 3282463 YP_207706.1 CDS NGO0561 NC_002946.2 540134 541684 D Best Blastp Hit: gb|AAF41720.1| (AE002483) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 540134..541684 Neisseria gonorrhoeae FA 1090 3282165 YP_207707.1 CDS NGO0562 NC_002946.2 542108 543892 R Best Blastp Hit: gb|AAF41719.1| (AE002482) pyruvate dehydrogenase, E3 component, lipoamide dehydrogenase [Neisseria meningitidis MC58]; COG1249 Dihydrolipoamide dehydrogenase/glutathione; dihydrolipoamide dehydrogenase complement(542108..543892) Neisseria gonorrhoeae FA 1090 3282471 YP_207708.1 CDS NGO0563 NC_002946.2 543910 544200 R Best Blastp Hit: pir||G81094 hypothetical protein NMB1343 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226587|gb|AAF41718.1| (AE002482) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(543910..544200) Neisseria gonorrhoeae FA 1090 3282906 YP_207709.1 CDS NGO0564 NC_002946.2 544445 546034 R Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; dihydrolipoamide acetyltransferase complement(544445..546034) Neisseria gonorrhoeae FA 1090 3282469 YP_207710.1 CDS aceE NC_002946.2 546184 548847 R E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 complement(546184..548847) Neisseria gonorrhoeae FA 1090 3282501 YP_207711.1 CDS NGO0566 NC_002946.2 549544 551256 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 549544..551256 Neisseria gonorrhoeae FA 1090 3282489 YP_207712.1 CDS NGO0567 NC_002946.2 551319 551975 D Best Blastp Hit: pir||B81094 isomerase, probable NMB1338 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226582|gb|AAF41713.1| (AE002482) isomerase, [Neisseria meningitidis MC58]; COG0179 2-keto-4-pentenoate; hydrolase 551319..551975 Neisseria gonorrhoeae FA 1090 3282504 YP_207713.1 CDS NGO0568 NC_002946.2 551985 552440 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(551985..552440) Neisseria gonorrhoeae FA 1090 3282493 YP_207714.1 CDS NGO0569 NC_002946.2 552433 552981 R Best Blastp Hit: gb|AAF41711.1| (AE002482) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1678 Uncharacterized ACR; hypothetical protein complement(552433..552981) Neisseria gonorrhoeae FA 1090 3282197 YP_207715.1 CDS NGO0570 NC_002946.2 552983 553543 R Best Blastp Hit: emb|CAB84776.1| (AL162756) hypothetical lipoprotein [Neisseria meningitidis]; hypothetical protein complement(552983..553543) Neisseria gonorrhoeae FA 1090 3282519 YP_207716.1 CDS NGO0571 NC_002946.2 553869 555665 D Best Blastp Hit: possibly phase variable - 9A residue homopolymer repeat in the coding sequence (ON); COG0739 Membrane proteins related to; hypothetical protein 553869..555665 Neisseria gonorrhoeae FA 1090 3282528 YP_207717.1 CDS NGO0572 NC_002946.2 555792 557267 D Best Blastp Hit: pir||E81846 probable carboxy-terminal processing proteinase NMA1546 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380187|emb|CAB84773.1| (AL162756) carboxy-terminal processing protease [Neisseria meningitidis]; COG0793 Periplasmic protease; carboxy-terminal processing protease 555792..557267 Neisseria gonorrhoeae FA 1090 3282525 YP_207718.1 CDS NGO0573 NC_002946.2 557597 559624 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 557597..559624 Neisseria gonorrhoeae FA 1090 3282242 YP_207719.1 CDS NGO0574 NC_002946.2 559802 560560 R Best Blastp Hit: sp|Q50940|CAH_NEIGO carbonic anhydrase precursor (carbonate dehydratase) >gi|1841441|emb|CAA72038.1| (Y11152) carbonic anhydrase [Neisseria gonorrhoeae]; Cah complement(559802..560560) Neisseria gonorrhoeae FA 1090 3282155 YP_207720.1 CDS trmB NC_002946.2 561640 562356 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(561640..562356) Neisseria gonorrhoeae FA 1090 3282905 YP_207721.1 CDS uvrC NC_002946.2 564000 565886 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(564000..565886) Neisseria gonorrhoeae FA 1090 3282904 YP_207722.1 CDS NGO0579 NC_002946.2 565941 568118 R Best Blastp Hit: pir||F81845 probable cation-transporting ATPase NMA1539 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380180|emb|CAB84766.1| (AL162756) cation-transporting ATPase [Neisseria meningitidis]; COG2217 Cation transport ATPases; transport ATPase complement(565941..568118) Neisseria gonorrhoeae FA 1090 3282903 YP_207723.1 CDS NGO0580 NC_002946.2 568257 569207 D Best Blastp Hit: pir||C81097 thioredoxin reductase NMB1324 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226566|gb|AAF41699.1| (AE002480) thioredoxin reductase [Neisseria meningitidis MC58]; COG0492 Thioredoxin reductase/alkyl; thioredoxin reductase 568257..569207 Neisseria gonorrhoeae FA 1090 3282257 YP_207724.1 CDS rpsF NC_002946.2 569363 569731 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 569363..569731 Neisseria gonorrhoeae FA 1090 3282311 YP_207725.1 CDS NGO0582 NC_002946.2 569732 570034 D Best Blastp Hit: pir||A81097 primosomal replication protein n, probable NMB1322 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226564|gb|AAF41697.1| (AE002480) primosomal replication protein n, [Neisseria meningitidis MC58]; PriB 569732..570034 Neisseria gonorrhoeae FA 1090 3282384 YP_207726.1 CDS rpsR NC_002946.2 570041 570271 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 570041..570271 Neisseria gonorrhoeae FA 1090 3283073 YP_207727.1 CDS rplI NC_002946.2 570288 570740 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 570288..570740 Neisseria gonorrhoeae FA 1090 3282246 YP_207728.1 CDS NGO0585 NC_002946.2 571363 572169 R Best Blastp Hit: emb|CAB84760.1| (AL162756) conserved hypothetical integral membrane protein [Neisseria meningitidis]; COG0730 Predicted permeases; hypothetical protein complement(571363..572169) Neisseria gonorrhoeae FA 1090 3282250 YP_207729.1 CDS NGO0586 NC_002946.2 572170 572916 R Best Blastp Hit: pir||E81096 CDPdiacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) NMA1532 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226560|gb|AAF41693.1| (AE002480) CDP-diacylglycerol--serine O-phosphatidyltransferse [Neisseria meningitidis MC58] >gi|7380173|emb|CAB84759.1| (AL162756) phosphatidylserine synthase [Neisseria meningitidis]; COG1183 Phosphatidylserine synthase; phosphatidylserine synthase complement(572170..572916) Neisseria gonorrhoeae FA 1090 3282297 YP_207730.1 CDS NGO0587 NC_002946.2 572971 573243 R Best Blastp Hit: gb|AAF41692.1| (AE002480) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(572971..573243) Neisseria gonorrhoeae FA 1090 3282226 YP_207731.1 CDS NGO0588 NC_002946.2 573500 573982 D Best Blastp Hit: pir||E81844 hypothetical protein NMA1529 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380171|emb|CAB84757.1| (AL162756) hypothetical protein [Neisseria meningitidis]; hypothetical protein 573500..573982 Neisseria gonorrhoeae FA 1090 3282245 YP_207732.1 CDS NGO0589 NC_002946.2 574029 575240 R Best Blastp Hit: pir||B81096 uracil permease NMB1315 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226557|gb|AAF41690.1| (AE002480) uracil permease [Neisseria meningitidis MC58]; COG2233 Xanthine/uracil permeases; ABC transporter permease complement(574029..575240) Neisseria gonorrhoeae FA 1090 3282460 YP_207733.1 CDS NGO0590 NC_002946.2 575669 577900 D Best Blastp Hit: pir||A81096 cell division protein FtsK NMB1314 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226556|gb|AAF41689.1| (AE002480) cell division protein FtsK [Neisseria meningitidis MC58]; COG1674 DNA segregation ATPase FtsK/SpoIIIE and; ftsK-like cell division/stress response protein 575669..577900 Neisseria gonorrhoeae FA 1090 3281375 YP_207734.1 CDS tig NC_002946.2 578772 580085 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 578772..580085 Neisseria gonorrhoeae FA 1090 3282902 YP_207735.1 CDS clpP NC_002946.2 580181 580795 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 580181..580795 Neisseria gonorrhoeae FA 1090 3282554 YP_207736.1 CDS ispG NC_002946.2 580849 582114 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(580849..582114) Neisseria gonorrhoeae FA 1090 3281243 YP_207737.1 CDS NGO0595 NC_002946.2 582130 582891 R Best Blastp Hit: gb|AAF41684.1| (AE002479) fimbrial biogenesis and twitching motility protein, [Neisseria meningitidis MC58]; hypothetical protein complement(582130..582891) Neisseria gonorrhoeae FA 1090 3281181 YP_207738.1 CDS NGO0596 NC_002946.2 582894 583988 R Best Blastp Hit: pir||B81098 conserved hypothetical protein NMB1308 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226549|gb|AAF41683.1| (AE002479) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0820 Predicted Fe-S-cluster redox enzyme; hypothetical protein complement(582894..583988) Neisseria gonorrhoeae FA 1090 3281098 YP_207739.1 CDS NGO0597 NC_002946.2 584132 584443 R Best Blastp Hit: pir||A81098 nucleoside diphosphate kinase (EC 2.7.4.6) NMA1521 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226548|gb|AAF41682.1| (AE002479) nucleoside diphosphate kinase [Neisseria meningitidis MC58] >gi|7380163|emb|CAB84749.1| (AL162756) nucleoside diphosphate kinase [Neisseria meningitidis]; COG0105 Nucleoside diphosphate kinase; nucleoside diphosphate kinase complement(584132..584443) Neisseria gonorrhoeae FA 1090 3281283 YP_207740.1 CDS NGO0598 NC_002946.2 584616 585767 R Best Blastp Hit: pir||H81097 probable nucleotide-binding protein NMA1520 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226547|gb|AAF41681.1| (AE002479) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7380162|emb|CAB84748.1| (AL162756) nucleotide-binding protein [Neisseria meningitidis]; COG1485 Predicted ATPase; hypothetical protein complement(584616..585767) Neisseria gonorrhoeae FA 1090 3282552 YP_207741.1 CDS NGO0600 NC_002946.2 586297 587043 R Best Blastp Hit: pir||G81097 esterase, probable NMB1305 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226546|gb|AAF41680.1| (AE002479) esterase, [Neisseria meningitidis MC58]; COG0627 Predicted esterase; esterase D complement(586297..587043) Neisseria gonorrhoeae FA 1090 3281115 YP_207742.1 CDS NGO0602 NC_002946.2 588393 588800 D Best Blastp Hit: pir||E81097 transcription regulator, MerR family NMB1303 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226544|gb|AAF41678.1| (AE002479) transcriptional regulator, MerR family [Neisseria meningitidis MC58] >gi|7380159|emb|CAB84745.1| (AL162756) transcriptional regulator [Neisseria meningitidis]; COG0789 Predicted transcriptional regulators; MerR family transcriptional regulator 588393..588800 Neisseria gonorrhoeae FA 1090 3281382 YP_207743.1 CDS ihfB NC_002946.2 588996 589292 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta complement(588996..589292) Neisseria gonorrhoeae FA 1090 3281436 YP_207744.1 CDS rpsA NC_002946.2 589321 591006 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(589321..591006) Neisseria gonorrhoeae FA 1090 3281472 YP_207745.1 CDS NGO0605 NC_002946.2 591159 591815 R Best Blastp Hit: sp|P57065|KCY_NEIMB cytidylate kinase (CK) (cytidine monophosphate kinase) (CMP KINASE) >gi|11279481|pir||F81099 cytidylate kinase NMB1300 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226540|gb|AAF41675.1| (AE002478) cytidylate kinase [Neisseria meningitidis MC58]; COG0283 Cytidylate kinase; cytidylate kinase complement(591159..591815) Neisseria gonorrhoeae FA 1090 3281500 YP_207746.1 CDS NGO0606 NC_002946.2 592048 593418 R Best Blastp Hit: sp|P45320|YG90_HAEIN hypothetical sodium-dependent transporter HI1690 >gi|1075054|pir||H64136 neurotransmitter transport protein homolog - Haemophilus influenzae (strain Rd KW20) >gi|1574543|gb|AAC23336.1| (U32842) sodium-dependent transporter [Haemophilus influenzae Rd]; COG0733 Sodium-dependent transporters (SNF family); sodium-dependent transport protein complement(592048..593418) Neisseria gonorrhoeae FA 1090 3281535 YP_207747.1 CDS NGO0607 NC_002946.2 593892 594584 R Best Blastp Hit: gb|AAF41674.1| (AE002478) ribosomal small subunit pseudouridine synthase A [Neisseria meningitidis MC58] >gi|7380155|emb|CAB84740.1| (AL162756) ribosomal small subunit pseudouridine synthase [Neisseria meningitidis]; COG1187 Predicted pseudouridylate synthase 1; hypothetical protein complement(593892..594584) Neisseria gonorrhoeae FA 1090 3281619 YP_207748.1 CDS NGO0608 NC_002946.2 594652 596628 R Best Blastp Hit: pir||D81842 probable membrane bound murein transglycosylase NMA1507 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380154|emb|CAB84739.1| (AL162756) membrane bound murein transglycosylase [Neisseria meningitidis]; COG0741 Soluble lytic murein transglycosylase and; murein transglycosylase/nitrite reductase transcriptional regulator complement(594652..596628) Neisseria gonorrhoeae FA 1090 3281605 YP_207749.1 CDS NGO0609 NC_002946.2 596807 597472 D Best Blastp Hit: pir||C81842 hypothetical protein NMA1506 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380153|emb|CAB84738.1| (AL162756) hypothetical protein [Neisseria meningitidis]; COG0500 SAM-dependent methyltransferases; hypothetical protein 596807..597472 Neisseria gonorrhoeae FA 1090 3281753 YP_207750.1 CDS NGO0610 NC_002946.2 597525 598352 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 597525..598352 Neisseria gonorrhoeae FA 1090 3281724 YP_207751.1 CDS NGO0611 NC_002946.2 598440 599207 D Best Blastp Hit: sp|Q59601|PLSC_NEIGO 1-acyl-SN-glycerol-3-phosphate acyltransferase (1-AGP acyltransferase) (1-AGPAT) (lysophosphatidic acid acyltransferase) (LPAAT) >gi|2120869|pir||S70545 1-acylglycerol-3-phosphate O-acyltransferase (EC 2.3.1.51) - Neisseria gonorrhoeae >gi|972976|gb|AAB40877.1| (U21806) 1-acyl-sn-glycerol-3-phosphate acyltransferase [Neisseria gonorrhoeae]; COG0204 1-acyl-sn-glycerol-3-phosphate; 1-acyl-SN-glycerol-3-phosphate acyltransferase 598440..599207 Neisseria gonorrhoeae FA 1090 3281750 YP_207752.1 CDS NGO0613 NC_002946.2 599470 599781 R Best Blastp Hit: pir||H81098 hypothetical protein NMB1293 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226534|gb|AAF41669.1| (AE002478) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(599470..599781) Neisseria gonorrhoeae FA 1090 3281192 YP_207753.1 CDS NGO0614 NC_002946.2 600312 602591 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 600312..602591 Neisseria gonorrhoeae FA 1090 3281267 YP_207754.2 CDS nrdB NC_002946.2 602904 604037 D B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 602904..604037 Neisseria gonorrhoeae FA 1090 3282900 YP_207755.1 CDS NGO6151 NC_002946.2 604158 604448 D hypothetical protein 604158..604448 Neisseria gonorrhoeae FA 1090 3281078 YP_207756.1 CDS NGO0616 NC_002946.2 604489 604767 R Best Blastp Hit: gb|AAF41662.1| (AE002477) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7380144|emb|CAB84729.1| (AL162756) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(604489..604767) Neisseria gonorrhoeae FA 1090 3281228 YP_207757.1 CDS eno NC_002946.2 604935 606221 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(604935..606221) Neisseria gonorrhoeae FA 1090 3282141 YP_207758.1 CDS NGO0618 NC_002946.2 606268 606708 R Best Blastp Hit: pir||C81100 hypothetical protein NMB1284 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226524|gb|AAF41660.1| (AE002477) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(606268..606708) Neisseria gonorrhoeae FA 1090 3282901 YP_207759.1 CDS NGO0619 NC_002946.2 606723 607565 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(606723..607565) Neisseria gonorrhoeae FA 1090 3282895 YP_207760.1 CDS NGO0620 NC_002946.2 607587 607970 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(607587..607970) Neisseria gonorrhoeae FA 1090 3282899 YP_207761.1 CDS NGO0621 NC_002946.2 608132 608434 R hypothetical protein complement(608132..608434) Neisseria gonorrhoeae FA 1090 3282898 YP_207762.1 CDS NGO0622 NC_002946.2 608468 608587 R hypothetical protein complement(608468..608587) Neisseria gonorrhoeae FA 1090 3282897 YP_207763.1 CDS NGO0623 NC_002946.2 608660 612364 R Best Blastp Hit: pir||A81102 transcription-repair coupling factor NMB1281 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226520|gb|AAF41657.1| (AE002476) transcription-repair coupling factor [Neisseria meningitidis MC58]; COG1197 Transcription-repair coupling factor -; transcription-repair coupling factor complement(608660..612364) Neisseria gonorrhoeae FA 1090 3282896 YP_207764.1 CDS NGO0624 NC_002946.2 612423 613976 D Best Blastp Hit: emb|CAB84723.1| (AL162756) oxidoreductase [Neisseria meningitidis]; oxidoreductase 612423..613976 Neisseria gonorrhoeae FA 1090 3282888 YP_207765.1 CDS NGO0625 NC_002946.2 613967 614215 D Best Blastp Hit: emb|CAB84722.1| (AL162756) hypothetical protein NMA1489 [Neisseria meningitidis]; hypothetical protein 613967..614215 Neisseria gonorrhoeae FA 1090 3282894 YP_207766.1 CDS NGO0626 NC_002946.2 614124 615215 D Best Blastp Hit: pir||G81101 membrane-bound lytic murein transglycosylase B, probable NMB1279 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226518|gb|AAF41655.1| (AE002476) membrane-bound lytic murein transglycosylase B, [Neisseria meningitidis MC58]; murein hydrolase 614124..615215 Neisseria gonorrhoeae FA 1090 3282893 YP_207767.1 CDS NGO0627 NC_002946.2 615338 617344 R Best Blastp Hit: pir||F81101 site-specific recombinase NMB1278 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226517|gb|AAF41654.1| (AE002476) site-specific recombinase [Neisseria meningitidis MC58]; site-specific recombinase complement(615338..617344) Neisseria gonorrhoeae FA 1090 3282890 YP_207768.1 CDS NGO0628 NC_002946.2 617567 618220 D Best Blastp Hit: pir||G81087 IS1016C2 transposase NMB1411 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226649|gb|AAF41773.1| (AE002489) IS1016C2 transposase [Neisseria meningitidis MC58]; IS1016 transposase 617567..618220 Neisseria gonorrhoeae FA 1090 3282892 YP_207769.1 CDS NGO0629 NC_002946.2 618439 621189 R Best Blastp Hit: sp|P48371|GYRA_NEIGO DNA gyrase subunit A >gi|2120873|pir||S60779 DNA gyrase chain A - Neisseria gonorrhoeae >gi|529408|gb|AAA82128.1| (U08817) DNA gyrase subunit A [Neisseria gonorrhoeae]; COG0188 DNA gyrase (topoisomerase II) A subunit; DNA gyrase subunit A complement(618439..621189) Neisseria gonorrhoeae FA 1090 3282891 YP_207770.1 CDS NGO0630 NC_002946.2 621287 621640 R Best Blastp Hit: gb|AAF62332.1| (AE002486) chaperone protein HscB [Neisseria meningitidis MC58]; COG1076 DnaJ-domain-containing proteins 1; chaperone protein HscB complement(621287..621640) Neisseria gonorrhoeae FA 1090 3281249 YP_207771.1 CDS NGO0631 NC_002946.2 621689 621838 D hypothetical protein 621689..621838 Neisseria gonorrhoeae FA 1090 3281101 YP_207772.1 CDS NGO0632 NC_002946.2 622050 622370 R Best Blastp Hit: pir||H81089 HesB/YadR/YfhF family protein NMB1381 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226622|gb|AAF41749.1| (AE002486) HesB/YadR/YfhF family protein [Neisseria meningitidis MC58]; COG0316 Uncharacterized ACR, HesB/YadR/YfhF family; hypothetical protein complement(622050..622370) Neisseria gonorrhoeae FA 1090 3281279 YP_207773.1 CDS NGO0633 NC_002946.2 622457 622843 R Best Blastp Hit: pir||G81852 NifU-like protein NMA1596 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380237|emb|CAB84823.1| (AL162756) NifU-like protein [Neisseria meningitidis]; COG0822 NifU homologs involved in Fe-S cluster; scaffold protein complement(622457..622843) Neisseria gonorrhoeae FA 1090 3281368 YP_207774.1 CDS NGO0635 NC_002946.2 623656 623946 R Best Blastp Hit: pir||I50969 MHC class II beta chain - Melanochromis auratus (fragment) >gi|2147702|pir||I50985 MHC class II beta chain - Melanochromis auratus (fragment) >gi|308982|gb|AAA49352.1| (L17439) Mhc class II beta chain [Melanochromis auratus] >gi|309016|gb|AAA49368.1| (L17463) MHC class II beta chain [Melanochromis auratus]; hypothetical protein complement(623656..623946) Neisseria gonorrhoeae FA 1090 3282889 YP_207775.1 CDS NGO0636 NC_002946.2 623952 625166 R catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase complement(623952..625166) Neisseria gonorrhoeae FA 1090 3281390 YP_207776.1 CDS NGO0637 NC_002946.2 625195 625641 R Best Blastp Hit: sp|Q51134|YF93_NEIMA hypothetical protein NMA1593/NMB1378 precursor >gi|11278638|pir||D81852 conserved hypothetical DNA-binding protein NMA1593 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380234|emb|CAB84820.1| (AL162756) conserved hypothetical DNA-binding protein [Neisseria meningitidis] >gi|7413461|gb|AAF62328.1| (AE002486) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1959 Uncharacterized BCR, YjeB/RRF2 family; hypothetical protein complement(625195..625641) Neisseria gonorrhoeae FA 1090 3281388 YP_207777.1 CDS NGO0638 NC_002946.2 625640 625870 D hypothetical protein 625640..625870 Neisseria gonorrhoeae FA 1090 3281789 YP_207778.1 CDS NGO0639 NC_002946.2 625991 627163 D Best Blastp Hit: pir||C81852 L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) NMA1592 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380233|emb|CAB84819.1| (AL162756) L-lactate dehydrogenase [Neisseria meningitidis]; COG1304 L-lactate dehydrogenase (FMN-dependent) and; L-lactate dehydrogenase 625991..627163 Neisseria gonorrhoeae FA 1090 3281775 YP_207779.1 CDS NGO0640 NC_002946.2 627312 630086 R Best Blastp Hit: gb|AAD02478.1| (AF048762) hypothetical membrane lipoprotein [Neisseria meningitidis]; restriction modification system-R protein; protein RmsR complement(627312..630086) Neisseria gonorrhoeae FA 1090 3281449 YP_207780.1 CDS NGO0641 NC_002946.2 630076 632346 R Best Blastp Hit: possibly phase variable - 37 tandem repeats of CGGT in the coding sequence (ON) and an 8T residue homopolymer repeat in the coding sequence (ON); COG2189 Adenine specific DNA methylase Mod; type III restriction/modification system modification methylase complement(630076..632346) Neisseria gonorrhoeae FA 1090 3281459 YP_207781.1 CDS truB NC_002946.2 632563 633483 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(632563..633483) Neisseria gonorrhoeae FA 1090 3281788 YP_207782.1 CDS NGO0643 NC_002946.2 633541 634086 R Best Blastp Hit: pir||F81851 hypothetical protein NMA1587 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380228|emb|CAB84814.1| (AL162756) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(633541..634086) Neisseria gonorrhoeae FA 1090 3281286 YP_207783.1 CDS rbfA NC_002946.2 634076 634447 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(634076..634447) Neisseria gonorrhoeae FA 1090 3281282 YP_207784.1 CDS clpX NC_002946.2 634630 635874 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 634630..635874 Neisseria gonorrhoeae FA 1090 3281483 YP_207785.1 CDS argD NC_002946.2 635981 637174 R DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase complement(635981..637174) Neisseria gonorrhoeae FA 1090 3281412 YP_207786.1 CDS NGO0647 NC_002946.2 637578 638078 D Best Blastp Hit: pir||G81090 hypothetical protein NMB1370 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226616|gb|AAF41744.1| (AE002485) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 637578..638078 Neisseria gonorrhoeae FA 1090 3281594 YP_207787.1 CDS NGO0648 NC_002946.2 638163 638717 D Best Blastp Hit: pir||F81090 hypothetical protein NMB1369 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226615|gb|AAF41743.1| (AE002485) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 638163..638717 Neisseria gonorrhoeae FA 1090 3281772 YP_207788.1 CDS NGO0649 NC_002946.2 638731 638931 D hypothetical protein 638731..638931 Neisseria gonorrhoeae FA 1090 3281804 YP_207789.1 CDS NGO0650 NC_002946.2 639282 640670 R Best Blastp Hit: gb|AAF41742.1| (AE002485) ATP-dependent RNA helicase, [Neisseria meningitidis MC58]; COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase complement(639282..640670) Neisseria gonorrhoeae FA 1090 3282557 YP_207790.1 CDS NGO0651 NC_002946.2 640881 641945 D Best Blastp Hit: gb|AAF41741.1| (AE002485) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1092 Predicted SAM-dependent methyltransferases; hypothetical protein 640881..641945 Neisseria gonorrhoeae FA 1090 3282561 YP_207791.1 CDS NGO0652 NC_002946.2 641997 642329 R Best Blastp Hit: pir||E81850 thioredoxin I NMA1578 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380219|emb|CAB84805.1| (AL162756) thioredoxin I [Neisseria meningitidis]; COG0526 Thiol-disulfide isomerase and thioredoxins; thioredoxin I complement(641997..642329) Neisseria gonorrhoeae FA 1090 3282200 YP_207792.1 CDS NGO0653 NC_002946.2 642627 643100 D Best Blastp Hit: pir||D81850 hypothetical protein NMA1577 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380218|emb|CAB84804.1| (AL162756) hypothetical protein [Neisseria meningitidis]; hypothetical protein 642627..643100 Neisseria gonorrhoeae FA 1090 3282531 YP_207793.1 CDS NGO0654 NC_002946.2 643171 643992 R Best Blastp Hit: pir||C81850 NAD+ synthase (glutamine-hydrolyzing) (EC 6.3.5.1) NMA1576 [similarity] - Neisseria meningitidis (group A strain Z2491) >gi|7380217|emb|CAB84803.1| (AL162756) NH(3)-dependent NAD synthetase [Neisseria meningitidis]; COG0171 NAD synthase; NH(3)-dependent NAD synthetase complement(643171..643992) Neisseria gonorrhoeae FA 1090 3282142 YP_207794.1 CDS xseA NC_002946.2 644189 645544 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 644189..645544 Neisseria gonorrhoeae FA 1090 3282507 YP_207795.1 CDS NGO0656 NC_002946.2 646046 647587 D Best Blastp Hit: pir||A81850 probable integral membrane transporter NMA1574 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380215|emb|CAB84801.1| (AL162756) integral membrane transporter [Neisseria meningitidis]; COG0477 Permeases; membrane transporter 646046..647587 Neisseria gonorrhoeae FA 1090 3282508 YP_207796.1 CDS NGO0657 NC_002946.2 647646 648698 R Best Blastp Hit: pir||B81092 conserved hypothetical protein NMB1361 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226606|gb|AAF41735.1| (AE002484) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1187 Predicted pseudouridylate synthase 1; hypothetical protein complement(647646..648698) Neisseria gonorrhoeae FA 1090 3282412 YP_207797.1 CDS NGO0658 NC_002946.2 648916 649548 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 648916..649548 Neisseria gonorrhoeae FA 1090 3282467 YP_207798.1 CDS NGO0659 NC_002946.2 649678 650688 R Best Blastp Hit: pir||H81091 probable CDP-6-deoxy-Delta(3,4)-glucoseen reductase (EC 1.3.1.-) NMB1359 [similarity] - Neisseria meningitidis (group B strain MD58) >gi|7226604|gb|AAF41733.1| (AE002484) CDP-6-deoxy-delta-3,4-glucoseen reductase, [Neisseria meningitidis MC58]; COG0543 2-Octaprenylphenol hydroxylase and related; iron/sulfur-binding oxidoreductase complement(649678..650688) Neisseria gonorrhoeae FA 1090 3282454 YP_207799.1 CDS gatB NC_002946.2 650780 652210 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(650780..652210) Neisseria gonorrhoeae FA 1090 3281129 YP_207800.1 CDS NGO0661 NC_002946.2 652253 653185 R Best Blastp Hit: pir||F81091 conserved hypothetical protein NMB1357 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226602|gb|AAF41731.1| (AE002484) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(652253..653185) Neisseria gonorrhoeae FA 1090 3281139 YP_207801.1 CDS gatA NC_002946.2 653182 654627 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(653182..654627) Neisseria gonorrhoeae FA 1090 3282547 YP_207802.1 CDS gatC NC_002946.2 654690 654980 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(654690..654980) Neisseria gonorrhoeae FA 1090 3281108 YP_207803.1 CDS NGO0664 NC_002946.2 655130 655783 D Best Blastp Hit: pir||E81093 conserved hypothetical protein NMB1354 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226598|gb|AAF41728.1| (AE002483) conserved hypothetical protein [Neisseria meningitidis MC58]; COG2095 Integral membrane proteins of the MarC; hypothetical protein 655130..655783 Neisseria gonorrhoeae FA 1090 3282063 YP_207804.1 CDS NGO0665 NC_002946.2 655788 657131 D Best Blastp Hit: pir||D81093 aldehyde dehydrogenase NMB1353 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226597|gb|AAF41727.1| (AE002483) aldehyde dehydrogenase [Neisseria meningitidis MC58]; COG1012 NAD-dependent aldehyde dehydrogenases; aldehyde dehydrogenase 655788..657131 Neisseria gonorrhoeae FA 1090 3282053 YP_207805.1 CDS NGO0666 NC_002946.2 657180 657608 R Best Blastp Hit: pir||C81093 hypothetical protein NMB1352 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226596|gb|AAF41726.1| (AE002483) hypothetical protein [Neisseria meningitidis MC58] >gi|7380205|emb|CAB84791.1| (AL162756) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(657180..657608) Neisseria gonorrhoeae FA 1090 3282058 YP_207806.1 CDS NGO0667 NC_002946.2 657753 657938 R hypothetical protein complement(657753..657938) Neisseria gonorrhoeae FA 1090 3282057 YP_207807.1 CDS NGO0668 NC_002946.2 657954 659210 R Best Blastp Hit: emb|CAB84790.1| (AL162756) SUN-family protein [Neisseria meningitidis]; COG0144 Predicted rRNA methylase; SUN-family protein complement(657954..659210) Neisseria gonorrhoeae FA 1090 3282060 YP_207808.1 CDS NGO0669 NC_002946.2 659246 660115 R Best Blastp Hit: pir||D81848 hypothetical protein NMA1561 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380202|emb|CAB84788.1| (AL162756) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(659246..660115) Neisseria gonorrhoeae FA 1090 3282059 YP_207809.1 CDS NGO0670 NC_002946.2 660156 660971 R Best Blastp Hit: pir||G81092 RNA methylase, probable NMB1348 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226592|gb|AAF41722.1| (AE002483) RNA methylase, [Neisseria meningitidis MC58]; COG0565 rRNA methylase; methylase complement(660156..660971) Neisseria gonorrhoeae FA 1090 3282065 YP_207810.1 CDS NGO0671 NC_002946.2 661215 662000 D Best Blastp Hit: pir||F81092 extragenic suppressor protein SuhB NMB1347 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226591|gb|AAF41721.1| (AE002483) extragenic suppressor protein SuhB [Neisseria meningitidis MC58]; COG0483 Inositol phosphatases; hypothetical protein 661215..662000 Neisseria gonorrhoeae FA 1090 3282051 YP_207811.1 CDS NGO0672 NC_002946.2 662118 662309 D hypothetical protein 662118..662309 Neisseria gonorrhoeae FA 1090 3282033 YP_207812.1 CDS NGO0673 NC_002946.2 662306 662959 D Best Blastp Hit: pir||G81087 IS1016C2 transposase NMB1411 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226649|gb|AAF41773.1| (AE002489) IS1016C2 transposase [Neisseria meningitidis MC58]; IS1016 transposase 662306..662959 Neisseria gonorrhoeae FA 1090 3282049 YP_207813.1 CDS NGO0674 NC_002946.2 662987 664057 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(662987..664057) Neisseria gonorrhoeae FA 1090 3282023 YP_207814.1 CDS NGO0675 NC_002946.2 664091 664822 R Best Blastp Hit: sp|P50183|T2N4_NEILA type II restriction enzyme NLAIV (endonuclease NLAIV) (R.NLAIV) >gi|628599|pir||S43887 restriction endonuclease - Neisseria lactamica >gi|476228|gb|AAA53238.1| (U06074) R.NlaIV [Neisseria lactamica]; type II restriction endonuclease NlaIV complement(664091..664822) Neisseria gonorrhoeae FA 1090 3282048 YP_207815.1 CDS NGO0676 NC_002946.2 664838 666109 R Best Blastp Hit: possibly phase variable - 9A residue homopolymer repeat in the coding sequence (ON); COG0270 Site-specific DNA methylase dcm; DNA modification methylase (N.MgoV) complement(664838..666109) Neisseria gonorrhoeae FA 1090 3282000 YP_207816.1 CDS leuD NC_002946.2 666276 666917 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(666276..666917) Neisseria gonorrhoeae FA 1090 3282001 YP_207817.1 CDS NGO0678 NC_002946.2 666979 667233 R Best Blastp Hit: gb|AAF41434.1| (AE002454) hypothetical protein [Neisseria meningitidis MC58] >gi|7380104|emb|CAB84687.1| (AL162756) lipoprotein [Neisseria meningitidis]; hypothetical protein complement(666979..667233) Neisseria gonorrhoeae FA 1090 3282025 YP_207818.1 CDS NGO0679 NC_002946.2 667328 668737 R dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit complement(667328..668737) Neisseria gonorrhoeae FA 1090 3282485 YP_207819.1 CDS NGO0680 NC_002946.2 669169 670338 D Best Blastp Hit: pir||H81835 probable glutamate--cysteine ligase (EC 6.3.2.2) NMA1449 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380102|emb|CAB84685.1| (AL162756) glutamate--cysteine ligase [Neisseria meningitidis]; hypothetical protein 669169..670338 Neisseria gonorrhoeae FA 1090 3281805 YP_207820.1 CDS radC NC_002946.2 670461 671138 D Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 670461..671138 Neisseria gonorrhoeae FA 1090 3281896 YP_207821.1 CDS NGO0682 NC_002946.2 671211 671936 D Best Blastp Hit: pir||B81129 conserved hypothetical protein NMB1039 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226279|gb|AAF41438.1| (AE002454) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1636 Uncharacterized BCR; hypothetical protein 671211..671936 Neisseria gonorrhoeae FA 1090 3281925 YP_207822.1 CDS NGO0683 NC_002946.2 672088 673368 D Best Blastp Hit: pir||E81835 probable periplasmic protein NMA1446 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380099|emb|CAB84682.1| (AL162756) periplasmic protein [Neisseria meningitidis]; hypothetical protein 672088..673368 Neisseria gonorrhoeae FA 1090 3281810 YP_207823.1 CDS NGO0684 NC_002946.2 673443 674552 D Best Blastp Hit: emb|CAB84681.1| (AL162756) hypothetical protein NMA1445 [Neisseria meningitidis]; COG1159 Predicted GTPases, Era/HflX family; GTP binding protein 673443..674552 Neisseria gonorrhoeae FA 1090 3281914 YP_207824.1 CDS NGO0685 NC_002946.2 674549 677005 D Best Blastp Hit: pir||C81835 probable P-type cation-transporting ATPase NMA1444 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380097|emb|CAB84680.1| (AL162756) P-type cation-transporting ATPase [Neisseria meningitidis]; COG2217 Cation transport ATPases; P-type cation-transporting ATPase 674549..677005 Neisseria gonorrhoeae FA 1090 3281912 YP_207825.1 CDS NGO0686 NC_002946.2 677179 677331 D Best Blastp Hit: gb|AAF41441.1| (AE002455) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 677179..677331 Neisseria gonorrhoeae FA 1090 3281915 YP_207826.1 CDS NGO0687 NC_002946.2 677673 678449 R Best Blastp Hit: gb|AAF41442.1| (AE002455) ferredoxin--NADP reductase [Neisseria meningitidis MC58] >gi|7380095|emb|CAB84678.1| (AL162756) ferredoxin--NADP reductase [Neisseria meningitidis]; COG1018 Flavodoxin reductases (ferredoxin-NADPH; ferredoxin-NADP reductase complement(677673..678449) Neisseria gonorrhoeae FA 1090 3281921 YP_207827.1 CDS NGO0688 NC_002946.2 678637 679431 R Best Blastp Hit: pir||E81127 hypothetical protein NMB1045 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226285|gb|AAF41443.1| (AE002455) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(678637..679431) Neisseria gonorrhoeae FA 1090 3281922 YP_207828.1 CDS NGO0689 NC_002946.2 679478 680887 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(679478..680887) Neisseria gonorrhoeae FA 1090 3281892 YP_207829.1 CDS NGO0690 NC_002946.2 680960 681328 R Best Blastp Hit: pir||F81834 probable lipoprotein NMA1439 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380092|emb|CAB84675.1| (AL162756) lipoprotein [Neisseria meningitidis]; hypothetical protein complement(680960..681328) Neisseria gonorrhoeae FA 1090 3281888 YP_207830.1 CDS NGO0693 NC_002946.2 684226 684741 R Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); hypothetical protein complement(684226..684741) Neisseria gonorrhoeae FA 1090 3281891 YP_207831.1 CDS NGO0694 NC_002946.2 684728 687346 R Best Blastp Hit: sp|P24328|PERT_BORPA pertactin precursor (outer membrane protein P.70) (P.95) >gi|95503|pir||S15204 pertactin - Bordetella parapertussis >gi|39762|emb|CAA38419.1| (X54547) pertactin [Bordetella parapertussis]; hypothetical protein complement(684728..687346) Neisseria gonorrhoeae FA 1090 3281816 YP_207832.1 CDS NGO0696 NC_002946.2 688651 689961 D Best Blastp Hit: pir||E81103 conserved hypothetical protein NMB1258 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226497|gb|AAF41636.1| (AE002474) conserved hypothetical protein [Neisseria meningitidis MC58]; COG2256 Uncharacterized ATPase related to the; recombination factor protein RarA 688651..689961 Neisseria gonorrhoeae FA 1090 3282887 YP_207833.1 CDS NGO0697 NC_002946.2 690060 693086 D Best Blastp Hit: gb|AAG22017.1|AF288038_2 (AF288038) HsdR [Streptococcus thermophilus]; COG0610 Restriction enzymes type I helicase subunits; type I restriction enzyme 690060..693086 Neisseria gonorrhoeae FA 1090 3281879 YP_207834.1 CDS NGO0698 NC_002946.2 693136 693369 D Best Blastp Hit: pir||G81152 probable DNA-binding protein NMA1039 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226065|gb|AAF41242.1| (AE002436) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379741|emb|CAB84308.1| (AL162754) DNA-binding protein [Neisseria meningitidis]; hypothetical protein 693136..693369 Neisseria gonorrhoeae FA 1090 3281806 YP_207835.1 CDS NGO0699 NC_002946.2 693416 694618 D Best Blastp Hit: gb|AAG22014.1|AF288037_3 (AF288037) HsdS [Streptococcus thermophilus]; COG0732 Restriction endonuclease S subunits; hypothetical protein 693416..694618 Neisseria gonorrhoeae FA 1090 3281876 YP_207836.1 CDS NGO0700 NC_002946.2 694611 695171 D Best Blastp Hit: pir||G69096 hypothetical protein MTH1717 - Methanobacterium thermoautotrophicum (strain Delta H) >gi|2622849|gb|AAB86189.1| (AE000928) unknown [Methanobacterium thermoautotrophicum]; hypothetical protein 694611..695171 Neisseria gonorrhoeae FA 1090 3281811 YP_207837.1 CDS NGO0701 NC_002946.2 695182 696024 D hypothetical protein 695182..696024 Neisseria gonorrhoeae FA 1090 3281809 YP_207838.1 CDS NGO0702 NC_002946.2 696091 697692 D Best Blastp Hit: gb|AAG22013.1|AF288037_2 (AF288037) HsdM [Streptococcus thermophilus]; COG0286 Type I restriction-modification system; hypothetical protein 696091..697692 Neisseria gonorrhoeae FA 1090 3281871 YP_207839.1 CDS NGO0703 NC_002946.2 697719 697988 R hypothetical protein complement(697719..697988) Neisseria gonorrhoeae FA 1090 3281983 YP_207840.1 CDS NGO0704 NC_002946.2 698003 699094 R bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein complement(698003..699094) Neisseria gonorrhoeae FA 1090 3281990 YP_207841.1 CDS NGO0709 NC_002946.2 708430 708798 D hypothetical protein 708430..708798 Neisseria gonorrhoeae FA 1090 3281989 YP_207842.1 CDS NGO0710 NC_002946.2 709174 710223 R Best Blastp Hit: gb|AAF41760.1| (AE002488) A/G-specific adenine glycosylase [Neisseria meningitidis MC58]; COG1194 A/G-specific DNA glycosylase; adenine glycosylase complement(709174..710223) Neisseria gonorrhoeae FA 1090 3282032 YP_207843.1 CDS NGO0711 NC_002946.2 710377 711393 D Best Blastp Hit: pir||C81088 alcohol dehydrogenase, zinc-containing NMB1395 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226634|gb|AAF41759.1| (AE002488) alcohol dehydrogenase, zinc-containing [Neisseria meningitidis MC58]; COG1065 Zn-dependent oxidoreductases; alcohol dehydrogenase 710377..711393 Neisseria gonorrhoeae FA 1090 3282111 YP_207844.1 CDS NGO0712 NC_002946.2 711637 711822 D hypothetical protein 711637..711822 Neisseria gonorrhoeae FA 1090 3282886 YP_207845.1 CDS NGO0713 NC_002946.2 712011 712649 R catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase complement(712011..712649) Neisseria gonorrhoeae FA 1090 3282885 YP_207846.1 CDS NGO0714 NC_002946.2 712859 714694 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase complement(712859..714694) Neisseria gonorrhoeae FA 1090 3282884 YP_207847.1 CDS NGO0715 NC_002946.2 715214 716659 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 715214..716659 Neisseria gonorrhoeae FA 1090 3282883 YP_207848.1 CDS NGO0716 NC_002946.2 716811 717506 D Best Blastp Hit: gb|AAF41755.1| (AE002487) oxidoreductase, Sol/DevB family [Neisseria meningitidis MC58] >gi|7380250|emb|CAB84836.1| (AL162756) 6-phosphogluconolactonase [Neisseria meningitidis]; COG0363 Glucosamine-6-phosphate deaminase; hypothetical protein 716811..717506 Neisseria gonorrhoeae FA 1090 3283072 YP_207849.1 CDS glk NC_002946.2 717487 718473 D catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 717487..718473 Neisseria gonorrhoeae FA 1090 3282002 YP_207850.1 CDS NGO0718 NC_002946.2 718522 719370 D Best Blastp Hit: pir||D81089 RpiR/YebK/YfhH family protein NMB1389 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226627|gb|AAF41753.1| (AE002487) RpiR/YebK/YfhH family protein [Neisseria meningitidis MC58] >gi|7380248|emb|CAB84834.1| (AL162756) transcriptional regulator [Neisseria meningitidis]; COG1737 Transcriptional regulators, RpiR family; RpiR family transcriptional regulator 718522..719370 Neisseria gonorrhoeae FA 1090 3282115 YP_207851.1 CDS pgi NC_002946.2 719596 721242 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 719596..721242 Neisseria gonorrhoeae FA 1090 3282106 YP_207852.1 CDS NGO0720 NC_002946.2 721256 721459 D Best Blastp Hit: pir||B81089 hypothetical protein NMB1387 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226625|gb|AAF41751.1| (AE002487) hypothetical protein [Neisseria meningitidis MC58]; phage associated protein 721256..721459 Neisseria gonorrhoeae FA 1090 3282101 YP_207853.1 CDS NGO0721 NC_002946.2 721459 722472 D Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); phage associated protein 721459..722472 Neisseria gonorrhoeae FA 1090 3282084 YP_207854.1 CDS NGO0722 NC_002946.2 722517 722657 D Best Blastp Hit: emb|CAB84831.1| (AL162756) hypothetical protein [Neisseria meningitidis]; phage associated protein 722517..722657 Neisseria gonorrhoeae FA 1090 3282095 YP_207855.1 CDS NGO0723 NC_002946.2 722896 723144 D Best Blastp Hit: emb|CAB84476.1| (AL162755) hypothetical protein NMA1216 [Neisseria meningitidis]; phage associated protein 722896..723144 Neisseria gonorrhoeae FA 1090 3282075 YP_207856.1 CDS NGO0724 NC_002946.2 723086 723208 D Best Blastp Hit: emb|CAB84476.1| (AL162755) hypothetical protein NMA1216 [Neisseria meningitidis]; phage associated protein 723086..723208 Neisseria gonorrhoeae FA 1090 3282009 YP_207857.1 CDS NGO0725 NC_002946.2 723158 723466 R Best Blastp Hit: gb|AAF41506.1| (AE002461) hypothetical protein [Neisseria meningitidis MC58]; phage associated protein complement(723158..723466) Neisseria gonorrhoeae FA 1090 3282090 YP_207858.1 CDS NGO0727 NC_002946.2 726767 727315 R Best Blastp Hit: gi|9634072 P2 J homolog; baseplate or base of tail fibre [Enterobacteria phage 186] >gi|3522880|gb|AAC34162.1| (U32222) P2 J homolog; baseplate or base of tail fibre [Enterobacteria phage 186]; baseplate protein, phage associated protein complement(726767..727315) Neisseria gonorrhoeae FA 1090 3282083 YP_207859.1 CDS NGO0728 NC_002946.2 727336 728238 R Best Blastp Hit: dbj|BAA36244.1| (AB008550) orf17; similar to W gene of P2:baseplate [Pseudomonas aeruginosa phage phi CTX]; phage associated protein complement(727336..728238) Neisseria gonorrhoeae FA 1090 3282092 YP_207860.1 CDS NGO0729 NC_002946.2 728344 728556 R Best Blastp Hit: emb|CAB84478.1| (AL162755) hypothetical protein NMA1218 [Neisseria meningitidis]; phage associated protein complement(728344..728556) Neisseria gonorrhoeae FA 1090 3282071 YP_207861.1 CDS NGO0730 NC_002946.2 728611 729264 R Best Blastp Hit: pir||G81087 IS1016C2 transposase NMB1411 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226649|gb|AAF41773.1| (AE002489) IS1016C2 transposase [Neisseria meningitidis MC58]; IS1016 transposase complement(728611..729264) Neisseria gonorrhoeae FA 1090 3282091 YP_207862.1 CDS NGO0731 NC_002946.2 729286 729570 R Best Blastp Hit: pir||B81890 hypothetical protein NMA1219 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379908|emb|CAB84479.1| (AL162755) hypothetical protein NMA1219 [Neisseria meningitidis]; phage associated protein complement(729286..729570) Neisseria gonorrhoeae FA 1090 3282077 YP_207863.1 CDS NGO0732 NC_002946.2 729607 729870 R Best Blastp Hit: emb|CAB84480.1| (AL162755) hypothetical protein NMA1220 [Neisseria meningitidis]; phage associated protein complement(729607..729870) Neisseria gonorrhoeae FA 1090 3282073 YP_207864.1 CDS NGO0734 NC_002946.2 731378 732157 R Best Blastp Hit: gb|AAF41809.1| (AE002495) ferredoxin--NADP reductase [Neisseria meningitidis MC58]; COG1018 Flavodoxin reductases (ferredoxin-NADPH; oxidoreductase complement(731378..732157) Neisseria gonorrhoeae FA 1090 3282175 YP_207865.1 CDS NGO0735 NC_002946.2 732156 732314 D hypothetical protein 732156..732314 Neisseria gonorrhoeae FA 1090 3282176 YP_207866.1 CDS NGO0736 NC_002946.2 732449 732745 R Best Blastp Hit: gb|AAF42108.1| (AE002526) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(732449..732745) Neisseria gonorrhoeae FA 1090 3282882 YP_207867.1 CDS NGO0738 NC_002946.2 733057 734115 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 733057..734115 Neisseria gonorrhoeae FA 1090 3281904 YP_207868.1 CDS NGO0739 NC_002946.2 734185 736200 R Best Blastp Hit: possibly phase variable - two 8A residue homopolymer repeats in the coding sequence (ON); COG0210 Superfamily I DNA and RNA helicases; ATP-dependent DNA helicase complement(734185..736200) Neisseria gonorrhoeae FA 1090 3281848 YP_207869.1 CDS aroD NC_002946.2 736220 736984 R catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase complement(736220..736984) Neisseria gonorrhoeae FA 1090 3281808 YP_207870.1 CDS recA NC_002946.2 737184 738230 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 737184..738230 Neisseria gonorrhoeae FA 1090 3281893 YP_207871.1 CDS NGO0742 NC_002946.2 738883 739218 R Best Blastp Hit: pir||E81082 conserved hypothetical protein NMB1444 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226685|gb|AAF41804.1| (AE002494) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0718 Uncharacterized BCR, YbaB family; hypothetical protein complement(738883..739218) Neisseria gonorrhoeae FA 1090 3281843 YP_207872.1 CDS NGO0743 NC_002946.2 739299 741422 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau complement(739299..741422) Neisseria gonorrhoeae FA 1090 3281850 YP_207873.1 CDS mutL NC_002946.2 741517 743493 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(741517..743493) Neisseria gonorrhoeae FA 1090 3282588 YP_207874.1 CDS NGO0745 NC_002946.2 743637 743822 D Best Blastp Hit: emb|CAB84882.1| (AL162756) hypothetical protein [Neisseria meningitidis]; hypothetical protein 743637..743822 Neisseria gonorrhoeae FA 1090 3282458 YP_207875.1 CDS NGO0746 NC_002946.2 743833 744501 D Best Blastp Hit: pir||A81860 probable methyltransferase NMA1653 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380295|emb|CAB84881.1| (AL162756) methyltransferase [Neisseria meningitidis]; COG0500 SAM-dependent methyltransferases; O-methyltransferase 743833..744501 Neisseria gonorrhoeae FA 1090 3282607 YP_207876.1 CDS NGO0747 NC_002946.2 744501 745214 D Best Blastp Hit: pir||H81083 hypothetical protein NMB1440 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226681|gb|AAF41801.1| (AE002493) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 744501..745214 Neisseria gonorrhoeae FA 1090 3281461 YP_207877.1 CDS NGO0748 NC_002946.2 745262 745747 D Best Blastp Hit: pir||G81083 phosphoribosylaminoimidazole carboxylase, catalytic chain NMB1439 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226680|gb|AAF41800.1| (AE002493) phosphoribosylaminoimidazole carboxylase, catalytic subunit [Neisseria meningitidis MC58]; COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR); phosphoribosylaminoimidazole carboxylase catalytic subunit 745262..745747 Neisseria gonorrhoeae FA 1090 3282594 YP_207878.1 CDS NGO0751 NC_002946.2 747669 748577 D Best Blastp Hit: emb|CAC03614.1| (AJ272538) hypothetical protein [Kluyvera ascorbata]; hypothetical protein 747669..748577 Neisseria gonorrhoeae FA 1090 3282603 YP_207879.1 CDS NGO0752 NC_002946.2 748733 749389 R Best Blastp Hit: pir||C81104 transcription regulator, LuxR family NMB1250 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226490|gb|AAF41630.1| (AE002473) transcriptional regulator, LuxR family [Neisseria meningitidis MC58] >gi|7380078|emb|CAB84659.1| (AL162755) two-component system response regulator [Neisseria meningitidis]; COG2197 Response regulators consisting of a; nitrite/nitrate two-component system transcriptional response regulator; NarL/NarP complement(748733..749389) Neisseria gonorrhoeae FA 1090 3282599 YP_207880.1 CDS NGO0753 NC_002946.2 749386 751155 R Best Blastp Hit: pir||B81104 nitrate/nitrite sensor protein (EC 2.7.3.-) NMB1249 [similarity] - Neisseria meningitidis (group B strain MD58) >gi|7226489|gb|AAF41629.1| (AE002473) nitrate/nitrite sensory protein NarX, [Neisseria meningitidis MC58]; COG0642 Sensory transduction histidine kinases; nitrite/nitrate two-component system sensor kinase; NarX/NarQ complement(749386..751155) Neisseria gonorrhoeae FA 1090 3282610 YP_207881.1 CDS NGO0754 NC_002946.2 751362 751976 D Best Blastp Hit: emb|CAB84657.1| (AL162755) molybdopterin-guanine dinucleotide biosynthesis protein A [Neisseria meningitidis]; COG0746 Molybdopterin-guanine dinucleotide; molybdopterin-guanine dinucleotide biosynthesis protein 751362..751976 Neisseria gonorrhoeae FA 1090 3282496 YP_207882.2 CDS NGO0755 NC_002946.2 752139 752756 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 752139..752756 Neisseria gonorrhoeae FA 1090 3282502 YP_207883.1 CDS NGO0756 NC_002946.2 752764 753627 D Best Blastp Hit: pir||H81910 hypothetical protein NMA1415 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380074|emb|CAB84655.1| (AL162755) hypothetical protein NMA1415 [Neisseria meningitidis]; hypothetical protein 752764..753627 Neisseria gonorrhoeae FA 1090 3282484 YP_207884.1 CDS NGO0757 NC_002946.2 753640 754074 R Best Blastp Hit: emb|CAB84654.1| (AL162755) periplasmic protein [Neisseria meningitidis]; hypothetical protein complement(753640..754074) Neisseria gonorrhoeae FA 1090 3281881 YP_207885.1 CDS NGO0758 NC_002946.2 754220 754912 D Best Blastp Hit: pir||A81106 ribulose-phosphate 3-epimerase NMB1244 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226484|gb|AAF41625.1| (AE002472) ribulose-phosphate 3-epimerase [Neisseria meningitidis MC58]; COG0036 Pentose-5-phosphate-3-epimerase; ribulose-phosphate 3-epimerase 754220..754912 Neisseria gonorrhoeae FA 1090 3281868 YP_207886.1 CDS NGO0759 NC_002946.2 755001 755147 R hypothetical protein complement(755001..755147) Neisseria gonorrhoeae FA 1090 3281973 YP_207887.1 CDS ruvB NC_002946.2 755151 756182 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(755151..756182) Neisseria gonorrhoeae FA 1090 3282478 YP_207888.1 CDS NGO0761 NC_002946.2 756266 756574 R Best Blastp Hit: pir||G81105 hypothetical protein NMB1242 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226482|gb|AAF41623.1| (AE002472) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(756266..756574) Neisseria gonorrhoeae FA 1090 3282482 YP_207889.1 CDS NGO0762 NC_002946.2 756606 756746 D hypothetical protein 756606..756746 Neisseria gonorrhoeae FA 1090 3282474 YP_207890.1 CDS cca NC_002946.2 756992 758224 R catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase complement(756992..758224) Neisseria gonorrhoeae FA 1090 3283071 YP_207891.1 CDS NGO0764 NC_002946.2 758303 759931 R Best Blastp Hit: gb|AAF41621.1| (AE002472) ABC transporter ATP-binding protein [Neisseria meningitidis MC58]; COG0488 ATPase components of ABC transporters with; ABC transporter ATP-binding protein complement(758303..759931) Neisseria gonorrhoeae FA 1090 3282480 YP_207892.1 CDS NGO0765 NC_002946.2 760081 760455 D Best Blastp Hit: gb|AAF41620.1| (AE002472) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1393 Arsenate reductase, E.coli type; hypothetical protein 760081..760455 Neisseria gonorrhoeae FA 1090 3282343 YP_207893.1 CDS NGO0766 NC_002946.2 760504 762042 D Best Blastp Hit: gb|AAF41619.1| (AE002472) peptidyl-prolyl cis-trans isomerase-related protein [Neisseria meningitidis MC58]; COG0760 Parvulin-like peptidyl-prolyl isomerase; peptidyl-prolyl cis-trans isomerase 760504..762042 Neisseria gonorrhoeae FA 1090 3282473 YP_207894.1 CDS recR NC_002946.2 762109 762726 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 762109..762726 Neisseria gonorrhoeae FA 1090 3282500 YP_207895.1 CDS NGO0768 NC_002946.2 762907 763158 R hypothetical protein complement(762907..763158) Neisseria gonorrhoeae FA 1090 3282881 YP_207896.1 CDS NGO0769 NC_002946.2 763287 764534 D Best Blastp Hit: sp|P57062|LOLC_NEIMB lipoprotein releasing system transmembrane protein LolC >gi|11279734|pir||D81107 conserved hypothetical protein NMB1235 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226474|gb|AAF41616.1| (AE002471) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0577 Predicted permease; lipoprotein releasing system transmembrane protein 763287..764534 Neisseria gonorrhoeae FA 1090 3282005 YP_207897.1 CDS NGO0770 NC_002946.2 764527 765222 D Best Blastp Hit: sp|P57031|LOLD_NEIMB lipoprotein releasing system ATP-binding protein LolD >gi|11277321|pir||C81107 ABC transporter ATP-binding protein NMB1234 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226473|gb|AAF41615.1| (AE002471) ABC transporter ATP-binding protein [Neisseria meningitidis MC58]; COG1136 ABC-type (unclassified) transport system; hypothetical protein 764527..765222 Neisseria gonorrhoeae FA 1090 3282041 YP_207898.1 CDS NGO0771 NC_002946.2 765289 767034 D Best Blastp Hit: gb|AAC14132.1| (AF058330) RecD [Neisseria gonorrhoeae]; COG0507 ATP-dependent exoDNAse (exonuclease V); exodeoxyribonuclease V subunit alpha 765289..767034 Neisseria gonorrhoeae FA 1090 3282027 YP_207899.1 CDS NGO0773 NC_002946.2 767722 768723 D Best Blastp Hit: gb|AAC82509.1| (U65994) pilin gene inverting protein homolog PivNG [Neisseria gonorrhoeae]; invertase related gene 1 767722..768723 Neisseria gonorrhoeae FA 1090 3282015 YP_207900.1 CDS NGO0774 NC_002946.2 768871 769440 D hypothetical protein 768871..769440 Neisseria gonorrhoeae FA 1090 3282020 YP_207901.1 CDS NGO0775 NC_002946.2 769563 772025 D Best Blastp Hit: pir||H81106 ATP-dependent proteinase La NMB1231 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226470|gb|AAF41612.1| (AE002471) ATP-dependent protease La [Neisseria meningitidis MC58]; COG0466 ATP-dependent Lon protease, bacterial type; hypothetical protein 769563..772025 Neisseria gonorrhoeae FA 1090 3281944 YP_207902.1 CDS NGO0776 NC_002946.2 772015 772605 R hypothetical protein complement(772015..772605) Neisseria gonorrhoeae FA 1090 3281985 YP_207903.1 CDS NGO0777 NC_002946.2 772207 772476 D Best Blastp Hit: pir||G81106 DNA-binding protein HU-beta NMB1230 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226469|gb|AAF41611.1| (AE002471) DNA-binding protein HU-beta [Neisseria meningitidis MC58] >gi|7380057|emb|CAB84638.1| (AL162755) DNA-binding protein [Neisseria meningitidis]; COG0776 Histone-like DNA-binding protein; protein DbhA; DNA-binding protein Hu 772207..772476 Neisseria gonorrhoeae FA 1090 3281874 YP_207904.1 CDS NGO0778 NC_002946.2 772652 773086 R Best Blastp Hit: pir||F81908 probable membrane protein NMA1396 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380056|emb|CAB84637.1| (AL162755) membrane protein [Neisseria meningitidis]; hypothetical protein complement(772652..773086) Neisseria gonorrhoeae FA 1090 3281948 YP_207905.1 CDS NGO0779 NC_002946.2 773079 774386 R catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase complement(773079..774386) Neisseria gonorrhoeae FA 1090 3281861 YP_207906.1 CDS NGO0780 NC_002946.2 774582 774953 D Best Blastp Hit: pir||D81108 conserved hypothetical protein NMB1227 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226465|gb|AAF41608.1| (AE002470) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 774582..774953 Neisseria gonorrhoeae FA 1090 3281841 YP_207907.1 CDS NGO0781 NC_002946.2 775030 776952 D Best Blastp Hit: gb|AAF41607.1| (AE002470) ABC transporter ATP-binding protein [Neisseria meningitidis MC58]; COG0488 ATPase components of ABC transporters with; ABC transporter ATP-binding protein 775030..776952 Neisseria gonorrhoeae FA 1090 3282192 YP_207908.1 CDS NGO0782 NC_002946.2 776978 777334 D Best Blastp Hit: pir||C81908 probable periplasmic protein NMA1391 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380053|emb|CAB84633.1| (AL162755) periplasmic protein [Neisseria meningitidis]; hypothetical protein 776978..777334 Neisseria gonorrhoeae FA 1090 3281913 YP_207909.1 CDS NGO0783 NC_002946.2 777425 777937 D Best Blastp Hit: pir||B81108 hypothetical protein NMB1225 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226463|gb|AAF41606.1| (AE002470) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 777425..777937 Neisseria gonorrhoeae FA 1090 3281943 YP_207910.1 CDS NGO0784 NC_002946.2 777985 778161 D hypothetical protein 777985..778161 Neisseria gonorrhoeae FA 1090 3281903 YP_207911.1 CDS NGO0785 NC_002946.2 778408 778830 D hypothetical protein 778408..778830 Neisseria gonorrhoeae FA 1090 3281960 YP_207912.1 CDS NGO0786 NC_002946.2 778867 779526 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(778867..779526) Neisseria gonorrhoeae FA 1090 3281984 YP_207913.1 CDS NGO0787 NC_002946.2 779607 780014 D Best Blastp Hit: pir||A81908 probable membrane protein NMA1383 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380051|emb|CAB84629.1| (AL162755) membrane protein [Neisseria meningitidis]; hypothetical protein 779607..780014 Neisseria gonorrhoeae FA 1090 3281995 YP_207914.1 CDS NGO0788 NC_002946.2 780029 780976 D Best Blastp Hit: gb|AAF44771.1|AF235154_1 (AF235154) GNA1220 [Neisseria gonorrhoeae] >gi|7274434|gb|AAF44772.1|AF235155_1 (AF235155) GNA1220 [Neisseria gonorrhoeae] >gi|7274436|gb|AAF44773.1|AF235156_1 (AF235156) GNA1220 [Neisseria gonorrhoeae]; COG0330 Membrane protease subunits; genome-derived Neisseria antigen 1220 780029..780976 Neisseria gonorrhoeae FA 1090 3281955 YP_207915.1 CDS NGO0789 NC_002946.2 781083 782153 R Best Blastp Hit: gb|AAF41601.1| (AE002470) transporter [Neisseria meningitidis MC58]; COG0628 Predicted permease; hypothetical protein complement(781083..782153) Neisseria gonorrhoeae FA 1090 3281901 YP_207916.1 CDS NGO0790 NC_002946.2 782211 782369 R hypothetical protein complement(782211..782369) Neisseria gonorrhoeae FA 1090 3281968 YP_207917.1 CDS NGO0791 NC_002946.2 782338 782613 D Best Blastp Hit: gb|AAF41600.1| (AE002469) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7380048|emb|CAB84626.1| (AL162755) hypothetical protein NMA1380 [Neisseria meningitidis]; hypothetical protein 782338..782613 Neisseria gonorrhoeae FA 1090 3281959 YP_207918.1 CDS lipB NC_002946.2 782666 783238 D lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 782666..783238 Neisseria gonorrhoeae FA 1090 3281911 YP_207919.1 CDS NGO0793 NC_002946.2 783231 784214 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 783231..784214 Neisseria gonorrhoeae FA 1090 3281929 YP_207920.1 CDS NGO0794 NC_002946.2 784689 785153 D Best Blastp Hit: sp|P72080|BFRA_NEIMB bacterioferritin A (Bfr A) >gi|11277091|pir||F81110 bacterioferritin A NMB1207 [imported] - Neisseria meningitidis (group B strain MD58) >gi|1673579|gb|AAB18968.1| (U76633) bacterioferritin [Neisseria gonorrhoeae] >gi|7226444|gb|AAF41589.1| (AE002468) bacterioferritin A [Neisseria meningitidis MC58]; COG2193 Bacterioferritin (cytochrome b1); BfrA 784689..785153 Neisseria gonorrhoeae FA 1090 3281962 YP_207921.1 CDS NGO0795 NC_002946.2 785181 785654 D Best Blastp Hit: sp|P56999|BFRB_NEIMA bacterioferritin B (Bfr B) >gi|11277092|pir||E81110 bacterioferritin B NMB1206 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226443|gb|AAF41588.1| (AE002468) bacterioferritin B [Neisseria meningitidis MC58] >gi|7380044|emb|CAB84622.1| (AL162755) bacterioferritin B [Neisseria meningitidis]; COG2193 Bacterioferritin (cytochrome b1); BfrB 785181..785654 Neisseria gonorrhoeae FA 1090 3282018 YP_207922.1 CDS NGO0796 NC_002946.2 785742 786314 R Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); hypothetical protein complement(785742..786314) Neisseria gonorrhoeae FA 1090 3282037 YP_207923.1 CDS NGO0797 NC_002946.2 785985 786302 D Best Blastp Hit: pir||C81110 transcription regulator NMB1204 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226441|gb|AAF41586.1| (AE002468) transcriptional regulator [Neisseria meningitidis MC58] >gi|7380043|emb|CAB84621.1| (AL162755) transcriptional regulator [Neisseria meningitidis]; COG1396 Predicted transcriptional regulators; transcriptional regulator 785985..786302 Neisseria gonorrhoeae FA 1090 3282012 YP_207924.1 CDS NGO0798 NC_002946.2 786351 788909 D Best Blastp Hit: pir||B81110 protein-PII uridylyltransferase NMB1203 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226440|gb|AAF41585.1| (AE002468) protein-PII uridylyltransferase [Neisseria meningitidis MC58]; uridylyltransferase 786351..788909 Neisseria gonorrhoeae FA 1090 3282021 YP_207925.1 CDS NGO0799 NC_002946.2 789056 790519 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 789056..790519 Neisseria gonorrhoeae FA 1090 3282011 YP_207926.1 CDS NGO0800 NC_002946.2 790591 790839 R hypothetical protein complement(790591..790839) Neisseria gonorrhoeae FA 1090 3282030 YP_207927.1 CDS NGO0801 NC_002946.2 790855 793230 R Best Blastp Hit: pir||G81109 ribonuclease II family protein NMB1200 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226437|gb|AAF41582.1| (AE002468) ribonuclease II family protein [Neisseria meningitidis MC58]; COG0557 Exoribonucleases; ribonuclease complement(790855..793230) Neisseria gonorrhoeae FA 1090 3282029 YP_207928.1 CDS NGO0802 NC_002946.2 793665 793934 D Best Blastp Hit: emb|CAB84478.1| (AL162755) hypothetical protein NMA1218 [Neisseria meningitidis]; hypothetical protein 793665..793934 Neisseria gonorrhoeae FA 1090 3282047 YP_207929.1 CDS NGO0803 NC_002946.2 793931 795742 R Best Blastp Hit: pir||H81111 GTP-binding protein TypA NMB1199 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226435|gb|AAF41581.1| (AE002467) GTP-binding protein TypA [Neisseria meningitidis MC58]; COG1217 Membrane GTPase; GTP-binding protein complement(793931..795742) Neisseria gonorrhoeae FA 1090 3281979 YP_207930.1 CDS NGO0804 NC_002946.2 795859 796749 R Best Blastp Hit: pir||C81906 hypothetical protein NMA1369 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380037|emb|CAB84615.1| (AL162755) hypothetical protein NMA1369 [Neisseria meningitidis]; COG0063 Predicted sugar kinase; hypothetical protein complement(795859..796749) Neisseria gonorrhoeae FA 1090 3281980 YP_207931.1 CDS NGO0805 NC_002946.2 796889 797470 D Best Blastp Hit: pir||F81111 nickel-dependent hydrogenase, b-type cytochrome chain NMB1196, NMB1158 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226395|gb|AAF41544.1| (AE002464) nickel-dependent hydrogenase, b-type cytochrome subunit [Neisseria meningitidis MC58] >gi|7226433|gb|AAF41579.1| (AE002467) nickel-dependent hydrogenase, b-type cytochrome subunit [Neisseria meningitidis MC58]; hypothetical protein 796889..797470 Neisseria gonorrhoeae FA 1090 3281992 YP_207932.1 CDS NGO0806 NC_002946.2 797898 798980 D Best Blastp Hit: >gi|11354227|pir||T46867 uroporphyrin-III C-methyltransferase (EC 2.1.1.107) [imported] - Neisseria meningitidis gi|1752671|emb|CAA71251.1| (Y10177) sirohaem synthase [Neisseria meningitidis]; hypothetical protein 797898..798980 Neisseria gonorrhoeae FA 1090 3281987 YP_207933.1 CDS NGO0809 NC_002946.2 802735 804594 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 802735..804594 Neisseria gonorrhoeae FA 1090 3281902 YP_207934.1 CDS NGO0810 NC_002946.2 804636 804938 D Best Blastp Hit: gb|AAA47469.1| (M57505) ORF3 [Pseudorabies virus]; hypothetical protein 804636..804938 Neisseria gonorrhoeae FA 1090 3281846 YP_207935.1 CDS NGO0811 NC_002946.2 804781 805686 R Best Blastp Hit: gb|AAF41535.1| (AE002463) hypothetical protein [Neisseria meningitidis MC58] >gi|7226423|gb|AAF41570.1| (AE002466) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(804781..805686) Neisseria gonorrhoeae FA 1090 3281947 YP_207936.1 CDS NGO0812 NC_002946.2 805132 805749 D Best Blastp Hit: pir||B81117 hypothetical protein NMB1147, NMB1185 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226384|gb|AAF41534.1| (AE002463) hypothetical protein [Neisseria meningitidis MC58] >gi|7226422|gb|AAF41569.1| (AE002466) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 805132..805749 Neisseria gonorrhoeae FA 1090 3281894 YP_207937.1 CDS NGO0813 NC_002946.2 805845 806897 R Best Blastp Hit: pir||A81117 biotin synthetase NMB1146, NMB1184 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226383|gb|AAF41533.1| (AE002463) biotin synthetase [Neisseria meningitidis MC58] >gi|7226421|gb|AAF41568.1| (AE002466) biotin synthetase [Neisseria meningitidis MC58]; COG0502 Biotin synthase and related enzymes; biotin synthase complement(805845..806897) Neisseria gonorrhoeae FA 1090 3281938 YP_207938.1 CDS NGO0814 NC_002946.2 806915 807067 R Best Blastp Hit: emb|CAB84603.1| (AL162755) hypothetical protein NMA1357 [Neisseria meningitidis]; hypothetical protein complement(806915..807067) Neisseria gonorrhoeae FA 1090 3281941 YP_207939.1 CDS NGO0815 NC_002946.2 807104 808480 R Best Blastp Hit: pir||F81904 probable UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase (EC 6.3.2.-) NMA1356 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380024|emb|CAB84602.1| (AL162755) UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase [Neisseria meningitidis]; COG0773 UDP-N-acetylmuramate-alanine ligase; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase complement(807104..808480) Neisseria gonorrhoeae FA 1090 3281819 YP_207940.1 CDS NGO0816 NC_002946.2 808542 808847 R Best Blastp Hit: pir||G81116 hypothetical protein NMB1144, NMB1182 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226381|gb|AAF41531.1| (AE002463) hypothetical protein [Neisseria meningitidis MC58] >gi|7226419|gb|AAF41566.1| (AE002466) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(808542..808847) Neisseria gonorrhoeae FA 1090 3281946 YP_207941.1 CDS NGO0818 NC_002946.2 809472 809669 R Best Blastp Hit: pir||T26843 hypothetical protein Y43F4B.5 - Caenorhabditis elegans >gi|3880930|emb|CAA16334.1| (AL021481) contains similarity to Pfam domain: PF00408 (Phosphoglucomutase/phosphomannomutase), Score=3.3, E-value=4.3e-11, N=1; cDNA EST EMBL:M89080 comes from this gene; cDNA EST EMBL:T00805 comes from this gene; cDNA EST EMBL:T00831 comes from this gen>; hypothetical protein complement(809472..809669) Neisseria gonorrhoeae FA 1090 3281953 YP_207942.1 CDS NGO0819 NC_002946.2 809679 810464 R Best Blastp Hit: emb|CAB84598.1| (AL162755) RNA methyltransferase [Neisseria meningitidis]; COG0566 rRNA methylases; RNA methyltransferase complement(809679..810464) Neisseria gonorrhoeae FA 1090 3281974 YP_207943.1 CDS NGO0820 NC_002946.2 810538 811818 R Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); COG0037 Predicted ATPases of the PP-loop superamily; hypothetical protein complement(810538..811818) Neisseria gonorrhoeae FA 1090 3282219 YP_207944.1 CDS NGO0821 NC_002946.2 811916 812875 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(811916..812875) Neisseria gonorrhoeae FA 1090 3282210 YP_207945.1 CDS NGO0822 NC_002946.2 813087 813488 D Best Blastp Hit: pir||A81119 conserved hypothetical protein NMB1138, NMB1176, NMA1348 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226375|gb|AAF41526.1| (AE002462) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7226413|gb|AAF41561.1| (AE002465) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7380017|emb|CAB84595.1| (AL162755) hypothetical protein NMA1348 [Neisseria meningitidis]; COG1188 Predicted small RNA-binding protein (S4; hypothetical protein 813087..813488 Neisseria gonorrhoeae FA 1090 3282222 YP_207946.1 CDS NGO0823 NC_002946.2 813556 813753 R Best Blastp Hit: gb|AAF41525.1| (AE002462) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7226412|gb|AAF41560.1| (AE002465) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7380016|emb|CAB84594.1| (AL162755) hypothetical protein NMA1347 [Neisseria meningitidis]; hypothetical protein complement(813556..813753) Neisseria gonorrhoeae FA 1090 3282209 YP_207947.1 CDS NGO0825 NC_002946.2 814566 814907 R Best Blastp Hit: pir||E81118 ferredoxin [2Fe-2S] NMB1134, NMB1172, NMA1344 [similarity] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226371|gb|AAF41522.1| (AE002462) ferredoxin, 2Fe-2S type [Neisseria meningitidis MC58] >gi|7226409|gb|AAF41557.1| (AE002465) ferredoxin, 2Fe-2S type [Neisseria meningitidis MC58] >gi|7380014|emb|CAB84592.1| (AL162755) ferredoxin [Neisseria meningitidis]; COG0633 Ferredoxin; ferredoxin complement(814566..814907) Neisseria gonorrhoeae FA 1090 3282203 YP_207948.1 CDS NGO0826 NC_002946.2 814963 815721 R Best Blastp Hit: emb|CAB84591.1| (AL162755) hypothetical protein NMA1343 [Neisseria meningitidis]; hypothetical protein complement(814963..815721) Neisseria gonorrhoeae FA 1090 3282206 YP_207949.1 CDS NGO0827 NC_002946.2 815760 816323 R Best Blastp Hit: emb|CAB84590.1| (AL162755) hypothetical protein NMA1341 [Neisseria meningitidis]; hypothetical protein complement(815760..816323) Neisseria gonorrhoeae FA 1090 3282243 YP_207950.1 CDS NGO0828 NC_002946.2 816373 816519 R Best Blastp Hit: gb|AAF41523.1| (AE002462) hypothetical protein [Neisseria meningitidis MC58] >gi|7226410|gb|AAF41558.1| (AE002465) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(816373..816519) Neisseria gonorrhoeae FA 1090 3282148 YP_207951.1 CDS hscA NC_002946.2 816596 818458 R involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA complement(816596..818458) Neisseria gonorrhoeae FA 1090 3282201 YP_207952.1 CDS NGO0830 NC_002946.2 818629 819501 D Best Blastp Hit: pir||A81118 phytoene synthase, probable NMB1130, NMB1168 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226367|gb|AAF41518.1| (AE002462) phytoene synthase, [Neisseria meningitidis MC58] >gi|7226405|gb|AAF41553.1| (AE002465) phytoene synthase, [Neisseria meningitidis MC58]; COG1562 Phytoene/squalene synthetase; poly-isoprenyl transferase 818629..819501 Neisseria gonorrhoeae FA 1090 3282287 YP_207953.1 CDS NGO0831 NC_002946.2 819576 820949 D Best Blastp Hit: gb|AAF41516.1| (AE002462) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7226403|gb|AAF41551.1| (AE002465) conserved hypothetical protein [Neisseria meningitidis MC58]; oxidoreductase 819576..820949 Neisseria gonorrhoeae FA 1090 3282214 YP_207954.1 CDS NGO0832 NC_002946.2 820972 821691 D Best Blastp Hit: emb|CAB84586.1| (AL162755) oxidoreductase [Neisseria meningitidis]; COG1028 Dehydrogenases with different specificities; short chain dehydrogenase 820972..821691 Neisseria gonorrhoeae FA 1090 3282339 YP_207955.1 CDS NGO0834 NC_002946.2 821857 822528 D Best Blastp Hit: gb|AAF41514.1| (AE002461) hypothetical protein [Neisseria meningitidis MC58] >gi|7226400|gb|AAF41549.1| (AE002464) hypothetical protein [Neisseria meningitidis MC58] >gi|7380007|emb|CAB84585.1| (AL162755) periplasmic protein [Neisseria meningitidis]; COG1462 Uncharacterized protein CsgG involved; hypothetical protein 821857..822528 Neisseria gonorrhoeae FA 1090 3282240 YP_207956.1 CDS NGO0835 NC_002946.2 822902 823549 D Best Blastp Hit: gb|AAF44774.1|AF235157_1 (AF235157) GNA1162 [Neisseria gonorrhoeae] >gi|7274440|gb|AAF44775.1|AF235158_1 (AF235158) GNA1162 [Neisseria gonorrhoeae] >gi|7274442|gb|AAF44776.1|AF235159_1 (AF235159) GNA1162 [Neisseria gonorrhoeae]; genome-derived Neisseria antigen 1162 822902..823549 Neisseria gonorrhoeae FA 1090 3282212 YP_207957.1 CDS NGO0836 NC_002946.2 823589 823732 D Best Blastp Hit: gb|AAF41511.1| (AE002461) hypothetical protein [Neisseria meningitidis MC58] >gi|7226397|gb|AAF41546.1| (AE002464) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 823589..823732 Neisseria gonorrhoeae FA 1090 3282331 YP_207958.1 CDS NGO0841 NC_002946.2 825812 826480 D Best Blastp Hit: pir||B81896 hypothetical protein NMA1279 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379956|emb|CAB84531.1| (AL162755) hypothetical protein NMA1279 [Neisseria meningitidis]; COG0593 ATPase involved in DNA replication; DnaA regulatory inactivator Hda 825812..826480 Neisseria gonorrhoeae FA 1090 3282156 YP_207959.1 CDS NGO0842 NC_002946.2 826477 827145 D Best Blastp Hit: emb|CAB84530.1| (AL162755) hypothetical protein NMA1278 [Neisseria meningitidis]; COG0560 Phosphoserine phosphatase; hypothetical protein 826477..827145 Neisseria gonorrhoeae FA 1090 3282880 YP_207960.1 CDS NGO0843 NC_002946.2 827290 827577 R hypothetical protein complement(827290..827577) Neisseria gonorrhoeae FA 1090 3282879 YP_207961.1 CDS NGO0844 NC_002946.2 827592 828488 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(827592..828488) Neisseria gonorrhoeae FA 1090 3282514 YP_207962.1 CDS NGO0845 NC_002946.2 828658 829788 D Best Blastp Hit: pir||F81895 hypothetical protein NMA1274 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379952|emb|CAB84527.1| (AL162755) hypothetical protein NMA1274 [Neisseria meningitidis]; hypothetical protein 828658..829788 Neisseria gonorrhoeae FA 1090 3282199 YP_207963.1 CDS NGO0846 NC_002946.2 829862 830713 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 829862..830713 Neisseria gonorrhoeae FA 1090 3282218 YP_207964.1 CDS NGO0847 NC_002946.2 830798 831460 R Best Blastp Hit: gb|AAF41466.1| (AE002457) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(830798..831460) Neisseria gonorrhoeae FA 1090 3282220 YP_207965.1 CDS NGO0848 NC_002946.2 831659 833212 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(831659..833212) Neisseria gonorrhoeae FA 1090 3282216 YP_207966.1 CDS proA NC_002946.2 834819 836081 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 834819..836081 Neisseria gonorrhoeae FA 1090 3282227 YP_207967.1 CDS NGO0851 NC_002946.2 836257 839301 R Best Blastp Hit: pir||E81125 cell division protein FtsK NMB1067 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226307|gb|AAF41463.1| (AE002457) cell division protein FtsK [Neisseria meningitidis MC58]; COG1674 DNA segregation ATPase FtsK/SpoIIIE and; cell-division protein complement(836257..839301) Neisseria gonorrhoeae FA 1090 3282193 YP_207968.1 CDS NGO0852 NC_002946.2 839467 840147 D Best Blastp Hit: pir||G81894 probable integral membrane protein NMA1265 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379945|emb|CAB84520.1| (AL162755) integral membrane protein [Neisseria meningitidis]; hypothetical protein 839467..840147 Neisseria gonorrhoeae FA 1090 3282157 YP_207969.1 CDS NGO0853 NC_002946.2 840176 840535 D may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 840176..840535 Neisseria gonorrhoeae FA 1090 3282247 YP_207970.1 CDS NGO0854 NC_002946.2 840823 840960 R hypothetical protein complement(840823..840960) Neisseria gonorrhoeae FA 1090 3282249 YP_207971.1 CDS NGO0857 NC_002946.2 841711 842067 R Best Blastp Hit: pir||A81127 dihydroneopterin aldolase NMB1063 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226302|gb|AAF41459.1| (AE002456) dihydroneopterin aldolase [Neisseria meningitidis MC58]; COG1539 Dihydroneopterin aldolase; dihydroneopterin aldolase complement(841711..842067) Neisseria gonorrhoeae FA 1090 3282152 YP_207972.1 CDS NGO0858 NC_002946.2 842123 842725 D Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); COG0344 Predicted membrane protein, YgiH/UPF0078; hypothetical protein 842123..842725 Neisseria gonorrhoeae FA 1090 3282318 YP_207973.1 CDS NGO0859 NC_002946.2 842817 843662 D Best Blastp Hit: pir||G81126 conserved hypothetical protein NMB1061 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226300|gb|AAF41457.1| (AE002456) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 842817..843662 Neisseria gonorrhoeae FA 1090 3282364 YP_207974.1 CDS NGO0860 NC_002946.2 843668 844126 D hypothetical protein 843668..844126 Neisseria gonorrhoeae FA 1090 3282382 YP_207975.1 CDS NGO0861 NC_002946.2 844152 844400 R hypothetical protein complement(844152..844400) Neisseria gonorrhoeae FA 1090 3282378 YP_207976.1 CDS NGO0862 NC_002946.2 844641 845615 D catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 844641..845615 Neisseria gonorrhoeae FA 1090 3282373 YP_207977.1 CDS NGO0863 NC_002946.2 845774 845992 R Best Blastp Hit: gb|AAF41455.1| (AE002456) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379938|emb|CAB84513.1| (AL162755) hypothetical protein NMA1258 [Neisseria meningitidis]; hypothetical protein complement(845774..845992) Neisseria gonorrhoeae FA 1090 3282160 YP_207978.1 CDS NGO0865 NC_002946.2 848531 848773 D Best Blastp Hit: gb|AAF41453.1| (AE002456) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 848531..848773 Neisseria gonorrhoeae FA 1090 3282878 YP_207979.1 CDS glyA NC_002946.2 848840 850090 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 848840..850090 Neisseria gonorrhoeae FA 1090 3281886 YP_207980.1 CDS NGO0867 NC_002946.2 850163 850552 R Best Blastp Hit: pir||F81234 conserved hypothetical protein NMB0121 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225338|gb|AAF40580.1| (AE002371) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(850163..850552) Neisseria gonorrhoeae FA 1090 3281889 YP_207981.1 CDS NGO0868 NC_002946.2 851492 852283 D Best Blastp Hit: emb|CAB45007.1| (AJ242839) OpcA protein [Neisseria gonorrhoeae]; class 5 outer membrane protein; OpcA 851492..852283 Neisseria gonorrhoeae FA 1090 3281834 YP_207982.1 CDS NGO0869 NC_002946.2 852434 853078 D Best Blastp Hit: pir||D81128 dedA protein NMB1052 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226292|gb|AAF41450.1| (AE002455) dedA protein [Neisseria meningitidis MC58] >gi|7379932|emb|CAB84505.1| (AL162755) DedA protein ortholog [Neisseria meningitidis]; COG0586 Uncharacterized membrane-associated protein; hypothetical protein 852434..853078 Neisseria gonorrhoeae FA 1090 3282191 YP_207983.1 CDS NGO0870 NC_002946.2 853097 855007 D Best Blastp Hit: emb|CAB45011.1| (AJ242839) ATP-binding protein [Neisseria gonorrhoeae]; COG0488 ATPase components of ABC transporters with; AbcZ; ABC transporter ATP-binding protein 853097..855007 Neisseria gonorrhoeae FA 1090 3281835 YP_207984.1 CDS NGO0871 NC_002946.2 855029 855358 D Best Blastp Hit: emb|CAB45013.1| (AJ242839) hypothetical protein [Neisseria gonorrhoeae]; hypothetical protein 855029..855358 Neisseria gonorrhoeae FA 1090 3281836 YP_207985.1 CDS NGO0872 NC_002946.2 855507 856982 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 855507..856982 Neisseria gonorrhoeae FA 1090 3281838 YP_207986.1 CDS NGO0873 NC_002946.2 857066 858004 D Best Blastp Hit: emb|CAB44950.1| (AJ242840) DNA modification methylase [Neisseria gonorrhoeae] >gi|5262959|emb|CAB45015.2| (AJ242839) DNA modification methylase [Neisseria gonorrhoeae]; COG0270 Site-specific DNA methylase dcm; DcmD; DNA modification methylase M.NGOI 857066..858004 Neisseria gonorrhoeae FA 1090 3281993 YP_207987.1 CDS NGO0874 NC_002946.2 858005 858865 D Best Blastp Hit: sp|P31032|T2NM_NEIGO type II restriction enzyme NgoI (endonuclease NgomI) (R.NGOMI) >gi|281723|pir||B42709 DNA restriction endonuclease NgoMI - Neisseria gonorrhoeae >gi|5051443|emb|CAB44951.1| (AJ242840) DNA restriction endonuclease [Neisseria gonorrhoeae] >gi|5262960|emb|CAB45874.1| (AJ242839) DNA restriction endonuclease [Neisseria gonorrhoeae]; type II DNA restriction endonuclease R.NGOI 858005..858865 Neisseria gonorrhoeae FA 1090 3281831 YP_207988.1 CDS NGO0875 NC_002946.2 858882 860018 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 858882..860018 Neisseria gonorrhoeae FA 1090 3281845 YP_207989.1 CDS NGO0876 NC_002946.2 860065 860547 D Best Blastp Hit: gb|AAF41418.1| (AE002452) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0454 Predicted acetyltransferases; hypothetical protein 860065..860547 Neisseria gonorrhoeae FA 1090 3282150 YP_207990.1 CDS NGO0878 NC_002946.2 861698 861901 D Best Blastp Hit: dbj|BAA82522.1| (AB030007) tunicate retinoic acid-inducible modular protease [Polyandrocarpa misakiensis]; hypothetical protein 861698..861901 Neisseria gonorrhoeae FA 1090 3282510 YP_207991.1 CDS NGO0879 NC_002946.2 861993 862184 R hypothetical protein complement(861993..862184) Neisseria gonorrhoeae FA 1090 3282498 YP_207992.1 CDS NGO0880 NC_002946.2 862282 862887 D Best Blastp Hit: pir||B81892 hypothetical protein NMA1237 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379924|emb|CAB84495.1| (AL162755) hypothetical protein NMA1237 [Neisseria meningitidis]; hypothetical protein 862282..862887 Neisseria gonorrhoeae FA 1090 3282161 YP_207993.1 CDS NGO0881 NC_002946.2 863630 864451 R Best Blastp Hit: gb|AAA96489.1| (L36381) orfB; [Neisseria gonorrhoeae]; ORF B of IS150 complement(863630..864451) Neisseria gonorrhoeae FA 1090 3282231 YP_207994.1 CDS NGO0883 NC_002946.2 864823 865149 D hypothetical protein 864823..865149 Neisseria gonorrhoeae FA 1090 3282534 YP_207995.1 CDS NGO0884 NC_002946.2 865171 865578 D Best Blastp Hit: emb|CAB84830.1| (AL162756) transposase fragment [Neisseria meningitidis]; hypothetical protein 865171..865578 Neisseria gonorrhoeae FA 1090 3281475 YP_207996.1 CDS NGO0885 NC_002946.2 865554 865724 R Best Blastp Hit: pir||H81133 rubredoxin NMB0993 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226233|gb|AAF41396.1| (AE002450) rubredoxin [Neisseria meningitidis MC58] >gi|7379892|emb|CAB84462.1| (AL162755) rubredoxin [Neisseria meningitidis]; COG1773 Rubredoxin; rubredoxin complement(865554..865724) Neisseria gonorrhoeae FA 1090 3281432 YP_207997.1 CDS NGO0886 NC_002946.2 865857 866939 R Best Blastp Hit: emb|CAB84463.1| (AL162755) acyl-CoA dehydrogenase [Neisseria meningitidis]; COG1960 Acyl-CoA dehydrogenases; acyl-CoA dehydrogenase complement(865857..866939) Neisseria gonorrhoeae FA 1090 3281450 YP_207998.1 CDS NGO0887 NC_002946.2 867077 867625 R Best Blastp Hit: emb|CAB84464.1| (AL162755) hypothetical protein NMA1203 [Neisseria meningitidis]; hypothetical protein complement(867077..867625) Neisseria gonorrhoeae FA 1090 3281121 YP_207999.1 CDS NGO0888 NC_002946.2 867765 868025 R Best Blastp Hit: gb|AAF41399.1| (AE002450) hypothetical protein [Neisseria meningitidis MC58] >gi|7379895|emb|CAB84465.1| (AL162755) hypothetical protein NMA1204 [Neisseria meningitidis]; hypothetical protein complement(867765..868025) Neisseria gonorrhoeae FA 1090 3281077 YP_208000.1 CDS NGO0889 NC_002946.2 868110 868271 D hypothetical protein 868110..868271 Neisseria gonorrhoeae FA 1090 3281123 YP_208001.1 CDS NGO0890 NC_002946.2 868321 870012 R component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; D-lactate dehydrogenase complement(868321..870012) Neisseria gonorrhoeae FA 1090 3281117 YP_208002.1 CDS NGO0891 NC_002946.2 870109 870528 R Best Blastp Hit: pir||S52906 virion protein j13L - African swine fever virus >gi|695432|emb|CAA59319.1| (X84893) j13L [African swine fever virus]; hypothetical protein complement(870109..870528) Neisseria gonorrhoeae FA 1090 3281394 YP_208003.1 CDS NGO0892 NC_002946.2 870645 870926 D hypothetical protein 870645..870926 Neisseria gonorrhoeae FA 1090 3281145 YP_208004.1 CDS NGO0893 NC_002946.2 871108 874941 D Best Blastp Hit: emb|CAB84467.1| (AL162755) oxidoreductase [Neisseria meningitidis]; COG0247 Fe-S oxidoreductases; oxidoreductase 871108..874941 Neisseria gonorrhoeae FA 1090 3281219 YP_208005.1 CDS NGO0894 NC_002946.2 875018 876019 D Best Blastp Hit: pir||H81888 hypothetical protein NMA1207 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379898|emb|CAB84468.1| (AL162755) hypothetical protein NMA1207 [Neisseria meningitidis]; COG0042 Predicted TIM-barrel enzymes, possibly; hypothetical protein 875018..876019 Neisseria gonorrhoeae FA 1090 3281369 YP_208006.1 CDS NGO0895 NC_002946.2 876080 876262 R Best Blastp Hit: emb|CAB84469.1| (AL162755) hypothetical protein NMA1208 [Neisseria meningitidis]; hypothetical protein complement(876080..876262) Neisseria gonorrhoeae FA 1090 3281792 YP_208007.1 CDS NGO0896 NC_002946.2 876435 876566 R hypothetical protein complement(876435..876566) Neisseria gonorrhoeae FA 1090 3281127 YP_208008.1 CDS NGO0897 NC_002946.2 876614 876778 D hypothetical protein 876614..876778 Neisseria gonorrhoeae FA 1090 3281116 YP_208009.1 CDS greA NC_002946.2 878296 878772 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(878296..878772) Neisseria gonorrhoeae FA 1090 3281103 YP_208010.1 CDS NGO0900 NC_002946.2 879163 880464 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 879163..880464 Neisseria gonorrhoeae FA 1090 3281109 YP_208011.1 CDS NGO0901 NC_002946.2 880542 881075 R Best Blastp Hit: emb|CAB84873.1| (AL162756) lipoprotein [Neisseria meningitidis]; COG0791 Cell wall-associated hydrolases; lipoprotein complement(880542..881075) Neisseria gonorrhoeae FA 1090 3281599 YP_208012.1 CDS NGO0902 NC_002946.2 881132 882709 R Best Blastp Hit: emb|CAB84874.1| (AL162756) phopholipase D-family protein [Neisseria meningitidis]; COG1502 Cardiolipin synthase, phoaphatidylserine; phopholipase D-family protein complement(881132..882709) Neisseria gonorrhoeae FA 1090 3281106 YP_208013.1 CDS NGO0903 NC_002946.2 882770 884176 R Best Blastp Hit: emb|CAB84875.1| (AL162756) integral membrane protein [Neisseria meningitidis]; COG0477 Permeases; aminoglycoside resistance efflux transporter protein; AgrA complement(882770..884176) Neisseria gonorrhoeae FA 1090 3281338 YP_208014.1 CDS NGO0904 NC_002946.2 884459 885238 D Best Blastp Hit: pir||D81859 conserved hypothetical protein NMA1648 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380290|emb|CAB84876.1| (AL162756) conserved hypothetical protein [Neisseria meningitidis]; COG0247 Fe-S oxidoreductases; hypothetical protein 884459..885238 Neisseria gonorrhoeae FA 1090 3281130 YP_208015.1 CDS NGO0905 NC_002946.2 885235 885936 D Best Blastp Hit: emb|CAB84877.1| (AL162756) conserved hypothetical protein [Neisseria meningitidis]; COG1556 Uncharacterized ACR, YkgG family; hypothetical protein 885235..885936 Neisseria gonorrhoeae FA 1090 3281189 YP_208016.1 CDS NGO0906 NC_002946.2 885933 887387 D Best Blastp Hit: pir||F81859 conserved hypothetical iron-sulfur protein NMA1650 [similarity] - Neisseria meningitidis (group A strain Z2491) >gi|7380292|emb|CAB84878.1| (AL162756) conserved hypothetical iron-sulphur protein [Neisseria meningitidis]; COG1139 Uncharacterized conserved protein containing; hypothetical protein 885933..887387 Neisseria gonorrhoeae FA 1090 3281363 YP_208017.1 CDS NGO0907 NC_002946.2 887536 887955 R Best Blastp Hit: gb|AAF19189.1|AF200716_2 (AF200716) trafficking protein B [Neisseria gonorrhoeae]; FitB complement(887536..887955) Neisseria gonorrhoeae FA 1090 3281212 YP_208018.1 CDS NGO0908 NC_002946.2 887955 888191 R Best Blastp Hit: gb|AAF19188.1|AF200716_1 (AF200716) trafficking protein A [Neisseria gonorrhoeae]; FitA complement(887955..888191) Neisseria gonorrhoeae FA 1090 3281660 YP_208019.1 CDS NGO0909 NC_002946.2 888397 889218 R Best Blastp Hit: gb|AAA96489.1| (L36381) orfB; [Neisseria gonorrhoeae]; IS150 ORF B complement(888397..889218) Neisseria gonorrhoeae FA 1090 3281783 YP_208020.1 CDS NGO0912 NC_002946.2 890632 891522 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(890632..891522) Neisseria gonorrhoeae FA 1090 3281099 YP_208021.1 CDS sucC NC_002946.2 891533 892699 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(891533..892699) Neisseria gonorrhoeae FA 1090 3281695 YP_208022.1 CDS NGO0914 NC_002946.2 892771 893058 R Best Blastp Hit: gb|AAF41364.1| (AE002447) hypothetical protein [Neisseria meningitidis MC58] >gi|7379845|emb|CAB84414.1| (AL162755) membrane protein [Neisseria meningitidis]; hypothetical protein complement(892771..893058) Neisseria gonorrhoeae FA 1090 3281759 YP_208023.1 CDS NGO0915 NC_002946.2 893178 894611 R E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(893178..894611) Neisseria gonorrhoeae FA 1090 3281748 YP_208024.1 CDS NGO0916 NC_002946.2 894872 896053 R component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase complement(894872..896053) Neisseria gonorrhoeae FA 1090 3281365 YP_208025.1 CDS sucA NC_002946.2 896153 898981 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 complement(896153..898981) Neisseria gonorrhoeae FA 1090 3281399 YP_208026.1 CDS gltA NC_002946.2 899186 900469 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase complement(899186..900469) Neisseria gonorrhoeae FA 1090 3281236 YP_208027.1 CDS NGO0919 NC_002946.2 900581 900829 R Best Blastp Hit: gb|AAF41358.1| (AE002446) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379840|emb|CAB84409.1| (AL162755) hypothetical protein NMA1147 [Neisseria meningitidis]; hypothetical protein complement(900581..900829) Neisseria gonorrhoeae FA 1090 3281227 YP_208028.1 CDS sdhB NC_002946.2 900833 901561 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(900833..901561) Neisseria gonorrhoeae FA 1090 3281178 YP_208029.1 CDS NGO0921 NC_002946.2 901660 903423 R Best Blastp Hit: pir||D81881 probable succinate dehydrogenase (EC 1.3.99.1) flavoprotein NMA1145 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379838|emb|CAB84407.1| (AL162755) succinate dehydrogenase flavoprotein subunit [Neisseria meningitidis]; COG1053 Succinate dehydrogenase/fumarate reductase; succinate dehydrogenase flavoprotein subunit complement(901660..903423) Neisseria gonorrhoeae FA 1090 3281104 YP_208030.1 CDS NGO0922 NC_002946.2 903426 903767 R Best Blastp Hit: pir||E81138 succinate dehydrogenase, hydrophobic membrane anchor protein NMB0949 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226188|gb|AAF41355.1| (AE002446) succinate dehydrogenase, hydrophobic membrane anchor protein [Neisseria meningitidis MC58]; COG2142 Cytochrome b subunit of fumarate reductase; succinate dehydrogenase hydrophobic membrane anchor protein complement(903426..903767) Neisseria gonorrhoeae FA 1090 3281726 YP_208031.1 CDS NGO0923 NC_002946.2 903761 904138 R Best Blastp Hit: pir||D81138 succinate dehydrogenase, cytochrome b556 chain NMB0948 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226187|gb|AAF41354.1| (AE002446) succinate dehydrogenase, cytochrome b556 subunit [Neisseria meningitidis MC58] >gi|7379836|emb|CAB84405.1| (AL162755) succinate dehydrogenase cytochrome B subunit [Neisseria meningitidis]; COG2009 Cytochrome b subunit of succinate; fumarate reductase cytochrome b large subunit complement(903761..904138) Neisseria gonorrhoeae FA 1090 3281694 YP_208032.1 CDS NGO0924 NC_002946.2 904199 904408 R hypothetical protein complement(904199..904408) Neisseria gonorrhoeae FA 1090 3282877 YP_208033.1 CDS NGO0925 NC_002946.2 904425 905828 R Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(904425..905828) Neisseria gonorrhoeae FA 1090 3282876 YP_208034.1 CDS NGO0926 NC_002946.2 906077 906814 R Best Blastp Hit: gb|AAF41352.1| (AE002445) peroxiredoxin 2 family protein/glutaredoxin [Neisseria meningitidis MC58] >gi|7379834|emb|CAB84403.1| (AL162755) redoxin [Neisseria meningitidis]; COG0678 Peroxiredoxin; peroxiredoxin family protein/glutaredoxin complement(906077..906814) Neisseria gonorrhoeae FA 1090 3282577 YP_208035.1 CDS NGO0927 NC_002946.2 906917 907081 R Best Blastp Hit: gb|AAF41351.1| (AE002445) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(906917..907081) Neisseria gonorrhoeae FA 1090 3282583 YP_208036.1 CDS NGO0928 NC_002946.2 907093 909369 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(907093..909369) Neisseria gonorrhoeae FA 1090 3282587 YP_208037.1 CDS metF NC_002946.2 909505 910383 R MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase complement(909505..910383) Neisseria gonorrhoeae FA 1090 3282606 YP_208038.1 CDS rpmE2 NC_002946.2 910582 910857 D RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 910582..910857 Neisseria gonorrhoeae FA 1090 3282614 YP_208039.1 CDS rpmJ NC_002946.2 910857 910982 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 910857..910982 Neisseria gonorrhoeae FA 1090 3282568 YP_208040.1 CDS NGO0932 NC_002946.2 911041 911481 D Best Blastp Hit: gb|AAA53170.1| (U00415) gp120 [Human immunodeficiency virus type 1]; hypothetical protein 911041..911481 Neisseria gonorrhoeae FA 1090 3282569 YP_208041.1 CDS metX NC_002946.2 911429 912568 D Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 911429..912568 Neisseria gonorrhoeae FA 1090 3282566 YP_208042.1 CDS NGO0934 NC_002946.2 912565 913146 D Best Blastp Hit: pir||B81880 hypothetical protein NMA1135 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379828|emb|CAB84397.1| (AL162755) hypothetical protein NMA1135 [Neisseria meningitidis]; hypothetical protein 912565..913146 Neisseria gonorrhoeae FA 1090 3282567 YP_208043.1 CDS NGO0936 NC_002946.2 914253 914813 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(914253..914813) Neisseria gonorrhoeae FA 1090 3281711 YP_208044.1 CDS NGO0937 NC_002946.2 914856 916007 R Best Blastp Hit: pir||G81879 hypothetical protein NMA1132 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379825|emb|CAB84394.1| (AL162755) hypothetical protein NMA1132 [Neisseria meningitidis]; hypothetical protein complement(914856..916007) Neisseria gonorrhoeae FA 1090 3281688 YP_208045.1 CDS NGO0938 NC_002946.2 916026 916334 R Best Blastp Hit: pir||F81879 probable membrane protein NMA1131 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379824|emb|CAB84393.1| (AL162755) membrane protein [Neisseria meningitidis]; hypothetical protein complement(916026..916334) Neisseria gonorrhoeae FA 1090 3281670 YP_208046.1 CDS NGO0939 NC_002946.2 916342 916653 R hypothetical protein complement(916342..916653) Neisseria gonorrhoeae FA 1090 3281627 YP_208047.1 CDS miaA NC_002946.2 916655 917596 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 916655..917596 Neisseria gonorrhoeae FA 1090 3281618 YP_208048.1 CDS NGO0941 NC_002946.2 917600 918319 D Best Blastp Hit: gb|AAF41340.1| (AE002444) cytidine and deoxycytidylate deaminase [Neisseria meningitidis MC58]; COG0590 Cytosine deaminase-related enzymes; cytosine deaminase 917600..918319 Neisseria gonorrhoeae FA 1090 3281595 YP_208049.1 CDS NGO0942 NC_002946.2 918324 918812 D Best Blastp Hit: gb|AAF41339.1| (AE002444) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 918324..918812 Neisseria gonorrhoeae FA 1090 3281522 YP_208050.1 CDS dapA NC_002946.2 921445 922320 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 921445..922320 Neisseria gonorrhoeae FA 1090 3281803 YP_208051.1 CDS NGO0948 NC_002946.2 922329 923525 D Best Blastp Hit: pir||C81141 hypothetical protein NMB0928 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226166|gb|AAF41335.1| (AE002444) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 922329..923525 Neisseria gonorrhoeae FA 1090 3282562 YP_208052.1 CDS NGO0949 NC_002946.2 923582 924514 R Best Blastp Hit: sp|P42786|PIP_NEIGO proline iminopeptidase (prolyl aminopeptidase) >gi|1073191|pir||S39592 prolyl aminopeptidase (EC 3.4.11.5) - Neisseria gonorrhoeae >gi|396840|emb|CAA80948.1| (Z25461) proline iminopeptidase Pip [Neisseria gonorrhoeae]; COG0596 Predicted hydrolases or acyltransferases; proline iminopeptidase complement(923582..924514) Neisseria gonorrhoeae FA 1090 3282130 YP_208053.1 CDS NGO0950 NC_002946.2 924507 924803 R hypothetical protein complement(924507..924803) Neisseria gonorrhoeae FA 1090 3282129 YP_208054.1 CDS NGO0952 NC_002946.2 926135 928903 D Best Blastp Hit: emb|CAB84928.1| (AL162756) outer membrane substrate binding protein [Neisseria meningitidis]; COG1629 Outer membrane receptor proteins, mostly Fe; TonB-dependent receptor protein 926135..928903 Neisseria gonorrhoeae FA 1090 3282122 YP_208055.1 CDS NGO0953 NC_002946.2 928934 929149 D hypothetical protein 928934..929149 Neisseria gonorrhoeae FA 1090 3282086 YP_208056.1 CDS NGO0955 NC_002946.2 929779 929928 R hypothetical protein complement(929779..929928) Neisseria gonorrhoeae FA 1090 3282096 YP_208057.1 CDS NGO0956 NC_002946.2 929928 931145 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase complement(929928..931145) Neisseria gonorrhoeae FA 1090 3282184 YP_208058.1 CDS NGO0957 NC_002946.2 931182 931346 D hypothetical protein 931182..931346 Neisseria gonorrhoeae FA 1090 3282179 YP_208059.1 CDS rph NC_002946.2 931347 932075 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(931347..932075) Neisseria gonorrhoeae FA 1090 3282178 YP_208060.1 CDS NGO0959 NC_002946.2 932157 932621 R Best Blastp Hit: emb|CAB84931.1| (AL162756) conserved hypothetical protein [Neisseria meningitidis]; COG0589 Universal stress protein UspA and related; hypothetical protein complement(932157..932621) Neisseria gonorrhoeae FA 1090 3282570 YP_208061.1 CDS NGO0960 NC_002946.2 932839 933615 D Best Blastp Hit: gb|AAF41857.1| (AE002499) HesA/MoeB/ThiF family protein [Neisseria meningitidis MC58]; COG1179 Dinucleotide-utilizing enzymes involved in; hypothetical protein 932839..933615 Neisseria gonorrhoeae FA 1090 3282611 YP_208062.1 CDS NGO0961 NC_002946.2 933860 934714 D Best Blastp Hit: pir||D81075 conserved hypothetical protein NMB1504 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226747|gb|AAF41860.1| (AE002500) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1354 Uncharacterized ACR; hypothetical protein 933860..934714 Neisseria gonorrhoeae FA 1090 3282601 YP_208063.1 CDS NGO0962 NC_002946.2 934704 935963 D catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 934704..935963 Neisseria gonorrhoeae FA 1090 3282612 YP_208064.1 CDS argS NC_002946.2 936055 937773 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 936055..937773 Neisseria gonorrhoeae FA 1090 3282609 YP_208065.1 CDS NGO0967 NC_002946.2 939735 939995 D Best Blastp Hit: gb|AAF41506.1| (AE002461) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 939735..939995 Neisseria gonorrhoeae FA 1090 3282571 YP_208066.1 CDS NGO0968 NC_002946.2 940182 940928 R Best Blastp Hit: pir||A81076 amino acid ABC transporter permease NMB1509 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226752|gb|AAF41865.1| (AE002500) amino acid ABC transporter permease [Neisseria meningitidis MC58] >gi|7380350|emb|CAB84937.1| (AL162756) binding-protein-dependent transport systems inner membrane protein [Neisseria meningitidis]; COG0765 Amino acid ABC transporter permease; ABC transporter permease, amino acid complement(940182..940928) Neisseria gonorrhoeae FA 1090 3281136 YP_208067.1 CDS NGO0969 NC_002946.2 941107 941808 R Best Blastp Hit: gb|AAF41866.1| (AE002500) thermonuclease [Neisseria meningitidis MC58] >gi|7380351|emb|CAB84938.1| (AL162756) nuclease [Neisseria meningitidis]; COG1525 Micrococcal nuclease (thermonuclease); hypothetical protein complement(941107..941808) Neisseria gonorrhoeae FA 1090 3281135 YP_208068.1 CDS NGO0970 NC_002946.2 941847 942518 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(941847..942518) Neisseria gonorrhoeae FA 1090 3281118 YP_208069.1 CDS ispF NC_002946.2 942595 943077 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase complement(942595..943077) Neisseria gonorrhoeae FA 1090 3281114 YP_208070.1 CDS ispD NC_002946.2 943109 943798 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(943109..943798) Neisseria gonorrhoeae FA 1090 3281402 YP_208071.1 CDS NGO0973 NC_002946.2 943795 944529 R Best Blastp Hit: pir||E81867 DNA-directed DNA polymerase (EC 2.7.7.7) III epsilon chain NMA1714 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380355|emb|CAB84942.1| (AL162756) DNA polymerase III, epsilon chain [Neisseria meningitidis]; COG0847 DNA polymerase III epsilon subunit; DNA polymerase III subunit epsilon complement(943795..944529) Neisseria gonorrhoeae FA 1090 3282875 YP_208072.1 CDS NGO0974 NC_002946.2 944685 945995 R Best Blastp Hit: pir||B81074 transporter probable NMB1515 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226759|gb|AAF41871.1| (AE002501) transporter [Neisseria meningitidis MC58]; hypothetical protein complement(944685..945995) Neisseria gonorrhoeae FA 1090 3282874 YP_208073.1 CDS NGO0975 NC_002946.2 945985 946170 R Best Blastp Hit: gb|AAF41872.1| (AE002501) fixS protein [Neisseria meningitidis MC58] >gi|7380357|emb|CAB84944.1| (AL162756) inner membrane protein [Neisseria meningitidis]; nitrogen fixation protein; FixS complement(945985..946170) Neisseria gonorrhoeae FA 1090 3282873 YP_208074.1 CDS NGO0976 NC_002946.2 946170 946469 R Best Blastp Hit: gb|AAF41873.1| (AE002501) hypothetical protein [Neisseria meningitidis MC58] >gi|7380358|emb|CAB84945.1| (AL162756) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(946170..946469) Neisseria gonorrhoeae FA 1090 3282872 YP_208075.1 CDS NGO0977 NC_002946.2 946790 948016 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 946790..948016 Neisseria gonorrhoeae FA 1090 3282870 YP_208076.1 CDS dipZ NC_002946.2 948529 950370 R two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein complement(948529..950370) Neisseria gonorrhoeae FA 1090 3282871 YP_208077.1 CDS NGO0979 NC_002946.2 950461 950931 D Best Blastp Hit: pir||C81868 hypothetical protein NMA1720 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380361|emb|CAB84948.1| (AL162756) hypothetical protein [Neisseria meningitidis]; hypothetical protein 950461..950931 Neisseria gonorrhoeae FA 1090 3282868 YP_208078.1 CDS NGO0980 NC_002946.2 951004 951831 R Best Blastp Hit: emb|CAB84949.1| (AL162756) transferase [Neisseria meningitidis]; COG1562 Phytoene/squalene synthetase; transferase complement(951004..951831) Neisseria gonorrhoeae FA 1090 3282869 YP_208079.1 CDS NGO0981 NC_002946.2 951903 952385 R Best Blastp Hit: gb|AAF41878.1| (AE002501) FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [Neisseria meningitidis MC58] >gi|7380363|emb|CAB84950.1| (AL162756) peptidyl-prolyl isomerase [Neisseria meningitidis]; COG1047 FKBP-type peptidyl-prolyl cis-trans; peptidyl-prolyl cis-trans isomerase complement(951903..952385) Neisseria gonorrhoeae FA 1090 3282866 YP_208080.1 CDS NGO0982 NC_002946.2 952514 952798 D hypothetical protein 952514..952798 Neisseria gonorrhoeae FA 1090 3282865 YP_208081.1 CDS NGO0983 NC_002946.2 952858 953124 D outer membrane protein H.8; Lip 952858..953124 Neisseria gonorrhoeae FA 1090 3282867 YP_208082.1 CDS NGO0984 NC_002946.2 953234 954601 D Best Blastp Hit: pir||G81868 hypothetical protein NMA1724 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380365|emb|CAB84952.1| (AL162756) hypothetical protein [Neisseria meningitidis]; COG0277 FAD/FMN-containing dehydrogenases; hypothetical protein 953234..954601 Neisseria gonorrhoeae FA 1090 3282864 YP_208083.1 CDS smpB NC_002946.2 957331 957783 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(957331..957783) Neisseria gonorrhoeae FA 1090 3282863 YP_208084.1 CDS NGO0987 NC_002946.2 957832 958842 R Best Blastp Hit: pir||S61299 lipopolysaccharide heptosyltransferase (EC 2.4.99.-) II rfaF [similarity] - Neisseria gonorrhoeae >gi|599920|emb|CAA85504.1| (Z37141) ADP-heptose:LPS heptosyltransferase II [Neisseria gonorrhoeae]; COG0859 ADP-heptose: LPS heptosyltransferase; RfaF protein; ADP-heptose--LPS heptosyltransferase II complement(957832..958842) Neisseria gonorrhoeae FA 1090 3281360 YP_208085.1 CDS NGO0988 NC_002946.2 959239 960108 R Best Blastp Hit: emb|CAB84956.1| (AL162756) methylated-DNA-protein-cysteine methyltransferase [Neisseria meningitidis]; COG0350 Methylated DNA-protein cysteine; methylated-DNA--protein-cysteine methyltransferase complement(959239..960108) Neisseria gonorrhoeae FA 1090 3281698 YP_208086.1 CDS NGO0990 NC_002946.2 960876 961739 R Best Blastp Hit: sp|P77634|YBCM_ECOLI hypothetical transcriptional regulator in EMRE-RUS intergenic region >gi|7467042|pir||H64786 ybcM protein - Escherichia coli >gi|1778460|gb|AAB40743.1| (U82598) hypothetical protein [Escherichia coli] >gi|1786758|gb|AAC73647.1| (AE000160) ARAC-type regulatory protein [Escherichia coli]; COG2207 AraC-type DNA-binding domain-containing; AraC family transcriptional regulator complement(960876..961739) Neisseria gonorrhoeae FA 1090 3281628 YP_208087.1 CDS NGO0991 NC_002946.2 962111 963256 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(962111..963256) Neisseria gonorrhoeae FA 1090 3281244 YP_208088.1 CDS NGO0992 NC_002946.2 963369 963989 R Best Blastp Hit: pir||G81071 conserved hypothetical protein NMB1531 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226776|gb|AAF41886.1| (AE002503) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7380373|emb|CAB84959.1| (AL162757) conserved hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(963369..963989) Neisseria gonorrhoeae FA 1090 3281206 YP_208089.1 CDS NGO0993 NC_002946.2 964023 964532 R Best Blastp Hit: pir||H81071 conserved hypothetical protein NMB1532 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226777|gb|AAF41887.1| (AE002503) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(964023..964532) Neisseria gonorrhoeae FA 1090 3281387 YP_208090.1 CDS NGO0994 NC_002946.2 964627 965178 R Best Blastp Hit: sp|P07212|H8_NEIMC H.8 outer membrane protein precursor >gi|279443|pir||AZNHM azurin precursor - Neisseria meningitidis >gi|45042|emb|CAA68589.1| (Y00530) outer membrane protein H.8 (AA 1-183) [Neisseria meningitidis]; lipid modified azurin protein; Laz complement(964627..965178) Neisseria gonorrhoeae FA 1090 3281780 YP_208091.1 CDS NGO0995 NC_002946.2 965461 965883 R Best Blastp Hit: pir||F81797 hypothetical protein NMA1734 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380376|emb|CAB84962.1| (AL162757) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(965461..965883) Neisseria gonorrhoeae FA 1090 3281728 YP_208092.1 CDS NGO0996 NC_002946.2 966015 968765 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 966015..968765 Neisseria gonorrhoeae FA 1090 3282574 YP_208093.1 CDS dnaG NC_002946.2 968910 970682 D synthesizes RNA primers at the replication forks; DNA primase 968910..970682 Neisseria gonorrhoeae FA 1090 3282186 YP_208094.1 CDS NGO0999 NC_002946.2 970869 972797 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 970869..972797 Neisseria gonorrhoeae FA 1090 3282596 YP_208095.1 CDS NGO1000 NC_002946.2 972837 973064 R Best Blastp Hit: pir||F72596 hypothetical protein APE1239 - Aeropyrum pernix (strain K1) >gi|5104914|dbj|BAA80228.1| (AP000061) 221aa long hypothetical protein [Aeropyrum pernix]; phage associated protein complement(972837..973064) Neisseria gonorrhoeae FA 1090 3282575 YP_208096.1 CDS NGO1001 NC_002946.2 973188 973673 R Best Blastp Hit: dbj|BAB04059.1| (AP001508) unknown [Bacillus halodurans]; phage associated protein complement(973188..973673) Neisseria gonorrhoeae FA 1090 3282576 YP_208097.1 CDS NGO1002 NC_002946.2 973680 974048 R phage associated protein complement(973680..974048) Neisseria gonorrhoeae FA 1090 3282605 YP_208098.1 CDS NGO1003 NC_002946.2 974075 974617 R Best Blastp Hit: dbj|BAB04058.1| (AP001508) unknown conserved protein in others [Bacillus halodurans]; phage associated protein complement(974075..974617) Neisseria gonorrhoeae FA 1090 3282188 YP_208099.1 CDS NGO1004 NC_002946.2 974783 975142 R phage associated protein complement(974783..975142) Neisseria gonorrhoeae FA 1090 3282187 YP_208100.1 CDS NGO1005 NC_002946.2 975275 976141 R phage associated protein complement(975275..976141) Neisseria gonorrhoeae FA 1090 3282123 YP_208101.1 CDS NGO1006 NC_002946.2 976191 976541 R Best Blastp Hit: emb|CAB84830.1| (AL162756) transposase fragment [Neisseria meningitidis]; phage associated protein complement(976191..976541) Neisseria gonorrhoeae FA 1090 3281128 YP_208102.1 CDS NGO1007 NC_002946.2 976976 977185 R Best Blastp Hit: gi|9633475 hypothetical protein [Bacteriophage VT2-Sa] >gi|5881671|dbj|BAA84362.1| (AP000363) hypothetical protein [Bacteriophage VT2-Sa]; phage associated protein complement(976976..977185) Neisseria gonorrhoeae FA 1090 3281988 YP_208103.1 CDS NGO1008 NC_002946.2 977178 977468 R Best Blastp Hit: pir||A81123 hypothetical protein NMB1087 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226325|gb|AAF41479.1| (AE002459) hypothetical protein [Neisseria meningitidis MC58]; phage associated protein complement(977178..977468) Neisseria gonorrhoeae FA 1090 3282169 YP_208104.1 CDS NGO1009 NC_002946.2 977473 977760 R Best Blastp Hit: gb|AAF41415.1| (AE002452) conserved hypothetical protein [Neisseria meningitidis MC58]; phage associated protein complement(977473..977760) Neisseria gonorrhoeae FA 1090 3282180 YP_208105.1 CDS NGO1010 NC_002946.2 977880 978314 R phage associated protein complement(977880..978314) Neisseria gonorrhoeae FA 1090 3282182 YP_208106.1 CDS NGO1011 NC_002946.2 978515 978889 R Best Blastp Hit: dbj|BAB06568.1| (AP001516) GTP pyrophosphokinase [Bacillus halodurans]; phage associated protein complement(978515..978889) Neisseria gonorrhoeae FA 1090 3282069 YP_208107.1 CDS NGO1012 NC_002946.2 978886 979764 R phage associated protein complement(978886..979764) Neisseria gonorrhoeae FA 1090 3282116 YP_208108.1 CDS NGO1013 NC_002946.2 980160 980540 R Best Blastp Hit: pir||H81130 transcription regulator NMB1007 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226247|gb|AAF41408.1| (AE002452) transcriptional regulator [Neisseria meningitidis MC58]; COG1396 Predicted transcriptional regulators; phage repressor, phage associated protein complement(980160..980540) Neisseria gonorrhoeae FA 1090 3282127 YP_208109.1 CDS NGO1014 NC_002946.2 980749 981042 D Best Blastp Hit: gb|AAF41406.1| (AE002451) hypothetical protein [Neisseria meningitidis MC58]; phage associated protein 980749..981042 Neisseria gonorrhoeae FA 1090 3281634 YP_208110.1 CDS NGO1015 NC_002946.2 981023 981313 D Best Blastp Hit: gb|AAF41404.1| (AE002451) hypothetical protein [Neisseria meningitidis MC58]; phage associated protein 981023..981313 Neisseria gonorrhoeae FA 1090 3282563 YP_208111.1 CDS NGO1020 NC_002946.2 982212 984008 D phage associated protein 982212..984008 Neisseria gonorrhoeae FA 1090 3282126 YP_208112.1 CDS NGO1024 NC_002946.2 986456 987631 D Best Blastp Hit: pir||F81861 hypothetical protein NMA1666 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380308|emb|CAB84894.1| (AL162756) hypothetical protein [Neisseria meningitidis]; COG2070 Dioxygenases related to 2-nitropropane; hypothetical protein 986456..987631 Neisseria gonorrhoeae FA 1090 3282094 YP_208113.1 CDS NGO1025 NC_002946.2 987973 988521 R Best Blastp Hit: pir||G81861 probable inner membrane protein NMA1667 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380309|emb|CAB84895.1| (AL162756) inner membrane protein [Neisseria meningitidis]; hypothetical protein complement(987973..988521) Neisseria gonorrhoeae FA 1090 3281395 YP_208114.1 CDS NGO1026 NC_002946.2 988524 990020 R Best Blastp Hit: gb|AAF41813.1| (AE002495) ferredoxin, 4Fe-4S bacterial type [Neisseria meningitidis MC58]; COG0348 Polyferredoxin; ferredoxin complement(988524..990020) Neisseria gonorrhoeae FA 1090 3281253 YP_208115.1 CDS NGO1027 NC_002946.2 990282 990482 R Best Blastp Hit: gb|AAF41815.1| (AE002495) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(990282..990482) Neisseria gonorrhoeae FA 1090 3281637 YP_208116.1 CDS NGO1028 NC_002946.2 990554 992533 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 990554..992533 Neisseria gonorrhoeae FA 1090 3282211 YP_208117.1 CDS fumC NC_002946.2 992677 994065 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 992677..994065 Neisseria gonorrhoeae FA 1090 3282108 YP_208118.1 CDS NGO1030 NC_002946.2 994130 995053 R Best Blastp Hit: gb|AAF41818.1| (AE002495) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0697 Predicted permeases; hypothetical protein complement(994130..995053) Neisseria gonorrhoeae FA 1090 3281683 YP_208119.1 CDS NGO1031 NC_002946.2 995426 995950 R Best Blastp Hit: pir||A81080 single-strand binding protein NMB1460 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226702|gb|AAF41819.1| (AE002496) single-strand binding protein [Neisseria meningitidis MC58] >gi|7380314|emb|CAB84900.1| (AL162756) single-stranded binding protein [Neisseria meningitidis]; COG0629 Single-stranded DNA-binding protein; single-stranded DNA binding protein complement(995426..995950) Neisseria gonorrhoeae FA 1090 3281124 YP_208120.1 CDS NGO1032 NC_002946.2 995954 997336 R Best Blastp Hit: pir||B81080 drug resistance translocase NMB1461 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226703|gb|AAF41820.1| (AE002496) drug resistance translocase [Neisseria meningitidis MC58]; COG0477 Permeases; hypothetical protein complement(995954..997336) Neisseria gonorrhoeae FA 1090 3282556 YP_208121.1 CDS NGO1033 NC_002946.2 997448 998071 R Best Blastp Hit: pir||C81080 transglycosylase, probable NMB1462 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226704|gb|AAF41821.1| (AE002496) transglycosylase, [Neisseria meningitidis MC58]; COG0741 Soluble lytic murein transglycosylase and; transglycosylase complement(997448..998071) Neisseria gonorrhoeae FA 1090 3281132 YP_208122.1 CDS NGO1034 NC_002946.2 998126 998470 D Best Blastp Hit: gb|AAF42457.1| (AE002563) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 998126..998470 Neisseria gonorrhoeae FA 1090 3281669 YP_208123.1 CDS NGO1037 NC_002946.2 999363 999746 R hypothetical protein complement(999363..999746) Neisseria gonorrhoeae FA 1090 3282585 YP_208124.1 CDS NGO1040 NC_002946.2 1000964 1001692 D Best Blastp Hit: gb|AAF41823.1| (AE002496) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1000964..1001692 Neisseria gonorrhoeae FA 1090 3282439 YP_208125.1 CDS NGO1041 NC_002946.2 1001855 1003363 D Best Blastp Hit: pir||B81863 exopolyphosphatase (EC 3.6.1.-) NMA1679 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380320|emb|CAB84907.1| (AL162756) exopolyphosphatase [Neisseria meningitidis]; COG0248 Exopolyphosphatase; exopolyphosphatase 1001855..1003363 Neisseria gonorrhoeae FA 1090 3282578 YP_208126.1 CDS NGO1042 NC_002946.2 1003525 1003908 D Best Blastp Hit: pir||C81863 probable membrane protein NMA1680 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380321|emb|CAB84908.1| (AL162756) membrane protein [Neisseria meningitidis]; hypothetical protein 1003525..1003908 Neisseria gonorrhoeae FA 1090 3282592 YP_208127.1 CDS NGO1043 NC_002946.2 1003573 1003917 R hypothetical protein complement(1003573..1003917) Neisseria gonorrhoeae FA 1090 3282593 YP_208128.1 CDS NGO1044 NC_002946.2 1004234 1004779 R Best Blastp Hit: pir||A81081 hypothetical protein NMB1470 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226710|gb|AAF41827.1| (AE002496) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1004234..1004779) Neisseria gonorrhoeae FA 1090 3282565 YP_208129.1 CDS NGO1045 NC_002946.2 1004860 1005870 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(1004860..1005870) Neisseria gonorrhoeae FA 1090 3282584 YP_208130.1 CDS NGO1046 NC_002946.2 1006130 1008709 D Best Blastp Hit: pir||F81863 ClpB protein NMA1683 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380324|emb|CAB84911.1| (AL162756) ClpB protein [Neisseria meningitidis]; COG0542 ATPases with chaperone activity, ATP-binding; ClpB protein 1006130..1008709 Neisseria gonorrhoeae FA 1090 3282204 YP_208131.1 CDS NGO1047 NC_002946.2 1008781 1009995 R broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase complement(1008781..1009995) Neisseria gonorrhoeae FA 1090 3282573 YP_208132.1 CDS NGO1048 NC_002946.2 1010084 1010293 R Best Blastp Hit: pir||H81078 4-oxalocrotonate tautomerase, probable NMB1474 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226715|gb|AAF41831.1| (AE002497) 4-oxalocrotonate tautomerase, [Neisseria meningitidis MC58] >gi|7380326|emb|CAB84913.1| (AL162756) tautomerase [Neisseria meningitidis]; COG1942 Uncharacterized protein; hypothetical protein complement(1010084..1010293) Neisseria gonorrhoeae FA 1090 3282572 YP_208133.1 CDS NGO1049 NC_002946.2 1010485 1011291 D Best Blastp Hit: pir||A81079 conserved hypothetical protein NMB1475 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226716|gb|AAF41832.1| (AE002497) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1010485..1011291 Neisseria gonorrhoeae FA 1090 3281113 YP_208134.1 CDS NGO1051 NC_002946.2 1012691 1012930 D hypothetical protein 1012691..1012930 Neisseria gonorrhoeae FA 1090 3282604 YP_208135.1 CDS NGO1052 NC_002946.2 1012965 1013675 D catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 1012965..1013675 Neisseria gonorrhoeae FA 1090 3281802 YP_208136.1 CDS recX NC_002946.2 1013748 1014209 D binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 1013748..1014209 Neisseria gonorrhoeae FA 1090 3281800 YP_208137.1 CDS NGO1054 NC_002946.2 1014283 1014444 D Best Blastp Hit: emb|CAB84918.1| (AL162756) hypothetical protein [Neisseria meningitidis]; hypothetical protein 1014283..1014444 Neisseria gonorrhoeae FA 1090 3281526 YP_208138.1 CDS NGO1055 NC_002946.2 1014597 1015079 D Best Blastp Hit: pir||G81079 acyl CoA thioester hydrolase NMB1482 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226722|gb|AAF41838.1| (AE002497) acyl CoA thioester hydrolase [Neisseria meningitidis MC58]; COG1607 Acyl-CoA hydrolase; acyl-CoA hydrolase 1014597..1015079 Neisseria gonorrhoeae FA 1090 3281122 YP_208139.1 CDS NGO1056 NC_002946.2 1015477 1016688 R Best Blastp Hit: gb|AAF41839.1| (AE002497) lipoprotein NlpD, [Neisseria meningitidis MC58]; COG0739 Membrane proteins related to; hypothetical protein complement(1015477..1016688) Neisseria gonorrhoeae FA 1090 3281140 YP_208140.1 CDS surE NC_002946.2 1016592 1017338 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(1016592..1017338) Neisseria gonorrhoeae FA 1090 3281758 YP_208141.1 CDS NGO1059 NC_002946.2 1017355 1018911 R Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); COG0861 Membrane protein TerC, possibly involved in; hypothetical protein complement(1017355..1018911) Neisseria gonorrhoeae FA 1090 3281721 YP_208142.1 CDS NGO1060 NC_002946.2 1019279 1020064 R Best Blastp Hit: pir||E81077 fimbrial assembly protein NMB1487 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226728|gb|AAF41843.1| (AE002498) fimbrial assembly protein [Neisseria meningitidis MC58]; FimB protein complement(1019279..1020064) Neisseria gonorrhoeae FA 1090 3281970 YP_208143.1 CDS NGO1061 NC_002946.2 1020175 1021608 R Best Blastp Hit: pir||C81865 succinate-semialdehyde dehydrogenase (NAD(P)+) (EC 1.2.1.16) NMA1696 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380337|emb|CAB84924.1| (AL162756) succinate semialdehyde dehydrogenase [Neisseria meningitidis]; COG1012 NAD-dependent aldehyde dehydrogenases; succinate semialdehyde dehydrogenase complement(1020175..1021608) Neisseria gonorrhoeae FA 1090 3281280 YP_208144.1 CDS NGO1062 NC_002946.2 1022009 1022803 D Best Blastp Hit: pir||D81193 hypothetical protein NMB0488 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225715|gb|AAF40923.1| (AE002405) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1022009..1022803 Neisseria gonorrhoeae FA 1090 3281199 YP_208145.1 CDS NGO1063 NC_002946.2 1022564 1022944 R Best Blastp Hit: emb|CAB84925.1| (AL162756) lipoprotein [Neisseria meningitidis]; hypothetical protein complement(1022564..1022944) Neisseria gonorrhoeae FA 1090 3281787 YP_208146.1 CDS NGO1064 NC_002946.2 1023468 1025549 D Best Blastp Hit: pir||C81078 carbon starvation protein A homolog NMB1493 [similarity] - Neisseria meningitidis (group B strain MD58) >gi|7226734|gb|AAF41849.1| (AE002498) carbon starvation protein A [Neisseria meningitidis MC58]; COG1966 Carbon starvation protein CstA, predicted; hypothetical protein 1023468..1025549 Neisseria gonorrhoeae FA 1090 3281225 YP_208147.1 CDS NGO1065 NC_002946.2 1025539 1025733 D Best Blastp Hit: gb|AAF41850.1| (AE002498) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7380340|emb|CAB84927.1| (AL162756) conserved hypothetical protein [Neisseria meningitidis]; hypothetical protein 1025539..1025733 Neisseria gonorrhoeae FA 1090 3281120 YP_208148.1 CDS NGO1066 NC_002946.2 1025841 1026155 D MafI1; MafI protein 1025841..1026155 Neisseria gonorrhoeae FA 1090 3281626 YP_208149.1 CDS NGO1067 NC_002946.2 1026289 1027251 D Best Blastp Hit: gb|AAD31038.1|AF142582_2 (AF142582) adhesin MafA [Neisseria gonorrhoeae]; MafA1; MafA adhesin protein 1026289..1027251 Neisseria gonorrhoeae FA 1090 3281190 YP_208150.1 CDS NGO1068 NC_002946.2 1027291 1028697 D Best Blastp Hit: gb|AAD31039.1|AF142582_3 (AF142582) adhesin MafB [Neisseria gonorrhoeae]; protein MafB2; MafB-like protein 1027291..1028697 Neisseria gonorrhoeae FA 1090 3281798 YP_208151.1 CDS NGO1069 NC_002946.2 1028713 1029015 D Best Blastp Hit: pir||E81004 hypothetical protein NMB2113 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227373|gb|AAF42426.1| (AE002560) hypothetical protein [Neisseria meningitidis MC58] >gi|7379072|emb|CAB83621.1| (AL162752) hypothetical protein NMA0316 [Neisseria meningitidis]; hypothetical protein 1028713..1029015 Neisseria gonorrhoeae FA 1090 3281784 YP_208152.1 CDS NGO1070 NC_002946.2 1029707 1030024 D Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); hypothetical protein 1029707..1030024 Neisseria gonorrhoeae FA 1090 3281529 YP_208153.1 CDS NGO1072 NC_002946.2 1030403 1030687 D hypothetical protein 1030403..1030687 Neisseria gonorrhoeae FA 1090 3281131 YP_208154.1 CDS NGO1073 NC_002946.2 1030690 1031013 D Best Blastp Hit: pir||F81004 hypothetical protein NMB2115 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227374|gb|AAF42427.1| (AE002560) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1030690..1031013 Neisseria gonorrhoeae FA 1090 3281119 YP_208155.1 CDS NGO1074 NC_002946.2 1031165 1031512 D MafI2; MafI protein 2 1031165..1031512 Neisseria gonorrhoeae FA 1090 3281232 YP_208156.1 CDS NGO1077 NC_002946.2 1035986 1036333 R hypothetical protein complement(1035986..1036333) Neisseria gonorrhoeae FA 1090 3281744 YP_208157.1 CDS NGO1078 NC_002946.2 1036789 1037235 D Best Blastp Hit: pir||E81878 probable acyl-CoA hydrolase NMA1121 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379815|emb|CAB84383.1| (AL162755) acyl-CoA hydrolase [Neisseria meningitidis]; COG1607 Acyl-CoA hydrolase; acyl-CoA hydrolase 1036789..1037235 Neisseria gonorrhoeae FA 1090 3281110 YP_208158.1 CDS NGO1079 NC_002946.2 1037286 1038107 R Best Blastp Hit: pir||D81878 probable oxidoreductase NMA1120 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379814|emb|CAB84382.1| (AL162755) oxidoreductase [Neisseria meningitidis]; COG0300 Short-chain dehydrogenases of various; oxidoreductase complement(1037286..1038107) Neisseria gonorrhoeae FA 1090 3281795 YP_208159.1 CDS NGO1080 NC_002946.2 1038226 1038684 D Best Blastp Hit: emb|CAB84381.1| (AL162755) C-type cytochrome [Neisseria meningitidis]; C-type cytochrome 1038226..1038684 Neisseria gonorrhoeae FA 1090 3281435 YP_208160.1 CDS NGO1081 NC_002946.2 1038827 1039963 R Best Blastp Hit: gb|AAC44539.1| (U60664) alpha-2,3-sialyltransferase [Neisseria gonorrhoeae]; alpha-2,3-sialyltransferase complement(1038827..1039963) Neisseria gonorrhoeae FA 1090 3281757 YP_208161.1 CDS NGO1082 NC_002946.2 1040336 1042561 D Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); isocitrate dehydrogenase 1040336..1042561 Neisseria gonorrhoeae FA 1090 3281241 YP_208162.1 CDS NGO1083 NC_002946.2 1042858 1043178 D hypothetical protein 1042858..1043178 Neisseria gonorrhoeae FA 1090 3281144 YP_208163.1 CDS NGO1084 NC_002946.2 1044120 1044287 D Best Blastp Hit: emb|CAB84549.1| (AL162755) hypothetical protein NMA1297 [Neisseria meningitidis]; hypothetical protein 1044120..1044287 Neisseria gonorrhoeae FA 1090 3281793 YP_208164.1 CDS NGO1085 NC_002946.2 1044447 1045292 D Best Blastp Hit: sp|P44189|YE18_HAEIN hypothetical protein HI1418 >gi|1074769|pir||A64029 hypothetical protein HI1418 - Haemophilus influenzae (strain Rd KW20) >gi|1574254|gb|AAC23068.1| (U32821) H. influenzae predicted coding region HI1418 [Haemophilus influenzae Rd]; phage associated protein 1044447..1045292 Neisseria gonorrhoeae FA 1090 3281794 YP_208165.1 CDS NGO1086 NC_002946.2 1045279 1045479 R Best Blastp Hit: gb|AAF41392.1| (AE002449) hypothetical protein [Neisseria meningitidis MC58]; phage associated protein complement(1045279..1045479) Neisseria gonorrhoeae FA 1090 3281767 YP_208166.1 CDS NGO1087 NC_002946.2 1045494 1046174 D Best Blastp Hit: pir||T32944 hypothetical protein W01B11.5 - Caenorhabditis elegans >gi|2804494|gb|AAB97600.1| (AF043704) similar to S. cerevisiae SLA2 (GB:Z22811) [Caenorhabditis elegans]; phage associated protein 1045494..1046174 Neisseria gonorrhoeae FA 1090 3281134 YP_208167.1 CDS NGO1088 NC_002946.2 1046153 1046638 R phage associated protein complement(1046153..1046638) Neisseria gonorrhoeae FA 1090 3281133 YP_208168.1 CDS NGO1089 NC_002946.2 1046644 1047117 R phage associated protein complement(1046644..1047117) Neisseria gonorrhoeae FA 1090 3281578 YP_208169.1 CDS NGO1090 NC_002946.2 1047173 1048468 R Best Blastp Hit: gi|9632520 hypothetical protein [Bacteriophage 933W] >gi|9633449|ref|NP_050552.1| hypothetical protein [Bacteriophage VT2-Sa] >gi|4585431|gb|AAD25459.1|AF125520_54 (AF125520) hypothetical protein [Bacteriophage 933W] >gi|5881645|dbj|BAA84336.1| (AP000363) hypothetical protein [Bacteriophage VT2-Sa] >gi|7649882|dbj|BAA94160.1| (AP000422) hypothetical protein [Escherichia coli O157:H7]; phage associated protein complement(1047173..1048468) Neisseria gonorrhoeae FA 1090 3281713 YP_208170.1 CDS NGO1091 NC_002946.2 1048489 1048887 R Best Blastp Hit: gb|AAF79659.1|AC025416_33 (AC025416) F5O11.3 [Arabidopsis thaliana]; phage associated protein complement(1048489..1048887) Neisseria gonorrhoeae FA 1090 3281333 YP_208171.1 CDS NGO1092 NC_002946.2 1049094 1055027 R Best Blastp Hit: pir||A81819 hypothetical protein NMA1913 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380547|emb|CAB85134.1| (AL162757) hypothetical protein [Neisseria meningitidis]; phage associated protein complement(1049094..1055027) Neisseria gonorrhoeae FA 1090 3281125 YP_208172.1 CDS NGO1093 NC_002946.2 1055027 1056445 R phage associated protein complement(1055027..1056445) Neisseria gonorrhoeae FA 1090 3281081 YP_208173.1 CDS NGO1094 NC_002946.2 1056442 1057638 R Best Blastp Hit: emb|CAA42694.1| (X60098) M protein [Streptococcus sp.]; phage associated protein complement(1056442..1057638) Neisseria gonorrhoeae FA 1090 3281126 YP_208174.1 CDS NGO1095 NC_002946.2 1057849 1058322 R Best Blastp Hit: pir||H81143 hypothetical protein NMB0899 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226136|gb|AAF41307.1| (AE002442) hypothetical protein [Neisseria meningitidis MC58]; phage associated protein complement(1057849..1058322) Neisseria gonorrhoeae FA 1090 3281498 YP_208175.1 CDS NGO1096 NC_002946.2 1058422 1058637 R phage associated protein complement(1058422..1058637) Neisseria gonorrhoeae FA 1090 3281466 YP_208176.1 CDS NGO1097 NC_002946.2 1058674 1060926 R Best Blastp Hit: gi|9632518 portal protein [Bacteriophage 933W] >gi|9633447|ref|NP_050550.1| hypothetical protein [Bacteriophage VT2-Sa] >gi|4585429|gb|AAD25457.1|AF125520_52 (AF125520) portal protein [Bacteriophage 933W] >gi|5881643|dbj|BAA84334.1| (AP000363) hypothetical protein [Bacteriophage VT2-Sa] >gi|7649880|dbj|BAA94158.1| (AP000422) portal protein [Escherichia coli O157:H7]; phage associated protein complement(1058674..1060926) Neisseria gonorrhoeae FA 1090 3282224 YP_208177.1 CDS NGO1098 NC_002946.2 1060926 1062200 R Best Blastp Hit: sp|P44184|YE10_HAEIN hypothetical protein HI1410 >gi|1074763|pir||E64028 hypothetical protein HI1410 - Haemophilus influenzae (strain Rd KW20) >gi|1574247|gb|AAC23058.1| (U32820) H. influenzae predicted coding region HI1410 [Haemophilus influenzae Rd]; COG1783 Phage terminase large subunit; phage associated protein complement(1060926..1062200) Neisseria gonorrhoeae FA 1090 3281337 YP_208178.1 CDS NGO1099 NC_002946.2 1062181 1062423 R phage associated protein complement(1062181..1062423) Neisseria gonorrhoeae FA 1090 3282523 YP_208179.1 CDS NGO1100 NC_002946.2 1062478 1062720 R phage associated protein complement(1062478..1062720) Neisseria gonorrhoeae FA 1090 3282527 YP_208180.1 CDS NGO1101 NC_002946.2 1062720 1063034 R Best Blastp Hit: gb|AAF53095.1| (AE003632) CG14926 gene product [Drosophila melanogaster]; phage associated protein complement(1062720..1063034) Neisseria gonorrhoeae FA 1090 3282229 YP_208181.1 CDS NGO1102 NC_002946.2 1063207 1063725 R Best Blastp Hit: gb|AAF24756.1| (AF148565) endonuclease [Streptococcus thermophilus bacteriophage ST3]; phage associated protein complement(1063207..1063725) Neisseria gonorrhoeae FA 1090 3282526 YP_208182.1 CDS NGO1103 NC_002946.2 1063716 1064099 R Best Blastp Hit: dbj|BAA94132.1| (AP000422) hypothetical protein [Escherichia coli O157:H7]; phage associated protein complement(1063716..1064099) Neisseria gonorrhoeae FA 1090 3282520 YP_208183.1 CDS NGO1104 NC_002946.2 1064096 1064401 R Best Blastp Hit: sp|Q47271|YBCO_ECOLI hypothetical 10.3 KD protein IN EMRE-RUS INTERGENIC REGION >gi|2120252|pir||S66582 hypothetical protein 96 - phage 82 >gi|7467043|pir||C64787 ybcO protein - Escherichia coli cryptic lambdoid prophage DLP12 >gi|1051115|emb|CAA63329.1| (X92588) orf96 [Bacteriophage 82] >gi|1051140|emb|CAA63320.1| (X92587) orf96 [Escherichia coli] >gi|1778462|gb|AAB40745.1| (U82598) hypothetical protein [Escherichia coli] >gi|1786761|gb|AAC73650.1| (AE000160) orf, hypothetical protein [Escherichia coli]; phage associated protein complement(1064096..1064401) Neisseria gonorrhoeae FA 1090 3282516 YP_208184.1 CDS NGO1105 NC_002946.2 1064373 1064993 D phage associated protein 1064373..1064993 Neisseria gonorrhoeae FA 1090 3282509 YP_208185.1 CDS NGO1106 NC_002946.2 1065119 1065268 R phage associated protein complement(1065119..1065268) Neisseria gonorrhoeae FA 1090 3281933 YP_208186.1 CDS NGO1107 NC_002946.2 1065246 1065614 D Best Blastp Hit: gb|AAF41506.1| (AE002461) hypothetical protein [Neisseria meningitidis MC58]; phage associated protein 1065246..1065614 Neisseria gonorrhoeae FA 1090 3282512 YP_208187.1 CDS NGO1108 NC_002946.2 1065652 1066146 R phage associated protein complement(1065652..1066146) Neisseria gonorrhoeae FA 1090 3282499 YP_208188.1 CDS NGO1109 NC_002946.2 1066185 1066469 R phage associated protein complement(1066185..1066469) Neisseria gonorrhoeae FA 1090 3281812 YP_208189.1 CDS NGO1110 NC_002946.2 1066486 1067847 R Best Blastp Hit: sp|P37469|DNAC_BACSU replicative DNA helicase >gi|2127189|pir||S65970 replicative DNA helicase dnaC - Bacillus subtilis >gi|467330|dbj|BAA05176.1| (D26185) replicative DNA helicase [Bacillus subtilis] >gi|2636591|emb|CAB16081.1| (Z99124) replicative DNA helicase [Bacillus subtilis]; COG0305 Replicative DNA helicase; replicative DNA helicase, phage associated protein complement(1066486..1067847) Neisseria gonorrhoeae FA 1090 3281865 YP_208190.1 CDS NGO1111 NC_002946.2 1067844 1068974 R Best Blastp Hit: gi|9634200 Gp54 [Bacteriophage HK97] >gi|6901629|gb|AAF31132.1| (AF069529) Gp54 [Bacteriophage HK97]; phage associated protein complement(1067844..1068974) Neisseria gonorrhoeae FA 1090 3281852 YP_208191.1 CDS NGO1112 NC_002946.2 1069092 1069319 R phage associated protein complement(1069092..1069319) Neisseria gonorrhoeae FA 1090 3281851 YP_208192.1 CDS NGO1113 NC_002946.2 1069492 1069680 D phage associated protein 1069492..1069680 Neisseria gonorrhoeae FA 1090 3282517 YP_208193.1 CDS NGO1114 NC_002946.2 1069657 1069812 R phage associated protein complement(1069657..1069812) Neisseria gonorrhoeae FA 1090 3281853 YP_208194.1 CDS NGO1115 NC_002946.2 1069893 1070081 R phage associated protein complement(1069893..1070081) Neisseria gonorrhoeae FA 1090 3281882 YP_208195.1 CDS NGO1116 NC_002946.2 1070260 1070907 D Best Blastp Hit: gb|AAF41318.1| (AE002442) transcriptional regulator [Neisseria meningitidis MC58]; phage repressor protein, phage associated protein 1070260..1070907 Neisseria gonorrhoeae FA 1090 3281858 YP_208196.1 CDS NGO1117 NC_002946.2 1071067 1071606 D Best Blastp Hit: gb|AAF30438.1|AE002103_3 (AE002103) hypothetical [Ureaplasma urealyticum]; phage associated protein 1071067..1071606 Neisseria gonorrhoeae FA 1090 3281924 YP_208197.1 CDS NGO1118 NC_002946.2 1071607 1071966 D phage associated protein 1071607..1071966 Neisseria gonorrhoeae FA 1090 3281899 YP_208198.1 CDS NGO1119 NC_002946.2 1071983 1072201 R phage associated protein complement(1071983..1072201) Neisseria gonorrhoeae FA 1090 3282394 YP_208199.1 CDS NGO1120 NC_002946.2 1072684 1072884 D phage associated protein 1072684..1072884 Neisseria gonorrhoeae FA 1090 3282167 YP_208200.1 CDS NGO1121 NC_002946.2 1072917 1073393 D phage associated protein 1072917..1073393 Neisseria gonorrhoeae FA 1090 3282407 YP_208201.1 CDS NGO1122 NC_002946.2 1073390 1073665 D phage associated protein 1073390..1073665 Neisseria gonorrhoeae FA 1090 3282265 YP_208202.1 CDS NGO1123 NC_002946.2 1073806 1074138 D phage associated protein 1073806..1074138 Neisseria gonorrhoeae FA 1090 3282254 YP_208203.1 CDS NGO1124 NC_002946.2 1074307 1074567 D Best Blastp Hit: gb|AAF41312.1| (AE002442) hypothetical protein [Neisseria meningitidis MC58]; phage associated protein 1074307..1074567 Neisseria gonorrhoeae FA 1090 3282202 YP_208204.1 CDS NGO1125 NC_002946.2 1074564 1074725 D phage associated protein 1074564..1074725 Neisseria gonorrhoeae FA 1090 3282147 YP_208205.1 CDS NGO1126 NC_002946.2 1074794 1075480 D Best Blastp Hit: gb|AAC98788.1| (AF102780) replicase [Banana bunchy top virus]; phage associated protein 1074794..1075480 Neisseria gonorrhoeae FA 1090 3282194 YP_208206.1 CDS NGO1127 NC_002946.2 1075620 1075802 D Best Blastp Hit: emb|CAA61912.1| (X89769) fructose-1,6-bisphosphate aldolase [Euglena gracilis]; phage associated protein 1075620..1075802 Neisseria gonorrhoeae FA 1090 3282431 YP_208207.1 CDS NGO1128 NC_002946.2 1075799 1076290 D Best Blastp Hit: pir||T13296 hypothetical protein 8 - Streptococcus phage phi-O1205 >gi|2444088|gb|AAC79524.1| (U88974) ORF8 [Streptococcus thermophilus temperate bacteriophage O1205]; phage associated protein 1075799..1076290 Neisseria gonorrhoeae FA 1090 3281905 YP_208208.1 CDS NGO1129 NC_002946.2 1076342 1076557 D Best Blastp Hit: pir||A71978 methyl-accepting chemotaxis protein (MCP) - Helicobacter pylori (strain J99) >gi|4154575|gb|AAD05650.1| (AE001446) methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]; phage associated protein 1076342..1076557 Neisseria gonorrhoeae FA 1090 3281856 YP_208209.1 CDS NGO1130 NC_002946.2 1076668 1077651 D Best Blastp Hit: gi|10955548 translocator YopD [Yersinia enterocolitica] >gi|586795|sp|P37132|YOPD_YEREN YOPD protein >gi|4324335|gb|AAD16812.1| (AF102990) translocator YopD [Yersinia enterocolitica]; phage associated protein 1076668..1077651 Neisseria gonorrhoeae FA 1090 3282225 YP_208210.1 CDS NGO1131 NC_002946.2 1077648 1078061 D phage associated protein 1077648..1078061 Neisseria gonorrhoeae FA 1090 3282195 YP_208211.1 CDS NGO1132 NC_002946.2 1078087 1078281 D phage associated protein 1078087..1078281 Neisseria gonorrhoeae FA 1090 3282232 YP_208212.1 CDS NGO1133 NC_002946.2 1078572 1079246 D Best Blastp Hit: pir||F81104 hypothetical protein NMB1253 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226493|gb|AAF41633.1| (AE002473) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1078572..1079246 Neisseria gonorrhoeae FA 1090 3282248 YP_208213.1 CDS ribA NC_002946.2 1079239 1079832 D catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1079239..1079832 Neisseria gonorrhoeae FA 1090 3282140 YP_208214.1 CDS NGO1135 NC_002946.2 1079913 1080224 R hypothetical protein complement(1079913..1080224) Neisseria gonorrhoeae FA 1090 3282545 YP_208215.1 CDS NGO1136 NC_002946.2 1079991 1080200 D Best Blastp Hit: emb|CAB87331.1| (AL163672) glycosyl transferase [Streptomyces coelicolor A3(2)]; COG0463 Glycosyltransferases involved in cell wall; hypothetical protein 1079991..1080200 Neisseria gonorrhoeae FA 1090 3282235 YP_208216.1 CDS NGO1137 NC_002946.2 1080185 1081147 D Best Blastp Hit: gb|AAC82509.1| (U65994) pilin gene inverting protein homolog PivNG [Neisseria gonorrhoeae]; invertase related gene 2, phage associated protein 1080185..1081147 Neisseria gonorrhoeae FA 1090 3282236 YP_208217.1 CDS NGO1138 NC_002946.2 1082262 1083347 R Best Blastp Hit: gb|AAF42092.1| (AE002524) conserved hypothetical protein [Neisseria meningitidis MC58]; phage associated protein complement(1082262..1083347) Neisseria gonorrhoeae FA 1090 3282234 YP_208218.1 CDS NGO1139 NC_002946.2 1083352 1083648 R Best Blastp Hit: gb|AAF42091.1| (AE002524) conserved hypothetical protein [Neisseria meningitidis MC58]; phage associated protein complement(1083352..1083648) Neisseria gonorrhoeae FA 1090 3282538 YP_208219.1 CDS NGO1140 NC_002946.2 1083649 1085172 R Best Blastp Hit: gb|AAF42090.1| (AE002524) tspB protein, [Neisseria meningitidis MC58]; TspB1; TspB-like protein complement(1083649..1085172) Neisseria gonorrhoeae FA 1090 3282213 YP_208220.1 CDS NGO1141 NC_002946.2 1085156 1085488 R Best Blastp Hit: pir||G81192 hypothetical protein NMB0481 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225710|gb|AAF40918.1| (AE002405) hypothetical protein [Neisseria meningitidis MC58] >gi|7380633|emb|CAB85223.1| (AL162757) hypothetical protein [Neisseria meningitidis]; phage associated protein complement(1085156..1085488) Neisseria gonorrhoeae FA 1090 3282198 YP_208221.1 CDS NGO1142 NC_002946.2 1085601 1085879 R Best Blastp Hit: pir||H81192 hypothetical protein NMB0482, NMB0974, NMB1745, NMA2003, NMA1171 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225711|gb|AAF40919.1| (AE002405) hypothetical protein [Neisseria meningitidis MC58] >gi|7226213|gb|AAF41378.1| (AE002448) hypothetical protein [Neisseria meningitidis MC58] >gi|7226999|gb|AAF42088.1| (AE002524) hypothetical protein [Neisseria meningitidis MC58] >gi|7379863|emb|CAB84433.1| (AL162755) hypothetical protein NMA1171 [Neisseria meningitidis] >gi|7380632|emb|CAB85222.1| (AL162757) hypothetical protein [Neisseria meningitidis]; phage associated protein complement(1085601..1085879) Neisseria gonorrhoeae FA 1090 3282237 YP_208222.1 CDS NGO1143 NC_002946.2 1085886 1086104 R Best Blastp Hit: emb|CAB84432.1| (AL162755) integral membrane protein [Neisseria meningitidis] >gi|7380631|emb|CAB85221.1| (AL162757) hypothetical protein [Neisseria meningitidis]; phage associated protein complement(1085886..1086104) Neisseria gonorrhoeae FA 1090 3282215 YP_208223.1 CDS NGO1144 NC_002946.2 1086190 1086393 R Best Blastp Hit: emb|CAB84063.1| (AL162754) hypothetical protein NMA0780 [Neisseria meningitidis]; phage associated protein complement(1086190..1086393) Neisseria gonorrhoeae FA 1090 3282221 YP_208224.1 CDS NGO1145 NC_002946.2 1086407 1086718 R Best Blastp Hit: pir||F81922 hypothetical protein NMA0781 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379502|emb|CAB84064.1| (AL162754) hypothetical protein NMA0781 [Neisseria meningitidis]; phage associated protein complement(1086407..1086718) Neisseria gonorrhoeae FA 1090 3282134 YP_208225.1 CDS NGO1146 NC_002946.2 1086789 1088060 R Best Blastp Hit: pir||G81922 probable phage replication protein NMA0782 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379503|emb|CAB84065.1| (AL162754) phage replication protein [Neisseria meningitidis]; phage associated protein complement(1086789..1088060) Neisseria gonorrhoeae FA 1090 3282144 YP_208226.1 CDS NGO1147 NC_002946.2 1088047 1088271 R Best Blastp Hit: emb|CAB84066.1| (AL162754) hypothetical protein NMA0783 [Neisseria meningitidis]; hypothetical protein complement(1088047..1088271) Neisseria gonorrhoeae FA 1090 3282143 YP_208227.1 CDS NGO1148 NC_002946.2 1088667 1088873 R Best Blastp Hit: emb|CAB85032.1| (AL162757) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(1088667..1088873) Neisseria gonorrhoeae FA 1090 3282313 YP_208228.1 CDS NGO1149 NC_002946.2 1088968 1090128 R Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); COG0626 Cystathionine; O-succinylhomoserine sulfhydrolase complement(1088968..1090128) Neisseria gonorrhoeae FA 1090 3282146 YP_208229.1 CDS NGO1150 NC_002946.2 1090274 1091044 R Best Blastp Hit: pir||F81806 hypothetical protein NMA1809 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380448|emb|CAB85034.1| (AL162757) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(1090274..1091044) Neisseria gonorrhoeae FA 1090 3282159 YP_208230.1 CDS NGO1151 NC_002946.2 1091146 1091397 D Best Blastp Hit: gb|AAF41963.1| (AE002511) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1091146..1091397 Neisseria gonorrhoeae FA 1090 3282163 YP_208231.1 CDS NGO1152 NC_002946.2 1091449 1092255 D Best Blastp Hit: sp|Q06758|HISJ_NEIGO histidine-binding protein precursor (HBP) >gi|95363|pir||S19184 hypothetical protein - Neisseria gonorrhoeae >gi|49068|emb|CAA45768.1| (X64421) gene homologous to hisJ (E.coli) and argT (S.typhimurium) [Neisseria gonorrhoeae]; COG0834 Periplasmic amino acid binding proteins; ABC transporter periplasmic histidine-binding protein precursor 1091449..1092255 Neisseria gonorrhoeae FA 1090 3282217 YP_208232.1 CDS trkA NC_002946.2 1094183 1095595 D involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 1094183..1095595 Neisseria gonorrhoeae FA 1090 3282230 YP_208233.1 CDS NGO1155 NC_002946.2 1096079 1096537 R Best Blastp Hit: pir||G64866 probable membrane protein b1202 - Escherichia coli >gi|1787452|gb|AAC74286.1| (AE000218) adhesion and penetration protein [Escherichia coli]; hypothetical protein complement(1096079..1096537) Neisseria gonorrhoeae FA 1090 3282168 YP_208234.1 CDS NGO1156 NC_002946.2 1096627 1097481 R Best Blastp Hit: pir||G64866 probable membrane protein b1202 - Escherichia coli >gi|1787452|gb|AAC74286.1| (AE000218) adhesion and penetration protein [Escherichia coli]; hypothetical protein complement(1096627..1097481) Neisseria gonorrhoeae FA 1090 3282207 YP_208235.1 CDS NGO1157 NC_002946.2 1097814 1098467 D Best Blastp Hit: pir||G81087 IS1016C2 transposase NMB1411 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226649|gb|AAF41773.1| (AE002489) IS1016C2 transposase [Neisseria meningitidis MC58]; IS1016 transposase 1097814..1098467 Neisseria gonorrhoeae FA 1090 3282205 YP_208236.1 CDS NGO1158 NC_002946.2 1098435 1099703 R hypothetical protein complement(1098435..1099703) Neisseria gonorrhoeae FA 1090 3282228 YP_208237.1 CDS NGO1159 NC_002946.2 1100191 1100343 R hypothetical protein complement(1100191..1100343) Neisseria gonorrhoeae FA 1090 3282208 YP_208238.1 CDS NGO1160 NC_002946.2 1100403 1101209 D catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 1100403..1101209 Neisseria gonorrhoeae FA 1090 3282238 YP_208239.1 CDS NGO1161 NC_002946.2 1101267 1102136 R with TehA confers resistance to tellurite; tellurite resistance protein TehB complement(1101267..1102136) Neisseria gonorrhoeae FA 1090 3281908 YP_208240.1 CDS rnhA NC_002946.2 1102249 1102686 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 1102249..1102686 Neisseria gonorrhoeae FA 1090 3282266 YP_208241.1 CDS NGO1163 NC_002946.2 1102723 1102881 D hypothetical protein 1102723..1102881 Neisseria gonorrhoeae FA 1090 3281954 YP_208242.1 CDS NGO1164 NC_002946.2 1103017 1103979 R Best Blastp Hit: Frame shift fixed; invertase related gene 3, phage associated protein; Irg3 complement(1103017..1103979) Neisseria gonorrhoeae FA 1090 3281824 YP_208243.1 CDS NGO1165 NC_002946.2 1104972 1106057 R Best Blastp Hit: gb|AAF42092.1| (AE002524) conserved hypothetical protein [Neisseria meningitidis MC58]; phage associated protein complement(1104972..1106057) Neisseria gonorrhoeae FA 1090 3281958 YP_208244.1 CDS NGO1166 NC_002946.2 1106062 1106358 R Best Blastp Hit: gb|AAF42091.1| (AE002524) conserved hypothetical protein [Neisseria meningitidis MC58]; phage associated protein complement(1106062..1106358) Neisseria gonorrhoeae FA 1090 3281900 YP_208245.1 CDS NGO1167 NC_002946.2 1106359 1107939 R Best Blastp Hit: gb|AAF42090.1| (AE002524) tspB protein, [Neisseria meningitidis MC58]; protein TspB2; TspB-like protein complement(1106359..1107939) Neisseria gonorrhoeae FA 1090 3281926 YP_208246.1 CDS NGO1168 NC_002946.2 1108606 1108890 R Best Blastp Hit: emb|CAB84432.1| (AL162755) integral membrane protein [Neisseria meningitidis] >gi|7380631|emb|CAB85221.1| (AL162757) hypothetical protein [Neisseria meningitidis]; phage associated protein complement(1108606..1108890) Neisseria gonorrhoeae FA 1090 3281949 YP_208247.1 CDS NGO1169 NC_002946.2 1108898 1109095 R Best Blastp Hit: gb|AAF40920.1| (AE002405) hypothetical protein [Neisseria meningitidis MC58] >gi|7226211|gb|AAF41376.1| (AE002448) hypothetical protein [Neisseria meningitidis MC58] >gi|7226997|gb|AAF42086.1| (AE002524) hypothetical protein [Neisseria meningitidis MC58] >gi|7379861|emb|CAB84431.1| (AL162755) hypothetical protein NMA1169 [Neisseria meningitidis] >gi|7380630|emb|CAB85220.1| (AL162757) hypothetical protein [Neisseria meningitidis]; phage associated protein complement(1108898..1109095) Neisseria gonorrhoeae FA 1090 3281939 YP_208248.1 CDS NGO1170 NC_002946.2 1109100 1109444 R Best Blastp Hit: pir||C81829 hypothetical protein NMA2000 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7379860|emb|CAB84430.1| (AL162755) hypothetical protein NMA1168 [Neisseria meningitidis] >gi|7380629|emb|CAB85219.1| (AL162757) hypothetical protein [Neisseria meningitidis]; phage associated protein complement(1109100..1109444) Neisseria gonorrhoeae FA 1090 3281837 YP_208249.1 CDS NGO1173 NC_002946.2 1110897 1111319 R Best Blastp Hit: pir||H81959 patch repair protein (EC 3.1.-.-) NMA0429 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379179|emb|CAB83728.1| (AL162753) patch repair protein [Neisseria meningitidis]; DNA mismatch endonuclease, patch repair protein complement(1110897..1111319) Neisseria gonorrhoeae FA 1090 3281942 YP_208250.1 CDS NGO1176 NC_002946.2 1114327 1114473 D hypothetical protein 1114327..1114473 Neisseria gonorrhoeae FA 1090 3281940 YP_208251.1 CDS NGO1177 NC_002946.2 1114850 1115299 R Best Blastp Hit: gb|AAF62338.1| (AE002551) type IV pilin-related protein [Neisseria meningitidis MC58]; hypothetical protein complement(1114850..1115299) Neisseria gonorrhoeae FA 1090 3281950 YP_208252.1 CDS NGO1178 NC_002946.2 1115387 1115686 R COG1555 DNA uptake protein ComEA and related; DNA-binding competence protein 1; ComE1 complement(1115387..1115686) Neisseria gonorrhoeae FA 1090 3281994 YP_208253.1 CDS NGO1179 NC_002946.2 1121383 1121601 D Best Blastp Hit: emb|CAB85400.1| (AL162758) hypothetical protein [Neisseria meningitidis]; hypothetical protein 1121383..1121601 Neisseria gonorrhoeae FA 1090 3281986 YP_208254.1 CDS NGO1182 NC_002946.2 1123800 1124138 R Best Blastp Hit: pir||B81019 nitrogen regulatory protein P-II NMB1995 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227257|gb|AAF42322.1| (AE002548) nitrogen regulatory protein P-II [Neisseria meningitidis MC58]; COG0347 Nitrogen regulatory protein PII; nitrogen regulatory protein P-II complement(1123800..1124138) Neisseria gonorrhoeae FA 1090 3281822 YP_208255.1 CDS NGO1183 NC_002946.2 1124290 1128246 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1124290..1128246 Neisseria gonorrhoeae FA 1090 3281977 YP_208256.1 CDS NGO1184 NC_002946.2 1128345 1129463 R Best Blastp Hit: pir||G75287 NADH oxidase-related protein - Deinococcus radiodurans (strain R1) >gi|6460144|gb|AAF11879.1|AE002064_10 (AE002064) NADH oxidase-related protein [Deinococcus radiodurans]; COG1902 NADH:flavin oxidoreductases, Old Yellow; hypothetical protein complement(1128345..1129463) Neisseria gonorrhoeae FA 1090 3281952 YP_208257.1 CDS NGO1185 NC_002946.2 1129602 1129913 R Best Blastp Hit: pir||D70029 transcription regulator ArsR family homolog yvbA - Bacillus subtilis >gi|2635892|emb|CAB15384.1| (Z99121) similar to transcriptional regulator (ArsR family) [Bacillus subtilis]; COG0640 Predicted transcriptional regulators; ArsR family transcriptional regulator complement(1129602..1129913) Neisseria gonorrhoeae FA 1090 3281880 YP_208258.1 CDS NGO1186 NC_002946.2 1129938 1130132 R hypothetical protein complement(1129938..1130132) Neisseria gonorrhoeae FA 1090 3281826 YP_208259.1 CDS NGO1187 NC_002946.2 1130145 1130897 D Best Blastp Hit: emb|CAB83742.1| (AL162753) hydroxyacylglutathione hydrolase [Neisseria meningitidis]; COG0491 Zn-dependent hydrolases, including; hypothetical protein 1130145..1130897 Neisseria gonorrhoeae FA 1090 3281978 YP_208260.1 CDS NGO1188 NC_002946.2 1131131 1132585 D protein MgtE; magnesium transporter 1131131..1132585 Neisseria gonorrhoeae FA 1090 3281981 YP_208261.1 CDS hslO NC_002946.2 1132671 1133579 R becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin complement(1132671..1133579) Neisseria gonorrhoeae FA 1090 3281975 YP_208262.1 CDS NGO1190 NC_002946.2 1133860 1134492 D Best Blastp Hit: gb|AAF44765.1|AF235148_1 (AF235148) GNA2001 [Neisseria gonorrhoeae] >gi|7274424|gb|AAF44767.1|AF235150_1 (AF235150) GNA2001 [Neisseria gonorrhoeae]; COG0791 Cell wall-associated hydrolases; genome-derived Neisseria antigen 2001 1133860..1134492 Neisseria gonorrhoeae FA 1090 3282026 YP_208263.1 CDS NGO1191 NC_002946.2 1134511 1134729 D Best Blastp Hit: gb|AAF42329.1| (AE002550) hypothetical protein [Neisseria meningitidis MC58] >gi|7379189|emb|CAB83738.1| (AL162753) hypothetical protein [Neisseria meningitidis]; hypothetical protein 1134511..1134729 Neisseria gonorrhoeae FA 1090 3282036 YP_208264.1 CDS NGO1192 NC_002946.2 1134874 1135218 D Best Blastp Hit: pir||H81960 hypothetical inner membrane protein NMA0437 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379187|emb|CAB83736.1| (AL162753) hypothetical inner membrane protein [Neisseria meningitidis]; COG1380 Predicted membrane protein, YohJ family; hypothetical protein 1134874..1135218 Neisseria gonorrhoeae FA 1090 3281957 YP_208265.1 CDS NGO1193 NC_002946.2 1135218 1135910 D Best Blastp Hit: pir||B81017 conserved hypothetical protein NMB2004 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227268|gb|AAF42331.1| (AE002550) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1346 Predicted membrane protein, YohK family; hypothetical protein 1135218..1135910 Neisseria gonorrhoeae FA 1090 3282031 YP_208266.1 CDS argJ NC_002946.2 1135977 1137197 D bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 1135977..1137197 Neisseria gonorrhoeae FA 1090 3282038 YP_208267.1 CDS NGO1195 NC_002946.2 1137257 1138666 D Best Blastp Hit: >pir||D81017 chloride channel protein-related protein NMB2006 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) gb|AAF42333.1| (AE002550) chloride channel protein-related protein [Neisseria meningitidis MC58] emb|CAB83733.1| (AL162753) hypothetical inner membrane protein [Neisseria meningitidis Z2491]; hypothetical protein 1137257..1138666 Neisseria gonorrhoeae FA 1090 3282040 YP_208268.1 CDS NGO1196 NC_002946.2 1138854 1140245 D Best Blastp Hit: 0e+00 2213 95%/97% 501/463aa gi|7379183|emb|CAB83732.1| (AL162753) ATP-dependent DNA helicase [Neisseria meningitidis]; COG1643 HrpA-like helicases; ATP-dependent DNA helicase-like protein 1138854..1140245 Neisseria gonorrhoeae FA 1090 3282035 YP_208269.1 CDS NGO1197 NC_002946.2 1140196 1141815 D Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); hypothetical protein 1140196..1141815 Neisseria gonorrhoeae FA 1090 3281976 YP_208270.1 CDS NGO1198 NC_002946.2 1142045 1143619 D Best Blastp Hit: gb|AAF42335.1| (AE002550) YhbX/YhjW/YijP/YjdB family protein [Neisseria meningitidis MC58]; COG2194 Predicted membrane-associated; hypothetical protein 1142045..1143619 Neisseria gonorrhoeae FA 1090 3281951 YP_208271.1 CDS NGO1199 NC_002946.2 1143685 1146915 D Best Blastp Hit: emb|CAB83729.1| (AL162753) DNA helicase [Neisseria meningitidis]; COG1643 HrpA-like helicases; HrpA protein; ATP dependent DNA helicase 1143685..1146915 Neisseria gonorrhoeae FA 1090 3281887 YP_208272.1 CDS NGO1200 NC_002946.2 1147035 1147997 R Best Blastp Hit: gb|AAC82509.1| (U65994) pilin gene inverting protein homolog PivNG [Neisseria gonorrhoeae]; invertase related gene 4; Irg4 complement(1147035..1147997) Neisseria gonorrhoeae FA 1090 3281830 YP_208273.1 CDS NGO1201 NC_002946.2 1148343 1148453 R Best Blastp Hit: emb|CAB84427.1| (AL162755) hypothetical protein NMA1165 [Neisseria meningitidis]; hypothetical protein complement(1148343..1148453) Neisseria gonorrhoeae FA 1090 3281963 YP_208274.1 CDS trpD NC_002946.2 1149327 1150355 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(1149327..1150355) Neisseria gonorrhoeae FA 1090 3281967 YP_208275.1 CDS NGO1204 NC_002946.2 1150419 1151009 R TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II complement(1150419..1151009) Neisseria gonorrhoeae FA 1090 3281971 YP_208276.1 CDS NGO1205 NC_002946.2 1151402 1153696 D Best Blastp Hit: emb|CAB84423.1| (AL162755) outer-membrane receptor protein [Neisseria meningitidis]; COG1629 Outer membrane receptor proteins, mostly Fe; TonB-dependent receptor protein 1151402..1153696 Neisseria gonorrhoeae FA 1090 3282028 YP_208277.1 CDS NGO1206 NC_002946.2 1154088 1154867 R catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase complement(1154088..1154867) Neisseria gonorrhoeae FA 1090 3281969 YP_208278.1 CDS uvrA NC_002946.2 1155021 1157870 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 1155021..1157870 Neisseria gonorrhoeae FA 1090 3282862 YP_208279.1 CDS NGO1208 NC_002946.2 1157888 1158529 D Best Blastp Hit: gb|AAG17897.1|AF297971_1 (AF297971) restriction endonuclease R.NgoMIII [Neisseria gonorrhoeae]; NgoMIIIM 1157888..1158529 Neisseria gonorrhoeae FA 1090 3281869 YP_208280.1 CDS NGO1209 NC_002946.2 1158533 1159666 D Best Blastp Hit: possibly phase variable - two 8A residue homopolymer repeats in the the coding sequence (ON); COG0270 Site-specific DNA methylase dcm; DNA cytosine methyltransferase M.NgoMIII 1158533..1159666 Neisseria gonorrhoeae FA 1090 3281877 YP_208281.1 CDS NGO1210 NC_002946.2 1159776 1160162 D Best Blastp Hit: emb|CAB84417.1| (AL162755) hypothetical protein NMA1155 [Neisseria meningitidis]; COG1943 Predicted transposase; hypothetical protein 1159776..1160162 Neisseria gonorrhoeae FA 1090 3281828 YP_208282.1 CDS NGO1211 NC_002946.2 1160159 1160812 R Best Blastp Hit: pir||G81087 IS1016C2 transposase NMB1411 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226649|gb|AAF41773.1| (AE002489) IS1016C2 transposase [Neisseria meningitidis MC58]; IS1016 transposase complement(1160159..1160812) Neisseria gonorrhoeae FA 1090 3281917 YP_208283.1 CDS pyrG NC_002946.2 1160954 1162588 R CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(1160954..1162588) Neisseria gonorrhoeae FA 1090 3281956 YP_208284.1 CDS NGO1213 NC_002946.2 1162700 1164370 R Best Blastp Hit: pir||H81068 long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) NMB1555 [similarity] - Neisseria meningitidis (group B strain MD58) >gi|7226802|gb|AAF41909.1| (AE002506) long-chain-fatty-acid--CoA ligase [Neisseria meningitidis MC58]; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid; long-chain-fatty-acid--CoA-ligase complement(1162700..1164370) Neisseria gonorrhoeae FA 1090 3281827 YP_208285.1 CDS mnmA NC_002946.2 1164441 1165592 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(1164441..1165592) Neisseria gonorrhoeae FA 1090 3281906 YP_208286.1 CDS NGO1215 NC_002946.2 1165669 1166142 R Best Blastp Hit: pir||A81799 hypothetical protein NMA1745 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380387|emb|CAB84973.1| (AL162757) hypothetical protein NMA1745 [Neisseria meningitidis]; hypothetical protein complement(1165669..1166142) Neisseria gonorrhoeae FA 1090 3281873 YP_208287.1 CDS NGO1216 NC_002946.2 1166274 1166657 R Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); COG0818 Diacylglycerol kinase; diacylglycerol kinase complement(1166274..1166657) Neisseria gonorrhoeae FA 1090 3281842 YP_208288.1 CDS NGO1217 NC_002946.2 1166816 1167775 R catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase complement(1166816..1167775) Neisseria gonorrhoeae FA 1090 3281935 YP_208289.1 CDS NGO1218 NC_002946.2 1167864 1169585 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(1167864..1169585) Neisseria gonorrhoeae FA 1090 3281964 YP_208290.1 CDS NGO1219 NC_002946.2 1169664 1170437 R Best Blastp Hit: gb|AAF41915.1| (AE002506) transcriptional regulator, DeoR family [Neisseria meningitidis MC58]; COG1349 Transcriptional regulators of sugar; DeoR family transcriptional regulator complement(1169664..1170437) Neisseria gonorrhoeae FA 1090 3281982 YP_208291.1 CDS NGO1220 NC_002946.2 1170480 1171382 R Best Blastp Hit: pir||G81069 conserved hypothetical protein NMB1562 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226809|gb|AAF41916.1| (AE002506) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1170480..1171382) Neisseria gonorrhoeae FA 1090 3281998 YP_208292.1 CDS NGO1221 NC_002946.2 1171531 1172247 R Best Blastp Hit: gb|AAF41917.1| (AE002506) transcriptional regulator, GntR family [Neisseria meningitidis MC58] >gi|7380393|emb|CAB84979.1| (AL162757) gntR-family transcriptional regulator [Neisseria meningitidis]; COG1802 Transcriptional regulators, GntR family; GntR family transcriptional regulator complement(1171531..1172247) Neisseria gonorrhoeae FA 1090 3281966 YP_208293.1 CDS NGO1222 NC_002946.2 1172769 1173119 R Best Blastp Hit: pir||A81800 hypothetical protein NMA1753 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380395|emb|CAB84981.1| (AL162757) hypothetical protein [Neisseria meningitidis]; COG1765 Uncharacterized ACR; hypothetical protein complement(1172769..1173119) Neisseria gonorrhoeae FA 1090 3281999 YP_208294.1 CDS NGO1223 NC_002946.2 1173309 1173980 R Best Blastp Hit: pir||A81068 hypothetical protein NMB1565 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226813|gb|AAF41919.1| (AE002507) hypothetical protein [Neisseria meningitidis MC58] >gi|7380396|emb|CAB84982.1| (AL162757) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(1173309..1173980) Neisseria gonorrhoeae FA 1090 3281863 YP_208295.1 CDS NGO1224 NC_002946.2 1173996 1174622 R Best Blastp Hit: pir||C81800 phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) NMA1755 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380397|emb|CAB84983.1| (AL162757) phosphoribosylglycinamide transformylase [Neisseria meningitidis]; COG0299 Folate-dependent; phosphoribosylglycinamidetransformylase complement(1173996..1174622) Neisseria gonorrhoeae FA 1090 3281934 YP_208296.1 CDS NGO1225 NC_002946.2 1174729 1175547 R Best Blastp Hit: gb|AAF41921.1| (AE002507) macrophage infectivity potentiator [Neisseria meningitidis MC58]; COG0545 FKBP-type peptidyl-prolyl cis-trans; peptidyl-prolylisomerase complement(1174729..1175547) Neisseria gonorrhoeae FA 1090 3281825 YP_208297.1 CDS NGO1226 NC_002946.2 1175807 1176247 R Best Blastp Hit: pir||E81800 DNA-directed DNA polymerase (EC 2.7.7.7) III chi chain NMA1757 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380399|emb|CAB84985.1| (AL162757) DNA polymerase III chi subunit [Neisseria meningitidis]; HolC; DNA polymerase III subunit chi complement(1175807..1176247) Neisseria gonorrhoeae FA 1090 3282151 YP_208298.1 CDS NGO1227 NC_002946.2 1176310 1177716 R Best Blastp Hit: pir||F81800 leucyl aminopeptidase (EC 3.4.11.1) NMA1758 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380400|emb|CAB84986.1| (AL162757) aminopeptidase A [Neisseria meningitidis]; COG0260 Leucyl aminopeptidase; AmpA complement(1176310..1177716) Neisseria gonorrhoeae FA 1090 3282045 YP_208299.1 CDS NGO1228 NC_002946.2 1177890 1179005 D Best Blastp Hit: emb|CAB84987.1| (AL162757) conserved integral membrane hypothetical protein [Neisseria meningitidis]; COG0795 Predicted permeases; hypothetical protein 1177890..1179005 Neisseria gonorrhoeae FA 1090 3281847 YP_208300.1 CDS NGO1229 NC_002946.2 1179002 1180072 D Best Blastp Hit: emb|CAB84988.1| (AL162757) conserved hypothetical integral membrane protein [Neisseria meningitidis]; COG0795 Predicted permeases; hypothetical protein 1179002..1180072 Neisseria gonorrhoeae FA 1090 3282044 YP_208301.1 CDS NGO1230 NC_002946.2 1180077 1180238 D Best Blastp Hit: gb|AAF42247.1| (AE002540) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1180077..1180238 Neisseria gonorrhoeae FA 1090 3282017 YP_208302.1 CDS NGO1231 NC_002946.2 1180387 1182972 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 1180387..1182972 Neisseria gonorrhoeae FA 1090 3282479 YP_208303.1 CDS NGO1232 NC_002946.2 1183114 1184109 D catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase 1183114..1184109 Neisseria gonorrhoeae FA 1090 3282465 YP_208304.1 CDS NGO1233 NC_002946.2 1184228 1185241 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(1184228..1185241) Neisseria gonorrhoeae FA 1090 3282497 YP_208305.1 CDS NGO1234 NC_002946.2 1185321 1185614 R Best Blastp Hit: emb|CAB84992.1| (AL162757) conserved hypothetical protein [Neisseria meningitidis]; COG1359 Uncharacterized ACR, YneC family; hypothetical protein complement(1185321..1185614) Neisseria gonorrhoeae FA 1090 3281870 YP_208306.1 CDS ilvH NC_002946.2 1185681 1186172 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(1185681..1186172) Neisseria gonorrhoeae FA 1090 3282490 YP_208307.1 CDS NGO1236 NC_002946.2 1186183 1187910 R Best Blastp Hit: pir||F81801 acetolactate synthase (EC 4.1.3.18) III large chain NMA1766 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380408|emb|CAB84994.1| (AL162757) acetolactate synthase isozyme III large subunit [Neisseria meningitidis]; COG0028 Thiamine pyrophosphate-requiring enzymes; IlvI complement(1186183..1187910) Neisseria gonorrhoeae FA 1090 3282600 YP_208308.1 CDS NGO1237 NC_002946.2 1188975 1189628 D Best Blastp Hit: gb|AAF41931.1| (AE002508) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1999 Uncharacterized protein SCO1/SenC/PrrC; hypothetical protein 1188975..1189628 Neisseria gonorrhoeae FA 1090 3282589 YP_208309.1 CDS hisG NC_002946.2 1189707 1190372 D short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase 1189707..1190372 Neisseria gonorrhoeae FA 1090 3282595 YP_208310.1 CDS NGO1239 NC_002946.2 1190464 1191351 D Best Blastp Hit: pir||D81067 hypothetical protein NMB1580, NMA1769 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226828|gb|AAF41933.1| (AE002508) hypothetical protein [Neisseria meningitidis MC58] >gi|7380411|emb|CAB84997.1| (AL162757) hypothetical protein [Neisseria meningitidis]; hypothetical protein 1190464..1191351 Neisseria gonorrhoeae FA 1090 3282481 YP_208311.1 CDS hisD NC_002946.2 1191348 1192637 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1191348..1192637 Neisseria gonorrhoeae FA 1090 3282462 YP_208312.1 CDS NGO1241 NC_002946.2 1192683 1193762 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1192683..1193762 Neisseria gonorrhoeae FA 1090 3281832 YP_208313.1 CDS hisB NC_002946.2 1193956 1194690 D catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 1193956..1194690 Neisseria gonorrhoeae FA 1090 3281972 YP_208314.1 CDS NGO1243 NC_002946.2 1194766 1195635 D Best Blastp Hit: emb|CAB85001.1| (AL162757) hypothetical protein [Neisseria meningitidis]; COG2084 3-hydroxyisobutyrate dehydrogenase and; hypothetical protein 1194766..1195635 Neisseria gonorrhoeae FA 1090 3282154 YP_208315.1 CDS NGO1244 NC_002946.2 1195870 1196301 D Best Blastp Hit: gb|AAF41938.1| (AE002509) transcriptional regulator, MarR family [Neisseria meningitidis MC58]; COG1846 Transcriptional regulators, MarR/EmrR; MarR family transcriptional regulator 1195870..1196301 Neisseria gonorrhoeae FA 1090 3282613 YP_208316.1 CDS NGO1245 NC_002946.2 1196312 1197178 D Best Blastp Hit: pir||D81065 hypothetical protein NMB1586 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226835|gb|AAF41939.1| (AE002509) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1196312..1197178 Neisseria gonorrhoeae FA 1090 3282602 YP_208317.1 CDS NGO1246 NC_002946.2 1197229 1198281 R SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease complement(1197229..1198281) Neisseria gonorrhoeae FA 1090 3282608 YP_208318.1 CDS NGO1247 NC_002946.2 1199032 1199595 R Best Blastp Hit: pir||C81803 CDPdiacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) NMA1779 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380421|emb|CAB85007.1| (AL162757) CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Neisseria meningitidis]; COG0558 Phosphatidylglycerophosphate synthase; hypothetical protein complement(1199032..1199595) Neisseria gonorrhoeae FA 1090 3282598 YP_208319.1 CDS NGO1248 NC_002946.2 1199701 1200123 R Best Blastp Hit: pir||E81803 hypothetical protein NMA1781 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380423|emb|CAB85009.1| (AL162757) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(1199701..1200123) Neisseria gonorrhoeae FA 1090 3281833 YP_208320.1 CDS NGO1249 NC_002946.2 1200302 1200637 R Best Blastp Hit: pir||H81065 conserved hypothetical protein NMB1590 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226839|gb|AAF41943.1| (AE002509) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0599 Uncharacterized ACR, homolog; hypothetical protein complement(1200302..1200637) Neisseria gonorrhoeae FA 1090 3282483 YP_208321.1 CDS NGO1250 NC_002946.2 1200818 1201660 D Best Blastp Hit: gb|AAD44696.1|AF128630_1 (AF128630) MtrA [Neisseria gonorrhoeae] >gi|7228474|gb|AAF42471.1|AF133676_1 (AF133676) MtrA [Neisseria gonorrhoeae]; COG2207 AraC-type DNA-binding domain-containing; mtrCDE transcriptional activator 1200818..1201660 Neisseria gonorrhoeae FA 1090 3282477 YP_208322.1 CDS NGO1251 NC_002946.2 1201722 1202300 R Best Blastp Hit: pir||H81803 hypothetical protein NMA1784 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380426|emb|CAB85012.1| (AL162757) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(1201722..1202300) Neisseria gonorrhoeae FA 1090 3282597 YP_208323.1 CDS NGO1252 NC_002946.2 1202358 1203260 D Best Blastp Hit: emb|CAB85013.1| (AL162757) conserved hypothetical integral membrane protein [Neisseria meningitidis]; COG0697 Predicted permeases; hypothetical protein 1202358..1203260 Neisseria gonorrhoeae FA 1090 3281854 YP_208324.1 CDS NGO1253 NC_002946.2 1203301 1204431 R Best Blastp Hit: pir||D81066 spermidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein NMB1594 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226843|gb|AAF41947.1| (AE002509) spermidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein [Neisseria meningitidis MC58]; COG0687 Spermidine/putrescine-binding periplasmic; ABC transporter periplasmic binding protein, polyamine complement(1203301..1204431) Neisseria gonorrhoeae FA 1090 3281807 YP_208325.1 CDS alaS NC_002946.2 1204635 1207259 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1204635..1207259 Neisseria gonorrhoeae FA 1090 3281829 YP_208326.1 CDS NGO1255 NC_002946.2 1207321 1207662 D Best Blastp Hit: pir||D81804 hypothetical protein NMA1789 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380430|emb|CAB85016.1| (AL162757) hypothetical protein [Neisseria meningitidis]; hypothetical protein 1207321..1207662 Neisseria gonorrhoeae FA 1090 3282586 YP_208327.1 CDS NGO1256 NC_002946.2 1208062 1208715 D Best Blastp Hit: pir||G81087 IS1016C2 transposase NMB1411 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226649|gb|AAF41773.1| (AE002489) IS1016C2 transposase [Neisseria meningitidis MC58]; IS1016 transposase 1208062..1208715 Neisseria gonorrhoeae FA 1090 3281786 YP_208328.1 CDS NGO1257 NC_002946.2 1209532 1209675 R hypothetical protein complement(1209532..1209675) Neisseria gonorrhoeae FA 1090 3281839 YP_208329.1 CDS gpmA NC_002946.2 1209692 1210375 R 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(1209692..1210375) Neisseria gonorrhoeae FA 1090 3282177 YP_208330.1 CDS NGO1259 NC_002946.2 1210524 1212827 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1210524..1212827 Neisseria gonorrhoeae FA 1090 3281849 YP_208331.1 CDS NGO1260 NC_002946.2 1212847 1214571 D Best Blastp Hit: gb|AAC82507.1| (U65994) Rsp [Neisseria gonorrhoeae]; COG2204 AAA superfamily ATPases with N-terminal; transcriptional regulator; Rsp 1212847..1214571 Neisseria gonorrhoeae FA 1090 3282591 YP_208332.1 CDS NGO1261 NC_002946.2 1214671 1215423 D Best Blastp Hit: sp|P72077|YHIQ_NEIGO hypothetical 27.3 KD protein >gi|3851182|gb|AAC82508.1| (U65994) unknown [Neisseria gonorrhoeae]; COG0500 SAM-dependent methyltransferases; hypothetical protein 1214671..1215423 Neisseria gonorrhoeae FA 1090 3282590 YP_208333.1 CDS NGO1262 NC_002946.2 1215967 1216929 R Best Blastp Hit: gb|AAC82509.1| (U65994) pilin gene inverting protein homolog PivNG [Neisseria gonorrhoeae]; invertase related gene 5, phage associated protein; Irg5 complement(1215967..1216929) Neisseria gonorrhoeae FA 1090 3281859 YP_208334.1 CDS NGO1263 NC_002946.2 1217922 1219007 R Best Blastp Hit: gb|AAF42092.1| (AE002524) conserved hypothetical protein [Neisseria meningitidis MC58]; phage associated protein complement(1217922..1219007) Neisseria gonorrhoeae FA 1090 3281840 YP_208335.1 CDS NGO1264 NC_002946.2 1219017 1219307 R Best Blastp Hit: gb|AAF42091.1| (AE002524) conserved hypothetical protein [Neisseria meningitidis MC58]; phage associated protein complement(1219017..1219307) Neisseria gonorrhoeae FA 1090 3281885 YP_208336.1 CDS NGO1265 NC_002946.2 1219308 1220831 R Best Blastp Hit: gb|AAF42090.1| (AE002524) tspB protein, [Neisseria meningitidis MC58]; protein TspB3; TspB-like protein complement(1219308..1220831) Neisseria gonorrhoeae FA 1090 3282070 YP_208337.1 CDS NGO1266 NC_002946.2 1220815 1221147 R Best Blastp Hit: pir||G81192 hypothetical protein NMB0481 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225710|gb|AAF40918.1| (AE002405) hypothetical protein [Neisseria meningitidis MC58] >gi|7380633|emb|CAB85223.1| (AL162757) hypothetical protein [Neisseria meningitidis]; phage associated protein complement(1220815..1221147) Neisseria gonorrhoeae FA 1090 3281801 YP_208338.1 CDS NGO1267 NC_002946.2 1221260 1221538 R Best Blastp Hit: pir||H81192 hypothetical protein NMB0482, NMB0974, NMB1745, NMA2003, NMA1171 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225711|gb|AAF40919.1| (AE002405) hypothetical protein [Neisseria meningitidis MC58] >gi|7226213|gb|AAF41378.1| (AE002448) hypothetical protein [Neisseria meningitidis MC58] >gi|7226999|gb|AAF42088.1| (AE002524) hypothetical protein [Neisseria meningitidis MC58] >gi|7379863|emb|CAB84433.1| (AL162755) hypothetical protein NMA1171 [Neisseria meningitidis] >gi|7380632|emb|CAB85222.1| (AL162757) hypothetical protein [Neisseria meningitidis]; phage associated protein complement(1221260..1221538) Neisseria gonorrhoeae FA 1090 3282066 YP_208339.1 CDS NGO1268 NC_002946.2 1221545 1221829 R Best Blastp Hit: emb|CAB84432.1| (AL162755) integral membrane protein [Neisseria meningitidis] >gi|7380631|emb|CAB85221.1| (AL162757) hypothetical protein [Neisseria meningitidis]; phage associated protein complement(1221545..1221829) Neisseria gonorrhoeae FA 1090 3282067 YP_208340.1 CDS NGO1269 NC_002946.2 1221837 1222034 R Best Blastp Hit: gb|AAF40920.1| (AE002405) hypothetical protein [Neisseria meningitidis MC58] >gi|7226211|gb|AAF41376.1| (AE002448) hypothetical protein [Neisseria meningitidis MC58] >gi|7226997|gb|AAF42086.1| (AE002524) hypothetical protein [Neisseria meningitidis MC58] >gi|7379861|emb|CAB84431.1| (AL162755) hypothetical protein NMA1169 [Neisseria meningitidis] >gi|7380630|emb|CAB85220.1| (AL162757) hypothetical protein [Neisseria meningitidis]; phage associated protein complement(1221837..1222034) Neisseria gonorrhoeae FA 1090 3282172 YP_208341.1 CDS NGO1270 NC_002946.2 1222039 1222383 R Best Blastp Hit: pir||C81829 hypothetical protein NMA2000 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7379860|emb|CAB84430.1| (AL162755) hypothetical protein NMA1168 [Neisseria meningitidis] >gi|7380629|emb|CAB85219.1| (AL162757) hypothetical protein [Neisseria meningitidis]; phage associated protein complement(1222039..1222383) Neisseria gonorrhoeae FA 1090 3282173 YP_208342.1 CDS NGO1273 NC_002946.2 1224369 1224773 D Best Blastp Hit: emb|CAB85043.1| (AL162757) hypothetical protein [Neisseria meningitidis]; COG0537 Diadenosine tetraphosphate (Ap4A); hypothetical protein 1224369..1224773 Neisseria gonorrhoeae FA 1090 3282068 YP_208343.1 CDS NGO1274 NC_002946.2 1224813 1225994 D Best Blastp Hit: pir||H81807 conserved hypothetical protein NMA1819 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|6900400|emb|CAB72012.1| (AJ391256) hypothetical protein [Neisseria meningitidis] >gi|7380458|emb|CAB85044.1| (AL162757) conserved hypothetical protein [Neisseria meningitidis]; COG1619 Uncharacterized proteins, homologs of; hypothetical protein 1224813..1225994 Neisseria gonorrhoeae FA 1090 3282079 YP_208344.1 CDS NGO1275 NC_002946.2 1226096 1228207 R Best Blastp Hit: emb|CAB85109.1| (AL162757) nitric oxide reductase [Neisseria meningitidis]; protein NorB; nitric oxide reductase complement(1226096..1228207) Neisseria gonorrhoeae FA 1090 3282085 YP_208345.1 CDS NGO1276 NC_002946.2 1228725 1229903 D Best Blastp Hit: sp|Q02219|ANIA_NEIGO major outer membrane protein PAN 1 precursor >gi|477564|pir||A49208 outer membrane protein Pan 1 - Neisseria gonorrhoeae >gi|150277|gb|AAA25462.1| (M97926) major anaerobically induced outer membrane protein [Neisseria gonorrhoeae] >gi|258387|gb|AAB23836.1| Pan 1=outer membrane protein [Neisseria gonorrhoeae, Peptide, 392 aa]; protein AniA; nitrite reductase 1228725..1229903 Neisseria gonorrhoeae FA 1090 3282097 YP_208346.1 CDS NGO1277 NC_002946.2 1230081 1230836 D Best Blastp Hit: gb|AAF62335.1| (AE002513) hypothetical protein [Neisseria meningitidis MC58]; COG1262 Uncharacterized BCR; hypothetical protein 1230081..1230836 Neisseria gonorrhoeae FA 1090 3282088 YP_208347.1 CDS NGO1279 NC_002946.2 1232381 1232938 R Best Blastp Hit: pir||E81059 conserved hypothetical protein NMB1637 NMA1891 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|2253229|gb|AAC32673.1| (AF004820) hypthetical protein [Neisseria meningitidis] >gi|2253234|gb|AAC32677.1| (AF004821) hypothetical protein [Neisseria meningitidis] >gi|2253244|gb|AAC32685.1| (AF004823) hypothetical protein [Neisseria meningitidis] >gi|2253249|gb|AAC32689.1| (AF004824) hypothetical protein [Neisseria meningitidis] >gi|2253254|gb|AAC32693.1| (AF004825) hypothetical protein [Neisseria meningitidis] >gi|2253259|gb|AAC32697.1| (AF004826) hypothetical protein [Neisseria meningitidis] >gi|7226887|gb|AAF41986.1| (AE002514) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7380526|emb|CAB85113.1| (AL162757) conserved hypothetical protein [Neisseria meningitidis]; COG0778 Nitroreductases; hypothetical protein complement(1232381..1232938) Neisseria gonorrhoeae FA 1090 3282089 YP_208348.1 CDS NGO1282 NC_002946.2 1234709 1235023 R Best Blastp Hit: pir||G81059 hypothetical protein NMB1639 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226889|gb|AAF41988.1| (AE002514) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1234709..1235023) Neisseria gonorrhoeae FA 1090 3282087 YP_208349.1 CDS NGO1283 NC_002946.2 1235044 1236150 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase complement(1235044..1236150) Neisseria gonorrhoeae FA 1090 3282008 YP_208350.1 CDS NGO1284 NC_002946.2 1236499 1236948 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1236499..1236948 Neisseria gonorrhoeae FA 1090 3282099 YP_208351.2 CDS nusA NC_002946.2 1236976 1238478 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1236976..1238478 Neisseria gonorrhoeae FA 1090 3282105 YP_208352.1 CDS infB NC_002946.2 1238490 1241321 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1238490..1241321 Neisseria gonorrhoeae FA 1090 3282010 YP_208353.1 CDS NGO1287 NC_002946.2 1241481 1242821 R Best Blastp Hit: pir||C81058 hypothetical protein NMB1644 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226895|gb|AAF41993.1| (AE002515) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1241481..1242821) Neisseria gonorrhoeae FA 1090 3282080 YP_208354.1 CDS NGO1288 NC_002946.2 1242895 1244235 R Best Blastp Hit: pir||D81058 hypothetical protein NMB1645 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226896|gb|AAF41994.1| (AE002515) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1242895..1244235) Neisseria gonorrhoeae FA 1090 3282082 YP_208355.1 CDS NGO1289 NC_002946.2 1244378 1245004 D Best Blastp Hit: pir||D81817 probable hemeolysin NMA1900 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380534|emb|CAB85121.1| (AL162757) haemolysin [Neisseria meningitidis]; COG1272 Predicted membrane proteins, hemolysin; hypothetical protein 1244378..1245004 Neisseria gonorrhoeae FA 1090 3282093 YP_208356.1 CDS NGO1290 NC_002946.2 1245069 1246487 R Best Blastp Hit: pir||F81058 amino acid symporter, probable NMB1647 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226898|gb|AAF41996.1| (AE002515) amino acid symporter, [Neisseria meningitidis MC58]; COG1115 Sodium-alanine symporters; amino-acid transporter sodium/alanine symporter complement(1245069..1246487) Neisseria gonorrhoeae FA 1090 3282100 YP_208357.1 CDS NGO1291 NC_002946.2 1246814 1247542 D Best Blastp Hit: pir||F81817 conserved hypothetical protein NMA1902 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380536|emb|CAB85123.1| (AL162757) conserved hypothetical protein [Neisseria meningitidis]; COG0217 Uncharacterized ACR, YebC family; hypothetical protein 1246814..1247542 Neisseria gonorrhoeae FA 1090 3282078 YP_208358.1 CDS NGO1292 NC_002946.2 1247601 1248089 R Best Blastp Hit: gb|AAF41998.1| (AE002515) disulfide bond formation protein B [Neisseria meningitidis MC58]; COG1495 Disulfide bond formation protein DsbB; disulfide bond formation protein complement(1247601..1248089) Neisseria gonorrhoeae FA 1090 3282107 YP_208359.1 CDS NGO1293 NC_002946.2 1248518 1248802 R hypothetical protein complement(1248518..1248802) Neisseria gonorrhoeae FA 1090 3282019 YP_208360.1 CDS NGO1294 NC_002946.2 1249111 1249575 R Best Blastp Hit: pir||A81059 leucine-responsive regulatory protein NMB1650 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226901|gb|AAF41999.1| (AE002515) leucine-responsive regulatory protein [Neisseria meningitidis MC58]; COG1522 Transcriptional regulators, Lrp family; AsnC family transcriptional regulator complement(1249111..1249575) Neisseria gonorrhoeae FA 1090 3282118 YP_208361.1 CDS NGO1295 NC_002946.2 1249797 1250855 D Best Blastp Hit: pir||B81818 alanine racemase (EC 5.1.1.1) NMA1906 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380540|emb|CAB85127.1| (AL162757) alanine racemase [Neisseria meningitidis]; COG0787 Alanine racemase; hypothetical protein 1249797..1250855 Neisseria gonorrhoeae FA 1090 3281857 YP_208362.1 CDS NGO1296 NC_002946.2 1251143 1251325 R hypothetical protein complement(1251143..1251325) Neisseria gonorrhoeae FA 1090 3281997 YP_208363.1 CDS NGO1297 NC_002946.2 1251397 1252752 R Best Blastp Hit: pir||E81818 conserved hypothetical protein NMA1908 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380543|emb|CAB85130.1| (AL162757) conserved hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(1251397..1252752) Neisseria gonorrhoeae FA 1090 3282113 YP_208364.1 CDS NGO1298 NC_002946.2 1252767 1253039 R ACT domain-containing protein; hypothetical protein complement(1252767..1253039) Neisseria gonorrhoeae FA 1090 3282120 YP_208365.1 CDS NGO1299 NC_002946.2 1253164 1253901 R Best Blastp Hit: pir||E81057 conserved hypothetical protein NMB1654 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226906|gb|AAF42003.1| (AE002516) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1253164..1253901) Neisseria gonorrhoeae FA 1090 3281919 YP_208366.1 CDS NGO1300 NC_002946.2 1254039 1254950 R involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(1254039..1254950) Neisseria gonorrhoeae FA 1090 3281814 YP_208367.1 CDS NGO1301 NC_002946.2 1255045 1255755 D Best Blastp Hit: pir||A81819 hypothetical protein NMA1913 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380547|emb|CAB85134.1| (AL162757) hypothetical protein [Neisseria meningitidis]; hypothetical protein 1255045..1255755 Neisseria gonorrhoeae FA 1090 3281813 YP_208368.1 CDS NGO1302 NC_002946.2 1255895 1256548 D Best Blastp Hit: pir||G81087 IS1016C2 transposase NMB1411 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226649|gb|AAF41773.1| (AE002489) IS1016C2 transposase [Neisseria meningitidis MC58]; IS1016 transposase 1255895..1256548 Neisseria gonorrhoeae FA 1090 3281897 YP_208369.1 CDS NGO1304 NC_002946.2 1257496 1257789 R COG1555 DNA uptake protein ComEA and related; DNA-binding competence protein 2; ComE2 complement(1257496..1257789) Neisseria gonorrhoeae FA 1090 3282102 YP_208370.1 CDS NGO1306 NC_002946.2 1263560 1263847 R Best Blastp Hit: possibly phase variable - 8G residue homopolymer repeat in the coding sequence (ON); hypothetical protein complement(1263560..1263847) Neisseria gonorrhoeae FA 1090 3281872 YP_208371.1 CDS NGO1307 NC_002946.2 1263920 1265104 D Best Blastp Hit: pir||D81819 hypothetical protein NMA1916 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380550|emb|CAB85137.1| (AL162757) hypothetical protein [Neisseria meningitidis]; COG0452 Flavoprotein involved in panthothenate; flavoprotein 1263920..1265104 Neisseria gonorrhoeae FA 1090 3281866 YP_208372.1 CDS NGO1308 NC_002946.2 1265171 1267327 R Best Blastp Hit: pir||B81058 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase NMB1659 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226911|gb|AAF42008.1| (AE002516) guanosine-3`,5`-bis(diphosphate) 3`-pyrophosphohydrolase [Neisseria meningitidis MC58]; COG0317 Guanosine polyphosphate; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase complement(1265171..1267327) Neisseria gonorrhoeae FA 1090 3281878 YP_208373.1 CDS NGO1309 NC_002946.2 1267420 1267626 R Best Blastp Hit: gb|AAF42009.1| (AE002517) DNA-directed RNA polymerase, omega subunit [Neisseria meningitidis MC58] >gi|7380552|emb|CAB85139.1| (AL162757) DNA-directed RNA polymerase omega chain [Neisseria meningitidis]; COG1758 RNA polymerase-associated protein RpoZ; hypothetical protein complement(1267420..1267626) Neisseria gonorrhoeae FA 1090 3281864 YP_208374.1 CDS gmk NC_002946.2 1267684 1268301 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(1267684..1268301) Neisseria gonorrhoeae FA 1090 3281823 YP_208375.1 CDS NGO1311 NC_002946.2 1268429 1269028 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1268429..1269028 Neisseria gonorrhoeae FA 1090 3281884 YP_208376.1 CDS NGO1312 NC_002946.2 1269074 1269883 R Best Blastp Hit: emb|CAB85142.1| (AL162757) conserved hypothetical protein [Neisseria meningitidis]; COG0561 Predicted hydrolases of the HAD superfamily; hypothetical protein complement(1269074..1269883) Neisseria gonorrhoeae FA 1090 3281860 YP_208377.1 CDS NGO1313 NC_002946.2 1269916 1270026 D Best Blastp Hit: emb|CAB85143.1| (AL162757) hypothetical protein [Neisseria meningitidis]; hypothetical protein 1269916..1270026 Neisseria gonorrhoeae FA 1090 3281820 YP_208378.1 CDS NGO1314 NC_002946.2 1270187 1271542 D Best Blastp Hit: pir||B81056 proteinase, probable NMB1664 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226917|gb|AAF42013.1| (AE002517) protease, [Neisseria meningitidis MC58]; COG0826 Protease related to collagenase; protease 1270187..1271542 Neisseria gonorrhoeae FA 1090 3281920 YP_208379.1 CDS NGO1315 NC_002946.2 1271673 1272146 D Best Blastp Hit: pir||D81820 hypothetical protein NMA1924 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380558|emb|CAB85145.1| (AL162757) hypothetical protein [Neisseria meningitidis]; hypothetical protein 1271673..1272146 Neisseria gonorrhoeae FA 1090 3281855 YP_208380.1 CDS NGO1317 NC_002946.2 1274941 1275594 D Best Blastp Hit: pir||G81087 IS1016C2 transposase NMB1411 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226649|gb|AAF41773.1| (AE002489) IS1016C2 transposase [Neisseria meningitidis MC58]; IS1016 transposase 1274941..1275594 Neisseria gonorrhoeae FA 1090 3281895 YP_208381.1 CDS NGO1318 NC_002946.2 1275619 1276311 R Best Blastp Hit: pir||E81820 heme utilisation protein NMA1927 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|6692578|gb|AAF24745.1|AF133695_1 (AF133695) HemO [Neisseria meningitidis] >gi|7380559|emb|CAB85147.1| (AL162757) haem utilisation protein [Neisseria meningitidis]; hypothetical protein complement(1275619..1276311) Neisseria gonorrhoeae FA 1090 3281918 YP_208382.1 CDS NGO1319 NC_002946.2 1276589 1277893 D Best Blastp Hit: pir||F81820 hypothetical integral membrane protein NMA1928 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380560|emb|CAB85148.1| (AL162757) hypothetical integral membrane protein [Neisseria meningitidis]; protein PqiA; paraquot-inducible protein A 1276589..1277893 Neisseria gonorrhoeae FA 1090 3281916 YP_208383.1 CDS NGO1320 NC_002946.2 1277886 1279547 D Best Blastp Hit: pir||A81057 hypothetical integral membrane protein pqiB NMA1929 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226924|gb|AAF42020.1| (AE002517) pqiB protein [Neisseria meningitidis MC58] >gi|7380561|emb|CAB85149.1| (AL162757) hypothetical integral membrane protein [Neisseria meningitidis]; protein PqiB; paraquat-inducible protein B 1277886..1279547 Neisseria gonorrhoeae FA 1090 3281932 YP_208384.1 CDS NGO1321 NC_002946.2 1279547 1280065 D Best Blastp Hit: pir||H81820 probable lipoprotein NMA1930 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380562|emb|CAB85150.1| (AL162757) lipoprotein [Neisseria meningitidis]; hypothetical protein 1279547..1280065 Neisseria gonorrhoeae FA 1090 3281817 YP_208385.1 CDS NGO1322 NC_002946.2 1280069 1280620 D Best Blastp Hit: pir||A81821 DNA-3-methyladenine glycosidase I (EC 3.2.2.20) NMA1931 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380563|emb|CAB85151.1| (AL162757) DNA-3-methyladenine glycosylase I [Neisseria meningitidis]; DNA-3-methyladenineglycosylase I 1280069..1280620 Neisseria gonorrhoeae FA 1090 3281890 YP_208386.1 CDS NGO1323 NC_002946.2 1280610 1281251 D Best Blastp Hit: gb|AAF42023.1| (AE002517) GDSL lipase [Neisseria meningitidis MC58] >gi|7380564|emb|CAB85152.1| (AL162757) lipase [Neisseria meningitidis]; hypothetical protein 1280610..1281251 Neisseria gonorrhoeae FA 1090 3281844 YP_208387.1 CDS NGO1324 NC_002946.2 1281422 1281781 D Best Blastp Hit: pir||C81821 probable integral membrane protein NMA1933 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380565|emb|CAB85153.1| (AL162757) integral membrane protein [Neisseria meningitidis]; hypothetical protein 1281422..1281781 Neisseria gonorrhoeae FA 1090 3281883 YP_208388.1 CDS NGO1325 NC_002946.2 1281812 1284664 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 1281812..1284664 Neisseria gonorrhoeae FA 1090 3281818 YP_208389.1 CDS NGO1327 NC_002946.2 1285805 1285942 D Best Blastp Hit: emb|CAB85155.1| (AL162757) hypothetical protein [Neisseria meningitidis]; hypothetical protein 1285805..1285942 Neisseria gonorrhoeae FA 1090 3281931 YP_208390.1 CDS NGO1328 NC_002946.2 1286026 1286865 R Best Blastp Hit: gb|AAF42025.1| (AE002518) cytochrome c5 [Neisseria meningitidis MC58]; cytochrome complement(1286026..1286865) Neisseria gonorrhoeae FA 1090 3281927 YP_208391.1 CDS NGO1329 NC_002946.2 1287290 1288483 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(1287290..1288483) Neisseria gonorrhoeae FA 1090 3282024 YP_208392.1 CDS NGO1330 NC_002946.2 1288503 1289591 R catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase complement(1288503..1289591) Neisseria gonorrhoeae FA 1090 3282042 YP_208393.1 CDS NGO1331 NC_002946.2 1289738 1290838 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1289738..1290838 Neisseria gonorrhoeae FA 1090 3282016 YP_208394.1 CDS NGO1332 NC_002946.2 1290929 1291354 D Best Blastp Hit: pir||C81055 hypothetical protein NMB1681 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226934|gb|AAF42029.1| (AE002518) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1290929..1291354 Neisseria gonorrhoeae FA 1090 3282043 YP_208395.1 CDS NGO1333 NC_002946.2 1291428 1293413 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(1291428..1293413) Neisseria gonorrhoeae FA 1090 3282022 YP_208396.1 CDS NGO1334 NC_002946.2 1293480 1294088 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(1293480..1294088) Neisseria gonorrhoeae FA 1090 3282046 YP_208397.1 CDS NGO1335 NC_002946.2 1294170 1295465 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1294170..1295465 Neisseria gonorrhoeae FA 1090 3282013 YP_208398.1 CDS NGO1336 NC_002946.2 1295538 1296536 R Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynthes; D-lactate dehydrogenase complement(1295538..1296536) Neisseria gonorrhoeae FA 1090 3282039 YP_208399.1 CDS prfA NC_002946.2 1296661 1297737 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(1296661..1297737) Neisseria gonorrhoeae FA 1090 3282034 YP_208400.1 CDS NGO1338 NC_002946.2 1297827 1298597 R Best Blastp Hit: gb|AAF42035.1| (AE002519) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0084 Predicted hydrolases of PHP superfamily; hypothetical protein complement(1297827..1298597) Neisseria gonorrhoeae FA 1090 3281928 YP_208401.1 CDS NGO1339 NC_002946.2 1298600 1299592 R Best Blastp Hit: emb|CAB85167.1| (AL162757) L-asparaginase [Neisseria meningitidis]; COG0252 L-asparaginase; protein AnsA; L-asparaginase complement(1298600..1299592) Neisseria gonorrhoeae FA 1090 3281930 YP_208402.1 CDS NGO1340 NC_002946.2 1299659 1300342 R Best Blastp Hit: pir||B81823 DedA-family integral membrane protein NMA1948 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380580|emb|CAB85168.1| (AL162757) DedA-family integral membrane protein [Neisseria meningitidis]; COG0586 Uncharacterized membrane-associated; hypothetical protein complement(1299659..1300342) Neisseria gonorrhoeae FA 1090 3282064 YP_208403.1 CDS glmM NC_002946.2 1300531 1301868 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(1300531..1301868) Neisseria gonorrhoeae FA 1090 3282056 YP_208404.1 CDS NGO1342 NC_002946.2 1301995 1302849 R Best Blastp Hit: sp|Q51161|DHPS_NEIME dihydropteroate synthase (DHPS) (dihydropteroate pyrophosphorylase) >GI|95427|pir||S25614 dihydropteroate synthase (EC 2.5.1.15) - Neisseria meningitidis (strain 952/68) >gi|2120887|pir||S65839 dihydropteroate synthase (EC 2.5.1.15) - Neisseria meningitidis (strain 952/68) >gi|45036|emb|CAA48206.1| (X68069) dihydropteroate synthase [Neisseria meningitidis]; COG0294 Dihydropteroate synthase; dihydropteroate synthase complement(1301995..1302849) Neisseria gonorrhoeae FA 1090 3282050 YP_208405.1 CDS NGO1343 NC_002946.2 1302989 1303882 R Best Blastp Hit: gb|AAF42040.1| (AE002519) chorismate mutase-related protein [Neisseria meningitidis MC58]; COG0722 DAHP synthase/3-Deoxy-D-manno-octulosonic; hypothetical protein complement(1302989..1303882) Neisseria gonorrhoeae FA 1090 3282054 YP_208406.1 CDS NGO1344 NC_002946.2 1303973 1306075 D Best Blastp Hit: pir||G81051 hypothetical protein NMB1693 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226948|gb|AAF42041.1| (AE002520) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1303973..1306075 Neisseria gonorrhoeae FA 1090 3282014 YP_208407.1 CDS NGO1345 NC_002946.2 1306139 1307617 R Best Blastp Hit: pir||H81051 conserved hypothetical protein NMB1694 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226949|gb|AAF42042.1| (AE002520) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0043 Uncharacterized ACR, YigC family; hypothetical protein complement(1306139..1307617) Neisseria gonorrhoeae FA 1090 3282543 YP_208408.1 CDS NGO1346 NC_002946.2 1307637 1308152 R Best Blastp Hit: pir||G81823 hypothetical protein NMA1953 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380585|emb|CAB85173.1| (AL162757) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(1307637..1308152) Neisseria gonorrhoeae FA 1090 3282513 YP_208409.1 CDS NGO1347 NC_002946.2 1308159 1308500 R Best Blastp Hit: pir||H81823 probable integral membrane protein NMA1954 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380586|emb|CAB85174.1| (AL162757) integral membrane protein [Neisseria meningitidis]; hypothetical protein complement(1308159..1308500) Neisseria gonorrhoeae FA 1090 3282271 YP_208410.1 CDS NGO1348 NC_002946.2 1308544 1308711 R Best Blastp Hit: pir||B81171 hypothetical protein NMB0676 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225903|gb|AAF41094.1| (AE002422) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1308544..1308711) Neisseria gonorrhoeae FA 1090 3281112 YP_208411.1 CDS NGO1349 NC_002946.2 1308789 1309538 R Best Blastp Hit: emb|CAB85175.1| (AL162757) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(1308789..1309538) Neisseria gonorrhoeae FA 1090 3282006 YP_208412.1 CDS NGO1350 NC_002946.2 1309781 1310347 D Best Blastp Hit: pir||G81052 hypothetical protein NMB1701 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226956|gb|AAF42049.1| (AE002520) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1309781..1310347 Neisseria gonorrhoeae FA 1090 3282055 YP_208413.1 CDS NGO1352 NC_002946.2 1311101 1312243 D Best Blastp Hit: pir||A81053 3-oxoacyl-(acyl-carrier-protein) synthase II NMB1703 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226958|gb|AAF42051.1| (AE002520) 3-oxoacyl-(acyl-carrier-protein) synthase II [Neisseria meningitidis MC58]; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I; 3-oxoacyl-ACP synthase 1311101..1312243 Neisseria gonorrhoeae FA 1090 3281082 YP_208414.1 CDS NGO1353 NC_002946.2 1312530 1313294 D Best Blastp Hit: emb|CAB85178.1| (AL162757) beta-1,4-glucosyltransferase [Neisseria meningitidis]; COG0463 Glycosyltransferases involved in cell; hypothetical protein 1312530..1313294 Neisseria gonorrhoeae FA 1090 3282492 YP_208415.1 CDS NGO1354 NC_002946.2 1313295 1314359 D Best Blastp Hit: gb|AAF42053.1| (AE002520) alpha-1,2-N-acetylglucosamine transferase [Neisseria meningitidis MC58]; COG0438 Glycosyltransferases I; RfaK 1313295..1314359 Neisseria gonorrhoeae FA 1090 3282072 YP_208416.1 CDS NGO1355 NC_002946.2 1314593 1315930 D Best Blastp Hit: pir||F81050 sodium- and chloride-dependent transporter NMB1707 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226963|gb|AAF42055.1| (AE002521) sodium- and chloride-dependent transporter [Neisseria meningitidis MC58]; COG0733 Sodium-dependent transporters (SNF family); sodium dependent ion transport protein 1314593..1315930 Neisseria gonorrhoeae FA 1090 3282052 YP_208417.1 CDS thyA NC_002946.2 1317126 1317920 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(1317126..1317920) Neisseria gonorrhoeae FA 1090 3282062 YP_208418.1 CDS NGO1358 NC_002946.2 1318344 1319678 D converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1318344..1319678 Neisseria gonorrhoeae FA 1090 3282370 YP_208419.1 CDS NGO1359 NC_002946.2 1319675 1319929 R Best Blastp Hit: gb|AAF41523.1| (AE002462) hypothetical protein [Neisseria meningitidis MC58] >gi|7226410|gb|AAF41558.1| (AE002465) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1319675..1319929) Neisseria gonorrhoeae FA 1090 3282522 YP_208420.1 CDS NGO1360 NC_002946.2 1319917 1320696 R Best Blastp Hit: emb|CAB85185.1| (AL162757) GntR-family transcriptional regulator [Neisseria meningitidis]; COG2186 Transcriptional regulators, FadR family; GntR family transcriptional regulator complement(1319917..1320696) Neisseria gonorrhoeae FA 1090 3282241 YP_208421.1 CDS NGO1361 NC_002946.2 1320974 1321261 D Best Blastp Hit: gb|AAF42059.1| (AE002521) L-lactate permease-related protein [Neisseria meningitidis MC58]; COG1620 L-lactate permease; hypothetical protein 1320974..1321261 Neisseria gonorrhoeae FA 1090 3282487 YP_208422.1 CDS NGO1362 NC_002946.2 1321289 1321438 D Best Blastp Hit: emb|CAB85187.1| (AL162757) hypothetical protein [Neisseria meningitidis]; hypothetical protein 1321289..1321438 Neisseria gonorrhoeae FA 1090 3282437 YP_208423.1 CDS NGO1363 NC_002946.2 1321639 1323042 R Best Blastp Hit: gb|AAF42061.1| (AE002521) multidrug efflux pump channel protein [Neisseria meningitidis MC58]; hypothetical protein complement(1321639..1323042) Neisseria gonorrhoeae FA 1090 3282457 YP_208424.1 CDS NGO1364 NC_002946.2 1323095 1326298 R Best Blastp Hit: gb|AAC45560.1| (U60099) RND protein [Neisseria gonorrhoeae]; COG0841 Cation efflux system protein; antibiotic resistance efflux pump component complement(1323095..1326298) Neisseria gonorrhoeae FA 1090 3282529 YP_208425.1 CDS NGO1365 NC_002946.2 1326310 1327548 R Best Blastp Hit: sp|P43505|MTRC_NEIGO membrane fusion protein MtrC precursor >gi|550460|gb|AAA80193.1| (U14993) membrane fusion protein [Neisseria gonorrhoeae]; COG0845 Membrane permeases, predicted cation efflux; antibiotic resistance efflux pump component complement(1326310..1327548) Neisseria gonorrhoeae FA 1090 3282559 YP_208426.1 CDS NGO1366 NC_002946.2 1327798 1328430 D Best Blastp Hit: sp|P39897|MTRR_NEIGO regulatory protein MtrR >gi|541020|pir||S40250 MtrR protein - Neisseria gonorrhoeae >gi|7449616|pir||S42419 probable transcription repressor mtrR - Neisseria gonorrhoeae (strain FA19) >gi|438189|emb|CAA81047.1| (Z25797) MtrR protein [Neisseria gonorrhoeae]; COG1309 Transcriptional regulators, AcrR family; mtrCDE transcriptional repressor 1327798..1328430 Neisseria gonorrhoeae FA 1090 3281546 YP_208427.1 CDS NGO1367 NC_002946.2 1328523 1328780 R Best Blastp Hit: emb|CAB85192.1| (AL162757) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(1328523..1328780) Neisseria gonorrhoeae FA 1090 3281677 YP_208428.1 CDS NGO1368 NC_002946.2 1329067 1330635 D Best Blastp Hit: gb|AAD51362.2|AF176820_1 (AF176820) efflux pump component MtrF [Neisseria gonorrhoeae]; antibiotic resistance efflux pump component 1329067..1330635 Neisseria gonorrhoeae FA 1090 3281186 YP_208429.1 CDS NGO1369 NC_002946.2 1330703 1333909 R Best Blastp Hit: pir||D81826 exodeoxyribonuclease V (EC 3.1.11.5) NMA1974 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380606|emb|CAB85194.1| (AL162757) exodeoxyribonuclease V [Neisseria meningitidis]; COG1330 Exonuclease V gamma subunit, RecC; exodeoxyribonuclease V complement(1330703..1333909) Neisseria gonorrhoeae FA 1090 3282239 YP_208430.1 CDS NGO1370 NC_002946.2 1334010 1335419 R Best Blastp Hit: pir||E81826 probable integral membrane protein NMA1975 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380607|emb|CAB85195.1| (AL162757) integral membrane protein [Neisseria meningitidis]; hypothetical protein complement(1334010..1335419) Neisseria gonorrhoeae FA 1090 3281374 YP_208431.1 CDS NGO1371 NC_002946.2 1335763 1337082 R Best Blastp Hit: gb|AAF42068.1| (AE002522) cytochrome c oxidase, subunit III [Neisseria meningitidis MC58]; COG2010 Cytochrome c, mono- and diheme variants; protein CcoP; cytochrome c oxidase subunit complement(1335763..1337082) Neisseria gonorrhoeae FA 1090 3282544 YP_208432.1 CDS NGO1372 NC_002946.2 1337106 1337276 R Best Blastp Hit: emb|CAB85198.1| (AL162757) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(1337106..1337276) Neisseria gonorrhoeae FA 1090 3282495 YP_208433.1 CDS NGO1373 NC_002946.2 1337281 1337892 R CcoO; FixO; cbb3-type cytochrome c oxidase subunit II complement(1337281..1337892) Neisseria gonorrhoeae FA 1090 3282491 YP_208434.1 CDS NGO1374 NC_002946.2 1337919 1339364 R CcoN; FixN; cbb3-type cytochrome c oxidase subunit I complement(1337919..1339364) Neisseria gonorrhoeae FA 1090 3281484 YP_208435.1 CDS NGO1375 NC_002946.2 1339678 1341426 D Best Blastp Hit: pir||E81048 conserved hypothetical protein NMB1726 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226981|gb|AAF42071.1| (AE002523) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0265 Trypsin-like serine proteases, typically; hypothetical protein 1339678..1341426 Neisseria gonorrhoeae FA 1090 3281495 YP_208436.1 CDS NGO1376 NC_002946.2 1341452 1341919 D Best Blastp Hit: pir||C81827 hypothetical protein NMA1982 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380613|emb|CAB85202.1| (AL162757) hypothetical protein [Neisseria meningitidis]; hypothetical protein 1341452..1341919 Neisseria gonorrhoeae FA 1090 3281771 YP_208437.1 CDS NGO1377 NC_002946.2 1342420 1342854 R Best Blastp Hit: sp|O06434|EXBD_NEIGO biopolymer transport ExbD protein >gi|2098623|gb|AAC45288.1| (U79563) ExbD [Neisseria gonorrhoeae]; COG0848 biopolymer transport protein ExbD; hypothetical protein complement(1342420..1342854) Neisseria gonorrhoeae FA 1090 3281762 YP_208438.1 CDS NGO1378 NC_002946.2 1342857 1343567 R Best Blastp Hit: sp|O06433|EXBB_NEIGO biopolymer transport ExbB protein >gi|2098622|gb|AAC45287.1| (U79563) ExbB [Neisseria gonorrhoeae]; COG0811 biopolymer transport proteins; ExbB oriteub complement(1342857..1343567) Neisseria gonorrhoeae FA 1090 3281357 YP_208439.1 CDS NGO1379 NC_002946.2 1343585 1344436 R Best Blastp Hit: sp|O06432|TONB_NEIGO TonB protein >gi|2098621|gb|AAC45286.1| (U79563) TonB [Neisseria gonorrhoeae]; TonB complement(1343585..1344436) Neisseria gonorrhoeae FA 1090 3281642 YP_208440.1 CDS NGO1380 NC_002946.2 1344692 1345330 D Best Blastp Hit: pir||B81049 conserved hypothetical protein NMB1731 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226986|gb|AAF42076.1| (AE002523) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1994 Zn-dependent proteases; hypothetical protein 1344692..1345330 Neisseria gonorrhoeae FA 1090 3281799 YP_208441.1 CDS NGO1381 NC_002946.2 1345402 1346043 R cofactor involved in the reduction of disulfides; glutaredoxin complement(1345402..1346043) Neisseria gonorrhoeae FA 1090 3281769 YP_208442.1 CDS NGO1382 NC_002946.2 1346186 1348399 D Best Blastp Hit: pir||F81049 GTP pyrophosphokinase NMB1735 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226990|gb|AAF42080.1| (AE002523) GTP pyrophosphokinase [Neisseria meningitidis MC58]; COG0317 Guanosine; GTP pyrophosphokinase 1346186..1348399 Neisseria gonorrhoeae FA 1090 3281790 YP_208443.1 CDS NGO1383 NC_002946.2 1348463 1348840 R Best Blastp Hit: pir||E81783 hypothetical protein NMA2118 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380741|emb|CAB85332.1| (AL162758) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(1348463..1348840) Neisseria gonorrhoeae FA 1090 3281773 YP_208444.1 CDS NGO1384 NC_002946.2 1348909 1349394 R Best Blastp Hit: pir||D81783 hypothetical protein NMA2117 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380740|emb|CAB85331.1| (AL162758) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(1348909..1349394) Neisseria gonorrhoeae FA 1090 3281386 YP_208445.1 CDS NGO1385 NC_002946.2 1349345 1349974 R Best Blastp Hit: possibly an alternative C terminus for MafB; hypothetical protein complement(1349345..1349974) Neisseria gonorrhoeae FA 1090 3281317 YP_208446.1 CDS NGO1386 NC_002946.2 1350801 1351505 R Best Blastp Hit: possibly an alternative C terminus for MafB; hypothetical protein complement(1350801..1351505) Neisseria gonorrhoeae FA 1090 3281277 YP_208447.1 CDS NGO1387 NC_002946.2 1351641 1352183 R Best Blastp Hit: sp|P45941|YQCF_BACSU hypothetical 21.5 KD protein in CWLA-CISA intergenic region >gi|7475297|pir||E69949 hypothetical protein yqcF - Bacillus subtilis >gi|1217878|dbj|BAA06963.1| (D32216) ORF95 [Bacillus subtilis] >gi|1303771|dbj|BAA12427.1| (D84432) YqcF [Bacillus subtilis] >gi|2635032|emb|CAB14528.1| (Z99117) yqcF [Bacillus subtilis]; hypothetical protein complement(1351641..1352183) Neisseria gonorrhoeae FA 1090 3281204 YP_208448.1 CDS NGO1388 NC_002946.2 1352310 1352537 R Best Blastp Hit: pir||S24525 Ig heavy chain V region - mouse >gi|51255|emb|CAA47230.1| (X66668) immunoglobulin heavy chain [Mus musculus]; hypothetical protein complement(1352310..1352537) Neisseria gonorrhoeae FA 1090 3281756 YP_208449.1 CDS NGO1389 NC_002946.2 1352596 1352919 R hypothetical protein complement(1352596..1352919) Neisseria gonorrhoeae FA 1090 3281152 YP_208450.1 CDS NGO1390 NC_002946.2 1352909 1353262 R hypothetical protein complement(1352909..1353262) Neisseria gonorrhoeae FA 1090 3281310 YP_208451.1 CDS NGO1391 NC_002946.2 1353559 1354107 R Best Blastp Hit: emb|CAC01359.1| (AL390975) hypothetical protein SCP8.21 [Streptomyces coelicolor A3(2)]; hypothetical protein complement(1353559..1354107) Neisseria gonorrhoeae FA 1090 3281298 YP_208452.1 CDS NGO1392 NC_002946.2 1354097 1355914 R Best Blastp Hit: pir||H81782 adhesin MafB2 NMA2113 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380736|emb|CAB85327.1| (AL162758) adhesin MafB2 [Neisseria meningitidis]; protein MafB3; MafB-like protein complement(1354097..1355914) Neisseria gonorrhoeae FA 1090 3281322 YP_208453.1 CDS NGO1393 NC_002946.2 1355918 1356859 R Best Blastp Hit: pir||G81782 adhesin MafA2 NMA2112 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380735|emb|CAB85326.1| (AL162758) adhesin MafA2 [Neisseria meningitidis]; MafA-like protein complement(1355918..1356859) Neisseria gonorrhoeae FA 1090 3281326 YP_208454.1 CDS NGO1394 NC_002946.2 1356999 1357652 R Best Blastp Hit: pir||G81087 IS1016C2 transposase NMB1411 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226649|gb|AAF41773.1| (AE002489) IS1016C2 transposase [Neisseria meningitidis MC58]; IS1016 transposase complement(1356999..1357652) Neisseria gonorrhoeae FA 1090 3281287 YP_208455.1 CDS NGO1395 NC_002946.2 1357719 1358300 D Best Blastp Hit: emb|CAB84330.1| (AL162755) periplasmic protein [Neisseria meningitidis]; COG1101 ATPase components of various transport; hypothetical protein 1357719..1358300 Neisseria gonorrhoeae FA 1090 3281256 YP_208456.1 CDS NGO1396 NC_002946.2 1358282 1360090 D Best Blastp Hit: emb|CAB84049.1| (AL162754) electron transfer flavoprotein-ubiquinone oxidoreductase [Neisseria meningitidis]; COG0644 Dehydrogenases (flavoproteins); electron transfer flavoprotein-ubiquinone oxidoreductase 1358282..1360090 Neisseria gonorrhoeae FA 1090 3281269 YP_208457.1 CDS NGO1397 NC_002946.2 1360224 1360718 R Best Blastp Hit: pir||G81183 protein disulfide isomerase NosL, probable NMB0580 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225808|gb|AAF41008.1| (AE002413) protein disulfide isomerase NosL, [Neisseria meningitidis MC58] >gi|7379486|emb|CAB84048.1| (AL162754) lipoprotein [Neisseria meningitidis]; protein NosL; dissimilatory nitrous oxide reduction protein, lipoprotein complement(1360224..1360718) Neisseria gonorrhoeae FA 1090 3281172 YP_208458.1 CDS NGO1398 NC_002946.2 1360715 1361545 R Best Blastp Hit: pir||T44663 nosY protein [imported] - Bradyrhizobium japonicum >gi|3850617|emb|CAA05522.1| (AJ002531) nosY [Bradyrhizobium japonicum]; COG1277 Predicted membrane protein; hypothetical protein complement(1360715..1361545) Neisseria gonorrhoeae FA 1090 3281237 YP_208459.1 CDS NGO1399 NC_002946.2 1361542 1362468 R Best Blastp Hit: pir||D81920 probable ABC-transporter ATP-binding protein NMA0763 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379484|emb|CAB84046.1| (AL162754) ABC-transporter ATP-binding protein [Neisseria meningitidis]; COG1131 ABC-type multidrug transport system, ATPase; ABC transporter ATP-binding protein complement(1361542..1362468) Neisseria gonorrhoeae FA 1090 3281242 YP_208460.1 CDS hemA NC_002946.2 1368673 1369920 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(1368673..1369920) Neisseria gonorrhoeae FA 1090 3281230 YP_208461.1 CDS NGO1404 NC_002946.2 1370073 1370459 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(1370073..1370459) Neisseria gonorrhoeae FA 1090 3281213 YP_208462.1 CDS NGO1405 NC_002946.2 1370511 1371050 R hypothetical protein complement(1370511..1371050) Neisseria gonorrhoeae FA 1090 3281184 YP_208463.1 CDS gcvT NC_002946.2 1371197 1372297 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(1371197..1372297) Neisseria gonorrhoeae FA 1090 3281180 YP_208464.1 CDS NGO1407 NC_002946.2 1372809 1373291 D Best Blastp Hit: gb|AAF41001.1| (AE002413) transcriptional regulator, AsnC family [Neisseria meningitidis MC58]; COG1522 Transcriptional regulators, Lrp family; AsnC family transcriptional regulator 1372809..1373291 Neisseria gonorrhoeae FA 1090 3281156 YP_208465.1 CDS NGO1408 NC_002946.2 1373338 1373943 D Best Blastp Hit: pir||D81919 hypothetical protein NMA0755 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379476|emb|CAB84038.1| (AL162754) hypothetical protein NMA0755 [Neisseria meningitidis]; hypothetical protein 1373338..1373943 Neisseria gonorrhoeae FA 1090 3281285 YP_208466.1 CDS NGO1410 NC_002946.2 1373940 1374299 D Best Blastp Hit: pir||C81919 probable membrane protein NMA0754 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379475|emb|CAB84037.1| (AL162754) membrane protein [Neisseria meningitidis]; hypothetical protein 1373940..1374299 Neisseria gonorrhoeae FA 1090 3281161 YP_208467.1 CDS NGO1411 NC_002946.2 1374586 1376079 D Best Blastp Hit: gb|AAF40998.1| (AE002413) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1374586..1376079 Neisseria gonorrhoeae FA 1090 3281157 YP_208468.1 CDS NGO1412 NC_002946.2 1376153 1376806 R Best Blastp Hit: pir||G81087 IS1016C2 transposase NMB1411 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226649|gb|AAF41773.1| (AE002489) IS1016C2 transposase [Neisseria meningitidis MC58]; IS1016 transposase complement(1376153..1376806) Neisseria gonorrhoeae FA 1090 3281165 YP_208469.1 CDS NGO1413 NC_002946.2 1377044 1378387 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 1377044..1378387 Neisseria gonorrhoeae FA 1090 3281162 YP_208470.1 CDS NGO1414 NC_002946.2 1378390 1379622 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 1378390..1379622 Neisseria gonorrhoeae FA 1090 3281781 YP_208471.1 CDS NGO1415 NC_002946.2 1379615 1380391 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 1379615..1380391 Neisseria gonorrhoeae FA 1090 3281782 YP_208472.1 CDS NGO1416 NC_002946.2 1380391 1381017 D Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 1380391..1381017 Neisseria gonorrhoeae FA 1090 3281797 YP_208473.1 CDS NGO1417 NC_002946.2 1381021 1381614 D Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 1381021..1381614 Neisseria gonorrhoeae FA 1090 3281763 YP_208474.1 CDS NGO1418 NC_002946.2 1381628 1382845 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 1381628..1382845 Neisseria gonorrhoeae FA 1090 3281779 YP_208475.1 CDS NGO1419 NC_002946.2 1383027 1383194 D hypothetical protein 1383027..1383194 Neisseria gonorrhoeae FA 1090 3281785 YP_208476.1 CDS NGO1420 NC_002946.2 1383362 1384417 D Best Blastp Hit: pir||F81184 thiamin biosynthesis lipoprotein ApbE NMB0563 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225790|gb|AAF40991.1| (AE002412) thiamine biosynthesis lipoprotein ApbE [Neisseria meningitidis MC58]; COG1477 Membrane-associated lipoprotein ApbE; hypothetical protein 1383362..1384417 Neisseria gonorrhoeae FA 1090 3281796 YP_208477.1 CDS NGO1421 NC_002946.2 1384443 1384658 D Best Blastp Hit: gb|AAF40990.1| (AE002412) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379466|emb|CAB84028.1| (AL162754) periplasmic protein [Neisseria meningitidis]; hypothetical protein 1384443..1384658 Neisseria gonorrhoeae FA 1090 3281766 YP_208478.1 CDS NGO1422 NC_002946.2 1384782 1385360 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(1384782..1385360) Neisseria gonorrhoeae FA 1090 3281765 YP_208479.1 CDS NGO1423 NC_002946.2 1385543 1386361 D Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); COG1045 Serine acetyltransferase; hypothetical protein 1385543..1386361 Neisseria gonorrhoeae FA 1090 3281764 YP_208480.1 CDS ubiB NC_002946.2 1386565 1388076 R an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; ubiquinone biosynthesis protein UbiB complement(1386565..1388076) Neisseria gonorrhoeae FA 1090 3281752 YP_208481.1 CDS NGO1426 NC_002946.2 1388728 1389066 R essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA complement(1388728..1389066) Neisseria gonorrhoeae FA 1090 3281776 YP_208482.1 CDS NGO1427 NC_002946.2 1389199 1389909 R Best Blastp Hit: gb|AAF40984.1| (AE002411) repressor protein, [Neisseria meningitidis MC58]; transcriptional regulator complement(1389199..1389909) Neisseria gonorrhoeae FA 1090 3281710 YP_208483.1 CDS NGO1428 NC_002946.2 1390072 1390344 D Best Blastp Hit: gb|AAF40983.1| (AE002411) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1390072..1390344 Neisseria gonorrhoeae FA 1090 3281745 YP_208484.1 CDS dnaK NC_002946.2 1390552 1392480 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1390552..1392480 Neisseria gonorrhoeae FA 1090 3281746 YP_208485.1 CDS NGO1430 NC_002946.2 1392703 1393950 D Best Blastp Hit: gb|AAA25906.1| (M60717) nosA [Pseudomonas stutzeri]; hypothetical protein 1392703..1393950 Neisseria gonorrhoeae FA 1090 3281730 YP_208486.1 CDS NGO1431 NC_002946.2 1393922 1394623 D Best Blastp Hit: dbj|BAA05664.1| (D28119) outer membrane protein C [Pseudomonas aeruginosa] >gi|9949962|gb|AAG07177.1|AE004797_12 (AE004797) outer membrane protein OprC [Pseudomonas aeruginosa]; hypothetical protein 1393922..1394623 Neisseria gonorrhoeae FA 1090 3281754 YP_208487.1 CDS NGO1432 NC_002946.2 1394680 1395657 D Best Blastp Hit: pir||D72405 hypothetical protein - Thermotoga maritima (strain MSB8) >gi|4980699|gb|AAD35294.1|AE001705_5 (AE001705) hypothetical protein [Thermotoga maritima]; COG0715 taurine-binding periplasmic; hypothetical protein 1394680..1395657 Neisseria gonorrhoeae FA 1090 3281737 YP_208488.1 CDS NGO1433 NC_002946.2 1396210 1396911 D Best Blastp Hit: gb|AAG07323.1|AE004811_6 (AE004811) probable permease of ABC taurine transporter [Pseudomonas aeruginosa]; COG0600 Uncharacterized permeases; ABC transporter permease 1396210..1396911 Neisseria gonorrhoeae FA 1090 3281714 YP_208489.1 CDS NGO1434 NC_002946.2 1397102 1397710 D Best Blastp Hit: gb|AAD31787.1|AF126201_5 (AF126201) AtsC [Pseudomonas putida]; COG1116 ABC-type nitrate transport system, ATPase; ABC transporter ATP-binding protein 1397102..1397710 Neisseria gonorrhoeae FA 1090 3281740 YP_208490.1 CDS NGO1435 NC_002946.2 1397890 1398516 D Best Blastp Hit: gb|AAB51227.1| (AF134905) CadD [Staphylococcus aureus]; protein CadB; cadmium resistance protein 1397890..1398516 Neisseria gonorrhoeae FA 1090 3281702 YP_208491.1 CDS NGO1437 NC_002946.2 1399954 1402143 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(1399954..1402143) Neisseria gonorrhoeae FA 1090 3281691 YP_208492.1 CDS NGO1438 NC_002946.2 1402283 1403068 D Best Blastp Hit: gb|AAF40979.1| (AE002411) thiol:disulfide interchange protein DsbC [Neisseria meningitidis MC58] >gi|7379452|emb|CAB84014.1| (AL162754) thiol:disulphide interchange protein [Neisseria meningitidis]; COG1651 protein-disulfide isomerases DsbC/DsbG; hypothetical protein 1402283..1403068 Neisseria gonorrhoeae FA 1090 3281709 YP_208493.1 CDS NGO1439 NC_002946.2 1403167 1405101 R Best Blastp Hit: pir||C81187 ABC transporter ATP-binding protein NMB0549 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225775|gb|AAF40978.1| (AE002410) ABC transporter ATP-binding protein [Neisseria meningitidis MC58]; COG0577 Predicted permease; ABC transporter ATP-binding protein complement(1403167..1405101) Neisseria gonorrhoeae FA 1090 3281707 YP_208494.1 CDS NGO1440 NC_002946.2 1405167 1406345 R Best Blastp Hit: emb|CAB84012.1| (AL162754) periplasmic protein [Neisseria meningitidis]; COG0845 Membrane permeases, predicted cation efflux; ABC transporter periplasmic protein complement(1405167..1406345) Neisseria gonorrhoeae FA 1090 3281712 YP_208495.1 CDS NGO1441 NC_002946.2 1406571 1406960 D Best Blastp Hit: emb|CAB84011.1| (AL162754) pilin [Neisseria meningitidis]; type IV pilin protein 1406571..1406960 Neisseria gonorrhoeae FA 1090 3281720 YP_208496.2 CDS NGO1442 NC_002946.2 1407240 1408280 D similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 1407240..1408280 Neisseria gonorrhoeae FA 1090 3281729 YP_208497.1 CDS NGO1443 NC_002946.2 1408581 1412066 R Best Blastp Hit: gb|AAF40974.1| (AE002410) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1196 Chromosome segregation ATPases; hypothetical protein complement(1408581..1412066) Neisseria gonorrhoeae FA 1090 3281743 YP_208498.1 CDS NGO1444 NC_002946.2 1412050 1412229 D hypothetical protein 1412050..1412229 Neisseria gonorrhoeae FA 1090 3281716 YP_208499.1 CDS NGO1445 NC_002946.2 1412494 1413162 D Best Blastp Hit: gb|AAG01335.1|AF288222_1 (AF288222) outer membrane protein XadA [Xanthomonas oryzae pv. oryzae]; hypothetical protein 1412494..1413162 Neisseria gonorrhoeae FA 1090 3281693 YP_208500.1 CDS NGO1446 NC_002946.2 1413134 1413619 D Best Blastp Hit: sp|P31489|YADA_YEREN invasin precursor (outer membrane adhesin) >gi|96987|pir||S04912 yopA protein - Yersinia enterocolitica plasmid pYV6471/76 >gi|48607|emb|CAA32086.1| (X13882) YadA [Yersinia enterocolitica]; hypothetical protein 1413134..1413619 Neisseria gonorrhoeae FA 1090 3281717 YP_208501.1 CDS NGO1447 NC_002946.2 1413742 1413864 D hypothetical protein 1413742..1413864 Neisseria gonorrhoeae FA 1090 3281696 YP_208502.1 CDS NGO1448 NC_002946.2 1413828 1414550 D catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 1413828..1414550 Neisseria gonorrhoeae FA 1090 3281706 YP_208503.1 CDS NGO1449 NC_002946.2 1414819 1416405 D Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); COG1620 L-lactate permease; LctP; L-lactate permease 1414819..1416405 Neisseria gonorrhoeae FA 1090 3281635 YP_208504.1 CDS NGO1450 NC_002946.2 1416571 1416774 R Best Blastp Hit: gb|AAF40971.1| (AE002410) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1416571..1416774) Neisseria gonorrhoeae FA 1090 3281700 YP_208505.1 CDS NGO1451 NC_002946.2 1416890 1417387 D Best Blastp Hit: pir||C81186 hypothetical protein NMB0541 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225767|gb|AAF40970.1| (AE002410) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1416890..1417387 Neisseria gonorrhoeae FA 1090 3281678 YP_208506.1 CDS NGO1452 NC_002946.2 1417469 1418659 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 1417469..1418659 Neisseria gonorrhoeae FA 1090 3281656 YP_208507.1 CDS lysS NC_002946.2 1419715 1421226 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(1419715..1421226) Neisseria gonorrhoeae FA 1090 3281692 YP_208508.1 CDS NGO1455 NC_002946.2 1421381 1422634 R Best Blastp Hit: gb|AAF41787.1| (AE002492) hypothetical protein [Neisseria meningitidis MC58] >gi|7380281|emb|CAB84867.1| (AL162756) integral membrane protein [Neisseria meningitidis]; hypothetical protein complement(1421381..1422634) Neisseria gonorrhoeae FA 1090 3281701 YP_208509.1 CDS NGO1456 NC_002946.2 1423093 1424889 D Best Blastp Hit: pir||D81858 probable aminopeptidase NMA1640 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380282|emb|CAB84868.1| (AL162756) aminopeptidase [Neisseria meningitidis]; COG0006 Xaa-Pro aminopeptidase; aminopeptidase 1423093..1424889 Neisseria gonorrhoeae FA 1090 3281686 YP_208510.1 CDS NGO1457 NC_002946.2 1425019 1425291 D Best Blastp Hit: gb|AAF41506.1| (AE002461) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1425019..1425291 Neisseria gonorrhoeae FA 1090 3281689 YP_208511.1 CDS NGO1458 NC_002946.2 1425288 1425692 D Best Blastp Hit: emb|CAB83729.1| (AL162753) DNA helicase [Neisseria meningitidis]; hypothetical protein 1425288..1425692 Neisseria gonorrhoeae FA 1090 3281681 YP_208512.1 CDS NGO1459 NC_002946.2 1425714 1425971 D Best Blastp Hit: pir||A81102 transcription-repair coupling factor NMB1281 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226520|gb|AAF41657.1| (AE002476) transcription-repair coupling factor [Neisseria meningitidis MC58]; hypothetical protein 1425714..1425971 Neisseria gonorrhoeae FA 1090 3281675 YP_208513.1 CDS NGO1460 NC_002946.2 1425993 1426172 D hypothetical protein 1425993..1426172 Neisseria gonorrhoeae FA 1090 3281704 YP_208514.1 CDS NGO1461 NC_002946.2 1426490 1427032 R Best Blastp Hit: gb|AAF41506.1| (AE002461) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1426490..1427032) Neisseria gonorrhoeae FA 1090 3281666 YP_208515.1 CDS NGO1462 NC_002946.2 1427071 1427433 D hypothetical protein 1427071..1427433 Neisseria gonorrhoeae FA 1090 3281679 YP_208516.1 CDS NGO1463 NC_002946.2 1427461 1427640 D hypothetical protein 1427461..1427640 Neisseria gonorrhoeae FA 1090 3281665 YP_208517.1 CDS NGO1465 NC_002946.2 1428738 1429151 R Best Blastp Hit: gb|AAD38303.1|AF036242_3 (AF036242) unknown [Neisseria meningitidis]; hypothetical protein complement(1428738..1429151) Neisseria gonorrhoeae FA 1090 3281644 YP_208518.1 CDS purH NC_002946.2 1429169 1430749 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(1429169..1430749) Neisseria gonorrhoeae FA 1090 3281673 YP_208519.1 CDS NGO1467 NC_002946.2 1430910 1432052 R Best Blastp Hit: gb|AAF41386.1| (AE002449) chloride channel protein-related protein [Neisseria meningitidis MC58]; COG0038 Permease, chloride channel; hypothetical protein complement(1430910..1432052) Neisseria gonorrhoeae FA 1090 3281659 YP_208520.1 CDS NGO1468 NC_002946.2 1432197 1433030 R Best Blastp Hit: gb|AAF41385.1| (AE002449) phosphoserine phosphatase [Neisseria meningitidis MC58]; COG0560 Phosphoserine phosphatase; hypothetical protein complement(1432197..1433030) Neisseria gonorrhoeae FA 1090 3281663 YP_208521.1 CDS NGO1469 NC_002946.2 1433076 1433204 D Best Blastp Hit: emb|CAB84440.1| (AL162755) hypothetical protein NMA1178 [Neisseria meningitidis]; hypothetical protein 1433076..1433204 Neisseria gonorrhoeae FA 1090 3281657 YP_208522.1 CDS pntA NC_002946.2 1433319 1434857 D forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 1433319..1434857 Neisseria gonorrhoeae FA 1090 3281654 YP_208523.1 CDS NGO1471 NC_002946.2 1434861 1435244 D Best Blastp Hit: pir||E81134 hypothetical protein NMB0979 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226219|gb|AAF41383.1| (AE002449) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1434861..1435244 Neisseria gonorrhoeae FA 1090 3281645 YP_208524.1 CDS pntB NC_002946.2 1435324 1436709 D catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 1435324..1436709 Neisseria gonorrhoeae FA 1090 3281598 YP_208525.1 CDS NGO1473 NC_002946.2 1436917 1437495 R Best Blastp Hit: pir||D81979 hypothetical protein NMA0600 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379335|emb|CAB83890.1| (AL162753) hypothetical protein NMA0600 [Neisseria meningitidis]; COG2249 NADPH-quinone reductase, YabF; protein MdaB; modulator of drug activity complement(1436917..1437495) Neisseria gonorrhoeae FA 1090 3281639 YP_208526.1 CDS NGO1474 NC_002946.2 1437734 1438645 D Best Blastp Hit: pir||E81979 probable lysR-family transcription regulator NMA0601 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379336|emb|CAB83891.1| (AL162753) lysR-family transcriptional regulator [Neisseria meningitidis]; COG0583 Transcriptional regulators, LysR family; LysR family transcriptional regulator 1437734..1438645 Neisseria gonorrhoeae FA 1090 3281621 YP_208527.1 CDS NGO1475 NC_002946.2 1439310 1439669 R Best Blastp Hit: pir||B81195 conserved hypothetical protein NMB0479 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225707|gb|AAF40916.1| (AE002404) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7380635|emb|CAB85225.1| (AL162757) conserved hypothetical protein [Neisseria meningitidis]; COG2018 Uncharacterized ACR; distantly related; hypothetical protein complement(1439310..1439669) Neisseria gonorrhoeae FA 1090 3281636 YP_208528.1 CDS NGO1476 NC_002946.2 1439690 1440205 R Best Blastp Hit: pir||A81195 hypothetical protein NMB0478 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225706|gb|AAF40915.1| (AE002404) hypothetical protein [Neisseria meningitidis MC58] >gi|7380636|emb|CAB85226.1| (AL162757) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(1439690..1440205) Neisseria gonorrhoeae FA 1090 3281647 YP_208529.1 CDS NGO1478 NC_002946.2 1440881 1441126 R Best Blastp Hit: pir||G81194 hypothetical protein NMB0476 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225704|gb|AAF40913.1| (AE002404) hypothetical protein [Neisseria meningitidis MC58] >gi|7380638|emb|CAB85228.1| (AL162757) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(1440881..1441126) Neisseria gonorrhoeae FA 1090 3281672 YP_208530.1 CDS NGO1479 NC_002946.2 1441350 1441979 R Best Blastp Hit: pir||G81194 hypothetical protein NMB0476 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225704|gb|AAF40913.1| (AE002404) hypothetical protein [Neisseria meningitidis MC58] >gi|7380638|emb|CAB85228.1| (AL162757) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(1441350..1441979) Neisseria gonorrhoeae FA 1090 3281613 YP_208531.1 CDS NGO1481 NC_002946.2 1443640 1444422 R Best Blastp Hit: emb|CAB85230.1| (AL162757) conserved hypothetical protein [Neisseria meningitidis]; COG0500 SAM-dependent methyltransferases; hypothetical protein complement(1443640..1444422) Neisseria gonorrhoeae FA 1090 3281631 YP_208532.1 CDS NGO1482 NC_002946.2 1444410 1445057 R Best Blastp Hit: pir||G81830 conserved hypothetical protein NMA2012 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380641|emb|CAB85231.1| (AL162757) conserved hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(1444410..1445057) Neisseria gonorrhoeae FA 1090 3281632 YP_208533.1 CDS NGO1483 NC_002946.2 1445067 1446209 R catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase complement(1445067..1446209) Neisseria gonorrhoeae FA 1090 3281648 YP_208534.1 CDS NGO1484 NC_002946.2 1446432 1447508 D Best Blastp Hit: emb|CAB85233.1| (AL162757) hypothetical protein [Neisseria meningitidis]; COG1376 Uncharacterized ACR, ErfK family; hypothetical protein 1446432..1447508 Neisseria gonorrhoeae FA 1090 3281615 YP_208535.1 CDS NGO1485 NC_002946.2 1447712 1449178 R Best Blastp Hit: pir||A81194 C4-dicarboxylate transporter NMB0470 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225698|gb|AAF40907.1| (AE002404) C4-dicarboxylate transporter [Neisseria meningitidis MC58]; COG0471 Cation transporters; hypothetical protein complement(1447712..1449178) Neisseria gonorrhoeae FA 1090 3281622 YP_208536.1 CDS NGO1486 NC_002946.2 1449376 1450299 R catalyzes the formation of putrescine from agmatine; agmatinase complement(1449376..1450299) Neisseria gonorrhoeae FA 1090 3281617 YP_208537.1 CDS NGO1487 NC_002946.2 1450398 1452290 R catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase complement(1450398..1452290) Neisseria gonorrhoeae FA 1090 3281576 YP_208538.1 CDS NGO1488 NC_002946.2 1452457 1452741 R Best Blastp Hit: gb|AAF40904.1| (AE002403) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1452457..1452741) Neisseria gonorrhoeae FA 1090 3281602 YP_208539.1 CDS NGO1489 NC_002946.2 1452891 1454441 R Catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; aspartyl-tRNA synthetase complement(1452891..1454441) Neisseria gonorrhoeae FA 1090 3281601 YP_208540.1 CDS NGO1490 NC_002946.2 1454443 1454697 R Best Blastp Hit: pir||F81831 aspartate--tRNA ligase (EC 6.1.1.12) NMA2019 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380648|emb|CAB85238.1| (AL162757) aspartyl-tRNA synthetase [Neisseria meningitidis]; COG0173 Aspartyl-tRNA synthetase; aspartyl-tRNA synthetase complement(1454443..1454697) Neisseria gonorrhoeae FA 1090 3281608 YP_208541.1 CDS NGO1491 NC_002946.2 1454755 1455492 R Best Blastp Hit: pir||G81831 probable integral membrane protein NMA2020 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380649|emb|CAB85239.1| (AL162757) integral membrane protein [Neisseria meningitidis]; hypothetical protein complement(1454755..1455492) Neisseria gonorrhoeae FA 1090 3281559 YP_208542.1 CDS NGO1492 NC_002946.2 1455598 1456746 R Best Blastp Hit: emb|CAB85240.1| (AL162757) phopholipase [Neisseria meningitidis]; phospholipase complement(1455598..1456746) Neisseria gonorrhoeae FA 1090 3281596 YP_208543.1 CDS rpsT NC_002946.2 1456906 1457169 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(1456906..1457169) Neisseria gonorrhoeae FA 1090 3281600 YP_208544.1 CDS NGO1494 NC_002946.2 1457473 1458615 D Best Blastp Hit: pir||C81195 spermidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein NMB0462 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225689|gb|AAF40899.1| (AE002403) spermidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein [Neisseria meningitidis MC58]; COG0687 Spermidine/putrescine-binding periplasmic; ABC transporter periplasmic binding protein, polyamine 1457473..1458615 Neisseria gonorrhoeae FA 1090 3281586 YP_208545.1 CDS NGO1495 NC_002946.2 1460228 1462966 R Best Blastp Hit: gb|AAF74987.1| (AF124339) transferrin-binding protein A [Neisseria gonorrhoeae]; COG1629 Outer membrane receptor proteins, mostly; TbpA protein complement(1460228..1462966) Neisseria gonorrhoeae FA 1090 3281624 YP_208546.1 CDS NGO1496 NC_002946.2 1463053 1465164 R Best Blastp Hit: possibly phase variable - 8T residue homopolymer repeat in the coding sequence (ON); transferrin-binding protein B; TbpB complement(1463053..1465164) Neisseria gonorrhoeae FA 1090 3281568 YP_208547.1 CDS NGO1497 NC_002946.2 1465247 1465390 R hypothetical protein complement(1465247..1465390) Neisseria gonorrhoeae FA 1090 3281590 YP_208548.1 CDS NGO1498 NC_002946.2 1465500 1465661 R Best Blastp Hit: emb|CAB83896.1| (AL162753) hypothetical protein NMA0606 [Neisseria meningitidis]; hypothetical protein complement(1465500..1465661) Neisseria gonorrhoeae FA 1090 3281591 YP_208549.1 CDS NGO1499 NC_002946.2 1467069 1468178 D Best Blastp Hit: emb|CAB84863.1| (AL162756) hypothetical protein [Neisseria meningitidis]; hypothetical protein 1467069..1468178 Neisseria gonorrhoeae FA 1090 3281593 YP_208550.1 CDS NGO1500 NC_002946.2 1468907 1469719 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(1468907..1469719) Neisseria gonorrhoeae FA 1090 3281584 YP_208551.1 CDS NGO1501 NC_002946.2 1469908 1470369 D Best Blastp Hit: pir||F81832 conserved hypothetical protein NMA2027 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380656|emb|CAB85246.1| (AL162757) conserved hypothetical protein [Neisseria meningitidis]; COG0802 Predicted nucleotide-binding protein, YjeE; hypothetical protein 1469908..1470369 Neisseria gonorrhoeae FA 1090 3281583 YP_208552.1 CDS NGO1502 NC_002946.2 1470318 1471616 D Best Blastp Hit: gb|AAF06680.1|AF163663_5 (AF058689) N-acetylmuramoyl-L-alanine amidase-precursor AmiC [Neisseria meningitidis]; COG0860 N-acetylmuramoyl-L-alanine amidase; amidase 1470318..1471616 Neisseria gonorrhoeae FA 1090 3281582 YP_208553.1 CDS NGO1503 NC_002946.2 1471644 1472516 D Best Blastp Hit: emb|CAB85248.1| (AL162757) hypothetical protein [Neisseria meningitidis]; hypothetical protein 1471644..1472516 Neisseria gonorrhoeae FA 1090 3281545 YP_208554.1 CDS NGO1504 NC_002946.2 1472562 1473704 R Best Blastp Hit: gb|AAF40892.1| (AE002401) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0116 Predicted N6-adenine-specific DNA; hypothetical protein complement(1472562..1473704) Neisseria gonorrhoeae FA 1090 3281364 YP_208555.1 CDS NGO1505 NC_002946.2 1473753 1474175 R Best Blastp Hit: pir||H81197 probable secreted protein NMA2031, NMB0454 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|6274535|gb|AAF06683.1|AF163663_8 (AF058689) Tou4 [Neisseria meningitidis] >gi|6449089|gb|AAF08818.1|AF194079_5 (AF194079) Tou4 [Neisseria meningitidis] >gi|7225679|gb|AAF40891.1| (AE002401) hypothetical protein [Neisseria meningitidis MC58] >gi|7380660|emb|CAB85250.1| (AL162757) secreted protein [Neisseria meningitidis]; hypothetical protein complement(1473753..1474175) Neisseria gonorrhoeae FA 1090 3281572 YP_208556.1 CDS NGO1506 NC_002946.2 1474168 1474977 R Best Blastp Hit: gb|AAF40890.1| (AE002401) mutT protein [Neisseria meningitidis MC58]; COG0494 NTP pyrophosphohydrolases (MutT family); NTP pyrophosphohydrolase complement(1474168..1474977) Neisseria gonorrhoeae FA 1090 3281562 YP_208557.1 CDS acpS NC_002946.2 1475059 1475436 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(1475059..1475436) Neisseria gonorrhoeae FA 1090 3281569 YP_208558.1 CDS NGO1508 NC_002946.2 1475486 1476214 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(1475486..1476214) Neisseria gonorrhoeae FA 1090 3281573 YP_208559.1 CDS NGO1509 NC_002946.2 1476267 1477010 R Best Blastp Hit: sp|Q9ZHY2|RECO_NEIGO DNA repair protein RECO (recombination protein O) >gi|4105531|gb|AAD05426.1| (AF047375) RecO [Neisseria gonorrhoeae]; COG1381 Recombination protein RecO; hypothetical protein complement(1476267..1477010) Neisseria gonorrhoeae FA 1090 3281563 YP_208560.1 CDS NGO1510 NC_002946.2 1477047 1478174 R Best Blastp Hit: gb|AAD05425.1| (AF047375) PheA [Neisseria gonorrhoeae]; COG0077 Prephenate dehydratase; chorismate mutase complement(1477047..1478174) Neisseria gonorrhoeae FA 1090 3281542 YP_208561.1 CDS NGO1511 NC_002946.2 1477747 1479249 R Best Blastp Hit: gb|AAF08825.1|AF194079_12 (AF194079) Bcr [Neisseria meningitidis]; COG0477 Permeases; drug resistance protein complement(1477747..1479249) Neisseria gonorrhoeae FA 1090 3281571 YP_208562.1 CDS NGO1512 NC_002946.2 1479533 1480408 R Best Blastp Hit: gb|AAF40881.1| (AE002400) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0697 Predicted permeases; hypothetical protein complement(1479533..1480408) Neisseria gonorrhoeae FA 1090 3281508 YP_208563.1 CDS NGO1513 NC_002946.2 1481445 1482281 D Best Blastp Hit: phase variable - 13 tandem repeats of CTCTT in the coding sequence (ON); outer membrane opacity protein D; OpaD protein 1481445..1482281 Neisseria gonorrhoeae FA 1090 3281532 YP_208564.1 CDS NGO1514 NC_002946.2 1482948 1483862 R Best Blastp Hit: pir||B81199 nitrilase NMB0441 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225666|gb|AAF40879.1| (AE002400) nitrilase [Neisseria meningitidis MC58]; COG0388 Predicted amidohydrolase; hypothetical protein complement(1482948..1483862) Neisseria gonorrhoeae FA 1090 3281549 YP_208565.1 CDS NGO1515 NC_002946.2 1483845 1484717 D Best Blastp Hit: pir||A81775 probable oxidoreductase NMA2045 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380673|emb|CAB85263.1| (AL162758) oxidoreductase [Neisseria meningitidis]; COG0287 Prephenate dehydrogenase; oxidoreductase 1483845..1484717 Neisseria gonorrhoeae FA 1090 3281521 YP_208566.1 CDS NGO1516 NC_002946.2 1484775 1485977 R Best Blastp Hit: emb|CAB85264.1| (AL162758) hypothetical integral membrane protein [Neisseria meningitidis]; hypothetical protein complement(1484775..1485977) Neisseria gonorrhoeae FA 1090 3281510 YP_208567.1 CDS NGO1517 NC_002946.2 1485974 1486342 R Best Blastp Hit: pir||C81775 hypothetical protein NMA2047 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380675|emb|CAB85265.1| (AL162758) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(1485974..1486342) Neisseria gonorrhoeae FA 1090 3281503 YP_208568.1 CDS NGO1518 NC_002946.2 1486339 1487112 R Best Blastp Hit: emb|CAB63177.1| (AL133469) hypothetical protein SCM10.16c [Streptomyces coelicolor A3(2)]; hypothetical protein complement(1486339..1487112) Neisseria gonorrhoeae FA 1090 3281524 YP_208569.1 CDS NGO1519 NC_002946.2 1486516 1486959 D Best Blastp Hit: pir||D81775 conserved hypothetical protein NMA2048 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380676|emb|CAB85266.1| (AL162758) conserved hypothetical protein [Neisseria meningitidis]; COG1959 Uncharacterized BCR, YjeB/RRF2 family; hypothetical protein 1486516..1486959 Neisseria gonorrhoeae FA 1090 3281516 YP_208570.1 CDS NGO1520 NC_002946.2 1487121 1487825 R Best Blastp Hit: pir||E81198 conserved hypothetical protein NMB0436 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225661|gb|AAF40874.1| (AE002400) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0009 translation factor (SUA5); hypothetical protein complement(1487121..1487825) Neisseria gonorrhoeae FA 1090 3281538 YP_208571.1 CDS NGO1521 NC_002946.2 1487852 1489051 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(1487852..1489051) Neisseria gonorrhoeae FA 1090 3281543 YP_208572.1 CDS NGO1524 NC_002946.2 1493757 1494545 R Best Blastp Hit: gb|AAF40870.1| (AE002399) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0730 Predicted permeases; hypothetical protein complement(1493757..1494545) Neisseria gonorrhoeae FA 1090 3281527 YP_208573.1 CDS NGO1525 NC_002946.2 1494697 1495845 R catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase complement(1494697..1495845) Neisseria gonorrhoeae FA 1090 3281530 YP_208574.1 CDS prpB NC_002946.2 1495930 1496808 R catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase complement(1495930..1496808) Neisseria gonorrhoeae FA 1090 3281531 YP_208575.1 CDS NGO1527 NC_002946.2 1497426 1498736 R Best Blastp Hit: pir||D81776 conserved hypothetical protein NMA2056 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380684|emb|CAB85274.1| (AL162758) conserved hypothetical protein [Neisseria meningitidis]; COG2252 Permeases; hypothetical protein complement(1497426..1498736) Neisseria gonorrhoeae FA 1090 3281533 YP_208576.1 CDS NGO1528 NC_002946.2 1498872 1500050 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(1498872..1500050) Neisseria gonorrhoeae FA 1090 3281491 YP_208577.1 CDS NGO1529 NC_002946.2 1500169 1501413 R Best Blastp Hit: pir||E81201 cell division protein FtsA NMB0426 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225649|gb|AAF40864.1| (AE002398) cell division protein FtsA [Neisseria meningitidis MC58]; COG0849 Predicted ATPases of the HSP70 class; hypothetical protein complement(1500169..1501413) Neisseria gonorrhoeae FA 1090 3281555 YP_208578.1 CDS NGO1530 NC_002946.2 1501499 1502227 R Best Blastp Hit: pir||G81776 cell division protein NMA2059 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380687|emb|CAB85277.1| (AL162758) cell division protein [Neisseria meningitidis]; COG1589 Cell division septal protein FtsQ; hypothetical protein complement(1501499..1502227) Neisseria gonorrhoeae FA 1090 3281504 YP_208579.1 CDS ddl NC_002946.2 1502217 1503131 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase complement(1502217..1503131) Neisseria gonorrhoeae FA 1090 3281512 YP_208580.3 CDS murC NC_002946.2 1503243 1504649 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(1503243..1504649) Neisseria gonorrhoeae FA 1090 3281507 YP_208581.1 CDS murG NC_002946.2 1504807 1505874 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase complement(1504807..1505874) Neisseria gonorrhoeae FA 1090 3281523 YP_208582.1 CDS NGO1534 NC_002946.2 1505878 1507176 R Best Blastp Hit: pir||C81777 cell division protein NMA2063 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380691|emb|CAB85281.1| (AL162758) cell division protein [Neisseria meningitidis]; COG0772 Bacterial cell division membrane protein; hypothetical protein complement(1505878..1507176) Neisseria gonorrhoeae FA 1090 3281518 YP_208583.1 CDS murD NC_002946.2 1507328 1508665 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(1507328..1508665) Neisseria gonorrhoeae FA 1090 3281493 YP_208584.1 CDS NGO1536 NC_002946.2 1508750 1509130 R Best Blastp Hit: gb|AAF40857.1| (AE002398) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0790 TPR repeat proteins; hypothetical protein complement(1508750..1509130) Neisseria gonorrhoeae FA 1090 3281499 YP_208585.1 CDS mraY NC_002946.2 1509255 1510337 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(1509255..1510337) Neisseria gonorrhoeae FA 1090 3281456 YP_208586.1 CDS NGO1538 NC_002946.2 1510582 1510764 R Best Blastp Hit: emb|CAB85285.1| (AL162758) periplasmic protein [Neisseria meningitidis]; hypothetical protein complement(1510582..1510764) Neisseria gonorrhoeae FA 1090 3281490 YP_208587.1 CDS NGO1539 NC_002946.2 1510761 1512119 R Best Blastp Hit: emb|CAB85286.1| (AL162758) UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis]; COG0770 UDP-N-acetylmuramyl pentapeptide synthase; UDP-MurNAc-pentapeptide synthetase complement(1510761..1512119) Neisseria gonorrhoeae FA 1090 3281501 YP_208588.1 CDS NGO1540 NC_002946.2 1512244 1513890 R Best Blastp Hit: gb|AAF12796.1|AF195057_1 (AF195057) DcaA [Neisseria gonorrhoeae]; COG2194 Predicted membrane-associated; division cell wall protein complement(1512244..1513890) Neisseria gonorrhoeae FA 1090 3281506 YP_208589.1 CDS murE NC_002946.2 1513913 1515391 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(1513913..1515391) Neisseria gonorrhoeae FA 1090 3281489 YP_208590.1 CDS NGO1542 NC_002946.2 1515416 1517164 R Best Blastp Hit: pir||S49090 penicillin-binding protein 2 - Neisseria gonorrhoeae >gi|509155|emb|CAA42191.1| (X59632) penicillin-binding protein 2 [Neisseria gonorrhoeae]; COG0768 Cell division protein; Pbp2 complement(1515416..1517164) Neisseria gonorrhoeae FA 1090 3281451 YP_208591.1 CDS NGO1543 NC_002946.2 1517225 1517488 R Best Blastp Hit: gb|AAF40851.1| (AE002397) cell division protein FtsL-related protein [Neisseria meningitidis MC58] >gi|7380699|emb|CAB85290.1| (AL162758) small periplasmic protein [Neisseria meningitidis]; hypothetical protein complement(1517225..1517488) Neisseria gonorrhoeae FA 1090 3281486 YP_208592.1 CDS mraW NC_002946.2 1517515 1518471 R Best Blastp Hit: pir||D81778 conserved hypothetical protein NMA2074 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380700|emb|CAB85291.1| (AL162758) conserved hypothetical protein [Neisseria meningitidis]; COG0275 Predicted S-adenosylmethionine-dependent; S-adenosyl-methyltransferase MraW complement(1517515..1518471) Neisseria gonorrhoeae FA 1090 3281471 YP_208593.1 CDS NGO1545 NC_002946.2 1518468 1518923 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(1518468..1518923) Neisseria gonorrhoeae FA 1090 3281462 YP_208594.1 CDS NGO1546 NC_002946.2 1519202 1520449 D Best Blastp Hit: pir||F81778 conserved hypothetical protein NMA2076 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380702|emb|CAB85293.1| (AL162758) conserved hypothetical protein [Neisseria meningitidis]; COG1565 Uncharacterized ACR; hypothetical protein 1519202..1520449 Neisseria gonorrhoeae FA 1090 3281477 YP_208595.1 CDS NGO1547 NC_002946.2 1520890 1521711 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(1520890..1521711) Neisseria gonorrhoeae FA 1090 3281468 YP_208596.1 CDS NGO1548 NC_002946.2 1521744 1522388 R Best Blastp Hit: gb|AAF40846.1| (AE002396) thiol:disulfide interchange protein DsbA [Neisseria meningitidis MC58]; COG0526 Thiol-disulfide isomerase and thioredoxins; thiol-disulfide isomerase; DsbA family thiol:disulfide interchange protein complement(1521744..1522388) Neisseria gonorrhoeae FA 1090 3281487 YP_208597.1 CDS NGO1549 NC_002946.2 1522391 1523260 R Best Blastp Hit: pir||C81203 conserved hypothetical protein NMB0406 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225628|gb|AAF40845.1| (AE002396) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1522391..1523260) Neisseria gonorrhoeae FA 1090 3281481 YP_208598.1 CDS NGO1550 NC_002946.2 1523360 1524856 R Best Blastp Hit: pir||B81779 probable chelatase NMA2080 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380706|emb|CAB85297.1| (AL162758) chelatase [Neisseria meningitidis]; COG0606 Predicted ATPases; hypothetical protein complement(1523360..1524856) Neisseria gonorrhoeae FA 1090 3281480 YP_208599.1 CDS NGO1551 NC_002946.2 1524870 1525526 R Best Blastp Hit: emb|CAB85298.1| (AL162758) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(1524870..1525526) Neisseria gonorrhoeae FA 1090 3281321 YP_208600.1 CDS NGO1552 NC_002946.2 1525688 1527205 D Best Blastp Hit: pir||G81202 sodium/proline symporter NMB0402 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225624|gb|AAF40841.1| (AE002396) sodium/proline symporter [Neisseria meningitidis MC58] >gi|7380708|emb|CAB85299.1| (AL162758) sodium/proline symporter [Neisseria meningitidis]; COG0591 Na+/proline, Na+/panthothenate symporters; sodium/proline symporter, proline permease 1525688..1527205 Neisseria gonorrhoeae FA 1090 3281457 YP_208601.1 CDS NGO1556 NC_002946.2 1532253 1532615 R hypothetical protein complement(1532253..1532615) Neisseria gonorrhoeae FA 1090 3281413 YP_208602.1 CDS NGO1557 NC_002946.2 1532654 1532992 D hypothetical protein 1532654..1532992 Neisseria gonorrhoeae FA 1090 3281470 YP_208603.1 CDS NGO1558 NC_002946.2 1533130 1533348 R hypothetical protein complement(1533130..1533348) Neisseria gonorrhoeae FA 1090 3281443 YP_208604.1 CDS NGO1559 NC_002946.2 1533468 1534145 D Best Blastp Hit: gb|AAC33455.1| (AF067083) outer membrane protein homolog [Vitreoscilla sp.]; COG1360 Flagellar motor protein MotB; hypothetical protein 1533468..1534145 Neisseria gonorrhoeae FA 1090 3281400 YP_208605.1 CDS NGO1560 NC_002946.2 1534233 1534379 D hypothetical protein 1534233..1534379 Neisseria gonorrhoeae FA 1090 3281446 YP_208606.1 CDS NGO1561 NC_002946.2 1534419 1535189 R Best Blastp Hit: pir||G81204 exodeoxyribonuclease III NMB0399 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225621|gb|AAF40839.1| (AE002395) exodeoxyribonuclease III [Neisseria meningitidis MC58]; COG0708 Exonuclease III; exodeoxyribonuclease III complement(1534419..1535189) Neisseria gonorrhoeae FA 1090 3281442 YP_208607.1 CDS NGO1562 NC_002946.2 1535249 1535530 R Best Blastp Hit: gb|AAF40838.1| (AE002395) transcriptional regulator, ArsR family [Neisseria meningitidis MC58]; COG0640 Predicted transcriptional regulators; ArsR family transcriptional regulator complement(1535249..1535530) Neisseria gonorrhoeae FA 1090 3281458 YP_208608.1 CDS NGO1563 NC_002946.2 1535587 1535772 D hypothetical protein 1535587..1535772 Neisseria gonorrhoeae FA 1090 3281444 YP_208609.1 CDS NGO1564 NC_002946.2 1535783 1536034 D hypothetical protein 1535783..1536034 Neisseria gonorrhoeae FA 1090 3281473 YP_208610.1 CDS NGO1565 NC_002946.2 1536265 1537146 R Best Blastp Hit: pir||A81780 nicotinate-nucleotide pyrophosphorylase (carboxylating) (EC 2.4.2.19) NMA2088 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380713|emb|CAB85304.1| (AL162758) nicotinate-nucleotide pyrophosphorylase [Neisseria meningitidis]; COG0157 Nicotinate-nucleotide pyrophosphorylase; nicotinate-nucleotide pyrophosphorylase complement(1536265..1537146) Neisseria gonorrhoeae FA 1090 3281431 YP_208611.1 CDS NGO1566 NC_002946.2 1537222 1538160 R Best Blastp Hit: pir||C81204 conserved hypothetical protein NMB0395 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225617|gb|AAF40835.1| (AE002395) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1051 ADP-ribose pyrophosphatase; hypothetical protein complement(1537222..1538160) Neisseria gonorrhoeae FA 1090 3281359 YP_208612.1 CDS NGO1567 NC_002946.2 1538362 1539474 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1538362..1539474 Neisseria gonorrhoeae FA 1090 3281323 YP_208613.1 CDS NGO1568 NC_002946.2 1539526 1541034 D Best Blastp Hit: pir||H81203 l-aspartate oxidase NMB0392 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225614|gb|AAF40832.1| (AE002395) l-aspartate oxidase [Neisseria meningitidis MC58]; COG0029 Aspartate oxidase; hypothetical protein 1539526..1541034 Neisseria gonorrhoeae FA 1090 3281440 YP_208614.1 CDS NGO1573 NC_002946.2 1547577 1549253 D ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein 1547577..1549253 Neisseria gonorrhoeae FA 1090 3281424 YP_208615.1 CDS NGO1574 NC_002946.2 1549313 1549798 R Best Blastp Hit: pir||G81205 phosphatidylglycerophosphatase (EC 3.1.3.27) A NMA2102 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225607|gb|AAF40826.1| (AE002394) phosphatidylglycerophosphatase A [Neisseria meningitidis MC58] >gi|7380727|emb|CAB85318.1| (AL162758) phosphatidylglycerophosphatase A [Neisseria meningitidis]; COG1267 Phosphatidylglycerophosphatase A; hypothetical protein complement(1549313..1549798) Neisseria gonorrhoeae FA 1090 3281096 YP_208616.1 CDS NGO1575 NC_002946.2 1549791 1550747 R catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase complement(1549791..1550747) Neisseria gonorrhoeae FA 1090 3281409 YP_208617.1 CDS NGO1576 NC_002946.2 1551327 1551491 D hypothetical protein 1551327..1551491 Neisseria gonorrhoeae FA 1090 3281090 YP_208618.1 CDS NGO1577 NC_002946.2 1551522 1552232 R Best Blastp Hit: sp|P07050|OMP3_NEIGO outer membrane protein P.III precursor (gonococcal protein III) (PIII) >gi|78109|pir||A27894 outer membrane protein PIII precursor - Neisseria gonorrhoeae >gi|44890|emb|CAA28752.1| (X05105) PIII (AA 1-236) [Neisseria gonorrhoeae]; COG1360 Flagellar motor protein MotB; Omp3 complement(1551522..1552232) Neisseria gonorrhoeae FA 1090 3281426 YP_208619.1 CDS NGO1578 NC_002946.2 1552596 1553546 D Best Blastp Hit: pir||B81782 transcription regulator NMA2106 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380730|emb|CAB85321.1| (AL162758) transcriptional regulator [Neisseria meningitidis]; COG0583 Transcriptional regulators, LysR family; transcriptional regulator CysB-like protein 1552596..1553546 Neisseria gonorrhoeae FA 1090 3281421 YP_208620.1 CDS NGO1579 NC_002946.2 1553659 1554393 R Best Blastp Hit: gb|AAF40820.1| (AE002394) transcriptional regulator, Crp/Fnr family [Neisseria meningitidis MC58] >gi|7380731|emb|CAB85322.1| (AL162758) anaerobic transcriptional regulatory protein [Neisseria meningitidis]; COG0664 cAMP-binding domains - Catabolite gene; anaerobic transcriptional regulator complement(1553659..1554393) Neisseria gonorrhoeae FA 1090 3281427 YP_208621.1 CDS NGO1580 NC_002946.2 1554528 1555949 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1554528..1555949 Neisseria gonorrhoeae FA 1090 3281420 YP_208622.1 CDS NGO1581 NC_002946.2 1556189 1557763 R Best Blastp Hit: gb|AAF40818.1| (AE002393) phosphate permease, [Neisseria meningitidis MC58] >gi|7380733|emb|CAB85324.1| (AL162758) phosphate permease [Neisseria meningitidis]; COG0306 Phosphate permease; transporter complement(1556189..1557763) Neisseria gonorrhoeae FA 1090 3281088 YP_208623.1 CDS NGO1582 NC_002946.2 1557793 1557990 D hypothetical protein 1557793..1557990 Neisseria gonorrhoeae FA 1090 3281415 YP_208624.1 CDS anmK NC_002946.2 1558058 1559188 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 1558058..1559188 Neisseria gonorrhoeae FA 1090 3281341 YP_208625.1 CDS NGO1584 NC_002946.2 1559307 1560248 D Best Blastp Hit: pir||G81782 adhesin MafA2 NMA2112 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380735|emb|CAB85326.1| (AL162758) adhesin MafA2 [Neisseria meningitidis]; protein MafA3; MafA-like adhesin 1559307..1560248 Neisseria gonorrhoeae FA 1090 3281439 YP_208626.1 CDS NGO1585 NC_002946.2 1560252 1561982 D Best Blastp Hit: pir||H81782 adhesin MafB2 NMA2113 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380736|emb|CAB85327.1| (AL162758) adhesin MafB2 [Neisseria meningitidis]; protein MafB4; MafB-like adhesin 1560252..1561982 Neisseria gonorrhoeae FA 1090 3281080 YP_208627.1 CDS NGO1586 NC_002946.2 1561960 1562241 D Best Blastp Hit: emb|CAB85330.1| (AL162758) hypothetical protein [Neisseria meningitidis]; hypothetical protein 1561960..1562241 Neisseria gonorrhoeae FA 1090 3281151 YP_208628.1 CDS NGO1588 NC_002946.2 1562941 1563357 D Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); hypothetical protein 1562941..1563357 Neisseria gonorrhoeae FA 1090 3281111 YP_208629.1 CDS NGO1589 NC_002946.2 1563493 1564170 D Best Blastp Hit: possibly an alternative C terminus for MafB; hypothetical protein 1563493..1564170 Neisseria gonorrhoeae FA 1090 3282550 YP_208630.1 CDS NGO1590 NC_002946.2 1564176 1564574 D Best Blastp Hit: pir||A81207 hypothetical protein NMB0371 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225593|gb|AAF40813.1| (AE002393) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1564176..1564574 Neisseria gonorrhoeae FA 1090 3281100 YP_208631.1 CDS NGO1591 NC_002946.2 1564605 1564982 D Best Blastp Hit: pir||H81206 hypothetical protein NMB0370 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225592|gb|AAF40812.1| (AE002393) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1564605..1564982 Neisseria gonorrhoeae FA 1090 3281774 YP_208632.1 CDS NGO1592 NC_002946.2 1565113 1565850 D Best Blastp Hit: possibly an alternative C terminus for MafB; hypothetical protein 1565113..1565850 Neisseria gonorrhoeae FA 1090 3281715 YP_208633.1 CDS NGO1593 NC_002946.2 1565922 1566266 D Best Blastp Hit: pir||T29187 hypothetical protein C55C3.3 - Caenorhabditis elegans >gi|1255819|gb|AAA96170.1| (U53335) weak similarity in one exon to C. reinhardtii kinesin-like protein 1 (PIR:A53953) and in another exon to Drosophila 150 kDa dynein-associated polypeptide (GLUED protein) (PIR:A53953) [Caenorhabditis elegans]; hypothetical protein 1565922..1566266 Neisseria gonorrhoeae FA 1090 3281585 YP_208634.1 CDS NGO1594 NC_002946.2 1566514 1566786 D hypothetical protein 1566514..1566786 Neisseria gonorrhoeae FA 1090 3281653 YP_208635.1 CDS NGO1595 NC_002946.2 1566907 1567452 D Best Blastp Hit: sp|P45941|YQCF_BACSU hypothetical 21.5 KD protein in CWLA-CISA intergenic region >gi|7475297|pir||E69949 hypothetical protein yqcF - Bacillus subtilis >gi|1217878|dbj|BAA06963.1| (D32216) ORF95 [Bacillus subtilis] >gi|1303771|dbj|BAA12427.1| (D84432) YqcF [Bacillus subtilis] >gi|2635032|emb|CAB14528.1| (Z99117) yqcF [Bacillus subtilis]; hypothetical protein 1566907..1567452 Neisseria gonorrhoeae FA 1090 3281738 YP_208636.1 CDS NGO1596 NC_002946.2 1567856 1568257 D Best Blastp Hit: pir||D81174 hypothetical protein NMB0659 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225885|gb|AAF41078.1| (AE002420) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1567856..1568257 Neisseria gonorrhoeae FA 1090 3281735 YP_208637.1 CDS NGO1597 NC_002946.2 1568599 1570263 R hypothetical protein complement(1568599..1570263) Neisseria gonorrhoeae FA 1090 3281664 YP_208638.1 CDS NGO1598 NC_002946.2 1570369 1570644 R Best Blastp Hit: gb|AAC44904.1| (U82701) [Neisseria gonorrhoeae]; hypothetical protein complement(1570369..1570644) Neisseria gonorrhoeae FA 1090 3281646 YP_208639.1 CDS NGO1599 NC_002946.2 1570641 1571924 R Best Blastp Hit: possibly phase variable - 8T residue homopolymer repeat in the coding sequence (ON); COG0477 Permeases; signal transducer protein; AmpG protein complement(1570641..1571924) Neisseria gonorrhoeae FA 1090 3281643 YP_208640.1 CDS NGO1600 NC_002946.2 1572073 1573491 R Best Blastp Hit: gb|AAC44901.1| (U82700) glutamine synthetase [Neisseria gonorrhoeae]; COG0174 Glutamine synthase; hypothetical protein complement(1572073..1573491) Neisseria gonorrhoeae FA 1090 3281610 YP_208641.1 CDS NGO1601 NC_002946.2 1572106 1573584 D Best Blastp Hit: gb|AAB61771.1| (M84113) ORF1 [Neisseria gonorrhoeae]; hypothetical protein 1572106..1573584 Neisseria gonorrhoeae FA 1090 3281577 YP_208642.1 CDS NGO1602 NC_002946.2 1573802 1574611 D Best Blastp Hit: gb|AAC44913.1| (U82842) shikimate dehydrogenase [Neisseria gonorrhoeae]; COG0169 Shikimate 5-dehydrogenase; shikimate dehydrogenase 1573802..1574611 Neisseria gonorrhoeae FA 1090 3281609 YP_208643.1 CDS mtgA NC_002946.2 1574614 1575315 D glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 1574614..1575315 Neisseria gonorrhoeae FA 1090 3281606 YP_208644.1 CDS NGO1604 NC_002946.2 1575327 1575569 D Best Blastp Hit: pir||G81933 hypothetical protein NMA0876 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379591|emb|CAB84156.1| (AL162754) hypothetical protein NMA0876 [Neisseria meningitidis]; hypothetical protein 1575327..1575569 Neisseria gonorrhoeae FA 1090 3281557 YP_208645.1 CDS NGO1605 NC_002946.2 1575855 1576589 R Best Blastp Hit: emb|CAB85343.1| (AL162758) ABC transporter ATP-binding protein [Neisseria meningitidis]; COG1137 ABC-type (unclassified) transport system; ABC transporter ATP-binding protein complement(1575855..1576589) Neisseria gonorrhoeae FA 1090 3281566 YP_208646.1 CDS NGO1606 NC_002946.2 1576660 1577190 R Best Blastp Hit: pir||B81208 conserved hypothetical protein NMB0355 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225577|gb|AAF40798.1| (AE002392) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7380753|emb|CAB85344.1| (AL162758) outer membrane hypothetical protein [Neisseria meningitidis]; COG1934 Uncharacterized BCR; hypothetical protein complement(1576660..1577190) Neisseria gonorrhoeae FA 1090 3281550 YP_208647.1 CDS NGO1607 NC_002946.2 1577171 1577752 R Best Blastp Hit: pir||A81208 hypothetical protein NMB0354 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225576|gb|AAF40797.1| (AE002392) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1577171..1577752) Neisseria gonorrhoeae FA 1090 3281514 YP_208648.1 CDS NGO1608 NC_002946.2 1577749 1578312 R Best Blastp Hit: pir||C81785 conserved hypothetical protein NMA2134 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380755|emb|CAB85346.1| (AL162758) conserved hypothetical protein [Neisseria meningitidis]; COG1778 Uncharacterized proteins of HAD; hypothetical protein complement(1577749..1578312) Neisseria gonorrhoeae FA 1090 3281547 YP_208649.1 CDS NGO1609 NC_002946.2 1578351 1579406 R Best Blastp Hit: pir||D81785 conserved hypothetical protein NMA2135 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380756|emb|CAB85347.1| (AL162758) conserved hypothetical protein [Neisseria meningitidis]; COG0794 Predicted sugar phosphate aminotransferases; polysialic acid capsule expression protein; KpsF complement(1578351..1579406) Neisseria gonorrhoeae FA 1090 3281540 YP_208650.1 CDS NGO1610 NC_002946.2 1579422 1580477 D catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; transaldolase 1579422..1580477 Neisseria gonorrhoeae FA 1090 3281445 YP_208651.1 CDS NGO1611 NC_002946.2 1580935 1581822 D this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase 1580935..1581822 Neisseria gonorrhoeae FA 1090 3281447 YP_208652.1 CDS NGO1612 NC_002946.2 1581892 1582938 R Best Blastp Hit: pir||H81785 conserved hypothetical protein NMA2139 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380760|emb|CAB85351.1| (AL162758) conserved hypothetical protein [Neisseria meningitidis]; COG0042 Predicted TIM-barrel enzymes, possibly; tRNA-dihydrouridine synthase A complement(1581892..1582938) Neisseria gonorrhoeae FA 1090 3281437 YP_208653.1 CDS NGO1613 NC_002946.2 1583028 1584182 D Best Blastp Hit: emb|CAB96965.1| (AJ251482) hypothetical protein [Pseudomonas syringae pv. pisi]; integrase/recombinase, phage associated protein 1583028..1584182 Neisseria gonorrhoeae FA 1090 3281247 YP_208654.1 CDS NGO1614 NC_002946.2 1584232 1584498 R phage associated protein complement(1584232..1584498) Neisseria gonorrhoeae FA 1090 3281478 YP_208655.1 CDS NGO1615 NC_002946.2 1584606 1585754 R Best Blastp Hit: pir||I41051 hsdM protein - Escherichia coli >gi|450688|emb|CAA53205.1| (X75452) hsdM gene of EcoprrI [Escherichia coli]; phage associated protein complement(1584606..1585754) Neisseria gonorrhoeae FA 1090 3281580 YP_208656.1 CDS NGO1616 NC_002946.2 1585751 1586734 R Best Blastp Hit: gi|10955548 translocator YopD [Yersinia enterocolitica] >gi|586795|sp|P37132|YOPD_YEREN YOPD protein >gi|4324335|gb|AAD16812.1| (AF102990) translocator YopD [Yersinia enterocolitica]; phage associated protein complement(1585751..1586734) Neisseria gonorrhoeae FA 1090 3281565 YP_208657.1 CDS NGO1617 NC_002946.2 1586845 1587060 R Best Blastp Hit: pir||A71978 methyl-accepting chemotaxis protein (MCP) - Helicobacter pylori (strain J99) >gi|4154575|gb|AAD05650.1| (AE001446) methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]; phage associated protein complement(1586845..1587060) Neisseria gonorrhoeae FA 1090 3281587 YP_208658.1 CDS NGO1618 NC_002946.2 1587112 1587603 R Best Blastp Hit: pir||T13296 hypothetical protein 8 - Streptococcus phage phi-O1205 >gi|2444088|gb|AAC79524.1| (U88974) ORF8 [Streptococcus thermophilus temperate bacteriophage O1205]; phage associated protein complement(1587112..1587603) Neisseria gonorrhoeae FA 1090 3281324 YP_208659.1 CDS NGO1619 NC_002946.2 1587600 1587782 R Best Blastp Hit: emb|CAA61912.1| (X89769) fructose-1,6-bisphosphate aldolase [Euglena gracilis]; phage associated protein complement(1587600..1587782) Neisseria gonorrhoeae FA 1090 3281309 YP_208660.1 CDS NGO1620 NC_002946.2 1587922 1588425 R Best Blastp Hit: emb|CAB63672.1| (AJ251789) hypothetical protein [Lactobacillus casei bacteriophage A2]; phage associated protein complement(1587922..1588425) Neisseria gonorrhoeae FA 1090 3281414 YP_208661.1 CDS NGO1621 NC_002946.2 1588677 1588838 R phage associated protein complement(1588677..1588838) Neisseria gonorrhoeae FA 1090 3281429 YP_208662.1 CDS NGO1622 NC_002946.2 1588835 1589110 R Best Blastp Hit: gb|AAF41312.1| (AE002442) hypothetical protein [Neisseria meningitidis MC58]; phage associated protein complement(1588835..1589110) Neisseria gonorrhoeae FA 1090 3281266 YP_208663.1 CDS NGO1623 NC_002946.2 1589263 1589550 R phage associated protein complement(1589263..1589550) Neisseria gonorrhoeae FA 1090 3281370 YP_208664.1 CDS NGO1624 NC_002946.2 1589736 1589936 R phage associated protein complement(1589736..1589936) Neisseria gonorrhoeae FA 1090 3281170 YP_208665.1 CDS NGO1625 NC_002946.2 1590177 1590593 R phage associated protein complement(1590177..1590593) Neisseria gonorrhoeae FA 1090 3281405 YP_208666.1 CDS NGO1626 NC_002946.2 1590602 1591249 R Best Blastp Hit: gb|AAF30438.1|AE002103_3 (AE002103) hypothetical [Ureaplasma urealyticum]; phage associated protein complement(1590602..1591249) Neisseria gonorrhoeae FA 1090 3281393 YP_208667.1 CDS NGO1627 NC_002946.2 1591369 1591770 R Best Blastp Hit: gi|9628618 orf14 [Bacteriophage HP1] >gi|1730858|sp|P51716|YO14_BPHP1 hypothetical 14.9 KD protein in REP-HOL intergenic region (ORF14) >gi|2120197|pir||S69520 hypothetical protein 14 - phage HP1 >gi|1046241|gb|AAB09199.1| (U24159) orf14 [Bacteriophage HP1]; phage associated protein complement(1591369..1591770) Neisseria gonorrhoeae FA 1090 3281398 YP_208668.1 CDS NGO1628 NC_002946.2 1591873 1592055 R Best Blastp Hit: pir||S75025 hypothetical protein slr1999 - Synechocystis sp. (strain PCC 6803) >gi|1652970|dbj|BAA17887.1| (D90910) hypothetical protein [Synechocystis sp.]; COG1598 Uncharacterized ACR; phage associated protein complement(1591873..1592055) Neisseria gonorrhoeae FA 1090 3281389 YP_208669.1 CDS NGO1629 NC_002946.2 1592225 1593043 R phage associated protein complement(1592225..1593043) Neisseria gonorrhoeae FA 1090 3281373 YP_208670.1 CDS NGO1630 NC_002946.2 1593316 1594071 R Best Blastp Hit: pdb|1LLI|B Chain B, Lambda Repressor Mutant With Val 36 Replaced By Leu, Met 40 Replaced By Leu, And Val 47 Replaced By Ile (V36l,M40l,V47i) Complexed With Dna Operator >gi|640244|pdb|1LLI|A Chain A, Lambda Repressor Mutant With Val 36 Replaced By Leu, Met 40 Replaced By Leu, And Val 47 Replaced By Ile (V36l,M40l,V47i) Complexed With Dna Operator; phage repressor protein, phage associated protein complement(1593316..1594071) Neisseria gonorrhoeae FA 1090 3281384 YP_208671.1 CDS NGO1631 NC_002946.2 1594482 1594637 D phage associated protein 1594482..1594637 Neisseria gonorrhoeae FA 1090 3281150 YP_208672.1 CDS NGO1632 NC_002946.2 1594614 1594802 R phage associated protein complement(1594614..1594802) Neisseria gonorrhoeae FA 1090 3281174 YP_208673.1 CDS NGO1633 NC_002946.2 1594975 1595202 D phage associated protein 1594975..1595202 Neisseria gonorrhoeae FA 1090 3281378 YP_208674.1 CDS NGO1634 NC_002946.2 1595199 1595750 D Best Blastp Hit: pir||S30432 hypothetical protein - Streptomyces clavuligerus plasmid pSCL; phage associated protein 1595199..1595750 Neisseria gonorrhoeae FA 1090 3281353 YP_208675.1 CDS NGO1635 NC_002946.2 1596026 1596241 D phage associated protein 1596026..1596241 Neisseria gonorrhoeae FA 1090 3281367 YP_208676.1 CDS NGO1636 NC_002946.2 1596419 1597036 D Best Blastp Hit: pir||T03011 dnaC protein homolog - Salmonella typhimurium >gi|3294483|gb|AAC26072.1| (AF001386) unknown [Salmonella typhimurium]; COG1484 DNA replication protein DnaC; DNA replication protein, phage associated protein 1596419..1597036 Neisseria gonorrhoeae FA 1090 3281380 YP_208677.1 CDS NGO1637 NC_002946.2 1597106 1597261 D phage associated protein 1597106..1597261 Neisseria gonorrhoeae FA 1090 3281379 YP_208678.1 CDS NGO1638 NC_002946.2 1597352 1597846 D phage associated protein 1597352..1597846 Neisseria gonorrhoeae FA 1090 3281361 YP_208679.1 CDS NGO1639 NC_002946.2 1597884 1598387 R Best Blastp Hit: gb|AAF41506.1| (AE002461) hypothetical protein [Neisseria meningitidis MC58]; phage associated protein complement(1597884..1598387) Neisseria gonorrhoeae FA 1090 3281347 YP_208680.1 CDS NGO1640 NC_002946.2 1598474 1599049 D Best Blastp Hit: sp|Q37873|RUSA_BP82 crossover junction endodeoxyribonuclease RusA (Holliday junction nuclease RuSA) (Holliday juction resolvase) >gi|2120247|pir||S66583 crossover junction endodeoxyribonuclease (EC 3.1.22.4) rusA - phage 82 >gi|1051116|emb|CAA63330.1| (X92588) Can suppress the phenotype of ruv mutants [Bacteriophage 82]; phage associated protein 1598474..1599049 Neisseria gonorrhoeae FA 1090 3281355 YP_208681.1 CDS NGO1641 NC_002946.2 1599378 1600340 R Best Blastp Hit: gb|AAC82509.1| (U65994) pilin gene inverting protein homolog PivNG [Neisseria gonorrhoeae]; invertase related gene 6 (Irg6), phage associated protein complement(1599378..1600340) Neisseria gonorrhoeae FA 1090 3281314 YP_208682.1 CDS NGO1642 NC_002946.2 1600891 1601214 R Best Blastp Hit: sp|Q09256|YQB3_CAEEL hypothetical 16.6 KD protein C30G12.3 in chromosome II >gi|7496734|pir||T15714 hypothetical protein C30G12.3 - Caenorhabditis elegans >gi|687835|gb|AAC46672.1| (U21319) C30G12.3 gene product [Caenorhabditis elegans]; phage associated protein complement(1600891..1601214) Neisseria gonorrhoeae FA 1090 3281348 YP_208683.1 CDS NGO1643 NC_002946.2 1601335 1602420 R Best Blastp Hit: gb|AAF42092.1| (AE002524) conserved hypothetical protein [Neisseria meningitidis MC58]; phage associated protein complement(1601335..1602420) Neisseria gonorrhoeae FA 1090 3281329 YP_208684.1 CDS NGO1645 NC_002946.2 1602430 1602720 R Best Blastp Hit: gb|AAF42091.1| (AE002524) conserved hypothetical protein [Neisseria meningitidis MC58]; phage associated protein complement(1602430..1602720) Neisseria gonorrhoeae FA 1090 3281340 YP_208685.1 CDS NGO1646 NC_002946.2 1603894 1604178 D Best Blastp Hit: emb|CAB85024.1| (AL162757) integral membrane protein [Neisseria meningitidis]; phage associated protein 1603894..1604178 Neisseria gonorrhoeae FA 1090 3281344 YP_208686.1 CDS NGO1647 NC_002946.2 1604179 1605366 D Best Blastp Hit: emb|CAB85025.1| (AL162757) hypothetical protein [Neisseria meningitidis]; phage associated protein 1604179..1605366 Neisseria gonorrhoeae FA 1090 3281342 YP_208687.1 CDS NGO1648 NC_002946.2 1605581 1606537 D Best Blastp Hit: pir||E81070 pilin gene inverting protein PivNM-1A NMB1552,NMB1625 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226799|gb|AAF41907.1| (AE002505) pilin gene inverting protein PivNM-1A [Neisseria meningitidis MC58] >gi|7226876|gb|AAF41976.1| (AE002513) pilin gene inverting protein PivNM-1B [Neisseria meningitidis MC58]; invertase related gene 7, phage associated protein 1605581..1606537 Neisseria gonorrhoeae FA 1090 3281292 YP_208688.1 CDS NGO1649 NC_002946.2 1606828 1607367 D phage associated protein 1606828..1607367 Neisseria gonorrhoeae FA 1090 3281332 YP_208689.1 CDS NGO1650 NC_002946.2 1607368 1607712 D Best Blastp Hit: pir||B81142 hypothetical protein NMB0912 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226150|gb|AAF41320.1| (AE002443) hypothetical protein [Neisseria meningitidis MC58]; phage associated protein 1607368..1607712 Neisseria gonorrhoeae FA 1090 3281352 YP_208690.1 CDS NGO1651 NC_002946.2 1608229 1608609 D Best Blastp Hit: gb|AAF41305.1| (AE002442) hypothetical protein [Neisseria meningitidis MC58]; phage associated protein 1608229..1608609 Neisseria gonorrhoeae FA 1090 3281335 YP_208691.1 CDS NGO1652 NC_002946.2 1608810 1609808 R Best Blastp Hit: pir||A81144 hypothetical protein NMB0900 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226137|gb|AAF41308.1| (AE002442) hypothetical protein [Neisseria meningitidis MC58]; phage associated protein complement(1608810..1609808) Neisseria gonorrhoeae FA 1090 3281218 YP_208692.1 CDS NGO1653 NC_002946.2 1610151 1610327 R Best Blastp Hit: emb|CAB84546.1| (AL162755) hypothetical protein NMA1294 [Neisseria meningitidis]; hypothetical protein complement(1610151..1610327) Neisseria gonorrhoeae FA 1090 3281331 YP_208693.1 CDS NGO1654 NC_002946.2 1610655 1611146 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(1610655..1611146) Neisseria gonorrhoeae FA 1090 3281339 YP_208694.1 CDS NGO1655 NC_002946.2 1611220 1611978 R Best Blastp Hit: pir||B81786 hypothetical protein NMA2141 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380762|emb|CAB85353.1| (AL162758) hypothetical protein [Neisseria meningitidis]; COG0760 Parvulin-like peptidyl-prolyl isomerase; hypothetical protein complement(1611220..1611978) Neisseria gonorrhoeae FA 1090 3281306 YP_208695.1 CDS NGO1656 NC_002946.2 1612048 1612914 R Best Blastp Hit: gb|AAF40788.1| (AE002391) cell-binding factor, [Neisseria meningitidis MC58] >gi|7380763|emb|CAB85354.1| (AL162758) periplasmi hypothetical protein [Neisseria meningitidis]; COG0760 Parvulin-like peptidyl-prolyl isomerase; hypothetical protein complement(1612048..1612914) Neisseria gonorrhoeae FA 1090 3281308 YP_208696.1 CDS NGO1657 NC_002946.2 1612963 1613241 R Best Blastp Hit: gb|AAF40787.1| (AE002391) BolA/YrbA family protein [Neisseria meningitidis MC58]; COG0271 Stress-induced morphogen BolA (activity; hypothetical protein complement(1612963..1613241) Neisseria gonorrhoeae FA 1090 3281281 YP_208697.1 CDS NGO1658 NC_002946.2 1613241 1613531 R unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; hypothetical protein complement(1613241..1613531) Neisseria gonorrhoeae FA 1090 3281273 YP_208698.1 CDS NGO1659 NC_002946.2 1613534 1614064 R Involved in cell division; probably involved in intracellular septation; intracellular septation protein A complement(1613534..1614064) Neisseria gonorrhoeae FA 1090 3281261 YP_208699.1 CDS NGO1662 NC_002946.2 1617306 1618475 R Best Blastp Hit: gb|AAF40782.1| (AE002390) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1617306..1618475) Neisseria gonorrhoeae FA 1090 3281303 YP_208700.1 CDS NGO1663 NC_002946.2 1618486 1618800 R Best Blastp Hit: emb|CAB85361.1| (AL162758) inner membrane hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(1618486..1618800) Neisseria gonorrhoeae FA 1090 3281307 YP_208701.1 CDS NGO1664 NC_002946.2 1618903 1619079 D Best Blastp Hit: emb|CAB85362.1| (AL162758) hypothetical protein [Neisseria meningitidis]; hypothetical protein 1618903..1619079 Neisseria gonorrhoeae FA 1090 3281302 YP_208702.1 CDS NGO1665 NC_002946.2 1619110 1620108 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 1619110..1620108 Neisseria gonorrhoeae FA 1090 3281289 YP_208703.1 CDS NGO1666 NC_002946.2 1620353 1621138 R Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase complement(1620353..1621138) Neisseria gonorrhoeae FA 1090 3281284 YP_208704.1 CDS dapD NC_002946.2 1621293 1622114 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(1621293..1622114) Neisseria gonorrhoeae FA 1090 3281268 YP_208705.1 CDS pgi NC_002946.2 1622324 1623967 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(1622324..1623967) Neisseria gonorrhoeae FA 1090 3281318 YP_208706.1 CDS NGO1669 NC_002946.2 1624476 1625708 D Best Blastp Hit: pir||S77585 pilus assembly protein pilG - Neisseria gonorrhoeae >gi|639480|gb|AAC43469.1| (U32588) PilG [Neisseria gonorrhoeae]; COG1459 General secretion pathway protein F; PilG 1624476..1625708 Neisseria gonorrhoeae FA 1090 3281254 YP_208707.1 CDS NGO1670 NC_002946.2 1625782 1626642 D Best Blastp Hit: sp|P33566|LEP4_NEIGO type 4 prepilin-like proteins leader peptide processing enzyme [includes: leader peptidase (prepilin peptidase); N-methyltransferase ] >gi|996088|gb|AAC43468.1| (U32588) PilD [Neisseria gonorrhoeae]; COG1989 Signal peptidase HopD, cleaves; type IV prepilin peptidase; protein PilD 1625782..1626642 Neisseria gonorrhoeae FA 1090 3281275 YP_208708.1 CDS NGO1671 NC_002946.2 1626600 1627271 D Best Blastp Hit: pir||S77586 hypothetical protein X - Neisseria gonorrhoeae >gi|996087|gb|AAC43467.1| (U32588) OrfX [Neisseria gonorrhoeae]; COG0237 Predicted ATPase; hypothetical protein 1626600..1627271 Neisseria gonorrhoeae FA 1090 3281272 YP_208709.1 CDS NGO1672 NC_002946.2 1627156 1627473 D Best Blastp Hit: pir||S77587 hypothetical protein Y - Neisseria gonorrhoeae >gi|996086|gb|AAC43466.1| (U32588) ORFY; non-essential for pilus assembly; [Neisseria gonorrhoeae]; hypothetical protein 1627156..1627473 Neisseria gonorrhoeae FA 1090 3281270 YP_208710.1 CDS NGO1673 NC_002946.2 1627559 1629235 R Best Blastp Hit: sp|P37094|PILF_NEIGO type IV pilus assembly protein PilF >gi|420911|pir||S32914 pilF protein - Neisseria gonorrhoeae >gi|996085|gb|AAC43465.1| (U32588) PilF [Neisseria gonorrhoeae]; COG0630 Predicted ATPases involved in pili; PilF complement(1627559..1629235) Neisseria gonorrhoeae FA 1090 3281222 YP_208711.1 CDS NGO1674 NC_002946.2 1629573 1630019 R Best Blastp Hit: pir||E81788 conserved hypothetical protein NMA2160 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380781|emb|CAB85372.1| (AL162758) conserved hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(1629573..1630019) Neisseria gonorrhoeae FA 1090 3281245 YP_208712.1 CDS NGO1675 NC_002946.2 1630023 1630997 R Best Blastp Hit: pir||A81213 octaprenyl-diphosphate synthase (EC 2.5.1.-) NMA2161 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225547|gb|AAF40771.1| (AE002389) octaprenyl-diphosphate synthase [Neisseria meningitidis MC58] >gi|7380782|emb|CAB85373.1| (AL162758) octaprenyl-diphosphate synthase [Neisseria meningitidis]; COG0142 Geranylgeranyl pyrophosphate synthase; IspB protein complement(1630023..1630997) Neisseria gonorrhoeae FA 1090 3281251 YP_208713.1 CDS rplU NC_002946.2 1631221 1631529 D Best Blastp Hit: pir||H81212 50S ribosomal protein L21 NMB0325 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225546|gb|AAF40770.1| (AE002389) 50S ribosomal protein L21 [Neisseria meningitidis MC58] >gi|7380783|emb|CAB85374.1| (AL162758) 50S ribosomal protein L21 [Neisseria meningitidis]; COG0261 Ribosomal protein L21; 50S ribosomal protein L21 1631221..1631529 Neisseria gonorrhoeae FA 1090 3281255 YP_208714.1 CDS rpmA NC_002946.2 1631554 1631826 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1631554..1631826 Neisseria gonorrhoeae FA 1090 3281215 YP_208715.1 CDS NGO1678 NC_002946.2 1632061 1633245 D Best Blastp Hit: emb|CAB85376.1| (AL162758) monooxygenase [Neisseria meningitidis]; COG0654 2-Octaprenyl-6-metoxyphenol hydroxylase; hypothetical protein 1632061..1633245 Neisseria gonorrhoeae FA 1090 3281223 YP_208716.1 CDS rpmG NC_002946.2 1633434 1633589 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(1633434..1633589) Neisseria gonorrhoeae FA 1090 3281231 YP_208717.1 CDS rpmB NC_002946.2 1633621 1633854 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(1633621..1633854) Neisseria gonorrhoeae FA 1090 3281200 YP_208718.1 CDS NGO1681 NC_002946.2 1633926 1634114 R Best Blastp Hit: emb|CAB85379.1| (AL162758) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(1633926..1634114) Neisseria gonorrhoeae FA 1090 3281246 YP_208719.1 CDS NGO1682 NC_002946.2 1634104 1635627 R Best Blastp Hit: gb|AAD54074.1| (AF132910) efflux pump protein FarB [Neisseria gonorrhoeae]; COG0477 Permeases; efflux pump protein, fatty acid resistance complement(1634104..1635627) Neisseria gonorrhoeae FA 1090 3281262 YP_208720.1 CDS NGO1683 NC_002946.2 1635651 1636835 R Best Blastp Hit: possibly phase variable - 8T residue homopolymer repeat in the coding sequence (ON); COG1566 Multidrug resistance efflux pump; efflux pump protein, fatty acid resistance complement(1635651..1636835) Neisseria gonorrhoeae FA 1090 3281238 YP_208721.1 CDS NGO1684 NC_002946.2 1637094 1637567 D NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1637094..1637567 Neisseria gonorrhoeae FA 1090 3281260 YP_208722.1 CDS NGO1685 NC_002946.2 1637642 1638328 D Best Blastp Hit: pir||B81214 conserved hypothetical protein NMB0316 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225536|gb|AAF40761.1| (AE002388) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1738 Uncharacterized ACR, YhhQ family; hypothetical protein 1637642..1638328 Neisseria gonorrhoeae FA 1090 3281207 YP_208723.1 CDS NGO1686 NC_002946.2 1638678 1639970 R Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); COG0739 Membrane proteins related to; hypothetical protein complement(1638678..1639970) Neisseria gonorrhoeae FA 1090 3281229 YP_208724.1 CDS NGO1687 NC_002946.2 1639882 1641015 D Best Blastp Hit: pir||B81790 hypothetical protein NMA2173 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380794|emb|CAB85385.1| (AL162758) hypothetical protein [Neisseria meningitidis]; hypothetical protein 1639882..1641015 Neisseria gonorrhoeae FA 1090 3281209 YP_208725.1 CDS NGO1688 NC_002946.2 1641216 1642685 R Best Blastp Hit: emb|CAB85386.1| (AL162758) conserved hypothetical protein [Neisseria meningitidis]; outer membrane protein OmpU complement(1641216..1642685) Neisseria gonorrhoeae FA 1090 3281210 YP_208726.1 CDS NGO1690 NC_002946.2 1644374 1644619 R Best Blastp Hit: gb|AAF40757.1| (AE002388) hypothetical protein [Neisseria meningitidis MC58] >gi|7380797|emb|CAB85388.1| (AL162758) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(1644374..1644619) Neisseria gonorrhoeae FA 1090 3281217 YP_208727.1 CDS NGO1691 NC_002946.2 1644588 1644734 D hypothetical protein 1644588..1644734 Neisseria gonorrhoeae FA 1090 3281197 YP_208728.1 CDS NGO1692 NC_002946.2 1644722 1645159 D Best Blastp Hit: pir||F81790 conserved hypothetical inner membrane protein NMA2177 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380798|emb|CAB85389.1| (AL162758) conserved hypothetical inner membrane protein [Neisseria meningitidis]; COG1981 Predicted membrane protein; hypothetical protein 1644722..1645159 Neisseria gonorrhoeae FA 1090 3281220 YP_208729.1 CDS NGO1693 NC_002946.2 1645171 1645647 D Best Blastp Hit: pir||D81213 conserved hypothetical protein NMB0309 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225530|gb|AAF40755.1| (AE002388) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1645171..1645647 Neisseria gonorrhoeae FA 1090 3281185 YP_208730.1 CDS NGO1694 NC_002946.2 1645677 1646165 R Best Blastp Hit: sp|P04174|DYR_NEIGO dihydrofolate reductase >gi|66103|pir||RDNHD dihydrofolate reductase (EC 1.5.1.3) - Neisseria gonorrhoeae; COG0262 Dihydrofolate reductase; hypothetical protein complement(1645677..1646165) Neisseria gonorrhoeae FA 1090 3281193 YP_208731.1 CDS NGO1695 NC_002946.2 1646233 1647288 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1646233..1647288) Neisseria gonorrhoeae FA 1090 3281208 YP_208732.1 CDS NGO1699 NC_002946.2 1655425 1656231 R Best Blastp Hit: gb|AAF40747.1| (AE002386) CcsA-related protein [Neisseria meningitidis MC58]; hypothetical protein complement(1655425..1656231) Neisseria gonorrhoeae FA 1090 3281214 YP_208733.1 CDS NGO1700 NC_002946.2 1656451 1657821 D Best Blastp Hit: pir||F81215 signal recognition particle protein NMB0295 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225519|gb|AAF40746.1| (AE002386) signal recognition particle protein [Neisseria meningitidis MC58]; COG0541 Signal recognition particle GTPase Ffh; signal recognition particle protein 1656451..1657821 Neisseria gonorrhoeae FA 1090 3281202 YP_208734.1 CDS NGO1701 NC_002946.2 1658077 1658532 D Best Blastp Hit: gb|AAC98737.1| (AF052749) unknown [Pseudomonas putida]; COG1145 Ferredoxin 2; hypothetical protein 1658077..1658532 Neisseria gonorrhoeae FA 1090 3281188 YP_208735.1 CDS NGO1702 NC_002946.2 1658587 1659111 R Best Blastp Hit: pir||F81792 hypothetical protein NMA2195 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|6900420|emb|CAB72030.1| (AJ391261) hypothetical protein [Neisseria meningitidis] >gi|7380814|emb|CAB85406.1| (AL162758) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(1658587..1659111) Neisseria gonorrhoeae FA 1090 3281196 YP_208736.1 CDS NGO1703 NC_002946.2 1659056 1660018 D Best Blastp Hit: gb|AAC82509.1| (U65994) pilin gene inverting protein homolog PivNG [Neisseria gonorrhoeae]; invertase related gene 8; Irg8 1659056..1660018 Neisseria gonorrhoeae FA 1090 3282553 YP_208737.1 CDS NGO1704 NC_002946.2 1660138 1660335 R Best Blastp Hit: pir||F81792 hypothetical protein NMA2195 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|6900420|emb|CAB72030.1| (AJ391261) hypothetical protein [Neisseria meningitidis] >gi|7380814|emb|CAB85406.1| (AL162758) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(1660138..1660335) Neisseria gonorrhoeae FA 1090 3281224 YP_208738.1 CDS NGO1705 NC_002946.2 1660384 1660782 R Best Blastp Hit: gb|AAF40742.1| (AE002386) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7380815|emb|CAB85407.1| (AL162758) conserved hypothetical inner membrane protein [Neisseria meningitidis]; hypothetical protein complement(1660384..1660782) Neisseria gonorrhoeae FA 1090 3281173 YP_208739.1 CDS NGO1706 NC_002946.2 1660890 1661801 D Best Blastp Hit: gb|AAF40741.1| (AE002386) transcriptional regulator, [Neisseria meningitidis MC58]; COG0583 Transcriptional regulators, LysR family; LysR family transcriptional regulator 1660890..1661801 Neisseria gonorrhoeae FA 1090 3281159 YP_208740.1 CDS NGO1707 NC_002946.2 1661791 1663089 D Best Blastp Hit: emb|CAB85409.1| (AL162758) deoxyribodopyrimidine photolyase [Neisseria meningitidis]; COG0415 Deoxypyrimidine photolyase; deoxyribodopyrimidine photolyase 1661791..1663089 Neisseria gonorrhoeae FA 1090 3281164 YP_208741.1 CDS dinG NC_002946.2 1663270 1665420 D helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 1663270..1665420 Neisseria gonorrhoeae FA 1090 3281179 YP_208742.1 CDS NGO1709 NC_002946.2 1665456 1666070 D Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); hypothetical protein 1665456..1666070 Neisseria gonorrhoeae FA 1090 3281169 YP_208743.1 CDS NGO1710 NC_002946.2 1666206 1668074 R Best Blastp Hit: emb|CAB85413.1| (AL162758) inner membrane trans-acylase [Neisseria meningitidis]; COG1835 Predicted acyltransferases; trans-acylase complement(1666206..1668074) Neisseria gonorrhoeae FA 1090 3281153 YP_208744.1 CDS NGO1711 NC_002946.2 1668154 1669524 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1668154..1669524) Neisseria gonorrhoeae FA 1090 3281154 YP_208745.1 CDS NGO1712 NC_002946.2 1669596 1670228 R Best Blastp Hit: emb|CAB85415.1| (AL162758) hypothetical protein [Neisseria meningitidis]; COG1611 Predicted Rossmann fold nucleotide-binding; hypothetical protein complement(1669596..1670228) Neisseria gonorrhoeae FA 1090 3281343 YP_208746.1 CDS NGO1713 NC_002946.2 1670357 1672264 D Best Blastp Hit: emb|CAB85416.1| (AL162758) hypothetical protein [Neisseria meningitidis]; COG0557 Exoribonucleases; hypothetical protein 1670357..1672264 Neisseria gonorrhoeae FA 1090 3281396 YP_208747.1 CDS NGO1714 NC_002946.2 1672744 1673745 R Best Blastp Hit: >pir||B81216 peptidyl-prolyl cis-trans isomerase NMB0281 [imported] - Neisseria meningitidis (group B strain MD58) gb|AAF40735.1| (AE002385) peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis MC58]; COG0760 Parvulin-like peptidyl-prolyl isomerase; cis-trans isomerase complement(1672744..1673745) Neisseria gonorrhoeae FA 1090 3281149 YP_208748.1 CDS NGO1715 NC_002946.2 1673847 1676252 R Best Blastp Hit: emb|CAB85418.1| (AL162758) solvent tolerance protein [Neisseria meningitidis]; COG1452 Organic solvent tolerance protein OstA; OstA protein complement(1673847..1676252) Neisseria gonorrhoeae FA 1090 3281158 YP_208749.1 CDS NGO1716 NC_002946.2 1676322 1677326 D Best Blastp Hit: pir||C81794 hypothetical protein NMA2208 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380827|emb|CAB85419.1| (AL162758) hypothetical protein [Neisseria meningitidis]; hypothetical protein 1676322..1677326 Neisseria gonorrhoeae FA 1090 3281371 YP_208750.1 CDS NGO1717 NC_002946.2 1677383 1678087 R Best Blastp Hit: gb|AAF40732.1| (AE002384) thiol:disulfide interchange protein DsbA [Neisseria meningitidis MC58]; COG0526 Thiol-disulfide isomerase and thioredoxins; thiol:disulfide interchange protein complement(1677383..1678087) Neisseria gonorrhoeae FA 1090 3281356 YP_208751.1 CDS NGO1718 NC_002946.2 1678525 1680063 D Best Blastp Hit: pir||B81217 virulence factor MviN NMB0277 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225502|gb|AAF40731.1| (AE002384) virulence factor MviN [Neisseria meningitidis MC58]; COG0728 Uncharacterized membrane protein; hypothetical protein 1678525..1680063 Neisseria gonorrhoeae FA 1090 3281263 YP_208752.1 CDS NGO1719 NC_002946.2 1680196 1681155 D Best Blastp Hit: gb|AAF40730.1| (AE002384) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0429 Predicted hydrolase of the; hypothetical protein 1680196..1681155 Neisseria gonorrhoeae FA 1090 3281305 YP_208753.1 CDS NGO1720 NC_002946.2 1681152 1681262 R hypothetical protein complement(1681152..1681262) Neisseria gonorrhoeae FA 1090 3281168 YP_208754.1 CDS trpC NC_002946.2 1681206 1681988 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol phosphate synthase 1681206..1681988 Neisseria gonorrhoeae FA 1090 3281235 YP_208755.1 CDS NGO1722 NC_002946.2 1682051 1684354 D Best Blastp Hit: gb|AAD05424.1| (AF047374) RecQ [Neisseria gonorrhoeae]; COG0514 Superfamily II DNA helicases, RecQ family; RecQ protein; ATP-dependent DNA helicase 1682051..1684354 Neisseria gonorrhoeae FA 1090 3281296 YP_208756.1 CDS NGO1723 NC_002946.2 1684391 1685692 R Best Blastp Hit: emb|CAB85425.1| (AL162758) hypothetical protein [Neisseria meningitidis]; hypothetical protein complement(1684391..1685692) Neisseria gonorrhoeae FA 1090 3281319 YP_208757.1 CDS NGO1724 NC_002946.2 1686074 1686862 R Best Blastp Hit: gb|AAF40725.1| (AE002383) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1686074..1686862) Neisseria gonorrhoeae FA 1090 3281336 YP_208758.1 CDS NGO1725 NC_002946.2 1686859 1687635 R Best Blastp Hit: emb|CAB85427.1| (AL162758) hydrolase [Neisseria meningitidis]; COG0570 BioH, catalyzes some early step in biotin; bioH - biotin biosynthesis protein complement(1686859..1687635) Neisseria gonorrhoeae FA 1090 3281297 YP_208759.1 CDS NGO1726 NC_002946.2 1687607 1688332 D Best Blastp Hit: emb|CAB85428.1| (AL162758) hypothetical protein [Neisseria meningitidis]; COG1040 Predicted amidophosphoribosyl transferases; hypothetical protein 1687607..1688332 Neisseria gonorrhoeae FA 1090 3281250 YP_208760.1 CDS NGO1727 NC_002946.2 1688397 1688861 D Best Blastp Hit: gb|AAF40722.1| (AE002383) RNA methyltransferase, TrmH family [Neisseria meningitidis MC58]; COG0219 Predicted rRNA methylase (SpoU class); hypothetical protein 1688397..1688861 Neisseria gonorrhoeae FA 1090 3281271 YP_208761.1 CDS NGO1728 NC_002946.2 1688989 1689675 D Best Blastp Hit: gb|AAF40721.1| (AE002383) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0797 Lipoproteins; hypothetical protein 1688989..1689675 Neisseria gonorrhoeae FA 1090 3281107 YP_208762.1 CDS NGO1729 NC_002946.2 1689736 1690062 D Best Blastp Hit: pir||C81218 conserved hypothetical protein NMB0266 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225490|gb|AAF40720.1| (AE002383) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1689736..1690062 Neisseria gonorrhoeae FA 1090 3281258 YP_208763.1 CDS ruvA NC_002946.2 1690144 1690728 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1690144..1690728 Neisseria gonorrhoeae FA 1090 3281203 YP_208764.1 CDS NGO1731 NC_002946.2 1690728 1690865 D Best Blastp Hit: emb|CAB85433.1| (AL162758) hypothetical protein [Neisseria meningitidis]; hypothetical protein 1690728..1690865 Neisseria gonorrhoeae FA 1090 3281105 YP_208765.1 CDS NGO1732 NC_002946.2 1690892 1692748 D Best Blastp Hit: emb|CAB85434.1| (AL162758) ABC transporter [Neisseria meningitidis]; COG1132 ABC-type multidrug/protein/lipid; ABC transporter ATP-binding protein 1690892..1692748 Neisseria gonorrhoeae FA 1090 3281146 YP_208766.1 CDS NGO1733 NC_002946.2 1692753 1693676 D EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 1692753..1693676 Neisseria gonorrhoeae FA 1090 3281155 YP_208767.1 CDS NGO1734 NC_002946.2 1693789 1694013 D catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 1693789..1694013 Neisseria gonorrhoeae FA 1090 3281259 YP_208768.1 CDS NGO1735 NC_002946.2 1693997 1694893 D Best Blastp Hit: pir||E81796 geranyltranstransferase (EC 2.5.1.10) NMA2226 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380845|emb|CAB85437.1| (AL162758) geranyltranstransferase [Neisseria meningitidis]; COG0142 Geranylgeranyl pyrophosphate synthase; hypothetical protein 1693997..1694893 Neisseria gonorrhoeae FA 1090 3281265 YP_208769.1 CDS NGO1736 NC_002946.2 1695010 1695360 R Best Blastp Hit: pir||F81796 hypothetical inner membrane protein NMA2227 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380846|emb|CAB85438.1| (AL162758) hypothetical inner membrane protei [Neisseria meningitidis]; hypothetical protein complement(1695010..1695360) Neisseria gonorrhoeae FA 1090 3281274 YP_208770.1 CDS NGO1737 NC_002946.2 1695421 1696866 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N complement(1695421..1696866) Neisseria gonorrhoeae FA 1090 3281148 YP_208771.1 CDS NGO1738 NC_002946.2 1696876 1698372 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M complement(1696876..1698372) Neisseria gonorrhoeae FA 1090 3281183 YP_208772.1 CDS NGO1739 NC_002946.2 1698486 1699649 R Best Blastp Hit: pir||A71813 hypothetical protein jhp1392 - Helicobacter pylori (strain J99) >gi|4156012|gb|AAD06973.1| (AE001561) [Helicobacter pylori J99]; hypothetical protein complement(1698486..1699649) Neisseria gonorrhoeae FA 1090 3281176 YP_208773.1 CDS NGO1740 NC_002946.2 1699833 1701857 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L complement(1699833..1701857) Neisseria gonorrhoeae FA 1090 3281182 YP_208774.1 CDS NGO1741 NC_002946.2 1701860 1702165 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K complement(1701860..1702165) Neisseria gonorrhoeae FA 1090 3281171 YP_208775.1 CDS NGO1742 NC_002946.2 1702162 1702833 R Best Blastp Hit: gb|AAF40707.1| (AE002382) NADH dehydrogenase I, J subunit [Neisseria meningitidis MC58]; hypothetical protein complement(1702162..1702833) Neisseria gonorrhoeae FA 1090 3281102 YP_208776.1 CDS NGO1743 NC_002946.2 1702845 1703324 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(1702845..1703324) Neisseria gonorrhoeae FA 1090 3281187 YP_208777.1 CDS NGO1744 NC_002946.2 1703405 1704481 R Best Blastp Hit: pir||E81219 NADH dehydrogenase I, H chain NMB0250 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225473|gb|AAF40704.1| (AE002382) NADH dehydrogenase I, H subunit [Neisseria meningitidis MC58]; COG1005 NADH-ubiquinone oxidoreductase subunit 1; hypothetical protein complement(1703405..1704481) Neisseria gonorrhoeae FA 1090 3281416 YP_208778.1 CDS NGO1745 NC_002946.2 1704484 1706745 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G complement(1704484..1706745) Neisseria gonorrhoeae FA 1090 3281216 YP_208779.1 CDS NGO1746 NC_002946.2 1707458 1708759 R Best Blastp Hit: pir||D81222 NADH dehydrogenase I, F chain NMB0246 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225468|gb|AAF40700.1| (AE002381) NADH dehydrogenase I, F subunit [Neisseria meningitidis MC58]; COG1894 NADH-ubiquinone oxidoreductase, NADH-binding; hypothetical protein complement(1707458..1708759) Neisseria gonorrhoeae FA 1090 3281091 YP_208780.1 CDS NGO1747 NC_002946.2 1709149 1709622 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E complement(1709149..1709622) Neisseria gonorrhoeae FA 1090 3281407 YP_208781.1 CDS NGO1748 NC_002946.2 1709622 1710878 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D complement(1709622..1710878) Neisseria gonorrhoeae FA 1090 3281201 YP_208782.1 CDS NGO1749 NC_002946.2 1710868 1711461 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C complement(1710868..1711461) Neisseria gonorrhoeae FA 1090 3281195 YP_208783.1 CDS NGO1750 NC_002946.2 1711474 1711956 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(1711474..1711956) Neisseria gonorrhoeae FA 1090 3281198 YP_208784.1 CDS NGO1751 NC_002946.2 1711947 1712303 R Best Blastp Hit: pir||G81992 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain A NMA0019 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378797|emb|CAB83339.1| (AL162752) NADH dehydrogenase I chain A [Neisseria meningitidis]; COG0838 NADH-ubiquinone oxidoreductase subunit 3; hypothetical protein complement(1711947..1712303) Neisseria gonorrhoeae FA 1090 3281406 YP_208785.1 CDS NGO1752 NC_002946.2 1712796 1714283 R Best Blastp Hit: pir||H81992 probable integral membrane protein NMA0020 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378798|emb|CAB83340.1| (AL162752) integral membrane protein [Neisseria meningitidis]; COG0421 Spermidine synthase; hypothetical protein complement(1712796..1714283) Neisseria gonorrhoeae FA 1090 3281163 YP_208786.1 CDS NGO1753 NC_002946.2 1714270 1714890 R Best Blastp Hit: pir||E81221 probable integral membrane protein NMA0021 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225461|gb|AAF40693.1| (AE002381) hypothetical protein [Neisseria meningitidis MC58] >gi|7378799|emb|CAB83341.1| (AL162752) integral membrane protein [Neisseria meningitidis]; hypothetical protein complement(1714270..1714890) Neisseria gonorrhoeae FA 1090 3281423 YP_208787.1 CDS NGO1754 NC_002946.2 1715118 1715465 R MafI3; MafI protein complement(1715118..1715465) Neisseria gonorrhoeae FA 1090 3281411 YP_208788.1 CDS NGO1755 NC_002946.2 1715638 1715838 R Best Blastp Hit: emb|CAB83579.1| (AL162752) truncated pilin [Neisseria meningitidis]; hypothetical protein complement(1715638..1715838) Neisseria gonorrhoeae FA 1090 3281404 YP_208789.1 CDS NGO1756 NC_002946.2 1716172 1716486 R hypothetical protein complement(1716172..1716486) Neisseria gonorrhoeae FA 1090 3281377 YP_208790.1 CDS NGO1757 NC_002946.2 1716628 1718835 R Best Blastp Hit: pir||F81993 DNA helicase II (EC 3.6.1.-) NMA0027 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|6900436|emb|CAB72035.1| (AJ391262) DNA helicase II [Neisseria meningitidis] >gi|7378804|emb|CAB83346.1| (AL162752) DNA helicase II [Neisseria meningitidis]; COG0210 Superfamily I DNA and RNA helicases; hypothetical protein complement(1716628..1718835) Neisseria gonorrhoeae FA 1090 3281425 YP_208791.1 CDS NGO1758 NC_002946.2 1719259 1721949 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(1719259..1721949) Neisseria gonorrhoeae FA 1090 3281418 YP_208792.1 CDS NGO1759 NC_002946.2 1722143 1722478 R Best Blastp Hit: gb|AAF40679.1| (AE002380) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1722143..1722478) Neisseria gonorrhoeae FA 1090 3281092 YP_208793.1 CDS NGO1760 NC_002946.2 1722492 1722965 R Best Blastp Hit: pir||H81222 hypothetical protein NMB0222 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225445|gb|AAF40678.1| (AE002380) hypothetical protein [Neisseria meningitidis MC58] >gi|7378813|emb|CAB83355.1| (AL162752) hypothetical protein NMA0037 [Neisseria meningitidis]; hypothetical protein complement(1722492..1722965) Neisseria gonorrhoeae FA 1090 3282555 YP_208794.1 CDS NGO1761 NC_002946.2 1723162 1724169 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(1723162..1724169) Neisseria gonorrhoeae FA 1090 3281087 YP_208795.1 CDS acpP NC_002946.2 1724401 1724637 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1724401..1724637 Neisseria gonorrhoeae FA 1090 3281138 YP_208796.1 CDS NGO1763 NC_002946.2 1724794 1726041 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 1724794..1726041 Neisseria gonorrhoeae FA 1090 3281094 YP_208797.1 CDS NGO1765 NC_002946.2 1728025 1729155 D Best Blastp Hit: possibly phase variable - 10G residue homopolymer repeat in the coding sequence (ON); COG0438 Glycosyltransferases I; protein PglA; glycosyltransferase 1728025..1729155 Neisseria gonorrhoeae FA 1090 3281093 YP_208798.1 CDS NGO1767 NC_002946.2 1730757 1732271 D Best Blastp Hit: pir||D81224 catalase (EC 1.11.1.6) NMA0050 [similarity] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225438|gb|AAF40672.1| (AE002379) catalase [Neisseria meningitidis MC58] >gi|7378825|emb|CAB83367.1| (AL162752) catalase [Neisseria meningitidis]; COG0753 Catalase; protein KatA; catalase 1730757..1732271 Neisseria gonorrhoeae FA 1090 3282549 YP_208799.1 CDS NGO1768 NC_002946.2 1732787 1733353 D Best Blastp Hit: pir||C81224 conserved hypothetical protein NMB0215 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225437|gb|AAF40671.1| (AE002379) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1971 Predicted membrane protein; hypothetical protein 1732787..1733353 Neisseria gonorrhoeae FA 1090 3281166 YP_208800.1 CDS NGO1769 NC_002946.2 1733575 1734738 D Best Blastp Hit: pir||B70313 cytochrome-c peroxidase (EC 1.11.1.5) - Aquifex aeolicus >gi|2982865|gb|AAC06485.1| (AE000675) cytochrome c peroxidase [Aquifex aeolicus]; COG1858 Cytochrome c peroxidase; protein CcpR; cytochrome-c peroxidase 1733575..1734738 Neisseria gonorrhoeae FA 1090 3281141 YP_208801.1 CDS NGO1770 NC_002946.2 1735319 1737355 R Best Blastp Hit: pir||G81996 oligopeptidase A (EC 3.4.24.70) NMA0054 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378829|emb|CAB83371.1| (AL162752) oligopeptidase A [Neisseria meningitidis]; COG0339 Zn-dependent oligopeptidases; PrlC protein complement(1735319..1737355) Neisseria gonorrhoeae FA 1090 3281147 YP_208802.1 CDS NGO1771 NC_002946.2 1737443 1738435 R Best Blastp Hit: pir||E81225 hypothetical protein NMB0213 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225434|gb|AAF40669.1| (AE002378) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1737443..1738435) Neisseria gonorrhoeae FA 1090 3282530 YP_208803.1 CDS gyrB NC_002946.2 1738581 1740971 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 1738581..1740971 Neisseria gonorrhoeae FA 1090 3281137 YP_208804.1 CDS NGO1773 NC_002946.2 1741070 1742455 D Best Blastp Hit: pir||C81225 L-serine dehydratase NMB0211 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225432|gb|AAF40667.1| (AE002378) L-serine dehydratase [Neisseria meningitidis MC58]; COG1760 L-serine deaminase; hypothetical protein 1741070..1742455 Neisseria gonorrhoeae FA 1090 3281143 YP_208805.1 CDS NGO1774 NC_002946.2 1743699 1745651 R Best Blastp Hit: gb|AAF40666.1| (AE002378) glutathione-regulated potassium-efflux system protein [Neisseria meningitidis MC58]; COG0475 K efflux system, membrane domain; potassium-efflux system protein complement(1743699..1745651) Neisseria gonorrhoeae FA 1090 3281142 YP_208806.1 CDS NGO1775 NC_002946.2 1745797 1746636 D Best Blastp Hit: emb|CAB83377.1| (AL162752) ferredoxin [Neisseria meningitidis]; COG1145 Ferredoxin 2; ferredoxin 1745797..1746636 Neisseria gonorrhoeae FA 1090 3282533 YP_208807.1 CDS NGO1776 NC_002946.2 1746835 1747866 D catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 1746835..1747866 Neisseria gonorrhoeae FA 1090 3282461 YP_208808.1 CDS NGO1777 NC_002946.2 1747904 1748062 D Best Blastp Hit: gb|AAF42457.1| (AE002563) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1747904..1748062 Neisseria gonorrhoeae FA 1090 3282540 YP_208809.1 CDS aat NC_002946.2 1748121 1748846 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase complement(1748121..1748846) Neisseria gonorrhoeae FA 1090 3282505 YP_208810.1 CDS NGO1779 NC_002946.2 1748916 1749350 R Best Blastp Hit: sp|Q51008|FUR_NEIGO ferric uptake regulation protein (ferric uptake regulator) >gi|349012|gb|AAA72351.1| (L11361) [Neisseria gonorrheae fur gene homologue, complete cds.], gene product [Neisseria gonorrhoeae]; COG0735 Ferric uptake regulation protein; hypothetical protein complement(1748916..1749350) Neisseria gonorrhoeae FA 1090 3282476 YP_208811.1 CDS NGO1780 NC_002946.2 1749577 1749954 D Best Blastp Hit: pir||H81997 probable lipoprotein NMA0065 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378838|emb|CAB83381.1| (AL162752) lipoprotein [Neisseria meningitidis]; hypothetical protein 1749577..1749954 Neisseria gonorrhoeae FA 1090 3282539 YP_208812.1 CDS NGO1781 NC_002946.2 1749964 1750773 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1749964..1750773 Neisseria gonorrhoeae FA 1090 3282515 YP_208813.1 CDS lpxB NC_002946.2 1751413 1752585 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(1751413..1752585) Neisseria gonorrhoeae FA 1090 3282347 YP_208814.1 CDS NGO1783 NC_002946.2 1752736 1753728 R Best Blastp Hit: pir||E81998 pseudouridylate synthase (EC 4.2.1.70) C rRNA-specific NMA0070 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378843|emb|CAB83386.1| (AL162752) ribosomal large subunit pseudouridine synthase C [Neisseria meningitidis]; COG0564 Predicted pseudouridylate synthase 2; protein RluC complement(1752736..1753728) Neisseria gonorrhoeae FA 1090 3282524 YP_208815.1 CDS NGO1784 NC_002946.2 1753810 1754115 R Best Blastp Hit: gb|AAF40654.1| (AE002377) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1753810..1754115) Neisseria gonorrhoeae FA 1090 3282521 YP_208816.1 CDS NGO1785 NC_002946.2 1754221 1756980 D Best Blastp Hit: gb|AAF40653.1| (AE002377) ribonuclease E [Neisseria meningitidis MC58]; COG1530 Ribonucleases G and E; ribonuclease E 1754221..1756980 Neisseria gonorrhoeae FA 1090 3282472 YP_208817.1 CDS pdxA NC_002946.2 1757210 1758202 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(1757210..1758202) Neisseria gonorrhoeae FA 1090 3282475 YP_208818.1 CDS NGO1787 NC_002946.2 1758361 1759788 D Best Blastp Hit: pir||G81227 probable amino-acid transport protein NMA0073 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225414|gb|AAF40651.1| (AE002376) amino acid symporter, [Neisseria meningitidis MC58] >gi|7378846|emb|CAB83389.1| (AL162752) amino-acid transport protein [Neisseria meningitidis]; COG1115 Sodium-alanine symporters; amino-acid transport protein 1758361..1759788 Neisseria gonorrhoeae FA 1090 3282464 YP_208819.1 CDS NGO1788 NC_002946.2 1759970 1761856 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 1759970..1761856 Neisseria gonorrhoeae FA 1090 3282494 YP_208820.1 CDS rnhB NC_002946.2 1761924 1762508 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1761924..1762508 Neisseria gonorrhoeae FA 1090 3282466 YP_208821.1 CDS NGO1790 NC_002946.2 1763256 1764029 R Best Blastp Hit: pir||C81999 parA family protein NMA0076 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378849|emb|CAB83392.1| (AL162752) parA family protein [Neisseria meningitidis]; COG1192 ATPases involved in chromosome partitioning; parA family protein - ATPase complement(1763256..1764029) Neisseria gonorrhoeae FA 1090 3282470 YP_208822.1 CDS gidB NC_002946.2 1764129 1764752 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(1764129..1764752) Neisseria gonorrhoeae FA 1090 3282541 YP_208823.1 CDS NGO1792 NC_002946.2 1764847 1765422 R Best Blastp Hit: emb|CAB83394.1| (AL162752) integral membrane protein [Neisseria meningitidis]; hypothetical protein complement(1764847..1765422) Neisseria gonorrhoeae FA 1090 3282542 YP_208824.1 CDS NGO1793 NC_002946.2 1765476 1766705 D Best Blastp Hit: gb|AAF40645.1| (AE002376) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1765476..1766705 Neisseria gonorrhoeae FA 1090 3282535 YP_208825.1 CDS NGO1795 NC_002946.2 1767623 1768648 D Best Blastp Hit: pir||CTNHP2 site-specific DNA-methyltransferase (cytosine-specific) (EC 2.1.1.73) NgoPII - Neisseria gonorrhoeae >gi|44873|emb|CAA30038.1| (X06965) NgoPII methylase (AA 1-341) [Neisseria gonorrhoeae] >gi|44888|emb|CAA36888.1| (X52661) NgoPII restriction and modification [Neisseria gonorrhoeae] >gi|293960|gb|AAA17019.1| (L14564) cytosine methylase [Neisseria gonorrhoeae] >gi|227054|prf||1613419B NgoPII methylase [Neisseria gonorrhoeae]; COG0270 Site-specific DNA methylase dcm; site-specific DNA-methyltransferase M. NgoPII; DcmB 1767623..1768648 Neisseria gonorrhoeae FA 1090 3282409 YP_208826.1 CDS frr NC_002946.2 1768790 1769347 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1768790..1769347 Neisseria gonorrhoeae FA 1090 3282506 YP_208827.1 CDS NGO1797 NC_002946.2 1769403 1770149 D Best Blastp Hit: pir||C81229 undecaprenyl pyrophosphate synthetase NMB0186 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225405|gb|AAF40643.1| (AE002375) undecaprenyl pyrophosphate synthetase [Neisseria meningitidis MC58]; COG0020 Undecaprenyl pyrophosphate synthase; undecaprenyl diphosphate synthase 1769403..1770149 Neisseria gonorrhoeae FA 1090 3282548 YP_208828.1 CDS NGO1798 NC_002946.2 1770152 1770949 D Best Blastp Hit: pir||A82000 phosphatidate cytidylyltransferase (EC 2.7.7.41) NMA0082 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378855|emb|CAB83398.1| (AL162752) phosphatidate cytidylyltransferase [Neisseria meningitidis]; COG0575 CDP-diglyceride synthetase; phosphatidate cytidylyltransferase 1770152..1770949 Neisseria gonorrhoeae FA 1090 3282424 YP_208829.1 CDS NGO1799 NC_002946.2 1771005 1772189 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1771005..1772189 Neisseria gonorrhoeae FA 1090 3282430 YP_208830.1 CDS NGO1800 NC_002946.2 1772224 1773564 D Best Blastp Hit: emb|CAB83400.1| (AL162752) integral membrane protein [Neisseria meningitidis]; COG0750 Predicted membrane-associated Zn-dependent; hypothetical protein 1772224..1773564 Neisseria gonorrhoeae FA 1090 3282359 YP_208831.1 CDS NGO1801 NC_002946.2 1773621 1775999 D Best Blastp Hit: gb|AAC17600.1| (U81959) outer membrane protein [Neisseria gonorrhoeae]; COG0729 Predicted outer membrane protein; hypothetical protein 1773621..1775999 Neisseria gonorrhoeae FA 1090 3282404 YP_208832.1 CDS NGO1802 NC_002946.2 1776008 1776565 D Best Blastp Hit: gb|AAF40638.1| (AE002375) outer membrane protein OmpH, [Neisseria meningitidis MC58]; hypothetical protein 1776008..1776565 Neisseria gonorrhoeae FA 1090 3282304 YP_208833.1 CDS lpxD NC_002946.2 1776598 1777641 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1776598..1777641 Neisseria gonorrhoeae FA 1090 3282536 YP_208834.1 CDS fabZ NC_002946.2 1777677 1778126 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1777677..1778126 Neisseria gonorrhoeae FA 1090 3282334 YP_208835.1 CDS NGO1805 NC_002946.2 1778333 1779019 D Best Blastp Hit: pir||H82000 hypothetical protein NMA0089 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378862|emb|CAB83405.1| (AL162752) hypothetical protein NMA0089 [Neisseria meningitidis]; hypothetical protein 1778333..1779019 Neisseria gonorrhoeae FA 1090 3282294 YP_208836.1 CDS NGO1806 NC_002946.2 1779062 1779838 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 1779062..1779838 Neisseria gonorrhoeae FA 1090 3282363 YP_208837.1 CDS NGO1807 NC_002946.2 1780301 1781692 D Best Blastp Hit: pir||B81228 sodium/alanine symporter, probable NMB0177 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225396|gb|AAF40634.1| (AE002375) sodium/alanine symporter, [Neisseria meningitidis MC58]; COG1115 Sodium-alanine symporters; amino-acid transporter 1780301..1781692 Neisseria gonorrhoeae FA 1090 3282388 YP_208838.1 CDS NGO1808 NC_002946.2 1781771 1783030 D catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit 1781771..1783030 Neisseria gonorrhoeae FA 1090 3282307 YP_208839.1 CDS valS NC_002946.2 1783135 1785972 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1783135..1785972 Neisseria gonorrhoeae FA 1090 3282861 YP_208840.1 CDS NGO1810 NC_002946.2 1786049 1786513 D hypothetical protein 1786049..1786513 Neisseria gonorrhoeae FA 1090 3282299 YP_208841.1 CDS truA NC_002946.2 1787384 1788181 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1787384..1788181 Neisseria gonorrhoeae FA 1090 3282256 YP_208842.1 CDS NGO1812 NC_002946.2 1788698 1789744 D Best Blastp Hit: gb|AAC79472.1| (AF090803) outer membrane protein I precursor [Neisseria gonorrhoeae]; por; major outer membrane protein porin P.IB 1788698..1789744 Neisseria gonorrhoeae FA 1090 3282133 YP_208843.1 CDS NGO1813 NC_002946.2 1790265 1791185 R Best Blastp Hit: pir||H82001 probable hydrogen peroxide-inducible genes activator NMA0098 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378870|emb|CAB83413.1| (AL162752) hydrogen peroxide-inducible genes activator [Neisseria meningitidis]; COG0583 Transcriptional regulators, LysR family; LysR family transcriptional regulator complement(1790265..1791185) Neisseria gonorrhoeae FA 1090 3282273 YP_208844.1 CDS NGO1814 NC_002946.2 1791189 1791452 R works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE complement(1791189..1791452) Neisseria gonorrhoeae FA 1090 3282300 YP_208845.1 CDS minC NC_002946.2 1792300 1793013 R blocks the formation of polar Z-ring septums; septum formation inhibitor complement(1792300..1793013) Neisseria gonorrhoeae FA 1090 3282164 YP_208846.1 CDS rplQ NC_002946.2 1793160 1793528 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(1793160..1793528) Neisseria gonorrhoeae FA 1090 3282135 YP_208847.1 CDS NGO1818 NC_002946.2 1793552 1794538 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(1793552..1794538) Neisseria gonorrhoeae FA 1090 3282252 YP_208848.1 CDS rpsD NC_002946.2 1794564 1795184 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(1794564..1795184) Neisseria gonorrhoeae FA 1090 3282442 YP_208849.1 CDS NGO1820 NC_002946.2 1795204 1795599 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(1795204..1795599) Neisseria gonorrhoeae FA 1090 3282289 YP_208850.1 CDS rpsM NC_002946.2 1795619 1795981 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(1795619..1795981) Neisseria gonorrhoeae FA 1090 3282445 YP_208851.1 CDS infA NC_002946.2 1796181 1796399 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(1796181..1796399) Neisseria gonorrhoeae FA 1090 3282427 YP_208852.1 CDS secY NC_002946.2 1796404 1797714 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(1796404..1797714) Neisseria gonorrhoeae FA 1090 3282367 YP_208853.1 CDS rplO NC_002946.2 1797726 1798160 R late assembly protein; 50S ribosomal protein L15 complement(1797726..1798160) Neisseria gonorrhoeae FA 1090 3282419 YP_208854.1 CDS rpmD NC_002946.2 1798162 1798347 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(1798162..1798347) Neisseria gonorrhoeae FA 1090 3282396 YP_208855.1 CDS rpsE NC_002946.2 1798340 1798858 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(1798340..1798858) Neisseria gonorrhoeae FA 1090 3282448 YP_208856.1 CDS rplR NC_002946.2 1798877 1799230 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(1798877..1799230) Neisseria gonorrhoeae FA 1090 3282166 YP_208857.1 CDS rplF NC_002946.2 1799244 1799777 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(1799244..1799777) Neisseria gonorrhoeae FA 1090 3282450 YP_208858.1 CDS rpsH NC_002946.2 1799791 1800183 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(1799791..1800183) Neisseria gonorrhoeae FA 1090 3282449 YP_208859.1 CDS rpsN NC_002946.2 1800199 1800504 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(1800199..1800504) Neisseria gonorrhoeae FA 1090 3282440 YP_208860.1 CDS rplE NC_002946.2 1800507 1801046 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(1800507..1801046) Neisseria gonorrhoeae FA 1090 3282434 YP_208861.1 CDS rplX NC_002946.2 1801056 1801379 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(1801056..1801379) Neisseria gonorrhoeae FA 1090 3282433 YP_208862.1 CDS rplN NC_002946.2 1801391 1801759 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(1801391..1801759) Neisseria gonorrhoeae FA 1090 3282393 YP_208863.1 CDS rpsQ NC_002946.2 1801981 1802244 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(1801981..1802244) Neisseria gonorrhoeae FA 1090 3282162 YP_208864.1 CDS NGO1831 NC_002946.2 1802244 1802435 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(1802244..1802435) Neisseria gonorrhoeae FA 1090 3282258 YP_208865.1 CDS rplP NC_002946.2 1802435 1802851 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(1802435..1802851) Neisseria gonorrhoeae FA 1090 3282385 YP_208866.1 CDS rpsC NC_002946.2 1802835 1803527 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(1802835..1803527) Neisseria gonorrhoeae FA 1090 3282435 YP_208867.1 CDS rplV NC_002946.2 1803537 1803866 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(1803537..1803866) Neisseria gonorrhoeae FA 1090 3282436 YP_208868.1 CDS rpsS NC_002946.2 1803875 1804153 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(1803875..1804153) Neisseria gonorrhoeae FA 1090 3282438 YP_208869.1 CDS rplB NC_002946.2 1804159 1804992 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(1804159..1804992) Neisseria gonorrhoeae FA 1090 3282423 YP_208870.1 CDS rplW NC_002946.2 1804998 1805318 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(1804998..1805318) Neisseria gonorrhoeae FA 1090 3282429 YP_208871.1 CDS rplD NC_002946.2 1805309 1805929 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(1805309..1805929) Neisseria gonorrhoeae FA 1090 3282415 YP_208872.1 CDS rplC NC_002946.2 1805929 1806573 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(1805929..1806573) Neisseria gonorrhoeae FA 1090 3282421 YP_208873.1 CDS NGO1839 NC_002946.2 1806791 1806982 R Best Blastp Hit: emb|CAB83446.1| (AL162752) hypothetical protein NMA0132 [Neisseria meningitidis]; hypothetical protein complement(1806791..1806982) Neisseria gonorrhoeae FA 1090 3282352 YP_208874.1 CDS rpsJ NC_002946.2 1807359 1807670 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(1807359..1807670) Neisseria gonorrhoeae FA 1090 3282416 YP_208875.1 CDS NGO1842 NC_002946.2 1807688 1808872 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(1807688..1808872) Neisseria gonorrhoeae FA 1090 3282355 YP_208876.1 CDS NGO1843 NC_002946.2 1808960 1811065 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(1808960..1811065) Neisseria gonorrhoeae FA 1090 3282145 YP_208877.1 CDS NGO1844 NC_002946.2 1811084 1811554 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(1811084..1811554) Neisseria gonorrhoeae FA 1090 3282420 YP_208878.1 CDS rpsL NC_002946.2 1811672 1812043 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(1811672..1812043) Neisseria gonorrhoeae FA 1090 3282376 YP_208879.1 CDS NGO1846 NC_002946.2 1812222 1812371 R Best Blastp Hit: emb|CAB83453.1| (AL162752) hypothetical protein NMA0138 [Neisseria meningitidis]; hypothetical protein complement(1812222..1812371) Neisseria gonorrhoeae FA 1090 3282414 YP_208880.1 CDS NGO1847 NC_002946.2 1812378 1813307 R Best Blastp Hit: gb|AAF41823.1| (AE002496) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1812378..1813307) Neisseria gonorrhoeae FA 1090 3282389 YP_208881.1 CDS NGO1848 NC_002946.2 1813279 1813521 R Best Blastp Hit: gb|AAF40593.1| (AE002372) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1813279..1813521) Neisseria gonorrhoeae FA 1090 3282422 YP_208882.1 CDS NGO1849 NC_002946.2 1813761 1814822 R Best Blastp Hit: possibly phase variable - 8G residue homopolymer repeat in the coding sequence (ON); hypothetical protein complement(1813761..1814822) Neisseria gonorrhoeae FA 1090 3282402 YP_208883.1 CDS NGO1850 NC_002946.2 1815110 1819285 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(1815110..1819285) Neisseria gonorrhoeae FA 1090 3282397 YP_208884.1 CDS rpoB NC_002946.2 1819438 1823616 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(1819438..1823616) Neisseria gonorrhoeae FA 1090 3282372 YP_208885.1 CDS rplL NC_002946.2 1823807 1824178 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(1823807..1824178) Neisseria gonorrhoeae FA 1090 3282399 YP_208886.1 CDS rplJ NC_002946.2 1824236 1824736 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(1824236..1824736) Neisseria gonorrhoeae FA 1090 3282383 YP_208887.1 CDS rplA NC_002946.2 1824964 1825659 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(1824964..1825659) Neisseria gonorrhoeae FA 1090 3282369 YP_208888.1 CDS rplK NC_002946.2 1825659 1826093 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(1825659..1826093) Neisseria gonorrhoeae FA 1090 3282315 YP_208889.1 CDS nusG NC_002946.2 1826194 1826730 R Modulates Rho-dependent transcription termination; transcription antitermination protein NusG complement(1826194..1826730) Neisseria gonorrhoeae FA 1090 3282366 YP_208890.1 CDS secE NC_002946.2 1826732 1827010 R forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(1826732..1827010) Neisseria gonorrhoeae FA 1090 3282374 YP_208891.1 CDS NGO1858 NC_002946.2 1827207 1828391 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(1827207..1828391) Neisseria gonorrhoeae FA 1090 3282353 YP_208892.1 CDS NGO1859 NC_002946.2 1828808 1829059 R Best Blastp Hit: pir||H81234 ferredoxin, 4Fe-4S bacterial type NMB0123 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225340|gb|AAF40582.1| (AE002371) ferredoxin, 4Fe-4S bacterial type [Neisseria meningitidis MC58]; COG1145 Ferredoxin 2; ferredoxin complement(1828808..1829059) Neisseria gonorrhoeae FA 1090 3282322 YP_208893.1 CDS NGO1860 NC_002946.2 1829182 1829751 R Best Blastp Hit: emb|CAB83466.1| (AL162752) possible DNA methylase [Neisseria meningitidis]; COG0742 N6-adenine-specific methylase; DNA methylase complement(1829182..1829751) Neisseria gonorrhoeae FA 1090 3282354 YP_208894.1 CDS NGO1861 NC_002946.2 1829854 1830192 R Best Blastp Hit: pir||F82008 hypothetical protein NMA0153 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378924|emb|CAB83467.1| (AL162752) hypothetical protein NMA0153 [Neisseria meningitidis]; hypothetical protein complement(1829854..1830192) Neisseria gonorrhoeae FA 1090 3282338 YP_208895.1 CDS NGO1863 NC_002946.2 1832027 1834333 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining; maintains net negative superhelicity; DNA topoisomerase I complement(1832027..1834333) Neisseria gonorrhoeae FA 1090 3282381 YP_208896.1 CDS NGO1864 NC_002946.2 1834411 1834872 R Best Blastp Hit: gb|AAF40576.1| (AE002370) smg protein, [Neisseria meningitidis MC58] >gi|7378928|emb|CAB83471.1| (AL162752) hypothetical protein NMA0157 [Neisseria meningitidis]; hypothetical protein complement(1834411..1834872) Neisseria gonorrhoeae FA 1090 3282390 YP_208897.1 CDS NGO1865 NC_002946.2 1834898 1836085 R Best Blastp Hit: pir||C82009 DprA homolog NMA0158 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378929|emb|CAB83472.1| (AL162752) DprA homolog [Neisseria meningitidis]; COG0758 protein involved in DNA uptake; hypothetical protein complement(1834898..1836085) Neisseria gonorrhoeae FA 1090 3282392 YP_208898.1 CDS NGO1866 NC_002946.2 1836176 1837453 R Best Blastp Hit: gb|AAF40574.1| (AE002370) nitrogen assimilation regulatory protein NtrX [Neisseria meningitidis MC58]; COG2204 AAA superfamily ATPases with N-terminal; two-component system transcriptional response regulator complement(1836176..1837453) Neisseria gonorrhoeae FA 1090 3282368 YP_208899.1 CDS NGO1867 NC_002946.2 1837446 1839566 R Best Blastp Hit: emb|CAB83474.1| (AL162752) two-component sensor [Neisseria meningitidis]; COG0642 Sensory transduction histidine kinases; two-component system sensor kinase complement(1837446..1839566) Neisseria gonorrhoeae FA 1090 3282362 YP_208900.1 CDS NGO1868 NC_002946.2 1839566 1840165 R Best Blastp Hit: pir||F82009 hypothetical protein NMA0161 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378932|emb|CAB83475.1| (AL162752) hypothetical protein NMA0161 [Neisseria meningitidis]; hypothetical protein complement(1839566..1840165) Neisseria gonorrhoeae FA 1090 3282358 YP_208901.1 CDS NGO1869 NC_002946.2 1840131 1841390 R Best Blastp Hit: emb|CAB83476.1| (AL162752) SUN homolog [Neisseria meningitidis]; COG0144 Predicted rRNA methylase; 16S RNA methyltransferase complement(1840131..1841390) Neisseria gonorrhoeae FA 1090 3282371 YP_208902.1 CDS NGO1870 NC_002946.2 1841469 1842395 R Best Blastp Hit: pir||F81238 methionyl-tRNA formyltransferase NMB0111 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225326|gb|AAF40570.1| (AE002369) methionyl-tRNA formyltransferase [Neisseria meningitidis MC58]; COG0223 Methionyl-tRNA formyltransferase; hypothetical protein complement(1841469..1842395) Neisseria gonorrhoeae FA 1090 3282345 YP_208903.1 CDS def NC_002946.2 1842483 1842986 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(1842483..1842986) Neisseria gonorrhoeae FA 1090 3282344 YP_208904.1 CDS NGO1872 NC_002946.2 1843059 1843256 R hypothetical protein complement(1843059..1843256) Neisseria gonorrhoeae FA 1090 3282351 YP_208905.1 CDS NGO1873 NC_002946.2 1843284 1844621 D Best Blastp Hit: pir||D81238 hypothetical protein NMB0109 - Neisseria meningitidis (group B strain MD58) >gi|7225324|gb|AAF40568.1| (AE002369) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1652 Uncharacterized BCR; hypothetical protein 1843284..1844621 Neisseria gonorrhoeae FA 1090 3282342 YP_208906.1 CDS NGO1874 NC_002946.2 1844694 1844858 D Best Blastp Hit: gb|AAA96487.1| (L36381) [Neisseria gonorrhoeae]; hypothetical protein 1844694..1844858 Neisseria gonorrhoeae FA 1090 3282319 YP_208907.1 CDS NGO1875 NC_002946.2 1845042 1845692 R Best Blastp Hit: pir||C82010 probable integral membrane protein NMA0166 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378937|emb|CAB83480.1| (AL162752) integral membrane protein [Neisseria meningitidis]; hypothetical protein complement(1845042..1845692) Neisseria gonorrhoeae FA 1090 3282260 YP_208908.1 CDS NGO1876 NC_002946.2 1845754 1846212 R involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase complement(1845754..1846212) Neisseria gonorrhoeae FA 1090 3282329 YP_208909.1 CDS pyrB NC_002946.2 1846222 1847142 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase complement(1846222..1847142) Neisseria gonorrhoeae FA 1090 3282349 YP_208910.1 CDS NGO1878 NC_002946.2 1847378 1848220 D Best Blastp Hit: pir||F82010 hypothetical protein NMA0169 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378940|emb|CAB83483.1| (AL162752) hypothetical protein NMA0169 [Neisseria meningitidis]; COG0454 Predicted acetyltransferases; hypothetical protein 1847378..1848220 Neisseria gonorrhoeae FA 1090 3282333 YP_208911.1 CDS NGO18781 NC_002946.2 1848738 1848974 D Best Blastp Hit: possibly phase variable - 8T residue homopolymer repeat in the coding sequence (ON); hypothetical protein 1848738..1848974 Neisseria gonorrhoeae FA 1090 3282328 YP_208912.1 CDS NGO1879 NC_002946.2 1849022 1849612 D Best Blastp Hit: gb|AAF40562.1| (AE002369) bacteriocin resistance protein, [Neisseria meningitidis MC58] >gi|7378945|emb|CAB83488.1| (AL162752) hypothetical protein NMA0173 [Neisseria meningitidis]; COG1101 ATPase components of various transport; hypothetical protein 1849022..1849612 Neisseria gonorrhoeae FA 1090 3282326 YP_208913.1 CDS NGO1880 NC_002946.2 1849888 1850439 R Best Blastp Hit: pir||D82011 probable integral membrane protein NMA0174 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378946|emb|CAB83489.1| (AL162752) integral membrane protein [Neisseria meningitidis]; hypothetical protein complement(1849888..1850439) Neisseria gonorrhoeae FA 1090 3282356 YP_208914.1 CDS NGO1881 NC_002946.2 1851528 1853000 D Best Blastp Hit: pir||B81239 pyruvate kinase II NMB0089 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225307|gb|AAF40552.1| (AE002368) pyruvate kinase II [Neisseria meningitidis MC58]; COG0469 Pyruvate kinase; PykA 1851528..1853000 Neisseria gonorrhoeae FA 1090 3282312 YP_208915.1 CDS NGO1886 NC_002946.2 1854669 1855091 R Best Blastp Hit: emb|CAB83494.1| (AL162752) hypothetical protein NMA0179 [Neisseria meningitidis]; hypothetical protein complement(1854669..1855091) Neisseria gonorrhoeae FA 1090 3282330 YP_208916.1 CDS NGO1887 NC_002946.2 1855269 1855418 R Best Blastp Hit: pir||G81075 hypothetical protein NMB1507 [imported] - Neisseria meningitidis (group B strain MD58) >gi|4582968|gb|AAD24874.1|AF073777_2 (AF073777) unknown [Neisseria meningitidis] >gi|7226750|gb|AAF41863.1| (AE002500) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1855269..1855418) Neisseria gonorrhoeae FA 1090 3282332 YP_208917.1 CDS NGO1888 NC_002946.2 1855436 1855633 R Best Blastp Hit: gb|AAF40550.1| (AE002368) hypothetical protein [Neisseria meningitidis MC58] >gi|7378953|emb|CAB83496.1| (AL162752) hypothetical protein NMA0181 [Neisseria meningitidis]; hypothetical protein complement(1855436..1855633) Neisseria gonorrhoeae FA 1090 3282325 YP_208918.1 CDS NGO1889 NC_002946.2 1855643 1856659 R Best Blastp Hit: pir||G81238 hypothetical protein NMB0086 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225304|gb|AAF40549.1| (AE002368) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1855643..1856659) Neisseria gonorrhoeae FA 1090 3282301 YP_208919.1 CDS NGO1890 NC_002946.2 1856758 1857972 R Best Blastp Hit: pir||F81240 sodium/glutamate symporter NMB0085 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225302|gb|AAF40548.1| (AE002367) sodium/glutamate symporter [Neisseria meningitidis MC58]; COG0786 Glutamate permease; protein GltS; glutamate permease complement(1856758..1857972) Neisseria gonorrhoeae FA 1090 3282270 YP_208920.1 CDS NGO1891 NC_002946.2 1858225 1858506 R Best Blastp Hit: gb|AAC45837.1| (AF001598) similar to Bordetella pertussis toxin accessory protein encoded by GenBank Accession Number X95386 [Neisseria gonorrhoeae]; COG2183 Predicted RNA binding protein, contains S1; hypothetical protein complement(1858225..1858506) Neisseria gonorrhoeae FA 1090 3282295 YP_208921.1 CDS NGO1893 NC_002946.2 1859711 1860718 R Best Blastp Hit: gb|AAC45839.1| (AF001598) N6-methyladenine methyltransferase [Neisseria gonorrhoeae]; protein DamH; N6-methyladenine methyltransferase complement(1859711..1860718) Neisseria gonorrhoeae FA 1090 3282158 YP_208922.1 CDS NGO1894 NC_002946.2 1860711 1861712 R Best Blastp Hit: gb|AAC45838.1| (AF001598) 5-methylcytosine methyltransferase [Neisseria gonorrhoeae]; COG0270 Site-specific DNA methylase dcm; 5-methylcytosine methyltransferase complement(1860711..1861712) Neisseria gonorrhoeae FA 1090 3282284 YP_208923.1 CDS NGO1895 NC_002946.2 1861743 1864016 R Best Blastp Hit: sp|P57072|YHGF_NEIMA hypothetical protein NMA0194 >gi|11278680|pir||E82013 probable transcription accessory protein NMA0194 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378963|emb|CAB83508.1| (AL162752) transcriptional accessory protein [Neisseria meningitidis]; COG2183 Predicted RNA binding protein, contains S1; hypothetical protein complement(1861743..1864016) Neisseria gonorrhoeae FA 1090 3282286 YP_208924.1 CDS NGO1896 NC_002946.2 1864135 1865151 D Best Blastp Hit: sp|Q05026|GALE_NEIGO UDP-glucose 4-epimerase (galactowaldenase) (UDP-galactose 4-epimerase) >gi|486715|pir||S34984 UDPglucose 4-epimerase (EC 5.1.3.2) - Neisseria gonorrhoeae >gi|1051296|emb|CAA79721.1| (Z21508) UDP-glucose 4-epimerase [Neisseria gonorrhoeae]; COG1087 UDP-glucose 4-epimerase; hypothetical protein 1864135..1865151 Neisseria gonorrhoeae FA 1090 3282314 YP_208925.1 CDS NGO1897 NC_002946.2 1865152 1866192 D Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); COG1088 dTDP-D-glucose 4,6-dehydratase; hypothetical protein 1865152..1866192 Neisseria gonorrhoeae FA 1090 3282303 YP_208926.1 CDS NGO1898 NC_002946.2 1866297 1867163 D Best Blastp Hit: sp|P37762|RFBA_NEIGO glucose-1-phosphate thymidylyltransferase (DTDP-glucose synthase) (DTDP-glucose pyrophosphorylase) >gi|628591|pir||S47046 glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) - Neisseria gonorrhoeae >gi|520897|emb|CAA83653.1| (Z32742) Glucose-1-phosphate thymidylyltransferase [Neisseria gonorrhoeae] >gi|1333794|emb|CAA79719.1| (Z21508) glucose-1-phosphate thymid transferase [Neisseria gonorrhoeae]; COG1209 dTDP-glucose pyrophosphorylase; glucose-1-phosphate thymidylyltransferase 1866297..1867163 Neisseria gonorrhoeae FA 1090 3282292 YP_208927.1 CDS NGO1900 NC_002946.2 1867902 1869920 R Best Blastp Hit: pir||B82015 probable integral membrane protein NMA0207 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378976|emb|CAB83521.1| (AL162752) integral membrane protein [Neisseria meningitidis]; COG1297 Uncharacterized membrane protein; hypothetical protein complement(1867902..1869920) Neisseria gonorrhoeae FA 1090 3282305 YP_208928.1 CDS NGO1901 NC_002946.2 1870115 1871236 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ complement(1870115..1871236) Neisseria gonorrhoeae FA 1090 3282302 YP_208929.1 CDS NGO1902 NC_002946.2 1872224 1872517 R COG1555 DNA uptake protein ComEA and related; DNA-binding competence protein 4; ComE4 complement(1872224..1872517) Neisseria gonorrhoeae FA 1090 3282296 YP_208930.1 CDS NGO1904 NC_002946.2 1878578 1878994 R Best Blastp Hit: gb|AAF40525.1| (AE002364) DnaK suppressor protein [Neisseria meningitidis MC58]; COG1734 DnaK suppressor protein DskA; dosage-dependent DnaK suppressor protein; DskA protein complement(1878578..1878994) Neisseria gonorrhoeae FA 1090 3282281 YP_208931.1 CDS NGO1905 NC_002946.2 1879145 1879936 R Best Blastp Hit: pir||H82015 probable pyrroline-5-carboxylate reductase (EC 1.5.1.2) NMA0215 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378982|emb|CAB83527.1| (AL162752) pyrroline-5-carboxylate reductase [Neisseria meningitidis]; COG0345 Pyrroline-5-carboxylate reductase; pyrroline-5-carboxylate reductase complement(1879145..1879936) Neisseria gonorrhoeae FA 1090 3282276 YP_208932.1 CDS NGO1906 NC_002946.2 1879985 1880392 R Best Blastp Hit: pir||A82016 probable lipoprotein NMA0216 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378983|emb|CAB83528.1| (AL162752) lipoprotein [Neisseria meningitidis]; hypothetical protein complement(1879985..1880392) Neisseria gonorrhoeae FA 1090 3282272 YP_208933.1 CDS NGO1907 NC_002946.2 1880392 1881078 R Best Blastp Hit: pir||C81243 conserved hypothetical protein NMB0053 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225273|gb|AAF40522.1| (AE002364) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0325 Predicted enzyme with a TIM-barrel fold; hypothetical protein complement(1880392..1881078) Neisseria gonorrhoeae FA 1090 3282293 YP_208934.1 CDS NGO1908 NC_002946.2 1881198 1882241 D Best Blastp Hit: gb|AAB30824.1| (S72391) PilT=ATP binding casette protein homolog [Neisseria gonorrhoeae, MS11, Peptide, 347 aa]; COG0630 Predicted ATPases involved in pili; twitching motility/pilus retraction protein 1881198..1882241 Neisseria gonorrhoeae FA 1090 3282267 YP_208935.1 CDS NGO1909 NC_002946.2 1882405 1883631 D Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); COG0630 Predicted ATPases involved in pili; twitching motility - like protein 1882405..1883631 Neisseria gonorrhoeae FA 1090 3282264 YP_208936.1 CDS NGO1910 NC_002946.2 1883748 1885898 D Best Blastp Hit: pir||H81242 conserved hypothetical protein NMB0050 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225270|gb|AAF40519.1| (AE002364) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1289 Uncharacterized membrane protein, YhfK; hypothetical protein 1883748..1885898 Neisseria gonorrhoeae FA 1090 3282136 YP_208937.1 CDS NGO1911 NC_002946.2 1886380 1886664 R Best Blastp Hit: emb|CAA05407.1| (AJ002423) hypothetical protein [Neisseria gonorrhoeae]; hypothetical protein complement(1886380..1886664) Neisseria gonorrhoeae FA 1090 3282262 YP_208938.1 CDS NGO1913 NC_002946.2 1891120 1891512 D Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON); hypothetical protein 1891120..1891512 Neisseria gonorrhoeae FA 1090 3282255 YP_208939.1 CDS NGO1914 NC_002946.2 1891592 1893040 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 1891592..1893040 Neisseria gonorrhoeae FA 1090 3282280 YP_208940.1 CDS NGO1915 NC_002946.2 1893103 1894374 D catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 1893103..1894374 Neisseria gonorrhoeae FA 1090 3282860 YP_208941.1 CDS NGO1916 NC_002946.2 1894415 1894864 D Best Blastp Hit: pir||C81248 conserved hypothetical protein NMB0013 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225238|gb|AAF40492.1| (AE002359) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1894415..1894864 Neisseria gonorrhoeae FA 1090 3282856 YP_208942.1 CDS NGO1917 NC_002946.2 1894897 1895871 D Best Blastp Hit: possibly phase variable - 8T residue homopolymer repeat in the coding sequence (ON); COG0861 Membrane protein TerC, possibly involved in; hypothetical protein 1894897..1895871 Neisseria gonorrhoeae FA 1090 3282859 YP_208943.1 CDS NGO1918 NC_002946.2 1896236 1897489 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1896236..1897489 Neisseria gonorrhoeae FA 1090 3282851 YP_208944.1 CDS pgk NC_002946.2 1897570 1898763 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1897570..1898763 Neisseria gonorrhoeae FA 1090 3282854 YP_208945.1 CDS NGO1920 NC_002946.2 1898815 1899063 R Best Blastp Hit: emb|CAB83564.1| (AL162752) hypothetical protein NMA0256 [Neisseria meningitidis]; COG0271 Stress-induced morphogen BolA (activity; hypothetical protein complement(1898815..1899063) Neisseria gonorrhoeae FA 1090 3282853 YP_208946.1 CDS NGO1921 NC_002946.2 1899156 1900073 R Best Blastp Hit: sp|P95357|FTSX_NEIGO cell division protein FtsX homolog >gi|1684782|gb|AAB36525.1| (U76418) FtsX-like protein [Neisseria gonorrhoeae]; COG2177 Cell division protein FtsX; hypothetical protein complement(1899156..1900073) Neisseria gonorrhoeae FA 1090 3282849 YP_208947.1 CDS NGO1922 NC_002946.2 1900070 1900720 R Best Blastp Hit: pir||E81247 cell division ATP-binding protein FtsE NMB0007 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225232|gb|AAF40486.1| (AE002359) cell division ATP-binding protein FtsE [Neisseria meningitidis MC58]; COG1135 Uncharacterized ABC-type transport system; hypothetical protein complement(1900070..1900720) Neisseria gonorrhoeae FA 1090 3282858 YP_208948.1 CDS NGO1923 NC_002946.2 1900914 1901396 R Best Blastp Hit: gb|AAB36523.1| (U76418) thioredoxin-like protein [Neisseria gonorrhoeae]; COG0526 Thiol-disulfide isomerase and thioredoxins; thioredoxin complement(1900914..1901396) Neisseria gonorrhoeae FA 1090 3282855 YP_208949.1 CDS NGO1924 NC_002946.2 1901520 1901873 D Best Blastp Hit: pir||C81247 arsenate reductase NMB0005 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225230|gb|AAF40484.1| (AE002359) arsenate reductase [Neisseria meningitidis MC58] >gi|7379014|emb|CAB83560.1| (AL162752) oxidoreductase [Neisseria meningitidis]; protein ArsC; arsenate reductase 1901520..1901873 Neisseria gonorrhoeae FA 1090 3282850 YP_208950.1 CDS NGO1925 NC_002946.2 1901870 1902526 D Best Blastp Hit: emb|CAB83559.1| (AL162752) periplasmic protein [Neisseria meningitidis]; COG1434 Uncharacterized ACR; hypothetical protein 1901870..1902526 Neisseria gonorrhoeae FA 1090 3282694 YP_208951.1 CDS gltX NC_002946.2 1902642 1904036 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1902642..1904036 Neisseria gonorrhoeae FA 1090 3282693 YP_208952.1 CDS NGO1927 NC_002946.2 1904057 1904452 D Best Blastp Hit: pir||H81246 hypothetical protein NMB0002 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225227|gb|AAF40481.1| (AE002359) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1904057..1904452 Neisseria gonorrhoeae FA 1090 3282692 YP_208953.1 CDS NGO1928 NC_002946.2 1904456 1904947 D Best Blastp Hit: pir||D82019 probable acetyltransferase NMA0248 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379010|emb|CAB83556.1| (AL162752) acetyltransferase [Neisseria meningitidis]; COG0456 Acetyltransferases; acetyltransferase 1904456..1904947 Neisseria gonorrhoeae FA 1090 3282691 YP_208954.1 CDS NGO1929 NC_002946.2 1904953 1905081 D Best Blastp Hit: gb|AAA96487.1| (L36381) [Neisseria gonorrhoeae]; hypothetical protein 1904953..1905081 Neisseria gonorrhoeae FA 1090 3282690 YP_208955.1 CDS NGO1930 NC_002946.2 1905223 1907817 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1905223..1907817) Neisseria gonorrhoeae FA 1090 3282689 YP_208956.1 CDS NGO1931 NC_002946.2 1908251 1909255 D Best Blastp Hit: pir||B82019 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) C NMA0246 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379008|emb|CAB83554.1| (AL162752) glyceraldehyde 3-phosphate dehydrogenase C [Neisseria meningitidis]; COG0057 Glyceraldehyde-3-phosphate dehydrogenase; GapC protein 1908251..1909255 Neisseria gonorrhoeae FA 1090 3282688 YP_208957.1 CDS NGO1932 NC_002946.2 1909407 1910087 R Best Blastp Hit: gb|AAF42466.1| (AE002563) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1720 Uncharacterized ACR, YaeB/UPF0066 family; hypothetical protein complement(1909407..1910087) Neisseria gonorrhoeae FA 1090 3282687 YP_208958.1 CDS NGO1933 NC_002946.2 1910547 1911182 D Best Blastp Hit: gb|AAF42465.1| (AE002563) pyrazinamidase/nicotinamidase PncA, [Neisseria meningitidis MC58]; COG1335 Amidases related to nicotinamidase; hypothetical protein 1910547..1911182 Neisseria gonorrhoeae FA 1090 3282686 YP_208959.1 CDS NGO1934 NC_002946.2 1911219 1912187 D Best Blastp Hit: pir||S60783 lipopolysaccharide heptosyltransferase (EC 2.4.99.-) I rfaC [similarity] - Neisseria gonorrhoeae >gi|606855|gb|AAA93059.1| (U10385) lipooligosaccharide heptosyltransferase-1 [Neisseria gonorrhoeae]; COG0859 ADP-heptose:LPS heptosyltransferase; lipopolysaccharide heptosyltransferase I; RfaC 1911219..1912187 Neisseria gonorrhoeae FA 1090 3282685 YP_208960.1 CDS NGO1935 NC_002946.2 1912413 1913162 D Best Blastp Hit: pir||A81001 electron transfer flavoprotein, beta chain NMB2155 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227413|gb|AAF42463.1| (AE002563) electron transfer flavoprotein, beta subunit [Neisseria meningitidis MC58]; COG2086 Electron transfer flavoprotein beta-subunit; electron transfer flavoprotein beta-subunit; EtfB protein 1912413..1913162 Neisseria gonorrhoeae FA 1090 3282684 YP_208961.1 CDS NGO1936 NC_002946.2 1913173 1914108 D Best Blastp Hit: pir||H81000 electron transfer flavoprotein, alpha chain NMB2154 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227412|gb|AAF42462.1| (AE002563) electron transfer flavoprotein, alpha subunit [Neisseria meningitidis MC58]; COG2025 Electron transfer flavoprotein; electron transfer flavoprotein alpha-subunit; EtfA protein 1913173..1914108 Neisseria gonorrhoeae FA 1090 3282683 YP_208962.1 CDS NGO1938 NC_002946.2 1914832 1915035 R Best Blastp Hit: pir||F81000 hypothetical protein NMB2152 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227410|gb|AAF42460.1| (AE002563) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1914832..1915035) Neisseria gonorrhoeae FA 1090 3282682 YP_208963.1 CDS NGO1939 NC_002946.2 1915307 1916578 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 1915307..1916578 Neisseria gonorrhoeae FA 1090 3282681 YP_208964.1 CDS NGO1940 NC_002946.2 1916612 1917214 D Best Blastp Hit: emb|CAB83545.1| (AL162752) hypothetical protein NMA0237 [Neisseria meningitidis]; COG0009 translation factor (SUA5); hypothetical protein 1916612..1917214 Neisseria gonorrhoeae FA 1090 3282680 YP_208965.1 CDS NGO1941 NC_002946.2 1917229 1917744 D Best Blastp Hit: emb|CAB83544.1| (AL162752) NMA0236, unknonwn, len: 77 aa [Neisseria meningitidis]; hypothetical protein 1917229..1917744 Neisseria gonorrhoeae FA 1090 3282679 YP_208966.1 CDS NGO1942 NC_002946.2 1917896 1918318 R Best Blastp Hit: pir||A81003 probable lipoprotein NMA0233 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227404|gb|AAF42455.1| (AE002562) hypothetical protein [Neisseria meningitidis MC58] >gi|7378997|emb|CAB83542.1| (AL162752) lipoprotein [Neisseria meningitidis]; hypothetical protein complement(1917896..1918318) Neisseria gonorrhoeae FA 1090 3282678 YP_208967.1 CDS NGO1943 NC_002946.2 1918568 1918747 R Best Blastp Hit: gb|AAF42453.1| (AE002562) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1918568..1918747) Neisseria gonorrhoeae FA 1090 3282677 YP_208968.1 CDS NGO1944 NC_002946.2 1918753 1919340 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(1918753..1919340) Neisseria gonorrhoeae FA 1090 3282676 YP_208969.1 CDS NGO1945 NC_002946.2 1919362 1920108 R Best Blastp Hit: pir||E82017 hypothetical protein NMA0229 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378995|emb|CAB83540.1| (AL162752) hypothetical protein NMA0229 [Neisseria meningitidis]; hypothetical protein complement(1919362..1920108) Neisseria gonorrhoeae FA 1090 3282675 YP_208970.1 CDS NGO1946 NC_002946.2 1920098 1920940 R Best Blastp Hit: pir||D82017 hypothetical protein NMA0228 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378994|emb|CAB83539.1| (AL162752) hypothetical protein NMA0228 [Neisseria meningitidis]; hypothetical protein complement(1920098..1920940) Neisseria gonorrhoeae FA 1090 3282674 YP_208971.1 CDS NGO1947 NC_002946.2 1921058 1921396 R Best Blastp Hit: pir||C81002 probable periplasmic protein NMA0227 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227398|gb|AAF42449.1| (AE002562) hypothetical protein [Neisseria meningitidis MC58] >gi|7378993|emb|CAB83538.1| (AL162752) periplasmic protein [Neisseria meningitidis]; hypothetical protein complement(1921058..1921396) Neisseria gonorrhoeae FA 1090 3282673 YP_208972.1 CDS NGO1948 NC_002946.2 1921470 1921919 R Best Blastp Hit: pir||B81002 conserved hypothetical protein NMB2140 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227397|gb|AAF42448.1| (AE002562) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1921470..1921919) Neisseria gonorrhoeae FA 1090 3282672 YP_208973.1 CDS NGO1949 NC_002946.2 1922250 1923152 D Best Blastp Hit: pir||A82017 probable lipoprotein NMA0225 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378991|emb|CAB83536.1| (AL162752) possible lipoprotein [Neisseria meningitidis]; COG1752 phosphoesterases, homologs of; hypothetical protein 1922250..1923152 Neisseria gonorrhoeae FA 1090 3282671 YP_208974.1 CDS prfB NC_002946.2 1923255 1924358 D recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 1923255..1924358 Neisseria gonorrhoeae FA 1090 3282670 YP_208975.1 CDS NGO1952 NC_002946.2 1924516 1924728 R Best Blastp Hit: gb|AAF42445.1| (AE002562) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1924516..1924728) Neisseria gonorrhoeae FA 1090 3282669 YP_208976.1 CDS NGO1953 NC_002946.2 1924854 1925114 R Best Blastp Hit: possibly phase variable - 8C residue homopolymer repeat in the coding sequence (ON); hypothetical protein complement(1924854..1925114) Neisseria gonorrhoeae FA 1090 3282668 YP_208977.1 CDS NGO1954 NC_002946.2 1925126 1926583 R Best Blastp Hit: gb|AAF42444.1| (AE002562) peptide transporter [Neisseria meningitidis MC58]; COG0477 Permeases; peptide transporter complement(1925126..1926583) Neisseria gonorrhoeae FA 1090 3282667 YP_208978.1 CDS NGO1955 NC_002946.2 1927364 1931533 R Best Blastp Hit: gb|AAF42443.1| (AE002561) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1927364..1931533) Neisseria gonorrhoeae FA 1090 3282666 YP_208979.1 CDS NGO1956 NC_002946.2 1931588 1933495 R Best Blastp Hit: pir||G81003 conserved hypothetical protein NMB2134 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227390|gb|AAF42442.1| (AE002561) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0729 Predicted outer membrane protein; hypothetical protein complement(1931588..1933495) Neisseria gonorrhoeae FA 1090 3282665 YP_208980.1 CDS NGO1957 NC_002946.2 1933806 1935035 D involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 1933806..1935035 Neisseria gonorrhoeae FA 1090 3282664 YP_208981.1 CDS NGO1958 NC_002946.2 1935186 1936475 D Best Blastp Hit: gb|AAF44763.1|AF235146_1 (AF235146) GNA2132 [Neisseria gonorrhoeae] >gi|7274418|gb|AAF44764.1|AF235147_1 (AF235147) GNA2132 [Neisseria gonorrhoeae]; hypothetical protein 1935186..1936475 Neisseria gonorrhoeae FA 1090 3282663 YP_208982.1 CDS NGO1959 NC_002946.2 1936475 1936678 D Best Blastp Hit: pir||B82029 probable malate dehydrogenase (acceptor) (EC 1.1.99.16) NMA0333 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379088|emb|CAB83637.1| (AL162752) probable malate:quinone oxidoreductase [Neisseria meningitidis]; hypothetical protein 1936475..1936678 Neisseria gonorrhoeae FA 1090 3282662 YP_208983.1 CDS NGO1960 NC_002946.2 1936946 1937212 D hypothetical protein 1936946..1937212 Neisseria gonorrhoeae FA 1090 3282661 YP_208984.1 CDS NGO1961 NC_002946.2 1937605 1938948 R catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase complement(1937605..1938948) Neisseria gonorrhoeae FA 1090 3282660 YP_208985.1 CDS NGO1962 NC_002946.2 1939073 1939873 D Best Blastp Hit: gb|AAF42436.1| (AE002560) CinA-related protein [Neisseria meningitidis MC58]; COG1058 Uncharacterized ACR; hypothetical protein 1939073..1939873 Neisseria gonorrhoeae FA 1090 3282659 YP_208986.1 CDS NGO1963 NC_002946.2 1939913 1940899 D Best Blastp Hit: emb|CAB83609.1| (AL162752) protease [Neisseria meningitidis]; COG0616 Periplasmic serine proteases; protease 1939913..1940899 Neisseria gonorrhoeae FA 1090 3282658 YP_208987.1 CDS NGO1965 NC_002946.2 1942504 1942878 R Best Blastp Hit: pir||A82026 hypothetical protein NMA0307 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379063|emb|CAB83612.1| (AL162752) hypothetical protein NMA0307 [Neisseria meningitidis]; hypothetical protein complement(1942504..1942878) Neisseria gonorrhoeae FA 1090 3282657 YP_208988.1 CDS NGO1966 NC_002946.2 1943052 1943408 R Best Blastp Hit: pir||A81007 hypothetical protein NMB2106 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227367|gb|AAF42421.1| (AE002559) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1943052..1943408) Neisseria gonorrhoeae FA 1090 3282656 YP_208989.1 CDS NGO1967 NC_002946.2 1944697 1945056 R Best Blastp Hit: possibly phase variable - 8T residue homopolymer repeat in the coding sequence (ON); hypothetical protein complement(1944697..1945056) Neisseria gonorrhoeae FA 1090 3282655 YP_208990.1 CDS NGO1969 NC_002946.2 1947207 1947416 R Best Blastp Hit: emb|CAB83344.1| (AL162752) hypothetical protein NMA0024 [Neisseria meningitidis]; hypothetical protein complement(1947207..1947416) Neisseria gonorrhoeae FA 1090 3282654 YP_208991.1 CDS NGO1970 NC_002946.2 1947493 1947852 R Best Blastp Hit: gb|AAF40793.1| (AE002391) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1947493..1947852) Neisseria gonorrhoeae FA 1090 3282653 YP_208992.1 CDS NGO1971 NC_002946.2 1947857 1949353 R Best Blastp Hit: possibly phase variable - two 8A residue homopolymer repeats in the coding sequence (ON); protein MafB5; mafB-like adhesin complement(1947857..1949353) Neisseria gonorrhoeae FA 1090 3282652 YP_208993.1 CDS NGO1972 NC_002946.2 1949393 1950355 R Best Blastp Hit: gb|AAD31038.1|AF142582_2 (AF142582) adhesin MafA [Neisseria gonorrhoeae]; mafA adhesin; MafA4 complement(1949393..1950355) Neisseria gonorrhoeae FA 1090 3282651 YP_208994.1 CDS pyrH NC_002946.2 1950486 1951205 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(1950486..1951205) Neisseria gonorrhoeae FA 1090 3282650 YP_208995.1 CDS tsf NC_002946.2 1951422 1952276 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(1951422..1952276) Neisseria gonorrhoeae FA 1090 3282649 YP_208996.1 CDS rpsB NC_002946.2 1952405 1953133 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(1952405..1953133) Neisseria gonorrhoeae FA 1090 3282648 YP_208997.1 CDS NGO1976 NC_002946.2 1953306 1953539 R Best Blastp Hit: gb|AAF42417.1| (AE002559) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1953306..1953539) Neisseria gonorrhoeae FA 1090 3282647 YP_208998.1 CDS NGO1977 NC_002946.2 1953539 1954198 D Best Blastp Hit: emb|CAB83635.1| (AL162752) hypothetical protein NMA0330 [Neisseria meningitidis]; COG0212 5-formyltetrahydrofolate cyclo-ligase; hypothetical protein 1953539..1954198 Neisseria gonorrhoeae FA 1090 3282646 YP_208999.1 CDS NGO1978 NC_002946.2 1954259 1954849 D Best Blastp Hit: emb|CAB83636.1| (AL162752) hypothetical protein NMA0331 [Neisseria meningitidis]; COG1670 Acetyltransferases, including N-acetylases; hypothetical protein 1954259..1954849 Neisseria gonorrhoeae FA 1090 3282645 YP_209000.1 CDS NGO1980 NC_002946.2 1955233 1956699 D malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 1955233..1956699 Neisseria gonorrhoeae FA 1090 3282644 YP_209001.1 CDS NGO1981 NC_002946.2 1956886 1957446 R Best Blastp Hit: emb|CAB83638.1| (AL162752) adhesin component [Neisseria meningitidis]; hypothetical protein complement(1956886..1957446) Neisseria gonorrhoeae FA 1090 3282643 YP_209002.1 CDS NGO1982 NC_002946.2 1957498 1957797 R Best Blastp Hit: gb|AAF42411.1| (AE002558) hypothetical protein [Neisseria meningitidis MC58] >gi|7379090|emb|CAB83639.1| (AL162752) hypothetical protein NMA0336 [Neisseria meningitidis]; hypothetical protein complement(1957498..1957797) Neisseria gonorrhoeae FA 1090 3282642 YP_209003.1 CDS NGO1983 NC_002946.2 1957896 1958675 R Best Blastp Hit: pir||C81008 methionine aminopeptidase NMB2093 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227355|gb|AAF42410.1| (AE002558) methionine aminopeptidase [Neisseria meningitidis MC58]; COG0024 Methionine aminopeptidase; hypothetical protein complement(1957896..1958675) Neisseria gonorrhoeae FA 1090 3282641 YP_209004.1 CDS NGO1984 NC_002946.2 1958715 1959365 R Best Blastp Hit: gb|AAF42409.1| (AE002558) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1958715..1959365) Neisseria gonorrhoeae FA 1090 3282640 YP_209005.1 CDS NGO1985 NC_002946.2 1959373 1959981 R Best Blastp Hit: pir||G82029 probable lipoprotein NMA0339 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379093|emb|CAB83642.1| (AL162752) lipoprotein [Neisseria meningitidis]; hypothetical protein complement(1959373..1959981) Neisseria gonorrhoeae FA 1090 3282639 YP_209006.1 CDS gmhA NC_002946.2 1960045 1960638 R catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase complement(1960045..1960638) Neisseria gonorrhoeae FA 1090 3282638 YP_209007.1 CDS NGO1987 NC_002946.2 1960643 1960990 R Best Blastp Hit: pir||A82030 hypothetical protein NMA0341 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379095|emb|CAB83644.1| (AL162752) hypothetical protein NMA0341 [Neisseria meningitidis]; COG0792 Predicted endonuclease distantly related to; hypothetical protein complement(1960643..1960990) Neisseria gonorrhoeae FA 1090 3282637 YP_209008.1 CDS NGO1988 NC_002946.2 1961037 1961912 D Best Blastp Hit: pir||B82030 hypothetical protein NMA0342 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379096|emb|CAB83645.1| (AL162752) hypothetical protein NMA0342 [Neisseria meningitidis]; COG0313 Predicted methyltransferases; hypothetical protein 1961037..1961912 Neisseria gonorrhoeae FA 1090 3282636 YP_209009.1 CDS NGO1989 NC_002946.2 1961935 1962756 D Best Blastp Hit: pir||E81007 hypothetical protein NMB2087 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227349|gb|AAF42404.1| (AE002558) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1961935..1962756 Neisseria gonorrhoeae FA 1090 3282635 YP_209010.1 CDS obgE NC_002946.2 1962756 1963910 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 1962756..1963910 Neisseria gonorrhoeae FA 1090 3282634 YP_209011.1 CDS NGO1991 NC_002946.2 1963964 1964911 D Best Blastp Hit: gb|AAB03206.2| (U42459) cytosine DNA methylase M.NgoI [Neisseria gonorrhoeae]; COG0270 Site-specific DNA methylase dcm; NgoIM 1963964..1964911 Neisseria gonorrhoeae FA 1090 3282633 YP_209012.1 CDS NGO1992 NC_002946.2 1964908 1965960 D Best Blastp Hit: gb|AAB03207.2| (U42459) NgoI restriction endonuclease R.NgoI [Neisseria gonorrhoeae]; NgoI restriction endonuclease 1964908..1965960 Neisseria gonorrhoeae FA 1090 3282632 YP_209013.1 CDS NGO1993 NC_002946.2 1965976 1967397 D Best Blastp Hit: emb|CAB83651.1| (AL162752) cysteinyl-tRNA synthetase [Neisseria meningitidis]; COG0215 Cysteinyl-tRNA synthetase; hypothetical protein 1965976..1967397 Neisseria gonorrhoeae FA 1090 3282631 YP_209014.1 CDS NGO1994 NC_002946.2 1967568 1968347 D Best Blastp Hit: pir||H81009 exodeoxyribonuclease NMB2082 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227344|gb|AAF42400.1| (AE002557) exodeoxyribonuclease [Neisseria meningitidis MC58] >gi|7379103|emb|CAB83652.1| (AL162752) nuclease [Neisseria meningitidis]; COG0708 Exonuclease III; exodeoxyribonuclease 1967568..1968347 Neisseria gonorrhoeae FA 1090 3282630 YP_209015.1 CDS NGO1995 NC_002946.2 1968334 1968678 D Best Blastp Hit: pir||G81009 hypothetical protein NMB2081 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227343|gb|AAF42399.1| (AE002557) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1968334..1968678 Neisseria gonorrhoeae FA 1090 3282629 YP_209016.1 CDS NGO1996 NC_002946.2 1968688 1969218 D Best Blastp Hit: pir||C82031 hypothetical protein NMA0350 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379105|emb|CAB83654.1| (AL162752) hypothetical protein NMA0350 [Neisseria meningitidis]; hypothetical protein 1968688..1969218 Neisseria gonorrhoeae FA 1090 3282628 YP_209017.1 CDS NGO1997 NC_002946.2 1969311 1970426 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(1969311..1970426) Neisseria gonorrhoeae FA 1090 3282627 YP_209018.1 CDS NGO1998 NC_002946.2 1970601 1971182 D Best Blastp Hit: pir||D81009 conserved hypothetical protein NMB2078 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227340|gb|AAF42396.1| (AE002557) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 1970601..1971182 Neisseria gonorrhoeae FA 1090 3282626 YP_209019.1 CDS NGO1999 NC_002946.2 1971244 1972098 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(1971244..1972098) Neisseria gonorrhoeae FA 1090 3282625 YP_209020.1 CDS NGO2000 NC_002946.2 1972738 1973244 D Best Blastp Hit: pir||G82031 probable transferase NMA0356 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379109|emb|CAB83658.1| (AL162752) transferase [Neisseria meningitidis]; COG0615 Predicted cytidylyltransferases; transferase 1972738..1973244 Neisseria gonorrhoeae FA 1090 3282624 YP_209021.1 CDS NGO2001 NC_002946.2 1973241 1975019 D activates biotin to form biotinyl-5'-adenylate and transfers the biotin moiety to biotin-accepting proteins and catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase 1973241..1975019 Neisseria gonorrhoeae FA 1090 3282623 YP_209022.1 CDS NGO2002 NC_002946.2 1975132 1975956 D Best Blastp Hit: pir||A82032 probable periplasmic protein NMA0358 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379111|emb|CAB83660.1| (AL162752) periplasmic protein [Neisseria meningitidis]; hypothetical protein 1975132..1975956 Neisseria gonorrhoeae FA 1090 3282622 YP_209023.1 CDS NGO2003 NC_002946.2 1976165 1976287 R Best Blastp Hit: gb|AAF42392.1| (AE002557) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(1976165..1976287) Neisseria gonorrhoeae FA 1090 3282621 YP_209024.1 CDS NGO2004 NC_002946.2 1976422 1976658 D hypothetical protein 1976422..1976658 Neisseria gonorrhoeae FA 1090 3282620 YP_209025.1 CDS thiG NC_002946.2 1976689 1977477 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(1976689..1977477) Neisseria gonorrhoeae FA 1090 3282619 YP_209026.1 CDS NGO2006 NC_002946.2 1977556 1977750 R Best Blastp Hit: emb|CAB83663.1| (AL162752) hypothetical protein NMA0362 [Neisseria meningitidis]; hypothetical protein complement(1977556..1977750) Neisseria gonorrhoeae FA 1090 3282618 YP_209027.1 CDS NGO2007 NC_002946.2 1978172 1978789 R Best Blastp Hit: gb|AAF42388.1| (AE002556) thiamin-phosphate pyrophosphorylase [Neisseria meningitidis MC58]; COG0352 Thiamine monophosphate synthase; thiamin-phosphate pyrophosphorylase complement(1978172..1978789) Neisseria gonorrhoeae FA 1090 3282617 YP_209028.1 CDS NGO2008 NC_002946.2 1978811 1979911 R Best Blastp Hit: gb|AAF42387.1| (AE002556) D-amino acid oxidase flavoprotein, [Neisseria meningitidis MC58]; COG0665 Predicted oxidoreductases; oxidoreductase complement(1978811..1979911) Neisseria gonorrhoeae FA 1090 3282616 YP_209029.1 CDS NGO2009 NC_002946.2 1979908 1981134 R Best Blastp Hit: gb|AAF42386.1| (AE002556) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1457 Purine-cytosine permease and related; permease complement(1979908..1981134) Neisseria gonorrhoeae FA 1090 3282131 YP_209030.1 CDS NGO2010 NC_002946.2 1981421 1982863 D Best Blastp Hit: pir||A82033 TLDD protein homolog NMA0367 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379119|emb|CAB83668.1| (AL162752) TLDD protein homolog [Neisseria meningitidis]; COG0312 Predicted Zn-dependent proteases and their; hypothetical protein 1981421..1982863 Neisseria gonorrhoeae FA 1090 3281898 YP_209031.1 CDS NGO2011 NC_002946.2 1983007 1983666 D Best Blastp Hit: pir||F81391 amino-acid ABC transporter integral membrane protein Cj0467 [imported] - Campylobacter jejuni (strain NCTC 11168) >gi|6967938|emb|CAB75105.1| (AL139075) amino-acid ABC transporter integral membrane protein [Campylobacter jejuni]; COG0765 Amino acid ABC transporter permease; ABC transporter permease, amino acid 1983007..1983666 Neisseria gonorrhoeae FA 1090 3282615 YP_209032.1 CDS NGO2012 NC_002946.2 1983656 1984324 D Best Blastp Hit: pir||B64666 glutamine ABC transporter permease - Helicobacter pylori (strain 26695) >gi|2314329|gb|AAD08216.1| (AE000623) glutamine ABC transporter permease (glnP) [Helicobacter pylori 26695]; COG0765 Amino acid ABC transporter permease; ABC transporter permease, amino acid 1983656..1984324 Neisseria gonorrhoeae FA 1090 3282700 YP_209033.1 CDS NGO2013 NC_002946.2 1984326 1985057 D Best Blastp Hit: pir||H81391 amino-acid ABC transporter ATP-binding protein Cj0469 [imported] - Campylobacter jejuni (strain NCTC 11168) >gi|6967940|emb|CAB75107.1| (AL139075) amino-acid ABC transporter ATP-binding protein [Campylobacter jejuni]; COG1126 ABC-type polar amino acid transport system; ABC transporter ATP-binding protein, amino acid 1984326..1985057 Neisseria gonorrhoeae FA 1090 3282699 YP_209034.1 CDS NGO2014 NC_002946.2 1985170 1986024 D Best Blastp Hit: gb|AAD26123.1| (AF109148) antigenic protein [Actinobacillus pleuropneumoniae]; COG0834 Periplasmic amino acid binding proteins; ABC transporter periplasmic binding protein, amino acid 1985170..1986024 Neisseria gonorrhoeae FA 1090 3282698 YP_209035.1 CDS NGO2015 NC_002946.2 1986403 1987260 D Best Blastp Hit: gb|AAF42384.1| (AE002556) hemK protein [Neisseria meningitidis MC58]; COG0500 SAM-dependent methyltransferases; hypothetical protein 1986403..1987260 Neisseria gonorrhoeae FA 1090 3282697 YP_209036.1 CDS NGO2016 NC_002946.2 1987346 1988734 D Best Blastp Hit: pir||D81010 conserved hypothetical protein NMB2064 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227326|gb|AAF42383.1| (AE002556) conserved hypothetical protein [Neisseria meningitidis MC58]; COG2056 Predicted permease; hypothetical protein 1987346..1988734 Neisseria gonorrhoeae FA 1090 3282696 YP_209037.1 CDS NGO2017 NC_002946.2 1988735 1988959 D Best Blastp Hit: gb|AAF42382.1| (AE002556) slyX protein, [Neisseria meningitidis MC58]; hypothetical protein 1988735..1988959 Neisseria gonorrhoeae FA 1090 3282695 YP_209038.1 CDS NGO2018 NC_002946.2 1989067 1989261 D hypothetical protein 1989067..1989261 Neisseria gonorrhoeae FA 1090 3282729 YP_209039.1 CDS NGO2019 NC_002946.2 1989359 1990129 R Best Blastp Hit: pir||B81010 thiF protein NMB2062 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227324|gb|AAF42381.1| (AE002556) thiF protein [Neisseria meningitidis MC58]; COG0476 Dinucleotide-utilizing enzymes involved in; hypothetical protein complement(1989359..1990129) Neisseria gonorrhoeae FA 1090 3282728 YP_209040.2 CDS NGO2020 NC_002946.2 1990296 1992998 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 1990296..1992998 Neisseria gonorrhoeae FA 1090 3282727 YP_209041.1 CDS gpsA NC_002946.2 1993121 1994110 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 1993121..1994110 Neisseria gonorrhoeae FA 1090 3282726 YP_209042.1 CDS NGO2022 NC_002946.2 1994164 1994493 D Best Blastp Hit: pir||F81953 hypothetical protein NMA0376 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379129|emb|CAB83677.1| (AL162753) hypothetical protein NMA0376 [Neisseria meningitidis]; hypothetical protein 1994164..1994493 Neisseria gonorrhoeae FA 1090 3282725 YP_209043.1 CDS NGO2023 NC_002946.2 1994504 1994809 D Best Blastp Hit: gb|AAF42378.1| (AE002555) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379130|emb|CAB83678.1| (AL162753) hypothetical protein NMA0377 [Neisseria meningitidis]; hypothetical protein 1994504..1994809 Neisseria gonorrhoeae FA 1090 3282724 YP_209044.1 CDS rplM NC_002946.2 1995172 1995603 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 1995172..1995603 Neisseria gonorrhoeae FA 1090 3282723 YP_209045.1 CDS rpsI NC_002946.2 1995616 1996008 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 1995616..1996008 Neisseria gonorrhoeae FA 1090 3282722 YP_209046.1 CDS NGO2026 NC_002946.2 1996389 1996883 R hypothetical protein complement(1996389..1996883) Neisseria gonorrhoeae FA 1090 3282721 YP_209047.1 CDS NGO2027 NC_002946.2 1997076 1998005 R Best Blastp Hit: pir||H81011 transcription regulator, LysR family NMB2055 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227317|gb|AAF42375.1| (AE002555) transcriptional regulator, LysR family [Neisseria meningitidis MC58]; COG0583 Transcriptional regulators, LysR family; protein MetR; methionine biosynthesis transcriptional regulator complement(1997076..1998005) Neisseria gonorrhoeae FA 1090 3282720 YP_209048.1 CDS NGO2028 NC_002946.2 1998134 1998883 D Best Blastp Hit: pir||D81954 hypothetical protein NMA0382 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379135|emb|CAB83683.1| (AL162753) hypothetical protein NMA0382 [Neisseria meningitidis]; COG0327 Uncharacterized ACR, YbgI/Acr family; hypothetical protein 1998134..1998883 Neisseria gonorrhoeae FA 1090 3282719 YP_209049.1 CDS NGO2029 NC_002946.2 1999006 1999587 D Best Blastp Hit: gb|AAF42373.1| (AE002555) ubiquinol--cytochrome c reductase, iron-sulfur subunit [Neisseria meningitidis MC58] >gi|7379136|emb|CAB83684.1| (AL162753) ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria meningitidis]; COG0723 Rieske Fe-S protein; ubiquinol--cytochrome c reductase iron-sulfur subunit; PetA 1999006..1999587 Neisseria gonorrhoeae FA 1090 3282718 YP_209050.1 CDS NGO2030 NC_002946.2 1999606 2000955 D Best Blastp Hit: pir||F81954 ubiquinol--cytochrome-c reductase (EC 1.10.2.2) cytochrome b NMA0384 [similarity] - Neisseria meningitidis (group A strain Z2491) >gi|7379137|emb|CAB83685.1| (AL162753) cytochrome B [Neisseria meningitidis]; COG1290 Cytochrome b (b6-like); protein PetB; cytochrome B 1999606..2000955 Neisseria gonorrhoeae FA 1090 3282717 YP_209051.1 CDS NGO2031 NC_002946.2 2000970 2001758 D Best Blastp Hit: emb|CAB83686.1| (AL162753) cytochrome C1 precursor [Neisseria meningitidis]; protein PetC; cytochrome C1 precursor 2000970..2001758 Neisseria gonorrhoeae FA 1090 3282716 YP_209052.1 CDS NGO2032 NC_002946.2 2002090 2003880 D Best Blastp Hit: gb|AAF42370.1| (AE002555) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1322 Uncharacterized BCR, YigN family; hypothetical protein 2002090..2003880 Neisseria gonorrhoeae FA 1090 3282715 YP_209053.1 CDS NGO2033 NC_002946.2 2003947 2004579 R Best Blastp Hit: pir||A81955 probable hydrolase NMA0387 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379140|emb|CAB83688.1| (AL162753) hydrolase [Neisseria meningitidis]; COG0491 Zn-dependent hydrolases; hydrolase complement(2003947..2004579) Neisseria gonorrhoeae FA 1090 3282714 YP_209054.1 CDS NGO2034 NC_002946.2 2004672 2005496 D catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 2004672..2005496 Neisseria gonorrhoeae FA 1090 3282713 YP_209055.1 CDS NGO2035 NC_002946.2 2005565 2006128 D Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase 2005565..2006128 Neisseria gonorrhoeae FA 1090 3282712 YP_209056.1 CDS NGO2036 NC_002946.2 2006212 2006649 D Best Blastp Hit: emb|CAB83691.1| (AL162753) sugar transport PTS system IIA component [Neisseria meningitidis]; PTS system sugar transporter subunit IIA 2006212..2006649 Neisseria gonorrhoeae FA 1090 3282711 YP_209057.1 CDS NGO2037 NC_002946.2 2006870 2007139 D Best Blastp Hit: pir||A81013 sugar transport PTS system phosphocarrier protein HPR NMA0391 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227306|gb|AAF42365.1| (AE002554) phosphocarrier protein HPr [Neisseria meningitidis MC58] >gi|7379144|emb|CAB83692.1| (AL162753) sugar transport PTS system phosphocarrier protein HPR [Neisseria meningitidis]; COG1925 Phosphotransferase system, HPr-related; sugar transport PTS system phosphocarrier protein HPr; protein PtsH 2006870..2007139 Neisseria gonorrhoeae FA 1090 3282710 YP_209058.1 CDS NGO2038 NC_002946.2 2007139 2008914 D Best Blastp Hit: pir||H81012 phosphoenolpyruvate-protein phosphotransferase NMB2044 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227305|gb|AAF42364.1| (AE002554) phosphoenolpyruvate-protein phosphotransferase [Neisseria meningitidis MC58]; COG1080 Phosphoenolpyruvate-protein kinase (PTS; protein PtsI; phosphoenolpyruvate-protein phosphotransferase 2007139..2008914 Neisseria gonorrhoeae FA 1090 3282709 YP_209059.1 CDS NGO2039 NC_002946.2 2009041 2009982 R Best Blastp Hit: emb|CAB83694.1| (AL162753) ABC-transport system ATP-binding protein [Neisseria meningitidis]; COG1128 ABC-type spermidine/putrescine transport; ABC transporter ATP-binding protein, amino acid complement(2009041..2009982) Neisseria gonorrhoeae FA 1090 3282708 YP_209060.1 CDS NGO2040 NC_002946.2 2009991 2010866 R Best Blastp Hit: pir||F81012 thiamin pyrophosphokinase-related protein NMB2041 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227303|gb|AAF42362.1| (AE002554) thiamin pyrophosphokinase-related protein [Neisseria meningitidis MC58]; hypothetical protein complement(2009991..2010866) Neisseria gonorrhoeae FA 1090 3282707 YP_209061.1 CDS NGO2041 NC_002946.2 2011464 2013365 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 2011464..2013365 Neisseria gonorrhoeae FA 1090 3282706 YP_209062.1 CDS NGO2042 NC_002946.2 2015247 2015468 D hypothetical protein 2015247..2015468 Neisseria gonorrhoeae FA 1090 3282705 YP_209063.1 CDS NGO2043 NC_002946.2 2017051 2017365 D Best Blastp Hit: pir||F82022 probable glycerate dehydrogenase (EC 1.1.1.29) NMA0274 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379036|emb|CAB83582.1| (AL162752) glycerate dehydrogenase [Neisseria meningitidis]; COG1052 Lactate dehydrogenase and related; dehydrogenase-like protein 2017051..2017365 Neisseria gonorrhoeae FA 1090 3282704 YP_209064.1 CDS metG NC_002946.2 2017440 2019494 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(2017440..2019494) Neisseria gonorrhoeae FA 1090 3282703 YP_209065.1 CDS NGO2045 NC_002946.2 2019610 2021448 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(2019610..2021448) Neisseria gonorrhoeae FA 1090 3282702 YP_209066.1 CDS NGO2046 NC_002946.2 2021482 2021670 D hypothetical protein 2021482..2021670 Neisseria gonorrhoeae FA 1090 3282701 YP_209067.1 CDS NGO2047 NC_002946.2 2021721 2022242 D Best Blastp Hit: possibly phase variable - 9A residue homopolymer repeat in the coding sequence (ON); hypothetical protein 2021721..2022242 Neisseria gonorrhoeae FA 1090 3282731 YP_209068.1 CDS NGO2048 NC_002946.2 2022525 2023850 R Best Blastp Hit: gb|AAF44779.1|AF235145_1 (AF235145) GNA33 [Neisseria gonorrhoeae]; genome-derived Neisserial antigen 33 complement(2022525..2023850) Neisseria gonorrhoeae FA 1090 3282730 YP_209069.1 CDS NGO2050 NC_002946.2 2024900 2026066 D Best Blastp Hit: pir||E81244 conserved hypothetical protein NMB0035 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225255|gb|AAF40506.1| (AE002362) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 2024900..2026066 Neisseria gonorrhoeae FA 1090 3282857 YP_209070.1 CDS NGO2051 NC_002946.2 2026373 2027638 D Best Blastp Hit: pir||F81244 conserved hypothetical protein NMB0036 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225256|gb|AAF40507.1| (AE002362) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 2026373..2027638 Neisseria gonorrhoeae FA 1090 3282852 YP_209071.1 CDS NGO2052 NC_002946.2 2027710 2028039 R Best Blastp Hit: pir||G81244 phnA protein NMB0037 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225257|gb|AAF40508.1| (AE002362) phnA protein [Neisseria meningitidis MC58]; alkylphosphonate uptake protein; PhnA protein complement(2027710..2028039) Neisseria gonorrhoeae FA 1090 3282733 YP_209072.1 CDS NGO2053 NC_002946.2 2028114 2029484 R Best Blastp Hit: sp|Q50986|GLMU_NEIGO UDP-N-acetylglucosamine pyrophosphorylase (N-acetylglucosamine-1-phosphate uridyltransferase) >gi|975206|emb|CAA90326.1| (Z50023) uridyltransferase [Neisseria gonorrhoeae]; COG1207; UDP-N-acetylglucosamine pyrophosphorylase complement(2028114..2029484) Neisseria gonorrhoeae FA 1090 3282732 YP_209073.1 CDS NGO2054 NC_002946.2 2029539 2029811 R Best Blastp Hit: gb|AAF40510.1| (AE002362) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(2029539..2029811) Neisseria gonorrhoeae FA 1090 3282742 YP_209074.1 CDS NGO2055 NC_002946.2 2029787 2030515 R Best Blastp Hit: emb|CAB83593.1| (AL162752) possible hydrolase [Neisseria meningitidis]; COG1011 Predicted hydrolases of the HAD superfamily; hydrolase complement(2029787..2030515) Neisseria gonorrhoeae FA 1090 3282741 YP_209075.1 CDS NGO2056 NC_002946.2 2030574 2031575 D Best Blastp Hit: emb|CAB83594.1| (AL162752) thiamin-binding periplasmic protein [Neisseria meningitidis]; COG1840 Thiamine-binding periplasmic proteins; ABC transporter thiamine-binding periplasmic protein 2030574..2031575 Neisseria gonorrhoeae FA 1090 3282740 YP_209076.1 CDS NGO2057 NC_002946.2 2031669 2032517 D Best Blastp Hit: pir||D81245 conserved hypothetical protein NMB0042 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225262|gb|AAF40513.1| (AE002362) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0668 Uncharacterized ACR, integral membrane; hypothetical protein 2031669..2032517 Neisseria gonorrhoeae FA 1090 3282739 YP_209077.1 CDS NGO2058 NC_002946.2 2032543 2033025 D Best Blastp Hit: pir||E81245 conserved hypothetical protein NMB0043 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225263|gb|AAF40514.1| (AE002362) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379050|emb|CAB83596.1| (AL162752) hypothetical protein NMA0289 [Neisseria meningitidis]; COG1546 Uncharacterized protein CinA/YgaD; hypothetical protein 2032543..2033025 Neisseria gonorrhoeae FA 1090 3282738 YP_209078.1 CDS NGO2059 NC_002946.2 2033109 2034677 R this is a fusion of 3 domains, an N-termianl thioredoxin domain, and 2 domains at the C-terminus that are methionine sulfoxide reductases, MsrA and MsrB; methionine is modified to form methionine sulfoxide during normal cellular processes and due to oxidat; trifunctional thioredoxin/methionine sulfoxide reductase A/B protein complement(2033109..2034677) Neisseria gonorrhoeae FA 1090 3282737 YP_209079.1 CDS NGO2060 NC_002946.2 2034823 2036088 D Best Blastp Hit: sp|P14929|PILA_NEIGO probably signal recognition particle protein (DOCKING protein); COG0552 Signal recognition particle GTPase FtsY; signal recognition particle protein 2034823..2036088 Neisseria gonorrhoeae FA 1090 3282736 YP_209080.1 CDS lpxC NC_002946.2 2039365 2040288 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(2039365..2040288) Neisseria gonorrhoeae FA 1090 3282735 YP_209081.1 CDS NGO2068 NC_002946.2 2046714 2047403 R Best Blastp Hit: gb|AAF42356.1| (AE002553) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1451 Predicted metal-dependent hydrolase; hypothetical protein complement(2046714..2047403) Neisseria gonorrhoeae FA 1090 3282734 YP_209082.1 CDS NGO2069 NC_002946.2 2047400 2048143 R Best Blastp Hit: pir||G81013 1-acyl-sn-glycerol-3-phosphate acyltransferase, probable NMB2034 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227295|gb|AAF42355.1| (AE002553) 1-acyl-sn-glycerol-3-phosphate acyltransferase, [Neisseria meningitidis MC58]; COG0204 1-acyl-sn-glycerol-3-phosphate; NlaB; 1-acyl-SN-glycerol-3-phosphate acyltransferase complement(2047400..2048143) Neisseria gonorrhoeae FA 1090 3282848 YP_209083.1 CDS NGO2070 NC_002946.2 2048173 2048736 R Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase complement(2048173..2048736) Neisseria gonorrhoeae FA 1090 3282847 YP_209084.1 CDS NGO2071 NC_002946.2 2048879 2050531 D Best Blastp Hit: pir||C81957 probable integral membrane protein NMA0408 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379158|emb|CAB83707.1| (AL162753) integral membrane protein [Neisseria meningitidis]; COG1368 Phosphoglycerol transferase MdoB and related; hypothetical protein 2048879..2050531 Neisseria gonorrhoeae FA 1090 3282846 YP_209085.1 CDS NGO2072 NC_002946.2 2050598 2051653 R Best Blastp Hit: possibly phase variable - 11C residue homopolymer repeat in the coding sequence (ON); COG0438 Glycosyltransferases I; lipooligosaccharide glycosyl transferase G complement(2050598..2051653) Neisseria gonorrhoeae FA 1090 3282845 YP_209086.1 CDS NGO2073 NC_002946.2 2051805 2053046 R Best Blastp Hit: pir||E81013 tryptophan transporter NMB2031 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227293|gb|AAF42353.1| (AE002553) tryptophan transporter [Neisseria meningitidis MC58]; COG0814 Amino acid permeases; tryptophan transport protein, tryptophan permease; TnaB complement(2051805..2053046) Neisseria gonorrhoeae FA 1090 3282844 YP_209087.1 CDS NGO2074 NC_002946.2 2053194 2053922 D Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2053194..2053922 Neisseria gonorrhoeae FA 1090 3282843 YP_209088.1 CDS NGO2075 NC_002946.2 2053959 2054876 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase 2053959..2054876 Neisseria gonorrhoeae FA 1090 3282842 YP_209089.1 CDS NGO2076 NC_002946.2 2055062 2055580 R Best Blastp Hit: pir||G81015 probable gluconokinase (EC 2.7.1.12) NMA0412 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227290|gb|AAF42351.1| (AE002552) thermoresistant gluconokinase [Neisseria meningitidis MC58] >gi|7379162|emb|CAB83711.1| (AL162753) glucokinase [Neisseria meningitidis]; COG0529 Adenylylsulfate kinase and related kinases; glucokinase complement(2055062..2055580) Neisseria gonorrhoeae FA 1090 3282841 YP_209090.1 CDS NGO2077 NC_002946.2 2055600 2056985 R Best Blastp Hit: pir||H81957 probable gluconate permease NMA0413 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379163|emb|CAB83712.1| (AL162753) gluconate permease [Neisseria meningitidis]; GntP protein complement(2055600..2056985) Neisseria gonorrhoeae FA 1090 3282840 YP_209091.1 CDS NGO2078 NC_002946.2 2057326 2058918 D Best Blastp Hit: gb|AAF42349.1| (AE002552) ABC transporter permease [Neisseria meningitidis MC58]; COG1178 Uncharacterized transport system, permease; ABC transporter permease 2057326..2058918 Neisseria gonorrhoeae FA 1090 3282839 YP_209092.1 CDS NGO2079 NC_002946.2 2058947 2059546 D Best Blastp Hit: pir||D81015 conserved hypothetical protein NMB2025 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227287|gb|AAF42348.1| (AE002552) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379165|emb|CAB83714.1| (AL162753) hypothetical protein NMA0415 [Neisseria meningitidis]; COG0288 Carbonic anhydrase; carbonic anhydrase 2058947..2059546 Neisseria gonorrhoeae FA 1090 3282838 YP_209093.1 CDS NGO2080 NC_002946.2 2059543 2060148 D Best Blastp Hit: sp|P57090|NADD_NEIMB probable nicotinate-nucleotide adenyltransferase (deamido-NAD(+) pyrophosphorylase)(deamido-NAD(+) diphosphorylase) (nicotinate mononucleotide adenylyltransferase) (NAMN adenylyltransferase) >gi|11278845|pir||C81015 conserved hypothetical protein NMB2024 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227286|gb|AAF42347.1| (AE002552) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1057 Predicted nucleotidyltransferases; hypothetical protein 2059543..2060148 Neisseria gonorrhoeae FA 1090 3282837 YP_209094.1 CDS NGO2081 NC_002946.2 2060207 2060593 D Best Blastp Hit: gb|AAF42346.1| (AE002552) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379167|emb|CAB83716.1| (AL162753) hypothetical protein NMA0417 [Neisseria meningitidis]; COG0799 Uncharacterized ACR (homolog of plant; hypothetical protein 2060207..2060593 Neisseria gonorrhoeae FA 1090 3282836 YP_209095.1 CDS NGO2082 NC_002946.2 2060646 2061116 D SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 2060646..2061116 Neisseria gonorrhoeae FA 1090 3282835 YP_209096.1 CDS NGO2083 NC_002946.2 2061190 2061456 D Best Blastp Hit: gb|AAF42344.1| (AE002552) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379169|emb|CAB83718.1| (AL162753) hypothetical protein NMA0419 [Neisseria meningitidis]; hypothetical protein 2061190..2061456 Neisseria gonorrhoeae FA 1090 3282834 YP_209097.1 CDS NGO2084 NC_002946.2 2061613 2062296 D Best Blastp Hit: pir||G81014 conserved hypothetical protein NMB2020 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227282|gb|AAF42343.1| (AE002552) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379170|emb|CAB83719.1| (AL162753) integral membrane protein [Neisseria meningitidis]; COG0670 Integral membrane protein YccA, interacts; hypothetical protein 2061613..2062296 Neisseria gonorrhoeae FA 1090 3282833 YP_209098.1 CDS coaD NC_002946.2 2062426 2062941 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 2062426..2062941 Neisseria gonorrhoeae FA 1090 3282832 YP_209099.1 CDS NGO2086 NC_002946.2 2063080 2064387 R Best Blastp Hit: emb|CAC14203.1| (AJ277636) MapB protein [Pasteurella multocida]; hypothetical protein complement(2063080..2064387) Neisseria gonorrhoeae FA 1090 3282831 YP_209100.1 CDS NGO2087 NC_002946.2 2064373 2065026 D Best Blastp Hit: pir||G81087 IS1016C2 transposase NMB1411 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226649|gb|AAF41773.1| (AE002489) IS1016C2 transposase [Neisseria meningitidis MC58]; IS1016 transposase 2064373..2065026 Neisseria gonorrhoeae FA 1090 3282830 YP_209101.1 CDS NGO2088 NC_002946.2 2065061 2065819 R Best Blastp Hit: pir||A81962 probable ABC transporter ATP-binding subunit NMA0448 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379196|emb|CAB83745.1| (AL162753) ABC transporter ATP-binding subunit [Neisseria meningitidis]; COG1120 ABC-type iron (III) transport system, ATPase; ABC transporter ATP-binding protein, enterobactin complement(2065061..2065819) Neisseria gonorrhoeae FA 1090 3282829 YP_209102.1 CDS NGO2089 NC_002946.2 2065903 2066529 R Best Blastp Hit: pir||G81018 hypothetical protein NMB1992 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227254|gb|AAF42319.1| (AE002548) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(2065903..2066529) Neisseria gonorrhoeae FA 1090 3282828 YP_209103.1 CDS NGO2090 NC_002946.2 2066574 2067548 R Best Blastp Hit: gb|AAF42318.1| (AE002548) iron(III) ABC transporter permease [Neisseria meningitidis MC58]; COG0609 Iron, hemin, cobalamine permeases; ABC transporter permease, enterobactin complement(2066574..2067548) Neisseria gonorrhoeae FA 1090 3282827 YP_209104.1 CDS NGO2091 NC_002946.2 2067538 2068506 R Best Blastp Hit: pir||E81018 iron(III) ABC transporter permease NMB1990 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227252|gb|AAF42317.1| (AE002548) iron(III) ABC transporter permease [Neisseria meningitidis MC58]; COG0609 Iron, hemin, cobalamine permeases; ABC transporter permease, enterobactin complement(2067538..2068506) Neisseria gonorrhoeae FA 1090 3282826 YP_209105.1 CDS NGO2092 NC_002946.2 2068734 2069705 R Best Blastp Hit: gb|AAD29611.1|AF115385_1 (AF115385) ferric enterobactin periplasmic binding protein [Neisseria gonorrhoeae]; COG0614 Ferrichrome-binding periplasmic proteins; ferric enterobactin periplasmic binding protein complement(2068734..2069705) Neisseria gonorrhoeae FA 1090 3282825 YP_209106.1 CDS NGO2093 NC_002946.2 2069857 2071998 R Best Blastp Hit: possibly phase variable - 8T residue homopolymer repeat in the coding sequence (ON); COG1629 Outer membrane receptor proteins, mostly Fe; ferric enterobactin receptor; FetA complement(2069857..2071998) Neisseria gonorrhoeae FA 1090 3282824 YP_209107.1 CDS groES NC_002946.2 2072506 2072796 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 2072506..2072796 Neisseria gonorrhoeae FA 1090 3282823 YP_209108.1 CDS groEL NC_002946.2 2072888 2074522 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 2072888..2074522 Neisseria gonorrhoeae FA 1090 3282822 YP_209109.1 CDS NGO2096 NC_002946.2 2075176 2076762 D Best Blastp Hit: pir||E81964 probable sodium-dependent inner membrane transport protein NMA0470 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379216|emb|CAB83765.1| (AL162753) sodium-dependent inner membrane transport protein [Neisseria meningitidis]; COG0733 Sodium-dependent transporters (SNF family); sodium-dependent transporter 2075176..2076762 Neisseria gonorrhoeae FA 1090 3282821 YP_209110.1 CDS NGO2097 NC_002946.2 2076903 2077325 R hypothetical protein complement(2076903..2077325) Neisseria gonorrhoeae FA 1090 3282820 YP_209111.1 CDS NGO2098 NC_002946.2 2077519 2078739 R Best Blastp Hit: pir||D81964 diaminopimelate decarboxylase (EC 4.1.1.20) NMA0468 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379215|emb|CAB83764.1| (AL162753) diaminopimelate decarboxylase [Neisseria meningitidis]; COG0019 Diaminopimelate decarboxylase; hypothetical protein complement(2077519..2078739) Neisseria gonorrhoeae FA 1090 3282819 YP_209112.1 CDS NGO2099 NC_002946.2 2078750 2078920 R Best Blastp Hit: emb|CAB83763.1| (AL162753) lipoprotein [Neisseria meningitidis]; hypothetical protein complement(2078750..2078920) Neisseria gonorrhoeae FA 1090 3282818 YP_209113.1 CDS cyaY NC_002946.2 2078991 2079314 D defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 2078991..2079314 Neisseria gonorrhoeae FA 1090 3282817 YP_209114.1 CDS NGO2101 NC_002946.2 2079347 2079766 D Best Blastp Hit: gb|AAF42308.1| (AE002546) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 2079347..2079766 Neisseria gonorrhoeae FA 1090 3282816 YP_209115.1 CDS NGO2102 NC_002946.2 2079788 2080294 D catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 2079788..2080294 Neisseria gonorrhoeae FA 1090 3282815 YP_209116.1 CDS NGO2103 NC_002946.2 2080439 2083231 D Best Blastp Hit: pir||F81963 DNA-directed DNA polymerase (EC 2.7.7.7) I NMA0462 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379209|emb|CAB83758.1| (AL162753) DNA polymerase I [Neisseria meningitidis]; COG0749 DNA polymerase I - 3'-5' exonuclease and; hypothetical protein 2080439..2083231 Neisseria gonorrhoeae FA 1090 3282814 YP_209117.1 CDS NGO2104 NC_002946.2 2083793 2084488 D Best Blastp Hit: pir||C81019 hypothetical protein NMB1983 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227245|gb|AAF42311.1| (AE002547) hypothetical protein [Neisseria meningitidis MC58] >gi|7379207|emb|CAB83756.1| (AL162753) hypothetical protein [Neisseria meningitidis]; hypothetical protein 2083793..2084488 Neisseria gonorrhoeae FA 1090 3282813 YP_209118.1 CDS NGO2105 NC_002946.2 2084728 2089134 R Best Blastp Hit: pir||D81019 adhesion and penetration protein NMB1985 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227246|gb|AAF42312.1| (AE002547) adhesion and penetration protein [Neisseria meningitidis MC58]; adhesion and penetration protein complement(2084728..2089134) Neisseria gonorrhoeae FA 1090 3282812 YP_209119.1 CDS NGO2106 NC_002946.2 2089206 2089541 D hypothetical protein 2089206..2089541 Neisseria gonorrhoeae FA 1090 3282811 YP_209120.1 CDS trmE NC_002946.2 2089572 2090918 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 2089572..2090918 Neisseria gonorrhoeae FA 1090 3282810 YP_209121.1 CDS NGO2108 NC_002946.2 2090831 2091019 R hypothetical protein complement(2090831..2091019) Neisseria gonorrhoeae FA 1090 3282809 YP_209122.1 CDS NGO2109 NC_002946.2 2091811 2094240 R Best Blastp Hit: emb|CAB83769.1| (AL162753) haemoglobin-haptoglobin-utilization protein [Neisseria meningitidis]; COG1629 Outer membrane receptor proteins, mostly Fe; hemoglobin-haptoglobin utilization protein B complement(2091811..2094240) Neisseria gonorrhoeae FA 1090 3282808 YP_209123.1 CDS NGO2111 NC_002946.2 2095595 2097208 D Best Blastp Hit: pir||B81021 conserved hypothetical protein NMB1971 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227232|gb|AAF42300.1| (AE002545) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 2095595..2097208 Neisseria gonorrhoeae FA 1090 3282807 YP_209124.1 CDS NGO2112 NC_002946.2 2097269 2099158 R Best Blastp Hit: emb|CAB83772.1| (AL162753) para-aminobenzoate synthase component I [Neisseria meningitidis]; COG0147 Anthranilate/para-aminobenzoate synthases; para-aminobenzoate synthase component complement(2097269..2099158) Neisseria gonorrhoeae FA 1090 3282806 YP_209125.1 CDS NGO2113 NC_002946.2 2099285 2100214 D Best Blastp Hit: gb|AAG03531.1|AE004452_3 (AE004452) conserved hypothetical protein [Pseudomonas aeruginosa]; hypothetical protein 2099285..2100214 Neisseria gonorrhoeae FA 1090 3282805 YP_209126.1 CDS NGO2116 NC_002946.2 2102863 2103723 D Best Blastp Hit: emb|CAB83778.1| (AL162753) ABC transport ATP-binding protein [Neisseria meningitidis]; COG1127 Uncharacterized ABC-type transport system; ABC transporter ATP-binding protein 2102863..2103723 Neisseria gonorrhoeae FA 1090 3282804 YP_209127.1 CDS NGO2117 NC_002946.2 2103771 2104547 D Best Blastp Hit: pir||F81022 probable ABC transport inner membrane subunit NMA0486 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227225|gb|AAF42294.1| (AE002544) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379230|emb|CAB83779.1| (AL162753) ABC transport inner membrane subunit [Neisseria meningitidis]; COG0767 Uncharacterized BCR (predicted membrane; ABC transporter inner membrane protein 2103771..2104547 Neisseria gonorrhoeae FA 1090 3282803 YP_209128.1 CDS NGO2118 NC_002946.2 2104529 2105092 D Best Blastp Hit: pir||E81022 probable outer membrane transport protein NMA0487 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227224|gb|AAF42293.1| (AE002544) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379231|emb|CAB83780.1| (AL162753) outer membrane transport protein [Neisseria meningitidis]; COG1463 Predicted membrane protein; hypothetical protein 2104529..2105092 Neisseria gonorrhoeae FA 1090 3282802 YP_209129.1 CDS NGO2119 NC_002946.2 2105123 2105713 D Best Blastp Hit: gb|AAF42292.1| (AE002544) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 2105123..2105713 Neisseria gonorrhoeae FA 1090 3282801 YP_209130.1 CDS NGO2120 NC_002946.2 2105764 2106042 D Best Blastp Hit: pir||C81022 hypothetical protein NMB1962 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227222|gb|AAF42291.1| (AE002544) hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein 2105764..2106042 Neisseria gonorrhoeae FA 1090 3282800 YP_209131.1 CDS NGO2121 NC_002946.2 2106039 2106872 D Best Blastp Hit: gb|AAF42290.1| (AE002544) VacJ-related protein [Neisseria meningitidis MC58]; hypothetical protein 2106039..2106872 Neisseria gonorrhoeae FA 1090 3282799 YP_209132.1 CDS NGO2122 NC_002946.2 2106877 2107359 D Best Blastp Hit: pir||A81022 hypothetical protein NMB1960 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7227220|gb|AAF42289.1| (AE002544) hypothetical protein [Neisseria meningitidis MC58] >gi|7379235|emb|CAB83784.1| (AL162753) hypothetical protein [Neisseria meningitidis]; hypothetical protein 2106877..2107359 Neisseria gonorrhoeae FA 1090 3282798 YP_209133.1 CDS NGO2123 NC_002946.2 2107359 2107742 D Best Blastp Hit: gb|AAF42288.1| (AE002544) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379236|emb|CAB83785.1| (AL162753) conserved hypothetical protein [Neisseria meningitidis]; COG0824 Predicted esterase; hypothetical protein 2107359..2107742 Neisseria gonorrhoeae FA 1090 3282797 YP_209134.1 CDS NGO2124 NC_002946.2 2107739 2108227 D Best Blastp Hit: emb|CAB83786.1| (AL162753) periplasmic protein [Neisseria meningitidis]; COG0526 Thiol-disulfide isomerase and thioredoxins; thioredoxin 2107739..2108227 Neisseria gonorrhoeae FA 1090 3282796 YP_209135.1 CDS NGO2125 NC_002946.2 2108308 2108826 R Best Blastp Hit: emb|CAB83787.1| (AL162753) acetyltransferase [Neisseria meningitidis]; COG2171 Tetrahydrodipicolinate; acetyltransferase complement(2108308..2108826) Neisseria gonorrhoeae FA 1090 3282795 YP_209136.1 CDS rpmE NC_002946.2 2108958 2109173 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 2108958..2109173 Neisseria gonorrhoeae FA 1090 3282794 YP_209137.1 CDS NGO2127 NC_002946.2 2109425 2110066 D Best Blastp Hit: possibly phase variable - 9A residue homopolymer repeat in the coding sequence (ON); protein CadD; cadmium resistance protein 2109425..2110066 Neisseria gonorrhoeae FA 1090 3282793 YP_209138.1 CDS NGO2128 NC_002946.2 2110212 2111888 D Best Blastp Hit: pir||F81967 probable inner membrane protein NMA0497 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379241|emb|CAB83790.1| (AL162753) inner membrane protein [Neisseria meningitidis]; hypothetical protein 2110212..2111888 Neisseria gonorrhoeae FA 1090 3282792 YP_209139.1 CDS NGO2130 NC_002946.2 2112095 2112700 D Best Blastp Hit: emb|CAA68006.1| (X99693) regF [Neisseria gonorrhoeae]; COG0625 Glutathione-S-transferases; regulator of pilE expression; RegF 2112095..2112700 Neisseria gonorrhoeae FA 1090 3282791 YP_209140.1 CDS NGO2131 NC_002946.2 2112772 2113164 D Best Blastp Hit: gb|AAF42281.1| (AE002543) stringent starvation protein B [Neisseria meningitidis MC58]; ClpXP protease specificity-enhancing factor 2112772..2113164 Neisseria gonorrhoeae FA 1090 3282790 YP_209141.1 CDS NGO2132 NC_002946.2 2113212 2113397 D hypothetical protein 2113212..2113397 Neisseria gonorrhoeae FA 1090 3282789 YP_209142.1 CDS NGO2133 NC_002946.2 2113363 2113905 R Best Blastp Hit: gb|AAF42280.1| (AE002543) conserved hypothetical protein [Neisseria meningitidis MC58]; COG1610 Uncharacterized protein, YqeY family; hypothetical protein complement(2113363..2113905) Neisseria gonorrhoeae FA 1090 3282788 YP_209143.1 CDS rpsU NC_002946.2 2113941 2114153 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(2113941..2114153) Neisseria gonorrhoeae FA 1090 3282787 YP_209144.1 CDS NGO2135 NC_002946.2 2114442 2116292 R Best Blastp Hit: emb|CAB83796.1| (AL162753) transglycosylase [Neisseria meningitidis]; COG0741 Soluble lytic murein transglycosylase and; transglycosylase complement(2114442..2116292) Neisseria gonorrhoeae FA 1090 3282786 YP_209145.1 CDS NGO2136 NC_002946.2 2116331 2116516 D hypothetical protein 2116331..2116516 Neisseria gonorrhoeae FA 1090 3282785 YP_209146.1 CDS NGO2137 NC_002946.2 2116669 2117406 D Best Blastp Hit: emb|CAB83797.1| (AL162753) ABC transport ATP-binding subunit [Neisseria meningitidis]; COG1135 Uncharacterized ABC-type transport system; ABC transporter ATP-binding protein 2116669..2117406 Neisseria gonorrhoeae FA 1090 3282784 YP_209147.1 CDS NGO2138 NC_002946.2 2117408 2118094 D Best Blastp Hit: pir||D81023 ABC transporter permease NMB1947 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227206|gb|AAF42276.1| (AE002543) ABC transporter permease [Neisseria meningitidis MC58]; COG2011 Permease component of an uncharacterized ABC; ABC transporter permease 2117408..2118094 Neisseria gonorrhoeae FA 1090 3282783 YP_209148.1 CDS NGO2139 NC_002946.2 2118253 2119119 D Best Blastp Hit: gb|AAF44768.1|AF235151_1 (AF235151) GNA1946 [Neisseria gonorrhoeae] >gi|7274428|gb|AAF44769.1|AF235152_1 (AF235152) GNA1946 [Neisseria gonorrhoeae] >gi|7274430|gb|AAF44770.1|AF235153_1 (AF235153) GNA1946 [Neisseria gonorrhoeae]; COG1464 Lipoprotein, attached to the cytoplasmic; hypothetical protein 2118253..2119119 Neisseria gonorrhoeae FA 1090 3282782 YP_209149.1 CDS NGO2140 NC_002946.2 2119182 2119754 R catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; aromatic acid decarboxylase complement(2119182..2119754) Neisseria gonorrhoeae FA 1090 3282781 YP_209150.1 CDS NGO2141 NC_002946.2 2119909 2120769 D Best Blastp Hit: pir||A81969 probable chromosome segregation proteins NMA0508 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379252|emb|CAB83801.1| (AL162753) chromosome segregation proteins [Neisseria meningitidis]; COG1475 Predicted transcriptional regulators; chromosome segregation protein 2119909..2120769 Neisseria gonorrhoeae FA 1090 3282780 YP_209151.1 CDS NGO2142 NC_002946.2 2120817 2121239 R Best Blastp Hit: sp|P44726|YICC_HAEIN hypothetical protein HI0467 >gi|1074414|pir||C64153 hypothetical protein HI0467 - Haemophilus influenzae (strain Rd KW20) >gi|1573445|gb|AAC22126.1| (U32729) conserved hypothetical protein [Haemophilus influenzae Rd]; hypothetical protein complement(2120817..2121239) Neisseria gonorrhoeae FA 1090 3282779 YP_209152.1 CDS NGO2143 NC_002946.2 2121443 2121796 D Best Blastp Hit: pir||F81025 hypothetical protein NMB1941 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227199|gb|AAF42270.1| (AE002542) hypothetical protein [Neisseria meningitidis MC58]; AtpI protein; ATP synthase I 2121443..2121796 Neisseria gonorrhoeae FA 1090 3282778 YP_209153.1 CDS NGO2144 NC_002946.2 2121786 2122652 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 2121786..2122652 Neisseria gonorrhoeae FA 1090 3282777 YP_209154.1 CDS NGO2145 NC_002946.2 2122709 2122945 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C 2122709..2122945 Neisseria gonorrhoeae FA 1090 3282776 YP_209155.1 CDS NGO2146 NC_002946.2 2123015 2123485 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; ATP synthase F0F1 subunit B 2123015..2123485 Neisseria gonorrhoeae FA 1090 3282775 YP_209156.1 CDS NGO2147 NC_002946.2 2123490 2124023 D produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta 2123490..2124023 Neisseria gonorrhoeae FA 1090 3282774 YP_209157.1 CDS NGO2148 NC_002946.2 2124034 2125581 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 2124034..2125581 Neisseria gonorrhoeae FA 1090 3282773 YP_209158.1 CDS NGO2149 NC_002946.2 2125606 2126481 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma 2125606..2126481 Neisseria gonorrhoeae FA 1090 3282772 YP_209159.1 CDS NGO2150 NC_002946.2 2126519 2127916 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 2126519..2127916 Neisseria gonorrhoeae FA 1090 3282771 YP_209160.1 CDS atpC NC_002946.2 2127927 2128349 D part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; ATP synthase F0F1 subunit epsilon 2127927..2128349 Neisseria gonorrhoeae FA 1090 3282770 YP_209161.1 CDS glyQ NC_002946.2 2128521 2129417 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 2128521..2129417 Neisseria gonorrhoeae FA 1090 3282769 YP_209162.1 CDS glyS NC_002946.2 2129534 2131597 D glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 2129534..2131597 Neisseria gonorrhoeae FA 1090 3282768 YP_209163.1 CDS NGO2156 NC_002946.2 2132700 2133539 D Best Blastp Hit: sp|Q50947|LGTB_NEIGO lacto-N-neotetraose biosynthesis glycosyl transferase LgtB >gi|595811|gb|AAA68010.1| (U14554) glycosyl transferase [Neisseria gonorrhoeae]; protein LgtB; lacto-N-neotetraose biosynthesis glycosyl tranferase 2132700..2133539 Neisseria gonorrhoeae FA 1090 3282767 YP_209164.1 CDS NGO2158 NC_002946.2 2134535 2135551 D Best Blastp Hit: gb|AAA68012.1| (U14554) glycosyl transferase [Neisseria gonorrhoeae]; COG0463 Glycosyltransferases involved in cell wall; glycosyl transferase family protein; LgtD 2134535..2135551 Neisseria gonorrhoeae FA 1090 3282766 YP_209165.1 CDS NGO2159 NC_002946.2 2135570 2136412 D Best Blastp Hit: sp|Q50950|LGTE_NEIGO lacto-N-neotetraose biosynthesis glycosyl transferase LgtE >gi|595814|gb|AAA68013.1| (U14554) glycosyl transferase [Neisseria gonorrhoeae]; LgtE 2135570..2136412 Neisseria gonorrhoeae FA 1090 3282765 YP_209166.1 CDS NGO2160 NC_002946.2 2136608 2137333 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(2136608..2137333) Neisseria gonorrhoeae FA 1090 3282764 YP_209167.1 CDS NGO2161 NC_002946.2 2137437 2138231 D Best Blastp Hit: emb|CAB83821.1| (AL162753) hypothetical protein NMA0529 [Neisseria meningitidis]; COG0483 Inositol phosphatases; hypothetical protein 2137437..2138231 Neisseria gonorrhoeae FA 1090 3282763 YP_209168.1 CDS NGO2162 NC_002946.2 2138449 2138934 R Best Blastp Hit: gb|AAF42252.1| (AE002541) conserved hypothetical protein [Neisseria meningitidis MC58]; hypothetical protein complement(2138449..2138934) Neisseria gonorrhoeae FA 1090 3282762 YP_209169.1 CDS fabG NC_002946.2 2138999 2139745 R catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(2138999..2139745) Neisseria gonorrhoeae FA 1090 3282761 YP_209170.1 CDS guaA NC_002946.2 2139807 2141372 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(2139807..2141372) Neisseria gonorrhoeae FA 1090 3282760 YP_209171.1 CDS NGO2165 NC_002946.2 2141472 2143340 R Best Blastp Hit: gb|AAF42249.1| (AE002541) ABC transporter ATP-binding protein [Neisseria meningitidis MC58]; COG1132 ABC-type multidrug/protein/lipid transport; ABC transporter ATP-binding protein complement(2141472..2143340) Neisseria gonorrhoeae FA 1090 3282759 YP_209172.1 CDS NGO2166 NC_002946.2 2143479 2144405 R Best Blastp Hit: pir||B81026 malonyl CoA-acyl carrier protein transacylase NMB1918 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227176|gb|AAF42248.1| (AE002541) malonyl CoA-acyl carrier protein transacylase [Neisseria meningitidis MC58]; COG0331 (acyl-carrier-protein) S-malonyltransferase; ACP S-malonyltransferase complement(2143479..2144405) Neisseria gonorrhoeae FA 1090 3282758 YP_209173.1 CDS NGO2167 NC_002946.2 2144431 2144802 R Best Blastp Hit: emb|CAB83831.1| (AL162753) integral membrane protein [Neisseria meningitidis]; hypothetical protein complement(2144431..2144802) Neisseria gonorrhoeae FA 1090 3282757 YP_209174.1 CDS NGO2168 NC_002946.2 2144849 2145811 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(2144849..2145811) Neisseria gonorrhoeae FA 1090 3282756 YP_209175.1 CDS NGO2170 NC_002946.2 2146659 2146910 R Best Blastp Hit: gb|AAF42244.1| (AE002540) hypothetical protein [Neisseria meningitidis MC58] >gi|7379280|emb|CAB83834.1| (AL162753) hypothetical protein NMA0541 [Neisseria meningitidis]; hypothetical protein complement(2146659..2146910) Neisseria gonorrhoeae FA 1090 3282755 YP_209176.1 CDS NGO2171 NC_002946.2 2147048 2148094 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(2147048..2148094) Neisseria gonorrhoeae FA 1090 3282754 YP_209177.1 CDS NGO2172 NC_002946.2 2148184 2148711 R Best Blastp Hit: pir||G81028 conserved hypothetical protein NMB1912 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227169|gb|AAF42242.1| (AE002540) conserved hypothetical protein [Neisseria meningitidis MC58]; COG2236 Predicted phosphoribosyltransferases; hypothetical protein complement(2148184..2148711) Neisseria gonorrhoeae FA 1090 3282753 YP_209178.1 CDS rpmF NC_002946.2 2148886 2149065 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(2148886..2149065) Neisseria gonorrhoeae FA 1090 3282752 YP_209179.1 CDS NGO2174 NC_002946.2 2149099 2149599 R Best Blastp Hit: pir||A81973 hypothetical protein NMA0545 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379284|emb|CAB83838.1| (AL162753) hypothetical protein NMA0545 [Neisseria meningitidis]; hypothetical protein complement(2149099..2149599) Neisseria gonorrhoeae FA 1090 3282751 YP_209180.1 CDS maf NC_002946.2 2149747 2150337 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 2149747..2150337 Neisseria gonorrhoeae FA 1090 3282750 YP_209181.1 CDS NGO2176 NC_002946.2 2150090 2151172 R Best Blastp Hit: sp|P45610|TONB_KLEPN TonB protein >gi|484474|pir||JN0788 tonB protein - Klebsiella pneumoniae >gi|405758|emb|CAA48498.1| (X68478) TonB [Klebsiella pneumoniae]; hypothetical protein complement(2150090..2151172) Neisseria gonorrhoeae FA 1090 3282749 YP_209182.1 CDS NGO2177 NC_002946.2 2150384 2151109 D Best Blastp Hit: gb|AAF42238.1| (AE002540) conserved hypothetical protein [Neisseria meningitidis MC58]; COG0313 Predicted methyltransferases; hypothetical protein 2150384..2151109 Neisseria gonorrhoeae FA 1090 3282748 YP_209183.1 CDS NGO2178 NC_002946.2 2151190 2152827 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC complement(2151190..2152827) Neisseria gonorrhoeae FA 1090 3282747 YP_209184.1 CDS NGO2179 NC_002946.2 2152852 2152986 D hypothetical protein 2152852..2152986 Neisseria gonorrhoeae FA 1090 3282746 YP_209185.1 CDS NGO2180 NC_002946.2 2153000 2153221 R Best Blastp Hit: pir||E81973 hypothetical protein NMA0549 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379288|emb|CAB83842.1| (AL162753) hypothetical protein NMA0549 [Neisseria meningitidis]; COG0759 Uncharacterized ACR, YidD family; hypothetical protein complement(2153000..2153221) Neisseria gonorrhoeae FA 1090 3282745 YP_209186.1 CDS rnpA NC_002946.2 2153286 2153651 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(2153286..2153651) Neisseria gonorrhoeae FA 1090 3282744 YP_209187.1 CDS rpmH NC_002946.2 2153654 2153788 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(2153654..2153788) Neisseria gonorrhoeae FA 1090 3282743 NGO_t01 tRNA NGO_t01 NC_002946.2 13985 14067 R tRNA-Leu complement(13985..14067) Neisseria gonorrhoeae FA 1090 3370869 NGO_t02 tRNA NGO_t02 NC_002946.2 58420 58492 D tRNA-Lys 58420..58492 Neisseria gonorrhoeae FA 1090 3370808 NGO_t03 tRNA NGO_t03 NC_002946.2 142824 142897 R tRNA-Pro complement(142824..142897) Neisseria gonorrhoeae FA 1090 3370868 NGO_t04 tRNA NGO_t04 NC_002946.2 227047 227120 D tRNA-Pro 227047..227120 Neisseria gonorrhoeae FA 1090 3370809 NGO_t05 tRNA NGO_t05 NC_002946.2 248549 248638 D tRNA-Ser 248549..248638 Neisseria gonorrhoeae FA 1090 3370810 NGO_t06 tRNA NGO_t06 NC_002946.2 296821 296894 D tRNA-Val 296821..296894 Neisseria gonorrhoeae FA 1090 3370811 NGO_t07 tRNA NGO_t07 NC_002946.2 317524 317597 D tRNA-Arg 317524..317597 Neisseria gonorrhoeae FA 1090 3370856 NGO_t08 tRNA NGO_t08 NC_002946.2 317618 317689 D tRNA-Glu 317618..317689 Neisseria gonorrhoeae FA 1090 3370857 NGO_t09 tRNA NGO_t09 NC_002946.2 429441 429513 D tRNA-Thr 429441..429513 Neisseria gonorrhoeae FA 1090 3370858 NGO_t10 tRNA NGO_t10 NC_002946.2 435156 435228 D tRNA-Gln 435156..435228 Neisseria gonorrhoeae FA 1090 3370859 NGO_t11 tRNA NGO_t11 NC_002946.2 435244 435316 D tRNA-Gln 435244..435316 Neisseria gonorrhoeae FA 1090 3370860 NGO_t12 tRNA NGO_t12 NC_002946.2 454725 454812 D tRNA-Ser 454725..454812 Neisseria gonorrhoeae FA 1090 3370861 NGO_t13 tRNA NGO_t13 NC_002946.2 454893 454979 D tRNA-Ser 454893..454979 Neisseria gonorrhoeae FA 1090 3370862 NGO_t14 tRNA NGO_t14 NC_002946.2 793319 793402 D tRNA-Leu 793319..793402 Neisseria gonorrhoeae FA 1090 3370863 NGO_t15 tRNA NGO_t15 NC_002946.2 793444 793531 D tRNA-Ser 793444..793531 Neisseria gonorrhoeae FA 1090 3370864 NGO_t16 tRNA NGO_t16 NC_002946.2 958976 959048 R tRNA-Asn complement(958976..959048) Neisseria gonorrhoeae FA 1090 3370867 NGO_t17 tRNA NGO_t17 NC_002946.2 985851 985924 D tRNA-Arg 985851..985924 Neisseria gonorrhoeae FA 1090 3370865 NGO_t18 tRNA NGO_t18 NC_002946.2 985945 986016 D tRNA-Glu 985945..986016 Neisseria gonorrhoeae FA 1090 3370847 NGO_t19 tRNA NGO_t19 NC_002946.2 1078340 1078421 R tRNA-Leu complement(1078340..1078421) Neisseria gonorrhoeae FA 1090 3370866 NGO_t20 tRNA NGO_t20 NC_002946.2 1099900 1099972 D tRNA-Glu 1099900..1099972 Neisseria gonorrhoeae FA 1090 3370848 NGO_t21 tRNA NGO_t21 NC_002946.2 1119497 1119570 R tRNA-Ala complement(1119497..1119570) Neisseria gonorrhoeae FA 1090 3370821 NGO_t22 tRNA NGO_t22 NC_002946.2 1119582 1119656 R tRNA-Ile complement(1119582..1119656) Neisseria gonorrhoeae FA 1090 3370820 NGO_t23 tRNA NGO_t23 NC_002946.2 1188617 1188698 R tRNA-Leu complement(1188617..1188698) Neisseria gonorrhoeae FA 1090 3370819 NGO_t24 tRNA NGO_t24 NC_002946.2 1198388 1198474 R tRNA-Leu complement(1198388..1198474) Neisseria gonorrhoeae FA 1090 3370818 NGO_t25 tRNA NGO_t25 NC_002946.2 1198578 1198648 R tRNA-Cys complement(1198578..1198648) Neisseria gonorrhoeae FA 1090 3370817 NGO_t26 tRNA NGO_t26 NC_002946.2 1198677 1198749 R tRNA-Gly complement(1198677..1198749) Neisseria gonorrhoeae FA 1090 3370816 NGO_t27 tRNA NGO_t27 NC_002946.2 1198778 1198850 R tRNA-Gly complement(1198778..1198850) Neisseria gonorrhoeae FA 1090 3370815 NGO_t28 tRNA NGO_t28 NC_002946.2 1198879 1198951 R tRNA-Gly complement(1198879..1198951) Neisseria gonorrhoeae FA 1090 3370814 NGO_t29 tRNA NGO_t29 NC_002946.2 1261594 1261666 R tRNA-Ala complement(1261594..1261666) Neisseria gonorrhoeae FA 1090 3370813 NGO_t30 tRNA NGO_t30 NC_002946.2 1261675 1261748 R tRNA-Ile complement(1261675..1261748) Neisseria gonorrhoeae FA 1090 3370812 NGO_t31 tRNA NGO_t31 NC_002946.2 1287150 1287222 D tRNA-Arg 1287150..1287222 Neisseria gonorrhoeae FA 1090 3370849 NGO_t32 tRNA NGO_t32 NC_002946.2 1312386 1312458 D tRNA-Met 1312386..1312458 Neisseria gonorrhoeae FA 1090 3370850 NGO_t33 tRNA NGO_t33 NC_002946.2 1439146 1439218 R tRNA-Asn complement(1439146..1439218) Neisseria gonorrhoeae FA 1090 3370830 NGO_t34 tRNA NGO_t34 NC_002946.2 1520545 1520618 D tRNA-Met 1520545..1520618 Neisseria gonorrhoeae FA 1090 3370851 NGO_t35 tRNA NGO_t35 NC_002946.2 1520629 1520701 D tRNA-Ala 1520629..1520701 Neisseria gonorrhoeae FA 1090 3370852 NGO_t36 tRNA NGO_t36 NC_002946.2 1575592 1575664 R tRNA-Phe complement(1575592..1575664) Neisseria gonorrhoeae FA 1090 3370829 NGO_t37 tRNA NGO_t37 NC_002946.2 1629481 1629552 R tRNA-Arg complement(1629481..1629552) Neisseria gonorrhoeae FA 1090 3370828 NGO_t38 tRNA NGO_t38 NC_002946.2 1653169 1653241 R tRNA-Ala complement(1653169..1653241) Neisseria gonorrhoeae FA 1090 3370827 NGO_t39 tRNA NGO_t39 NC_002946.2 1653250 1653323 R tRNA-Ile complement(1653250..1653323) Neisseria gonorrhoeae FA 1090 3370826 NGO_t40 tRNA NGO_t40 NC_002946.2 1743199 1743272 R tRNA-Asp complement(1743199..1743272) Neisseria gonorrhoeae FA 1090 3370825 NGO_t41 tRNA NGO_t41 NC_002946.2 1743308 1743380 R tRNA-Val complement(1743308..1743380) Neisseria gonorrhoeae FA 1090 3370824 NGO_t42 tRNA NGO_t42 NC_002946.2 1743423 1743496 R tRNA-Asp complement(1743423..1743496) Neisseria gonorrhoeae FA 1090 3370823 NGO_t43 tRNA NGO_t43 NC_002946.2 1743532 1743604 R tRNA-Val complement(1743532..1743604) Neisseria gonorrhoeae FA 1090 3370822 NGO_t44 tRNA NGO_t44 NC_002946.2 1765433 1765505 D tRNA-Thr 1765433..1765505 Neisseria gonorrhoeae FA 1090 3370853 NGO_t45 tRNA NGO_t45 NC_002946.2 1827128 1827200 R tRNA-Trp complement(1827128..1827200) Neisseria gonorrhoeae FA 1090 3370839 NGO_t46 tRNA NGO_t46 NC_002946.2 1828443 1828514 R tRNA-Thr complement(1828443..1828514) Neisseria gonorrhoeae FA 1090 3370838 NGO_t47 tRNA NGO_t47 NC_002946.2 1828527 1828597 R tRNA-Gly complement(1828527..1828597) Neisseria gonorrhoeae FA 1090 3370837 NGO_t48 tRNA NGO_t48 NC_002946.2 1828631 1828711 R tRNA-Tyr complement(1828631..1828711) Neisseria gonorrhoeae FA 1090 3370836 NGO_t49 tRNA NGO_t49 NC_002946.2 1876321 1876393 R tRNA-Ala complement(1876321..1876393) Neisseria gonorrhoeae FA 1090 3370835 NGO_t50 tRNA NGO_t50 NC_002946.2 1876402 1876475 R tRNA-Ile complement(1876402..1876475) Neisseria gonorrhoeae FA 1090 3370834 NGO_t51 tRNA NGO_t51 NC_002946.2 1895940 1896012 D tRNA-Lys 1895940..1896012 Neisseria gonorrhoeae FA 1090 3370854 NGO_t52 tRNA NGO_t52 NC_002946.2 1972321 1972395 D tRNA-Pro 1972321..1972395 Neisseria gonorrhoeae FA 1090 3370855 NGO_t53 tRNA NGO_t53 NC_002946.2 1972423 1972496 D tRNA-Arg 1972423..1972496 Neisseria gonorrhoeae FA 1090 3370831 NGO_t54 tRNA NGO_t54 NC_002946.2 1972527 1972599 D tRNA-His 1972527..1972599 Neisseria gonorrhoeae FA 1090 3370832 NGO_t55 tRNA NGO_t55 NC_002946.2 2011052 2011125 R tRNA-Met complement(2011052..2011125) Neisseria gonorrhoeae FA 1090 3370833 NGO_r01 rRNA NGO_r01 NC_002946.2 1116039 1116155 R 5S ribosomal RNA complement(1116039..1116155) Neisseria gonorrhoeae FA 1090 3370870 NGO_r02 rRNA NGO_r02 NC_002946.2 1116249 1119158 R 23S ribosomal RNA complement(1116249..1119158) Neisseria gonorrhoeae FA 1090 3370843 NGO_r03 rRNA NGO_r03 NC_002946.2 1119754 1121298 R 16S ribosomal RNA complement(1119754..1121298) Neisseria gonorrhoeae FA 1090 3370807 NGO_r04 rRNA NGO_r04 NC_002946.2 1258142 1258258 R 5S ribosomal RNA complement(1258142..1258258) Neisseria gonorrhoeae FA 1090 3370804 NGO_r05 rRNA NGO_r05 NC_002946.2 1258352 1261255 R 23S ribosomal RNA complement(1258352..1261255) Neisseria gonorrhoeae FA 1090 3370844 NGO_r06 rRNA NGO_r06 NC_002946.2 1261846 1263390 R 16S ribosomal RNA complement(1261846..1263390) Neisseria gonorrhoeae FA 1090 3370840 NGO_r07 rRNA NGO_r07 NC_002946.2 1649718 1649834 R 5S ribosomal RNA complement(1649718..1649834) Neisseria gonorrhoeae FA 1090 3370805 NGO_r08 rRNA NGO_r08 NC_002946.2 1649928 1652830 R 23S ribosomal RNA complement(1649928..1652830) Neisseria gonorrhoeae FA 1090 3370845 NGO_r09 rRNA NGO_r09 NC_002946.2 1653421 1654965 R 16S ribosomal RNA complement(1653421..1654965) Neisseria gonorrhoeae FA 1090 3370841 NGO_r10 rRNA NGO_r10 NC_002946.2 1872870 1872986 R 5S ribosomal RNA complement(1872870..1872986) Neisseria gonorrhoeae FA 1090 3370806 NGO_r11 rRNA NGO_r11 NC_002946.2 1873080 1875982 R 23S ribosomal RNA complement(1873080..1875982) Neisseria gonorrhoeae FA 1090 3370846 NGO_r12 rRNA NGO_r12 NC_002946.2 1876573 1878117 R 16S ribosomal RNA complement(1876573..1878117) Neisseria gonorrhoeae FA 1090 3370842