-- dump date   	20240506_000128
-- class       	Genbank::Contig
-- table       	contig_comment
-- id	comment
NC_007406.1	REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP000115.1.REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu)REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNLREFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-StanfordREFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/27/2023 00:54:13REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/27/2023 00:54:13 Annotation Pipeline               :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/27/2023 00:54:13 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/27/2023 00:54:13 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/27/2023 00:54:13 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/27/2023 00:54:13 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/27/2023 00:54:13 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/27/2023 00:54:13 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,200REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/27/2023 00:54:13 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,200 CDSs (total)                      :: 3,144REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/27/2023 00:54:13 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,200 CDSs (total)                      :: 3,144 Genes (coding)                    :: 3,055REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/27/2023 00:54:13 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,200 CDSs (total)                      :: 3,144 Genes (coding)                    :: 3,055 CDSs (with protein)               :: 3,055REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/27/2023 00:54:13 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,200 CDSs (total)                      :: 3,144 Genes (coding)                    :: 3,055 CDSs (with protein)               :: 3,055 Genes (RNA)                       :: 56REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/27/2023 00:54:13 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,200 CDSs (total)                      :: 3,144 Genes (coding)                    :: 3,055 CDSs (with protein)               :: 3,055 Genes (RNA)                       :: 56 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/27/2023 00:54:13 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,200 CDSs (total)                      :: 3,144 Genes (coding)                    :: 3,055 CDSs (with protein)               :: 3,055 Genes (RNA)                       :: 56 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/27/2023 00:54:13 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,200 CDSs (total)                      :: 3,144 Genes (coding)                    :: 3,055 CDSs (with protein)               :: 3,055 Genes (RNA)                       :: 56 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 49REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/27/2023 00:54:13 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,200 CDSs (total)                      :: 3,144 Genes (coding)                    :: 3,055 CDSs (with protein)               :: 3,055 Genes (RNA)                       :: 56 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 49 ncRNAs                            :: 4REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/27/2023 00:54:13 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,200 CDSs (total)                      :: 3,144 Genes (coding)                    :: 3,055 CDSs (with protein)               :: 3,055 Genes (RNA)                       :: 56 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 49 ncRNAs                            :: 4 Pseudo Genes (total)              :: 89REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/27/2023 00:54:13 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,200 CDSs (total)                      :: 3,144 Genes (coding)                    :: 3,055 CDSs (with protein)               :: 3,055 Genes (RNA)                       :: 56 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 49 ncRNAs                            :: 4 Pseudo Genes (total)              :: 89 CDSs (without protein)            :: 89REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/27/2023 00:54:13 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,200 CDSs (total)                      :: 3,144 Genes (coding)                    :: 3,055 CDSs (with protein)               :: 3,055 Genes (RNA)                       :: 56 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 49 ncRNAs                            :: 4 Pseudo Genes (total)              :: 89 CDSs (without protein)            :: 89 Pseudo Genes (ambiguous residues) :: 0 of 89REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/27/2023 00:54:13 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,200 CDSs (total)                      :: 3,144 Genes (coding)                    :: 3,055 CDSs (with protein)               :: 3,055 Genes (RNA)                       :: 56 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 49 ncRNAs                            :: 4 Pseudo Genes (total)              :: 89 CDSs (without protein)            :: 89 Pseudo Genes (ambiguous residues) :: 0 of 89 Pseudo Genes (frameshifted)       :: 43 of 89REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/27/2023 00:54:13 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,200 CDSs (total)                      :: 3,144 Genes (coding)                    :: 3,055 CDSs (with protein)               :: 3,055 Genes (RNA)                       :: 56 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 49 ncRNAs                            :: 4 Pseudo Genes (total)              :: 89 CDSs (without protein)            :: 89 Pseudo Genes (ambiguous residues) :: 0 of 89 Pseudo Genes (frameshifted)       :: 43 of 89 Pseudo Genes (incomplete)         :: 54 of 89REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/27/2023 00:54:13 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,200 CDSs (total)                      :: 3,144 Genes (coding)                    :: 3,055 CDSs (with protein)               :: 3,055 Genes (RNA)                       :: 56 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 49 ncRNAs                            :: 4 Pseudo Genes (total)              :: 89 CDSs (without protein)            :: 89 Pseudo Genes (ambiguous residues) :: 0 of 89 Pseudo Genes (frameshifted)       :: 43 of 89 Pseudo Genes (incomplete)         :: 54 of 89 Pseudo Genes (internal stop)      :: 6 of 89REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/27/2023 00:54:13 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,200 CDSs (total)                      :: 3,144 Genes (coding)                    :: 3,055 CDSs (with protein)               :: 3,055 Genes (RNA)                       :: 56 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 49 ncRNAs                            :: 4 Pseudo Genes (total)              :: 89 CDSs (without protein)            :: 89 Pseudo Genes (ambiguous residues) :: 0 of 89 Pseudo Genes (frameshifted)       :: 43 of 89 Pseudo Genes (incomplete)         :: 54 of 89 Pseudo Genes (internal stop)      :: 6 of 89 Pseudo Genes (multiple problems)  :: 14 of 89REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/27/2023 00:54:13 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,200 CDSs (total)                      :: 3,144 Genes (coding)                    :: 3,055 CDSs (with protein)               :: 3,055 Genes (RNA)                       :: 56 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 49 ncRNAs                            :: 4 Pseudo Genes (total)              :: 89 CDSs (without protein)            :: 89 Pseudo Genes (ambiguous residues) :: 0 of 89 Pseudo Genes (frameshifted)       :: 43 of 89 Pseudo Genes (incomplete)         :: 54 of 89 Pseudo Genes (internal stop)      :: 6 of 89 Pseudo Genes (multiple problems)  :: 14 of 89 CRISPR Arrays                     :: 1REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/27/2023 00:54:13 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,200 CDSs (total)                      :: 3,144 Genes (coding)                    :: 3,055 CDSs (with protein)               :: 3,055 Genes (RNA)                       :: 56 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 49 ncRNAs                            :: 4 Pseudo Genes (total)              :: 89 CDSs (without protein)            :: 89 Pseudo Genes (ambiguous residues) :: 0 of 89 Pseudo Genes (frameshifted)       :: 43 of 89 Pseudo Genes (incomplete)         :: 54 of 89 Pseudo Genes (internal stop)      :: 6 of 89 Pseudo Genes (multiple problems)  :: 14 of 89 CRISPR Arrays                     :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP000115.1. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/27/2023 00:54:13 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,200 CDSs (total)                      :: 3,144 Genes (coding)                    :: 3,055 CDSs (with protein)               :: 3,055 Genes (RNA)                       :: 56 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 49 ncRNAs                            :: 4 Pseudo Genes (total)              :: 89 CDSs (without protein)            :: 89 Pseudo Genes (ambiguous residues) :: 0 of 89 Pseudo Genes (frameshifted)       :: 43 of 89 Pseudo Genes (incomplete)         :: 54 of 89 Pseudo Genes (internal stop)      :: 6 of 89 Pseudo Genes (multiple problems)  :: 14 of 89 CRISPR Arrays                     :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length.